Citrus Sinensis ID: 045270

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccEEEEEccccccEEEccccccccccccccEEEccccccccccccHHHHccccccEEEccccccEEcccHHHHccccccEEEccccccEEEcccHHHcccccccEEEccccEEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccEEEcccccccccccHHHHHcccccccEEEcccccccccccccccccccEEEccccccEEEcccccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccHHHHccccccEEEcccccccccccHHHHHcccEEEccccEEEEcccHHHHccccccEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEcccccEEEEEEEcccccccEEccHHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHcccccccEEEEccccccccccHHHccccccHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccEEEEEccccccccccHHHcccccccEEEEEccccccccccccccccccEEEEEcccccccccccccccccEEEEccccccccccHHHHHHHHHccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHEccccccccccccHHHHccccccEEEcccccccccccHHHcccHccc
Coil and Loop (DISEMBL)
mqwrqstdccdwsgvdcdeaghvigldlstesisGGIENAASLFSLHYLRSLNLartsfngtqipsklanissltylnlsdagfaghiplQISSMARLVALDfsfnqfsgsisSIRWEHLLNLVYAVLsdnslngsiprsmfefpifsnasssaldtldlsgnrlrgsipvSVFELKKLTSLLLSsnnlhgtvqldkilnlgnlakldlsynslavdessrnysfspMLELLNLAScklreipnlknqsQLQYLYLSENqisreipnwIWRVSVVGLHClnlshnllvgfqgpysipalrfidlsshqlrgnihqlpnnliyidfsnnnftssipadtgnfmpRLRYFCAAnngltgiipaslcnattlslldlsnnsfmkkSDAFLNCLLQTLDlngnrlqgtvpksiaNCKMLEVLnlgnnqfsdkfpcwlydapslh
Flexible Loop (DISEMBL)
mqwrqstdccdWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH
Low Complexity Region (SEG)
MQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFsnasssaldtldlsGNRLRGSIPVSVFElkkltslllssnnlHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTlslldlsnnsFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH
Disordered region (IsUnstruct)
******TDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYD*****
Disordered Region (DISOPRED)
MQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL*
Disordered Region (DISEMBL)
*********CDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH
Disordered Region (DISPRO)
*QW*QSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.954	0.495	0.303	3e-42
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.811	0.285	0.333	1e-35
Q9FL28	1173	LRR receptor-like serine/	no	no	0.868	0.325	0.318	2e-35
O82318	960	Probably inactive leucine	no	no	0.831	0.381	0.312	5e-33
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.897	0.403	0.312	1e-31
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.875	0.308	0.323	8e-31
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.961	0.388	0.299	1e-30
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.952	0.407	0.273	1e-30
Q6XAT2	967	LRR receptor-like serine/	no	no	0.922	0.419	0.315	2e-30
C0LGW6	966	LRR receptor-like serine/	no	no	0.918	0.418	0.305	3e-30

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 158/521 (30%), Positives = 234/521 (44%), Gaps = 101/521 (19%)

Query: 3   WRQSTDCCDWSGVDC-DEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNG 61
           W +STDCC W+GV C D++G VI LD+    ++  ++  +SLF L YLR L+L   +  G
Sbjct: 65  WNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG 124

Query: 62  TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSM------------------------AR 97
            +IPS L N+S LT +NL    F G IP  I ++                        +R
Sbjct: 125 -EIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSR 183

Query: 98  LVALDFSFNQFSGSI-------SSIR----------------WEHLLNLVYAVLSDNSLN 134
           LV L+   N+  G I         +R                  +L NLV+ VL+ N L 
Sbjct: 184 LVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLV 243

Query: 135 GSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ 194
           G +P S+         +   L  +    N L G+IP+S   L KL+  +LSSNN   T  
Sbjct: 244 GEVPASI--------GNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFP 295

Query: 195 LDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR---EIPNLKNQSQL 251
            D  +   NL   D+SYNS +     ++    P LE + L   +     E  N  + ++L
Sbjct: 296 FDMSI-FHNLEYFDVSYNSFS-GPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKL 353

Query: 252 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPY--SIPALRFIDLSSHQL 309
           Q L L  N++   IP  I R+  + L  L++SHN   G   P    +  L  +DLS + L
Sbjct: 354 QDLILGRNRLHGPIPESISRL--LNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNL 411

Query: 310 RGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTL 369
            G +      L  +  S+N+F+S    +T      +      +N   G IP  +C  ++L
Sbjct: 412 EGEVPACLWRLNTMVLSHNSFSSF--ENTSQEEALIEELDLNSNSFQGPIPYMICKLSSL 469

Query: 370 SLLDLSNNSFMKKSDAFLNCL------------------------------LQTLDLNGN 399
             LDLSNN F   S +  +C+                              L +LD++ N
Sbjct: 470 GFLDLSNNLF---SGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHN 526

Query: 400 RLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           +L+G  PKS+ NCK LE++N+ +N+  D FP WL   PSLH
Sbjct: 527 QLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLH 567

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 139/417 (33%), Positives = 209/417 (50%), Gaps = 60/417 (14%)

Query: 41  ASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100
           A L  L  L++LNL   SF+G +IPS+L ++ S+ YLNL      G IP +++ +A L  
Sbjct: 234 AELNRLKNLQTLNLGDNSFSG-EIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQT 292

Query: 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMF------------------ 142
           LD S N  +G I    W  +  L + VL+ N L+GS+P+++                   
Sbjct: 293 LDLSSNNLTGVIHEEFW-RMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSG 351

Query: 143 EFPI-FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201
           E P   SN  S  L  LDLS N L G IP S+F+L +LT+L L++N+L GT+    I NL
Sbjct: 352 EIPAEISNCQS--LKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLS-SSISNL 408

Query: 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIP-NLKNQSQLQYLYLSEN 259
            NL +  L +N+L   +  +   F   LE++ L   +   E+P  + N ++LQ +    N
Sbjct: 409 TNLQEFTLYHNNLE-GKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGN 467

Query: 260 QISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNN 319
           ++S EIP+ I R+    L  L+L  N LVG     +IPA            GN HQ    
Sbjct: 468 RLSGEIPSSIGRLK--DLTRLHLRENELVG-----NIPA----------SLGNCHQ---- 506

Query: 320 LIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF 379
           +  ID ++N  + SIP+  G F+  L  F   NN L G +P SL N   L+ ++ S+N F
Sbjct: 507 MTVIDLADNQLSGSIPSSFG-FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKF 565

Query: 380 ------MKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
                 +  S ++L     + D+  N  +G +P  +     L+ L LG NQF+ + P
Sbjct: 566 NGSISPLCGSSSYL-----SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIP 617

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 207/443 (46%), Gaps = 61/443 (13%)

Query: 10  CDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLA 69
           C+W+G+ CD  GHV+ + L  + + G +  A                           +A
Sbjct: 61  CNWTGITCDSTGHVVSVSLLEKQLEGVLSPA---------------------------IA 93

Query: 70  NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLS 129
           N++ L  L+L+   F G IP +I  +  L  L    N FSGSI S  WE L N+ Y  L 
Sbjct: 94  NLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWE-LKNIFYLDLR 152

Query: 130 DNSLNGSIPRSM----------FEFPIFSNASSSAL-DTLDL-----SGNRLRGSIPVSV 173
           +N L+G +P  +          F++   +      L D + L     +GN L GSIPVS+
Sbjct: 153 NNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSI 212

Query: 174 FELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN 233
             L  LT L LS N L G +  D   NL NL  L L+ N L  D  +   + S +++L  
Sbjct: 213 GTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLEL 271

Query: 234 LASCKLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG 292
             +    +IP  L N  QLQ L + +N+++  IP+ ++R++   L  L LS N LV   G
Sbjct: 272 YDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLT--QLTHLGLSENHLV---G 326

Query: 293 PYS-----IPALRFIDLSSHQLRGNIHQ-LPN--NLIYIDFSNNNFTSSIPADTGNFMPR 344
           P S     + +L  + L S+   G   Q + N  NL  +    NN +  +PAD G  +  
Sbjct: 327 PISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLG-LLTN 385

Query: 345 LRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAFLNCLLQTLDLNGNRLQG 403
           LR   A +N LTG IP+S+ N T L LLDLS+N    +    F    L  + +  N   G
Sbjct: 386 LRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTG 445

Query: 404 TVPKSIANCKMLEVLNLGNNQFS 426
            +P  I NC  LE L++ +N  +
Sbjct: 446 EIPDDIFNCSNLETLSVADNNLT 468

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  142 bits (358), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 136/435 (31%), Positives = 206/435 (47%), Gaps = 69/435 (15%)

Query: 3   WRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGT 62
           +  + D C WSGV C+    V+ LDLS +++SG I  AA+ F L +L+++NL+  + +G 
Sbjct: 54  YSSTNDVCLWSGVVCNNISRVVSLDLSGKNMSGQILTAAT-FRLPFLQTINLSNNNLSGP 112

Query: 63  QIPSKLANIS--SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHL 120
            IP  +   S  SL YLNLS+  F+G IP     +  L  LD S N F+G I +      
Sbjct: 113 -IPHDIFTTSSPSLRYLNLSNNNFSGSIPRGF--LPNLYTLDLSNNMFTGEIYN-DIGVF 168

Query: 121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180
            NL    L  N L G +P  +         + S L+ L L+ N+L G +PV + ++K L 
Sbjct: 169 SNLRVLDLGGNVLTGHVPGYL--------GNLSRLEFLTLASNQLTGGVPVELGKMKNLK 220

Query: 181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR 240
            + L  NNL G +   +I  L +L  LDL YN+L+           P+            
Sbjct: 221 WIYLGYNNLSGEIPY-QIGGLSSLNHLDLVYNNLS----------GPI------------ 257

Query: 241 EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALR 300
             P+L +  +L+Y++L +N++S +IP  I                        +S+  L 
Sbjct: 258 -PPSLGDLKKLEYMFLYQNKLSGQIPPSI------------------------FSLQNLI 292

Query: 301 FIDLSSHQLRGNIHQLP---NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG 357
            +D S + L G I +L     +L  +   +NN T  IP    + +PRL+     +N  +G
Sbjct: 293 SLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTS-LPRLKVLQLWSNRFSG 351

Query: 358 IIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKML 415
            IPA+L     L++LDLS N+   K    L  +  L  L L  N L   +P S+  C+ L
Sbjct: 352 GIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSL 411

Query: 416 EVLNLGNNQFSDKFP 430
           E + L NN FS K P
Sbjct: 412 ERVRLQNNGFSGKLP 426

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 158/505 (31%), Positives = 218/505 (43%), Gaps = 110/505 (21%)

Query: 7   TDCCDWSGVDCD-EAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIP 65
            D C+WSGV C+ E+  VI LD+S   + G                           +I 
Sbjct: 51  VDVCNWSGVKCNKESTQVIELDISGRDLGG---------------------------EIS 83

Query: 66  SKLANISSLTYLNLSDAGFAGHIPLQISSMAR-LVALDFSFNQFSGSISSIRWEHLLN-L 123
             +AN++ LT L+LS   F G IP +I S+   L  L  S N   G+I   +   LLN L
Sbjct: 84  PSIANLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIP--QELGLLNRL 141

Query: 124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF-ELKKLTSL 182
           VY  L  N LNGSIP       +F N SSS+L  +DLS N L G IP++    LK+L  L
Sbjct: 142 VYLDLGSNRLNGSIP-----VQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHLKELRFL 196

Query: 183 LLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI 242
           LL SN L GTV    + N  NL  +DL  N L+ +  S+  S  P L+ L L+       
Sbjct: 197 LLWSNKLTGTVP-SSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSH 255

Query: 243 PN----------LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG--- 289
            N          L N S LQ L L+ N +  EI + +  +S V L  ++L  N + G   
Sbjct: 256 NNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLS-VNLVQIHLDQNRIHGSIP 314

Query: 290 ------------------FQGPY-----SIPALRFIDLSSHQLRGNI----HQLPNNLIY 322
                               GP       +  L  + LS++ L G I      +P  L  
Sbjct: 315 PEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIP-RLGL 373

Query: 323 IDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF--- 379
           +D S NN + SIP   GN + +LR      N L+G +P SL     L +LDLS+N+    
Sbjct: 374 LDVSRNNLSGSIPDSFGN-LSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGT 432

Query: 380 --------MKKSDAFLNC-----------------LLQTLDLNGNRLQGTVPKSIANCKM 414
                   ++    +LN                  ++ ++DL+ N L G +P  + +C  
Sbjct: 433 IPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIA 492

Query: 415 LEVLNLGNNQFSDKFPCWLYDAPSL 439
           LE LNL  N FS   P  L   P L
Sbjct: 493 LEHLNLSRNGFSSTLPSSLGQLPYL 517

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  135 bits (339), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 155/479 (32%), Positives = 210/479 (43%), Gaps = 94/479 (19%)

Query: 41  ASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100
           A L  L  L  LNLA  S  G +IPS+L  +S L YL+L      G IP  ++ +  L  
Sbjct: 233 AELGRLENLEILNLANNSLTG-EIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQT 291

Query: 101 LDFSFNQFSGSISSIRW--EHLLNLVYA----------------------VLSDNSLNGS 136
           LD S N  +G I    W    LL+LV A                      VLS   L+G 
Sbjct: 292 LDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGE 351

Query: 137 IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLD 196
           IP  +        +   +L  LDLS N L GSIP ++FEL +LT L L +N L GT+   
Sbjct: 352 IPVEL--------SKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLS-P 402

Query: 197 KILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIP-NLKNQSQLQYL 254
            I NL NL  L L +N+L   +  +  S    LE+L L   +   EIP  + N + L+ +
Sbjct: 403 SISNLTNLQWLVLYHNNLE-GKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMI 461

Query: 255 YLSENQISREIPNWIWRV-----------SVVG-----------LHCLNLSHNLLVG--- 289
            +  N    EIP  I R+            +VG           L+ L+L+ N L G   
Sbjct: 462 DMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIP 521

Query: 290 ------------------FQG--PYSIPALR---FIDLSSHQLRGNIHQLPNNLIYI--D 324
                              QG  P S+ +LR    I+LS ++L G IH L  +  Y+  D
Sbjct: 522 SSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFD 581

Query: 325 FSNNNFTSSIPADTGNF--MPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK 382
            +NN F   IP + GN   + RLR      N LTG IP +L     LSLLD+S+N+    
Sbjct: 582 VTNNGFEDEIPLELGNSQNLDRLRL---GKNQLTGKIPWTLGKIRELSLLDMSSNALTGT 638

Query: 383 S--DAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439
                 L   L  +DLN N L G +P  +     L  L L +NQF +  P  L++   L
Sbjct: 639 IPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKL 697

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 146/488 (29%), Positives = 233/488 (47%), Gaps = 65/488 (13%)

Query: 5   QSTDCCD-WSGVDCDEAGHVI-GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGT 62
           ++T C + W GV CD +G+V+  L+LS   +SG +   + +  L  L +L+L+  SF+G 
Sbjct: 58  ETTPCNNNWFGVICDLSGNVVETLNLSASGLSGQL--GSEIGELKSLVTLDLSLNSFSGL 115

Query: 63  QIPSKLANISSLTYLNLSDAGFAGH------------------------IPLQISSMARL 98
            +PS L N +SL YL+LS+  F+G                         IP  +  +  L
Sbjct: 116 -LPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIEL 174

Query: 99  VALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMF------EFPI------ 146
           V L  S+N  SG+I  +   +   L Y  L++N LNGS+P S++      E  +      
Sbjct: 175 VDLRMSYNNLSGTIPEL-LGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLG 233

Query: 147 ----FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLG 202
               F +++   L +LDLS N  +G +P  +     L SL++   NL GT+    +  L 
Sbjct: 234 GRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIP-SSMGMLR 292

Query: 203 NLAKLDLSYNSLA--VDESSRNYSFSPMLELLNLASCKLR-EIP-NLKNQSQLQYLYLSE 258
            ++ +DLS N L+  + +   N S    LE L L   +L+ EIP  L    +LQ L L  
Sbjct: 293 KVSVIDLSDNRLSGNIPQELGNCS---SLETLKLNDNQLQGEIPPALSKLKKLQSLELFF 349

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFID---LSSHQLRGNIHQ 315
           N++S EIP  IW++    L  + + +N L G + P  +  L+ +    L ++   G+I  
Sbjct: 350 NKLSGEIPIGIWKIQ--SLTQMLVYNNTLTG-ELPVEVTQLKHLKKLTLFNNGFYGDIPM 406

Query: 316 ---LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL 372
              L  +L  +D   N FT  IP    +   +LR F   +N L G IPAS+    TL  +
Sbjct: 407 SLGLNRSLEEVDLLGNRFTGEIPPHLCHGQ-KLRLFILGSNQLHGKIPASIRQCKTLERV 465

Query: 373 DLSNNSFMKKSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPC 431
            L +N        F   L L  ++L  N  +G++P+S+ +CK L  ++L  N+ +   P 
Sbjct: 466 RLEDNKLSGVLPEFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPP 525

Query: 432 WLYDAPSL 439
            L +  SL
Sbjct: 526 ELGNLQSL 533

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 231/530 (43%), Gaps = 111/530 (20%)

Query: 10  CDWSGVDCDEAGHVIGLDLSTESISGGIEN----------------------AASLFSLH 47
           C W+GV CD  G+V  L LS  ++SG + +                        SL +L 
Sbjct: 66  CHWTGVHCDANGYVAKLLLSNMNLSGNVSDQIQSFPSLQALDLSNNAFESSLPKSLSNLT 125

Query: 48  YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQ 107
            L+ ++++  SF GT  P  L   + LT++N S   F+G +P  + +   L  LDF    
Sbjct: 126 SLKVIDVSVNSFFGT-FPYGLGMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGGY 184

Query: 108 FSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN----------------AS 151
           F GS+ S  +++L NL +  LS N+  G +P+ + E                        
Sbjct: 185 FEGSVPS-SFKNLKNLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFGK 243

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
            + L  LDL+   L G IP S+ +LK+LT++ L  N L G +   ++  + +L  LDLS 
Sbjct: 244 LTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLP-RELGGMTSLVFLDLSD 302

Query: 212 NSLAVDESSRNYSFSPMLELLNLAS--------CKLREIPNLK----------------- 246
           N +   E          L+LLNL           K+ E+PNL+                 
Sbjct: 303 NQIT-GEIPMEVGELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHL 361

Query: 247 -NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLV--GFQGP-----YSIPA 298
              S L++L +S N++S +IP+ +        +  NL+  +L    F G      +S P 
Sbjct: 362 GKNSPLKWLDVSSNKLSGDIPSGL-------CYSRNLTKLILFNNSFSGQIPEEIFSCPT 414

Query: 299 LRFIDLSSHQLRGNI----HQLPNNLIYIDFSNNNFTSSIPADTG-----NFM------- 342
           L  + +  + + G+I      LP  L +++ + NN T  IP D       +F+       
Sbjct: 415 LVRVRIQKNHISGSIPAGSGDLP-MLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHL 473

Query: 343 ----------PRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL-- 390
                     P L+ F A++N   G IP  + +  +LS+LDLS N F       +     
Sbjct: 474 SSLSSSIFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEK 533

Query: 391 LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           L +L+L  N+L G +PK++A   ML VL+L NN  +   P  L  +P+L 
Sbjct: 534 LVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLGASPTLE 583

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 209/434 (48%), Gaps = 28/434 (6%)

Query: 8   DCCDWSGVDCDEAG-HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPS 66
           D C W GV CD    +V+ L+LS  ++ G I +A  L  L  L+S++L      G QIP 
Sbjct: 59  DFCSWRGVFCDNVSLNVVSLNLSNLNLGGEISSA--LGDLMNLQSIDLQGNKLGG-QIPD 115

Query: 67  KLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA 126
           ++ N  SL Y++ S     G IP  IS + +L  L+   NQ +G I +     + NL   
Sbjct: 116 EIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPAT-LTQIPNLKTL 174

Query: 127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSS 186
            L+ N L G IPR ++         +  L  L L GN L G++   + +L  L    +  
Sbjct: 175 DLARNQLTGEIPRLLYW--------NEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRG 226

Query: 187 NNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPNL 245
           NNL GT+  + I N  +   LD+SYN +       N  F   +  L+L   KL   IP +
Sbjct: 227 NNLTGTIP-ESIGNCTSFEILDVSYNQIT-GVIPYNIGFL-QVATLSLQGNKLTGRIPEV 283

Query: 246 KNQSQ-LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPY--SIPALRFI 302
               Q L  L LS+N+++  IP  +  +S  G   L L  N L G   P   ++  L ++
Sbjct: 284 IGLMQALAVLDLSDNELTGPIPPILGNLSFTG--KLYLHGNKLTGQIPPELGNMSRLSYL 341

Query: 303 DLSSHQLRGNI-HQLPN--NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGII 359
            L+ ++L G I  +L     L  ++ +NNN    IP++  +    L  F    N L+G +
Sbjct: 342 QLNDNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISS-CAALNQFNVHGNFLSGAV 400

Query: 360 PASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEV 417
           P    N  +L+ L+LS+NSF  K  A L  +  L TLDL+GN   G++P ++ + + L +
Sbjct: 401 PLEFRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSGSIPLTLGDLEHLLI 460

Query: 418 LNLGNNQFSDKFPC 431
           LNL  N  +   P 
Sbjct: 461 LNLSRNHLNGTLPA 474

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 212/442 (47%), Gaps = 38/442 (8%)

Query: 5   QSTDCCDWSGVDCDEAGH-VIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQ 63
            ++D C W GV CD   + V+ L+LS+ ++ G I  A     L  L+S++L      G Q
Sbjct: 54  HNSDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIG--DLRNLQSIDLQGNKLAG-Q 110

Query: 64  IPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL 123
           IP ++ N +SL YL+LS+    G IP  IS + +L  L+   NQ +G + +     + NL
Sbjct: 111 IPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPAT-LTQIPNL 169

Query: 124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLL 183
               L+ N L G I R ++         +  L  L L GN L G++   + +L  L    
Sbjct: 170 KRLDLAGNHLTGEISRLLYW--------NEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFD 221

Query: 184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EI 242
           +  NNL GT+  + I N  +   LD+SYN +   E   N  F   +  L+L   +L   I
Sbjct: 222 VRGNNLTGTIP-ESIGNCTSFQILDISYNQIT-GEIPYNIGFL-QVATLSLQGNRLTGRI 278

Query: 243 PNLKNQSQ-LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA--- 298
           P +    Q L  L LS+N++   IP  +  +S  G   L L  N+L G      IP+   
Sbjct: 279 PEVIGLMQALAVLDLSDNELVGPIPPILGNLSFTG--KLYLHGNMLTG-----PIPSELG 331

Query: 299 ----LRFIDLSSHQLRGNI-HQLPN--NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAA 351
               L ++ L+ ++L G I  +L     L  ++ +NN     IP++  +    L  F   
Sbjct: 332 NMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISS-CAALNQFNVH 390

Query: 352 NNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSI 409
            N L+G IP +  N  +L+ L+LS+N+F  K    L  +  L  LDL+GN   G++P ++
Sbjct: 391 GNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIPLTL 450

Query: 410 ANCKMLEVLNLGNNQFSDKFPC 431
            + + L +LNL  N  S + P 
Sbjct: 451 GDLEHLLILNLSRNHLSGQLPA 472

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
359481300	1054	PREDICTED: leucine-rich repeat receptor	0.947	0.395	0.445	3e-86
359481304	1057	PREDICTED: LRR receptor-like serine/thre	0.95	0.395	0.438	3e-85
359481302	988	PREDICTED: leucine-rich repeat receptor	0.934	0.415	0.437	6e-80
147806063	1032	hypothetical protein VITISV_032508 [Viti	0.947	0.404	0.431	1e-79
147770395	1003	hypothetical protein VITISV_004262 [Viti	0.934	0.409	0.431	4e-79
34761800	1138	verticillium wilt disease resistance pro	0.943	0.364	0.424	5e-79
65332099	1051	verticillium wilt disease resistance pro	0.936	0.392	0.416	7e-77
147806065	738	hypothetical protein VITISV_032510 [Viti	0.931	0.555	0.426	2e-76
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.95	0.390	0.425	4e-76
37956237	1051	resistance protein SlVe1 precursor [Sola	0.945	0.395	0.417	4e-76

>gi|359481300|ref|XP_002269481.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 209/469 (44%), Positives = 269/469 (57%), Gaps = 52/469 (11%)

Query: 19  EAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLN 78
           + G +  L LS    SG + N  S+ +L  L  + LA   F+G  IP+ +AN++ L YL+
Sbjct: 293 QGGCLETLVLSVTKFSGKLPN--SIANLKRLARIELADCDFSGP-IPTVMANLTQLVYLD 349

Query: 79  LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIP 138
            S   F+G IP   S    L  +D S N  +G ISS  W   +NLV      NSL GS+P
Sbjct: 350 FSHNKFSGAIP-SFSLSKNLTLIDLSHNNLTGQISSSHWVGFVNLVTIDFCYNSLYGSLP 408

Query: 139 RSMFEFPI-----------------FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181
             +F  P                  F   SS  +DTLDLSGN L G IPVS+F+L+ L  
Sbjct: 409 MPLFSLPSLQKIKLNNNQFSGPFGEFPATSSHPMDTLDLSGNNLEGPIPVSLFDLQHLNI 468

Query: 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYS--FSPMLELLNLASCKL 239
           L LSSN  +GTV+L +   LGNL  L LSYN+L+++ S  N +    P+L  L LASCKL
Sbjct: 469 LDLSSNKFNGTVELSQFQKLGNLTTLSLSYNNLSINPSRSNPTSPLLPILSTLKLASCKL 528

Query: 240 REIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS--IP 297
           R +P+L +QS L  L LS+NQI  +IPNWIW++    L  LNLSHNLL G Q P S   P
Sbjct: 529 RTLPDLSSQSMLVILDLSQNQIPGKIPNWIWKIGNGFLSHLNLSHNLLEGLQEPLSNLPP 588

Query: 298 ALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG 357
            L  +DL S+QLRG I   P++  Y+D+SNN FTSSIP D G +M    +F  + N +TG
Sbjct: 589 FLSTLDLHSNQLRGPIPTPPSS-TYVDYSNNRFTSSIPDDIGTYMNVTVFFSLSKNNITG 647

Query: 358 IIPASLCNATTLSLLDLSNNSFMKKSDAFL--------------------------NCLL 391
           IIPAS+CNA  L +LD S+NS   K  + L                          +CLL
Sbjct: 648 IIPASICNAHYLQVLDFSDNSLSGKIPSCLIENGDLAVLNLRRNKFKGTIPGEFPGHCLL 707

Query: 392 QTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           QTLDLNGN L+G +P+S+ANCK LEVLNLGNN+ +D FPCWL +  SL 
Sbjct: 708 QTLDLNGNLLEGKIPESLANCKALEVLNLGNNRMNDIFPCWLKNISSLR 756

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481304|ref|XP_002270356.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 206/470 (43%), Positives = 272/470 (57%), Gaps = 52/470 (11%)

Query: 19  EAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLN 78
           + G +  L LS    SG + +  S+  L  L  + LAR +F+G  IPS +AN++ L YL+
Sbjct: 294 QGGSLRTLVLSDTKFSGHMPD--SIGKLEMLSWIELARCNFSGP-IPSSIANLTRLLYLD 350

Query: 79  LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIP 138
           LS  GF G IP    S   L  ++ S N F+G I S  WE  LNL+   L  N L+G +P
Sbjct: 351 LSSNGFTGSIP-SFRSSKNLTHINLSRNYFTGQIISHHWEGFLNLLNLDLHQNLLHGDLP 409

Query: 139 RSMFEFPI-----------------FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181
            S+F  P                  FS  SS  L+ LDLS N L+GSIP+SVF+L+ L  
Sbjct: 410 LSLFSHPSLQKIQLNQNQFSGQLNEFSVVSSFVLEVLDLSSNNLQGSIPLSVFDLRALRV 469

Query: 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKL 239
           L LS NN+ GT++L K   LGNL  L LS+N L+++  S N SFS  P    L LASC L
Sbjct: 470 LELSFNNVSGTLELSKFQELGNLTTLSLSHNKLSINVDSFNSSFSKSPHFTTLKLASCNL 529

Query: 240 REIPNLKNQSQ-LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS--I 296
           +  P+L+N S+ L YL LS+NQI  EIP+WIW +    L  LNLSHNLLV  Q P+    
Sbjct: 530 KRFPDLRNNSKFLGYLDLSQNQIQGEIPHWIWMIGNSFLVHLNLSHNLLVDLQEPFPNLP 589

Query: 297 PALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT 356
           P L  +DL S+ LRG I   P    Y+D+SNN+F SSIP D G+++  + +F  + N ++
Sbjct: 590 PYLFTLDLHSNLLRGRIPTPPQFSSYVDYSNNSFISSIPEDIGSYISYVIFFSLSKNNIS 649

Query: 357 GIIPASLCNATTLSLLDLSNNSFMKKSDAFL--------------------------NCL 390
           GIIP S+CNAT + +LDLS+N+   +  + L                          NC+
Sbjct: 650 GIIPESICNATNVQVLDLSDNALSGEIPSCLIENEALAVLNLRRNMFSGTISGNFPGNCI 709

Query: 391 LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           L TLDLNGN L+GT+P+S+ANCK LEVLNLGNN+  DKFPCWL +  SL 
Sbjct: 710 LHTLDLNGNLLEGTIPESVANCKELEVLNLGNNRIDDKFPCWLKNMSSLR 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481302|ref|XP_003632605.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 202/462 (43%), Positives = 259/462 (56%), Gaps = 51/462 (11%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L LS    SG + +  S+ +L  L  + LA  +F+G  IP+ +AN++ L Y++LS   F 
Sbjct: 321 LVLSDTKFSGKVPD--SIGNLKRLTRIELAGCNFSGP-IPNSMANLTQLVYMDLSGNAFF 377

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFE-- 143
           G +P   S    L  +D S N  +G I S  W+ L NLV   L +NSLNGS+P  +F   
Sbjct: 378 GPVP-SFSLSKNLTRIDLSHNHLAGQILSSHWDGLENLVTLDLRNNSLNGSLPMHLFSLS 436

Query: 144 ---------------FPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNN 188
                          F  F   S S LDTLDLS N L G IPVS+F+L+ L  L LS N 
Sbjct: 437 SLQKIQLSNNQFSGPFSEFEVKSFSVLDTLDLSSNNLEGPIPVSLFDLQHLNILDLSFNK 496

Query: 189 LHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLK 246
            +GTV+L     L NL  L LSYN+L+++ S RN +   +  L  L LASCKLR +P+L 
Sbjct: 497 FNGTVELSSYQKLRNLFTLSLSYNNLSINASVRNPTLPLLSNLTTLKLASCKLRTLPDLS 556

Query: 247 NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS--IPALRFIDL 304
            QS L YL LS+NQI   IPNWIW++    L  LNLSHNLL   Q P+S   P L  +DL
Sbjct: 557 TQSGLTYLDLSDNQIHGTIPNWIWKIGNGSLMHLNLSHNLLEDLQEPFSNFTPDLSSLDL 616

Query: 305 SSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLC 364
            S+QL G I   P    Y+D+SNN+F SSIP D G +M    +F  + N +TG IP S+C
Sbjct: 617 HSNQLHGQIPTPPQFSSYVDYSNNSFNSSIPDDIGIYMSFALFFSLSKNNITGSIPRSIC 676

Query: 365 NATTLSLLDLSNNSFMKK---------------------SDAFL-----NCLLQTLDLNG 398
           NAT L +LD S+N+   K                     S A L      CLLQTLDLN 
Sbjct: 677 NATYLRVLDFSDNTLSGKIPSCLIENGNLAVLNLRRNKFSGAILWEFPGECLLQTLDLNR 736

Query: 399 NRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           N L+G +P+S+ NCK LEVLNLGNN+ +D FPCWL +  SL 
Sbjct: 737 NLLRGKIPESLGNCKALEVLNLGNNRMNDNFPCWLKNISSLR 778

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806063|emb|CAN76702.1| hypothetical protein VITISV_032508 [Vitis vinifera]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 203/470 (43%), Positives = 263/470 (55%), Gaps = 53/470 (11%)

Query: 19  EAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLN 78
           + G +  L LS    SG +    S+ +L  L  + LA   F+G  IP+ +A+++ L YL+
Sbjct: 272 QNGSLGTLVLSDTKFSGKV--PYSIGNLKXLTRIELAGCDFSGP-IPNSMADLTQLVYLD 328

Query: 79  LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIP 138
           LS+  F+G IP   S    L  ++ S N  +G ISS  W+ L+NLV   L DNSLNGS+P
Sbjct: 329 LSNNKFSGSIP-PFSLSKNLTRINLSHNYLTGPISSSHWDGLVNLVTLDLRDNSLNGSLP 387

Query: 139 RSMFEFP-----------------IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181
             +F  P                  FS    S L+TLD S N L G IPVSVF+L  L  
Sbjct: 388 MLLFSLPSLQKIQLSNNKFSGPLSKFSVVPFSVLETLDSSSNNLEGPIPVSVFDLHCLNI 447

Query: 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLE---LLNLASCK 238
           L LSSN  +GTV+L     LGNL+ L LSYN L+ + S  N + SP+L     L LASCK
Sbjct: 448 LDLSSNKFNGTVELSSFQKLGNLSTLSLSYNFLSTNASVGNPT-SPLLSNLTTLKLASCK 506

Query: 239 LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS--I 296
           L  +P+L  QS+L +L LS+NQI   IPNWIW++    L  LNLSHNLL   Q  +S   
Sbjct: 507 LXTLPDLSTQSRLTHLDLSDNQIRGSIPNWIWKIGNGSLMHLNLSHNLLEDLQETFSNFT 566

Query: 297 PALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT 356
           P L  +DL S+QL G I   P    Y+D+SNN+F SSIP D G +M    +F    N +T
Sbjct: 567 PYLSILDLHSNQLHGQIPTPPQFSKYVDYSNNSFNSSIPDDIGTYMSFTIFFSLXKNNIT 626

Query: 357 GIIPASLCNATTLSLLDLSNNSF---------MKKSDAFLN-----------------CL 390
           G IP S+CNAT L +LD S+N+F           ++ A LN                 CL
Sbjct: 627 GSIPRSICNATYLQVLDFSDNAFSGEIPSCLIQNEALAVLNLGRNKFVGTIXGELXHKCL 686

Query: 391 LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           L+TLDL+ N LQG +P+S+ NCK LE+LNLGNNQ  D FPCWL +  SL 
Sbjct: 687 LRTLDLSENLLQGNIPESLVNCKELEILNLGNNQIDDIFPCWLKNISSLR 736

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770395|emb|CAN78148.1| hypothetical protein VITISV_004262 [Vitis vinifera]

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 200/463 (43%), Positives = 262/463 (56%), Gaps = 52/463 (11%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LDLS   +  G +   S+ +L  L  + LA   F+G  IP+ +A+++ L YL+LS+  F+
Sbjct: 255 LDLSNNKLLQG-KVPYSIGNLKRLTRIELAGCDFSGP-IPNSMADLTQLVYLDLSNNKFS 312

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
           G IP   S    L  ++ S N  +G ISS  W+ L+N+V   L DNSLNG++P  +F  P
Sbjct: 313 GSIP-PFSLFKNLTRINLSHNYLTGPISSSHWDGLVNVVTLDLRDNSLNGNLPMLLFSLP 371

Query: 146 -----------------IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNN 188
                             FS    S L+TLDLS N L G IPVSVF+L  L  L LSSN 
Sbjct: 372 SLQKIQLSNNKFSGPLSKFSVVPFSVLETLDLSSNNLEGPIPVSVFDLHCLNILDLSSNK 431

Query: 189 LHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLE---LLNLASCKLREIPNL 245
            +GTV+L     LGNL+ L LSYN L+ + S  N + SP+L     L  ASCKLR +P+L
Sbjct: 432 FNGTVELSNFQKLGNLSTLSLSYNFLSTNASVGNLT-SPLLSNLTTLKFASCKLRTLPDL 490

Query: 246 KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS--IPALRFID 303
             QS+L +L LS+NQI   IPNWIW++    L  LNLSHNLL   Q  +S   P L  +D
Sbjct: 491 STQSRLTHLDLSDNQIRGSIPNWIWKIGNGSLMHLNLSHNLLEDLQETFSNFTPYLSILD 550

Query: 304 LSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASL 363
           L S+QL G I   P    Y+D+SNN+F SSIP D G +M    +F  + N +TG IP S+
Sbjct: 551 LHSNQLHGQIPTPPQFSKYVDYSNNSFNSSIPDDIGTYMSFTIFFSLSKNNITGSIPRSI 610

Query: 364 CNATTLSLLDLSNNSF---------MKKSDAFLN-----------------CLLQTLDLN 397
           CNAT L +LD S+N+F           ++ A LN                 CLL+TL L+
Sbjct: 611 CNATYLQVLDFSDNAFSGEIPSCLIQNEALAVLNLGRNKFVGTIPGELPHKCLLRTLYLS 670

Query: 398 GNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
            N LQG +P+S+ NCK LE+LNLGNNQ  D FPCWL +  SL 
Sbjct: 671 ENLLQGNIPESLVNCKELEILNLGNNQIDDIFPCWLKNISSLR 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34761800|gb|AAQ82053.1| verticillium wilt disease resistance protein precursor [Solanum torvum]

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 198/466 (42%), Positives = 267/466 (57%), Gaps = 51/466 (10%)

Query: 21  GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLS 80
           G +  + LS  S SG +  + S  +L  L  L L+  +FNG  IPS +AN+++L YL+ S
Sbjct: 308 GSLRRISLSYTSFSGSLPESIS--NLQNLSRLELSNCNFNGP-IPSTMANLTNLVYLDFS 364

Query: 81  DAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRS 140
              F G IP       +L  LD S N  +G +S   +E L  LVY  L +NSLNG +P  
Sbjct: 365 FNNFTGFIPY-FQRSKKLTYLDLSRNGLTGLLSRAHFEGLSELVYMSLGNNSLNGILPAE 423

Query: 141 MFEFPI-----------------FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLL 183
           +FE P                  F NASSS LDT+DL  N L GSIP S+FE+ +L  L 
Sbjct: 424 IFELPSLQQLSLYSNQFVGQVDEFRNASSSPLDTIDLRNNHLNGSIPKSMFEVGRLKVLS 483

Query: 184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN-YSFS-PMLELLNLASCKLRE 241
           LS N   GTV LD I  L NL+KL+LSYN+L VD SS N  SF+ P L +L LASC+L++
Sbjct: 484 LSFNFFSGTVSLDLIGKLSNLSKLELSYNNLTVDASSSNSTSFAFPQLSILKLASCRLQK 543

Query: 242 IPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIP-ALR 300
            P+LKNQS++ +L LS+NQI   IPNWIW +    L  LNLS N L   + PY+    L 
Sbjct: 544 FPDLKNQSRMIHLDLSDNQIGGAIPNWIWGIGGGALAHLNLSFNHLEYVEQPYNASNNLV 603

Query: 301 FIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360
             DL S+ ++G++   P + IY+D+S+NN  +SIP D GN +    +F  ANN +TG+IP
Sbjct: 604 VFDLHSNNIKGDLPIPPPSAIYVDYSSNNLNNSIPLDIGNSLALASFFSIANNSITGMIP 663

Query: 361 ASLCNATTLSLLDLSNNSFMKK--------------------------SDAF-LNCLLQT 393
            S+CN + L +LDLSNN                                D+F + C L+T
Sbjct: 664 ESICNISYLQVLDLSNNKLSGTIPPCLLHNSTSLGVLNLGNNRLHGVIPDSFPIGCALKT 723

Query: 394 LDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439
           LDL+ N  +G +PKS+ NC +LEVLN+GNN+  D+FPC L ++ SL
Sbjct: 724 LDLSRNTFEGKLPKSLVNCTLLEVLNVGNNRLVDRFPCMLSNSNSL 769

Source: Solanum torvum

Species: Solanum torvum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|65332099|gb|AAY42203.1| verticillium wilt disease resistance protein [Solanum torvum]

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 193/463 (41%), Positives = 264/463 (57%), Gaps = 51/463 (11%)

Query: 21  GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLS 80
           G +  + L   + SG +  + S  +LH L  L L+  +FNG+ IPS +A +++L YL+ S
Sbjct: 311 GSMRRISLRYTNFSGSLPESIS--NLHNLSRLELSNCNFNGS-IPSTMAKLTNLIYLDFS 367

Query: 81  DAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRS 140
              F G IP       +L  LD S N  +G +S   +E L  LVY  L DNSLNG +P  
Sbjct: 368 FNNFTGFIP-YFQRSKKLTYLDLSRNGLTGQLSRAHFEGLSELVYMNLGDNSLNGILPAD 426

Query: 141 MFEFPI-----------------FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLL 183
           +FE P                  F NASSS LDT+DL+ N L GSIP S+ E+ KL  L 
Sbjct: 427 IFELPSLQQLFLYSNQFVGQVDEFRNASSSLLDTIDLNNNNLSGSIPKSMLEVGKLKVLS 486

Query: 184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN-YSFS-PMLELLNLASCKLRE 241
           LSSN   GTV L  I  L NL++L+LSYN+L VD SS N  SF+ P L +L LASC+L +
Sbjct: 487 LSSNFFSGTVPLYLIGKLSNLSRLELSYNNLTVDASSSNSTSFAFPQLNILKLASCRLHK 546

Query: 242 IPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA-LR 300
            P+LKNQS++ +L LS NQI   IPNWIW +    L  LNLS N L   + PY+  + L 
Sbjct: 547 FPDLKNQSRMIHLDLSNNQIQWAIPNWIWGIGGGALAHLNLSFNHLESVEQPYNASSNLV 606

Query: 301 FIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360
             DL S+ ++G++   P + IY+D+S+NN ++S+P D GN +    +F  ANN +TGIIP
Sbjct: 607 VFDLHSNHIKGDLPIPPPSAIYVDYSSNNLSNSMPPDIGNSLALASFFSVANNDITGIIP 666

Query: 361 ASLCNATTLSLLDLSNNSFMKK--------------------------SDAF-LNCLLQT 393
            S+CN + L +LDLSNN                                D+F + C L+T
Sbjct: 667 ESICNISYLKVLDLSNNKLSGTIPRRLLNNRTALGVLNLGNNRLHGVIPDSFPIGCSLKT 726

Query: 394 LDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDA 436
           LDL+ N  +G +PKS+ NC  LEVLN+G+N+  D+FPC L ++
Sbjct: 727 LDLSRNTFEGKLPKSLFNCTFLEVLNVGHNRLVDQFPCMLRNS 769

Source: Solanum torvum

Species: Solanum torvum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806065|emb|CAN76704.1| hypothetical protein VITISV_032510 [Vitis vinifera]

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 197/462 (42%), Positives = 261/462 (56%), Gaps = 52/462 (11%)

Query: 19  EAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLN 78
           + G +  L LS   + G + N  S+ +L  L S+ LAR  F+G  I + +AN+  L YL+
Sbjct: 237 QNGSLETLVLSDTKLWGKLPN--SMGNLKKLTSIELARCHFSG-PILNSVANLPQLIYLD 293

Query: 79  LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIP 138
           LS+  F+G IP   S   RL  ++ S+N   G I    WE L+NL+   L  N++ G++P
Sbjct: 294 LSENKFSGPIP-SFSLSKRLTEINLSYNNLMGPIP-FHWEQLVNLMNLDLRYNAITGNLP 351

Query: 139 RSMFEFP-----------------IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181
            S+F  P                 I  NASSS L TL LS N L G IP SVFEL+ L+ 
Sbjct: 352 PSLFSLPSLQRLRLDNNQISGQFKILLNASSSRLSTLGLSSNNLXGPIPDSVFELRCLSF 411

Query: 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKL 239
           L LSSN  +G ++L K   LGNL  L LSYN+L+++ +  N S S  PM   L LASC+L
Sbjct: 412 LDLSSNKFNGKIELSKFKKLGNLTXLSLSYNNLSINATLCNLSPSILPMFTTLRLASCRL 471

Query: 240 REIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI--P 297
             +P+L  QS L +L LS+NQI   IP+WI ++    L  LNLSHNLL     P+    P
Sbjct: 472 TTLPDLSGQSSLTHLDLSQNQIHGNIPSWIXKIGNGXLVYLNLSHNLLEDLHEPFXTFTP 531

Query: 298 ALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG 357
            L  +DL S+QL G I   P    Y+D+SNN+FTSSIP D G ++    +F  + N +TG
Sbjct: 532 YLSILDLHSNQLHGQIPTPPIFCSYVDYSNNSFTSSIPEDIGTYIFFTIFFSLSKNNITG 591

Query: 358 IIPASLCNATTLSLLDLSNNSFMKKSDAFL--------------------------NCLL 391
            IPAS+CNA+ L +LD S+N+      + L                          NCLL
Sbjct: 592 XIPASICNASYLRVLDFSDNALSGMIPSCLIGNEILEVLNLRRNKLSATIPGEFSGNCLL 651

Query: 392 QTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWL 433
           +TLDLNGN L+G +P+S+ANCK LEVLNLGNNQ SD FPC L
Sbjct: 652 RTLDLNGNLLEGKIPESLANCKELEVLNLGNNQMSDFFPCSL 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 257/468 (54%), Gaps = 50/468 (10%)

Query: 19  EAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLN 78
           + G +  L L     SG + N  S+ +L  L  + LAR +F+G  IP+  AN++ L YL+
Sbjct: 312 QNGSLETLVLPDTKFSGKVPN--SIGNLKRLTRIELARCNFSGP-IPNSTANLAQLVYLD 368

Query: 79  LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIP 138
           LS+  F+G IP   S    L  ++ S N  +G I S   + L+NLV   L DNSLNGS+P
Sbjct: 369 LSENKFSGPIP-PFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVILDLRDNSLNGSLP 427

Query: 139 RSMFEFP----------IFSNASS------SALDTLDLSGNRLRGSIPVSVFELKKLTSL 182
             +F  P           FS   S      S LDTLDLS N L G IPVS+F+L+ L  L
Sbjct: 428 MPLFSLPSLQKIQLSNNQFSGPLSKFSVVPSVLDTLDLSSNNLEGQIPVSIFDLQCLNIL 487

Query: 183 LLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDES--SRNYSFSPMLELLNLASCKLR 240
            LSSN  +GTV L     LGNL  L LSYN+L+++ S  +        L  L LASCKLR
Sbjct: 488 DLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKLASCKLR 547

Query: 241 EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS--IPA 298
            +P+L  QS+L YL LS+NQI   IPNWIW++    L  LNLSHNLL   Q P S   P 
Sbjct: 548 TLPDLSTQSRLTYLDLSDNQICGNIPNWIWKIGNCSLAHLNLSHNLLEDLQEPLSNFTPY 607

Query: 299 LRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358
           L  +DL S+QL G I   P    Y+D+S+N FTSSIP   G ++    +F  + N +TG 
Sbjct: 608 LSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFSLSKNNITGS 667

Query: 359 IPASLCNATTLSLLDLSNNSFMKKSDAFL--------------------------NCLLQ 392
           IP S+CNAT L +LD S+N    K  + L                          NCLLQ
Sbjct: 668 IPRSICNATYLQVLDFSDNHLSGKIPSCLIEYGTLGVLNLRRNNFSGAIPGKFPVNCLLQ 727

Query: 393 TLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           TLDL+ N ++G +P S+ANC  LEVLNLGNNQ +  FPC L +  +L 
Sbjct: 728 TLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLR 775

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37956237|gb|AAP20228.1| resistance protein SlVe1 precursor [Solanum lycopersicoides] gi|37956239|gb|AAP20229.1| resistance protein SlVe1 precursor [Solanum lycopersicoides]

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 195/467 (41%), Positives = 267/467 (57%), Gaps = 51/467 (10%)

Query: 21  GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLS 80
           G +  + LS  + SG +  + S  +L  L  L L+  +FNG  IPS +AN+ +L YL+ S
Sbjct: 311 GSLRRISLSYTNFSGSLPESIS--NLQNLSRLGLSDFNFNGP-IPSTMANLINLGYLDFS 367

Query: 81  DAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRS 140
              F G IP       +L  LD S N  +G +S   +E L  LVY  + DNSLNG++P  
Sbjct: 368 RNNFTGSIP-HFQRSKKLTYLDLSRNGLTGLLSRAHFEGLSELVYINVGDNSLNGTLPAY 426

Query: 141 MFEFPI-----------------FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLL 183
           +FE P                  F NASSS LDT+DL  N L GSIP S FE+ +L  L 
Sbjct: 427 IFELPSLQQLFLNSNQFVGQVDEFRNASSSLLDTVDLRNNHLNGSIPKSTFEIGRLKVLS 486

Query: 184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDE--SSRNYSFSPMLELLNLASCKLRE 241
           LSSN   GTV LD I  L NL++L+LSYN+L VD   S+      P L +L LASC+L++
Sbjct: 487 LSSNFFSGTVTLDLIGRLNNLSRLELSYNNLTVDASSSNSTSFTFPQLSILKLASCRLQK 546

Query: 242 IPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA-LR 300
            P+L NQS + +L LS+NQI   IPNWIW +   GL  LNLS N L   + PY+  + L 
Sbjct: 547 FPDLMNQSMMIHLDLSDNQIRGAIPNWIWGIGDQGLTHLNLSFNQLEYMEQPYTASSNLV 606

Query: 301 FIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360
            +DL +++L+G++   P++ IY+D+S+NN  +SIP D G  +    +F  ANNG+TGIIP
Sbjct: 607 VLDLHTNRLKGDLLIPPSSPIYVDYSSNNSNNSIPLDIGKSLGFASFFSVANNGITGIIP 666

Query: 361 ASLCNATTLSLLDLSNNSFMKK--------------------------SDAF-LNCLLQT 393
            S+C+ + L +LD SNN+                               D+F ++C L T
Sbjct: 667 ESICDVSYLQILDFSNNALSGTIPPCLLEYSTTLGVLNLGNNRLHGVIPDSFPIDCALNT 726

Query: 394 LDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           LDL+ N+LQG +PKS+ NCK+LEVLN GNN+  D FPC L ++ SL 
Sbjct: 727 LDLSENKLQGRLPKSLVNCKLLEVLNAGNNRLVDHFPCMLRNSNSLR 773

Source: Solanum lycopersicoides

Species: Solanum lycopersicoides

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.515	0.222	0.325	1.2e-46
TAIR|locus:2046535	740	RLP28 "receptor like protein 2	0.952	0.566	0.288	5.9e-42
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.915	0.405	0.311	8.3e-42
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.934	0.485	0.302	3e-41
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.909	0.495	0.296	6.1e-35
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.913	0.451	0.307	2.2e-38
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.938	0.574	0.290	9.7e-37
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.795	0.392	0.286	1.4e-36
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.906	0.448	0.284	3.1e-36
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.975	0.547	0.298	7.6e-36

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
 Identities = 79/243 (32%), Positives = 126/243 (51%)

Query:   199 LNL-GNLAKLDLSYNS-LAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLY 255
             LN+  +L +L   Y S + +  ++    F   LE L+L SC + + P  ++    LQ L 
Sbjct:   488 LNVFSSLKQLGTLYISRIPISTTNITSDFPSNLEYLSLRSCNITDFPEFIRKGRNLQILD 547

Query:   256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA-----LRFIDLSSHQLR 310
             LS N+I  ++P+W+WR+    L+ ++LS+N L GF    S+ A     L  +DLSS+  +
Sbjct:   548 LSNNKIKGQVPDWLWRMPT--LNSVDLSNNSLSGFH--VSVKASPESQLTSVDLSSNAFQ 603

Query:   311 GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTXX 370
             G +     +L Y   SNNNFT  IP      +  L     +NN L G +P  L    +  
Sbjct:   604 GPLFLPSKSLRYFSGSNNNFTGKIPRSICG-LSSLEILDLSNNNLNGSLPWCLETLMSSL 662

Query:   371 XXXXXXXXFMKKS--DAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
                      +  S  + F+N   L++LD++ NR++G +P S+  C  LEVLN+G+N+ +D
Sbjct:   663 SDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRIND 722

Query:   428 KFP 430
              FP
Sbjct:   723 MFP 725

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046535 RLP28 "receptor like protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 5.9e-42, P = 5.9e-42
 Identities = 129/447 (28%), Positives = 208/447 (46%)

Query:    13 SGVDCDEA-GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANI 71
             +GV CD + G V  L L+   +SG +   +SLF  H LR LNL+  +F  T  PS+  N+
Sbjct:    66 NGVWCDNSTGVVTKLQLNA-CLSGTLNPNSSLFWFHQLRFLNLSHNNFTSTSFPSEFGNL 124

Query:    72 SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN 131
             + +  L+LS   F G +P   S++++L  L  S NQ +G    +  ++L NL +    +N
Sbjct:   125 NKVEVLDLSFNSFTGQVPSSFSNLSQLTELHLSNNQLTGGFPQV--QNLTNLSHLDFENN 182

Query:   132 SLNGSIPRSMFEFPIFXXXXXX----XXXXXXXXGNRLR----------GSIPVSVFEXX 177
               +G++P S+   P                     ++L           G I   + +  
Sbjct:   183 KFSGTVPSSLLMMPFLSYLNLYGNHFTGSIEVSTSSKLEILYLGLKPFEGQILEPISKLI 242

Query:   178 XXXXXXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM-LELLNLAS 236
                            + L+   +L +L  LDLS NS++   S R+  + P+ LE L L  
Sbjct:   243 NLKRLELSFLNISYPLDLNLFSSLKSLTYLDLSGNSIS-PRSLRSDLYIPLTLEKLLLEQ 301

Query:   237 CKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS 295
             C + E PN LK   +L+Y+ +S N+I+ +IP W+WR+    L  ++L++N   GF+G   
Sbjct:   302 CGIIEFPNILKTLQKLEYIDMSNNRINGKIPEWLWRLP--RLRSMSLANNSFNGFEGSTD 359

Query:   296 I---PALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAAN 352
             +    ++  + + S+ ++G +  LP ++       NNF+  IP    N    L       
Sbjct:   360 VLVNSSMEILFMHSNNIQGALPNLPLSIKAFSAGYNNFSGEIPLSICN-RSSLAALSLPY 418

Query:   353 NGLTGIIPASLCNATTXXXXXXXXXXFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANC 412
             N  TG IP  L N T            +  +       LQTLD+  N + GT+P+S+ NC
Sbjct:   419 NNFTGKIPQCLSNLTFVHLRKNNLEGSIPDT-LCAGDSLQTLDIGFNLISGTLPRSLLNC 477

Query:   413 KMLEVLNLGNNQFSDKFPCWLYDAPSL 439
               LE L++ NN+  D FP WL   P+L
Sbjct:   478 SSLEFLSVDNNRIKDTFPFWLKALPNL 504

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 8.3e-42, P = 8.3e-42
 Identities = 133/427 (31%), Positives = 200/427 (46%)

Query:    22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD 81
             H+  L L   + SG I +  SL SL +L +L L+  +F G +IPS ++N+  LT  ++SD
Sbjct:   303 HLTSLKLQQSAFSGRIPS--SLRSLSHLSNLVLSENNFVG-EIPSSVSNLKQLTLFDVSD 359

Query:    82 AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSM 141
                 G+ P  + ++ +L  +D   N F+G +       L NL +    DNS  GSIP S+
Sbjct:   360 NNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTI-SQLSNLEFFSACDNSFTGSIPSSL 418

Query:   142 FEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDKILNL 201
             F   I                  ++    +S+                   V LD  L+L
Sbjct:   419 FN--ISSLTTLGLSYNQLNDTTNIKN---ISLLHNLQRLLLDNNNFKA-SQVDLDVFLSL 472

Query:   202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQ 260
               L  L LS   L+    + +  FS  LE L L+ C + E P  ++NQ  L  + LS N 
Sbjct:   473 KRLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNIIEFPEFIRNQRNLSSIDLSNNN 532

Query:   261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALR-----FIDLSSHQLRGNIHQ 315
             I  ++PNW+WR+    L  ++LS+N L+GF G  S+ AL       +DLSS+  +G +  
Sbjct:   533 IKGQVPNWLWRLPE--LSTVDLSNNSLIGFNG--SLKALSGSKIVMLDLSSNAFQGPLFM 588

Query:   316 LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTXXXXXXX 375
              P  + Y   S NNFT  IP         L     +NN L G+IP  L    +       
Sbjct:   589 PPRGIQYFLGSYNNFTGYIPPSICGLANPL-ILDLSNNNLHGLIPRCLEAQMSSLSVLNL 647

Query:   376 XXXFMKKS--DAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCW 432
                 +  S  + F+N  +L +LD++ N L+G +P S+A C  LE+LN+ +N  +D FP W
Sbjct:   648 RNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFPFW 707

Query:   433 LYDAPSL 439
             L   P L
Sbjct:   708 LNSLPKL 714

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
 Identities = 132/437 (30%), Positives = 187/437 (42%)

Query:     3 WRQSTDCCDWSGVDC-DEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNG 61
             W +STDCC W+GV C D++G VI LD+    ++  ++  +SLF L YLR L+L   +  G
Sbjct:    65 WNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG 124

Query:    62 TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
              +IPS L N+S LT +NL    F G IP  I ++ +L  L  + N  +G I S    +L 
Sbjct:   125 -EIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPS-SLGNLS 182

Query:   122 NLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXXXX 181
              LV   L  N L G IP S+ +                   N L G IP S+        
Sbjct:   183 RLVNLELFSNRLVGKIPDSIGDLK--------QLRNLSLASNNLIGEIPSSLGNLSNLVH 234

Query:   182 XXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE 241
                      G V    I NL  L  +    NSL+      +++    L +  L+S     
Sbjct:   235 LVLTHNQLVGEVPAS-IGNLIELRVMSFENNSLS-GNIPISFANLTKLSIFVLSSNNFTS 292

Query:   242 -IP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG---FQGPYSI 296
               P ++     L+Y  +S N  S   P  +  + +  L  + L  N   G   F    S 
Sbjct:   293 TFPFDMSIFHNLEYFDVSYNSFSGPFPKSL--LLIPSLESIYLQENQFTGPIEFANTSSS 350

Query:   297 PALRFIDLSSHQLRGNIHQLPN---NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANN 353
               L+ + L  ++L G I +  +   NL  +D S+NNFT +IP      +  L    + NN
Sbjct:   351 TKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNN 410

Query:   354 GLTGIIPASLCNATTXXXXXXXXXXFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCK 413
              L G +PA L    T          F   S      L++ LDLN N  QG +P  I    
Sbjct:   411 -LEGEVPACLWRLNTMVLSHNSFSSFENTSQE--EALIEELDLNSNSFQGPIPYMICKLS 467

Query:   414 MLEVLNLGNNQFSDKFP 430
              L  L+L NN FS   P
Sbjct:   468 SLGFLDLSNNLFSGSIP 484

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 6.1e-35, P = 6.1e-35
 Identities = 127/429 (29%), Positives = 197/429 (45%)

Query:    22 HVIGLDLSTESISGGIENAASLF-SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLS 80
             H+  L+LS  + +    +  S F +L+ L  L L+   F G Q+PS  +N+S L  L+LS
Sbjct:    98 HLRYLNLSNNNFTSA--SLPSGFGNLNRLEVLYLSSNGFLG-QVPSSFSNLSQLNILDLS 154

Query:    81 DAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV---LSDNSLNGSI 137
                  G  P  + ++ +L  L  S+N FSG+I S     LL L +     L +N L GSI
Sbjct:   155 HNELTGSFPF-VQNLTKLSILVLSYNHFSGTIPS----SLLTLPFLSSLDLRENYLTGSI 209

Query:   138 PRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDK 197
                  E P                 N   G I   + +                 + L+ 
Sbjct:   210 -----EAP--NSSTSSRLEFMYLGNNHFEGQILEPISKLINLKHLDLSFLKTSYPIDLNL 262

Query:   198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYL 256
               +  +L +L LS NSL     + +      LE L L SC L E P  LKN ++L+++ L
Sbjct:   263 FSSFKSLVRLVLSGNSLLATSITSDSKIPLNLENLVLLSCGLIEFPTILKNLTKLEHIDL 322

Query:   257 SENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI---PALRFIDLSSHQLRGNI 313
             S N+I  ++P W W +    L  +NL +NL    +G   +    ++R +DL+ +  RG  
Sbjct:   323 SNNKIKGKVPEWFWNLP--RLRRVNLFNNLFTDLEGSEEVLVNSSVRLLDLAYNHFRGPF 380

Query:   314 HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTXXXXX 373
              + P ++  +   NN+FT +IP +T N    L     + N LTG IP  L +        
Sbjct:   381 PKPPLSINLLSAWNNSFTGNIPLETCN-RSSLAILDLSYNNLTGPIPRCLSDFQESLIVV 439

Query:   374 XXXXXFMKKS--DAFLN-CLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
                   ++ S  D F +  LL+TLD+  N+L G +P+S+ NC ML  +++ +N+  D FP
Sbjct:   440 NLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFP 499

Query:   431 CWLYDAPSL 439
              WL   P L
Sbjct:   500 FWLKALPDL 508

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.2e-38, P = 2.2e-38
 Identities = 137/446 (30%), Positives = 201/446 (45%)

Query:    23 VIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDA 82
             +I LDLS    SG +   +SLF LH LR LNLA  +F+ + +PSK  N+  L  L LS  
Sbjct:   172 LIVLDLSYNHFSGTLNPNSSLFELHQLRYLNLAFNNFSSS-LPSKFGNLHRLENLILSSN 230

Query:    83 GFAGHIPLQISSMARLVAL-----------------------DFSFNQFSGSISSIRWEH 119
             GF+G +P  IS++ RL  L                       D S+N+F G I S     
Sbjct:   231 GFSGQVPSTISNLTRLTKLYLDQNKLTSSFPLVQNLTNLYELDLSYNKFFGVIPSSLLT- 289

Query:   120 LLNLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXX 179
             L  L +  L +N+L GS+  S                      N   G I   + +    
Sbjct:   290 LPFLAHLALRENNLAGSVEVS-------NSSTSSRLEIMYLGSNHFEGQILEPISKLINL 342

Query:   180 XXXXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM-LELLNLASCK 238
                          + L    +L +L  LDLS NS++    S + S+ P+ LE+L L  C 
Sbjct:   343 KHLDLSFLNTSYPIDLKLFSSLKSLRSLDLSGNSISSASLSSD-SYIPLTLEMLTLRHCD 401

Query:   239 LREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI- 296
             + E PN LK   +L Y+ +S N++  +IP W+W + +  L  + L +N   GFQG   I 
Sbjct:   402 INEFPNILKTLKELVYIDISNNRMKGKIPEWLWSLPL--LQSVTLGNNYFTGFQGSAEIL 459

Query:   297 --PALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNG 354
                ++  + L S+   G +  LP ++     ++N+FTS IP    N    L     + N 
Sbjct:   460 VNSSVLLLYLDSNNFEGALPDLPLSIKGFGVASNSFTSEIPLSICN-RSSLAAIDLSYNN 518

Query:   355 LTGIIPASLCNATTXXXXXXXXXXFMKKSDAFLN-CLLQTLDLNGNRLQGTVPKSIANCK 413
              TG IP  L N              +   DA  +   L+TLD++ NRL G +P+S  NC 
Sbjct:   519 FTGPIPPCLRNLELVYLRNNNLEGSIP--DALCDGASLRTLDVSHNRLTGKLPRSFVNCS 576

Query:   414 MLEVLNLGNNQFSDKFPCWLYDAPSL 439
              L+ L++ NN+  D FP WL   P+L
Sbjct:   577 SLKFLSVINNRIEDTFPFWLKALPNL 602

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 9.7e-37, P = 9.7e-37
 Identities = 128/440 (29%), Positives = 195/440 (44%)

Query:    11 DWSGVDCDEAGHV---IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSK 67
             D++G   D  GH+     L L +  +SG   +   L +L  L  ++L    F G  +PS 
Sbjct:   167 DFTGELPDSMGHLNKLTELHLGSAKLSGNFPSM--LLNLSELTLIDLGSNQFGG-MLPSN 223

Query:    68 LANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127
             ++++S L Y  +    F+G IP  +  +  L +L    N F+G +         NL    
Sbjct:   224 MSSLSKLVYFGIDRNSFSGSIPSSLFMLPSLTSLVLGRNDFNGPLDFGNISSPSNLGVLS 283

Query:   128 LSDNSLNGSIPRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVF-EXXXXXXXXXXX 186
             L +N+ NG IP S+ +                   N  RG +  + F             
Sbjct:   284 LLENNFNGPIPESISKL-------VGLFYLDLSLWNTKRGMVDFNTFLHLKSLTFLDLSY 336

Query:   187 XXXHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-L 245
                   V +     L +L  LDLS  +L +  SS     SPM  L+ L+SC + E PN L
Sbjct:   337 INTRSMVDISIFSPLLSLGYLDLSGINLKI--SSTLSLPSPMGTLI-LSSCNIPEFPNFL 393

Query:   246 KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI----PALRF 301
             +NQ+ L YL +S N+I  ++P W+W  S+  L  +N+S N   GF+GP  +      L  
Sbjct:   394 ENQTTLYYLDISANKIGGQVPQWLW--SLPELQYVNISQNSFSGFEGPADVIQRCGELLM 451

Query:   302 IDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPA 361
             +D+SS+  +     LPN+      S+N F+  IP      +  L     +NN   G IP 
Sbjct:   452 LDISSNTFQDPFPLLPNSTTIFLGSDNRFSGEIPKTICKLVS-LDTLVLSNNNFNGSIPR 510

Query:   362 SL--CNATTXXXXXXXXXXFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
                  N T             +  +  ++  L++LD+  NRL G +PKS+ NC  LE LN
Sbjct:   511 CFEKFNTTLSVLHLRNNNLSGEFPEESISDHLRSLDVGRNRLSGELPKSLINCTRLEFLN 570

Query:   420 LGNNQFSDKFPCWLYDAPSL 439
             + +N  +DKFP WL   P L
Sbjct:   571 VEDNIINDKFPFWLRMLPKL 590

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
 Identities = 105/366 (28%), Positives = 164/366 (44%)

Query:    62 TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
             T     L N+SSLT ++LS   F   +P  +SS+++L A D S N FSG+I S  +  L 
Sbjct:   277 TDFQLMLLNLSSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFM-LP 335

Query:   122 NLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXXXX 181
             +L+   L  N  +G +       P                 N + G IP S+ +      
Sbjct:   336 SLIKLDLGTNDFSGPLKIGNISSP-------SNLQELYIGENNINGPIPRSILKLVGLSA 388

Query:   182 XXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE 241
                      G V     L L +L  LDLS  +L +  SS ++  S M+ L+ L+SC + +
Sbjct:   389 LSLSFWDTGGIVDFSIFLQLKSLRSLDLSGINLNI--SSSHHLPSHMMHLI-LSSCNISQ 445

Query:   242 IPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALR 300
              P  L+NQ+ L +L +S NQI  ++P W+WR+    L  +N++ N   G       P   
Sbjct:   446 FPKFLENQTSLYHLDISANQIEGQVPEWLWRLPT--LRYVNIAQNAFSGELTMLPNPIYS 503

Query:   301 FIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360
             FI  S ++  G I +    +  +  SNNNF+ SIP         L      NN L+G+IP
Sbjct:   504 FI-ASDNKFSGEIPRAVCEIGTLVLSNNNFSGSIPPCFEISNKTLSILHLRNNSLSGVIP 562

Query:   361 ASLCNATTXXXXXXXXXXFMKKSDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
                 +               +   + +NC  LQ L++  NR+  T P  + +   L++L 
Sbjct:   563 EESLHGYLRSLDVGSNRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWLKSLPNLQLLV 622

Query:   420 LGNNQF 425
             L +N+F
Sbjct:   623 LRSNEF 628

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.1e-36, P = 3.1e-36
 Identities = 126/443 (28%), Positives = 200/443 (45%)

Query:    26 LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
             LD+S    SG +   +SLF LH+L  LNL   +F  + +P +  N++ L  L++S   F 
Sbjct:   175 LDVSYNHFSGILNPNSSLFELHHLIYLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFF 234

Query:    86 GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
             G +P  IS++ +L  L    N F+GS+  +  ++L  L    L  N  +G+IP S+F  P
Sbjct:   235 GQVPPTISNLTQLTELYLPLNDFTGSLPLV--QNLTKLSILHLFGNHFSGTIPSSLFTMP 292

Query:   146 IFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDKILNLGNLA 205
                              N L GSI V                   G + L+ I  L NL 
Sbjct:   293 FLSSIYLNK--------NNLSGSIEVPNSSSSSRLEHLYLGKNHLGKI-LEPIAKLVNLK 343

Query:   206 KLDLSY---------------NSLAVDESSRNY---------SFSPM-LELLNLASCKLR 240
             +LDLS+                SL + + S ++         S+ P  LE+L L  C + 
Sbjct:   344 ELDLSFLNTSHPIDLSLFSSLKSLLLLDLSGDWISKASLTLDSYIPSTLEVLRLEHCDIS 403

Query:   241 EIPNL-KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI--- 296
             E PN+ K    L+Y+ LS N+IS + P W+W  S+  L  + ++ NLL GF+G   +   
Sbjct:   404 EFPNVFKTLHNLEYIALSNNRISGKFPEWLW--SLPRLSSVFITDNLLTGFEGSSEVLVN 461

Query:   297 PALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT 356
              +++ + L ++ L G +  LP ++ Y    +N F   IP    N    L     + N  +
Sbjct:   462 SSVQILSLDTNSLEGALPHLPLSINYFSAIDNRFGGDIPLSICN-RSSLDVLDLSYNNFS 520

Query:   357 GIIPASLCNATTXXXXXXXXXXFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLE 416
             G IP  L N              +     +++  L++ D+  NRL G +P+S+ NC  L+
Sbjct:   521 GQIPPCLSNLLYLKLRKNNLEGSIPDK-YYVDTPLRSFDVGYNRLTGKLPRSLINCSALQ 579

Query:   417 VLNLGNNQFSDKFPCWLYDAPSL 439
              L++ +N   D FP +L   P L
Sbjct:   580 FLSVDHNGIKDTFPFYLKALPKL 602

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 7.6e-36, P = 7.6e-36
 Identities = 137/459 (29%), Positives = 200/459 (43%)

Query:     3 WRQSTDCCDWSGVDCDE-AGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNG 61
             W ++TDCC W GV CD+ +G VI LDL +  ++  ++  +SLF L YLR L+L+  + +G
Sbjct:    57 WNKTTDCCSWDGVTCDDKSGQVISLDLRSTLLNSSLKTNSSLFRLQYLRHLDLSGCNLHG 116

Query:    62 TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
              +IPS L N+S L  L LS     G IP  I ++ +L  L    N   G I S    +L 
Sbjct:   117 -EIPSSLGNLSRLENLELSSNRLVGEIPYSIGNLKQLRNLSLGDNDLIGEIPS-SLGNLS 174

Query:   122 NLVYAVLSDNSLNGSIPRS---MFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXX 178
              L+   L +NSL G +P S   + E  +                  L       +F    
Sbjct:   175 LLLDLDLWNNSLVGEVPASIGNLNELRVMSLDRNSLSGSIPISFTNLTKLSEFRIF-FNN 233

Query:   179 XXXXXXXXXXXHGTVQLDKILNL--GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS 236
                        H  V  D   N   G+  K   S  SLA     RN  FS  +E  N++S
Sbjct:   234 FTSLPSDLSGFHNLVTFDISANSFSGHFPKFLFSIPSLAWVSMDRN-QFSGPIEFANISS 292

Query:   237 C-KLREIPNLKN-------QSQLQYLYL-----SENQISREIPNWIWRVSVVGLHCLNLS 283
               KL+ +   +N       +S  ++L L     + N IS  +P  + ++  V L     S
Sbjct:   293 SSKLQNLILTRNKLDGSIPESISKFLNLVLLDVAHNNISGPVPRSMSKL--VSLRIFGFS 350

Query:   284 HNLLVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSIPADTGNF 341
             +N L G + P  +  L    LS +       I+     +  +D S N+F  + P      
Sbjct:   351 NNKLEG-EVPSWLWRLSSTMLSHNSFSSFEKIYSKETMIQVLDLSFNSFRGTFPVWICK- 408

Query:   342 MPRLRYFCAANNGLTGIIPASLCNATTXXXXXXXXXXFMKKSDAFLNCL-LQTLDLNGNR 400
             +  L +   +NN   G IP  L N                  D F N   LQ+LD++GN+
Sbjct:   409 LKGLHFLDLSNNLFNGSIPLCLRNFNLTGLILGNNKFSGTLPDIFANNTNLQSLDVSGNQ 468

Query:   401 LQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439
             L+G  PKS+ NCK L  +N+ +N+  D FP WL   PSL
Sbjct:   469 LEGKFPKSLINCKGLHFVNVESNKIKDTFPSWLGSLPSL 507

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001339001 SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (1074 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	440
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  159 bits (403), Expect = 4e-42
 Identities = 144/432 (33%), Positives = 208/432 (48%), Gaps = 65/432 (15%)

Query: 3   WRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGT 62
           W  S D C W G+ C+ +  V+ +DLS ++ISG I  ++++F L Y++++NL+    +G 
Sbjct: 51  WNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSG- 107

Query: 63  QIPSKLANIS-SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
            IP  +   S SL YLNLS+  F G IP    S+  L  LD S N  SG I +       
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFS 164

Query: 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181
           +L    L  N L G IP S+         + ++L+ L L+ N+L G IP  + ++K L  
Sbjct: 165 SLKVLDLGGNVLVGKIPNSL--------TNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216

Query: 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE 241
           + L  NNL G +  + I  L +L  LDL YN+L                           
Sbjct: 217 IYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT------------------------GP 251

Query: 242 IP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALR 300
           IP +L N   LQYL+L +N++S  IP  I+  S+  L  L+LS N L G      IP L 
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSG-----EIPEL- 303

Query: 301 FIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360
                       + QL N  I   FS NNFT  IP    + +PRL+     +N  +G IP
Sbjct: 304 ------------VIQLQNLEILHLFS-NNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIP 349

Query: 361 ASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVL 418
            +L     L++LDLS N+   +    L  +  L  L L  N L+G +PKS+  C+ L  +
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409

Query: 419 NLGNNQFSDKFP 430
            L +N FS + P
Sbjct: 410 RLQDNSFSGELP 421

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  134 bits (340), Expect = 6e-34
 Identities = 146/431 (33%), Positives = 202/431 (46%), Gaps = 43/431 (9%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LDLS   +SG I N    FS   L+ L+L      G +IP+ L N++SL +L L+     
Sbjct: 145 LDLSNNMLSGEIPNDIGSFS--SLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLV 201

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISS-----IRWEHLLNLVYAVLSDNSLNGSIPRS 140
           G IP ++  M  L  +   +N  SG I           HL +LVY     N+L G IP S
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL-DLVY-----NNLTGPIPSS 255

Query: 141 MFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILN 200
           +         +   L  L L  N+L G IP S+F L+KL SL LS N+L G +  + ++ 
Sbjct: 256 L--------GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQ 306

Query: 201 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIP-NLKNQSQLQYLYLSE 258
           L NL  L L  N+    +     +  P L++L L S K   EIP NL   + L  L LS 
Sbjct: 307 LQNLEILHLFSNNFT-GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA---LRFIDLSSHQLRGNIHQ 315
           N ++ EIP  +   S   L  L L  N L G + P S+ A   LR + L  +   G +  
Sbjct: 366 NNLTGEIPEGL--CSSGNLFKLILFSNSLEG-EIPKSLGACRSLRRVRLQDNSFSGELPS 422

Query: 316 ----LPNNLIY-IDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLS 370
               LP  L+Y +D SNNN    I +   + MP L+    A N   G +P S   +  L 
Sbjct: 423 EFTKLP--LVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSF-GSKRLE 478

Query: 371 LLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK 428
            LDLS N F       L  L  L  L L+ N+L G +P  +++CK L  L+L +NQ S +
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538

Query: 429 FPCWLYDAPSL 439
            P    + P L
Sbjct: 539 IPASFSEMPVL 549

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  127 bits (321), Expect = 2e-31
 Identities = 120/410 (29%), Positives = 189/410 (46%), Gaps = 47/410 (11%)

Query: 28  LSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGH 87
           L   ++SG I     +  L  L  L+L   +  G  IPS L N+ +L YL L     +G 
Sbjct: 219 LGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 88  IPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIF 147
           IP  I S+ +L++LD S N  SG I  +  + L NL    L  N+  G IP ++   P  
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLP-- 332

Query: 148 SNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207
                  L  L L  N+  G IP ++ +   LT L LS+NNL G +  + + + GNL KL
Sbjct: 333 ------RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP-EGLCSSGNLFKL 385

Query: 208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP-NLKNQSQLQYLYLSENQISREIP 266
            L  NSL                          EIP +L     L+ + L +N  S E+P
Sbjct: 386 ILFSNSLE------------------------GEIPKSLGACRSLRRVRLQDNSFSGELP 421

Query: 267 NWIWRVSVVGLHCLNLSHNLLVGF--QGPYSIPALRFIDLSSHQLRGNIHQL--PNNLIY 322
           +   ++ +V  + L++S+N L G      + +P+L+ + L+ ++  G +        L  
Sbjct: 422 SEFTKLPLV--YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN 479

Query: 323 IDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK 382
           +D S N F+ ++P   G+    L     + N L+G IP  L +   L  LDLS+N    +
Sbjct: 480 LDLSRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538

Query: 383 SDAFLN--CLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
             A  +   +L  LDL+ N+L G +PK++ N + L  +N+ +N      P
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.7 bits (181), Expect = 6e-14
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 37/168 (22%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L L+     GG+ +    F    L +L+L+R  F+G  +P KL ++S L  L LS+   +
Sbjct: 457 LSLARNKFFGGLPD---SFGSKRLENLDLSRNQFSGA-VPRKLGSLSELMQLKLSENKLS 512

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
           G IP ++SS  +LV+LD                          S N L+G IP S  E P
Sbjct: 513 GEIPDELSSCKKLVSLDL-------------------------SHNQLSGQIPASFSEMP 547

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTV 193
           + S         LDLS N+L G IP ++  ++ L  + +S N+LHG++
Sbjct: 548 VLSQ--------LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 13/202 (6%)

Query: 247 NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI----PALRFI 302
           N S++  + LS   IS +I + I+R+    +  +NLS+N L G   P  I     +LR++
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPY--IQTINLSNNQLSG-PIPDDIFTTSSSLRYL 123

Query: 303 DLSSHQLRGNIHQ--LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360
           +LS++   G+I +  +PN L  +D SNN  +  IP D G+F   L+      N L G IP
Sbjct: 124 NLSNNNFTGSIPRGSIPN-LETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIP 181

Query: 361 ASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVL 418
            SL N T+L  L L++N  + +    L  +  L+ + L  N L G +P  I     L  L
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Query: 419 NLGNNQFSDKFPCWLYDAPSLH 440
           +L  N  +   P  L +  +L 
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQ 263

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 33/140 (23%)

Query: 12  WSGVDC---DEAGH--VIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPS 66
           WSG DC      G   + GL L  + + G                            IP+
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRG---------------------------FIPN 436

Query: 67  KLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA 126
            ++ +  L  +NLS     G+IP  + S+  L  LD S+N F+GSI     + L +L   
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRIL 495

Query: 127 VLSDNSLNGSIPRSMFEFPI 146
            L+ NSL+G +P ++    +
Sbjct: 496 NLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 33/117 (28%)

Query: 77  LNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGS 136
           L L + G  G IP  IS +  L +++                         LS NS+ G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSIN-------------------------LSGNSIRGN 457

Query: 137 IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTV 193
           IP S+         S ++L+ LDLS N   GSIP S+ +L  L  L L+ N+L G V
Sbjct: 458 IPPSL--------GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 339 GNFMPRLRYFCAAN---NGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQT 393
            N + +LR+  + N   N + G IP SL + T+L +LDLS NSF       L  L  L+ 
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494

Query: 394 LDLNGNRLQGTVPKSI 409
           L+LNGN L G VP ++
Sbjct: 495 LNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 352 NNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSI 409
           N GL G IP  +     L  ++LS NS        L  +  L+ LDL+ N   G++P+S+
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 410 ANCKMLEVLNLGNNQFSDKFP 430
                L +LNL  N  S + P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 148 SNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207
           S      +D L L    LRG IP  + +L+ L S+ LS N++ G +    + ++ +L  L
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVL 471

Query: 208 DLSYNSL 214
           DLSYNS 
Sbjct: 472 DLSYNSF 478

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 75/239 (31%), Positives = 113/239 (47%), Gaps = 21/239 (8%)

Query: 29  STESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHI 88
           S  S   G EN  +L  L  L  LNL R   N     S+L  +++LT L+L +       
Sbjct: 78  SGISSLDGSENLLNLLPLPSLD-LNLNRLRSN----ISELLELTNLTSLDLDNNNITDIP 132

Query: 89  PLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS 148
           PL     + L  LD S N+     S +R  +L NL    LS N L+  +P+ +       
Sbjct: 133 PLIGLLKSNLKELDLSDNKIESLPSPLR--NLPNLKNLDLSFNDLS-DLPKLLSN----- 184

Query: 149 NASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLD 208
               S L+ LDLSGN++   +P  +  L  L  L LS+N++     L  + NL NL+ L+
Sbjct: 185 ---LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLE 238

Query: 209 LSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPN 267
           LS N L     S     +  LE L+L++ ++  I +L + + L+ L LS N +S  +P 
Sbjct: 239 LSNNKLEDLPESIGNLSN--LETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L LS   +SG I +  S  S   L SL+L+    +G QIP+  + +  L+ L+LS    +
Sbjct: 504 LKLSENKLSGEIPDELS--SCKKLVSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQLS 560

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISS 114
           G IP  + ++  LV ++ S N   GS+ S
Sbjct: 561 GEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 52/239 (21%), Positives = 76/239 (31%), Gaps = 47/239 (19%)

Query: 207 LDLSYNSLAVDE---SSRNYSFSPMLELLNLASCKLREIP--------NLKNQSQLQYLY 255
           L L  N+L  +     +      P L+ L L+  +   IP         L     LQ L 
Sbjct: 28  LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD 87

Query: 256 LSENQISREIPN-WIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH 314
           LS+N +  +        +    L  L L++N L           L+              
Sbjct: 88  LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-----DLPPALEKL 142

Query: 315 QLPNNLIYIDFSNNNFTSSIP-ADTGNFMPRLRYFCAANNGLTGIIPASLCNA----TTL 369
            L  N +          S    A        L+    ANNG+      +L         L
Sbjct: 143 VLGRNRLEGA-------SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195

Query: 370 SLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK 428
            +LDL+NN    +  + L   L +L                  K LEVLNLG+N  +D 
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASL------------------KSLEVLNLGDNNLTDA 236

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 17/255 (6%)

Query: 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM-LELLNL 234
           L  L SL L+ N L     + ++L L NL  LDL  N+  + +           L+ L+L
Sbjct: 92  LLPLPSLDLNLNRL--RSNISELLELTNLTSLDLDNNN--ITDIPPLIGLLKSNLKELDL 147

Query: 235 ASCKLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP 293
           +  K+  +P  L+N   L+ L LS N +S          ++  L+ L+LS N +      
Sbjct: 148 SDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL---LSNLSNLNNLDLSGNKISDLPPE 204

Query: 294 YSIP-ALRFIDLSSHQLRGNIHQLPN--NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCA 350
             +  AL  +DLS++ +   +  L N  NL  ++ SNN       +     +  L     
Sbjct: 205 IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDL 262

Query: 351 ANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIA 410
           +NN ++    +SL + T L  LDLS NS           LL    L    L     + + 
Sbjct: 263 SNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE-LK 319

Query: 411 NCKMLEVLNLGNNQF 425
              +L   N+ +N  
Sbjct: 320 LNSILLNNNILSNGE 334

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 155 LDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNS 213
           L +LDLS NRL   IP   F+ L  L  L LS NNL  ++  +    L +L  LDLS N+
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 214 L 214
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 262
             LE L+L++ ++ ++P L N   L+ L LS N+I+
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
PLN03150	623	hypothetical protein; Provisional	99.34
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.91
PLN03150	623	hypothetical protein; Provisional	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.55
KOG4341	483	consensus F-box protein containing LRR [General fu	98.55
KOG4341	483	consensus F-box protein containing LRR [General fu	98.51
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.35
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
PRK15386	426	type III secretion protein GogB; Provisional	98.24
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.96
PRK15386	426	type III secretion protein GogB; Provisional	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.43
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.8
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.43
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.08
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	94.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.64
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.28
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.01
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.2
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.12
KOG4308	478	consensus LRR-containing protein [Function unknown	91.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.2
smart00370	26	LRR Leucine-rich repeats, outliers.	91.2
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.35
KOG4308	478	consensus LRR-containing protein [Function unknown	81.55
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.29

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.1e-45  Score=382.51  Aligned_cols=425  Identities=32%  Similarity=0.490  Sum_probs=229.0

Q ss_pred             CCCCCCCCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEc
Q 045270            1 MQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNL   79 (440)
Q Consensus         1 ~~w~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l   79 (440)
                      ++|+...++|.|.||+|+..++|+.|+++++.+.+..+.  .+..+++|+.|++++|.+... +|..+. .+++|++|++
T Consensus        49 ~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~L  125 (968)
T PLN00113         49 SNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNL  125 (968)
T ss_pred             CCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEEC
Confidence            369888999999999999878999999999998887765  788888999999888887654 555443 5666666666


Q ss_pred             ccCcccc----------------------CCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCC
Q 045270           80 SDAGFAG----------------------HIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSI  137 (440)
Q Consensus        80 ~~~~~~~----------------------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  137 (440)
                      ++|.+.+                      .+|..+.++++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.+
T Consensus       126 s~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~  204 (968)
T PLN00113        126 SNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQI  204 (968)
T ss_pred             cCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcC
Confidence            6655543                      4444455555555555555555433333 3455555555555555555555


Q ss_pred             CccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCccccc
Q 045270          138 PRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVD  217 (440)
Q Consensus       138 ~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  217 (440)
                      |..+..+        ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+...
T Consensus       205 p~~l~~l--------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        205 PRELGQM--------KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             ChHHcCc--------CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeecc
Confidence            5554443        456666666666555555556666666666666665543322 3455555555555555555433


Q ss_pred             CCccccCCccccceeecCCCCCC-CCCC-CcccCcccEEeccCcccccccCccccccc----------------------
Q 045270          218 ESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVS----------------------  273 (440)
Q Consensus       218 ~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------------------  273 (440)
                      .+.. +..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+.+..|..+....                      
T Consensus       276 ~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        276 IPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             Cchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence            2222 334444555555555443 2222 34444444444444444443333332211                      


Q ss_pred             ccceeEEEccCcccccccCC--ccCCceeEEEcCCccccCcccC---CCCCccEEEccCCcccccCCccccccCCCcceE
Q 045270          274 VVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYF  348 (440)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L  348 (440)
                      .++|+.|++++|.+....+.  ..+++++.+++.+|.+.+..+.   .+++|+.|++++|.+.+.+|..+.. ++.|+.|
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L  433 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFL  433 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc-CCCCCEE
Confidence            12244444444433221111  1122333333333333222211   1234445555555444444433332 4444444


Q ss_pred             ecccccccccchhhhhccC-----------------------CCCEEEcCCCcCCCC-Cchhh-hccccEEECCCCcccC
Q 045270          349 CAANNGLTGIIPASLCNAT-----------------------TLSLLDLSNNSFMKK-SDAFL-NCLLQTLDLNGNRLQG  403 (440)
Q Consensus       349 ~l~~~~l~~~~~~~~~~~~-----------------------~L~~L~l~~n~i~~~-~~~~~-~~~L~~L~l~~n~~~~  403 (440)
                      ++++|.+.+..+..+..++                       +|+.|++++|.+... +..+. ..+|+.|++++|.+.+
T Consensus       434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG  513 (968)
T ss_pred             ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence            4444444444443333344                       444444444444433 22211 2346666666666666


Q ss_pred             CchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270          404 TVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       404 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  440 (440)
                      ..|+.+.++++|+.|++++|.+++.+|..+.++++|+
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  550 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS  550 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence            6666666666677777777776666666666666553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-41  Score=352.94  Aligned_cols=403  Identities=32%  Similarity=0.470  Sum_probs=226.8

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .++++|++++|.+.+..|.  .++.+++|++|++++|.+... +|..++++++|++|++++|.+.+.+|..+.++++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPN--DIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             CCCCEEECcCCcccccCCh--HHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            3455555555555555554  566667777777766666544 6666666777777777777666666666677777777


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      |++++|.+.+.++. .+..+++|++|++++|.+.+.+|..+..+        ++|++|++++|.+.+..|..+..+++|+
T Consensus       217 L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--------~~L~~L~L~~n~l~~~~p~~l~~l~~L~  287 (968)
T PLN00113        217 IYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLGNL--------KNLQYLFLYQNKLSGPIPPSIFSLQKLI  287 (968)
T ss_pred             EECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccChhHhCC--------CCCCEEECcCCeeeccCchhHhhccCcC
Confidence            77777766654444 36666777777777776666666666544        5666666666666655666666666666


Q ss_pred             EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC-CcccCcccEEeccC
Q 045270          181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSE  258 (440)
Q Consensus       181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~L~~L~l~~  258 (440)
                      +|++++|.+.+..+ ..+..+++|+.|++++|.+....+.. +..+++|+.|++.+|.+. .+|. +..+++|+.|++++
T Consensus       288 ~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        288 SLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             EEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence            66666666653332 34556666666666666655443332 445555666666666554 3333 44555555555555


Q ss_pred             cccccccCcccccc----------------------cccceeEEEccCcccccccCC--ccCCceeEEEcCCccccCccc
Q 045270          259 NQISREIPNWIWRV----------------------SVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIH  314 (440)
Q Consensus       259 ~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~  314 (440)
                      |.+.+..|..+...                      ..++|+.|++++|.+....+.  ..++.|+.+++++|.+.+..+
T Consensus       366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~  445 (968)
T PLN00113        366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN  445 (968)
T ss_pred             CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence            55544444333211                      122355555555544332221  234555555555555443332


Q ss_pred             C---CCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-Cchhh-hc
Q 045270          315 Q---LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAFL-NC  389 (440)
Q Consensus       315 ~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~-~~  389 (440)
                      .   .+++|+.|++++|.+.+.+|..+.  .++|+.|++++|.+.+..|..+..+++|+.|++++|.+... |..+. ..
T Consensus       446 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  523 (968)
T PLN00113        446 SRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK  523 (968)
T ss_pred             hhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence            2   234555555555555544443321  34555566666655555555555566666666666655543 32222 23


Q ss_pred             cccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCC
Q 045270          390 LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL  439 (440)
Q Consensus       390 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  439 (440)
                      +|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+.++++|
T Consensus       524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  573 (968)
T PLN00113        524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL  573 (968)
T ss_pred             CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence            46666666666665555556666666666666666665566555555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=273.51  Aligned_cols=382  Identities=21%  Similarity=0.239  Sum_probs=279.0

Q ss_pred             ceEEEeeccceeecccCCCcccc--ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCc
Q 045270           22 HVIGLDLSTESISGGIENAASLF--SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV   99 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   99 (440)
                      +.+-+|.+...+....-.  .+.  -.+.-+.|++++|++... -+..|.++++|+++++..|.++ .+|.......+|+
T Consensus        53 ~~~lldcs~~~lea~~~~--~l~g~lp~~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~  128 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKS--RLKGFLPSQTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE  128 (873)
T ss_pred             CceeeecCcccccccccc--ccCCcCccceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hccccccccccee
Confidence            456677777765421111  111  223556689999888776 5667888999999999988887 7887777777799


Q ss_pred             eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270          100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL  179 (440)
Q Consensus       100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  179 (440)
                      .|+|.+|.+. .+....+..++.|+.|+|+.|.++ .+|..-+.       .-.++++|++++|.+...-...|..+.+|
T Consensus       129 ~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is-~i~~~sfp-------~~~ni~~L~La~N~It~l~~~~F~~lnsL  199 (873)
T KOG4194|consen  129 KLDLRHNLIS-SVTSEELSALPALRSLDLSRNLIS-EIPKPSFP-------AKVNIKKLNLASNRITTLETGHFDSLNSL  199 (873)
T ss_pred             EEeeeccccc-cccHHHHHhHhhhhhhhhhhchhh-cccCCCCC-------CCCCceEEeeccccccccccccccccchh
Confidence            9999999888 666667888899999999999887 55554432       22689999999999986666778888899


Q ss_pred             cEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEecc
Q 045270          180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLS  257 (440)
Q Consensus       180 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~  257 (440)
                      ..|.+++|+++ ..+...|+.+++|+.|++..|.+....... |..+++|+.|.+..|.+..+..  |..+.++++|++.
T Consensus       200 ~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  200 LTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE  277 (873)
T ss_pred             eeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence            99999999998 888888999999999999999886544444 7788999999999999998877  8889999999999


Q ss_pred             CcccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccCcccCC---CCCccEEEccCCcccc
Q 045270          258 ENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQL---PNNLIYIDFSNNNFTS  332 (440)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~L~~~~~~~  332 (440)
                      .|.+...-..++++...  |+.|++++|.|..+...  ..+++|++|+++.|++.......   +..|++|.|+.|.+. 
T Consensus       278 ~N~l~~vn~g~lfgLt~--L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-  354 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTS--LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-  354 (873)
T ss_pred             cchhhhhhcccccccch--hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-
Confidence            99888777777776665  88888888888776554  34677777777777665443332   456677777777665 


Q ss_pred             cCCccccccCCCcceEecccccccc---cchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchh
Q 045270          333 SIPADTGNFMPRLRYFCAANNGLTG---IIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPK  407 (440)
Q Consensus       333 ~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~  407 (440)
                      .+....+.++.+|+.|+++.|.+..   .....|.+++.|+.|++.+|+++.++...+  ...|+.|||.+|.+....|.
T Consensus       355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n  434 (873)
T KOG4194|consen  355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN  434 (873)
T ss_pred             HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence            5555555556777777777776542   234456666777777777777766654333  34577777777777766666


Q ss_pred             hhhcCCCCcEEECCC
Q 045270          408 SIANCKMLEVLNLGN  422 (440)
Q Consensus       408 ~~~~l~~L~~L~l~~  422 (440)
                      +|..+ +|++|-+..
T Consensus       435 AFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  435 AFEPM-ELKELVMNS  448 (873)
T ss_pred             ccccc-hhhhhhhcc
Confidence            67666 666666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-35  Score=264.97  Aligned_cols=362  Identities=25%  Similarity=0.242  Sum_probs=303.6

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL  101 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  101 (440)
                      .++.||+++|.+....+.  .|.++++|+++++..|.+..  +|...+...+|+.|+|.+|.|.+.-..++..++.||.|
T Consensus        79 ~t~~LdlsnNkl~~id~~--~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl  154 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFE--FFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL  154 (873)
T ss_pred             ceeeeeccccccccCcHH--HHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence            578899999999876655  89999999999999888854  78777778889999999999998888899999999999


Q ss_pred             cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccE
Q 045270          102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS  181 (440)
Q Consensus       102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  181 (440)
                      ||+.|.++ .++...+..-.++++|+|+.|.|+......+.        .+.+|.+|.++.|+++...+..|.++++|+.
T Consensus       155 DLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~--------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  155 DLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFD--------SLNSLLTLKLSRNRITTLPQRSFKRLPKLES  225 (873)
T ss_pred             hhhhchhh-cccCCCCCCCCCceEEeecccccccccccccc--------ccchheeeecccCcccccCHHHhhhcchhhh
Confidence            99999998 66555678888999999999999855555553        3468999999999999555566777999999


Q ss_pred             EeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCc
Q 045270          182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSEN  259 (440)
Q Consensus       182 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~  259 (440)
                      |++..|++. .+..-+|.++++|+.|.+..|.+....... |..+..+++|++..|+++.+..  +.+++.|+.|++++|
T Consensus       226 LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~-Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  226 LDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGA-FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             hhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcc-eeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            999999997 555667999999999999999998777766 6678899999999999998765  889999999999999


Q ss_pred             ccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccC---cccCCCCCccEEEccCCcccccC
Q 045270          260 QISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRG---NIHQLPNNLIYIDFSNNNFTSSI  334 (440)
Q Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~  334 (440)
                      .|...-++.-.  -..+|+.|++++|.++.+.+.  ..+..|++|.++.|++.-   ..+....+|++|+|+.|.+...+
T Consensus       304 aI~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  304 AIQRIHIDSWS--FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             hhheeecchhh--hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            98765444332  234699999999999998876  348899999999998763   33444679999999999886444


Q ss_pred             C--ccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-CchhhhccccEEECCCCc
Q 045270          335 P--ADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAFLNCLLQTLDLNGNR  400 (440)
Q Consensus       335 ~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~L~~L~l~~n~  400 (440)
                      -  ...+..++.|+.|.+.+|++..+....|.++++|++|++.+|.|.++ +.++..-.|++|.++.-.
T Consensus       382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSss  450 (873)
T KOG4194|consen  382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSS  450 (873)
T ss_pred             ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccc
Confidence            3  33456699999999999999988899999999999999999999998 666666679999886543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=7.6e-34  Score=244.41  Aligned_cols=380  Identities=23%  Similarity=0.342  Sum_probs=249.1

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCC---------------------CccccchhcCCCCcEEEcc
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNG---------------------TQIPSKLANISSLTYLNLS   80 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------------~~l~~~~~~l~~L~~L~l~   80 (440)
                      -++++++.+|...+ .|+  +++.+..+..++.+++++..                     ..+++.++.+-.|+.++..
T Consensus        69 ~l~vl~~~~n~l~~-lp~--aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   69 CLTVLNVHDNKLSQ-LPA--AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             ceeEEEeccchhhh-CCH--HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence            46677777776654 222  34444444444444444421                     1144455555555555555


Q ss_pred             cCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEc
Q 045270           81 DAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDL  160 (440)
Q Consensus        81 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l  160 (440)
                      +|++. ..|.++.++.+|..+++.+|.++. .++..+. ++.|++++...|.+. .+|..++.+        .+|+.|++
T Consensus       146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l--------~~L~~LyL  213 (565)
T KOG0472|consen  146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIA-MKRLKHLDCNSNLLE-TLPPELGGL--------ESLELLYL  213 (565)
T ss_pred             ccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHH-HHHHHhcccchhhhh-cCChhhcch--------hhhHHHHh
Confidence            55555 555566666666666666666663 3332333 777777777777776 777777655        57777888


Q ss_pred             CCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC
Q 045270          161 SGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR  240 (440)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  240 (440)
                      ..|++. .+| .|.++..|+++.++.|.+. ..+....+++.++..|++..|++...+..  ...+.+|++|++++|.++
T Consensus       214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde--~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH--HHHhhhhhhhcccCCccc
Confidence            888887 666 6778888888888888776 67777777888888888888888765544  445677888888888888


Q ss_pred             CCCC-CcccCcccEEeccCcccccc-------------------------------------cCccc--ccccccceeEE
Q 045270          241 EIPN-LKNQSQLQYLYLSENQISRE-------------------------------------IPNWI--WRVSVVGLHCL  280 (440)
Q Consensus       241 ~l~~-~~~~~~L~~L~l~~~~~~~~-------------------------------------~~~~~--~~~~~~~L~~L  280 (440)
                      .+|. ++++ +|+.|-+.||.+...                                     .+.+.  ......+.+.|
T Consensus       289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL  367 (565)
T KOG0472|consen  289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL  367 (565)
T ss_pred             cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence            8877 7777 888888888766310                                     00000  00111233444


Q ss_pred             EccCcccccccCC-cc---CCceeEEEcCCccccCcccC--------------------------CCCCccEEEccCCcc
Q 045270          281 NLSHNLLVGFQGP-YS---IPALRFIDLSSHQLRGNIHQ--------------------------LPNNLIYIDFSNNNF  330 (440)
Q Consensus       281 ~l~~~~~~~~~~~-~~---~~~L~~L~l~~~~~~~~~~~--------------------------~~~~L~~L~L~~~~~  330 (440)
                      +++.-.++.++.. +.   -.-...+++++|++.+....                          .+++|..|+|++|.+
T Consensus       368 ~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L  447 (565)
T KOG0472|consen  368 DVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLL  447 (565)
T ss_pred             cccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchh
Confidence            4544444444332 11   22356677777776542211                          145777888887777


Q ss_pred             cccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCch-hh-hccccEEECCCCcccCCchhh
Q 045270          331 TSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDA-FL-NCLLQTLDLNGNRLQGTVPKS  408 (440)
Q Consensus       331 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~-~~~L~~L~l~~n~~~~~~~~~  408 (440)
                      . .+|.+++. +-.|+.|+++.|+|. ..|+++..+..++.+-.++|++..++.. .. ..+|.+||+.+|.+. .+|..
T Consensus       448 n-~LP~e~~~-lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~  523 (565)
T KOG0472|consen  448 N-DLPEEMGS-LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI  523 (565)
T ss_pred             h-hcchhhhh-hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence            6 77777776 666888888888777 5777777777777777777888877544 22 456999999999998 66777


Q ss_pred             hhcCCCCcEEECCCCccc
Q 045270          409 IANCKMLEVLNLGNNQFS  426 (440)
Q Consensus       409 ~~~l~~L~~L~l~~n~~~  426 (440)
                      +++|++|++|++.||+|.
T Consensus       524 LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  524 LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hccccceeEEEecCCccC
Confidence            999999999999999996

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=4.9e-33  Score=239.45  Aligned_cols=391  Identities=28%  Similarity=0.382  Sum_probs=254.4

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL  101 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  101 (440)
                      .+..+++++|.+....+   .+.++..|.+|+++.++...  +|.+++.+..++.++.++|.+. .+|..+..++.|+++
T Consensus        46 ~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL  119 (565)
T ss_pred             chhhhhhccCchhhccH---hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence            34789999999876444   58899999999999999854  7999999999999999999998 899999999999999


Q ss_pred             cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccE
Q 045270          102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS  181 (440)
Q Consensus       102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  181 (440)
                      ++++|.+...++  .++.+..++.++..+|+++ ..|+.++.+        .++..+++.+|.+. ..|.....++.|++
T Consensus       120 ~~s~n~~~el~~--~i~~~~~l~dl~~~~N~i~-slp~~~~~~--------~~l~~l~~~~n~l~-~l~~~~i~m~~L~~  187 (565)
T KOG0472|consen  120 DCSSNELKELPD--SIGRLLDLEDLDATNNQIS-SLPEDMVNL--------SKLSKLDLEGNKLK-ALPENHIAMKRLKH  187 (565)
T ss_pred             hccccceeecCc--hHHHHhhhhhhhccccccc-cCchHHHHH--------HHHHHhhccccchh-hCCHHHHHHHHHHh
Confidence            999999884444  3788889999999999998 888888765        45555555555555 33333333555555


Q ss_pred             EeccccccccccchhhHhcCCCCcEEEcCCCccc----------------------ccCCccccCCccccceeecCCCCC
Q 045270          182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLA----------------------VDESSRNYSFSPMLELLNLASCKL  239 (440)
Q Consensus       182 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------~~~~~~~~~~~~~L~~L~l~~~~l  239 (440)
                      |+...|.+. .+++ .++.+.+|+.|++..|++.                      ..+... ...++++..|++.+|++
T Consensus       188 ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~-~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  188 LDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEH-LKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             cccchhhhh-cCCh-hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHH-hcccccceeeecccccc
Confidence            555555443 3332 2444555555555555443                      333222 33444455555555555


Q ss_pred             CCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCccccccc---------------------------
Q 045270          240 REIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ---------------------------  291 (440)
Q Consensus       240 ~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------------------------  291 (440)
                      +++|. +..+++|+.||+++|.++ ..|......   +|+.|.+.+|.+.++.                           
T Consensus       265 ke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s  340 (565)
T KOG0472|consen  265 KEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS  340 (565)
T ss_pred             ccCchHHHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence            55554 444445555555555444 233333221   3444444444331100                           


Q ss_pred             ----------------CCccCCceeEEEcCCccccCcccCCCC-----CccEEEccCCccc-------------------
Q 045270          292 ----------------GPYSIPALRFIDLSSHQLRGNIHQLPN-----NLIYIDFSNNNFT-------------------  331 (440)
Q Consensus       292 ----------------~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~L~~L~L~~~~~~-------------------  331 (440)
                                      ....+-+.+.|++++-+++....+.+.     -+..+++++|.+.                   
T Consensus       341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls  420 (565)
T KOG0472|consen  341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS  420 (565)
T ss_pred             cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence                            000012223333333333322211111     1445555555433                   


Q ss_pred             ----ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhh-ccccEEECCCCcccCCch
Q 045270          332 ----SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLN-CLLQTLDLNGNRLQGTVP  406 (440)
Q Consensus       332 ----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~~L~~L~l~~n~~~~~~~  406 (440)
                          +.+|..+.+ +++|+.|++++|-+. ..|..++.+-.|+.|+++.|.+...|.+... ..++.+-.++|++....+
T Consensus       421 nn~isfv~~~l~~-l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  421 NNKISFVPLELSQ-LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             cCccccchHHHHh-hhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh
Confidence                133333334 788889999988887 5788888888899999999988888877764 447777778888887777


Q ss_pred             hhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270          407 KSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       407 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  440 (440)
                      ..+.+|.+|..||+.+|.+ ..+|..+++|.+|+
T Consensus       499 ~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~  531 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLR  531 (565)
T ss_pred             HHhhhhhhcceeccCCCch-hhCChhhcccccee
Confidence            7799999999999999998 46788899999885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.6e-31  Score=242.51  Aligned_cols=378  Identities=27%  Similarity=0.349  Sum_probs=285.3

Q ss_pred             CceEEEeeccceeecc-cCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCc
Q 045270           21 GHVIGLDLSTESISGG-IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV   99 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   99 (440)
                      +-||.+|+++|+++|. .|.  ....++.++.|.+....+  ..+|+.++.+.+|++|.+.+|++. .+-..++.++.||
T Consensus         7 pFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             ceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            4578899999999854 444  788889999999876666  447999999999999999999988 5666788999999


Q ss_pred             eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccc-cccccccC
Q 045270          100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIP-VSVFELKK  178 (440)
Q Consensus       100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~  178 (440)
                      .+.+..|.++....+..+-++..|..|+|++|++. +.|..+...        +++.+|++++|.|. ++| ..|.+++.
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A--------Kn~iVLNLS~N~Ie-tIPn~lfinLtD  151 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA--------KNSIVLNLSYNNIE-TIPNSLFINLTD  151 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh--------cCcEEEEcccCccc-cCCchHHHhhHh
Confidence            99999998876665556888899999999999998 888887654        68889999999998 455 45567888


Q ss_pred             ccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCC--CCCCC-CcccCcccEEe
Q 045270          179 LTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL--REIPN-LKNQSQLQYLY  255 (440)
Q Consensus       179 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l--~~l~~-~~~~~~L~~L~  255 (440)
                      |-.|++++|++. ..++ ..+.+..|++|.+++|.+....... +..+++|+.|++++++-  ..+|. +..+.+|..+|
T Consensus       152 LLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD  228 (1255)
T KOG0444|consen  152 LLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD  228 (1255)
T ss_pred             Hhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence            889999999886 5554 4678889999999999876554444 55677788888888854  36666 88888999999


Q ss_pred             ccCcccccccCcccccccccceeEEEccCcccccccCC-ccCCceeEEEcCCccccCcccCC--CCCccEEEccCCccc-
Q 045270          256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNIHQL--PNNLIYIDFSNNNFT-  331 (440)
Q Consensus       256 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~L~~~~~~-  331 (440)
                      ++.|.+. .+|+.+..  .++|++|++++|.++.+... ....++++|+++.|++.......  ++.|+.|.+.+|+++ 
T Consensus       229 lS~N~Lp-~vPecly~--l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  229 LSENNLP-IVPECLYK--LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             ccccCCC-cchHHHhh--hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc
Confidence            9988875 46666644  34588999999988887655 44678888888888877654443  467777777777764 


Q ss_pred             ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hccccEEECCCCcccCCchhhhh
Q 045270          332 SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNGNRLQGTVPKSIA  410 (440)
Q Consensus       332 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~  410 (440)
                      .-+|..+++ +.+|+.+...+|.+. .+|++++.|..|+.|.++.|.+.+.|.+.. .+-|+.||+..|+-....|.--.
T Consensus       306 eGiPSGIGK-L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d  383 (1255)
T KOG0444|consen  306 EGIPSGIGK-LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPND  383 (1255)
T ss_pred             cCCccchhh-hhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence            236666766 778888888888777 778888888888888888888888776655 45588888887765544442211


Q ss_pred             cCCCCcEEECC
Q 045270          411 NCKMLEVLNLG  421 (440)
Q Consensus       411 ~l~~L~~L~l~  421 (440)
                      .-++|+.-++.
T Consensus       384 a~~~lefYNID  394 (1255)
T KOG0444|consen  384 ARKKLEFYNID  394 (1255)
T ss_pred             hhhcceeeecc
Confidence            22455555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2e-31  Score=242.04  Aligned_cols=369  Identities=28%  Similarity=0.400  Sum_probs=315.1

Q ss_pred             ccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhccccc
Q 045270           43 LFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLN  122 (440)
Q Consensus        43 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~  122 (440)
                      .+-++..|-+|+++|.+.+...|..+..+.+++.|.|..+.+. .+|..++.+.+|++|.++.|++. .+.. .+..++.
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~   79 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPR   79 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchh
Confidence            4567888999999999998779999999999999999999988 89999999999999999999987 3332 4888999


Q ss_pred             ceEEEecCCccC-CCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270          123 LVYAVLSDNSLN-GSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL  201 (440)
Q Consensus       123 L~~L~l~~~~~~-~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  201 (440)
                      |+.+.+.+|++. ..+|..++.+        ..|.+|+++.|++. ..|..+...+++-.|++++|++. .++...|-++
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l--------~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL  149 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRL--------KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL  149 (1255)
T ss_pred             hHHHhhhccccccCCCCchhccc--------ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence            999999999874 3688888877        68999999999998 89999989999999999999997 8888889999


Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC--CCcccCcccEEeccCcccc-cccCccccccccccee
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP--NLKNQSQLQYLYLSENQIS-REIPNWIWRVSVVGLH  278 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~  278 (440)
                      ..|-.|++++|.+...++.  ...+..|++|.+++|.+..+.  .+..+++|+.|.+++.+-+ ..+|..+....  +|.
T Consensus       150 tDLLfLDLS~NrLe~LPPQ--~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~--NL~  225 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLEMLPPQ--IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH--NLR  225 (1255)
T ss_pred             HhHhhhccccchhhhcCHH--HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh--hhh
Confidence            9999999999999877665  567888999999999876443  3667788888999887532 34666665544  499


Q ss_pred             EEEccCcccccccCC-ccCCceeEEEcCCccccCccc--CCCCCccEEEccCCcccccCCccccccCCCcceEecccccc
Q 045270          279 CLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNIH--QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL  355 (440)
Q Consensus       279 ~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  355 (440)
                      .++++.|.+..++.. ..+++|+.|++++|+++....  ....++++|+++.|.++ .+|..+++ +++|+.|+..+|++
T Consensus       226 dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  226 DVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKL  303 (1255)
T ss_pred             hccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcc
Confidence            999999999888775 568999999999999886433  33679999999999998 89998888 99999999999987


Q ss_pred             c-ccchhhhhccCCCCEEEcCCCcCCCCCchhhhc-cccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcc
Q 045270          356 T-GIIPASLCNATTLSLLDLSNNSFMKKSDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPC  431 (440)
Q Consensus       356 ~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  431 (440)
                      + +-+|..++.+.+|+.+..++|.+.-.|....-| .|+.|.|+.|.+. ..|+++.-++.|+.||+..|+-..-.|+
T Consensus       304 ~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  304 TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             cccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            5 237889999999999999999998888777644 4999999999999 7889999999999999999987655543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=2.3e-29  Score=237.95  Aligned_cols=388  Identities=27%  Similarity=0.317  Sum_probs=285.6

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL  101 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  101 (440)
                      ++.+||+++|.+.. .|.  .+..+++|+.|+++.|.+..  .|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|
T Consensus        46 ~L~~l~lsnn~~~~-fp~--~it~l~~L~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~L  119 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISS-FPI--QITLLSHLRQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYL  119 (1081)
T ss_pred             eeEEeecccccccc-CCc--hhhhHHHHhhcccchhhHhh--Cchhhhhhhcchhheeccchhh-cCchhHHhhhccccc
Confidence            47889999998753 554  68889999999999888854  6788888999999999999887 889999999999999


Q ss_pred             cCCCCcccCccchhhhccccc-------------------ceEEEecCCccCCCCCcccccccc-ccc----------cC
Q 045270          102 DFSFNQFSGSISSIRWEHLLN-------------------LVYAVLSDNSLNGSIPRSMFEFPI-FSN----------AS  151 (440)
Q Consensus       102 ~L~~~~~~~~~~~~~~~~l~~-------------------L~~L~l~~~~~~~~~~~~~~~l~~-l~~----------~~  151 (440)
                      ++++|.+...+..  +..++.                   ++.+++..+.+.+.++..+..+.. +..          ..
T Consensus       120 dlS~N~f~~~Pl~--i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~  197 (1081)
T KOG0618|consen  120 DLSFNHFGPIPLV--IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN  197 (1081)
T ss_pred             ccchhccCCCchh--HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence            9999987633322  222222                   444444444444444444443322 000          12


Q ss_pred             cccccEEEcCCCccCC-------------------ccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCC
Q 045270          152 SSALDTLDLSGNRLRG-------------------SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN  212 (440)
Q Consensus       152 ~~~L~~L~l~~~~~~~-------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  212 (440)
                      +.+|+.+....|.+..                   ... ..+...+|++++++.+++. ..+ ..+..+.+|+.+++..|
T Consensus       198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N  274 (1081)
T KOG0618|consen  198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHN  274 (1081)
T ss_pred             ccchhhhhhhhcccceEEecCcchheeeeccCcceeec-cccccccceeeecchhhhh-cch-HHHHhcccceEecccch
Confidence            2223333322222210                   000 0112356777777777775 455 56778888888888888


Q ss_pred             cccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCccccccc
Q 045270          213 SLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ  291 (440)
Q Consensus       213 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (440)
                      .+......  .....+|+.|.+..|.+..+|. ....+.|+.|++..|++. ..|+.+.......++.++.+.+.+..++
T Consensus       275 ~l~~lp~r--i~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp  351 (1081)
T KOG0618|consen  275 RLVALPLR--ISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLP  351 (1081)
T ss_pred             hHHhhHHH--HhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccc
Confidence            88544433  4567789999999999998888 555899999999999885 5666665555556788888888887776


Q ss_pred             CC--ccCCceeEEEcCCccccCcccCC---CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhcc
Q 045270          292 GP--YSIPALRFIDLSSHQLRGNIHQL---PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNA  366 (440)
Q Consensus       292 ~~--~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  366 (440)
                      ..  ...+.|+.|++.+|++.+.....   +..|+.|+|++|.+. .+|......++.|+.|++++|+++ .+|+.+..+
T Consensus       352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~  429 (1081)
T KOG0618|consen  352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANL  429 (1081)
T ss_pred             cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence            54  45889999999999999876554   678999999999998 889888877999999999999999 678999999


Q ss_pred             CCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCC-chhhhhcCCCCcEEECCCCccc
Q 045270          367 TTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGT-VPKSIANCKMLEVLNLGNNQFS  426 (440)
Q Consensus       367 ~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~  426 (440)
                      +.|++|....|.+...|.....+.|+.+|++.|.+... +++.... |+|++||++||...
T Consensus       430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence            99999999999999999777788899999999999854 3333332 89999999999854

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.92  E-value=1.4e-27  Score=226.03  Aligned_cols=387  Identities=26%  Similarity=0.310  Sum_probs=241.0

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL  101 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  101 (440)
                      +++.|+++.|.+-....+  ......+|+.|++++|.+..  .|..+..+.+|+.|.++.|.+. ..|.+..++.+|++|
T Consensus        22 ~~~~ln~~~N~~l~~pl~--~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~l   96 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLE--FVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYL   96 (1081)
T ss_pred             HHHhhhccccccccCchH--HhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhh
Confidence            478889999877653322  56667779999999998854  6888999999999999999998 788899999999999


Q ss_pred             cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc-----------cCcccccEEEcCCCccCCccc
Q 045270          102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN-----------ASSSALDTLDLSGNRLRGSIP  170 (440)
Q Consensus       102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-----------~~~~~L~~L~l~~~~~~~~~~  170 (440)
                      .|.+|.+. ..|. .+..+.+|++|++++|.+. .+|..+..+.....           ..-..++.+++..+.+.+.++
T Consensus        97 nL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~  173 (1081)
T KOG0618|consen   97 NLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFL  173 (1081)
T ss_pred             eeccchhh-cCch-hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchh
Confidence            99999987 4443 4889999999999999987 77776665532211           011225556666666665566


Q ss_pred             cccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCcc-----------------ccCCccccceee
Q 045270          171 VSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSR-----------------NYSFSPMLELLN  233 (440)
Q Consensus       171 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~~~~~L~~L~  233 (440)
                      ..+..+..  .|++.+|.+. ...   +..+.+|+.+....|++.......                 ......+++.++
T Consensus       174 ~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~d  247 (1081)
T KOG0618|consen  174 IDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLD  247 (1081)
T ss_pred             cchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeee
Confidence            55555555  6888888764 222   344455555544444432211100                 011234577777


Q ss_pred             cCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCc-cCCceeEEEcCCccccC
Q 045270          234 LASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPY-SIPALRFIDLSSHQLRG  311 (440)
Q Consensus       234 l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  311 (440)
                      ++.+.++.+|. +..+.+|+.++...|.+. ..|..+...  .+|+.+.+.+|.++.+++.. ....|++|++..|++..
T Consensus       248 is~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~--~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~  324 (1081)
T KOG0618|consen  248 ISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRI--TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS  324 (1081)
T ss_pred             cchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhh--hhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence            77777777766 666777777777777764 444444332  23777777777777777664 37888888888887764


Q ss_pred             cccCC----------------------------CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhh
Q 045270          312 NIHQL----------------------------PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASL  363 (440)
Q Consensus       312 ~~~~~----------------------------~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  363 (440)
                      .....                            .+.|+.|.+.+|.+++..-..+.. ++.|+.|++++|++.......+
T Consensus       325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~  403 (1081)
T KOG0618|consen  325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKL  403 (1081)
T ss_pred             cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc-ccceeeeeecccccccCCHHHH
Confidence            33211                            113444444444443222221221 4455555555555543334444


Q ss_pred             hccCCCCEEEcCCCcCCCCCchhhhc-cccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270          364 CNATTLSLLDLSNNSFMKKSDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK  428 (440)
Q Consensus       364 ~~~~~L~~L~l~~n~i~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  428 (440)
                      ..++.|++|++++|+++.+|.....+ .|++|...+|.+. ..| .+.+++.|+.+|++.|.++..
T Consensus       404 ~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  404 RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence            44555555555555555554433322 2555555555555 444 466677777777777777644

>PLN03210 Resistant to P

Probab=99.90  E-value=4.6e-22  Score=208.22  Aligned_cols=269  Identities=21%  Similarity=0.233  Sum_probs=117.4

Q ss_pred             cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceee
Q 045270          154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN  233 (440)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  233 (440)
                      +|++|++.++.+. .++..+..+++|+.|+++++.....++  .++.+++|+.|++++|......+.. +..+++|+.|+
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~  687 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLD  687 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchh-hhccCCCCEEe
Confidence            4444444444443 333333444444444444433211222  1334444444444444322211111 33444444444


Q ss_pred             cCCC-CCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC-
Q 045270          234 LASC-KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG-  311 (440)
Q Consensus       234 l~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-  311 (440)
                      +++| .++.+|....+++|+.|++++|......|..     ..+|+.|+++++.+..++....+++|++|.+.++.... 
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence            4443 3344443224444555555544332222221     12344555555554444443344444444444321110 


Q ss_pred             ---------cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcC-CC
Q 045270          312 ---------NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF-MK  381 (440)
Q Consensus       312 ---------~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i-~~  381 (440)
                               .....+++|+.|++++|...+.+|..+.. +++|+.|++++|...+.+|..+ .+++|+.|++++|.. ..
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence                     01112345566666655544455555443 5566666666553332344333 455566666655432 22


Q ss_pred             CCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCC
Q 045270          382 KSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDA  436 (440)
Q Consensus       382 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~  436 (440)
                      ++..  ..+|+.|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+
T Consensus       841 ~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L  892 (1153)
T PLN03210        841 FPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL  892 (1153)
T ss_pred             cccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence            2221  234556666655555 345555555566666665554444444443333

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=7.5e-22  Score=206.64  Aligned_cols=354  Identities=19%  Similarity=0.199  Sum_probs=201.3

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCC-----CccccchhcC-CCCcEEEcccCccccCCcccccc
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNG-----TQIPSKLANI-SSLTYLNLSDAGFAGHIPLQISS   94 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~l~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~   94 (440)
                      .+|+.+.+....+........+|..+++|+.|.+..+....     ..+|..+..+ ++|+.|.+.++.+. .+|..+ .
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~  609 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R  609 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence            45666665544443322223368888899988886543211     1256666655 45888888887776 667666 4


Q ss_pred             cccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccc
Q 045270           95 MARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF  174 (440)
Q Consensus        95 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~  174 (440)
                      ..+|++|++.++.+.. ++. .+..+++|+.++++++.....+|. +.        .+++|++|++++|.....+|..+.
T Consensus       610 ~~~L~~L~L~~s~l~~-L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--------~l~~Le~L~L~~c~~L~~lp~si~  678 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK-LWD-GVHSLTGLRNIDLRGSKNLKEIPD-LS--------MATNLETLKLSDCSSLVELPSSIQ  678 (1153)
T ss_pred             ccCCcEEECcCccccc-ccc-ccccCCCCCEEECCCCCCcCcCCc-cc--------cCCcccEEEecCCCCccccchhhh
Confidence            6788888888887763 332 256778888888887754445553 32        336788888888765557777788


Q ss_pred             cccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEE
Q 045270          175 ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYL  254 (440)
Q Consensus       175 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L  254 (440)
                      .+++|+.|++++|.....++..  .++++|+.|++++|......+.    ...+|+.|++.++.++.+|....+++|+.|
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L  752 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRLENLDEL  752 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccccccccccc
Confidence            8888888888887544344432  2677888888887754322221    245677888888877777763345566666


Q ss_pred             eccCcccccccCcc------cccccccceeEEEccCccc-ccccCC-ccCCceeEEEcCCccccCcccC--CCCCccEEE
Q 045270          255 YLSENQISREIPNW------IWRVSVVGLHCLNLSHNLL-VGFQGP-YSIPALRFIDLSSHQLRGNIHQ--LPNNLIYID  324 (440)
Q Consensus       255 ~l~~~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~-~~~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~  324 (440)
                      .+.++.... ....      ......++|+.|++++|.. ..++.. ..+++|+.|++++|...+.++.  .+++|+.|+
T Consensus       753 ~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~  831 (1153)
T PLN03210        753 ILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLD  831 (1153)
T ss_pred             cccccchhh-ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEE
Confidence            555432110 0000      0001123466666665532 222221 3455666666665543322222  145566666


Q ss_pred             ccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCC-cCCCCCchhh-hccccEEECCCC
Q 045270          325 FSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN-SFMKKSDAFL-NCLLQTLDLNGN  399 (440)
Q Consensus       325 L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~-~~~L~~L~l~~n  399 (440)
                      +++|.....+|..    .++|+.|++++|.++ ..|.++..+++|+.|++++| .+..++.... ...|+.+++++|
T Consensus       832 Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        832 LSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            6665443233321    345666666666655 34555666666666666553 3343332221 233555565555

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=1.8e-24  Score=186.51  Aligned_cols=252  Identities=24%  Similarity=0.268  Sum_probs=189.5

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEccc-CccccCCcccccccccCc
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARLV   99 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~   99 (440)
                      ...+.|+|..|.|+...+.  +|+.++.||.||++.|.+... -|++|.+++.|..|-+.+ |.|+......|.++..|+
T Consensus        67 ~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             CcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            3788999999999976666  899999999999999999887 799999999999988877 888866666689999999


Q ss_pred             eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC------------C
Q 045270          100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR------------G  167 (440)
Q Consensus       100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~------------~  167 (440)
                      .|.+.-|++. .+...++..++++..|.+.+|.+. .++...+       .....++++.+..|+.-            .
T Consensus       144 rLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf-------~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  144 RLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTF-------QGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             HHhcChhhhc-chhHHHHHHhhhcchhcccchhhh-hhccccc-------cchhccchHhhhcCccccccccchhhhHHh
Confidence            9999999987 777778999999999999999987 5555332       23367777777776621            0


Q ss_pred             ccccccccccCccEEec-------------------------cccccccccchhhHhcCCCCcEEEcCCCcccccCCccc
Q 045270          168 SIPVSVFELKKLTSLLL-------------------------SSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN  222 (440)
Q Consensus       168 ~~~~~~~~~~~L~~L~l-------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  222 (440)
                      ..+..+++..-..-..+                         ..+......+...|+.+++|++|++++|.++.+.... 
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a-  293 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA-  293 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh-
Confidence            11112222111111111                         1222223455667888889999999999888776665 


Q ss_pred             cCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCccc
Q 045270          223 YSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLL  287 (440)
Q Consensus       223 ~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  287 (440)
                      |.....++.|.+..|++..+..  |.++..|+.|++.+|+++...|..|....  +|.+|++-.|.+
T Consensus       294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~--~l~~l~l~~Np~  358 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF--SLSTLNLLSNPF  358 (498)
T ss_pred             hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc--eeeeeehccCcc
Confidence            7778889999999998887766  88888899999999998877777765433  388888777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.1e-21  Score=189.36  Aligned_cols=264  Identities=25%  Similarity=0.281  Sum_probs=162.1

Q ss_pred             ceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCC
Q 045270          123 LVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLG  202 (440)
Q Consensus       123 L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  202 (440)
                      -..|+++.+.++ .+|..+.          ++|+.|++.+|.+. .+|..   .++|++|++++|.++ .++.    ..+
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~----------~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~  262 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP----------AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPP  262 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh----------cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----ccc
Confidence            444555555554 4554432          24555555555555 33321   355666666665554 3331    234


Q ss_pred             CCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEc
Q 045270          203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL  282 (440)
Q Consensus       203 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  282 (440)
                      +|+.|++.+|.+.....     .++.|+.|++.+|.++.+|.  .+++|+.|++++|.+.+ +|...     ..|+.|.+
T Consensus       263 sL~~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~-Lp~lp-----~~L~~L~L  329 (788)
T PRK15387        263 GLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS-LPALP-----SELCKLWA  329 (788)
T ss_pred             ccceeeccCCchhhhhh-----chhhcCEEECcCCccccccc--cccccceeECCCCcccc-CCCCc-----cccccccc
Confidence            55666666665543221     12346666666666666654  23556666666666653 33211     13566666


Q ss_pred             cCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhh
Q 045270          283 SHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS  362 (440)
Q Consensus       283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  362 (440)
                      ++|.++.++..  ..+|+.|++++|++.. ++..+.+|+.|++++|.+. .+|..    +++|+.|++++|.+++ +|..
T Consensus       330 s~N~L~~LP~l--p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l  400 (788)
T PRK15387        330 YNNQLTSLPTL--PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL  400 (788)
T ss_pred             ccCcccccccc--ccccceEecCCCccCC-CCCCCcccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc
Confidence            66666655432  2467777777777664 3334567888888888777 45542    4578888888888874 3432


Q ss_pred             hhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCccccc
Q 045270          363 LCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLY  434 (440)
Q Consensus       363 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  434 (440)
                         .++|+.|++++|.++.+|..  ...|+.|++++|+++ .+|..+.++++|+.|++++|++++..|..+.
T Consensus       401 ---~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        401 ---PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             ---ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence               35788888888888887653  346888888888888 5677788888888888888888887776653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=9.2e-20  Score=177.96  Aligned_cols=258  Identities=26%  Similarity=0.300  Sum_probs=141.6

Q ss_pred             CCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccC
Q 045270           72 SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS  151 (440)
Q Consensus        72 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~  151 (440)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++.+|.++ .++.    ..++|++|++++|+++ .+|...          
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~lp----------  261 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVLP----------  261 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCcc----------
Confidence            44667777777776 5666554  36777777777776 3332    2467777777777776 445321          


Q ss_pred             cccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccce
Q 045270          152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL  231 (440)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  231 (440)
                       ++|+.|++++|.+. .+|..   ..+|+.|++++|.+. .++.    ..++|+.|++++|.+.....     ....|+.
T Consensus       262 -~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~Lp~-----lp~~L~~  326 (788)
T PRK15387        262 -PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPA-----LPSELCK  326 (788)
T ss_pred             -cccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccCCC-----Ccccccc
Confidence             46677777777665 34432   245667777777665 3332    23567777777776654321     1234666


Q ss_pred             eecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC
Q 045270          232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG  311 (440)
Q Consensus       232 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  311 (440)
                      |.+.+|.++.+|.+  ..+|+.|++++|++++ +|...     .++..|++++|.+..++..  .++|+.|++++|.+..
T Consensus       327 L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~-LP~lp-----~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~  396 (788)
T PRK15387        327 LWAYNNQLTSLPTL--PSGLQELSVSDNQLAS-LPTLP-----SELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS  396 (788)
T ss_pred             cccccCcccccccc--ccccceEecCCCccCC-CCCCC-----cccceehhhccccccCccc--ccccceEEecCCcccC
Confidence            67777776666642  2456677777766653 33221     2355666666665544432  2345555555554442


Q ss_pred             cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCC
Q 045270          312 NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFM  380 (440)
Q Consensus       312 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~  380 (440)
                       ++..+.+|+.|++++|.+. .+|..    +..|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus       397 -LP~l~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        397 -LPVLPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             -CCCcccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence             2222344555555555544 33321    234444555555554 33444445555555555555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=5.1e-18  Score=166.86  Aligned_cols=246  Identities=26%  Similarity=0.400  Sum_probs=133.6

Q ss_pred             ccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhc
Q 045270          121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILN  200 (440)
Q Consensus       121 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  200 (440)
                      .+...|+++++.++ .+|..+.          +.++.|++++|.+. .+|..+.  ++|++|++++|.+. .++.. +  
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip----------~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~-l--  239 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP----------EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPAT-L--  239 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc----------cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChh-h--
Confidence            45677888877776 5665442          46778888888777 5565443  47788888777775 44422 1  


Q ss_pred             CCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeE
Q 045270          201 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC  279 (440)
Q Consensus       201 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  279 (440)
                      ..+|+.|++++|.+...+..    ...+|+.|++++|.++.+|. +  +++|+.|++++|.++. +|..+.    .+|+.
T Consensus       240 ~~~L~~L~Ls~N~L~~LP~~----l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp----~sL~~  308 (754)
T PRK15370        240 PDTIQEMELSINRITELPER----LPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT-LPAHLP----SGITH  308 (754)
T ss_pred             hccccEEECcCCccCcCChh----HhCCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc-Ccccch----hhHHH
Confidence            23567777777766533221    12356777777776666654 2  2466666666666653 332221    13555


Q ss_pred             EEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccc
Q 045270          280 LNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGII  359 (440)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  359 (440)
                      |++++|.++.++                      ...+++|+.|++++|.++ .+|..+   +++|+.|++++|.++ .+
T Consensus       309 L~Ls~N~Lt~LP----------------------~~l~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~L  361 (754)
T PRK15370        309 LNVQSNSLTALP----------------------ETLPPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VL  361 (754)
T ss_pred             HHhcCCccccCC----------------------ccccccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cC
Confidence            555555554433                      223344555555555554 344332   245555555555555 23


Q ss_pred             hhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchh----hhhcCCCCcEEECCCCccc
Q 045270          360 PASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPK----SIANCKMLEVLNLGNNQFS  426 (440)
Q Consensus       360 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~  426 (440)
                      |..+  .++|+.|++++|+++.+|... ...|+.|++++|++. .+|.    .++.++.+..|++.+|+++
T Consensus       362 P~~l--p~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        362 PETL--PPTITTLDVSRNALTNLPENL-PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             Chhh--cCCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            3333  245556666666555554432 224555666666555 2222    2233455566666666553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=7e-18  Score=165.89  Aligned_cols=247  Identities=23%  Similarity=0.339  Sum_probs=176.8

Q ss_pred             ccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccccccc
Q 045270           96 ARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE  175 (440)
Q Consensus        96 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~  175 (440)
                      .+...|+++++.++ .+|.. +  .+.++.|++++|.++ .+|..+.          .+|++|++++|.+. .+|..+. 
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~-I--p~~L~~L~Ls~N~Lt-sLP~~l~----------~nL~~L~Ls~N~Lt-sLP~~l~-  240 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPAC-I--PEQITTLILDNNELK-SLPENLQ----------GNIKTLYANSNQLT-SIPATLP-  240 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcc-c--ccCCcEEEecCCCCC-cCChhhc----------cCCCEEECCCCccc-cCChhhh-
Confidence            35678999998887 44431 2  358999999999998 7776553          58999999999988 5676553 


Q ss_pred             ccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEe
Q 045270          176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLY  255 (440)
Q Consensus       176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~  255 (440)
                       ++|+.|++++|.+. .++...   ..+|+.|++++|.++..+..    ..++|+.|++++|.++.+|.. -.++|+.|+
T Consensus       241 -~~L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~LP~~----l~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~  310 (754)
T PRK15370        241 -DTIQEMELSINRIT-ELPERL---PSALQSLDLFHNKISCLPEN----LPEELRYLSVYDNSIRTLPAH-LPSGITHLN  310 (754)
T ss_pred             -ccccEEECcCCccC-cCChhH---hCCCCEEECcCCccCccccc----cCCCCcEEECCCCccccCccc-chhhHHHHH
Confidence             57999999999987 555432   25799999999998754322    235899999999999988861 135799999


Q ss_pred             ccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCC
Q 045270          256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIP  335 (440)
Q Consensus       256 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  335 (440)
                      +++|.+.. +|..+    .++|+.|++++|.++.++.. .+++|+.|++++|++.......+++|+.|++++|.+. .+|
T Consensus       311 Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt-~LP  383 (754)
T PRK15370        311 VQSNSLTA-LPETL----PPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALT-NLP  383 (754)
T ss_pred             hcCCcccc-CCccc----cccceeccccCCccccCChh-hcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCC-CCC
Confidence            99999874 45433    24689999999988876543 2467777888777766544444567777777777776 566


Q ss_pred             ccccccCCCcceEecccccccccchhhh----hccCCCCEEEcCCCcCC
Q 045270          336 ADTGNFMPRLRYFCAANNGLTGIIPASL----CNATTLSLLDLSNNSFM  380 (440)
Q Consensus       336 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~~~~L~~L~l~~n~i~  380 (440)
                      ..+   .+.|+.|++++|++. .+|..+    ..++.+..|++.+|.+.
T Consensus       384 ~~l---~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        384 ENL---PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HhH---HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            543   235777777777776 334333    33466677777777665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.75  E-value=3.2e-20  Score=160.45  Aligned_cols=292  Identities=21%  Similarity=0.209  Sum_probs=156.6

Q ss_pred             cccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecC-CccCCCCCcccc
Q 045270           64 IPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSD-NSLNGSIPRSMF  142 (440)
Q Consensus        64 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~  142 (440)
                      +|..+.  +.-..++|..|+|+...+.+|+.+++||.|+|++|.|+ .+...+|..++++..|-+.+ |+|+ .+|+..+
T Consensus        61 VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F  136 (498)
T KOG4237|consen   61 VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAF  136 (498)
T ss_pred             CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-hhhhhHh
Confidence            455554  56667777778777666777777788888888888777 66556677777777765554 6666 5555444


Q ss_pred             ccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccc
Q 045270          143 EFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN  222 (440)
Q Consensus       143 ~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  222 (440)
                             .++..++.|.+.-|++.....+.|..++++..|.+++|.+. .+....|..+..++.+.+..|.+...     
T Consensus       137 -------~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icd-----  203 (498)
T KOG4237|consen  137 -------GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICD-----  203 (498)
T ss_pred             -------hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccc-----
Confidence                   33456666666666666555566666777777777777665 44444566666666666655543111     


Q ss_pred             cCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEE
Q 045270          223 YSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFI  302 (440)
Q Consensus       223 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L  302 (440)
                       .+++.+..... .+.+ +   ++...-..-..+.+..+....+..+...    ++          +++         .=
T Consensus       204 -CnL~wla~~~a-~~~i-e---tsgarc~~p~rl~~~Ri~q~~a~kf~c~----~e----------sl~---------s~  254 (498)
T KOG4237|consen  204 -CNLPWLADDLA-MNPI-E---TSGARCVSPYRLYYKRINQEDARKFLCS----LE----------SLP---------SR  254 (498)
T ss_pred             -cccchhhhHHh-hchh-h---cccceecchHHHHHHHhcccchhhhhhh----HH----------hHH---------Hh
Confidence             11111110000 0000 0   1111111111122222211111111000    00          000         00


Q ss_pred             EcCCccccC----cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCc
Q 045270          303 DLSSHQLRG----NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS  378 (440)
Q Consensus       303 ~l~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  378 (440)
                      ..+.+....    ..+..+++|++|+|++|+++ .+...+|.....++.|++..|++.......|.++..|+.|++.+|+
T Consensus       255 ~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~  333 (498)
T KOG4237|consen  255 LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ  333 (498)
T ss_pred             hccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence            000111111    11223456777777777776 4554455557777777777777776666677777777777777777


Q ss_pred             CCCCCchhh--hccccEEECCCCccc
Q 045270          379 FMKKSDAFL--NCLLQTLDLNGNRLQ  402 (440)
Q Consensus       379 i~~~~~~~~--~~~L~~L~l~~n~~~  402 (440)
                      |+.+....|  ..+|.+|++-.|++-
T Consensus       334 it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  334 ITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             eEEEecccccccceeeeeehccCccc
Confidence            777643333  234777777766554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=2.3e-17  Score=150.87  Aligned_cols=42  Identities=29%  Similarity=0.221  Sum_probs=19.7

Q ss_pred             ccccCCCCeEEecCCccCCC---ccccchhcCCCCcEEEcccCcc
Q 045270           43 LFSLHYLRSLNLARTSFNGT---QIPSKLANISSLTYLNLSDAGF   84 (440)
Q Consensus        43 ~~~l~~L~~L~l~~~~~~~~---~l~~~~~~l~~L~~L~l~~~~~   84 (440)
                      +..++.|++++++++.+...   .++..+...+.+++++++++.+
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~   63 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET   63 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence            44445555555555554321   1233334444555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.2e-18  Score=132.30  Aligned_cols=158  Identities=22%  Similarity=0.371  Sum_probs=135.0

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .+|++|.||+|+++. +|+  .+..+.+|+.|++++|.+.+  +|..++.++.|+.|++.-|++. ..|+.|+.+|.|+.
T Consensus        33 s~ITrLtLSHNKl~~-vpp--nia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTV-VPP--NIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhcccCceee-cCC--cHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            689999999999986 444  68999999999999999854  7999999999999999999887 89999999999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      ||+.+|.+........|-.++.|+.|++++|.+. .+|..++++        ++|+.|.+..|.+. .+|..++.+..|+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~l--------t~lqil~lrdndll-~lpkeig~lt~lr  176 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKL--------TNLQILSLRDNDLL-SLPKEIGDLTRLR  176 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhh--------cceeEEeeccCchh-hCcHHHHHHHHHH
Confidence            9999998876665556777888888999999887 888888776        68888888888877 7888888888888


Q ss_pred             EEeccccccccccch
Q 045270          181 SLLLSSNNLHGTVQL  195 (440)
Q Consensus       181 ~L~l~~~~~~~~~~~  195 (440)
                      +|.+.+|+++ ..++
T Consensus       177 elhiqgnrl~-vlpp  190 (264)
T KOG0617|consen  177 ELHIQGNRLT-VLPP  190 (264)
T ss_pred             HHhcccceee-ecCh
Confidence            8888888886 4443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=8e-17  Score=147.23  Aligned_cols=84  Identities=26%  Similarity=0.293  Sum_probs=51.0

Q ss_pred             CCCcceEecccccccccchhhhhc-----cCCCCEEEcCCCcCCCCCc------hhhhccccEEECCCCcccCCch----
Q 045270          342 MPRLRYFCAANNGLTGIIPASLCN-----ATTLSLLDLSNNSFMKKSD------AFLNCLLQTLDLNGNRLQGTVP----  406 (440)
Q Consensus       342 ~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l~~n~i~~~~~------~~~~~~L~~L~l~~n~~~~~~~----  406 (440)
                      +++|++|++++|.+++.....+..     .+.|++|++++|.+++...      ....+.|+.+++++|.+.+...    
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~  299 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA  299 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence            566777777777666433332221     2677788887777763311      1112357888888888886533    


Q ss_pred             hhhhcC-CCCcEEECCCCcc
Q 045270          407 KSIANC-KMLEVLNLGNNQF  425 (440)
Q Consensus       407 ~~~~~l-~~L~~L~l~~n~~  425 (440)
                      ..+... +.|+.+++.+|++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         300 ESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHhhcCCchhhcccCCCCC
Confidence            333334 6788888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=1.2e-15  Score=117.44  Aligned_cols=160  Identities=29%  Similarity=0.467  Sum_probs=82.3

Q ss_pred             ccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhccccc
Q 045270           43 LFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLN  122 (440)
Q Consensus        43 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~  122 (440)
                      +..+.+++.|.+++|++..  +|..+..+.+|+.|++.+|++. .+|..++.+++|++|++.-|++.             
T Consensus        29 Lf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-------------   92 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-------------   92 (264)
T ss_pred             ccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-------------
Confidence            4455566666666666633  4555666666666666666665 56666666666666666655543             


Q ss_pred             ceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC-CccccccccccCccEEeccccccccccchhhHhcC
Q 045270          123 LVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR-GSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL  201 (440)
Q Consensus       123 L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  201 (440)
                                   ..|++++.+        +.|++|++.+|.+. ..+|..|+.+..|+-|.+++|.+. ..+ ...+.+
T Consensus        93 -------------~lprgfgs~--------p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp-~dvg~l  149 (264)
T KOG0617|consen   93 -------------ILPRGFGSF--------PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILP-PDVGKL  149 (264)
T ss_pred             -------------cCccccCCC--------chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCC-hhhhhh
Confidence                         444444433        24444555444433 234444444555555555555442 222 234444


Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP  243 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  243 (440)
                      ++|+.|.+..|.+...+..  .+.+..|++|++.+|.++.+|
T Consensus       150 t~lqil~lrdndll~lpke--ig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  150 TNLQILSLRDNDLLSLPKE--IGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             cceeEEeeccCchhhCcHH--HHHHHHHHHHhcccceeeecC
Confidence            5555555544443322111  334445555555555555554

>PLN03150 hypothetical protein; Provisional

Probab=99.34  E-value=4.5e-12  Score=124.63  Aligned_cols=128  Identities=33%  Similarity=0.547  Sum_probs=105.5

Q ss_pred             CCCCCCCCc----ceeeeeeCCC-----CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCC
Q 045270            2 QWRQSTDCC----DWSGVDCDEA-----GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANIS   72 (440)
Q Consensus         2 ~w~~~~~~~----~~~~~~~~~~-----~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~   72 (440)
                      +|+ +..|+    .|.||.|...     ..|+.|+|+++.+.+..|.  .+..+++|+.|++++|.+.+. +|..++.++
T Consensus       391 ~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~  466 (623)
T PLN03150        391 GWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSIT  466 (623)
T ss_pred             CCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCC
Confidence            686 33332    6999999632     2599999999999998888  899999999999999998776 888899999


Q ss_pred             CCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCcc
Q 045270           73 SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSL  133 (440)
Q Consensus        73 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  133 (440)
                      +|+.|++++|.+.+.+|..++++++|++|+|++|.+.+.++...-....++..+++.+|..
T Consensus       467 ~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            9999999999999999999999999999999999998887764333344666777777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=3.3e-13  Score=119.07  Aligned_cols=215  Identities=25%  Similarity=0.214  Sum_probs=126.7

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCcccc--CCcccccccccCceecCCCCcccCccchhhhcc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAG--HIPLQISSMARLVALDFSFNQFSGSISSIRWEH  119 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  119 (440)
                      .-+++..||.+.+.++.+.....-.....+++++.|+|++|-+..  .+......+|+|+.|+++.|++........-..
T Consensus       116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            345677777777777766433111355667777777777775431  222233567777777777777764444434446


Q ss_pred             cccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHh
Q 045270          120 LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKIL  199 (440)
Q Consensus       120 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  199 (440)
                      +++|+.|.++.|.++..-...+.       ..+++|+.|.+.+|...........-+..|++|++++|.+...-.....+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~-------~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~  268 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWIL-------LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG  268 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHH-------HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence            67777777777776532222221       33467777777777422122223334566777777777664222223455


Q ss_pred             cCCCCcEEEcCCCcccccCCccc-----cCCccccceeecCCCCCCCCCC---CcccCcccEEeccCccccc
Q 045270          200 NLGNLAKLDLSYNSLAVDESSRN-----YSFSPMLELLNLASCKLREIPN---LKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       200 ~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~  263 (440)
                      .++.|..|+++.+.+.+......     ...+++|++|++..|++..++.   +..+++|+.|.+..+.++.
T Consensus       269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            67777777777777654433321     2445677777777777765555   4555666777766666653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.4e-12  Score=115.24  Aligned_cols=203  Identities=20%  Similarity=0.195  Sum_probs=130.9

Q ss_pred             hcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC----CcccCcccEEeccCcccccccCcccccccc
Q 045270          199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN----LKNQSQLQYLYLSENQISREIPNWIWRVSV  274 (440)
Q Consensus       199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  274 (440)
                      +++.+|+.+.+.++.+...........+++++.|+++.|-+..+..    ...+|+|+.|+++.|.+........ ....
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhh
Confidence            4667788888888777654433345678888899998887765544    6678888888888887753322221 1234


Q ss_pred             cceeEEEccCcccccccCC---ccCCceeEEEcCCcccc---CcccCCCCCccEEEccCCcccccCC-ccccccCCCcce
Q 045270          275 VGLHCLNLSHNLLVGFQGP---YSIPALRFIDLSSHQLR---GNIHQLPNNLIYIDFSNNNFTSSIP-ADTGNFMPRLRY  347 (440)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~  347 (440)
                      +++++|.++.|.++.-...   ..+|+++.|++..|...   ......+..|++|+|++|++. ..+ ......+|.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence            5588888888877632221   34788888888877421   122333667888888888776 333 222333788888


Q ss_pred             Eeccccccccc-chhh-----hhccCCCCEEEcCCCcCCCCCc---hhhhccccEEECCCCcccC
Q 045270          348 FCAANNGLTGI-IPAS-----LCNATTLSLLDLSNNSFMKKSD---AFLNCLLQTLDLNGNRLQG  403 (440)
Q Consensus       348 L~l~~~~l~~~-~~~~-----~~~~~~L~~L~l~~n~i~~~~~---~~~~~~L~~L~l~~n~~~~  403 (440)
                      |+++.+.+.++ .|.+     -..++.|++|+++.|+|.+++.   .....+|+.|.+.+|++..
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            88888877643 2222     2345778888888888866632   3335567777777777663

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=2.5e-11  Score=97.77  Aligned_cols=133  Identities=27%  Similarity=0.318  Sum_probs=44.2

Q ss_pred             ccccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcc
Q 045270           41 ASLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEH  119 (440)
Q Consensus        41 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  119 (440)
                      +.+.+...+++|+++++.+...   +.++ .+.+|+.|++++|.+. .+. .+..+++|++|++++|.++ .+.......
T Consensus        13 ~~~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~   86 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKN   86 (175)
T ss_dssp             --------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH
T ss_pred             cccccccccccccccccccccc---cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHh
Confidence            3566677788888888887543   3344 4678888888888887 343 5777888888888888887 443322346


Q ss_pred             cccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc---cccccccccCccEEeccc
Q 045270          120 LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS---IPVSVFELKKLTSLLLSS  186 (440)
Q Consensus       120 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~  186 (440)
                      +++|++|++++|++.. + ..+..+     ..+++|++|++.+|++...   -...+..+|+|+.|+-..
T Consensus        87 lp~L~~L~L~~N~I~~-l-~~l~~L-----~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   87 LPNLQELYLSNNKISD-L-NELEPL-----SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TT--EEE-TTS---S-C-CCCGGG-----GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCcCCEEECcCCcCCC-h-HHhHHH-----HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            7888888888888752 2 223333     3457788888888877621   112344566666665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=3.5e-12  Score=109.64  Aligned_cols=247  Identities=26%  Similarity=0.254  Sum_probs=116.2

Q ss_pred             CceEEEeeccceeecccCC--CccccccCCCCeEEecCCccCC--Ccccc-------chhcCCCCcEEEcccCccccCCc
Q 045270           21 GHVIGLDLSTESISGGIEN--AASLFSLHYLRSLNLARTSFNG--TQIPS-------KLANISSLTYLNLSDAGFAGHIP   89 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~--~~l~~-------~~~~l~~L~~L~l~~~~~~~~~~   89 (440)
                      ..+++|+||+|.+..+-..  +..+.+-+.|+..+++.--...  ..+|+       ++-++++|++|+|++|.+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            5678888888877432211  1145666788888876542211  11333       33455678888888877654444


Q ss_pred             ccc----cccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCcc
Q 045270           90 LQI----SSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL  165 (440)
Q Consensus        90 ~~~----~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~  165 (440)
                      +.+    .++..|++|.|.+|.+.... ...++.  -|+++.  .++   ..            ..-++|+++...+|++
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~a-g~~l~~--al~~l~--~~k---k~------------~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEA-GGRLGR--ALFELA--VNK---KA------------ASKPKLRVFICGRNRL  169 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhH-HHHHHH--HHHHHH--HHh---cc------------CCCcceEEEEeecccc
Confidence            443    45667777777777664211 111111  000000  000   00            1113455555555544


Q ss_pred             CCc----cccccccccCccEEeccccccccc---cchhhHhcCCCCcEEEcCCCcccccCCc---cccCCccccceeecC
Q 045270          166 RGS----IPVSVFELKKLTSLLLSSNNLHGT---VQLDKILNLGNLAKLDLSYNSLAVDESS---RNYSFSPMLELLNLA  235 (440)
Q Consensus       166 ~~~----~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~  235 (440)
                      ...    ....|...+.|+.+.++.|.+...   .....+..+++|+.|++..|-++.....   ..+..++.|+.++++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            311    112233345555555555544210   1123344555555555555554422211   113344455566666


Q ss_pred             CCCCCCCCC-------CcccCcccEEeccCcccccccCcccc--cccccceeEEEccCccc
Q 045270          236 SCKLREIPN-------LKNQSQLQYLYLSENQISREIPNWIW--RVSVVGLHCLNLSHNLL  287 (440)
Q Consensus       236 ~~~l~~l~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~  287 (440)
                      +|.+..=..       -...|.|+.+.+.+|.++......+.  .-..+.|++|+++.|.+
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            665542111       22356666666666665432211111  01134466666666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=3.5e-12  Score=109.63  Aligned_cols=227  Identities=22%  Similarity=0.216  Sum_probs=134.5

Q ss_pred             cccccCCCCeEEecCCccCCCc---cccchhcCCCCcEEEcccCc---cccCCcccc-------cccccCceecCCCCcc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQ---IPSKLANISSLTYLNLSDAG---FAGHIPLQI-------SSMARLVALDFSFNQF  108 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~l~~L~~L~l~~~~---~~~~~~~~~-------~~l~~L~~L~L~~~~~  108 (440)
                      ..-.+..++++++++|.+....   +...+.+.+.|+..++++-.   ....+|.++       -.+++|++++||+|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            4557788889999998886431   44556677888888887642   122333332       3445666666666655


Q ss_pred             cCccch---hhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEecc
Q 045270          109 SGSISS---IRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLS  185 (440)
Q Consensus       109 ~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  185 (440)
                      ......   ..+..+..|++|+|.+|.+...-...++.          .|..+.         ...-.+.-+.|+.+...
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~----------al~~l~---------~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR----------ALFELA---------VNKKAASKPKLRVFICG  165 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH----------HHHHHH---------HHhccCCCcceEEEEee
Confidence            433211   23444556666666666554222222221          121111         11223456889999999


Q ss_pred             cccccc---ccchhhHhcCCCCcEEEcCCCcccccCC---ccccCCccccceeecCCCCCCCCCC------CcccCcccE
Q 045270          186 SNNLHG---TVQLDKILNLGNLAKLDLSYNSLAVDES---SRNYSFSPMLELLNLASCKLREIPN------LKNQSQLQY  253 (440)
Q Consensus       186 ~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l~~------~~~~~~L~~  253 (440)
                      +|++..   ......|..++.|+.+.++.|.|.....   ...+..+++|+.|++.+|-++.-..      ++.+++|+.
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            998752   1223467788899999999998764332   1226678889999999987763222      677788889


Q ss_pred             EeccCcccccccCccccc---ccccceeEEEccCccc
Q 045270          254 LYLSENQISREIPNWIWR---VSVVGLHCLNLSHNLL  287 (440)
Q Consensus       254 L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~  287 (440)
                      +++++|.+.......+..   -..|+|+.+.+.+|.+
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            999888887655554421   1233444444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=1.6e-10  Score=93.17  Aligned_cols=120  Identities=28%  Similarity=0.302  Sum_probs=35.8

Q ss_pred             CceeEEEcCCccccC--cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhh-hccCCCCEEE
Q 045270          297 PALRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASL-CNATTLSLLD  373 (440)
Q Consensus       297 ~~L~~L~l~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~  373 (440)
                      .++++|++.++.+..  .....+.+|+.|++++|.++ .+.. + ..++.|+.|++++|.++.. .+.+ ..+++|++|.
T Consensus        19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            344444444444432  11112345566666666655 3322 2 2256666677777766643 2233 3466677777


Q ss_pred             cCCCcCCCCCchh---hhccccEEECCCCcccCCch---hhhhcCCCCcEEEC
Q 045270          374 LSNNSFMKKSDAF---LNCLLQTLDLNGNRLQGTVP---KSIANCKMLEVLNL  420 (440)
Q Consensus       374 l~~n~i~~~~~~~---~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l  420 (440)
                      +++|+|.++....   ..++|+.|++.+|++....-   ..+..+|+|+.||-
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            7776666553221   13446666666666664321   24556677776553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=9.8e-12  Score=113.49  Aligned_cols=213  Identities=26%  Similarity=0.307  Sum_probs=161.1

Q ss_pred             EEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCC
Q 045270           25 GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS  104 (440)
Q Consensus        25 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~  104 (440)
                      +|.|++-+++.....+.. ..+..-...|++.|++..  +|..++.+..|+.+.++.|.+. .+|.++.++..|.+++|+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLS  129 (722)
T ss_pred             ccccccchhhcCCCcccc-ccccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhc
Confidence            456666666543333323 566777778899888854  7888888899999999999888 788999999999999999


Q ss_pred             CCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEec
Q 045270          105 FNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLL  184 (440)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  184 (440)
                      .|+++-.+..  ++.+ -|+.|.+++|+++ .+|..++..        ..|..|+.+.|.+. .+|..++++.+|+.|.+
T Consensus       130 ~NqlS~lp~~--lC~l-pLkvli~sNNkl~-~lp~~ig~~--------~tl~~ld~s~nei~-slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  130 SNQLSHLPDG--LCDL-PLKVLIVSNNKLT-SLPEEIGLL--------PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             cchhhcCChh--hhcC-cceeEEEecCccc-cCCcccccc--------hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence            9998733333  3333 5788889999987 888888744        68888999999887 78888889999999999


Q ss_pred             cccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC----CcccCcccEEeccCc
Q 045270          185 SSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN----LKNQSQLQYLYLSEN  259 (440)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~----~~~~~~L~~L~l~~~  259 (440)
                      ..|++. ..+.. +. .-.|..|+++.|++...+..  |..+..|+.|.|.+|.++.-|.    .+...-.+.|+...|
T Consensus       197 rRn~l~-~lp~E-l~-~LpLi~lDfScNkis~iPv~--fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  197 RRNHLE-DLPEE-LC-SLPLIRLDFSCNKISYLPVD--FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhh-hCCHH-Hh-CCceeeeecccCceeecchh--hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            998886 55543 34 45688899999988755543  7788899999999998887776    333344556666555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=3.9e-11  Score=101.16  Aligned_cols=108  Identities=21%  Similarity=0.202  Sum_probs=69.4

Q ss_pred             CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEEC
Q 045270          317 PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDL  396 (440)
Q Consensus       317 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l  396 (440)
                      .+.++.|+++.|.+. .+..  ...+++|+.|++++|.++. ...+=..+-+++.|.++.|.|.+.......-+|..||+
T Consensus       306 ~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDL  381 (490)
T ss_pred             ccceeEEecccccee-eehh--hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccc
Confidence            455666666666654 3322  2226777777777776662 33344456677777777777766655555566777777


Q ss_pred             CCCcccCCc-hhhhhcCCCCcEEECCCCccccc
Q 045270          397 NGNRLQGTV-PKSIANCKMLEVLNLGNNQFSDK  428 (440)
Q Consensus       397 ~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~  428 (440)
                      ++|++.... ...++++|.|+.+.+.+|++...
T Consensus       382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             cccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            777777432 34677888888888888887643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.07  E-value=1.4e-10  Score=116.66  Aligned_cols=126  Identities=26%  Similarity=0.287  Sum_probs=68.9

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCc--cCCCccccchhcCCCCcEEEcccCccccCCcccccccccCc
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTS--FNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV   99 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   99 (440)
                      .+|+..+-++.+.. .+   .-..++.|+.|-+..+.  +... .++.|..++.|++||+++|.-.+.+|..++.+.+||
T Consensus       524 ~~rr~s~~~~~~~~-~~---~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEH-IA---GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             heeEEEEeccchhh-cc---CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            45556555555432 11   22344466666666654  2222 233455677777777776655556777777777777


Q ss_pred             eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCC
Q 045270          100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSG  162 (440)
Q Consensus       100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~  162 (440)
                      +|+++++.+. .+|. .+.++..|.+|++..+.....+|.....+        ++|++|.+..
T Consensus       599 yL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--------~~Lr~L~l~~  651 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESIPGILLEL--------QSLRVLRLPR  651 (889)
T ss_pred             cccccCCCcc-ccch-HHHHHHhhheeccccccccccccchhhhc--------ccccEEEeec
Confidence            7777777666 3333 35666666666666554433333333223        4555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=9.6e-12  Score=113.54  Aligned_cols=174  Identities=29%  Similarity=0.409  Sum_probs=126.6

Q ss_pred             ceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcc
Q 045270          230 ELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ  308 (440)
Q Consensus       230 ~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  308 (440)
                      ...+++.|++..+|. +..+-.|+.+.+..|.+. .+|..+                        ..+..|.+++++.|+
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i------------------------~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI------------------------CNLEALTFLDLSSNQ  132 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh------------------------hhhhHHHHhhhccch
Confidence            344555555555554 444455555555444442 333333                        234555555666555


Q ss_pred             ccCcccCCC-CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh
Q 045270          309 LRGNIHQLP-NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL  387 (440)
Q Consensus       309 ~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  387 (440)
                      +.......+ --|+.|.+++|+++ .+|..+. ..+.|..|+.+.|.+. ..|..++++.+|+.|.+..|++.+.|....
T Consensus       133 lS~lp~~lC~lpLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~  209 (722)
T KOG0532|consen  133 LSHLPDGLCDLPLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC  209 (722)
T ss_pred             hhcCChhhhcCcceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence            543333221 25889999999998 8898888 4899999999999998 578889999999999999999999988888


Q ss_pred             hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccc
Q 045270          388 NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWL  433 (440)
Q Consensus       388 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l  433 (440)
                      .-.|.+||+++|++. .+|.+|.+|+.|+.|.|.+|++. ..|..|
T Consensus       210 ~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  210 SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            666999999999999 78889999999999999999985 334433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=5.5e-11  Score=100.30  Aligned_cols=106  Identities=29%  Similarity=0.425  Sum_probs=77.8

Q ss_pred             cCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeE
Q 045270          200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC  279 (440)
Q Consensus       200 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  279 (440)
                      .+..|+.+++++|.++....  .....|.++.|+++.|.+..+..+..+++|+.||+++|.++. ...|-....  ++++
T Consensus       282 TWq~LtelDLS~N~I~~iDE--SvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLG--NIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDE--SVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLG--NIKT  356 (490)
T ss_pred             hHhhhhhccccccchhhhhh--hhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh-hhhhHhhhc--CEee
Confidence            44568888999988864433  356778899999999998888888888999999999887753 344433333  3888


Q ss_pred             EEccCcccccccCCccCCceeEEEcCCcccc
Q 045270          280 LNLSHNLLVGFQGPYSIPALRFIDLSSHQLR  310 (440)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (440)
                      |.++.|.+.++.+...+-+|..|++++|++.
T Consensus       357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             eehhhhhHhhhhhhHhhhhheeccccccchh
Confidence            8888888888777766666666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=7.9e-10  Score=104.04  Aligned_cols=191  Identities=30%  Similarity=0.362  Sum_probs=93.7

Q ss_pred             EEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccC--cccEEeccCcccccccCcccccccccceeEEEcc
Q 045270          206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQS--QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS  283 (440)
Q Consensus       206 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  283 (440)
                      .+....+.+......  ....+.+..+.+.++.++.++......  +|+.|++++|.+.. .+..+.  ..++|+.|+++
T Consensus        97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~--~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLR--NLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccccCchh--hhcccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhh--ccccccccccC
Confidence            455555554211111  223356777777777777777633332  67777777776642 222221  23346666666


Q ss_pred             CcccccccCCc-cCCceeEEEcCCccccCcccC--CCCCccEEEccCCcccccCCccccccCCCcceEecccccccccch
Q 045270          284 HNLLVGFQGPY-SIPALRFIDLSSHQLRGNIHQ--LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP  360 (440)
Q Consensus       284 ~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  360 (440)
                      +|.+..++... ..+.++.+++++|++......  .+..|+++.+++|.+. ..+..... ++.+..+.+.+|++.. .+
T Consensus       172 ~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~-~~~l~~l~l~~n~~~~-~~  248 (394)
T COG4886         172 FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLELSNNKLED-LP  248 (394)
T ss_pred             CchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhh-cccccccccCCceeee-cc
Confidence            66666655544 455555555555555444332  3334555555555322 22222222 4444444444444442 23


Q ss_pred             hhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCC
Q 045270          361 ASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGT  404 (440)
Q Consensus       361 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~  404 (440)
                      ..++.++++++|++++|.++.++......+++.|+++++.+...
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             chhccccccceeccccccccccccccccCccCEEeccCcccccc
Confidence            44444455555555555555444322233355555555544433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.94  E-value=1.6e-09  Score=101.99  Aligned_cols=199  Identities=32%  Similarity=0.413  Sum_probs=138.0

Q ss_pred             eEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccc-cCceecCCCCcccCccchhhhcccccceEEEec
Q 045270           51 SLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMA-RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLS  129 (440)
Q Consensus        51 ~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~  129 (440)
                      .++...+.+..  ....+..++.++.|++.++.+. .++....... +|++|++++|.+. .++ ..++.+++|+.|+++
T Consensus        97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLS  171 (394)
T ss_pred             eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhh-hhhhccccccccccC
Confidence            35555555422  2234455577888888888887 6666667774 8888888888877 332 236788888888888


Q ss_pred             CCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEc
Q 045270          130 DNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDL  209 (440)
Q Consensus       130 ~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  209 (440)
                      +|++. .+|...+..        +.|+.|++++|.+. .+|........|+++.+.+|... . ....+..+..+..+.+
T Consensus       172 ~N~l~-~l~~~~~~~--------~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~-~~~~~~~~~~l~~l~l  239 (394)
T COG4886         172 FNDLS-DLPKLLSNL--------SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-E-LLSSLSNLKNLSGLEL  239 (394)
T ss_pred             Cchhh-hhhhhhhhh--------hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-e-cchhhhhccccccccc
Confidence            88887 555544332        67888888888887 66665555666888888888532 1 2234567777777777


Q ss_pred             CCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcc
Q 045270          210 SYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNW  268 (440)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~  268 (440)
                      .++++...  ......++.++.|++++|.++.++.+....+++.++++++.+....+..
T Consensus       240 ~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         240 SNNKLEDL--PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             CCceeeec--cchhccccccceeccccccccccccccccCccCEEeccCccccccchhh
Confidence            77776542  2235667778888888888888887888888888888888776554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.91  E-value=1.2e-09  Score=110.18  Aligned_cols=230  Identities=21%  Similarity=0.259  Sum_probs=141.0

Q ss_pred             CceEEEeeccce--eecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccC
Q 045270           21 GHVIGLDLSTES--ISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARL   98 (440)
Q Consensus        21 ~~l~~L~l~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L   98 (440)
                      +.+++|-+..+.  +......  .|..++.|++||+++|.-... +|+.++.+-+||+|+++++.+. .+|..+.++..|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~--ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGE--FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CccceEEEeecchhhhhcCHH--HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            468888888885  3332222  488899999999998766555 9999999999999999999998 999999999999


Q ss_pred             ceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccC
Q 045270           99 VALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKK  178 (440)
Q Consensus        99 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  178 (440)
                      .+|++..+.....+ ......+++|++|.+...... .....+..+     ..+.+|+.+.......  .+...+..++.
T Consensus       621 ~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el-----~~Le~L~~ls~~~~s~--~~~e~l~~~~~  691 (889)
T KOG4658|consen  621 IYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALS-NDKLLLKEL-----ENLEHLENLSITISSV--LLLEDLLGMTR  691 (889)
T ss_pred             heeccccccccccc-cchhhhcccccEEEeeccccc-cchhhHHhh-----hcccchhhheeecchh--HhHhhhhhhHH
Confidence            99999998876455 446777999999998765421 111112222     2224455544433221  11122233333


Q ss_pred             cc----EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCcc----ccC-CccccceeecCCCCCCC-CCCCccc
Q 045270          179 LT----SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSR----NYS-FSPMLELLNLASCKLRE-IPNLKNQ  248 (440)
Q Consensus       179 L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~-~~~~L~~L~l~~~~l~~-l~~~~~~  248 (440)
                      |.    .+.+.++..  ......+..+.+|+.|.+.++.+.......    ... .++++..+.+.++..-. +.+.-..
T Consensus       692 L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~  769 (889)
T KOG4658|consen  692 LRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFA  769 (889)
T ss_pred             HHHHhHhhhhccccc--ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhcc
Confidence            33    222222222  122234567778888888887764322111    011 13345555555553332 2223456


Q ss_pred             CcccEEeccCccccccc
Q 045270          249 SQLQYLYLSENQISREI  265 (440)
Q Consensus       249 ~~L~~L~l~~~~~~~~~  265 (440)
                      ++|+.+++..+....++
T Consensus       770 ~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             CcccEEEEecccccccC
Confidence            77888888777654433

>PLN03150 hypothetical protein; Provisional

Probab=98.85  E-value=7e-09  Score=102.29  Aligned_cols=106  Identities=32%  Similarity=0.481  Sum_probs=65.6

Q ss_pred             CcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcc
Q 045270           74 LTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSS  153 (440)
Q Consensus        74 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~  153 (440)
                      ++.|+|+++.+.+.+|..+..+++|++|+|++|.+.+.++. .+..+++|+.|++++|.+.+.+|..++.+        +
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L--------~  490 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQL--------T  490 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchHHhcC--------C
Confidence            55666666666666666666666666666666666655554 35666666666666666666666666544        4


Q ss_pred             cccEEEcCCCccCCccccccccc-cCccEEeccccc
Q 045270          154 ALDTLDLSGNRLRGSIPVSVFEL-KKLTSLLLSSNN  188 (440)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~  188 (440)
                      +|++|++++|.+.+.+|..+... .++..+++.+|.
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            66666666666666666555442 344555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.8e-09  Score=69.87  Aligned_cols=61  Identities=43%  Similarity=0.596  Sum_probs=51.5

Q ss_pred             CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcC
Q 045270          318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF  379 (440)
Q Consensus       318 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i  379 (440)
                      ++|++|++++|.+. .++...+..+++|++|++++|.+....+..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            36788888888887 77777777789999999999999888888899999999999988864

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=9.4e-11  Score=98.78  Aligned_cols=210  Identities=21%  Similarity=0.181  Sum_probs=133.1

Q ss_pred             CceEEEeeccceeecccCCCcccccc-CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCc
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSL-HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV   99 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   99 (440)
                      +.|.++.+-...+.+... +.-+.-+ +.|+++|++...++...+.-.++.+.+|+.|.+.++++.+.+...+++..+|+
T Consensus       159 rgV~v~Rlar~~~~~prl-ae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~  237 (419)
T KOG2120|consen  159 RGVIVFRLARSFMDQPRL-AEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLV  237 (419)
T ss_pred             CCeEEEEcchhhhcCchh-hhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccce
Confidence            356666666443332111 1123333 36888888887776554555567788888888888888877777888888889


Q ss_pred             eecCCCCc-ccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCC---cccccccc
Q 045270          100 ALDFSFNQ-FSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG---SIPVSVFE  175 (440)
Q Consensus       100 ~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~---~~~~~~~~  175 (440)
                      .|+|+.+. ++.......+..++.|..|++++|.........+..      ..-.+|+.|+++++.-.-   .+......
T Consensus       238 ~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~------hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  238 RLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA------HISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             eeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh------hhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            99888774 332223345778888888998888764332211111      122578888888875331   11122345


Q ss_pred             ccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC
Q 045270          176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC  237 (440)
Q Consensus       176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  237 (440)
                      +++|..|+++++.....--...+-.++.|++|.++.|..-.......+...|.|.+|++.++
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            78888899888754323333456678888888888875321111122667888999998877

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=3.8e-09  Score=89.24  Aligned_cols=214  Identities=21%  Similarity=0.196  Sum_probs=130.0

Q ss_pred             cccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEcccCcccc--CCcccccccccCceecCCCCcccCccchhhhc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNLSDAGFAG--HIPLQISSMARLVALDFSFNQFSGSISSIRWE  118 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~  118 (440)
                      .++....++.+.+-++.+........|+ ..++++.+||.+|.+..  .+..-+.++|+|+.|+|+.|.+...+.... .
T Consensus        40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~  118 (418)
T KOG2982|consen   40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-L  118 (418)
T ss_pred             eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-c
Confidence            3444555666677677665543334443 46788888888887752  344445678888888888888775554322 4


Q ss_pred             ccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCC--cccccccc-ccCccEEeccccccccccch
Q 045270          119 HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG--SIPVSVFE-LKKLTSLLLSSNNLHGTVQL  195 (440)
Q Consensus       119 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~--~~~~~~~~-~~~L~~L~l~~~~~~~~~~~  195 (440)
                      ...+|+.|.|.+..+......++.       ..++.+++|.++.|.+..  ........ -+.+++|.+..|...-....
T Consensus       119 p~~nl~~lVLNgT~L~w~~~~s~l-------~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~  191 (418)
T KOG2982|consen  119 PLKNLRVLVLNGTGLSWTQSTSSL-------DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK  191 (418)
T ss_pred             cccceEEEEEcCCCCChhhhhhhh-------hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH
Confidence            556788888877766433322221       233566777777664331  11111112 23566666666644322221


Q ss_pred             hh-HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC---CcccCcccEEeccCccccc
Q 045270          196 DK-ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN---LKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       196 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~  263 (440)
                      .. .+-++++..+.+..+.+........+...|.+.-|+++.+++..+.+   +.+++.|..|.++.+.+.+
T Consensus       192 ~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  192 NKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             HhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            11 23467778888888877766666656677777788888887775544   7777888888888777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=7.8e-09  Score=68.37  Aligned_cols=39  Identities=31%  Similarity=0.430  Sum_probs=15.4

Q ss_pred             hhcCCCCcEEEcccCccccCCcccccccccCceecCCCC
Q 045270           68 LANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFN  106 (440)
Q Consensus        68 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~  106 (440)
                      |.++++|++|++++|.+....+.+|..+++|++|++++|
T Consensus        21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            333444444444444443333333344444444444433

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=1.3e-09  Score=102.74  Aligned_cols=244  Identities=25%  Similarity=0.288  Sum_probs=137.6

Q ss_pred             ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL  232 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  232 (440)
                      ..++.+.+..+.+. ..-..+..+.++..|++.+|.+. .+.. .+..+++|+.|++++|.|+....   +..++.|+.|
T Consensus        72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~-~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L  145 (414)
T KOG0531|consen   72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIEN-LLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKEL  145 (414)
T ss_pred             HhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hccc-chhhhhcchheeccccccccccc---hhhccchhhh
Confidence            45666666666655 22333556677777777777775 2221 15567777777777777765443   3345557777


Q ss_pred             ecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCc
Q 045270          233 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN  312 (440)
Q Consensus       233 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  312 (440)
                      ++.+|.++.++.+..++.|+.+++++|.+...-+. . .....+++.+.+.+|.+........+.               
T Consensus       146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~~~~~---------------  208 (414)
T KOG0531|consen  146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGLDLLK---------------  208 (414)
T ss_pred             eeccCcchhccCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccchHHHH---------------
Confidence            77777777777766677777777777766532221 0 012223555555555554443332222               


Q ss_pred             ccCCCCCccEEEccCCcccccCCccccccCC--CcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhcc
Q 045270          313 IHQLPNNLIYIDFSNNNFTSSIPADTGNFMP--RLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL  390 (440)
Q Consensus       313 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  390 (440)
                            .+..+++..|.+. .+.....  .+  .|+.+++.+|.+.. .+..+..++.+..|++.+|.+...........
T Consensus       209 ------~l~~~~l~~n~i~-~~~~l~~--~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~  278 (414)
T KOG0531|consen  209 ------KLVLLSLLDNKIS-KLEGLNE--LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEGLERLPK  278 (414)
T ss_pred             ------HHHHhhcccccce-eccCccc--chhHHHHHHhcccCcccc-ccccccccccccccchhhccccccccccccch
Confidence                  3333345555444 1111110  22  26667777776662 33455666677777777777766655555555


Q ss_pred             ccEEECCCCcccCC---chhh-hhcCCCCcEEECCCCcccccC
Q 045270          391 LQTLDLNGNRLQGT---VPKS-IANCKMLEVLNLGNNQFSDKF  429 (440)
Q Consensus       391 L~~L~l~~n~~~~~---~~~~-~~~l~~L~~L~l~~n~~~~~~  429 (440)
                      +..+...++.+...   .... ....+.++.+.+.+|+.....
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  279 LSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             HHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            66666666665522   1111 445667777777777665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.1e-09  Score=92.56  Aligned_cols=228  Identities=22%  Similarity=0.152  Sum_probs=140.7

Q ss_pred             CceEEEeeccceeecccCCCcccccc--CCCCeEEecCCccCCCccccchhc-CCCCcEEEcccCcccc-CCcccccccc
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSL--HYLRSLNLARTSFNGTQIPSKLAN-ISSLTYLNLSDAGFAG-HIPLQISSMA   96 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~-~~~~~~~~l~   96 (440)
                      +.=+.+|+.+-.+.   |.  ....+  +....+.+.........+.+.+.- -..|++|||+...++. .+-..++.|.
T Consensus       136 ~lW~~lDl~~r~i~---p~--~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~  210 (419)
T KOG2120|consen  136 SLWQTLDLTGRNIH---PD--VLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCS  210 (419)
T ss_pred             cceeeeccCCCccC---hh--HHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHH
Confidence            33456777665543   22  33333  233444443322222212333322 2469999999988762 3334467889


Q ss_pred             cCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccccc-cc
Q 045270           97 RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSV-FE  175 (440)
Q Consensus        97 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~-~~  175 (440)
                      +|+.|.|+++++.+.+. ..+.+..+|+.++++.|.........      +-...|+.|..|+++-|.+.......+ .+
T Consensus       211 kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h  283 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQ------LLLSSCSRLDELNLSWCFLFTEKVTVAVAH  283 (419)
T ss_pred             hhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHH------HHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence            99999999999885443 36888899999999988643222111      111677899999999887653222111 11


Q ss_pred             -ccCccEEecccccccccc-c-hhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC---CCCCCcccC
Q 045270          176 -LKKLTSLLLSSNNLHGTV-Q-LDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR---EIPNLKNQS  249 (440)
Q Consensus       176 -~~~L~~L~l~~~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~l~~~~~~~  249 (440)
                       -++|..|+++++.-.-.. . ....+.+++|..|+++.+..-.......+..++.|++|.++.|..-   .+-.+...|
T Consensus       284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~p  363 (419)
T KOG2120|consen  284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKP  363 (419)
T ss_pred             hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCc
Confidence             367888999887432111 1 1224678999999999886433333333667888999999999542   222378889


Q ss_pred             cccEEeccCcc
Q 045270          250 QLQYLYLSENQ  260 (440)
Q Consensus       250 ~L~~L~l~~~~  260 (440)
                      .|.+|++-|+-
T Consensus       364 sl~yLdv~g~v  374 (419)
T KOG2120|consen  364 SLVYLDVFGCV  374 (419)
T ss_pred             ceEEEEecccc
Confidence            99999998763

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=1.5e-08  Score=85.82  Aligned_cols=225  Identities=19%  Similarity=0.101  Sum_probs=145.4

Q ss_pred             EEeeccceeecccCCCccccccCCCCeEEecCCccCCCc-cccchhcCCCCcEEEcccCccccCCcccc-cccccCceec
Q 045270           25 GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQ-IPSKLANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALD  102 (440)
Q Consensus        25 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~  102 (440)
                      .+.+.++.+.........-..+++++.+|+.+|.+..-+ +...+..+|.|++|+++.|.+...+. .+ ....+|++|-
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lV  127 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLV  127 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEE
Confidence            444445544322221113346789999999999986422 44445689999999999998763322 22 3456899999


Q ss_pred             CCCCcccCccchhhhcccccceEEEecCCccCC--CCCccccccccccccCcccccEEEcCCCccCC--ccccccccccC
Q 045270          103 FSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG--SIPRSMFEFPIFSNASSSALDTLDLSGNRLRG--SIPVSVFELKK  178 (440)
Q Consensus       103 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~  178 (440)
                      |.++.+.-.-....+..+|.+++|.++.|.+.-  .-...+..       ..+.++++....|....  .....-.-+++
T Consensus       128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~-------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED-------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc-------cchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            988877644455567889999999999884321  11111111       12466677776664320  11111223688


Q ss_pred             ccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC-------CcccCc
Q 045270          179 LTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-------LKNQSQ  250 (440)
Q Consensus       179 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~-------~~~~~~  250 (440)
                      +..+.+..|.+........+..++.+..|+++.+++.+......+..++.|..|.+.++.+. .+..       +..+++
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~  280 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK  280 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence            88888888877644444445667778889999998877666555788899999999888764 2221       667788


Q ss_pred             ccEEecc
Q 045270          251 LQYLYLS  257 (440)
Q Consensus       251 L~~L~l~  257 (440)
                      ++.|+-+
T Consensus       281 v~vLNGs  287 (418)
T KOG2982|consen  281 VQVLNGS  287 (418)
T ss_pred             eEEecCc
Confidence            8887755

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.55  E-value=2.8e-09  Score=94.18  Aligned_cols=234  Identities=18%  Similarity=0.058  Sum_probs=115.6

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccch-hcCCCCcEEEcccCc-cccCCcc-ccccccc
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKL-ANISSLTYLNLSDAG-FAGHIPL-QISSMAR   97 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~-~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~   97 (440)
                      +.++.|.+.++.-.+..+--..-.+++++++|++.+|..........+ ..+++|++|++..|. ++...-. -...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            456777777766544333222355777777777777764322122223 457777777777743 3322111 1245677


Q ss_pred             CceecCCCCcc-cCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcc--ccccc
Q 045270           98 LVALDFSFNQF-SGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSI--PVSVF  174 (440)
Q Consensus        98 L~~L~L~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~--~~~~~  174 (440)
                      |++|++++|.- ++.........+..++.+.+++|.-.  ..+.+..+.    ..+..+..+++..|......  ...-.
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~----~~~~~i~~lnl~~c~~lTD~~~~~i~~  291 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAA----AYCLEILKLNLQHCNQLTDEDLWLIAC  291 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHh----ccChHhhccchhhhccccchHHHHHhh
Confidence            77777777742 22111123444555555555554321  111111111    33344555555554322111  01112


Q ss_pred             cccCccEEeccccccccccchhhH-hcCCCCcEEEcCCCc-ccccCCccccCCccccceeecCCCCCC---CCCC-Cccc
Q 045270          175 ELKKLTSLLLSSNNLHGTVQLDKI-LNLGNLAKLDLSYNS-LAVDESSRNYSFSPMLELLNLASCKLR---EIPN-LKNQ  248 (440)
Q Consensus       175 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~---~l~~-~~~~  248 (440)
                      .+..|+.+..+++...+......+ .++.+|+.+.+..++ ++.......-.+++.|+.+++.++...   .+.. -.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            356677777666654323333333 355677777777765 222222222345566777776666432   1222 4456


Q ss_pred             CcccEEeccCcc
Q 045270          249 SQLQYLYLSENQ  260 (440)
Q Consensus       249 ~~L~~L~l~~~~  260 (440)
                      +.|+++.++.|.
T Consensus       372 ~~lr~lslshce  383 (483)
T KOG4341|consen  372 PRLRVLSLSHCE  383 (483)
T ss_pred             chhccCChhhhh
Confidence            667777776554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.51  E-value=6e-09  Score=92.15  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=14.8

Q ss_pred             ccEEECCCCcccC-CchhhhhcCCCCcEEECCCC
Q 045270          391 LQTLDLNGNRLQG-TVPKSIANCKMLEVLNLGNN  423 (440)
Q Consensus       391 L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n  423 (440)
                      |+.+-+++++.+. ...+.+..+++|+.+++-+|
T Consensus       403 l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  403 LEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             cceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            4444444444332 22233444555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.48  E-value=1.4e-08  Score=95.68  Aligned_cols=213  Identities=27%  Similarity=0.271  Sum_probs=122.4

Q ss_pred             cCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCccccccccccee
Q 045270          200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLH  278 (440)
Q Consensus       200 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  278 (440)
                      .+..++.+.+..|.+...  ...+..+.+++.+++.+|.++.+.. +..+++|+.|++++|.|+...+-.    ....|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~--~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKI--LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhhh--hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchh
Confidence            445566666777766541  1125567788888888888888887 778888888888888876433322    122277


Q ss_pred             EEEccCcccccccCCccCCceeEEEcCCccccCccc---CCCCCccEEEccCCcccccCCccccccCCCcceEecccccc
Q 045270          279 CLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH---QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL  355 (440)
Q Consensus       279 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  355 (440)
                      .|++++|.+..+.....++.++.+++++|++...-.   ..+.+++.+.+.+|.+. .+...  .....+..+++..|.+
T Consensus       144 ~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~~--~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  144 ELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEGL--DLLKKLVLLSLLDNKI  220 (414)
T ss_pred             hheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccch--HHHHHHHHhhcccccc
Confidence            777888877777776667777777777776665444   44556666666666654 22111  1122333445555555


Q ss_pred             cccchhhhhccCC--CCEEEcCCCcCCCC-CchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcc
Q 045270          356 TGIIPASLCNATT--LSLLDLSNNSFMKK-SDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF  425 (440)
Q Consensus       356 ~~~~~~~~~~~~~--L~~L~l~~n~i~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  425 (440)
                      +...+  +.....  |+.+.+++|.+... ........++.|++..|.+....  .+...+.+..+....+.+
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKL  289 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchh
Confidence            43211  112222  56666666666655 23333444666666666555321  133334444555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=6.4e-09  Score=98.21  Aligned_cols=123  Identities=27%  Similarity=0.223  Sum_probs=68.1

Q ss_pred             eeEEEccCcccccccCC-ccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEeccccc
Q 045270          277 LHCLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNG  354 (440)
Q Consensus       277 L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  354 (440)
                      |...+.++|.+..+... .-++.++.|+++.|++.... ...++.|++|||+.|.+. .+|......+ +|..|.+.+|.
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~  243 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNA  243 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhh-hheeeeecccH
Confidence            55556666665544332 23566666677666655422 223556666666666665 5554332212 36666666666


Q ss_pred             ccccchhhhhccCCCCEEEcCCCcCCCC---CchhhhccccEEECCCCcccC
Q 045270          355 LTGIIPASLCNATTLSLLDLSNNSFMKK---SDAFLNCLLQTLDLNGNRLQG  403 (440)
Q Consensus       355 l~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~L~~L~l~~n~~~~  403 (440)
                      ++.  ...+.++.+|+.||++.|-+.+.   ...+....|+.|+|.||++-.
T Consensus       244 l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  244 LTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             HHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            653  23456666666666666665544   222223446666666666653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.35  E-value=4.5e-08  Score=81.85  Aligned_cols=197  Identities=19%  Similarity=0.114  Sum_probs=92.9

Q ss_pred             cccccCceecCCCCcccCccch---hhhcccccceEEEecCCccCCCCCcccc----ccccccc-cCcccccEEEcCCCc
Q 045270           93 SSMARLVALDFSFNQFSGSISS---IRWEHLLNLVYAVLSDNSLNGSIPRSMF----EFPIFSN-ASSSALDTLDLSGNR  164 (440)
Q Consensus        93 ~~l~~L~~L~L~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l~~l~~-~~~~~L~~L~l~~~~  164 (440)
                      .+||+|+..+|++|.+....+.   ..+.+.+.|++|.+++|.+.......++    .+..... +.-+.|+++....|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            4455555555555555433322   2344555666666666554432222222    1100000 223567777776666


Q ss_pred             cCCcccc-----ccccccCccEEeccccccccc----cchhhHhcCCCCcEEEcCCCcccccCCcc---ccCCcccccee
Q 045270          165 LRGSIPV-----SVFELKKLTSLLLSSNNLHGT----VQLDKILNLGNLAKLDLSYNSLAVDESSR---NYSFSPMLELL  232 (440)
Q Consensus       165 ~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L  232 (440)
                      +. ..+.     .+..-..|+.+.++.|.+...    .....+..+.+|+.|+++.|.++......   .+...+.|+.|
T Consensus       169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            54 1111     111224666777776665411    11122345567777777777665332211   13334456777


Q ss_pred             ecCCCCCCCCCC--------CcccCcccEEeccCcccccccCc-----ccccccccceeEEEccCcccccc
Q 045270          233 NLASCKLREIPN--------LKNQSQLQYLYLSENQISREIPN-----WIWRVSVVGLHCLNLSHNLLVGF  290 (440)
Q Consensus       233 ~l~~~~l~~l~~--------~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~  290 (440)
                      .+.+|-++.-..        -...|+|..|...+|.+.+....     .+..-..|-|..+.+.+|.+...
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            777775542111        12346667777766654332111     11222334455556666666544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.33  E-value=1.5e-08  Score=95.88  Aligned_cols=204  Identities=26%  Similarity=0.188  Sum_probs=127.8

Q ss_pred             CCCCcEEEcccCccccC-CcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCc--cCC---CCCcccccc
Q 045270           71 ISSLTYLNLSDAGFAGH-IPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNS--LNG---SIPRSMFEF  144 (440)
Q Consensus        71 l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~---~~~~~~~~l  144 (440)
                      +++++.|.+-.-.-.+- .|..|..+..||+|.+.+|.+.. ... ...--.+|++|...+.-  +..   .....+.+-
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~G-L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKG-LQELRHQLEKLICHNSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhh-hHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence            44555555443322221 26677888899999999988763 211 11112355555433210  000   001111111


Q ss_pred             ccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccC
Q 045270          145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYS  224 (440)
Q Consensus       145 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  224 (440)
                           .....|.+.+.++|.+. .+...+.-++.++.|+++.|+++ .+.  .+..+++|+.|++++|.+...+... -.
T Consensus       161 -----~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~-~~  230 (1096)
T KOG1859|consen  161 -----PVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLS-MV  230 (1096)
T ss_pred             -----hhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccc-hh
Confidence                 01136777888888876 56667777889999999999986 333  6889999999999999887555443 22


Q ss_pred             CccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccc
Q 045270          225 FSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLV  288 (440)
Q Consensus       225 ~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  288 (440)
                      .+ .|..|.+++|.++.+..+.++.+|+.||+++|.+.+.-.-.+ ......|+.|.+.+|.+-
T Consensus       231 gc-~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  231 GC-KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hh-hheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCccc
Confidence            23 389999999999988888899999999999998765322111 112233777888887663

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=1.3e-07  Score=79.19  Aligned_cols=167  Identities=21%  Similarity=0.169  Sum_probs=113.1

Q ss_pred             hhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccc-------------ccccccCccEE
Q 045270          116 RWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV-------------SVFELKKLTSL  182 (440)
Q Consensus       116 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L  182 (440)
                      ++..+++|+.++|++|-+....|..++.+-    +..+.|++|.+++|.+.-.-..             -...-|.|+.+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~i----s~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v  162 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLI----SSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV  162 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHH----hcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence            578899999999999999888888777665    5668999999999976521111             12245789999


Q ss_pred             eccccccccc---cchhhHhcCCCCcEEEcCCCcccccCCcc----ccCCccccceeecCCCCCCCCCC------CcccC
Q 045270          183 LLSSNNLHGT---VQLDKILNLGNLAKLDLSYNSLAVDESSR----NYSFSPMLELLNLASCKLREIPN------LKNQS  249 (440)
Q Consensus       183 ~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~l~~------~~~~~  249 (440)
                      ....|++...   .....+.....|+.+.+..|.|.......    .+..+.+|+.|++.+|-++...+      +...+
T Consensus       163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence            9888887521   12234455578899999999875432111    13456788999999987774433      66677


Q ss_pred             cccEEeccCcccccccCcccc----cccccceeEEEccCcc
Q 045270          250 QLQYLYLSENQISREIPNWIW----RVSVVGLHCLNLSHNL  286 (440)
Q Consensus       250 ~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~  286 (440)
                      .|+.|.+.+|-++......+.    ....|+|..|...+|.
T Consensus       243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence            788888888877655444432    2234455555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.24  E-value=9.5e-06  Score=73.97  Aligned_cols=56  Identities=14%  Similarity=0.191  Sum_probs=30.2

Q ss_pred             HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC-CCCCCCCCcccCcccEEeccCc
Q 045270          198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC-KLREIPNLKNQSQLQYLYLSEN  259 (440)
Q Consensus       198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~L~~L~l~~~  259 (440)
                      +..+.+++.|++++|.++..+     ...++|+.|.+.+| .++.+|.. -.++|+.|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCch-hhhhhhheEccCc
Confidence            334566777777776554433     12345666666664 34455431 1345666666655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.16  E-value=4.3e-06  Score=67.17  Aligned_cols=104  Identities=28%  Similarity=0.308  Sum_probs=81.5

Q ss_pred             ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL  232 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  232 (440)
                      .+...+++++|.+..  ...|.+++.|.+|.+.+|+++ .+.+..-.-+++|+.|.+.+|.+........+..+|.|++|
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            577888999888762  235778889999999999987 56555555667899999999988776666667788899999


Q ss_pred             ecCCCCCCCCCC-----CcccCcccEEeccCc
Q 045270          233 NLASCKLREIPN-----LKNQSQLQYLYLSEN  259 (440)
Q Consensus       233 ~l~~~~l~~l~~-----~~~~~~L~~L~l~~~  259 (440)
                      .+-+|.++.-+.     +..+|+|+.||+.+-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            999998876554     677889999998764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.10  E-value=7.8e-07  Score=87.81  Aligned_cols=34  Identities=26%  Similarity=0.278  Sum_probs=14.1

Q ss_pred             ccccCceecCCCCcccCccchhhhcccccceEEEecC
Q 045270           94 SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSD  130 (440)
Q Consensus        94 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~  130 (440)
                      ++|+|+.||++++.++ .+  ..++.+++|+.|.+.+
T Consensus       171 sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNIS-NL--SGISRLKNLQVLSMRN  204 (699)
T ss_pred             ccCccceeecCCCCcc-Cc--HHHhccccHHHHhccC
Confidence            3444444444444443 22  1244444444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=3.5e-07  Score=68.49  Aligned_cols=112  Identities=23%  Similarity=0.251  Sum_probs=76.1

Q ss_pred             CccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhh-ccccEEECC
Q 045270          319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLN-CLLQTLDLN  397 (440)
Q Consensus       319 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~~L~~L~l~  397 (440)
                      .|+..+|++|.+. ++|..+...+|.++.|++.+|.+. .+|+.+..++.|+.|++++|++...+..++. .++-.|+.-
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence            5677788888877 777777666778888888888888 4666688888888888888888877766664 446667777


Q ss_pred             CCcccCCchhhh-hcCCCCcEEECCCCcccccCccccc
Q 045270          398 GNRLQGTVPKSI-ANCKMLEVLNLGNNQFSDKFPCWLY  434 (440)
Q Consensus       398 ~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~  434 (440)
                      +|.......+.| ...+.|.  ++.++++.+.-+..++
T Consensus       132 ~na~~eid~dl~~s~~~al~--~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  132 ENARAEIDVDLFYSSLPALI--KLGNEPLGDETKKKLQ  167 (177)
T ss_pred             CCccccCcHHHhccccHHHH--HhcCCcccccCccccc
Confidence            777664333322 2233333  3466677666555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=1.9e-06  Score=85.14  Aligned_cols=140  Identities=21%  Similarity=0.193  Sum_probs=96.8

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .++++||+++...-........-..||.|+.|.+.+-.+...+......++++|..||++++++.. + ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence            578999998865432222222345789999999998887655344445678999999999999984 3 67899999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCC--CccccccccccccCcccccEEEcCCCccC
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSI--PRSMFEFPIFSNASSSALDTLDLSGNRLR  166 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~l~~~~~~~L~~L~l~~~~~~  166 (440)
                      |.+.+=.+.....-..+-.+++|+.||++........  ....-++.    ..++.|+.||.++..+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~----~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG----MVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc----ccCccccEEecCCcchh
Confidence            9999888775444456788899999999887654211  11111111    23566777777766554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=7.9e-06  Score=49.30  Aligned_cols=40  Identities=35%  Similarity=0.449  Sum_probs=27.7

Q ss_pred             CCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCC
Q 045270          343 PRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKS  383 (440)
Q Consensus       343 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~  383 (440)
                      ++|++|++++|++++ ++..+..+++|++|++++|+|++++
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence            467778888888774 4556778888888888888777653

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.96  E-value=8.3e-06  Score=49.20  Aligned_cols=36  Identities=31%  Similarity=0.494  Sum_probs=17.7

Q ss_pred             CCcEEEcccCccccCCcccccccccCceecCCCCccc
Q 045270           73 SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFS  109 (440)
Q Consensus        73 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~  109 (440)
                      +|++|++++|++. .+|..++++++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=3.6e-05  Score=70.31  Aligned_cols=156  Identities=19%  Similarity=0.263  Sum_probs=98.2

Q ss_pred             CccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCc-ccccccCCccCCceeEEE
Q 045270          225 FSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN-LLVGFQGPYSIPALRFID  303 (440)
Q Consensus       225 ~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~  303 (440)
                      .+..++.|++++|.++.+|.  -.++|+.|.+++|.-....|..+    ..+|++|.+++| .+..+     .++|+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGL-----PESVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccccc-----ccccceEE
Confidence            35789999999999999984  34579999998875434555433    246899999888 55443     34677777


Q ss_pred             cCCccccCcccCCCCCccEEEccCCc-cc-ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCC
Q 045270          304 LSSHQLRGNIHQLPNNLIYIDFSNNN-FT-SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK  381 (440)
Q Consensus       304 l~~~~~~~~~~~~~~~L~~L~L~~~~-~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~  381 (440)
                      +..+... .+..+|++|+.|.+.++. .. ..++.   ..+++|++|++.+|... ..|..+  ..+|+.|.++.+....
T Consensus       119 L~~n~~~-~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n~~~s  191 (426)
T PRK15386        119 IKGSATD-SIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHIEQKTT  191 (426)
T ss_pred             eCCCCCc-ccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcccc--cccCcEEEeccccccc
Confidence            7654433 345667788888875432 11 01111   11467888888888765 334333  2578888887653222


Q ss_pred             --CCchhhhccccEEECCCC
Q 045270          382 --KSDAFLNCLLQTLDLNGN  399 (440)
Q Consensus       382 --~~~~~~~~~L~~L~l~~n  399 (440)
                        ++...++.++ .|++.++
T Consensus       192 LeI~~~sLP~nl-~L~f~n~  210 (426)
T PRK15386        192 WNISFEGFPDGL-DIDLQNS  210 (426)
T ss_pred             ccCccccccccc-Eechhhh
Confidence              2333444556 6666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.90  E-value=1.7e-05  Score=63.82  Aligned_cols=110  Identities=21%  Similarity=0.297  Sum_probs=66.3

Q ss_pred             CCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccccc
Q 045270           71 ISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNA  150 (440)
Q Consensus        71 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~  150 (440)
                      ..+...+||++|.+. .++ .|..+++|.+|.+.+|+++ .+....-..+++|+.|.+.+|.+. .+ ..+..+     +
T Consensus        41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l-~dl~pL-----a  110 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-EL-GDLDPL-----A  110 (233)
T ss_pred             ccccceecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hh-hhcchh-----c
Confidence            345666677777665 222 4566667777777777766 444444455566777777777664 11 111112     4


Q ss_pred             CcccccEEEcCCCccCC---ccccccccccCccEEeccccccc
Q 045270          151 SSSALDTLDLSGNRLRG---SIPVSVFELKKLTSLLLSSNNLH  190 (440)
Q Consensus       151 ~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~  190 (440)
                      .|++|++|.+-+|++..   .-.-.+..+++|+.|++++....
T Consensus       111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            56777777777776652   22234566888999998876654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.77  E-value=2.4e-06  Score=64.09  Aligned_cols=91  Identities=20%  Similarity=0.235  Sum_probs=70.3

Q ss_pred             CceeEEEcCCccccCccc---CCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEE
Q 045270          297 PALRFIDLSSHQLRGNIH---QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLD  373 (440)
Q Consensus       297 ~~L~~L~l~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  373 (440)
                      ..|+..++++|.+.....   ..++.++.+++++|.+. ++|.++.. +|.|+.|++..|.+. ..|..+..+.++-.|+
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            344555555555543332   23567888889999988 89998666 999999999999998 6788888899999999


Q ss_pred             cCCCcCCCCCchhhhcc
Q 045270          374 LSNNSFMKKSDAFLNCL  390 (440)
Q Consensus       374 l~~n~i~~~~~~~~~~~  390 (440)
                      ..+|.+..++...+.+.
T Consensus       130 s~~na~~eid~dl~~s~  146 (177)
T KOG4579|consen  130 SPENARAEIDVDLFYSS  146 (177)
T ss_pred             CCCCccccCcHHHhccc
Confidence            99999998877766544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.43  E-value=0.00034  Score=54.20  Aligned_cols=116  Identities=22%  Similarity=0.285  Sum_probs=50.2

Q ss_pred             CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEE
Q 045270          318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLD  395 (440)
Q Consensus       318 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~  395 (440)
                      .+|+.+.+.. .+. .++...+..++.|+.+.+.++ +.......|..+++++.+.+.+ .+..++...+  ...|+.++
T Consensus        12 ~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            3455555543 233 455555555666777777664 5445555666676677777754 4444433222  34477777


Q ss_pred             CCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270          396 LNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       396 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  440 (440)
                      +..+ +.......|.++ +|+.+.+.. .+.......|.+|++||
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            7554 444445567776 777777765 44445556677777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.28  E-value=0.00097  Score=51.64  Aligned_cols=60  Identities=15%  Similarity=0.260  Sum_probs=21.4

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCC
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS  104 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~  104 (440)
                      .|..+++|+.+.+.. .+... ...+|..+++|+.+.+.++ +......+|.+++.|+++.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            455555555555542 22211 2233444555555555443 332223334444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=0.00023  Score=60.00  Aligned_cols=38  Identities=24%  Similarity=0.239  Sum_probs=16.9

Q ss_pred             ccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCcc
Q 045270          121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL  165 (440)
Q Consensus       121 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~  165 (440)
                      ++|+++++++|++..  ++.+..+     ..+.+|..|++.+|..
T Consensus        91 P~l~~l~ls~Nki~~--lstl~pl-----~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKD--LSTLRPL-----KELENLKSLDLFNCSV  128 (260)
T ss_pred             CceeEEeecCCcccc--ccccchh-----hhhcchhhhhcccCCc
Confidence            555555555554431  3333322     2224455555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=7.5e-05  Score=63.27  Aligned_cols=97  Identities=22%  Similarity=0.179  Sum_probs=67.6

Q ss_pred             CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh---hccccEE
Q 045270          318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL---NCLLQTL  394 (440)
Q Consensus       318 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~~L~~L  394 (440)
                      .+.+.|+.-||.+. +  ..+...||.|+.|.++-|+++..  ..+..|++|++|.|..|.|.++.....   .++|+.|
T Consensus        19 ~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            46778888888776 3  34455588888888888888743  347788888888888888877744444   4557888


Q ss_pred             ECCCCcccCCch-----hhhhcCCCCcEEE
Q 045270          395 DLNGNRLQGTVP-----KSIANCKMLEVLN  419 (440)
Q Consensus       395 ~l~~n~~~~~~~-----~~~~~l~~L~~L~  419 (440)
                      .|..|+..+..+     ..+.-+|+|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            887777665443     2355677777764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.04  E-value=8.9e-05  Score=71.98  Aligned_cols=114  Identities=25%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             ccCCCCeEEecCCccC-CCccccchhcCCCCcEEEcccC-ccccCC----cccccccccCceecCCCCc-ccCccchhhh
Q 045270           45 SLHYLRSLNLARTSFN-GTQIPSKLANISSLTYLNLSDA-GFAGHI----PLQISSMARLVALDFSFNQ-FSGSISSIRW  117 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~-~~~l~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~  117 (440)
                      .++.|+.+.+..+... ...+-.....+++|+.|+++++ ......    ......+++|+.|+++++. +++..-....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            3566666666655332 2112233445666777776652 111011    1122345666666666666 3322222222


Q ss_pred             cccccceEEEecCCc-cCCCCCccccccccccccCcccccEEEcCCCcc
Q 045270          118 EHLLNLVYAVLSDNS-LNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL  165 (440)
Q Consensus       118 ~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~  165 (440)
                      ..+++|+.|.+..|. +++..-..+.       ..++.|++|+++++..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~-------~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIA-------ERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHH-------HhcCcccEEeeecCcc
Confidence            335666766666555 3322222222       3445666776666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=5.5e-05  Score=64.05  Aligned_cols=85  Identities=20%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             CcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCch-hhhhcCCCCcEEECCC
Q 045270          344 RLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVP-KSIANCKMLEVLNLGN  422 (440)
Q Consensus       344 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~  422 (440)
                      +.+.|+..+|.+.++  .....++.|+.|.|+-|+|++.........|++|+|..|.|.+.-. +.+.++|+|+.|+|..
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            455666666666643  2234566777777777777766555555557777777777664432 3456677777777777


Q ss_pred             CcccccCc
Q 045270          423 NQFSDKFP  430 (440)
Q Consensus       423 n~~~~~~~  430 (440)
                      |+=.+..+
T Consensus        98 NPCc~~ag  105 (388)
T KOG2123|consen   98 NPCCGEAG  105 (388)
T ss_pred             CCcccccc
Confidence            66555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.80  E-value=0.00016  Score=70.25  Aligned_cols=14  Identities=21%  Similarity=0.311  Sum_probs=8.1

Q ss_pred             cCCCcceEeccccc
Q 045270          341 FMPRLRYFCAANNG  354 (440)
Q Consensus       341 ~~~~L~~L~l~~~~  354 (440)
                      .++.++.+.+..+.
T Consensus       360 ~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  360 SCPKLTDLSLSYCG  373 (482)
T ss_pred             cCCCcchhhhhhhh
Confidence            35566666665555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.72  E-value=0.00091  Score=56.48  Aligned_cols=103  Identities=24%  Similarity=0.263  Sum_probs=60.4

Q ss_pred             ccccEEEcCCCccCCccccccccccCccEEeccccc--cccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccc
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNN--LHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLE  230 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  230 (440)
                      ..|+.+.+.+..++ + ...+..+++|++|.++.|.  +.+.... ....+++|+++++++|.+........+..+++|.
T Consensus        43 ~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   43 VELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cchhhhhhhcccee-e-cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            34555555555444 1 1234556777777777773  3322221 1234577777777777776433333355666777


Q ss_pred             eeecCCCCCCCCCC-----CcccCcccEEeccC
Q 045270          231 LLNLASCKLREIPN-----LKNQSQLQYLYLSE  258 (440)
Q Consensus       231 ~L~l~~~~l~~l~~-----~~~~~~L~~L~l~~  258 (440)
                      .|++.+|..+.+..     |.-+++|+.|+-..
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            78888877766544     66677777776544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.43  E-value=0.0012  Score=32.93  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=13.3

Q ss_pred             CCcEEECCCCcccccCcccccCC
Q 045270          414 MLEVLNLGNNQFSDKFPCWLYDA  436 (440)
Q Consensus       414 ~L~~L~l~~n~~~~~~~~~l~~~  436 (440)
                      +|++|++++|+++ .+|+.|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            3667777777666 556555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.08  E-value=0.0071  Score=49.19  Aligned_cols=81  Identities=21%  Similarity=0.185  Sum_probs=53.9

Q ss_pred             CcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-Cc---hhhhccccEEECCCC-cccCCchhhhhcCCCCcEE
Q 045270          344 RLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SD---AFLNCLLQTLDLNGN-RLQGTVPKSIANCKMLEVL  418 (440)
Q Consensus       344 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~---~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L  418 (440)
                      .++.++-+++.+..+--+.+.+++.++.|.+.+|+--+. .-   ....++|+.|+|++| .|++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456777777777666666677777778887777754322 11   113566888888877 4666666777888888887


Q ss_pred             ECCCCc
Q 045270          419 NLGNNQ  424 (440)
Q Consensus       419 ~l~~n~  424 (440)
                      .+.+=+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            776543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.82  E-value=0.014  Score=34.98  Aligned_cols=18  Identities=56%  Similarity=1.350  Sum_probs=12.4

Q ss_pred             CCCCCC--CCCcceeeeeeC
Q 045270            1 MQWRQS--TDCCDWSGVDCD   18 (440)
Q Consensus         1 ~~w~~~--~~~~~~~~~~~~   18 (440)
                      .+|+..  .++|.|.||+|+
T Consensus        24 ~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   24 SSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             TT--TT--S-CCCSTTEEE-
T ss_pred             ccCCCcCCCCCeeeccEEeC
Confidence            479986  899999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.64  E-value=0.014  Score=29.06  Aligned_cols=12  Identities=42%  Similarity=0.747  Sum_probs=5.3

Q ss_pred             CcEEEcccCccc
Q 045270           74 LTYLNLSDAGFA   85 (440)
Q Consensus        74 L~~L~l~~~~~~   85 (440)
                      |++|++++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.28  E-value=0.0097  Score=48.42  Aligned_cols=83  Identities=22%  Similarity=0.146  Sum_probs=53.2

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhc-CCCCcEEEcccC-ccccCCcccccccccC
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLAN-ISSLTYLNLSDA-GFAGHIPLQISSMARL   98 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~-l~~L~~L~l~~~-~~~~~~~~~~~~l~~L   98 (440)
                      ..|..+|-++..+..+..+  -+..++.++.|.+.+|+.....-.+.+++ .++|+.|++++| +|++..-..+.++++|
T Consensus       101 ~~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             ceEEEEecCCchHHHHHHH--HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            4577788888877765554  56777777778887777654322233332 477888888766 3554444455666777


Q ss_pred             ceecCCC
Q 045270           99 VALDFSF  105 (440)
Q Consensus        99 ~~L~L~~  105 (440)
                      +.|.+.+
T Consensus       179 r~L~l~~  185 (221)
T KOG3864|consen  179 RRLHLYD  185 (221)
T ss_pred             HHHHhcC
Confidence            7776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.01  E-value=0.037  Score=25.47  Aligned_cols=11  Identities=64%  Similarity=0.812  Sum_probs=3.5

Q ss_pred             CCEEEcCCCcC
Q 045270          369 LSLLDLSNNSF  379 (440)
Q Consensus       369 L~~L~l~~n~i  379 (440)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.20  E-value=0.019  Score=29.24  Aligned_cols=21  Identities=43%  Similarity=0.472  Sum_probs=11.1

Q ss_pred             CCCcEEECCCCcccccCcccc
Q 045270          413 KMLEVLNLGNNQFSDKFPCWL  433 (440)
Q Consensus       413 ~~L~~L~l~~n~~~~~~~~~l  433 (440)
                      ++|+.|++++|.+++.....|
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            556666666666665554443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.12  E-value=0.0062  Score=50.63  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .+++.||++.++......   .|+.++.|..|+++.+.+.  .+|..++....++.+++..|... ..|.++...+++++
T Consensus        42 kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            456666666665543111   3555555566666555442  24555555555666666555554 55666666666666


Q ss_pred             ecCCCCcc
Q 045270          101 LDFSFNQF  108 (440)
Q Consensus       101 L~L~~~~~  108 (440)
                      +++-.+.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            66655543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.40  E-value=0.0026  Score=60.54  Aligned_cols=85  Identities=26%  Similarity=0.340  Sum_probs=40.9

Q ss_pred             CCcceEeccccccccc----chhhhhccCC-CCEEEcCCCcCCCCCchh-----h-h-ccccEEECCCCcccCCch----
Q 045270          343 PRLRYFCAANNGLTGI----IPASLCNATT-LSLLDLSNNSFMKKSDAF-----L-N-CLLQTLDLNGNRLQGTVP----  406 (440)
Q Consensus       343 ~~L~~L~l~~~~l~~~----~~~~~~~~~~-L~~L~l~~n~i~~~~~~~-----~-~-~~L~~L~l~~n~~~~~~~----  406 (440)
                      ..+++|.+++|.++..    ....+...++ +..|+++.|++.+.....     . . +.+++++++.|++++...    
T Consensus       204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~  283 (478)
T KOG4308|consen  204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA  283 (478)
T ss_pred             ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence            3455555655555421    1222333344 455666666555431111     1 1 235666666666664433    


Q ss_pred             hhhhcCCCCcEEECCCCcccc
Q 045270          407 KSIANCKMLEVLNLGNNQFSD  427 (440)
Q Consensus       407 ~~~~~l~~L~~L~l~~n~~~~  427 (440)
                      +.+..++.++.+.+++|++.+
T Consensus       284 ~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  284 EVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHhhhHHHHHhhcccCcccc
Confidence            233445566666666665543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.20  E-value=0.24  Score=25.65  Aligned_cols=18  Identities=39%  Similarity=0.420  Sum_probs=9.1

Q ss_pred             CCCCEEEcCCCcCCCCCc
Q 045270          367 TTLSLLDLSNNSFMKKSD  384 (440)
Q Consensus       367 ~~L~~L~l~~n~i~~~~~  384 (440)
                      ++|+.|++++|+|..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.20  E-value=0.24  Score=25.65  Aligned_cols=18  Identities=39%  Similarity=0.420  Sum_probs=9.1

Q ss_pred             CCCCEEEcCCCcCCCCCc
Q 045270          367 TTLSLLDLSNNSFMKKSD  384 (440)
Q Consensus       367 ~~L~~L~l~~n~i~~~~~  384 (440)
                      ++|+.|++++|+|..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.35  E-value=0.021  Score=47.54  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=59.0

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL  121 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~  121 (440)
                      .+..+...+.||++.++...  +...|.-++.|..|+++.+++. ..|..+.....++++++.+|..+..+.  .++..+
T Consensus        37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~--s~~k~~  111 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPK--SQKKEP  111 (326)
T ss_pred             hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCc--cccccC
Confidence            57777777888887776643  4455666777777788777776 677777777777777777776652222  256666


Q ss_pred             cceEEEecCCccC
Q 045270          122 NLVYAVLSDNSLN  134 (440)
Q Consensus       122 ~L~~L~l~~~~~~  134 (440)
                      .++++++.++.+.
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            6666666665543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=81.55  E-value=0.018  Score=55.04  Aligned_cols=166  Identities=22%  Similarity=0.191  Sum_probs=102.8

Q ss_pred             CceEEEeeccceeecccCC--Ccccccc-CCCCeEEecCCccCCCc---cccchhcCCCCcEEEcccCccc----cCCcc
Q 045270           21 GHVIGLDLSTESISGGIEN--AASLFSL-HYLRSLNLARTSFNGTQ---IPSKLANISSLTYLNLSDAGFA----GHIPL   90 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~--~~~~~~l-~~L~~L~l~~~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~----~~~~~   90 (440)
                      .++..|++++|.+.+....  ...+... ..+++|++..|.+....   +.+.+....+++.++++.|.+.    -.++.
T Consensus       115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~  194 (478)
T KOG4308|consen  115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ  194 (478)
T ss_pred             ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence            5677888888877632211  0122232 56677777777765432   4555666788888888888763    12333


Q ss_pred             ccc----ccccCceecCCCCcccCcc---chhhhccccc-ceEEEecCCccCCCCCccccccccccccCc-ccccEEEcC
Q 045270           91 QIS----SMARLVALDFSFNQFSGSI---SSIRWEHLLN-LVYAVLSDNSLNGSIPRSMFEFPIFSNASS-SALDTLDLS  161 (440)
Q Consensus        91 ~~~----~l~~L~~L~L~~~~~~~~~---~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~-~~L~~L~l~  161 (440)
                      .+.    ....+++|.+++|.++...   ...++...+. +.++++..|.+.+.....+...-    ... ..+++++++
T Consensus       195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l----~~~~~~l~~l~l~  270 (478)
T KOG4308|consen  195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCL----SVLSETLRVLDLS  270 (478)
T ss_pred             hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHh----cccchhhhhhhhh
Confidence            333    4668899999998876322   2224455555 66788888887644222221111    112 467889999


Q ss_pred             CCccCCc----cccccccccCccEEeccccccc
Q 045270          162 GNRLRGS----IPVSVFELKKLTSLLLSSNNLH  190 (440)
Q Consensus       162 ~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  190 (440)
                      .|.+...    +...+..++.++.+.+..|.+.
T Consensus       271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            9988732    3445566788999999988875

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.29  E-value=1.6  Score=22.65  Aligned_cols=16  Identities=50%  Similarity=0.513  Sum_probs=9.2

Q ss_pred             CCCCEEEcCCCcCCCC
Q 045270          367 TTLSLLDLSNNSFMKK  382 (440)
Q Consensus       367 ~~L~~L~l~~n~i~~~  382 (440)
                      ++|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4556666666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	440
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-16
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-07

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 199/501 (39%), Gaps = 101/501 (20%)
Query: 2   QWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG-----------------------IE 38
            W  + + C + GV C +   V  +DLS++ ++ G                       I 
Sbjct: 32  DWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 90
Query: 39  NAASLFSLHY-LRSLNLARTSFNG-TQIPSKLANISSLTYLNLSD--AGFAGHIPLQISS 94
            + S F     L SL+L+R S +G     + L + S L +LN+S     F G +   +  
Sbjct: 91  GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK- 149
Query: 95  MARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXX 154
           +  L  LD S N  SG+          N+V  VLSD    G +                 
Sbjct: 150 LNSLEVLDLSANSISGA----------NVVGWVLSDGC--GELKH--------------- 182
Query: 155 XXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSL 214
                  GN++ G + VS                 + +  +  + +   L  LD+S N L
Sbjct: 183 ---LAISGNKISGDVDVS----RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Query: 215 AVDESSRNYSFSPMLELLNLASCK-LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS 273
           + D  SR  S    L+LLN++S + +  IP L  +S LQYL L+EN+ + EIP+++    
Sbjct: 236 SGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGAC 293
Query: 274 VVGLHCLNLSHNLLVGFQGPY---------------------------SIPALRFIDLSS 306
              L  L+LS N   G   P+                            +  L+ +DLS 
Sbjct: 294 DT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 307 HQLRGNIHQ----LPNNLIYIDFSNNNFTSSI-PADTGNFMPRLRYFCAANNGLTGIIPA 361
           ++  G + +    L  +L+ +D S+NNF+  I P    N    L+     NNG TG IP 
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 362 SLCNATTXXXXXXXXXXFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
           +L N +                 + L  L  L+ L L  N L+G +P+ +   K LE L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 420 LGNNQFSDKFPCWLYDAPSLH 440
           L  N  + + P  L +  +L+
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLN 493

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 199/501 (39%), Gaps = 101/501 (20%)
Query: 2   QWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG-----------------------IE 38
            W  + + C + GV C +   V  +DLS++ ++ G                       I 
Sbjct: 29  DWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 87
Query: 39  NAASLFSLHY-LRSLNLARTSFNG-TQIPSKLANISSLTYLNLSD--AGFAGHIPLQISS 94
            + S F     L SL+L+R S +G     + L + S L +LN+S     F G +   +  
Sbjct: 88  GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK- 146
Query: 95  MARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXX 154
           +  L  LD S N  SG+          N+V  VLSD    G +                 
Sbjct: 147 LNSLEVLDLSANSISGA----------NVVGWVLSDGC--GELKH--------------- 179
Query: 155 XXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSL 214
                  GN++ G + VS                 + +  +  + +   L  LD+S N L
Sbjct: 180 ---LAISGNKISGDVDVS----RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 232
Query: 215 AVDESSRNYSFSPMLELLNLASCK-LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS 273
           + D  SR  S    L+LLN++S + +  IP L  +S LQYL L+EN+ + EIP+++    
Sbjct: 233 SGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGAC 290
Query: 274 VVGLHCLNLSHNLLVGFQGPY---------------------------SIPALRFIDLSS 306
              L  L+LS N   G   P+                            +  L+ +DLS 
Sbjct: 291 DT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 307 HQLRGNIHQ----LPNNLIYIDFSNNNFTSSI-PADTGNFMPRLRYFCAANNGLTGIIPA 361
           ++  G + +    L  +L+ +D S+NNF+  I P    N    L+     NNG TG IP 
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 362 SLCNATTXXXXXXXXXXFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
           +L N +                 + L  L  L+ L L  N L+G +P+ +   K LE L 
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 420 LGNNQFSDKFPCWLYDAPSLH 440
           L  N  + + P  L +  +L+
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLN 490

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 121/293 (41%), Gaps = 43/293 (14%)
Query: 3   WRQSTDCCD--WSGVDCD---EAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLART 57
           W  +TDCC+  W GV CD   +   V  LDLS  ++       +SL +L YL  L +   
Sbjct: 27  WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86
Query: 58  SFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRW 117
           +     IP  +A ++ L YL ++    +G IP  +S +  LV LDFS+N  SG++     
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SI 145
Query: 118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXX 177
             L NLV      N ++G+IP S   F                  NRL G IP +     
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSF-------SKLFTSMTISRNRLTGKIPPTFANL- 197
Query: 178 XXXXXXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 237
                                    NLA +DLS N L  D S   +      + ++LA  
Sbjct: 198 -------------------------NLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKN 231
Query: 238 KLR-EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG 289
            L  ++  +     L  L L  N+I   +P  + ++    LH LN+S N L G
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCG 282

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 45/212 (21%)
Query: 243 PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFI 302
           P +   +QL YLY++   +S  IP+++ ++    L  L+ S+N L G   P         
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT--LVTLDFSYNALSGTLPP--------- 143
Query: 303 DLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS 362
                    +I  LPN L+ I F  N  + +IP   G+F         + N LTG IP +
Sbjct: 144 ---------SISSLPN-LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 363 LCNATTX------------------XXXXXXXXXFMKKSDAF------LNCLLQTLDLNG 398
             N                                 K S AF      L+  L  LDL  
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253
Query: 399 NRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
           NR+ GT+P+ +   K L  LN+  N    + P
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-60
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  245 bits (628), Expect = 6e-74
 Identities = 121/498 (24%), Positives = 183/498 (36%), Gaps = 99/498 (19%)

Query: 3   WRQSTDCCDWSGVDCDEAGHVIG------------------------------------- 25
           W  + + C + GV C     V                                       
Sbjct: 33  WSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING 91

Query: 26  -------------LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANIS 72
                        LDLS  S+SG +    SL S   L+ LN++  + +     S    ++
Sbjct: 92  SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 73  SLTYLNLSDAGFAGHIPLQI---SSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLS 129
           SL  L+LS    +G   +          L  L  S N+ SG +        +NL +  +S
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVS 208

Query: 130 DNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNL 189
            N+ +  IP              SAL  LD+SGN+L G    ++    +L  L +SSN  
Sbjct: 209 SNNFSTGIP---------FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 190 HGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKN 247
            G +       L +L  L L+ N    +           L  L+L+       +P    +
Sbjct: 260 VGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 248 QSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSH 307
            S L+ L LS N  S E+P       + GL  L+LS N   G      +P          
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNEFSG-----ELPE--------- 361

Query: 308 QLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNF-MPRLRYFCAANNGLTGIIPASLCNA 366
               ++  L  +L+ +D S+NNF+  I  +        L+     NNG TG IP +L N 
Sbjct: 362 ----SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 367 TTLSLLDLSNNSFMKKSDAFLNCL-----LQTLDLNGNRLQGTVPKSIANCKMLEVLNLG 421
           + L  L LS N     S    + L     L+ L L  N L+G +P+ +   K LE L L 
Sbjct: 418 SELVSLHLSFNYL---SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 422 NNQFSDKFPCWLYDAPSL 439
            N  + + P  L +  +L
Sbjct: 475 FNDLTGEIPSGLSNCTNL 492

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  244 bits (625), Expect = 2e-73
 Identities = 117/417 (28%), Positives = 176/417 (42%), Gaps = 50/417 (11%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L +S   ISG +     +     L  L+++  +F+   IP  L + S+L +L++S    +
Sbjct: 183 LAISGNKISGDV----DVSRCVNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLS 236

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
           G     IS+   L  L+ S NQF G I       L +L Y  L++N   G IP  +    
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLS--- 290

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
                +   L  LDLSGN   G++P        L SL LSSNN  G + +D +L +  L 
Sbjct: 291 ----GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN---LKNQSQLQYLYLSENQI 261
            LDLS+N  + +      + S  L  L+L+S      I        ++ LQ LYL  N  
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 262 SREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLI 321
           + +IP  +   S   L  L+LS N L G     +IP+             ++  L   L 
Sbjct: 407 TGKIPPTLSNCS--ELVSLHLSFNYLSG-----TIPS-------------SLGSLSK-LR 445

Query: 322 YIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK 381
            +    N     IP +    +  L       N LTG IP+ L N T L+ + LSNN    
Sbjct: 446 DLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL-- 502

Query: 382 KSDAFLNCL-----LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWL 433
            +      +     L  L L+ N   G +P  + +C+ L  L+L  N F+   P  +
Sbjct: 503 -TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  216 bits (553), Expect = 3e-63
 Identities = 116/420 (27%), Positives = 178/420 (42%), Gaps = 35/420 (8%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L L+    +G I       +   L  L+L+   F G  +P    + S L  L LS   F+
Sbjct: 274 LSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFS 331

Query: 86  GHIPLQ-ISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF 144
           G +P+  +  M  L  LD SFN+FSG +         +L+   LS N+ +G I  ++   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC-- 389

Query: 145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL 204
                   + L  L L  N   G IP ++    +L SL LS N L GT+    + +L  L
Sbjct: 390 ----QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKL 444

Query: 205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQIS 262
             L L  N L   E  +   +   LE L L    L  EIP+ L N + L ++ LS N+++
Sbjct: 445 RDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 263 REIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA-------LRFIDLSSHQLRGNIHQ 315
            EIP WI R+    L  L LS+N   G     +IPA       L ++DL+++   G I  
Sbjct: 504 GEIPKWIGRLE--NLAILKLSNNSFSG-----NIPAELGDCRSLIWLDLNTNLFNGTI-- 554

Query: 316 LPNNLIYI--DFSNNNFTSSIPADTGNFMPRLRYFCAAN-NGLTGIIPASLCNATTLSLL 372
            P  +       + N           N   +     A N     GI    L   +T +  
Sbjct: 555 -PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 373 DLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
           ++++  +   +    +    +  LD++ N L G +PK I +   L +LNLG+N  S   P
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  208 bits (531), Expect = 3e-60
 Identities = 108/433 (24%), Positives = 174/433 (40%), Gaps = 44/433 (10%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LDLS     G +       S   L SL L+  +F+G      L  +  L  L+LS   F+
Sbjct: 299 LDLSGNHFYGAVPP--FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 86  GHIPLQISSM-ARLVALDFSFNQFSGSI-SSIRWEHLLNLVYAVLSDNSLNGSIPRSMFE 143
           G +P  ++++ A L+ LD S N FSG I  ++       L    L +N   G IP +   
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT--- 413

Query: 144 FPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN 203
               SN S   L +L LS N L G+IP S+  L KL  L L  N L G +   +++ +  
Sbjct: 414 ---LSNCSE--LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-PQELMYVKT 467

Query: 204 LAKLDLSYNSL--AVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSEN 259
           L  L L +N L   +     N +    L  ++L++ +L  EIP  +     L  L LS N
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCT---NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 260 QISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA---LRFIDLSSHQLRGNIHQL 316
             S  IP  +       L  L+L+ NL  G     +IPA    +   ++++ + G  +  
Sbjct: 525 SFSGNIPAELGDCR--SLIWLDLNTNLFNG-----TIPAAMFKQSGKIAANFIAGKRYVY 577

Query: 317 PNNL-----IYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSL 371
             N       +   +   F                     +    G    +  N  ++  
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRL-STRNPCNITSRVYGGHTSPTFDNNGSMMF 636

Query: 372 LDLSNNSFMKKS----DAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
           LD+S N     S        +   L  L+L  N + G++P  + + + L +L+L +N+  
Sbjct: 637 LDMSYNML---SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 427 DKFPCWLYDAPSL 439
            + P  +     L
Sbjct: 694 GRIPQAMSALTML 706

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  196 bits (500), Expect = 7e-56
 Identities = 106/410 (25%), Positives = 158/410 (38%), Gaps = 41/410 (10%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNLSDAGF 84
           L++S+    G I        L  L+ L+LA   F G  IP  L+    +LT L+LS   F
Sbjct: 252 LNISSNQFVGPI----PPLPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHF 306

Query: 85  AGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF 144
            G +P    S + L +L  S N FSG +       +  L    LS N  +G +P S    
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES---- 362

Query: 145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFE--LKKLTSLLLSSNNLHGTVQLDKILNLG 202
              +N S+S L TLDLS N   G I  ++ +     L  L L +N   G +    + N  
Sbjct: 363 --LTNLSAS-LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCS 418

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIP-NLKNQSQLQYLYLSENQ 260
            L  L LS+N L       +      L  L L    L  EIP  L     L+ L L  N 
Sbjct: 419 ELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNL 320
           ++ EIP+ +   +   L+ ++LS+N L G      IP               I +L N L
Sbjct: 478 LTGEIPSGLSNCT--NLNWISLSNNRLTG-----EIPK-------------WIGRLEN-L 516

Query: 321 IYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFM 380
             +  SNN+F+ +IPA+ G+    L +     N   G IPA++   +     +       
Sbjct: 517 AILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575

Query: 381 KKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
                           N    QG   + +         N+ +  +     
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  187 bits (478), Expect = 8e-53
 Identities = 104/419 (24%), Positives = 173/419 (41%), Gaps = 42/419 (10%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANIS-SLTYLNLSDAGF 84
           L LS+ + SG +    +L  +  L+ L+L+   F+G  +P  L N+S SL  L+LS   F
Sbjct: 323 LALSSNNFSGEL-PMDTLLKMRGLKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSNNF 380

Query: 85  AGHIPLQI--SSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMF 142
           +G I   +  +    L  L    N F+G I      +   LV   LS N L+G+IP S+ 
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 143 EFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLG 202
                     S L  L L  N L G IP  +  +K L +L+L  N+L G +    + N  
Sbjct: 440 SL--------SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCT 490

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQ 260
           NL  + LS N L   E  +       L +L L++      IP  L +   L +L L+ N 
Sbjct: 491 NLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNN- 319
            +  IP  +++ S  G    N        +     +        +  + +G   +  N  
Sbjct: 550 FNGTIPAAMFKQS--GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

Query: 320 --LIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN 377
                 + ++  +         N    + +   + N L+G IP  + +   L +L+L +N
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666

Query: 378 SF----------MKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
                       ++         L  LDL+ N+L G +P++++   ML  ++L NN  S
Sbjct: 667 DISGSIPDEVGDLRG--------LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  172 bits (438), Expect = 3e-47
 Identities = 96/391 (24%), Positives = 162/391 (41%), Gaps = 48/391 (12%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LDLS+ + SG I         + L+ L L    F G  IP  L+N S L  L+LS    +
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLS 431

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
           G IP  + S+++L  L    N   G I      ++  L   +L  N L G IP  +    
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGL---- 486

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
               ++ + L+ + LS NRL G IP  +  L+ L  L LS+N+  G +   ++ +  +L 
Sbjct: 487 ----SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP-AELGDCRSLI 541

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISRE 264
            LDL+ N                             IP  +  QS      ++ N I+ +
Sbjct: 542 WLDLNTNLFN------------------------GTIPAAMFKQSGK----IAANFIAGK 573

Query: 265 IPNWIWRVSVVGLHCLNLSHNLLVGFQGPY--SIPALRFIDLSSHQLRGNIHQLPNNL-- 320
              +I    +        +     G +      +      +++S    G+     +N   
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 321 -IYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF 379
            +++D S N  +  IP + G+ MP L      +N ++G IP  + +   L++LDLS+N  
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

Query: 380 MKKSDAFLNCL--LQTLDLNGNRLQGTVPKS 408
             +    ++ L  L  +DL+ N L G +P+ 
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 14/150 (9%)

Query: 22  HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD 81
                  +     G    +  L  L      N+    + G        N  S+ +L++S 
Sbjct: 585 KECHGAGNLLEFQGIR--SEQLNRLSTRNPCNITSRVYGG-HTSPTFDNNGSMMFLDMSY 641

Query: 82  AGFAGHIPLQISSMARLVALDFSFNQFSGSI-SSIRWEHLLNLVYAVLSDNSLNGSIPRS 140
              +G+IP +I SM  L  L+   N  SGSI   +    L  L    LS N L+G IP++
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV--GDLRGLNILDLSSNKLDGRIPQA 699

Query: 141 MFEFPIFSNASSSALDTLDLSGNRLRGSIP 170
           M        ++ + L  +DLS N L G IP
Sbjct: 700 M--------SALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 5e-15
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
            ++++    G      +  +   +  L+++    +G  IP ++ ++  L  LNL     +
Sbjct: 613 CNITSRVYGGHTS--PTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDIS 669

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSI-SSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF 144
           G IP ++  +  L  LD S N+  G I  ++    L  L    LS+N+L+G IP      
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEIDLSNNNLSGPIPEM---- 723

Query: 145 PIFSNASSSAL 155
             F     +  
Sbjct: 724 GQFETFPPAKF 734

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 8e-12
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 21  GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLS 80
           G ++ LD+S   +SG I     + S+ YL  LNL     +G  IP ++ ++  L  L+LS
Sbjct: 632 GSMMFLDMSYNMLSGYI--PKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLS 688

Query: 81  DAGFAGHIPLQISSMARLVALDFSFNQFSGSI 112
                G IP  +S++  L  +D S N  SG I
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 2e-11
 Identities = 29/146 (19%), Positives = 44/146 (30%), Gaps = 29/146 (19%)

Query: 302 IDLSSHQLRGNIHQLPN------NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355
           IDLSS  L      + +       L  +  SN++   S+          L     + N L
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF--KCSASLTSLDLSRNSL 112

Query: 356 TGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSI-ANCKM 414
           +G +          SL   S               L+ L+++ N L      S       
Sbjct: 113 SGPVTTLT------SLGSCSG--------------LKFLNVSSNTLDFPGKVSGGLKLNS 152

Query: 415 LEVLNLGNNQFSDKFPCWLYDAPSLH 440
           LEVL+L  N  S         +    
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCG 178

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  167 bits (426), Expect = 1e-48
 Identities = 92/318 (28%), Positives = 131/318 (41%), Gaps = 51/318 (16%)

Query: 3   WRQSTDCCD--WSGVDCDEAGH---VIGLDLSTESISGGIENAASLFSLHYLRSLNLART 57
           W  +TDCC+  W GV CD       V  LDLS  ++       +SL +L YL  L +   
Sbjct: 27  WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86

Query: 58  -SFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSI-SSI 115
            +  G  IP  +A ++ L YL ++    +G IP  +S +  LV LDFS+N  SG++  SI
Sbjct: 87  NNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 116 RWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE 175
               L NLV      N ++G+IP S   F       S    ++ +S NRL G IP +   
Sbjct: 146 S--SLPNLVGITFDGNRISGAIPDSYGSF-------SKLFTSMTISRNRLTGKIPPTFAN 196

Query: 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 235
           L  L  + LS N L G        +  N  K+ L+ NSL         +F          
Sbjct: 197 L-NLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSL---------AFD--------- 236

Query: 236 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS 295
                 +  +     L  L L  N+I   +P  + ++    LH LN+S N L G      
Sbjct: 237 ------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK--FLHSLNVSFNNLCG-----E 283

Query: 296 IPAL-RFIDLSSHQLRGN 312
           IP               N
Sbjct: 284 IPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (350), Expect = 9e-38
 Identities = 66/294 (22%), Positives = 105/294 (35%), Gaps = 48/294 (16%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQL-DKILNLGNLAKLDLS 210
           SS L T D       G +  +  +  ++ +L LS  NL     +   + NL  L  L + 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 211 -YNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNW 268
             N+L                           IP  +   +QL YLY++   +S  IP++
Sbjct: 85  GINNLV------------------------GPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 269 IWRVSVVGLHCLNLSHNLLVGFQGPYSIPA-------LRFIDLSSHQLRGNI----HQLP 317
           + ++    L  L+ S+N L G     ++P        L  I    +++ G I        
Sbjct: 121 LSQIK--TLVTLDFSYNALSG-----TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN 377
                +  S N  T  IP    N    L +   + N L G       +      + L+ N
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 378 SFMKKSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
           S             L  LDL  NR+ GT+P+ +   K L  LN+  N    + P
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (327), Expect = 2e-34
 Identities = 67/327 (20%), Positives = 120/327 (36%), Gaps = 48/327 (14%)

Query: 63  QIPSKLANISSL----TYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSI---SSI 115
           QI   L N ++L       +  +  + G +    +   R+  LD S           SS+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 116 RWEHLLNLVYAVLSD-NSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF 174
              +L  L +  +   N+L G IP ++        A  + L  L ++   + G+IP  + 
Sbjct: 73  --ANLPYLNFLYIGGINNLVGPIPPAI--------AKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 175 ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL--AVDESSRNYSFSPMLELL 232
           ++K L +L  S N L GT+    I +L NL  +    N +  A+ +S  +  FS +   +
Sbjct: 123 QIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRISGAIPDSYGS--FSKLFTSM 179

Query: 233 NLASCKLR-EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291
            ++  +L  +IP       L ++ LS N +  +               ++L+ N L    
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN--TQKIHLAKNSLAF-- 235

Query: 292 GPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAA 351
               +  +                   NL  +D  NN    ++P      +  L     +
Sbjct: 236 ---DLGKVGL---------------SKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVS 276

Query: 352 NNGLTGIIPASLCNATTLSLLDLSNNS 378
            N L G IP    N     +   +NN 
Sbjct: 277 FNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  116 bits (292), Expect = 1e-29
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 25/205 (12%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L ++  ++SG I     L  +  L +L+ +  + +GT +P  ++++ +L  +       +
Sbjct: 106 LYITHTNVSGAIP--DFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRIS 162

Query: 86  GHIPLQISSMARLV-ALDFSFNQFSGSI-SSIRWEHLLNLVYAVLSDNSLNGSIPRS--- 140
           G IP    S ++L  ++  S N+ +G I  +      LNL +  LS N L G        
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA---NLNLAFVDLSRNMLEGDASVLFGS 219

Query: 141 ------------MFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNN 188
                          F +     S  L+ LDL  NR+ G++P  + +LK L SL +S NN
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 189 LHGTVQLDKILNLGNLAKLDLSYNS 213
           L G +   +  NL        + N 
Sbjct: 280 LCGEI--PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 25/177 (14%)

Query: 280 LNLSHNLLVGFQGPYSIPA-------LRFIDLSSH-QLRGNI-HQLPN--NLIYIDFSNN 328
           L+LS         PY IP+       L F+ +     L G I   +     L Y+  ++ 
Sbjct: 55  LDLSGL---NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 329 NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKS----D 384
           N + +IP      +  L     + N L+G +P S+ +   L  +    N     S    D
Sbjct: 112 NVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI---SGAIPD 167

Query: 385 AFLNC--LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439
           ++ +   L  ++ ++ NRL G +P + AN   L  ++L  N              + 
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.0 bits (162), Expect = 4e-12
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 323 IDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG--IIPASLCNATTLSLLDLSNNSFM 380
            D  N  +   +         R+     +   L     IP+SL N   L+ L +   + +
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 381 KKS--DAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAP 437
                 A      L  L +    + G +P  ++  K L  L+   N  S   P  +   P
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 438 SL 439
           +L
Sbjct: 150 NL 151

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  174 bits (444), Expect = 1e-48
 Identities = 86/517 (16%), Positives = 150/517 (29%), Gaps = 88/517 (17%)

Query: 3   WRQSTDCCDWS---GVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSF 59
           W  + +   W    GV  +  G V GL L     SG +    ++  L  L  L L     
Sbjct: 60  WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV--PDAIGQLTELEVLALGSHGE 117

Query: 60  NGTQIPSKLANI-----------------------------SSLTYLNLSDAGFAGHIPL 90
              +       I                             S L    ++       I  
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 91  QISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNA 150
                 +   +    N  +    ++    L  L    + ++          +E      A
Sbjct: 178 SSRITLKDTQIGQLSNNITFVSKAVM--RLTKLRQFYMGNSPFVAENICEAWENENSEYA 235

Query: 151 SS-----------SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKIL 199
                          L  +++        +P  +  L ++  + ++ N      QL    
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 200 -------NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE-IPNLKNQSQL 251
                      +  + + YN+L       +      L +L     +L   +P   ++ +L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 252 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI---PALRFIDLSSHQ 308
             L L+ NQI+ EIP      +   +  L+ +HN L      +       +  ID S ++
Sbjct: 356 ASLNLAYNQIT-EIPANFCGFTE-QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 309 LRG----NIHQLPN------NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358
           +      N   L        N+  I+ SNN  +             L       N LT I
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST-GSPLSSINLMGNMLTEI 472

Query: 359 -------IPASLCNATTLSLLDLSNNSFMKKSDAFLNCL---LQTLDLNGNRLQGTVPKS 408
                     +  N   L+ +DL  N   K SD F       L  +DL+ N      P  
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

Query: 409 IANCKMLEVLNLG------NNQFSDKFPCWLYDAPSL 439
             N   L+   +        N+   ++P  +   PSL
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  150 bits (382), Expect = 4e-40
 Identities = 68/442 (15%), Positives = 133/442 (30%), Gaps = 71/442 (16%)

Query: 41  ASLFSLHYLRSLNLARTSFNG------------------TQIPSKLANISSLTYLNLSDA 82
            ++  L  LR   +  + F                         K  N+  LT + + + 
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 83  GFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL-------NLVYAVLSDNSL-N 134
                +P  + ++  +  ++ + N+             L        +    +  N+L  
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 135 GSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ 194
             +  S              L  L+   N+L G +P +     KL SL L+ N +     
Sbjct: 320 FPVETS------LQKMKK--LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP- 369

Query: 195 LDKIL-NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--------- 244
                     +  L  ++N L    +  +     ++  ++ +  ++  +           
Sbjct: 370 -ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 245 LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGF------QGPYSI-- 296
                 +  + LS NQIS+         S   L  +NL  N+L             +   
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGS--PLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 297 -PALRFIDLSSHQLRGNIHQLPN----NLIYIDFSNNNFTSSIPADTGNFMPRLRYF--- 348
              L  IDL  ++L              L+ ID S N+F+   P    N    L+ F   
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN-SSTLKGFGIR 544

Query: 349 ---CAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTV 405
               A  N      P  +    +L+ L + +N   K ++      +  LD+  N      
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN-ISVLDIKDNPNISID 603

Query: 406 PKSIANCKMLEVLNLGNNQFSD 427
              +       +  L  ++  D
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQD 625

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  172 bits (438), Expect = 4e-47
 Identities = 93/526 (17%), Positives = 160/526 (30%), Gaps = 106/526 (20%)

Query: 3   WRQSTDCCDWS---GVDCDEAGHVIGLDLS----TESISGGIENAASL------------ 43
           W  + +   W    GVD D  G V GL L+       +   I     L            
Sbjct: 302 WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 44  ----------------------------FSLHYLRSLNLARTSFNGTQIPSKLANISSLT 75
                                         L Y + LNL+    +      ++  I   +
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 76  YLNLSDAGFAGH------IPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLS 129
            ++L D            I   I  + +L  + F+ + F+    ++ WE           
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN------SD 475

Query: 130 DNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNL 189
                 +   S      +SN     L  ++L        +P  +++L +L SL ++ N  
Sbjct: 476 YAKQYENEELS------WSNLKD--LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 190 HGTVQL--------DKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE 241
               QL        D       +    + YN+L    +S +      L LL+    K+R 
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 242 IPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI---PA 298
           +       +L  L L  NQI  EIP      +   +  L  SHN L      ++      
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD-QVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 299 LRFIDLSSHQLRGNIHQLPN--------NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCA 350
           +  +D S +++      +          N   +  S N                +     
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT-GSPISTIIL 704

Query: 351 ANNGLTGI-------IPASLCNATTLSLLDLSNNSFMKKSDAFLNCL---LQTLDLNGNR 400
           +NN +T I          +  N   L+ +DL  N     SD F       L  +D++ N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 401 LQGTVPKSIANCKMLEVLNL------GNNQFSDKFPCWLYDAPSLH 440
              + P    N   L+   +        N+   ++P  +   PSL 
Sbjct: 765 FS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  152 bits (385), Expect = 4e-40
 Identities = 67/412 (16%), Positives = 128/412 (31%), Gaps = 62/412 (15%)

Query: 41  ASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD---------AGFAGHIPLQ 91
            S  +L  L  + L         +P  L ++  L  LN++                +   
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 92  ISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS 151
             +  ++      +N      +S   + ++ L       N +             F    
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--------HLEAFGTNV 595

Query: 152 SSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLS 210
              L  L L  N++   IP        ++  L  S N L     +    ++  +  +D S
Sbjct: 596 K--LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

Query: 211 YNSLAVDESSRNYSFSPM----LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISRE 264
           YN +  +  + + S           + L+  ++++ P       S +  + LS N ++  
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S 711

Query: 265 IPNWIWRV------SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN 318
           IP    +       +   L  ++L  N L       S+      D  +  L         
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT------SLSD----DFRATTLP-------- 753

Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYF------CAANNGLTGIIPASLCNATTLSLL 372
            L  +D S N F+S  P    N   +L+ F       A  N +    P  +    +L  L
Sbjct: 754 YLSNMDVSYNCFSS-FPTQPLN-SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 373 DLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQ 424
            + +N   K  +      L  LD+  N        S+       +  L  ++
Sbjct: 812 QIGSNDIRKVDEKLTP-QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  113 bits (283), Expect = 6e-27
 Identities = 59/378 (15%), Positives = 118/378 (31%), Gaps = 60/378 (15%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLAR--------TSFNGTQIPSKLANISSLTYL 77
           ++L        +     L+ L  L+SLN+A            + T++         +   
Sbjct: 496 VELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 78  NLSDAGFAG-HIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGS 136
            +             +  M +L  LD   N+    + +      + L    L  N +   
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAF--GTNVKLTDLKLDYNQIE-E 609

Query: 137 IPRSMFEF------------------PIFSNASSSALDTLDLSGNRLRG-----SIPVSV 173
           IP     F                   IF+  S   + ++D S N++       S  +  
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 174 FELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL------AVDESSRNYSFSP 227
           ++    +++ LS N +      +       ++ + LS N +      ++     NY  + 
Sbjct: 670 YKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 228 MLELLNLASCKLREIPN---LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSH 284
           +L  ++L   KL  + +         L  + +S N  S   P      S   L    + H
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSS--QLKAFGIRH 785

Query: 285 NLLVGF-----QGPYSI---PALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTS-SIP 335
                      Q P  I   P+L  + + S+ +R    +L   L  +D ++N   S  + 
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVT 845

Query: 336 ADTGNFMPRLRYFCAANN 353
           +        +        
Sbjct: 846 SVCPYIEAGMYVLLYDKT 863

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  168 bits (427), Expect = 5e-46
 Identities = 82/413 (19%), Positives = 140/413 (33%), Gaps = 42/413 (10%)

Query: 46  LHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSF 105
              +  LNL           +     S LT L++     +   P     +  L  L+   
Sbjct: 24  PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 106 NQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL 165
           N+ S       +    NL    L  NS+             F    +  L TLDLS N L
Sbjct: 83  NELSQLSDKT-FAFCTNLTELHLMSNSIQKIKNNP------FVKQKN--LITLDLSHNGL 133

Query: 166 RGSIPVSVFELKKLTSLLLSSNNLHGTVQLD-KILNLGNLAKLDLSYNSLAVDESSRNYS 224
             +   +  +L+ L  LLLS+N +      +  I    +L KL+LS N +          
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG---C 190

Query: 225 FS--PMLELLNLASCKL-----REIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGL 277
           F     L  L L + +L      ++      + ++ L LS +Q+S         +    L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 278 HCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQ------------LPNNLIYI 323
             L+LS+N L          +P L +  L  + ++                 L  +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 324 DFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK- 382
             S  +            +  L +    +N + GI          L  L LSN+    + 
Sbjct: 311 SISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 383 --SDAFLNC---LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
             ++ F++     L  L+L  N++      + +    LEVL+LG N+   +  
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  166 bits (423), Expect = 2e-45
 Identities = 85/426 (19%), Positives = 154/426 (36%), Gaps = 35/426 (8%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LD+   +IS           L  L+ LNL     +        A  ++LT L+L      
Sbjct: 54  LDVGFNTISKLEPEL--CQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQ 110

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
                       L+ LD S N  S +    +   L NL   +LS+N +            
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEE----- 164

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ--LDKILNLGN 203
                ++S+L  L+LS N+++   P     + +L  L L++  L  ++   L   L   +
Sbjct: 165 -LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 204 LAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ 260
           +  L LS + L     ++        L +L+L+   L  + N       QL+Y +L  N 
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNL 320
           I     + +  +    +  LNL  +         S+P +                    L
Sbjct: 284 IQHLFSHSLHGLF--NVRYLNLKRSFTKQSISLASLPKIDDFSFQW----------LKCL 331

Query: 321 IYIDFSNNNFTSSIPADTGNFMPRLRYFCAANN--GLTGIIPASLCNATTLSL--LDLSN 376
            +++  +N+    I ++    +  L+Y   +N+   L  +   +  +     L  L+L+ 
Sbjct: 332 EHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 377 NSFMK-KSDAFLNC-LLQTLDLNGNRLQGTVPKS-IANCKMLEVLNLGNNQFSDKFPCWL 433
           N   K +SDAF     L+ LDL  N +   +        + +  + L  N++        
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 434 YDAPSL 439
              PSL
Sbjct: 451 ALVPSL 456

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  151 bits (384), Expect = 3e-40
 Identities = 83/455 (18%), Positives = 152/455 (33%), Gaps = 57/455 (12%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L LS   I         +F+   L+ L L+         P     I  L  L L++    
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLG 208

Query: 86  GHIPLQIS---SMARLVALDFSFNQFSGSI-SSIRWEHLLNLVYAVLSDNSLNGSIPRSM 141
             +  ++    +   +  L  S +Q S +  ++       NL    LS N+LN     S 
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS- 267

Query: 142 FEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKK---------LTSLLLSSNNLHGT 192
                F+      L+   L  N ++     S+  L            T   +S  +L   
Sbjct: 268 -----FAWLPQ--LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK- 319

Query: 193 VQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLAS--CKLREIPNLK-- 246
           +       L  L  L++  N +   +S+    F+ +  L+ L+L++    LR + N    
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSN---MFTGLINLKYLSLSNSFTSLRTLTNETFV 376

Query: 247 --NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI---PALRF 301
               S L  L L++N+IS+   +    +    L  L+L  N +              +  
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLG--HLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 302 IDLSSHQLR----GNIHQLPNNLIYIDFSNNNFTSSIPADTGNF--MPRLRYFCAANNGL 355
           I LS ++       +   +P+ L  +        + + +    F  +  L     +NN +
Sbjct: 435 IYLSYNKYLQLTRNSFALVPS-LQRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNI 492

Query: 356 TGIIPASLCNATTLSLLDLSNNSF---------MKKSDAFLNCL-LQTLDLNGNRLQGTV 405
             I    L     L +LDL +N+                      L  L+L  N      
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 406 PKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
            +   +   L++++LG N  +        +  SL 
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  151 bits (383), Expect = 5e-40
 Identities = 82/397 (20%), Positives = 142/397 (35%), Gaps = 43/397 (10%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LDLS  +++    +  S   L  L    L   +         L  + ++ YLNL  +   
Sbjct: 253 LDLSYNNLNVVGND--SFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTK 309

Query: 86  GHI---------PLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGS 136
             I               +  L  L+   N   G  S++ +  L+NL Y  LS++  +  
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLR 368

Query: 137 IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLD 196
              +      F + + S L  L+L+ N++      +   L  L  L L  N +   +   
Sbjct: 369 TLTN----ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 197 KILNLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN----LKNQSQ 250
           +   L N+ ++ LSYN           SF+  P L+ L L    L+ + +     +    
Sbjct: 425 EWRGLENIFEIYLSYNKY---LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 251 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR 310
           L  L LS N I+    + +    +  L  L+L HN L        +          + L+
Sbjct: 482 LTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLA------RLWKHANPGGPIYFLK 533

Query: 311 GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLS 370
           G      ++L  ++  +N F   IP +    +  L+      N L  +  +   N  +L 
Sbjct: 534 GL-----SHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 371 LLDLSNNSFMK-KSDAFLNCL--LQTLDLNGNRLQGT 404
            L+L  N     +   F      L  LD+  N    T
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (327), Expect = 1e-32
 Identities = 66/304 (21%), Positives = 115/304 (37%), Gaps = 28/304 (9%)

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
            +  D S  +L   +P  +     +T L L+ N L   +          L  LD+ +N++
Sbjct: 6   HEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTI 61

Query: 215 AVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIW 270
           +  E         +  L++LNL   +L ++ +      + L  L+L  N I +   N   
Sbjct: 62  SKLEPE---LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 271 RVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQL-----PNNLIYI 323
           +     L  L+LSHN L   +      +  L+ + LS+++++    +       ++L  +
Sbjct: 119 KQK--NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 324 DFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLC---NATTLSLLDLSNNSFM 380
           + S+N      P      + RL      N  L   +   LC     T++  L LSN+   
Sbjct: 177 ELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 381 KKSDAFLNCL----LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDA 436
             S+     L    L  LDL+ N L      S A    LE   L  N     F   L+  
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 437 PSLH 440
            ++ 
Sbjct: 296 FNVR 299

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  166 bits (423), Expect = 6e-46
 Identities = 82/454 (18%), Positives = 146/454 (32%), Gaps = 52/454 (11%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L L+   I      A     L  L+ L    T+         + ++ +L  LN++     
Sbjct: 81  LILTGNPIQSLALGA--FSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137

Query: 86  G-HIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV----LSDNSLNGSIPRS 140
              +P   S++  L  LD S N+      +     L  +        LS N +N   P  
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQP-- 194

Query: 141 MFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKI- 198
                 F       L  L L  N    ++  +  + L  L    L          L+K  
Sbjct: 195 ----GAFKEIR---LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 199 -LNLGNLAKLDLSYNSLAVDESSRNYSFS-----PMLELLNLASCKLREIPNLKNQSQLQ 252
              L  L  L +    LA  +   +           +   +L S  +  + +       Q
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 253 YLYLSENQISREIPNWIWRVSVV-----------------GLHCLNLSHNLL----VGFQ 291
           +L L   +  +     +  +  +                  L  L+LS N L       Q
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 292 GPYSIPALRFIDLSSHQLRGNIHQLPN--NLIYIDFSNNNFTSSIPADTGNFMPRLRYFC 349
             +   +L+++DLS + +            L ++DF ++N            +  L Y  
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 350 AANNGLTGIIPASLCNATTLSLLDLSNNSFMK--KSDAFLNCL-LQTLDLNGNRLQGTVP 406
            ++              ++L +L ++ NSF +    D F     L  LDL+  +L+   P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 407 KSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
            +  +   L+VLN+ +N F            SL 
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  149 bits (379), Expect = 7e-40
 Identities = 77/414 (18%), Positives = 142/414 (34%), Gaps = 52/414 (12%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LDLS   ++     A   F    L  L L     +   + + +  ++ L    L    F 
Sbjct: 182 LDLSLNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 86  GHIPLQ---ISSMARLVALDFSFNQ-----FSGSISSIRWEHLLNLVYAVLSDNSLNGSI 137
               L+    S++  L  L     +     +        +  L N+    L   ++    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 138 PRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDK 197
             S                 L+L   +      + +  LK+LT       N         
Sbjct: 299 DFSYN----------FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS------ 342

Query: 198 ILNLGNLAKLDLSYNSLAVDESSRNYSFS-PMLELLNLASCKLREIP-NLKNQSQLQYLY 255
            ++L +L  LDLS N L+         F    L+ L+L+   +  +  N     QL++L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQ 315
              + + +     ++  S+  L  L++SH                F  LSS         
Sbjct: 403 FQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRV------AFNGIFNGLSS--------- 446

Query: 316 LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLS 375
               L  +  + N+F  +   D    +  L +   +   L  + P +  + ++L +L++S
Sbjct: 447 ----LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502

Query: 376 NNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANC-KMLEVLNLGNNQFS 426
           +N+F         CL  LQ LD + N +  +  + + +    L  LNL  N F+
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (353), Expect = 3e-36
 Identities = 70/391 (17%), Positives = 115/391 (29%), Gaps = 44/391 (11%)

Query: 60  NGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEH 119
           N  +IP  L    S   L+LS             S   L  LD S  +         ++ 
Sbjct: 18  NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQS 74

Query: 120 LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL 179
           L +L   +L+ N +      +      FS  SS  L  L      L       +  LK L
Sbjct: 75  LSHLSTLILTGNPIQSLALGA------FSGLSS--LQKLVAVETNLASLENFPIGHLKTL 126

Query: 180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL------LN 233
             L ++ N +      +   NL NL  LDLS N +   +S        + ++      L+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI---QSIYCTDLRVLHQMPLLNLSLD 183

Query: 234 LASCKLREI-PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG 292
           L+   +  I P    + +L  L L  N  S  +     +  + GL    L          
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGN 242

Query: 293 PYSIPALRFIDLSSHQLRGNIHQLPN--------------NLIYIDFSNNNFTSSIPADT 338
                      L +  +        +              N+      +           
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--- 299

Query: 339 GNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNG 398
            ++    ++    N          L +   L  L  ++N             L+ LDL+ 
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356

Query: 399 NRLQ--GTVPKSIANCKMLEVLNLGNNQFSD 427
           N L   G   +S      L+ L+L  N    
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (286), Expect = 2e-27
 Identities = 63/366 (17%), Positives = 108/366 (29%), Gaps = 37/366 (10%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQ-----IPSKLANISSLTYLNLS 80
           L L     S  +     +  L  L    L    F           S L  + +LT     
Sbjct: 205 LTLRNNFDSLNVMKT-CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 81  DA---GFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSI 137
            A    +   I    + +  + +                  +     +  L +       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLELVNCKFGQFP 320

Query: 138 PRSMFEFP-----------IFSNASSSALDTLDLSGNRL--RGSIPVSVFELKKLTSLLL 184
              +                FS     +L+ LDLS N L  +G    S F    L  L L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 185 SSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN 244
           S N +         L L  L  LD  +++L        +     L  L+++    R   N
Sbjct: 381 SFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 245 --LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI---PAL 299
                 S L+ L ++ N         I+   +  L  L+LS   L     P +     +L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLS-PTAFNSLSSL 496

Query: 300 RFIDLSSHQLRGNIHQL---PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT 356
           + +++S +             N+L  +D+S N+  +S   +  +F   L +     N   
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 357 GIIPAS 362
                 
Sbjct: 557 CTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.8 bits (187), Expect = 6e-15
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 3/126 (2%)

Query: 303 DLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS 362
                        LP +   +D S N           +F P L+    +   +  I   +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGA 71

Query: 363 LCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNL 420
             + + LS L L+ N     +    + L  LQ L      L       I + K L+ LN+
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 421 GNNQFS 426
            +N   
Sbjct: 132 AHNLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 2/117 (1%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L ++  S             L  L  L+L++        P+   ++SSL  LN+S   F 
Sbjct: 450 LKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFF 507

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMF 142
                    +  L  LD+S N    S          +L +  L+ N    +     F
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (388), Expect = 4e-41
 Identities = 74/394 (18%), Positives = 134/394 (34%), Gaps = 39/394 (9%)

Query: 42  SLFSLHYLRSLNLARTSFNGTQIPS-KLANISSLTYLNLSDAGFAGHIPLQISSMAR--L 98
             F     +SLN   T          K + I SL      D       P     +    +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 99  VALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTL 158
            +++   + F    S+  +     L    L+   L+  +P  +             L  L
Sbjct: 257 ESINLQKHYFFNISSNT-FHCFSGLQELDLTATHLS-ELPSGLVGLS--------TLKKL 306

Query: 159 DLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDE 218
            LS N+      +S      LT L +  N     +    + NL NL +LDLS++ +   +
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 219 SSRNYSFS-PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVV 275
                  +   L+ LNL+  +   +     K   QL+ L L+  ++  +     ++ ++ 
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLH 425

Query: 276 GLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIP 335
            L  LNLSH+LL             F  L               L +++   N+F     
Sbjct: 426 LLKVLNLSHSLLD------ISSEQLFDGLP-------------ALQHLNLQGNHFPKGNI 466

Query: 336 ADTGNF--MPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFLNCLLQ 392
             T +   + RL     +   L+ I   +  +   ++ +DLS+N       +A  +    
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 393 TLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
            L+L  N +   +P  +        +NL  N   
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (361), Expect = 2e-37
 Identities = 74/427 (17%), Positives = 140/427 (32%), Gaps = 45/427 (10%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG-F 84
           L L +  IS         F    L+ L+    + +       ++++   T L+L+  G  
Sbjct: 134 LYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGND 190

Query: 85  AGHIPLQISSMARLVALDFSFNQFSG-SISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFE 143
              I       A   +L+F   Q        ++   + +L      D       P     
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA---- 246

Query: 144 FPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN 203
             +F      ++++++L  +        +      L  L L++ +L  +     ++ L  
Sbjct: 247 --VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLST 302

Query: 204 LAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN---LKNQSQLQYLYLSE 258
           L KL LS N     E+    S S    L  L++     R       L+N   L+ L LS 
Sbjct: 303 LKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN 318
           + I       +   ++  L  LNLS+N  +      S+    F +               
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPL------SLKTEAFKECP------------- 400

Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
            L  +D +               +  L+    +++ L             L  L+L  N 
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 379 FMKKSDAFLNCL-----LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWL 433
           F K +    N L     L+ L L+   L      +  + KM+  ++L +N+ +      L
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 434 YDAPSLH 440
                ++
Sbjct: 521 SHLKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  137 bits (347), Expect = 2e-35
 Identities = 69/396 (17%), Positives = 124/396 (31%), Gaps = 34/396 (8%)

Query: 62  TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
            +IP  L   +S   L  S            S +  L  LD +  Q         ++   
Sbjct: 25  NEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQH 81

Query: 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181
            L   VL+ N L      +       S   +  L  L      +     + +   K L S
Sbjct: 82  RLDTLVLTANPLIFMAETA------LSGPKA--LKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL----LNLASC 237
           L L SN++   ++L K      L  LD   N++           S + +     LNL   
Sbjct: 134 LYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAI---HYLSKEDMSSLQQATNLSLNLNGN 189

Query: 238 KLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ----G 292
            +  I     + +  Q L     Q    I   +   ++  L                   
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 293 PYSIPALRFIDLSSHQLRG---NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFC 349
                ++  I+L  H       N     + L  +D +  + +  +P+     +  L+   
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLV 307

Query: 350 AANNGLTGIIPASLCNATTLSLLDLSNNSFMKK--SDAFLNCL-LQTLDLNGNRLQ--GT 404
            + N    +   S  N  +L+ L +  N+   +  +    N   L+ LDL+ + ++    
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 405 VPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
               + N   L+ LNL  N+          + P L 
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 27/200 (13%)

Query: 232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291
            N  +  L EIP     S  + L  S N +         R+    L  L+L+   +    
Sbjct: 17  YNCENLGLNEIPGTLPNS-TECLEFSFNVLPTIQNTTFSRLI--NLTFLDLTRCQIY--- 70

Query: 292 GPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAA 351
               I    F                  L  +  + N     +     +    L++    
Sbjct: 71  ---WIHEDTFQSQH-------------RLDTLVLTANPLIF-MAETALSGPKALKHLFFI 113

Query: 352 NNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFLNCL-LQTLDLNGNRLQGTVPKSI 409
             G++ I    L N  TL  L L +N     K         L+ LD   N +     + +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 410 ANCKMLEV--LNLGNNQFSD 427
           ++ +      LNL  N  + 
Sbjct: 174 SSLQQATNLSLNLNGNDIAG 193

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 15/170 (8%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD---A 82
           LDL+   +    +  +   +LH L+ LNL+ +  + +        + +L +LNL      
Sbjct: 405 LDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHFP 462

Query: 83  GFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMF 142
                    + ++ RL  L  SF   S SI    +  L  + +  LS N L  S      
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLT-SSSIEAL 520

Query: 143 EFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGT 192
                   S      L+L+ N +   +P  +  L +  ++ L  N L  T
Sbjct: 521 --------SHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 6/120 (5%)

Query: 323 IDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK- 381
            +  N      IP   G           + N L  I   +      L+ LDL+       
Sbjct: 17  YNCENLGLNE-IP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 382 KSDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
             D F +   L TL L  N L      +++  K L+ L       S      L++  +L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (385), Expect = 1e-40
 Identities = 74/433 (17%), Positives = 154/433 (35%), Gaps = 35/433 (8%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L      ++        +  L  L+ LN+A    +  ++P+  +N+++L +++LS     
Sbjct: 109 LVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWE--HLLNLVYAVLSDNSLNGSIPRSMFE 143
                 +  +     ++ S +     I  I+ +    + L    L  N  + +I ++  +
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 144 FPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSL-------LLSSNNLHGTVQLD 196
                  + + L    L     +    + +FE   +  L          +     +  + 
Sbjct: 227 -------NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279

Query: 197 KILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 256
           K   L N++ + L+  S+   +   +       + L++  C+L++ P L +   L+ L L
Sbjct: 280 KFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTL 335

Query: 257 SENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ----GPYSIPALRFIDLSSHQLRGN 312
           + N+ S          ++  L  L+LS N L              +LR +DLS +     
Sbjct: 336 TMNKGSISFKKV----ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391

Query: 313 IHQLPN--NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLS 370
                    L ++DF ++             + +L Y   +               T+L+
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 371 LLDLSNNSF--MKKSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
            L ++ NSF     S+ F N   L  LDL+  +L+            L++LN+ +N    
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

Query: 428 KFPCWLYDAPSLH 440
                     SL 
Sbjct: 512 LDSSHYNQLYSLS 524

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  147 bits (372), Expect = 8e-39
 Identities = 84/430 (19%), Positives = 149/430 (34%), Gaps = 29/430 (6%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LDLS   I    + A     LH+L +L L          P   + ++SL  L   +   A
Sbjct: 61  LDLSRCEIETIEDKA--WHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLA 117

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
                 I  +  L  L+ + N          + +L NLV+  LS N +  +I  +  +  
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQ-- 174

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
            F   +     +LD+S N +   I    F+  KL  L L  N     +    + NL  L 
Sbjct: 175 -FLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR---------EIPNLKNQSQLQYLYL 256
              L       + +   +  S M  L ++   + R         +I      + +  + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 257 SENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH-Q 315
           +   I   + +            L++    L  F     +P L+ + L+ ++   +    
Sbjct: 293 AGVSIK-YLEDVPKHFK---WQSLSIIRCQLKQFP-TLDLPFLKSLTLTMNKGSISFKKV 347

Query: 316 LPNNLIYIDFSNNNFTSSIPADTGNF-MPRLRYFCAANNGLTGIIPASLCNATTLSLLDL 374
              +L Y+D S N  + S      +     LR+   + NG   I+ A+      L  LD 
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDF 406

Query: 375 SNN--SFMKKSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP- 430
            ++    + +  AFL+   L  LD++    +            L  L +  N F D    
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466

Query: 431 CWLYDAPSLH 440
               +  +L 
Sbjct: 467 NVFANTTNLT 476

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (367), Expect = 3e-38
 Identities = 77/413 (18%), Positives = 142/413 (34%), Gaps = 52/413 (12%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LD+S   I    + A   F    L  L L     +   + + L N++ L    L    F 
Sbjct: 186 LDMSLNPIDFIQDQA---FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 86  GHIPLQISSMA--------RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSI 137
               L+I   +         +     ++     S   +++  L N+    L+  S+    
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF-SDDIVKFHCLANVSAMSLAGVSIKY-- 299

Query: 138 PRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDK 197
                   +          +L +   +L+        +L  L SL L+ N         K
Sbjct: 300 --------LEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS---ISFK 345

Query: 198 ILNLGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLY 255
            + L +L+ LDLS N+L      S +   +  L  L+L+      +        +LQ+L 
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405

Query: 256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQ 315
              + + R      +  S+  L  L++S+                F+ L+          
Sbjct: 406 FQHSTLKRVTEFSAFL-SLEKLLYLDISYTNT------KIDFDGIFLGLT---------- 448

Query: 316 LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLS 375
              +L  +  + N+F  +  ++       L +   +   L  I          L LL++S
Sbjct: 449 ---SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 376 NNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
           +N+ +    +  N L  L TLD + NR++ +        K L   NL NN  +
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (306), Expect = 5e-30
 Identities = 65/374 (17%), Positives = 115/374 (30%), Gaps = 33/374 (8%)

Query: 62  TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
           +++P  +   SS   ++LS            S+ + L  LD S  +         W  L 
Sbjct: 24  SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLH 80

Query: 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181
           +L   +L+ N +    P S      FS  +S  L+ L     +L       + +L  L  
Sbjct: 81  HLSNLILTGNPIQSFSPGS------FSGLTS--LENLVAVETKLASLESFPIGQLITLKK 132

Query: 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV---DESSRNYSFSPMLELLNLASCK 238
           L ++ N +H         NL NL  +DLSYN +     ++         +   L+++   
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 239 LREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIP 297
           +  I        +L  L L  N  S  I     + ++ GLH   L        +      
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLEIFE 251

Query: 298 ALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG 357
                 L               +     +  N  S         +  +     A   +  
Sbjct: 252 PSIMEGLCD-----------VTIDEFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSIKY 299

Query: 358 IIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEV 417
           +    +        L +      +     L   L++L L  N+   ++         L  
Sbjct: 300 L--EDVPKHFKWQSLSIIRCQLKQFPTLDLPF-LKSLTLTMNKG--SISFKKVALPSLSY 354

Query: 418 LNLGNNQFSDKFPC 431
           L+L  N  S    C
Sbjct: 355 LDLSRNALSFSGCC 368

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  109 bits (274), Expect = 8e-26
 Identities = 60/318 (18%), Positives = 122/318 (38%), Gaps = 33/318 (10%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
             L+  +     ++      L  + +++L   +    +    +        L++      
Sbjct: 266 FRLTYTNDFS--DDIVKFHCLANVSAMSL---AGVSIKYLEDVPKHFKWQSLSIIRCQLK 320

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
                    +  L +L  + N+ S S   +    L +L Y  LS N+L+ S   S     
Sbjct: 321 Q---FPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCS----- 369

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
            +S+  +++L  LDLS N     +  +   L++L  L    + L    +    L+L  L 
Sbjct: 370 -YSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 206 KLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN---LKNQSQLQYLYLSENQ 260
            LD+SY +    +   +  F  +  L  L +A    ++        N + L +L LS+ Q
Sbjct: 428 YLDISYTNT---KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPY--SIPALRFIDLSSHQLRG---NIHQ 315
           + +        +    L  LN+SHN L+     +   + +L  +D S +++      +  
Sbjct: 485 LEQISWGVFDTLH--RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 316 LPNNLIYIDFSNNNFTSS 333
            P +L + + +NN+    
Sbjct: 543 FPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.7 bits (249), Expect = 1e-22
 Identities = 45/294 (15%), Positives = 90/294 (30%), Gaps = 34/294 (11%)

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
           T      +L   +P  +       ++ LS N L   ++     N   L  LDLS   +  
Sbjct: 15  TYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEI-- 68

Query: 217 DESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRV 272
            E+  + ++  +  L  L L    ++          + L+ L   E +++      I   
Sbjct: 69  -ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI--G 125

Query: 273 SVVGLHCLNLSHNLLVGFQGPYSI---PALRFIDLSSHQLRG-------NIHQLPNNLIY 322
            ++ L  LN++HN +   + P        L  +DLS + ++         + + P   + 
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 323 IDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK 382
           +D S N     I       +         N   + I+   L N   L +  L    F  +
Sbjct: 186 LDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 383 S----------DAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
                      +   +  +    L                  +  ++L      
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 321 IYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFM 380
           I     +   +  +P    +     +    + N L  +   S  N + L  LDLS     
Sbjct: 14  ITYQCMDQKLSK-VPD---DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 381 K-KSDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPS 438
             +  A+     L  L L GN +Q   P S +    LE L     + +      +    +
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 439 L 439
           L
Sbjct: 130 L 130

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (336), Expect = 2e-34
 Identities = 84/388 (21%), Positives = 149/388 (38%), Gaps = 38/388 (9%)

Query: 42  SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101
            +F+   L                    ++  +T L     G        +  +  L  +
Sbjct: 16  QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73

Query: 102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLS 161
           +FS NQ +  I+ +  ++L  LV  ++++N +    P         +N ++  L  L L 
Sbjct: 74  NFSNNQLT-DITPL--KNLTKLVDILMNNNQIADITP--------LANLTN--LTGLTLF 120

Query: 162 GNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSR 221
            N++    P+    L  L  L LSSN +     +  +  L +L +L        +   + 
Sbjct: 121 NNQITDIDPLK--NLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQVTDLKPLAN 175

Query: 222 NYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 281
             +    LE L+++S K+ +I  L   + L+ L  + NQIS   P       +  L  L+
Sbjct: 176 LTT----LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG----ILTNLDELS 227

Query: 282 LSHNLLVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSIPADTG 339
           L+ N L       S+  L  +DL+++Q+     +  L   L  +    N  ++  P    
Sbjct: 228 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT-KLTELKLGANQISNISPLAG- 285

Query: 340 NFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGN 399
             +  L       N L  I P  + N   L+ L L  N+    S       LQ L    N
Sbjct: 286 --LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341

Query: 400 RLQGTVPKSIANCKMLEVLNLGNNQFSD 427
           ++  +   S+AN   +  L+ G+NQ SD
Sbjct: 342 KV--SDVSSLANLTNINWLSAGHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (306), Expect = 2e-30
 Identities = 81/433 (18%), Positives = 151/433 (34%), Gaps = 83/433 (19%)

Query: 22  HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD 81
             +   L   +++  +    S   L  + +L        G +    +  +++LT +N S+
Sbjct: 25  EKMKTVLGKTNVTDTV----SQTDLDQVTTLQA---DRLGIKSIDGVEYLNNLTQINFSN 77

Query: 82  AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSM 141
                  PL   ++ +LV +  + NQ +  I+ +   +L NL    L +N +    P   
Sbjct: 78  NQLTDITPL--KNLTKLVDILMNNNQIA-DITPL--ANLTNLTGLTLFNNQITDIDP--- 129

Query: 142 FEFPIFSNASSSALDTLDLSGNRLRGSIPVS-------------------VFELKKLTSL 182
                  N ++  L+ L+LS N +     +S                   +  L  L  L
Sbjct: 130 -----LKNLTN--LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 182

Query: 183 LLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI 242
            +SSN +     +  +  L NL  L  + N +              L+ L+L   +L++I
Sbjct: 183 DISSNKVSD---ISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELSLNGNQLKDI 236

Query: 243 PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFI 302
             L + + L  L L+ NQIS   P               LS               L  +
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP---------------LSGL-----------TKLTEL 270

Query: 303 DLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360
            L ++Q+     +  L   L  ++ + N      P    + +  L Y     N ++ I P
Sbjct: 271 KLGANQISNISPLAGLT-ALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP 326

Query: 361 ASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNL 420
             + + T L  L   NN     S       +  L    N++    P  +AN   +  L L
Sbjct: 327 --VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382

Query: 421 GNNQFSDKFPCWL 433
            +  +++    + 
Sbjct: 383 NDQAWTNAPVNYK 395

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (295), Expect = 5e-29
 Identities = 81/395 (20%), Positives = 157/395 (39%), Gaps = 41/395 (10%)

Query: 37  IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMA 96
           + +   L +L  L  + +   + N     + LAN+++LT L L +       PL   ++ 
Sbjct: 80  LTDITPLKNLTKLVDILM---NNNQIADITPLANLTNLTGLTLFNNQITDIDPL--KNLT 134

Query: 97  RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALD 156
            L  L+ S N  S  IS++    L +L       N +    P         +N ++  L+
Sbjct: 135 NLNRLELSSNTIS-DISAL--SGLTSLQQLSFG-NQVTDLKP--------LANLTT--LE 180

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
            LD+S N++  S    + +L  L SL+ ++N +     +  +  L NL +L L+ N L  
Sbjct: 181 RLDISSNKV--SDISVLAKLTNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLKD 235

Query: 217 DESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVG 276
             +  +      L  L+LA+ ++  +  L   ++L  L L  NQIS  I        +  
Sbjct: 236 IGTLASL---TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NISPLA---GLTA 288

Query: 277 LHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSI 334
           L  L L+ N L       ++  L ++ L  + +     +  L   L  + F NN  +   
Sbjct: 289 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK-LQRLFFYNNKVSDVS 347

Query: 335 PADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL-LQT 393
                  +  + +  A +N ++ + P  L N T ++ L L++ ++      +   + +  
Sbjct: 348 SLA---NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 394 LDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK 428
              N        P +I++       ++  N  S  
Sbjct: 403 TVKNVTGAL-IAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.9 bits (203), Expect = 5e-17
 Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 22/252 (8%)

Query: 179 LTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK 238
           L S  ++ +      Q+     L    K  L   ++    S  +      +  L      
Sbjct: 3   LGSATITQDTP--INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLG 57

Query: 239 LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA 298
           ++ I  ++  + L  +  S NQ++   P      ++  L  + +++N +       ++  
Sbjct: 58  IKSIDGVEYLNNLTQINFSNNQLTDITPL----KNLTKLVDILMNNNQIADITPLANLTN 113

Query: 299 LRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT 356
           L  + L ++Q+     +  L  NL  ++ S+N  +          +  L+     N  +T
Sbjct: 114 LTGLTLFNNQITDIDPLKNLT-NLNRLELSSNTISDISALSG---LTSLQQLSFGNQ-VT 168

Query: 357 GIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKML 415
            + P  L N TTL  LD+S+N              L++L    N++    P  +     L
Sbjct: 169 DLKP--LANLTTLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDITP--LGILTNL 223

Query: 416 EVLNLGNNQFSD 427
           + L+L  NQ  D
Sbjct: 224 DELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 15/203 (7%)

Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
           P+          + +I      ++     L +  ++  +        +  +  L      
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQ----TDLDQVTTLQADRLG 57

Query: 287 LVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPR 344
           +    G   +  L  I+ S++QL     +  L   L+ I  +NN      P      +  
Sbjct: 58  IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLT-KLVDILMNNNQIADITPLAN---LTN 113

Query: 345 LRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGT 404
           L      NN +T I P  L N T L+ L+LS+N+    S       LQ L         T
Sbjct: 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV---T 168

Query: 405 VPKSIANCKMLEVLNLGNNQFSD 427
             K +AN   LE L++ +N+ SD
Sbjct: 169 DLKPLANLTTLERLDISSNKVSD 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (326), Expect = 5e-34
 Identities = 76/384 (19%), Positives = 143/384 (37%), Gaps = 45/384 (11%)

Query: 49  LRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQF 108
             +L       N        A+++      L  A     +      +  +  L  +  + 
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKV 56

Query: 109 SGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS 168
           + SI  I  E+L NL Y  L+ N +    P         SN     L  L +  N++  +
Sbjct: 57  A-SIQGI--EYLTNLEYLNLNGNQITDISP--------LSNLVK--LTNLYIGTNKI--T 101

Query: 169 IPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM 228
              ++  L  L  L L+ +N+     +  + NL  +  L+L  N    D S      S M
Sbjct: 102 DISALQNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLGANHNLSDLSP----LSNM 154

Query: 229 --LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
             L  L +   K++++  + N + L  L L+ NQI    P      S+  LH      N 
Sbjct: 155 TGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQ 210

Query: 287 LVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPR 344
           +       ++  L  + + ++++     +  L   L +++   N  +  I A     + +
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ-LTWLEIGTNQISD-INAVKD--LTK 266

Query: 345 LRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQ 402
           L+     +N ++ I    L N + L+ L L+NN    +    +  L  L TL L+ N + 
Sbjct: 267 LKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 403 GTVPKSIANCKMLEVLNLGNNQFS 426
              P  +A+   ++  +  N    
Sbjct: 325 DIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (262), Expect = 4e-25
 Identities = 60/286 (20%), Positives = 123/286 (43%), Gaps = 29/286 (10%)

Query: 37  IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMA 96
           I + + L +L  L +L +     N     S L N+++L  L L++   +   PL  +++ 
Sbjct: 78  ITDISPLSNLVKLTNLYI---GTNKITDISALQNLTNLRELYLNEDNISDISPL--ANLT 132

Query: 97  RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIP----RSMFEFPIFSN--- 149
           ++ +L+   N     +S +   ++  L Y  ++++ +    P      ++   +  N   
Sbjct: 133 KMYSLNLGANHNLSDLSPL--SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE 190

Query: 150 -----ASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL 204
                AS ++L       N++    PV+   + +L SL + +N +     L  + NL  L
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDITPVA--NMTRLNSLKIGNNKITD---LSPLANLSQL 245

Query: 205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISRE 264
             L++  N +              L++LN+ S ++ +I  L N SQL  L+L+ NQ+  E
Sbjct: 246 TWLEIGTNQI---SDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNE 302

Query: 265 IPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR 310
               I  ++   L  L LS N +   +   S+  +   D ++  ++
Sbjct: 303 DMEVIGGLT--NLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 46/240 (19%), Positives = 92/240 (38%), Gaps = 31/240 (12%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L+L        +     L ++  L  L +   + +  +  + +AN++ L  L+L+     
Sbjct: 137 LNLGANHNLSDLSP---LSNMTGLNYLTV---TESKVKDVTPIANLTDLYSLSLNYNQIE 190

Query: 86  GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
              PL  +S+  L       NQ +  I+ +   ++  L    + +N +    P       
Sbjct: 191 DISPL--ASLTSLHYFTAYVNQIT-DITPV--ANMTRLNSLKIGNNKITDLSP------- 238

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
             +N S   L  L++  N++     V   +L KL  L + SN +     +  + NL  L 
Sbjct: 239 -LANLSQ--LTWLEIGTNQISDINAVK--DLTKLKMLNVGSNQISD---ISVLNNLSQLN 290

Query: 206 KLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 263
            L L+ N L  ++         +  L  L L+   + +I  L + S++     +   I +
Sbjct: 291 SLFLNNNQLGNEDME---VIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (326), Expect = 2e-32
 Identities = 75/428 (17%), Positives = 145/428 (33%), Gaps = 37/428 (8%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L L    +S  +       +L  L  L+L++       +      ++SL  ++ S     
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 86  GHIP--LQISSMARLVALDFSFNQFS-----GSISSIRWEHLLNLVYAVLSDNSLNGSIP 138
                 L+      L     + N             +     + L    +S N     I 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 139 RSMFEF----PIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLL---LSSNNLHG 191
            +          FS   +  +       + ++     + F     +S+    LS   +  
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF- 279

Query: 192 TVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LKN 247
           ++       L +L  L+L+YN +       + +F  +  L++LNL+   L E+ +     
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKI---NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 248 QSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSH 307
             ++ Y+ L +N I+  I +  ++  +  L  L+L  N L        IP++  I LS +
Sbjct: 337 LPKVAYIDLQKNHIA-IIQDQTFK-FLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGN 391

Query: 308 QLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNA- 366
           +L   + ++      I  S N   +         +P L+      N  +        +  
Sbjct: 392 KLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 367 TTLSLLDLSNNSFMKKSDA-----FLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
            +L  L L  N      +          L  LQ L LN N L    P   ++   L  L+
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 420 LGNNQFSD 427
           L +N+ + 
Sbjct: 511 LNSNRLTV 518

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  127 bits (322), Expect = 7e-32
 Identities = 67/390 (17%), Positives = 137/390 (35%), Gaps = 52/390 (13%)

Query: 70  NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLS 129
            I+   + NL+       +P  +++      L  SFN    ++++  +  L  L    L 
Sbjct: 7   RIAFYRFCNLT------QVPQVLNT---TERLLLSFNYIR-TVTASSFPFLEQLQLLELG 56

Query: 130 DNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNN 188
                 +I +  F        +   L  LDL  +++   +    F+ L  L  L L    
Sbjct: 57  SQYTPLTIDKEAF-------RNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCG 108

Query: 189 LHGTVQLDKIL-NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP---- 243
           L   V  D    NL  L +LDLS N +       ++     L+ ++ +S ++  +     
Sbjct: 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168

Query: 244 -NLKNQSQLQYLYLSENQISREIP----NWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA 298
             L+ ++ L +  L+ N +   +       +     + L  L++S N            A
Sbjct: 169 EPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227

Query: 299 LRFIDLSSHQLRGNIHQL-------------------PNNLIYIDFSNNNFTSSIPADTG 339
           +      S  L  +I                       +++ ++D S+    S + +   
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVF 286

Query: 340 NFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLN 397
             +  L+    A N +  I   +      L +L+LS N   +   +    L  +  +DL 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 398 GNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
            N +     ++    + L+ L+L +N  + 
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (292), Expect = 5e-28
 Identities = 82/419 (19%), Positives = 151/419 (36%), Gaps = 48/419 (11%)

Query: 39  NAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARL 98
            A+S   L  L+ L L       T       N+ +L  L+L  +      P     +  L
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99

Query: 99  VALDFSFNQFS-GSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDT 157
             L   F   S   +    + +L  L    LS N +     RS++  P F   +S  L +
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI-----RSLYLHPSFGKLNS--LKS 152

Query: 158 LDLSGNRLRGSIPVSVFE---LKKLTSLLLSSNNLH-----GTVQLDKILNLGNLAKLDL 209
           +D S N++   +     E    K L+   L++N+L+        +         L  LD+
Sbjct: 153 IDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

Query: 210 SYNSLAVDESS-----------RNYSFSPMLELLNLASCKLREIPNL----KNQSQLQYL 254
           S N   VD +             +   +  +         +++          +S +++L
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 255 YLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLR-- 310
            LS   +          +    L  LNL++N +        Y +  L+ ++LS + L   
Sbjct: 272 DLSHGFVFSLNSRVFETLK--DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 311 -GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTL 369
             +       + YID   N+    I   T  F+ +L+     +N LT     ++    ++
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSI 383

Query: 370 SLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQG-TVPKSIANCKMLEVLNLGNNQFSD 427
             + LS N     +   +N     + L+ NRL+   +   +     L++L L  N+FS 
Sbjct: 384 PDIFLSGNKL--VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 70/337 (20%), Positives = 126/337 (37%), Gaps = 30/337 (8%)

Query: 22  HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLS 80
           H++G      +I    +N  +  +   +R L+L+        + S+    +  L  LNL+
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV--FSLNSRVFETLKDLKVLNLA 298

Query: 81  DAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRS 140
                         +  L  L+ S+N     + S  +  L  + Y  L  N +   I   
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQ 356

Query: 141 MFEF------------PIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNN 188
            F+F             + +     ++  + LSGN+L  ++P           + LS N 
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLTA---NLIHLSENR 412

Query: 189 LHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN---- 244
           L     L  +L + +L  L L+ N  +     +  S +P LE L L    L+        
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 245 ---LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRF 301
               +  S LQ LYL+ N ++  +P  ++   +  L  L+L+ N L           L  
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLN-SLPPGVFS-HLTALRGLSLNSNRLTVLSHNDLPANLEI 530

Query: 302 IDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADT 338
           +D+S +QL      +  +L  +D ++N F       T
Sbjct: 531 LDISRNQLLAPNPDVFVSLSVLDITHNKFICECELST 567

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (313), Expect = 5e-31
 Identities = 90/457 (19%), Positives = 151/457 (33%), Gaps = 58/457 (12%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLSDAGF 84
           LDLS   I   IE+ A   SL +L +L L         +     + +SSL  L   +   
Sbjct: 57  LDLSRCEIQT-IEDGA-YQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNL 112

Query: 85  AGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF 144
           A      I  +  L  L+ + N          + +L NL +  LS N +  SI  +    
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV 171

Query: 145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL 204
               +       +LDLS N +   I    F+  +L  L L +N     V    I  L  L
Sbjct: 172 L---HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 205 A--------------------------------KLDLSYNSLAVDESSRNYSFSPMLELL 232
                                            +  L+Y    +D+    ++    +   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 233 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG 292
           +L S  +  + +       Q+L L   +           + +  L  L  + N       
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKF-----GQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 293 PYSIPALRFIDLSSHQLR-----GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRY 347
              +P+L F+DLS + L              +L Y+D S N   + + ++    + +L +
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG-LEQLEH 400

Query: 348 FCAANNGLTGIIPAS-LCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGT 404
               ++ L  +   S   +   L  LD+S+       +   N L  L+ L + GN  Q  
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 405 VPKSI-ANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
               I    + L  L+L   Q     P       SL 
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  119 bits (301), Expect = 2e-29
 Identities = 73/437 (16%), Positives = 132/437 (30%), Gaps = 46/437 (10%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLS----- 80
           L     +++        +  L  L+ LN+A       ++P   +N+++L +L+LS     
Sbjct: 105 LVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 81  ---DAGFAG-------------------HIPLQISSMARLVALDFSFNQFSGSISSIRWE 118
                                        I        RL  L    N  S ++     +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 119 HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LK 177
            L  L    L             F+        +  ++   L+         + +F  L 
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 178 KLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 237
            ++S  L S  +             +L  ++  +                 L+ L   S 
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-------TLKLKSLKRLTFTSN 335

Query: 238 KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ-GPYSI 296
           K     +  +   L++L LS N +S +            L  L+LS N ++        +
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 297 PALRFIDLSSHQLR----GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAAN 352
             L  +D     L+     ++     NLIY+D S+ +          N +  L     A 
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAG 454

Query: 353 NGLTGIIPA-SLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSI 409
           N                L+ LDLS     + S    N L  LQ L++  N+L+       
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 410 ANCKMLEVLNLGNNQFS 426
                L+ + L  N + 
Sbjct: 515 DRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  111 bits (280), Expect = 1e-26
 Identities = 66/391 (16%), Positives = 132/391 (33%), Gaps = 51/391 (13%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           LDLS   ++     A   F    L  L L     +   + + +  ++ L    L    F 
Sbjct: 182 LDLSLNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 86  GHIPLQISSMARLVAL--------DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSI 137
               L+    + L  L          ++  +        +  L N+    L   ++    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-- 296

Query: 138 PRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDK 197
                   +   + +     L+L   +          +LK L  L  +SN          
Sbjct: 297 --------VKDFSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGN---AFS 342

Query: 198 ILNLGNLAKLDLSYNSLAVDESSRNYSFS-PMLELLNLASCKLREIP-NLKNQSQLQYLY 255
            ++L +L  LDLS N L+         F    L+ L+L+   +  +  N     QL++L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQ 315
              + + + +  +   +S+  L  L++SH                F  LS          
Sbjct: 403 FQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTR------VAFNGIFNGLS---------- 445

Query: 316 LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLS 375
              +L  +  + N+F  +   D    +  L +   +   L  + P +  + ++L +L+++
Sbjct: 446 ---SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 376 NNSFMKKSDAFLNCL--LQTLDLNGNRLQGT 404
           +N      D   + L  LQ + L+ N    +
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (267), Expect = 5e-25
 Identities = 68/389 (17%), Positives = 115/389 (29%), Gaps = 44/389 (11%)

Query: 62  TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
            +IP  L    S   L+LS             S   L  LD S  +   +I    ++ L 
Sbjct: 20  YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76

Query: 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181
           +L   +L+ N +  S+    F          S+L  L      L       +  LK L  
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGL-------SSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL------LNLA 235
           L ++ N +      +   NL NL  LDLS N +   +S        + ++      L+L+
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI---QSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 236 SCKLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPY 294
              +  I      + +L  L L  N  S  +     +  + GL    L            
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLE 244

Query: 295 SIPALRFIDLSSHQLRGN--------------IHQLPNNLIYIDFSNNNFTSSIPADTGN 340
                    L +  +                 +     N+      +            +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FS 301

Query: 341 FMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNR 400
           +    ++    N          L +   L  L  ++N             L+ LDL+ N 
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 401 LQ--GTVPKSIANCKMLEVLNLGNNQFSD 427
           L   G   +S      L+ L+L  N    
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 58/233 (24%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD--AGFAGHIPLQISSMARLVALD 102
            L  L+ L     + N         ++ SL +L+LS     F G           L  LD
Sbjct: 323 KLKSLKRLTF---TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 103 FSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSG 162
            SFN    ++SS  +  L  L +     ++L      S+F        S   L  LD+S 
Sbjct: 380 LSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF-------LSLRNLIYLDISH 430

Query: 163 NRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSR 221
              R      +F  L  L  L ++ N+       D    L NL  LDLS   L   E   
Sbjct: 431 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLS 486

Query: 222 NYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIW 270
             +F+    L++LN+AS +L+ +P+      + LQ ++L  N      P   +
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (309), Expect = 7e-31
 Identities = 78/362 (21%), Positives = 136/362 (37%), Gaps = 46/362 (12%)

Query: 72  SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN 131
           +    +      F   +P  I +      LD   N+   +++   +    +L    L++N
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGIPT--ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN 66

Query: 132 SLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLH 190
            +  ++    F        +   L TL L  NRL+  IP+ VF  L  LT L +S N + 
Sbjct: 67  IV-SAVEPGAF-------NNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

Query: 191 GTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LK 246
             +      +L NL  L++  N L         +FS +  LE L L  C L  IP   L 
Sbjct: 118 -ILLDYMFQDLYNLKSLEVGDNDLVYISHR---AFSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 247 NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSS 306
           +   L  L L    I+  I ++ ++  +  L  L +SH   +      ++       L  
Sbjct: 174 HLHGLIVLRLRHLNIN-AIRDYSFK-RLYRLKVLEISHWPYLD-----TMTPNCLYGL-- 224

Query: 307 HQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNA 366
                       NL  +  ++ N T+ +P      +  LR+   + N ++ I  + L   
Sbjct: 225 ------------NLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 367 TTLSLLDLSNNSFMK-KSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQ 424
             L  + L        +  AF     L+ L+++GN+L         +   LE L L +N 
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

Query: 425 FS 426
            +
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (268), Expect = 2e-25
 Identities = 57/290 (19%), Positives = 109/290 (37%), Gaps = 35/290 (12%)

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
            +     R   ++P  +    +   L L  N +  T+  D+  +  +L +L+L+ N +  
Sbjct: 15  AVLCHRKRFV-AVPEGIPT--ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV-- 68

Query: 217 DESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRV 272
             +    +F+ +  L  L L S +L+ IP       S L  L +SEN+I   + +++++ 
Sbjct: 69  -SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ- 125

Query: 273 SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTS 332
            +  L  L +  N LV       I    F  L+             +L  +     N TS
Sbjct: 126 DLYNLKSLEVGDNDLV------YISHRAFSGLN-------------SLEQLTLEKCNLTS 166

Query: 333 SIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK--SDAFLNCL 390
            IP +  + +  L      +  +  I   S      L +L++S+  ++     +      
Sbjct: 167 -IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 391 LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           L +L +    L      ++ +   L  LNL  N  S      L++   L 
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 2e-25
 Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 34/291 (11%)

Query: 157 TLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLA 215
            LDL  NR++ ++    F     L  L L+ N +   V+     NL NL  L L  N L 
Sbjct: 36  LLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRL- 92

Query: 216 VDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWR 271
             +      F+ +  L  L+++  K+  + +   ++   L+ L + +N +          
Sbjct: 93  --KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 272 VSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFT 331
           ++   L  L L    L       SIP      L               LI +   + N  
Sbjct: 151 LN--SLEQLTLEKCNLT------SIPTEALSHLH-------------GLIVLRLRHLNIN 189

Query: 332 SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFLNC- 389
           + I   +   + RL+    ++      +  +      L+ L +++ +       A  +  
Sbjct: 190 A-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248

Query: 390 LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
            L+ L+L+ N +       +     L+ + L   Q +   P        L 
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (252), Expect = 3e-23
 Identities = 77/347 (22%), Positives = 128/347 (36%), Gaps = 49/347 (14%)

Query: 10  CDWSG--VDCDEAG----------HVIGLDLSTESISGGIENAASLFSLHYLRSLNLART 57
           C      V C                  LDL    I     N     S  +L  L L   
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK--TLNQDEFASFPHLEELEL--- 63

Query: 58  SFNG-TQIPSK-LANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDFSFNQFSGSISS 114
           + N  + +      N+ +L  L L        IPL + + ++ L  LD S N+    +  
Sbjct: 64  NENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLD 121

Query: 115 IRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF 174
             ++ L NL    + DN L   I    F       +  ++L+ L L    L  SIP    
Sbjct: 122 YMFQDLYNLKSLEVGDNDLV-YISHRAF-------SGLNSLEQLTLEKCNLT-SIPTEAL 172

Query: 175 E-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN 233
             L  L  L L   N++  ++      L  L  L++S+    +D  + N  +   L  L+
Sbjct: 173 SHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPY-LDTMTPNCLYGLNLTSLS 230

Query: 234 LASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG-- 289
           +  C L  +P   +++   L++L LS N IS  I   +    ++ L  + L    L    
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLH-ELLRLQEIQLVGGQLAVVE 288

Query: 290 ---FQGPYSIPALRFIDLSSHQLR---GNIHQLPNNLIYIDFSNNNF 330
              F+G   +  LR +++S +QL     ++     NL  +   +N  
Sbjct: 289 PYAFRG---LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 7e-19
 Identities = 64/292 (21%), Positives = 109/292 (37%), Gaps = 48/292 (16%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLS---- 80
           L+L+   +S  +E  A   +L  LR+L L         IP      +S+LT L++S    
Sbjct: 61  LELNENIVSA-VEPGA-FNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKI 116

Query: 81  ----DAGFAGHIPLQI----------------SSMARLVALDFSFNQFSGSISSIRWEHL 120
               D  F     L+                 S +  L  L       + SI +    HL
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175

Query: 121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180
             L+   L   ++N +I    F+           L  L++S      ++  +      LT
Sbjct: 176 HGLIVLRLRHLNIN-AIRDYSFK-------RLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCK 238
           SL ++  NL   V    + +L  L  L+LSYN +    +        +  L+ + L   +
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI---STIEGSMLHELLRLQEIQLVGGQ 283

Query: 239 LREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLV 288
           L  +     +  + L+ L +S NQ++  +   ++  SV  L  L L  N L 
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFH-SVGNLETLILDSNPLA 333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (301), Expect = 7e-30
 Identities = 80/372 (21%), Positives = 134/372 (36%), Gaps = 59/372 (15%)

Query: 49  LRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQF 108
              L L       + +P        L  L  S       +P    S+  L+  + +    
Sbjct: 73  AHELELNNLGL--SSLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

Query: 109 SGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS 168
           S             L Y  +S+N L         + P   N+S   L  +D+  N L+  
Sbjct: 127 SDLPP--------LLEYLGVSNNQLE--------KLPELQNSSF--LKIIDVDNNSLK-K 167

Query: 169 IPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL-AVDESSRNYSFSP 227
           +P        L  +   +N L    +L ++ NL  L  +    NSL  + +   +     
Sbjct: 168 LPD---LPPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKLPDLPLS----- 216

Query: 228 MLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLL 287
            LE +   +  L E+P L+N   L  +Y   N +   +P+         L  LN+  N L
Sbjct: 217 -LESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLP-----PSLEALNVRDNYL 269

Query: 288 VGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRY 347
                P    +L F+D+S +     + +LP NL Y++ S+N   S       +  P L  
Sbjct: 270 TDL--PELPQSLTFLDVSENIFS-GLSELPPNLYYLNASSNEIRSLC-----DLPPSLEE 321

Query: 348 FCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPK 407
              +NN L   +PA       L  L  S N   +  +   N  L+ L +  N L+   P 
Sbjct: 322 LNVSNNKLI-ELPALPPR---LERLIASFNHLAEVPELPQN--LKQLHVEYNPLR-EFPD 374

Query: 408 SIANCKMLEVLN 419
              + + L + +
Sbjct: 375 IPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (278), Expect = 9e-27
 Identities = 73/399 (18%), Positives = 146/399 (36%), Gaps = 70/399 (17%)

Query: 44  FSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103
            S  +L+      ++   T++P +  N+ S T    + + +  + P        +     
Sbjct: 8   VSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM----- 60

Query: 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN 163
                  ++S +R           L++  L+ S+P                L++L  S N
Sbjct: 61  -------AVSRLRDCLDRQAHELELNNLGLS-SLPELPPH-----------LESLVASCN 101

Query: 164 RLRGSIPVSVFELKKLTSLLLSSNNLHGT--------------VQLDKILNLGNLAKLDL 209
            L   +P     LK L     +   L                  +L ++ N   L  +D+
Sbjct: 102 SLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 160

Query: 210 SYNSL-AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNW 268
             NSL  + +   +      LE +   + +L E+P L+N   L  +Y   N +  ++P+ 
Sbjct: 161 DNNSLKKLPDLPPS------LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDL 213

Query: 269 IWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNN 328
                 + L  +   +N+L       ++P L  I   ++ L+  +  LP +L  ++  +N
Sbjct: 214 P-----LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDN 267

Query: 329 NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLN 388
             T  +P    +    L +   + N  +G+      N   L  L+ S+N      D   +
Sbjct: 268 YLTD-LPELPQS----LTFLDVSENIFSGL-SELPPN---LYYLNASSNEIRSLCDLPPS 318

Query: 389 CLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
             L+ L+++ N+L   +P        LE L    N  ++
Sbjct: 319 --LEELNVSNNKLI-ELPALPPR---LERLIASFNHLAE 351

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (252), Expect = 2e-23
 Identities = 80/412 (19%), Positives = 140/412 (33%), Gaps = 77/412 (18%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS 104
              +L SL  +  S   T++P    ++ SL   N +    +   PL       L  L  S
Sbjct: 89  LPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVS 139

Query: 105 FNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMF-------------EFPIFSNAS 151
            NQ    +  ++  +   L    + +NSL   +P                 E P   N  
Sbjct: 140 NNQLE-KLPELQ--NSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLP 195

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
              L  +    N L+  +P        L S++  +N L    +L ++ NL  L  +    
Sbjct: 196 F--LTAIYADNNSLK-KLPD---LPLSLESIVAGNNILE---ELPELQNLPFLTTIYADN 246

Query: 212 NSL-AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW 270
           N L  + +   +      LE LN+    L ++P L     L +L +SEN  S  +     
Sbjct: 247 NLLKTLPDLPPS------LEALNVRDNYLTDLPELP--QSLTFLDVSENIFSG-LSELP- 296

Query: 271 RVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNF 330
                 L+ LN S N +         P+L  +++S+++L   +  LP  L  +  S N+ 
Sbjct: 297 ----PNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHL 349

Query: 331 TSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSL----------------LDL 374
              +P    N    L+      N L    P    +   L +                L +
Sbjct: 350 AE-VPELPQN----LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403

Query: 375 SNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
             N   +  D   +  ++ L +N  R+      +      LE     ++   
Sbjct: 404 ETNPLREFPDIPES--VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 58/279 (20%), Positives = 94/279 (33%), Gaps = 39/279 (13%)

Query: 169 IPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM 228
           I         L   L  S+NL  T    +  N+ +  +   +++    +    N     M
Sbjct: 3   INPRNVSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 229 ------------LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVG 276
                          L L +  L  +P L     L+ L  S N ++ E+P     +    
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELP--PHLESLVASCNSLT-ELPELPQSLKS-- 115

Query: 277 LHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSI 334
           L   N +   L         P L ++ +S++QL     +      L  ID  NN+    +
Sbjct: 116 LLVDNNNLKAL-----SDLPPLLEYLGVSNNQLEKLPELQNSS-FLKIIDVDNNSLK-KL 168

Query: 335 PADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTL 394
           P    +  P L +  A NN L  +    L N   L+ +   NNS  K  D  L+  L+++
Sbjct: 169 P----DLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLS--LESI 220

Query: 395 DLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWL 433
               N L       + N   L  +   NN      P   
Sbjct: 221 VAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLP 256

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  114 bits (287), Expect = 3e-28
 Identities = 68/370 (18%), Positives = 121/370 (32%), Gaps = 56/370 (15%)

Query: 64  IPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL 123
           I S L        +++       +   +  ++     + F  +                 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-------------- 58

Query: 124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSL 182
                        +P ++         S   ++ L+L+  ++   I    F     +  L
Sbjct: 59  ------------KLPAALL-------DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKL 98

Query: 183 LLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLR 240
            +  N +   +      N+  L  L L  N L    S     F   P L  L++++  L 
Sbjct: 99  YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL---SSLPRGIFHNTPKLTTLSMSNNNLE 154

Query: 241 EIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA 298
            I +   +  + LQ L LS N+++    + I       L   N+S+NLL     P    A
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-----SLFHANVSYNLLSTLAIP---IA 206

Query: 299 LRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358
           +  +D S + +      +   L  +   +NN T           P L     + N L  I
Sbjct: 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKI 263

Query: 359 IPASLCNATTLSLLDLSNNSFMKKSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEV 417
           +         L  L +SNN  +  +        L+ LDL+ N L   V ++      LE 
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 418 LNLGNNQFSD 427
           L L +N    
Sbjct: 323 LYLDHNSIVT 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 3e-27
 Identities = 75/380 (19%), Positives = 139/380 (36%), Gaps = 54/380 (14%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLSDAGF 84
            D+  +  +  +       +L+  + +    ++    ++P+  L +   +  LNL+D   
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 81

Query: 85  AGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF 144
                   +    +  L   FN     +    ++++  L   VL  N L+ S+PR +F  
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIF-- 137

Query: 145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGN 203
                 ++  L TL +S N L   I    F+    L +L LSSN L   V L     + +
Sbjct: 138 -----HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPS 187

Query: 204 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 263
           L   ++SYN L         +    +E L+ +   +  +    N   L  L L  N ++ 
Sbjct: 188 LFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNLT- 239

Query: 264 EIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYI 323
           +       ++  GL  ++LS+N L        I    F+ +               L  +
Sbjct: 240 DTAWL---LNYPGLVEVDLSYNELE------KIMYHPFVKMQ-------------RLERL 277

Query: 324 DFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-K 382
             SNN    ++       +P L+    ++N L   +  +      L  L L +NS +  K
Sbjct: 278 YISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 383 SDAFLNCLLQTLDLNGNRLQ 402
                   L+ L L+ N   
Sbjct: 335 LSTHHT--LKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 52/281 (18%), Positives = 91/281 (32%), Gaps = 51/281 (18%)

Query: 168 SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSP 227
            I  ++        + +           +  + L N   +    +++             
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFED-ITLNNQKIVTFKNSTM---RKLPAALLDS 67

Query: 228 M--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 283
              +ELLNL   ++ EI          +Q LY+  N I   +P  +++ +V  L  L L 
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ-NVPLLTVLVLE 125

Query: 284 HNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMP 343
            N L       S+P   F +                L  +  SNNN    I  DT     
Sbjct: 126 RNDLS------SLPRGIFHNTP-------------KLTTLSMSNNNLE-RIEDDTFQATT 165

Query: 344 RLRYFCAANNGLTGIIPASLCNATTLSL----------------LDLSNNSFMK-KSDAF 386
            L+    ++N LT +  + + +    ++                LD S+NS    +    
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225

Query: 387 LNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
           +   L  L L  N L  T    + N   L  ++L  N+   
Sbjct: 226 VE--LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEK 262

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (286), Expect = 2e-27
 Identities = 68/339 (20%), Positives = 125/339 (36%), Gaps = 75/339 (22%)

Query: 90  LQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN 149
           ++         L+   +     ++++      ++   V+ DN+L  S+P           
Sbjct: 34  MRACLNNGNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLT-SLPALP-------- 80

Query: 150 ASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDL 209
                L TL++SGN+L  S+PV    L +L+       +L              L KL +
Sbjct: 81  ---PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA--------LPSGLCKLWI 128

Query: 210 SYNSL-AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNW 268
             N L ++            L+ L+++  +L  +P L   S+L  L+   NQ++  +P  
Sbjct: 129 FGNQLTSLPVLPPG------LQELSVSDNQLASLPAL--PSELCKLWAYNNQLT-SLPML 179

Query: 269 IWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNN 328
                  GL  L++S N L     P     L  +   +++L  ++  LP+ L  +  S N
Sbjct: 180 P-----SGLQELSVSDNQLASL--PTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGN 231

Query: 329 NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLN 388
             TS +P         L+    + N LT  +P                            
Sbjct: 232 RLTS-LPVLPSE----LKELMVSGNRLT-SLPMLPSG----------------------- 262

Query: 389 CLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
             L +L +  N+L   +P+S+ +      +NL  N  S+
Sbjct: 263 --LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.6 bits (222), Expect = 3e-19
 Identities = 69/335 (20%), Positives = 110/335 (32%), Gaps = 57/335 (17%)

Query: 49  LRSLNLARTSFNG-TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQ 107
           LR+L +   S N  T +P     +  L+  +        H+P   S    L  L    NQ
Sbjct: 83  LRTLEV---SGNQLTSLPVLPPGLLELSIFSNPLT----HLPALPSG---LCKLWIFGNQ 132

Query: 108 FSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG 167
            + S+          L    +SDN L  S+P           A  S L  L    N+L  
Sbjct: 133 LT-SLP----VLPPGLQELSVSDNQLA-SLP-----------ALPSELCKLWAYNNQLT- 174

Query: 168 SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL-AVDESSRNYSFS 226
           S+P+       L  L +S N L     L        L KL    N L ++          
Sbjct: 175 SLPM---LPSGLQELSVSDNQLA---SLPT--LPSELYKLWAYNNRLTSLPALPSG---- 222

Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
             L+ L ++  +L  +P L   S+L+ L +S N++   +P         GL  L++  N 
Sbjct: 223 --LKELIVSGNRLTSLPVLP--SELKELMVSGNRL-TSLPMLPS-----GLLSLSVYRNQ 272

Query: 287 LVGFQGPYSI---PALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMP 343
           L     P S+    +   ++L  + L     Q    +      +        A       
Sbjct: 273 LTRL--PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 344 RLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
                 AA + L          A    +    +N+
Sbjct: 331 TRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 5e-18
 Identities = 51/257 (19%), Positives = 90/257 (35%), Gaps = 34/257 (13%)

Query: 172 SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV--DESSRNYSFSPML 229
           +V+   +  +    S      VQ  +       A L++  + L    D    +      +
Sbjct: 10  AVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH------I 63

Query: 230 ELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG 289
             L +    L  +P      +L+ L +S NQ++  +P       ++ L   +     L  
Sbjct: 64  TTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPVLPPG--LLELSIFSNPLTHL-- 116

Query: 290 FQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFC 349
              P     L  + +  +QL  ++  LP  L  +  S+N    S+PA        L    
Sbjct: 117 ---PALPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLA-SLPALPSE----LCKLW 167

Query: 350 AANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSI 409
           A NN LT  +P        L  L +S+N             L  L    NRL  ++P   
Sbjct: 168 AYNNQLTS-LPMLPSG---LQELSVSDNQLASLPTLPSE--LYKLWAYNNRLT-SLPALP 220

Query: 410 ANCKMLEVLNLGNNQFS 426
           +    L+ L +  N+ +
Sbjct: 221 SG---LKELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 51/286 (17%), Positives = 90/286 (31%), Gaps = 49/286 (17%)

Query: 49  LRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQF 108
           + +L +   +   T +P+       L  L +S       +P+    +  L          
Sbjct: 63  ITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116

Query: 109 SGSISSIRW------------EHLLNLVYAVLSDNSLNGSIPRSMFEFP---IFSN---- 149
               S +                   L    +SDN L  S+P    E      ++N    
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTS 175

Query: 150 --ASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL------ 201
                S L  L +S N+L  S+P    EL KL +      +L       K L +      
Sbjct: 176 LPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT 234

Query: 202 ------GNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIP-NLKNQSQLQY 253
                   L +L +S N L ++            L  L++   +L  +P +L + S    
Sbjct: 235 SLPVLPSELKELMVSGNRLTSLPMLPSG------LLSLSVYRNQLTRLPESLIHLSSETT 288

Query: 254 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPAL 299
           + L  N +S      +  ++    +   +    + G   P    AL
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (277), Expect = 1e-26
 Identities = 49/392 (12%), Positives = 120/392 (30%), Gaps = 34/392 (8%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103
           + +  +   +  +S    Q  +    +  ++  L+LS    +      ++   +L  L+ 
Sbjct: 8   NGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN 163
           S N        +    L  L    L++N +   +                +++TL  + N
Sbjct: 66  SSNVLY-ETLDLE--SLSTLRTLDLNNNYVQ-ELLVG------------PSIETLHAANN 109

Query: 164 RLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNY 223
            +   +  S    +   ++ L++N +   ++         +  LDL  N +     +   
Sbjct: 110 NIS-RVSCSRG--QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 224 SFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 283
           + S  LE LNL    + ++      ++L+ L LS N+++  +       +  G+  ++L 
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAA--GVTWISLR 222

Query: 284 HNLLVGFQGP-YSIPALRFIDLSSHQLR-GNIHQLPNNLIYIDFSNNNFTSSIPADTGNF 341
           +N LV  +        L   DL  +    G +    +    +          +       
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 342 MPRLRYFCAANNGLTGIIPASLCNATTL-----SLLDLSNNSFMKKSDAFLNCL-LQTLD 395
                           +          L     +LL    +   +      N    + +D
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 396 LNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
               + +  + +     +    L        +
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.8 bits (233), Expect = 7e-21
 Identities = 59/376 (15%), Positives = 110/376 (29%), Gaps = 45/376 (11%)

Query: 40  AASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV 99
           AA L     L  LNL   S N       L ++S+L  L+L++         ++     + 
Sbjct: 51  AADLAPFTKLELLNL---SSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIE 102

Query: 100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLD 159
            L  + N     IS +            L++N +   +               S +  LD
Sbjct: 103 TLHAANNN----ISRVSCSRGQGKKNIYLANNKIT-MLRDLDE-------GCRSRVQYLD 150

Query: 160 LSGNRLRGSIPVSVF--ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVD 217
           L  N +  ++  +        L  L L  N ++    +   +    L  LDLS N L   
Sbjct: 151 LKLNEID-TVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL--- 203

Query: 218 ESSRNYSFSPM--LELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSV 274
            +     F     +  ++L + KL  I   L+    L++  L  N          +    
Sbjct: 204 -AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKN 261

Query: 275 VGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNN------ 328
             +  +       +  Q              ++          + LI +    +      
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 329 -NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL 387
            + T  +  +  N   R R   A       +I            L+    +  ++     
Sbjct: 322 GSETERLECERENQ-ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS--- 377

Query: 388 NCLLQTLDLNGNRLQG 403
           N      +L+G   Q 
Sbjct: 378 NGRRAHAELDGTLQQA 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 18/224 (8%), Positives = 59/224 (26%), Gaps = 9/224 (4%)

Query: 41  ASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100
            +L     L   +L    F+   +    +    +  +                       
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT--VKKLTGQNEEECTVPTL 288

Query: 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDL 160
             +           +       L+     +++L  S   S  E       + +    +D 
Sbjct: 289 GHYGAYC----CEDLPAPFADRLIALKRKEHALL-SGQGSETERLECERENQARQREIDA 343

Query: 161 SGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDES 219
              + R ++   V    +   +L      L   V   +  +      L  +   + +  +
Sbjct: 344 LKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA 402

Query: 220 SRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 263
           +   S   +L  +     ++         + ++   + +++ ++
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (279), Expect = 1e-26
 Identities = 68/370 (18%), Positives = 121/370 (32%), Gaps = 56/370 (15%)

Query: 64  IPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL 123
           I S L        +++       +   +  ++     + F  +                 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-------------- 64

Query: 124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSL 182
                        +P ++         S   ++ L+L+  ++   I    F     +  L
Sbjct: 65  ------------KLPAALL-------DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKL 104

Query: 183 LLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLR 240
            +  N +   +      N+  L  L L  N L    S     F   P L  L++++  L 
Sbjct: 105 YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL---SSLPRGIFHNTPKLTTLSMSNNNLE 160

Query: 241 EIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA 298
            I +   +  + LQ L LS N+++    + I       L   N+S+NLL     P    A
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-----SLFHANVSYNLLSTLAIP---IA 212

Query: 299 LRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358
           +  +D S + +      +   L  +   +NN T           P L     + N L  I
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKI 269

Query: 359 IPASLCNATTLSLLDLSNNSFMKKSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEV 417
           +         L  L +SNN  +  +        L+ LDL+ N L   V ++      LE 
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

Query: 418 LNLGNNQFSD 427
           L L +N    
Sbjct: 329 LYLDHNSIVT 338

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.9 bits (241), Expect = 9e-22
 Identities = 74/352 (21%), Positives = 131/352 (37%), Gaps = 44/352 (12%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLSDAGF 84
            D+  +  +  +       +L+  + +    ++    ++P+  L +   +  LNL+D   
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 87

Query: 85  AGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF 144
                   +    +  L   FN     +    ++++  L   VL  N L+ S+PR +F  
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIF-- 143

Query: 145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLH------------- 190
                 ++  L TL +S N L   I    F+    L +L LSSN L              
Sbjct: 144 -----HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197

Query: 191 --GTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQ 248
                 L  +     + +LD S+NS+ V     N      L +L L    L +   L N 
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWLLNY 253

Query: 249 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP-YSIPALRFIDLSSH 307
             L  + LS N++  +I    +   +  L  L +S+N LV        IP L+ +DLS +
Sbjct: 254 PGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311

Query: 308 QLR---GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT 356
            L     N  Q    L  +   +N+   ++   T      L+    ++N   
Sbjct: 312 HLLHVERNQPQFD-RLENLYLDHNSIV-TLKLST---HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 52/280 (18%), Positives = 93/280 (33%), Gaps = 51/280 (18%)

Query: 168 SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSP 227
            I  ++        + +           +  + L N   +    +++    ++       
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFED-ITLNNQKIVTFKNSTMRKLPAA---LLDS 73

Query: 228 M--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 283
              +ELLNL   ++ EI          +Q LY+  N I   +P  +++ +V  L  L L 
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ-NVPLLTVLVLE 131

Query: 284 HNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMP 343
            N L       S+P   F +                L  +  SNNN    I  DT     
Sbjct: 132 RNDLS------SLPRGIFHNTP-------------KLTTLSMSNNNLE-RIEDDTFQATT 171

Query: 344 RLRYFCAANNGLTGIIPASLCNATTLSL----------------LDLSNNSFMK-KSDAF 386
            L+    ++N LT +  + + +    ++                LD S+NS    +    
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231

Query: 387 LNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
           +   L  L L  N L  T    + N   L  ++L  N+  
Sbjct: 232 VE--LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (269), Expect = 3e-26
 Identities = 58/311 (18%), Positives = 109/311 (35%), Gaps = 39/311 (12%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
           SS  + L   G+         + + ++  +   +  +        +  N  N      + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS-----AWRQANSNNPQIETRTG 65

Query: 212 NSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIW 270
            +L         +  P    L L S  L + P+     S LQ++ +    +  E+P+ + 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL-MELPDTMQ 124

Query: 271 RVSVVGLHCLNLSHNLLVGFQGPYSI---PALRFIDLSSHQLRGNIHQLPN--------- 318
           + +  GL  L L+ N L     P SI     LR + + +      + +LP          
Sbjct: 125 QFA--GLETLTLARNPLRAL--PASIASLNRLRELSIRACP---ELTELPEPLASTDASG 177

Query: 319 ------NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL 372
                 NL  +        S +PA   N +  L+     N+ L+ +   ++ +   L  L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIAN-LQNLKSLKIRNSPLSAL-GPAIHHLPKLEEL 234

Query: 373 DLSNNSFMKK-SDAFLNCL-LQTLDL-NGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKF 429
           DL   + ++     F     L+ L L + + L  T+P  I     LE L+L       + 
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 430 PCWLYDAPSLH 440
           P  +   P+  
Sbjct: 294 PSLIAQLPANC 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.3 bits (243), Expect = 1e-22
 Identities = 57/381 (14%), Positives = 107/381 (28%), Gaps = 74/381 (19%)

Query: 70  NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLS 129
           + S    L    +         +S   R    D +    +         +  N      +
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ-----ANSNNPQIETRT 64

Query: 130 DNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNL 189
             +L  +            +A+      L+L    L    P   F L  L  + + +  L
Sbjct: 65  GRALK-ATADL------LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 190 HGTVQL-DKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKN 247
              ++L D +     L  L L+ N                          LR +P  + +
Sbjct: 117 ---MELPDTMQQFAGLETLTLARN-------------------------PLRALPASIAS 148

Query: 248 QSQLQYLYLSENQISREIPNWIWRVSVVG-------LHCLNLSHNLLVGFQGPYSIPALR 300
            ++L+ L +       E+P  +      G       L  L L    +     P SI  L+
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQ 206

Query: 301 FIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360
                             NL  +   N+  ++ +     + +P+L              P
Sbjct: 207 ------------------NLKSLKIRNSPLSA-LGPAIHH-LPKLEELDLRGCTALRNYP 246

Query: 361 ASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVL 418
                   L  L L + S +      ++ L  L+ LDL G      +P  IA      ++
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 419 NLGNNQFSDKFPCWLYDAPSL 439
            +  +  +          P+ 
Sbjct: 307 LVPPHLQAQLDQHRPVARPAE 327

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (269), Expect = 1e-25
 Identities = 76/380 (20%), Positives = 132/380 (34%), Gaps = 37/380 (9%)

Query: 62  TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
            Q+P   A++    Y++LS    A       S +  L  L          I +  +  L 
Sbjct: 23  HQVPELPAHV---NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS-IPVSVFE-LKKL 179
           +L+   L  N     +    F          + L+ L L+   L G+ +  + F+ L  L
Sbjct: 80  SLIILKLDYNQF-LQLETGAFN-------GLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131

Query: 180 TSLLLSSNNLHGTVQLDKIL-NLGNLAKLDLSYNSLAVDESSRNYSF-SPMLELLNLASC 237
             L+L  NN+   +Q      N+     LDL++N +         +F      LL L+S 
Sbjct: 132 EMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190

Query: 238 KLREIPNLKNQS----------QLQYLYLSENQISREIPNWIW-RVSVVGLHCLNLSHNL 286
            L+++                  +  L LS N     +    +  ++   +  L LS++ 
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 287 LVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLR 346
            +G     S     F D  +   +G      + +   D S +   + +     +    L 
Sbjct: 251 NMG----SSFGHTNFKDPDNFTFKGLE---ASGVKTCDLSKSKIFA-LLKSVFSHFTDLE 302

Query: 347 YFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGT 404
               A N +  I   +    T L  L+LS N            L  L+ LDL+ N ++  
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362

Query: 405 VPKSIANCKMLEVLNLGNNQ 424
             +S      L+ L L  NQ
Sbjct: 363 GDQSFLGLPNLKELALDTNQ 382

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 52/297 (17%), Positives = 105/297 (35%), Gaps = 41/297 (13%)

Query: 155 LDTLDLSGNRLRGSIPVSVF-ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNS 213
           ++ +DLS N +   +  + F  L+ L  L +        ++ +    L +L  L L YN 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 214 LAVDESSRNYSFSPM--LELLNLASCKLRE--IPN--LKNQSQLQYLYLSENQISREIPN 267
                     +F+ +  LE+L L  C L    +     K  + L+ L L +N I +  P 
Sbjct: 91  F---LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 268 WIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSN 327
             +  ++   H L+L+ N +       SI     ++            L  + I +   N
Sbjct: 148 SFFL-NMRRFHVLDLTFNKVK------SICEEDLLNFQGKHFT----LLRLSSITLQDMN 196

Query: 328 NNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL-------------DL 374
             +              +     + NG    +     +A   + +               
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 375 SNNSFMKKSDAFLNCL----LQTLDLNGNRLQGTVPKSI-ANCKMLEVLNLGNNQFS 426
            + +F    +     L    ++T DL+ +++   + KS+ ++   LE L L  N+ +
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.9 bits (192), Expect = 1e-15
 Identities = 80/416 (19%), Positives = 141/416 (33%), Gaps = 64/416 (15%)

Query: 10  CDWSGVDCDEAG---------HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFN 60
                  C   G         HV  +DLS  SI+  +   +    L  L+ L + + +  
Sbjct: 10  VIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE-LNETS-FSRLQDLQFLKVEQQTPG 67

Query: 61  GTQIPSKLANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDFSFNQF-SGSISSIRWE 118
                +    +SSL  L L    F   +     + +A L  L  +        +S   ++
Sbjct: 68  LVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126

Query: 119 HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF---E 175
            L +L   VL DN++    P S F        +      LDL+ N+++ SI        +
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFF-------LNMRRFHVLDLTFNKVK-SICEEDLLNFQ 178

Query: 176 LKKLTSLLLSSNNLH-------GTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM 228
            K  T L LSS  L        G  +        ++  LDLS N      + R +     
Sbjct: 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238

Query: 229 LELLNLA------------SCKLREIPNLK----NQSQLQYLYLSENQISREIPNWIWRV 272
            ++ +L                 ++  N        S ++   LS+++I   +   ++  
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFS- 296

Query: 273 SVVGLHCLNLSHNLLVG-----FQGPYSIPALRFIDLSSHQLR----GNIHQLPNNLIYI 323
               L  L L+ N +       F G   +  L  ++LS + L          L   L  +
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWG---LTHLLKLNLSQNFLGSIDSRMFENLDK-LEVL 352

Query: 324 DFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF 379
           D S N+  + +   +   +P L+      N L  +        T+L  + L  N +
Sbjct: 353 DLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 49  LRSLNLARTSFNGTQIPSKL-ANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDFSFN 106
           +++ +L+++      +   + ++ + L  L L+       I       +  L+ L+ S N
Sbjct: 277 VKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333

Query: 107 QFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR 166
               SI S  +E+L  L    LS N +  ++    F            L  L L  N+L+
Sbjct: 334 FLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFL-------GLPNLKELALDTNQLK 384

Query: 167 GSIPVSVFE-LKKLTSLLLSSNNLH 190
            S+P  +F+ L  L  + L +N   
Sbjct: 385 -SVPDGIFDRLTSLQKIWLHTNPWD 408

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (270), Expect = 2e-25
 Identities = 75/413 (18%), Positives = 151/413 (36%), Gaps = 53/413 (12%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQ-ISSMARLVALDF 103
            L  L+ LNL    +    + S   N+++L  L + +      I     + +  L  L+ 
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN 163
                  +  S   + + ++ +  L  +     +               S++  L+L   
Sbjct: 156 KALSLR-NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFA-------DILSSVRYLELRDT 206

Query: 164 RLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ----------LDKILNLGNLAKLDLSYNS 213
            L      S   + +++S +         +           L  IL L  +   D + N 
Sbjct: 207 NLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 214 LAVDESSRNYSFSPM-------LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISRE 264
           L     S +   S +       +  L++    L    +       +++ + +  +++   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324

Query: 265 IPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI-----PALRFIDLSSHQLR------GNI 313
           +P    +  +  L  L+LS NL+V      S      P+L+ + LS + LR        +
Sbjct: 325 VPCSFSQ-HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 314 HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLD 373
             L N L  +D S N F     +       ++R+   ++ G+  +     C   TL +LD
Sbjct: 384 LTLKN-LTSLDISRNTFHPMPDSCQW--PEKMRFLNLSSTGIRVV---KTCIPQTLEVLD 437

Query: 374 LSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
           +SNN+    S       LQ L ++ N+L+ T+P + +   +L V+ +  NQ  
Sbjct: 438 VSNNNLDSFSLFLPR--LQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (257), Expect = 9e-24
 Identities = 60/365 (16%), Positives = 119/365 (32%), Gaps = 22/365 (6%)

Query: 72  SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN 131
            +    +     F   IP  +++   + +LD SFN+ +  I         NL   +L  +
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS 60

Query: 132 SLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLH 190
            +N +I    F           +L+ LDLS N L  S+  S F  L  L  L L  N   
Sbjct: 61  RIN-TIEGDAFYSL-------GSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 191 GTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQ 248
                    NL NL  L +       +    +++    L  L + +  LR   +  LK+ 
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 249 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ 308
             + +L L  ++ +  +  +   +S   +  L L    L  F   +S   +  +     +
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILS--SVRYLELRDTNLARF--QFSPLPVDEVSSPMKK 227

Query: 309 LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATT 368
           L      L +           +   +     +            +    +         T
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 369 LSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
           +  L +             + L  ++ + +  +++         + K LE L+L  N   
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 427 DKFPC 431
           +++  
Sbjct: 348 EEYLK 352

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.3 bits (245), Expect = 3e-22
 Identities = 65/353 (18%), Positives = 116/353 (32%), Gaps = 25/353 (7%)

Query: 42  SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101
           SL S+  +  L L  +             +SS+ YL L D   A      +        +
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLL-EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225

Query: 102 DFSFNQ------FSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASS--- 152
                +       S +       ++L L      D +LNG    +  E  + S       
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN 212
             +  L +    L   +      L+K+  + + ++ +   V      +L +L  LDLS N
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344

Query: 213 SLAVDESSRNYSFS--PMLELLNLASCKLREIPN----LKNQSQLQYLYLSENQISREIP 266
            +  +    +      P L+ L L+   LR +      L     L  L +S N       
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 267 NWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFS 326
           +  W      +  LNLS   +   +       L  +D+S++ L  +       L  +  S
Sbjct: 405 SCQWPEK---MRFLNLSSTGIRVVK-TCIPQTLEVLDVSNNNLD-SFSLFLPRLQELYIS 459

Query: 327 NNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF 379
            N    ++P  +    P L     + N L  +        T+L  + L  N +
Sbjct: 460 RNKLK-TLPDAS--LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 47/278 (16%), Positives = 77/278 (27%), Gaps = 53/278 (19%)

Query: 151 SSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLS 210
           S  A    D        SIP  +     + SL LS N +   +    +    NL  L L 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 211 YNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNW 268
            +                         ++  I      +   L++L LS+N +S    +W
Sbjct: 59  SS-------------------------RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93

Query: 269 IWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNN 328
              +S   L  LNL  N           P L                   NL  +   N 
Sbjct: 94  FGPLS--SLKYLNLMGNPYQTLGVTSLFPNLT------------------NLQTLRIGNV 133

Query: 329 NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLN 388
              S I       +  L         L      SL +   +  L L  +      + F +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 389 CL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQ 424
            L  ++ L+L    L       +   ++   +     +
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 52/252 (20%), Positives = 93/252 (36%), Gaps = 21/252 (8%)

Query: 37  IENAASLFSLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSM 95
            +  + L  +  +    L    F      S   + +  +  + + ++            +
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 96  ARLVALDFSFNQFS--GSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSS 153
             L  LD S N        +S       +L   VLS N L  S+ ++          +  
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEIL-----LTLK 387

Query: 154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNS 213
            L +LD+S N     +P S    +K+  L LSS  +   V+         L  LD+S N+
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC---IPQTLEVLDVSNNN 442

Query: 214 LAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS 273
           L          F P L+ L ++  KL+ +P+      L  + +S NQ+   +P+ I+   
Sbjct: 443 L-----DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKS-VPDGIFD-R 495

Query: 274 VVGLHCLNLSHN 285
           +  L  + L  N
Sbjct: 496 LTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 27/218 (12%)

Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
               + +  S     IP+    + ++ L LS N+I+      +   +   L  L L  + 
Sbjct: 5   DASGVCDGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACA--NLQVLILKSSR 61

Query: 287 LVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLR 346
           +       +I    F  L              +L ++D S+N+ +S + +     +  L+
Sbjct: 62  IN------TIEGDAFYSLG-------------SLEHLDLSDNHLSS-LSSSWFGPLSSLK 101

Query: 347 YFCAANNGLTGIIPASLC-NATTLSLLDLS-NNSFMKKSDAFLNCL--LQTLDLNGNRLQ 402
           Y     N    +   SL  N T L  L +    +F +        L  L  L++    L+
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

Query: 403 GTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
               +S+ + + +  L L  ++ +     +     S+ 
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (251), Expect = 8e-24
 Identities = 58/285 (20%), Positives = 107/285 (37%), Gaps = 28/285 (9%)

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           L  +  S   L   +P  +        L L +N +   ++     NL NL  L L  N +
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 215 AVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIW 270
           +        +F+P+  LE L L+  +L+E+P    K    LQ L + EN+I++ +   ++
Sbjct: 89  SKISPG---AFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITK-VRKSVF 141

Query: 271 RVSVVGLHCLNLSHNLLVGFQGPYSI----PALRFIDLSSHQLRGNIHQLPNNLIYIDFS 326
              +  +  + L  N L               L +I ++   +      LP +L  +   
Sbjct: 142 N-GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200

Query: 327 NNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAF 386
            N  T  + A +   +  L     + N ++ +   SL N   L  L L+NN  +K     
Sbjct: 201 GNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259

Query: 387 LNC-LLQTLDLNGNRLQG------TVPKSIANCKMLEVLNLGNNQ 424
            +   +Q + L+ N +          P           ++L +N 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 70/363 (19%), Positives = 120/363 (33%), Gaps = 77/363 (21%)

Query: 73  SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNS 132
            L  +  SD G    +P  +        LD   N+ +  I    +++L NL   +L +N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 133 LNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGT 192
           ++  I    F       A    L+ L LS N+L+  +P  +   K L  L +  N +   
Sbjct: 88  IS-KISPGAF-------APLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-K 135

Query: 193 VQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLKNQSQ 250
           V+      L  +  ++L  N L         +F  M  L  + +A   +  IP       
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITTIPQ-GLPPS 193

Query: 251 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR 310
           L  L+L  N+I+                                 + A     L+     
Sbjct: 194 LTELHLDGNKIT--------------------------------KVDAASLKGLN----- 216

Query: 311 GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLS 370
                   NL  +  S N+ ++ +   +    P LR     NN L   +P  L +   + 
Sbjct: 217 --------NLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266

Query: 371 LLDLSNNSFMK-KSDAFLNCL-------LQTLDLNGNRLQGTV--PKSIANCKMLEVLNL 420
           ++ L NN+     S+ F              + L  N +Q     P +     +   + L
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326

Query: 421 GNN 423
           GN 
Sbjct: 327 GNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 68/322 (21%), Positives = 110/322 (34%), Gaps = 57/322 (17%)

Query: 10  CDWSGVDCDEAG----------HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSF 59
           C    V C + G              LDL    I+          +L  L +L L     
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT--EIKDGDFKNLKNLHTLIL---IN 85

Query: 60  NG-TQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSM-----ARLVALDFSFNQFSGSI 112
           N  ++I     A +  L  L LS          Q+  +       L  L    N+ +  +
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKN--------QLKELPEKMPKTLQELRVHENEIT-KV 136

Query: 113 SSIRWEHLLNLVYAVLSDNSL-NGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV 171
               +  L  ++   L  N L +  I    F            L  + ++   +  +IP 
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAF-------QGMKKLSYIRIADTNIT-TIPQ 188

Query: 172 SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS--PML 229
            +     LT L L  N +   V    +  L NLAKL LS+NS+    +  N S +  P L
Sbjct: 189 GLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI---SAVDNGSLANTPHL 242

Query: 230 ELLNLASCKLREIPN-LKNQSQLQYLYLSENQISR----EIPNWIWRVSVVGLHCLNLSH 284
             L+L + KL ++P  L +   +Q +YL  N IS     +     +         ++L  
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 285 NLLVGFQGPYSIPALRFIDLSS 306
           N +      + I    F  +  
Sbjct: 303 NPV----QYWEIQPSTFRCVYV 320

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 29/130 (22%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 299 LRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358
           LR +  S   L      LP +   +D  NN  T  I       +  L      NN ++ I
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKI 91

Query: 359 IPASLCNATTLSLLDLSNNSFMK-KSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEV 417
            P +      L  L LS N   +          LQ L ++ N +             + V
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIV 149

Query: 418 LNLGNNQFSD 427
           + LG N    
Sbjct: 150 VELGTNPLKS 159

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.7 bits (249), Expect = 9e-24
 Identities = 59/277 (21%), Positives = 104/277 (37%), Gaps = 31/277 (11%)

Query: 156 DTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLA 215
             +  +   L  S+P  +      T L L SN L  ++       L  L KL LS N L+
Sbjct: 10  TEIRCNSKGLT-SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 216 VDESSRNYSFS-PMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVS 273
                    F    L+ L+L+   +  + +      QL++L    + + + +  +   +S
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLS 124

Query: 274 VVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSS 333
           +  L  L++SH                F  LS             +L  +  + N+F  +
Sbjct: 125 LRNLIYLDISHTHTR------VAFNGIFNGLS-------------SLEVLKMAGNSFQEN 165

Query: 334 IPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--L 391
              D    +  L +   +   L  + P +  + ++L +L++S+N+F         CL  L
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 392 QTLDLNGNRLQGTVPKSI--ANCKMLEVLNLGNNQFS 426
           Q LD + N +  T  K         L  LNL  N F+
Sbjct: 226 QVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 1e-22
 Identities = 59/259 (22%), Positives = 94/259 (36%), Gaps = 32/259 (12%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNL-HGTVQLDKILNLGNLAKLDL 209
            S+   L+L  N+L+ S+P  VF+ L +LT L LSSN L              +L  LDL
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 210 SYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN---LKNQSQLQYLYLSENQISREIP 266
           S+N +     S N+     LE L+     L+++       +   L YL +S         
Sbjct: 86  SFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAF 142

Query: 267 NWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFS 326
           N I+   +  L  L ++ N         +     F +L              NL ++D S
Sbjct: 143 NGIFN-GLSSLEVLKMAGNSFQE-----NFLPDIFTELR-------------NLTFLDLS 183

Query: 327 NNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDA 385
                  +     N +  L+    ++N    +         +L +LD S N  M  K   
Sbjct: 184 QCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 386 FLNCL--LQTLDLNGNRLQ 402
             +    L  L+L  N   
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.5 bits (220), Expect = 7e-20
 Identities = 60/272 (22%), Positives = 111/272 (40%), Gaps = 33/272 (12%)

Query: 73  SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNS 132
           S T +  +  G    +P  I S      L+   N+   S+    ++ L  L    LS N 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG 63

Query: 133 LNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGT 192
           L      S       S+  +++L  LDLS N +  ++  +   L++L  L    +NL   
Sbjct: 64  L------SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 116

Query: 193 VQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCK-LREIPN--LKN 247
            +    L+L NL  LD+S+        + N  F+    LE+L +A               
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 248 QSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG-----FQGPYSIPALRFI 302
              L +L LS+ Q+  ++    +  S+  L  LN+SHN         ++    + +L+ +
Sbjct: 174 LRNLTFLDLSQCQL-EQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKC---LNSLQVL 228

Query: 303 DLSSHQLR----GNIHQLPNNLIYIDFSNNNF 330
           D S + +       +   P++L +++ + N+F
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 6e-19
 Identities = 60/245 (24%), Positives = 87/245 (35%), Gaps = 24/245 (9%)

Query: 49  LRSLNLARTSFNGTQIPSK-LANISSLTYLNLSD--AGFAGHIPLQISSMARLVALDFSF 105
              L L         +P      ++ LT L+LS     F G           L  LD SF
Sbjct: 30  ATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 106 NQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL 165
           N    ++SS  +  L  L +     ++L      S+F        S   L  LD+S    
Sbjct: 88  NGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVF-------LSLRNLIYLDISHTHT 138

Query: 166 RGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYS 224
           R      +F  L  L  L ++ N+       D    L NL  LDLS   L   E     +
Sbjct: 139 R-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTA 194

Query: 225 FSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCL 280
           F+ +  L++LN++      +     K  + LQ L  S N I         +     L  L
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFL 253

Query: 281 NLSHN 285
           NL+ N
Sbjct: 254 NLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 51/242 (21%), Positives = 86/242 (35%), Gaps = 22/242 (9%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNG-TQIPSKLANISSLTYLNLSDAGF 84
           L LS+  +S     + S F    L+ L+L   SFNG   + S    +  L +L+   +  
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDL---SFNGVITMSSNFLGLEQLEHLDFQHSNL 113

Query: 85  AGHIPLQI-SSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFE 143
                  +  S+  L+ LD S         +  +  L +L    ++ NS   +    +F 
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF- 171

Query: 144 FPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLG 202
                      L  LDLS  +L   +  + F  L  L  L +S NN   ++       L 
Sbjct: 172 ------TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLN 223

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA------SCKLREIPNLKNQSQLQYLYL 256
           +L  LD S N +   +      F   L  LNL       +C+ +         +   + +
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 283

Query: 257 SE 258
             
Sbjct: 284 ER 285

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 5/144 (3%)

Query: 300 RFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT--G 357
             I  +S  L      +P++   ++  +N   S +P    + + +L     ++NGL+  G
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 358 IIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL-LQTLDLNGNRLQGTVPKSI-ANCKML 415
               S    T+L  LDLS N  +  S  FL    L+ LD   + L+     S+  + + L
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 416 EVLNLGNNQFSDKFPCWLYDAPSL 439
             L++ +      F        SL
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSL 152

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 11/147 (7%)

Query: 293 PYSIPA-LRFIDLSSHQLR----GNIHQLPNNLIYIDFSNNNFTS-SIPADTGNFMPRLR 346
           P  IP+    ++L S++L+    G   +L   L  +  S+N  +     + +      L+
Sbjct: 23  PTGIPSSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFGTTSLK 81

Query: 347 YFCAANNGLTGIIPASLCNATTLSLLDLSNN--SFMKKSDAFLNC-LLQTLDLNGNRLQG 403
           Y   + NG+   + ++      L  LD  ++    M +   FL+   L  LD++    + 
Sbjct: 82  YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 404 TVPKSIANCKMLEVLNLGNNQFSDKFP 430
                      LEVL +  N F + F 
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFL 167

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 48/296 (16%), Positives = 96/296 (32%), Gaps = 61/296 (20%)

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNL 204
           I  N +        ++ + L+     S+ +    +  L LS N L   +    +     L
Sbjct: 5   IKQNGNR--YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISRE 264
             L+LS N L     + +      L  L+L +  ++E+    +   ++ L+ + N IS  
Sbjct: 61  ELLNLSSNVL---YETLDLESLSTLRTLDLNNNYVQELLVGPS---IETLHAANNNIS-R 113

Query: 265 IPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYID 324
           +     +    G   + L++N +        +  L     S              + Y+D
Sbjct: 114 VSCSRGQ----GKKNIYLANNKIT------MLRDLDEGCRS-------------RVQYLD 150

Query: 325 FSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD 384
              N   +   A+       L +     N +                 D+       K  
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY----------------DVKGQVVFAK-- 192

Query: 385 AFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
                 L+TLDL+ N+L   +     +   +  ++L NN+        L  + +L 
Sbjct: 193 ------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 48/338 (14%), Positives = 112/338 (33%), Gaps = 33/338 (9%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103
           + +  +   +  +S    Q  +    +  ++  L+LS    +      ++   +L  L+ 
Sbjct: 8   NGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN 163
           S N        +  E L  L    L++N +   +                +++TL  + N
Sbjct: 66  SSNVLY-ETLDL--ESLSTLRTLDLNNNYVQ-ELL------------VGPSIETLHAANN 109

Query: 164 RLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNY 223
            +   +  S    +   ++ L++N +   ++         +  LDL  N +     +   
Sbjct: 110 NIS-RVSCSRG--QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 224 SFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 283
           + S  LE LNL    + ++      ++L+ L LS N+++  +       +  G+  ++L 
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAA--GVTWISLR 222

Query: 284 HNLLVGFQGP-YSIPALRFIDLSSHQLR-GNIHQLPNNLIYIDFSNNNFTSSIPADTGNF 341
           +N LV  +        L   DL  +    G +    +    +          +       
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 342 MPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF 379
              +             +PA         L+ L ++  
Sbjct: 283 CT-VPTLGHYGAYCCEDLPAPFA----DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.3 bits (235), Expect = 1e-21
 Identities = 61/367 (16%), Positives = 121/367 (32%), Gaps = 73/367 (19%)

Query: 64  IPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL 123
           I     N +      ++D+     +     S   +  LD S N     +S I    L   
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP----LSQISAADLAPF 57

Query: 124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLL 183
                                        + L+ L+LS N L  ++ +    L  L +L 
Sbjct: 58  -----------------------------TKLELLNLSSNVLYETLDLE--SLSTLRTLD 86

Query: 184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP 243
           L++N       + ++L   ++  L  + N+++    SR        + + LA+ K+  + 
Sbjct: 87  LNNN------YVQELLVGPSIETLHAANNNISRVSCSRGQG----KKNIYLANNKITMLR 136

Query: 244 N--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRF 301
           +     +S++QYL L  N+I   +       S   L  LNL +N +        +     
Sbjct: 137 DLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIY------DVKGQVV 189

Query: 302 IDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPA 361
                             L  +D S+N     +  +  +    + +    NN L  +I  
Sbjct: 190 F---------------AKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEK 231

Query: 362 SLCNATTLSLLDLSNNSFMKKS-DAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNL 420
           +L  +  L   DL  N F   +   F +   +   +    ++    ++   C +  + + 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 421 GNNQFSD 427
           G     D
Sbjct: 292 GAYCCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 27/223 (12%), Positives = 57/223 (25%), Gaps = 43/223 (19%)

Query: 40  AASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV 99
                    ++ L+L     +        A+  +L +LNL        +  Q+   A+L 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLK 194

Query: 100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLD 159
            LD S N+ +                           +                 +  + 
Sbjct: 195 TLDLSSNKLA--------------------------FMGPEFQSAA--------GVTWIS 220

Query: 160 LSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDES 219
           L  N+L   I  ++   + L    L  N  H     D       +  +           +
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLT 276

Query: 220 SRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 262
            +N     +  L +  +    ++P       +    L  +   
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA---LGHHHHH 316

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (253), Expect = 3e-23
 Identities = 53/280 (18%), Positives = 97/280 (34%), Gaps = 42/280 (15%)

Query: 157 TLDLSGNRLRGSIPVSVF-ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLA 215
           + +   N +        F    K     L   N +  V L K   +   ++L L+  +L 
Sbjct: 14  SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL- 71

Query: 216 VDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVV 275
              SS   +  P + +L +    L  +P L   + L+YL   +N++S  +P         
Sbjct: 72  ---SSLPDNLPPQITVLEITQNALISLPEL--PASLEYLDACDNRLS-TLPELP-----A 120

Query: 276 GLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIP 335
            L  L++ +N L     P     L +I+  ++QL   + +LP +L  +   NN  T  +P
Sbjct: 121 SLKHLDVDNNQLTML--PELPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLT-FLP 176

Query: 336 ADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLD 395
                    L     + N L   +PA           ++                     
Sbjct: 177 E----LPESLEALDVSTNLLES-LPAVPVRNHHSEETEIF------------------FR 213

Query: 396 LNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYD 435
              NR+   +P++I +      + L +N  S +    L  
Sbjct: 214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.3 bits (229), Expect = 2e-20
 Identities = 58/349 (16%), Positives = 117/349 (33%), Gaps = 70/349 (20%)

Query: 88  IPLQISSMARLVALDFSFNQFSGSISSI--RWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
           I L I++   L + +  +N  SG+ +     W+          + N     +   +    
Sbjct: 3   IMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI--- 58

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
                  +    L L+   L  S+P ++    ++T L ++ N L     L +     +L 
Sbjct: 59  -------NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI---SLPE--LPASLE 103

Query: 206 KLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISRE 264
            LD   N L  + E   +      L+ L++ + +L  +P L   + L+Y+    NQ++  
Sbjct: 104 YLDACDNRLSTLPELPAS------LKHLDVDNNQLTMLPEL--PALLEYINADNNQLT-M 154

Query: 265 IPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR------GNIHQLPN 318
           +P          L  L++ +N L     P    +L  +D+S++ L          H    
Sbjct: 155 LPELPTS-----LEVLSVRNNQLTFL--PELPESLEALDVSTNLLESLPAVPVRNHHSEE 207

Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
             I+     N  T                           IP ++ +      + L +N 
Sbjct: 208 TEIFFRCRENRITH--------------------------IPENILSLDPTCTIILEDNP 241

Query: 379 FMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
              +    L+      D +G R+  ++     N     + +     F +
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 64/409 (15%), Positives = 104/409 (25%), Gaps = 104/409 (25%)

Query: 22  HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD 81
             +  +    +ISG   +  S +         L   + N      K   I+  + L L+ 
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDK--WEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 82  AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSM 141
                                      S                          S+P ++
Sbjct: 69  ------------------------LNLS--------------------------SLPDNL 78

Query: 142 FEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201
                        +  L+++ N L  S+P        L  L    N L     L +    
Sbjct: 79  P----------PQITVLEITQNALI-SLPE---LPASLEYLDACDNRLS---TLPE--LP 119

Query: 202 GNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ 260
            +L  LD+  N L  + E          LE +N  + +L  +P L   + L+ L +  NQ
Sbjct: 120 ASLKHLDVDNNQLTMLPELPAL------LEYINADNNQLTMLPEL--PTSLEVLSVRNNQ 171

Query: 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNL 320
           +   +P          L  L++S NLL     P                    H      
Sbjct: 172 L-TFLPELP-----ESLEALDVSTNLLESL--PAVP--------------VRNHHSEETE 209

Query: 321 IYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFM 380
           I+     N  T  IP +  + +         +N L+  I  SL   T           F 
Sbjct: 210 IFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

Query: 381 KKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKF 429
                         D             ++            N FS   
Sbjct: 268 MSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 8e-23
 Identities = 69/363 (19%), Positives = 112/363 (30%), Gaps = 76/363 (20%)

Query: 73  SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNS 132
            L  +  SD G    +P +IS       LD   N  S  +    ++ L +L   VL +N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 133 LNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGT 192
           ++  I    F       +    L  L +S N L   IP ++     L  L +  N +   
Sbjct: 90  IS-KIHEKAF-------SPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-K 137

Query: 193 VQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM-LELLNLASCKLREIPNLKNQSQL 251
           V       L N+  +++  N L         +F  + L  L ++  KL  IP       L
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGLKLNYLRISEAKLTGIPK-DLPETL 195

Query: 252 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG 311
             L+L  N+I                                 +I     +  S      
Sbjct: 196 NELHLDHNKIQ--------------------------------AIELEDLLRYS------ 217

Query: 312 NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSL 371
                   L  +   +N     I   + +F+P LR     NN L+  +PA L +   L +
Sbjct: 218 -------KLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268

Query: 372 LDLSNN--------SFMKKSDAFLNCLLQTLDLNGNRLQGTV--PKSIANCKMLEVLNLG 421
           + L  N         F              + L  N +      P +         +  G
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 422 NNQ 424
           N +
Sbjct: 329 NYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 61/276 (22%), Positives = 107/276 (38%), Gaps = 37/276 (13%)

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           L  +  S   L+ ++P  +      T L L +N++   ++ D    L +L  L L  N +
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 215 AVDESSRNYSFSPM--LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRV 272
                    +FSP+  L+ L ++   L EIP     S L  L + +N+I + +P  ++  
Sbjct: 91  ---SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS-LVELRIHDNRIRK-VPKGVFS- 144

Query: 273 SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTS 332
            +  ++C+ +  N L             F  L               L Y+  S    T 
Sbjct: 145 GLRNMNCIEMGGNPLENS----GFEPGAFDGL--------------KLNYLRISEAKLTG 186

Query: 333 SIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFLNCL- 390
            IP D       L      +N +  I    L   + L  L L +N     ++ +      
Sbjct: 187 -IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 391 LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
           L+ L L+ N+L   VP  + + K+L+V+ L  N  +
Sbjct: 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 68/340 (20%), Positives = 114/340 (33%), Gaps = 63/340 (18%)

Query: 10  CDWSGVDCDEAG----------HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSF 59
           C    V C + G              LDL    IS           L +L +L L     
Sbjct: 33  CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNKI 90

Query: 60  NGTQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSM-----ARLVALDFSFNQFSGSIS 113
             ++I  K  + +  L  L +S           +  +     + LV L    N+    + 
Sbjct: 91  --SKIHEKAFSPLRKLQKLYISKN--------HLVEIPPNLPSSLVELRIHDNRIR-KVP 139

Query: 114 SIRWEHLLNLVYAVLSDNSL-NGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVS 172
              +  L N+    +  N L N       F            L+ L +S  +L   IP  
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAF--------DGLKLNYLRISEAKLT-GIPKD 190

Query: 173 VFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM--LE 230
           +   + L  L L  N +   ++L+ +L    L +L L +N +       N S S +  L 
Sbjct: 191 LP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR---MIENGSLSFLPTLR 244

Query: 231 LLNLASCKLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG 289
            L+L + KL  +P  L +   LQ +YL  N I+ ++    +     G+     +   L  
Sbjct: 245 ELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 290 FQGPY-SIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNN 328
              PY  +    F  ++             + + I F N 
Sbjct: 304 NPVPYWEVQPATFRCVT-------------DRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 299 LRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358
           LR +  S   L+    ++  +   +D  NN+ +  +  D    +  L      NN ++ I
Sbjct: 35  LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKI 93

Query: 359 IPASLCNATTLSLLDLSNNSFMK-KSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEV 417
              +      L  L +S N  ++   +   +  L  L ++ NR++       +  + +  
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNC 151

Query: 418 LNLGNNQFSD 427
           + +G N   +
Sbjct: 152 IEMGGNPLEN 161

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.5 bits (243), Expect = 4e-22
 Identities = 64/286 (22%), Positives = 112/286 (39%), Gaps = 43/286 (15%)

Query: 72  SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN 131
           +  + +  +  G +  +P  I   +    L+   N     I +  + HL +L    L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN 109

Query: 132 SLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLH 190
           S+   I    F          ++L+TL+L  N L   IP   FE L KL  L L +N + 
Sbjct: 110 SIR-QIEVGAF-------NGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE 160

Query: 191 GTVQLDKILNLGNLAKLDLS-YNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLKN 247
            ++       + +L +LDL     L   E     +F  +  L+ LNL  C ++++PNL  
Sbjct: 161 -SIPSYAFNRVPSLMRLDLGELKKL---EYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP 216

Query: 248 QSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSH 307
              L+ L +S N      P     +S   L  L + ++ +        I    F  L+  
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLS--SLKKLWVMNSQVS------LIERNAFDGLA-- 266

Query: 308 QLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANN 353
                      +L+ ++ ++NN + S+P D    +  L      +N
Sbjct: 267 -----------SLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 1e-21
 Identities = 64/281 (22%), Positives = 102/281 (36%), Gaps = 38/281 (13%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
           S+    +  +   L   +P  +        L L  NN+   +Q D   +L +L  L L  
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108

Query: 212 NSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPN 267
           NS+   E     +F+ +  L  L L    L  IP+   +  S+L+ L+L  N I   IP+
Sbjct: 109 NSIRQIEVG---AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPS 164

Query: 268 WIWRVSVVGLHCLNLSH-NLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFS 326
           + +   V  L  L+L     L        I    F  L              NL Y++  
Sbjct: 165 YAFN-RVPSLMRLDLGELKKLE------YISEGAFEGLF-------------NLKYLNLG 204

Query: 327 NNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDA 385
             N    +P  T   +  L     + N    I P S    ++L  L + N+     + +A
Sbjct: 205 MCNIKD-MPNLTP--LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 386 FLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425
           F     L  L+L  N L           + L  L+L +N +
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.6 bits (186), Expect = 5e-15
 Identities = 66/299 (22%), Positives = 101/299 (33%), Gaps = 73/299 (24%)

Query: 10  CDWSG--VDCDEAG----------HVIGLDLSTESISGGIENAASLFSLHYLRSLNLART 57
           C      V C   G          +   L+L   +I   I+       LH+L  L L R 
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-IQADT-FRHLHHLEVLQLGR- 108

Query: 58  SFNG-TQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSI 115
             N   QI       ++SL  L L D                        N     ++ I
Sbjct: 109 --NSIRQIEVGAFNGLASLNTLELFD------------------------NW----LTVI 138

Query: 116 RWE---HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSG-NRLRGSIPV 171
                 +L  L    L +N +  SIP   F           +L  LDL    +L   I  
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIE-SIPSYAFNR-------VPSLMRLDLGELKKLE-YISE 189

Query: 172 SVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM-- 228
             FE L  L  L L   N+     +  +  L  L +L++S N           SF  +  
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEIRPG---SFHGLSS 243

Query: 229 LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 285
           L+ L + + ++  I        + L  L L+ N +S  +P+ ++   +  L  L+L HN
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFT-PLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 27/181 (14%)

Query: 249 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ 308
           S  +YL L EN I + I    +R  +  L  L L  N +        I    F  L+   
Sbjct: 75  SNTRYLNLMENNI-QMIQADTFR-HLHHLEVLQLGRNSIR------QIEVGAFNGLA--- 123

Query: 309 LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATT 368
                     +L  ++  +N  T  IP+    ++ +LR     NN +  I   +     +
Sbjct: 124 ----------SLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 369 LSLLDLSNNSFMKK--SDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425
           L  LDL     ++     AF     L+ L+L    ++  +P ++     LE L +  N F
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230

Query: 426 S 426
            
Sbjct: 231 P 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 23/152 (15%)

Query: 45  SLHYLRSLNLARTSFNG-TQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSMARLVALD 102
            +  L  L+L          I       + +L YLNL        +P  ++ +  L  L+
Sbjct: 169 RVPSLMRLDLGE--LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224

Query: 103 FSFNQFSGSISSIRWE---HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLD 159
            S N        IR      L +L    + ++ ++  I R+ F          ++L  L+
Sbjct: 225 MSGNH----FPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAF-------DGLASLVELN 272

Query: 160 LSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLH 190
           L+ N L  S+P  +F  L+ L  L L  N  +
Sbjct: 273 LAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 40/183 (21%), Positives = 57/183 (31%), Gaps = 28/183 (15%)

Query: 248 QSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSH 307
            +Q   +  +   +S  +P  I          LNL  N +        I A  F  L   
Sbjct: 53  SNQFSKVVCTRRGLSE-VPQGI----PSNTRYLNLMENNIQ------MIQADTFRHLH-- 99

Query: 308 QLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNAT 367
                      +L  +    N+    I     N +  L      +N LT I   +    +
Sbjct: 100 -----------HLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147

Query: 368 TLSLLDLSNNSFMK-KSDAFLNCL-LQTLDL-NGNRLQGTVPKSIANCKMLEVLNLGNNQ 424
            L  L L NN      S AF     L  LDL    +L+     +      L+ LNLG   
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 425 FSD 427
             D
Sbjct: 208 IKD 210

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.8 bits (236), Expect = 3e-21
 Identities = 71/286 (24%), Positives = 110/286 (38%), Gaps = 43/286 (15%)

Query: 72  SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN 131
           +  + +          +P  IS       L+   NQ    I    ++HL +L    LS N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN 98

Query: 132 SLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLH 190
            +  +I    F          + L+TL+L  NRL  +IP   F  L KL  L L +N + 
Sbjct: 99  HIR-TIEIGAF-------NGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE 149

Query: 191 GTVQLDKILNLGNLAKLDLS-YNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLKN 247
            ++       + +L +LDL     L         +F  +  L  LNLA C LREIPNL  
Sbjct: 150 -SIPSYAFNRIPSLRRLDLGELKRL---SYISEGAFEGLSNLRYLNLAMCNLREIPNLTP 205

Query: 248 QSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSH 307
             +L  L LS N +S   P       ++ L  L +  + +        I    F +L   
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQ------VIERNAFDNLQ-- 255

Query: 308 QLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANN 353
                      +L+ I+ ++NN T  +P D    +  L      +N
Sbjct: 256 -----------SLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 4e-21
 Identities = 61/279 (21%), Positives = 101/279 (36%), Gaps = 38/279 (13%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
           S+    +      LR  +P  +        L L  N +   ++++   +L +L  L LS 
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSR 97

Query: 212 NSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPN 267
           N +    +    +F+ +  L  L L   +L  IPN      S+L+ L+L  N I   IP+
Sbjct: 98  NHIR---TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPS 153

Query: 268 WIWRVSVVGLHCLNLSH-NLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFS 326
           + +   +  L  L+L     L        I    F  LS             NL Y++ +
Sbjct: 154 YAFN-RIPSLRRLDLGELKRLS------YISEGAFEGLS-------------NLRYLNLA 193

Query: 327 NNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAF 386
             N    IP  T   + +L     + N L+ I P S      L  L +  +         
Sbjct: 194 MCNLRE-IPNLTP--LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 387 LNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNN 423
            + L  L  ++L  N L             LE ++L +N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 59/241 (24%), Positives = 92/241 (38%), Gaps = 27/241 (11%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNG-TQIPSK-LANISSLTYLNLSDAG 83
           L+L    I     N+     L +L  L L+R   N    I       +++L  L L D  
Sbjct: 69  LNLHENQIQIIKVNS--FKHLRHLEILQLSR---NHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 84  FAGHIPLQI-SSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMF 142
               IP      +++L  L    N    SI S  +  + +L    L +      I    F
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 143 EFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLG 202
                     S L  L+L+   LR  IP ++  L KL  L LS N+L   ++      L 
Sbjct: 182 -------EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLM 231

Query: 203 NLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSE 258
           +L KL +  + + V E +   +F     L  +NLA   L  +P+        L+ ++L  
Sbjct: 232 HLQKLWMIQSQIQVIERN---AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 259 N 259
           N
Sbjct: 289 N 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 27/181 (14%)

Query: 249 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ 308
           +  + L L ENQI   I    ++  +  L  L LS N +       +I    F  L+   
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFK-HLRHLEILQLSRNHIR------TIEIGAFNGLA--- 112

Query: 309 LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATT 368
                     NL  ++  +N  T+ IP     ++ +L+     NN +  I   +     +
Sbjct: 113 ----------NLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 369 LSLLDLSNNSFMKK--SDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425
           L  LDL     +      AF     L+ L+L    L+  +P ++     L+ L+L  N  
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219

Query: 426 S 426
           S
Sbjct: 220 S 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 23/152 (15%)

Query: 45  SLHYLRSLNLARTSFNG-TQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSMARLVALD 102
            +  LR L+L        + I       +S+L YLNL+       IP  ++ + +L  LD
Sbjct: 158 RIPSLRRLDLGE--LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213

Query: 103 FSFNQFSGSISSIRWE---HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLD 159
            S N     +S+IR      L++L    +  + +   I R+ F        +  +L  ++
Sbjct: 214 LSGNH----LSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAF-------DNLQSLVEIN 261

Query: 160 LSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLH 190
           L+ N L   +P  +F  L  L  + L  N  +
Sbjct: 262 LAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 34/143 (23%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 293 PYSIPA-LRFIDLSSHQLR----GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRY 347
           P  I    R ++L  +Q++     +   L + L  +  S N+   +I     N +  L  
Sbjct: 59  PDGISTNTRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHI-RTIEIGAFNGLANLNT 116

Query: 348 FCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFLNCL-LQTLDL-NGNRLQGT 404
               +N LT I   +    + L  L L NN      S AF     L+ LDL    RL   
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 405 VPKSIANCKMLEVLNLGNNQFSD 427
              +      L  LNL      +
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLRE 199

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 91.7 bits (228), Expect = 7e-21
 Identities = 46/281 (16%), Positives = 104/281 (37%), Gaps = 20/281 (7%)

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
           IF + + +    +    + +  ++  +  +L  +T+L      +     ++ +  L NL 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLI 66

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREI 265
            L+L  N +              +  L L+   L+ +  +     ++ L L+  QI+   
Sbjct: 67  GLELKDNQI---TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT--- 120

Query: 266 PNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPNNLIYI 323
            +      +  L  L L  N +        +  L+++ + + Q+     +  L   L  +
Sbjct: 121 -DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK-LTTL 178

Query: 324 DFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKS 383
              +N  +   P  +   +P L      NN ++ + P  L N + L ++ L+N +   + 
Sbjct: 179 KADDNKISDISPLAS---LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233

Query: 384 DAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQ 424
             + N L+    + G       P +I++       NL  N 
Sbjct: 234 VFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 9e-18
 Identities = 44/230 (19%), Positives = 91/230 (39%), Gaps = 17/230 (7%)

Query: 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 259
            L N  K+    +++    +  +      +  L+     +  I  ++  + L  L L +N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADL---DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 260 QISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN- 318
           QI+ ++       ++  +  L LS N L        + +++ +DL+S Q+  ++  L   
Sbjct: 74  QIT-DLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT-DVTPLAGL 128

Query: 319 -NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN 377
            NL  +    N  T+  P      +  L+Y    N  ++ + P  L N + L+ L   +N
Sbjct: 129 SNLQVLYLDLNQITNISPLAG---LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183

Query: 378 SFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
                S       L  + L  N++  +    +AN   L ++ L N   ++
Sbjct: 184 KISDISPLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 52/308 (16%), Positives = 104/308 (33%), Gaps = 40/308 (12%)

Query: 37  IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMA 96
           I       +L     +       +        A++  +T L+    G    I   +  + 
Sbjct: 9   INVIFPDPALANAIKIAA---GKSNVTDTVTQADLDGITTLSAFGTGVT-TIE-GVQYLN 63

Query: 97  RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALD 156
            L+ L+   NQ +  ++ +  ++L  +    LS N L            + + A   ++ 
Sbjct: 64  NLIGLELKDNQIT-DLAPL--KNLTKITELELSGNPLKN----------VSAIAGLQSIK 110

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
           TLDL+  ++    P++   L  L  L L  N +     +  +  L NL  L +    +  
Sbjct: 111 TLDLTSTQITDVTPLA--GLSNLQVLYLDLNQI---TNISPLAGLTNLQYLSIGNAQV-- 163

Query: 217 DESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVG 276
                  +    L  L     K+ +I  L +   L  ++L  NQIS   P      +   
Sbjct: 164 -SDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPL----ANTSN 218

Query: 277 LHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYI----DFSNNNFTS 332
           L  + L++  +       + P     +L    +       P     I     +++ N T 
Sbjct: 219 LFIVTLTNQTIT------NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272

Query: 333 SIPADTGN 340
           ++ +   N
Sbjct: 273 NLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 51/289 (17%), Positives = 98/289 (33%), Gaps = 31/289 (10%)

Query: 92  ISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS 151
             ++A  + +    +  +    +     L  +         +                 +
Sbjct: 15  DPALANAIKIAAGKSNVT-DTVTQ--ADLDGITTLSAFGTGVT--------TIEGVQYLN 63

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
           +  L  L+L  N++    P+    L K+T L LS N L     +  I  L ++  LDL+ 
Sbjct: 64  N--LIGLELKDNQITDLAPLK--NLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTS 116

Query: 212 NSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWR 271
             +              L++L L   ++  I  L   + LQYL +   Q+S   P     
Sbjct: 117 TQITDVTPLAGL---SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL---- 169

Query: 272 VSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNN 329
            ++  L  L    N +       S+P L  + L ++Q+     +     NL  +  +N  
Sbjct: 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTS-NLFIVTLTNQT 228

Query: 330 FTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
            T+       N +               I PA++ +  T +  +L+ N 
Sbjct: 229 ITNQPVFYNNNLVVPNVV---KGPSGAPIAPATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 31/194 (15%), Positives = 70/194 (36%), Gaps = 14/194 (7%)

Query: 236 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS 295
              +  I      +    +   ++ ++  +     +  + G+  L+     +   +G   
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIEGVQY 61

Query: 296 IPALRFIDLSSHQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANN 353
           +  L  ++L  +Q+     +  L   +  ++ S N   + + A  G  +  ++     + 
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTK-ITELELSGNPLKN-VSAIAG--LQSIKTLDLTST 117

Query: 354 GLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCK 413
            +T + P  L   + L +L L  N     S       LQ L +   ++    P  +AN  
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLS 173

Query: 414 MLEVLNLGNNQFSD 427
            L  L   +N+ SD
Sbjct: 174 KLTTLKADDNKISD 187

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 22/190 (11%)

Query: 37  IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMA 96
           I +   L  L  L+ L L     N     S LA +++L YL++ +A  +   PL  ++++
Sbjct: 119 ITDVTPLAGLSNLQVLYL---DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL--ANLS 173

Query: 97  RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALD 156
           +L  L    N+ S  IS +    L NL+   L +N ++           +   A++S L 
Sbjct: 174 KLTTLKADDNKIS-DISPL--ASLPNLIEVHLKNNQISD----------VSPLANTSNLF 220

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
            + L+   +       VF    L    +        +    I + G  A  +L++N L  
Sbjct: 221 IVTLTNQTITN---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN-LTS 276

Query: 217 DESSRNYSFS 226
             ++ +Y+F+
Sbjct: 277 FINNVSYTFN 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.6 bits (220), Expect = 4e-19
 Identities = 72/341 (21%), Positives = 122/341 (35%), Gaps = 45/341 (13%)

Query: 89  PLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS 148
            +    +A L +LD   +  +  ++ I  E L  L   + + N++            +  
Sbjct: 35  TISEEQLATLTSLDCHNSSIT-DMTGI--EKLTGLTKLICTSNNIT--------TLDLSQ 83

Query: 149 NASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLD 208
           N   + L  L    N+L  ++ V+   L KLT L   +N L        +     L  L+
Sbjct: 84  N---TNLTYLACDSNKLT-NLDVT--PLTKLTYLNCDTNKLTK----LDVSQNPLLTYLN 133

Query: 209 LSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR-EIPN 267
            + N+L   + S N      L  L+    K     ++  Q+QL  L  S N+I+  ++  
Sbjct: 134 CARNTLTEIDVSHN----TQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQ 189

Query: 268 WIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG-NIHQLPNNLIYIDFS 326
                    L+ LN   N +           L F+D SS++L   ++  L   L Y D S
Sbjct: 190 NKL------LNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEIDVTPLTQ-LTYFDCS 241

Query: 327 NNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAF 386
            N  T  +   T   + +L         L  I    L + T L          +K+ D  
Sbjct: 242 VNPLTE-LDVST---LSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 387 LNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
            N  L  LD     +       ++    L  L L N + ++
Sbjct: 295 HNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE 332

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 75/393 (19%), Positives = 130/393 (33%), Gaps = 45/393 (11%)

Query: 35  GGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISS 94
           G  ++    F      S   A      T   S    +++LT L+  ++     +   I  
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSIT-DMT-GIEK 62

Query: 95  MARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSA 154
           +  L  L  + N     I+++      NL Y     N L            +      + 
Sbjct: 63  LTGLTKLICTSNN----ITTLDLSQNTNLTYLACDSNKLT--------NLDVTPL---TK 107

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           L  L+   N+L   + VS  +   LT L  + N L    ++D + +   L +LD   N  
Sbjct: 108 LTYLNCDTNKLT-KLDVS--QNPLLTYLNCARNTL---TEID-VSHNTQLTELDCHLNKK 160

Query: 215 AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSV 274
               +  + +    L  L+ +  K+ E+  +     L  L    N I+ ++         
Sbjct: 161 ---ITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNIT-KLDLN----QN 211

Query: 275 VGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSI 334
           + L  L+ S N L        +  L + D S + L        + L  +     +    I
Sbjct: 212 IQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE-I 269

Query: 335 PADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTL 394
                    +L YF     G   I    + + T L LLD        + D   N  L  L
Sbjct: 270 DL---THNTQLIYF--QAEGCRKIKELDVTHNTQLYLLDCQAAGI-TELDLSQNPKLVYL 323

Query: 395 DLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
            LN   L   +   +++   L+ L+  N    D
Sbjct: 324 YLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD 353

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 66/398 (16%), Positives = 123/398 (30%), Gaps = 46/398 (11%)

Query: 42  SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101
            L     L  L         T +   +  ++ LTYLN           L +S    L  L
Sbjct: 80  DLSQNTNLTYLACDSNKL--TNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYL 132

Query: 102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLS 161
           + + N     ++ I   H   L       N     +               + L TLD S
Sbjct: 133 NCARNT----LTEIDVSHNTQLTELDCHLNKKITKLD----------VTPQTQLTTLDCS 178

Query: 162 GNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSR 221
            N++   + VS  + K L  L   +NN+    +LD +     L  LD S N L    +  
Sbjct: 179 FNKIT-ELDVS--QNKLLNRLNCDTNNIT---KLD-LNQNIQLTFLDCSSNKL----TEI 227

Query: 222 NYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 281
           + +    L   + +   L E+  +   S+L  L+  +  +  EI           L    
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLL-EIDLT----HNTQLIYFQ 281

Query: 282 LSHNLLVGFQGPYSIPALRFIDLSSHQLRG-NIHQLPNNLIYIDFSNNNFTSSIPADTGN 340
                 +          L  +D  +  +   ++ Q P  L+Y+  +N   T  +     +
Sbjct: 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK-LVYLYLNNTELTE-LDV---S 336

Query: 341 FMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNR 400
              +L+     N  +     +S+     L+    +    +      L     T+ ++ + 
Sbjct: 337 HNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394

Query: 401 LQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPS 438
           L               V +   N  + +       A +
Sbjct: 395 LDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 49/304 (16%), Positives = 97/304 (31%), Gaps = 37/304 (12%)

Query: 43  LFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALD 102
           +     L +L+ +      T++   ++    L  LN           L ++   +L  LD
Sbjct: 166 VTPQTQLTTLDCSFNKI--TELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLD 218

Query: 103 FSFNQFSGSISSIRWEHLLNLVYAVLSDN---SLNGSIPRSMFEFPIFSN-------ASS 152
            S N+    ++ I    L  L Y   S N    L+ S    +                 +
Sbjct: 219 CSSNK----LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274

Query: 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN 212
           + L      G R    + V+     +L  L   +  +    +LD +     L  L L+  
Sbjct: 275 TQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQAAGIT---ELD-LSQNPKLVYLYLNNT 328

Query: 213 SLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRV 272
            L    +  + S +  L+ L+  +  +++  ++     L   + +E Q        +   
Sbjct: 329 EL----TELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNN 384

Query: 273 SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLP--NNLIYIDFSNNNF 330
           S+     + +S +LL  F  P +I                   L   N  +   F++ N 
Sbjct: 385 SLT----IAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENG 440

Query: 331 TSSI 334
               
Sbjct: 441 AIVG 444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.1 bits (215), Expect = 1e-18
 Identities = 54/317 (17%), Positives = 108/317 (34%), Gaps = 25/317 (7%)

Query: 92  ISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS 151
             + A  +  +      +    +     L ++   + +++ +     +S+       N  
Sbjct: 17  DDAFAETIKDNLKKKSVT-DAVTQ--NELNSIDQIIANNSDI-----KSVQGIQYLPN-- 66

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
              +  L L+GN+L    P++   LK L  L L  N +     L  + +L  L  L L +
Sbjct: 67  ---VTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEH 118

Query: 212 NSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWR 271
           N +            P LE L L + K+ +I  L   ++L  L L +NQIS +I      
Sbjct: 119 NGI---SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPLAGL 174

Query: 272 VSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFT 331
                L  L LS N +   +    +  L  ++L S +         +NL+  +   N   
Sbjct: 175 TK---LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 332 SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLL 391
           S +  +  +            +        S      +++         + +        
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

Query: 392 QTLDLNGNRLQGTVPKS 408
            + D++G  ++  V   
Sbjct: 292 VSYDVDGTVIKTKVEAG 308

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.1 bits (215), Expect = 2e-18
 Identities = 48/295 (16%), Positives = 109/295 (36%), Gaps = 38/295 (12%)

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
           IF + + +     +L    +  ++  +  EL  +  ++ +++++     +  I  L N+ 
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK---SVQGIQYLPNVT 68

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREI 265
           KL L+ N L      +  +    L  L L   K++++ +LK+  +L+ L L  N IS +I
Sbjct: 69  KLFLNGNKL---TDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS-DI 124

Query: 266 PNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDF 325
                 V +  L  L L +N +               D++       + +L   L  +  
Sbjct: 125 NGL---VHLPQLESLYLGNNKIT--------------DIT------VLSRLTK-LDTLSL 160

Query: 326 SNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDA 385
            +N  +  +P      + +L+    + N ++ +    L     L +L+L +   + K   
Sbjct: 161 EDNQISDIVPLAG---LTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPIN 215

Query: 386 FLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
             + L+    +         P+ I++    E  N+  +               + 
Sbjct: 216 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 5e-15
 Identities = 38/203 (18%), Positives = 76/203 (37%), Gaps = 18/203 (8%)

Query: 229 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLV 288
           +      S  +++I      ++     L +  ++  +        +  +  +  +++ + 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIK 56

Query: 289 GFQGPYSIPALRFIDLSSHQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLR 346
             QG   +P +  + L+ ++L     +  L  NL ++    N             + +L+
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLK-NLGWLFLDENKIKDLSSLKD---LKKLK 112

Query: 347 YFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGT 404
                +NG++ I    L +   L  L L NN         L+ L  L TL L  N++   
Sbjct: 113 SLSLEHNGISDING--LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI 168

Query: 405 VPKSIANCKMLEVLNLGNNQFSD 427
           VP  +A    L+ L L  N  SD
Sbjct: 169 VP--LAGLTKLQNLYLSKNHISD 189

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 42/226 (18%), Positives = 77/226 (34%), Gaps = 46/226 (20%)

Query: 37  IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMA 96
           + +   L +L  L  L L     N  +  S L ++  L  L+L                 
Sbjct: 77  LTDIKPLTNLKNLGWLFL---DENKIKDLSSLKDLKKLKSLSLEH--------------- 118

Query: 97  RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALD 156
                    N  S  I+ +   HL  L    L +N +         +  + S  +   LD
Sbjct: 119 ---------NGIS-DINGL--VHLPQLESLYLGNNKIT--------DITVLSRLTK--LD 156

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
           TL L  N++   +P++   L KL +L LS N++     L  +  L NL  L+L      +
Sbjct: 157 TLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQEC-L 210

Query: 217 DESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 262
           ++   + S   +   +      L     + +    +   +  +   
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.6 bits (212), Expect = 2e-18
 Identities = 51/286 (17%), Positives = 97/286 (33%), Gaps = 32/286 (11%)

Query: 159 DLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDE 218
             S   L  SIP  + E   + SL LS+N +   +    +    NL  L L+ N +   E
Sbjct: 37  KGSSGSLN-SIPSGLTE--AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIE 92

Query: 219 SSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSV 274
                SFS    LE L+L+   L  + +   K  S L +L L  N     +        +
Sbjct: 93  ED---SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL 148

Query: 275 VGLHCLNLSHNLLVGF---QGPYSIPALRFIDLSSHQLR----GNIHQLPNNLIYIDFSN 327
             L  L + +         +    +  L  +++ +  L+     ++  + N + ++    
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN-VSHLILHM 207

Query: 328 NNFTSSIPADTGNFMPRLRYFCAANNGLTG--------IIPASLCNATTLSLLDLSNNSF 379
                 +     +    +      +  L              SL    T   + +++ S 
Sbjct: 208 KQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 380 MKKSDAFLNCL-LQTLDLNGNRLQGTVPKSI-ANCKMLEVLNLGNN 423
            +          L  L+ + N+L+ +VP  I      L+ + L  N
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 59/312 (18%), Positives = 101/312 (32%), Gaps = 54/312 (17%)

Query: 96  ARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSAL 155
             + +LD S N+ +  IS+   +  +NL   VL+ N +N +I    F       +S  +L
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSF-------SSLGSL 102

Query: 156 DTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           + LDLS N L  ++  S F+ L  LT L L  N      +     +L  L  L +     
Sbjct: 103 EHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 215 AVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRV 272
                 ++++    LE L + +  L+      LK+   + +L L   Q    +       
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVD- 219

Query: 273 SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTS 332
               + CL L    L  F     +       L                  +  ++ +   
Sbjct: 220 VTSSVECLELRDTDLDTFHFS-ELSTGETNSLIKK----------FTFRNVKITDESLFQ 268

Query: 333 SIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL-- 390
                                     +   L   + L  L+ S N      D   + L  
Sbjct: 269 --------------------------VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302

Query: 391 LQTLDLNGNRLQ 402
           LQ + L+ N   
Sbjct: 303 LQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 9e-15
 Identities = 55/321 (17%), Positives = 98/321 (30%), Gaps = 54/321 (16%)

Query: 62  TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
             IPS L    ++  L+LS+          +     L AL  + N  + +I    +  L 
Sbjct: 44  NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLG 100

Query: 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF-ELKKLT 180
           +L +  LS N L  ++  S F          S+L  L+L GN  +     S+F  L KL 
Sbjct: 101 SLEHLDLSYNYL-SNLSSSWF-------KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR 240
            L + + +    +Q      L  L +L++  +                          L+
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-------------------------DLQ 187

Query: 241 EIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA 298
                 LK+   + +L L   Q    +           + CL L    L  F     +  
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVD-VTSSVECLELRDTDLDTFHFS-ELST 244

Query: 299 LRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358
                L                  +  ++ +    +       +  L     + N L  +
Sbjct: 245 GETNSLIKK----------FTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQLKSV 292

Query: 359 IPASLCNATTLSLLDLSNNSF 379
                   T+L  + L  N +
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 41/239 (17%), Positives = 69/239 (28%), Gaps = 37/239 (15%)

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSE 258
            +  LDLS N +       N        L+ L L S  +  I      +   L++L LS 
Sbjct: 53  AVKSLDLSNNRI---TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN 318
           N +S    +W   +S   L  LNL  N               F  L              
Sbjct: 110 NYLSNLSSSWFKPLS--SLTFLNLLGNPYKTLG-----ETSLFSHL-------------T 149

Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
            L  +   N +  + I       +  L       + L    P SL +   +S L L    
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209

Query: 379 FMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSI--------ANCKMLEVLNLGNNQFSD 427
            +   + F++    ++ L+L    L       +                + + +     
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 23/156 (14%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLS--------DAGFAGHIPLQISSM 95
            L +L  L +  +         K L +I ++++L L         +        ++   +
Sbjct: 172 GLTFLEELEIDASDL--QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 96  ARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSAL 155
                  F F++ S +  +             ++D SL   + + + +           L
Sbjct: 230 RDTDLDTFHFSELS-TGETNSLIKKFTFRNVKITDESLF-QVMKLLNQIS--------GL 279

Query: 156 DTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLH 190
             L+ S N+L+ S+P  +F+ L  L  + L +N   
Sbjct: 280 LELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 2e-17
 Identities = 56/297 (18%), Positives = 95/297 (31%), Gaps = 16/297 (5%)

Query: 3   WRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGT 62
           W  + +C   + V+    G  +   L        +     +     L+ L +        
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 63  QIPSKLA--NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHL 120
            +   L    IS L  L L +    G  P  +           +    S +        L
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVS----VFEL 176
              +   L   S+  +       F         AL TLDLS N   G   +       + 
Sbjct: 144 QQWLKPGLKVLSIAQA---HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 177 KKLTSLLLSSNNLHGTVQLDKIL--NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNL 234
             L  L L +  +     +   L      L  LDLS+NSL     + +  +   L  LNL
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 235 ASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291
           +   L+++P     ++L  L LS N++ R          +  +  L+L  N  +  +
Sbjct: 261 SFTGLKQVPK-GLPAKLSVLDLSYNRLDRNPSPD----ELPQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 9e-16
 Identities = 49/271 (18%), Positives = 86/271 (31%), Gaps = 30/271 (11%)

Query: 144 FPIFSNASSSALDTLDLSGNRLRGSIPVSVFEL---KKLTSLLLSSNNLHGTVQLDKI-L 199
                   S +L  L +   R+   I      +     L  L L +  + GT     +  
Sbjct: 59  GQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118

Query: 200 NLGNLAKLDLSYNSLAVDESSRNYSFS---PMLELLNLASCKLREIPN--LKNQSQLQYL 254
              +L  L+L   S A  ++          P L++L++A           ++    L  L
Sbjct: 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 255 YLSENQISREIP--NWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN 312
            LS+N    E    + +  +    L  L L +  +    G  S                 
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS----------------A 222

Query: 313 IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL 372
           +      L  +D S+N+   +  A + ++  +L     +  GL  +          LS+L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVL 279

Query: 373 DLSNNSFMKKSDAFLNCLLQTLDLNGNRLQG 403
           DLS N   +         +  L L GN    
Sbjct: 280 DLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 6e-13
 Identities = 58/301 (19%), Positives = 95/301 (31%), Gaps = 38/301 (12%)

Query: 151 SSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLS 210
            SSA + L  +   L G         + L  LL   +      Q   I+   +L +L + 
Sbjct: 24  WSSAFNCLGAADVELYGG-------GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76

Query: 211 YNSL---AVDESSRNYSFSPMLEL----LNLASCKLREIPNLKNQSQLQYLYLSENQIS- 262
              +    +  + R    S + EL    L +       +        L  L L     + 
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG-PDLNILNLRNVSWAT 135

Query: 263 -REIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQLPN- 318
                  + +    GL  L+++    + F        PAL  +DLS +   G    +   
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 319 ------NLIYIDFSNNNFTSSIPADTGNF--MPRLRYFCAANNGLTGIIPASLC-NATTL 369
                  L  +   N    +     +       +L+    ++N L     A  C   + L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 370 SLLDLSNNSFMKKSDAFLNCL---LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
           + L+LS              L   L  LDL+ NRL    P S      +  L+L  N F 
Sbjct: 256 NSLNLSFTGL----KQVPKGLPAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFL 309

Query: 427 D 427
           D
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 10/122 (8%)

Query: 319 NLIYIDFSNNNFTSSIPADTGNF--MPRLRYFCAANNGLTGIIPASLCNATTLSL--LDL 374
           +L  +        S I         +  L+     N  +TG  P  L  AT   L  L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 375 SNNS------FMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK 428
            N S      ++ +   +L   L+ L +          + +     L  L+L +N    +
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 429 FP 430
             
Sbjct: 189 RG 190

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.4 bits (206), Expect = 2e-17
 Identities = 59/399 (14%), Positives = 140/399 (35%), Gaps = 24/399 (6%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGF--AGHIPLQISSMARLVALD 102
               L+ L+L+  +F+   I  +  N+S L +L LS      +  +P+   ++++++ + 
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 103 FSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSG 162
                       ++  +  +L     ++   +  +  S+        ++   +   +   
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 163 NRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN 222
             L     +         +L       +  +++ +++    +    +S   L      R+
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267

Query: 223 YSFS----PMLELLNLASCKLREIPNL--KNQSQLQYLYLSENQISREIPNWIWRVSVVG 276
           + +S      L +  + S       +   +  S +     + +     +        +  
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPS-KISP 325

Query: 277 LHCLNLSHNLL--VGFQGPYSIPALRFIDLSSHQLR------GNIHQLPNNLIYIDFSNN 328
              L+ S+NLL    F+    +  L  + L  +QL+          Q+ + L  +D S N
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS-LQQLDISQN 384

Query: 329 NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFL 387
           + +        ++   L     ++N LT  I   L     + +LDL +N           
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVK 442

Query: 388 NCLLQTLDLNGNRLQGTVPKSI-ANCKMLEVLNLGNNQF 425
              LQ L++  N+L+ +VP  I      L+ + L  N +
Sbjct: 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 65/316 (20%), Positives = 113/316 (35%), Gaps = 41/316 (12%)

Query: 24  IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPS--KLANISSLTYLNLSD 81
           I   L     S  +   A L +   L +L L              +L   +++ Y ++S+
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 82  AGFAGHIPLQI-----SSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGS 136
               G +  +      +S+  L       + F     S  +E   N+     + +     
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTR-- 313

Query: 137 IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF-ELKKLTSLLLSSNNLHG-TVQ 194
               M      S  S      LD S N L           L +L +L+L  N L   +  
Sbjct: 314 ----MVHMLCPSKISP--FLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 195 LDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYL 254
            +    + +L +LD+S NS++ DE   + S++  L  LN++S  L +        +++ L
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426

Query: 255 YLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH 314
            L  N+I   IP  + ++    L  LN++ N L       S+P   F  L+S        
Sbjct: 427 DLHSNKIKS-IPKQVVKLE--ALQELNVASNQLK------SVPDGIFDRLTS-------- 469

Query: 315 QLPNNLIYIDFSNNNF 330
                L  I    N +
Sbjct: 470 -----LQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 65/360 (18%), Positives = 122/360 (33%), Gaps = 31/360 (8%)

Query: 75  TYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLN 134
             ++ S  G   H+P  +S   +   L+ S N  S  + +     L  L   ++S N + 
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 135 GSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ 194
             +  S+F+F       +  L+ LDLS N+L     +S      L  L LS N       
Sbjct: 59  -YLDISVFKF-------NQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPI 107

Query: 195 LDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYL 254
             +  N+  L  L LS   L    S    +   + ++L +      E  + +        
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

Query: 255 YLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH 314
            L     + +  ++I  VSV  +  L LS+      +         +      +L+ N  
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLELSN-----IKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 315 QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGII-----PASLCNATTL 369
                L  I+ + N+F   +      +   + YF  +N  L G +       S  +   L
Sbjct: 222 LSNLTLNNIETTWNSFIRIL---QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 370 SLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
           S+  + ++ F             +   +   +  +       +       L+  NN  +D
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 16/149 (10%)

Query: 45  SLHYLRSLNLARTSFNG-TQIPSKLANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALD 102
            L  L +L L        ++I      + SL  L++S    +        S    L++L+
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 103 FSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSG 162
            S N  + +I       +  L    L  N +  SIP+ + +          AL  L+++ 
Sbjct: 406 MSSNILTDTIFRCLPPRIKVLD---LHSNKIK-SIPKQVVKLE--------ALQELNVAS 453

Query: 163 NRLRGSIPVSVFE-LKKLTSLLLSSNNLH 190
           N+L+ S+P  +F+ L  L  + L +N   
Sbjct: 454 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 13/146 (8%)

Query: 293 PYSIPA-LRFIDLSSHQLR----GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRY 347
           P  +      +++S + +      +I  L   L  +  S+N     +      F   L Y
Sbjct: 16  PKDLSQKTTILNISQNYISELWTSDILSLSK-LRILIISHNRIQY-LDISVFKFNQELEY 73

Query: 348 FCAANNGLTGIIPASLCNATTLSLLDLSNNSF--MKKSDAFLNCL-LQTLDLNGNRLQGT 404
              ++N L  I          L  LDLS N+F  +     F N   L+ L L+   L+ +
Sbjct: 74  LDLSHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 405 VPKSIANCKMLEVLNLGNNQFSDKFP 430
               IA+  + +VL +    + +K  
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKED 156

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 48/229 (20%), Positives = 81/229 (35%), Gaps = 30/229 (13%)

Query: 203 NLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSE 258
              ++ L  N ++        SF     L +L L S  L  I        + L+ L LS+
Sbjct: 33  ASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN 318
           N   R +    +   +  LH L+L    L        +    F  L+             
Sbjct: 90  NAQLRSVDPATFH-GLGRLHTLHLDRCGLQ------ELGPGLFRGLA------------- 129

Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
            L Y+   +N   + +P DT   +  L +     N ++ +   +     +L  L L  N 
Sbjct: 130 ALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 379 FMK-KSDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425
                  AF +   L TL L  N L     +++A  + L+ L L +N +
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 6e-15
 Identities = 54/218 (24%), Positives = 81/218 (37%), Gaps = 23/218 (10%)

Query: 49  LRSLNLARTSFNGTQIPSK-LANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDFSFN 106
            + + L       + +P+       +LT L L     A  I     + +A L  LD S N
Sbjct: 34  SQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 107 QFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR 166
               S+    +  L  L    L    L   +   +F          +AL  L L  N L+
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLF-------RGLAALQYLYLQDNALQ 142

Query: 167 GSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSF 225
            ++P   F  L  LT L L  N +  +V       L +L +L L  N +A        +F
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPH---AF 197

Query: 226 SPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSEN 259
             +  L  L L +  L  +P   L     LQYL L++N
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 37/206 (17%), Positives = 64/206 (31%), Gaps = 25/206 (12%)

Query: 225 FSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL 282
                + + L   ++  +P    +    L  L+L  N ++  I    +   +  L  L+L
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFT-GLALLEQLDL 87

Query: 283 SHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFM 342
           S N  +      S+    F  L               L  +          +       +
Sbjct: 88  SDNAQLR-----SVDPATFHGLG-------------RLHTLHLDRCGLQE-LGPGLFRGL 128

Query: 343 PRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFLNCL-LQTLDLNGNR 400
             L+Y    +N L  +   +  +   L+ L L  N        AF     L  L L+ NR
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 401 LQGTVPKSIANCKMLEVLNLGNNQFS 426
           +    P +  +   L  L L  N  S
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 26/192 (13%)

Query: 238 KLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSI 296
            L+ +P  +   +  Q ++L  N+IS              L  L L  N+L        I
Sbjct: 22  GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACR--NLTILWLHSNVLA------RI 71

Query: 297 PALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT 356
            A  F  L+              L  +D S+N    S+   T + + RL        GL 
Sbjct: 72  DAAAFTGLA-------------LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 357 GIIPASLCNATTLSLLDLSNNSFMK-KSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKM 414
            + P        L  L L +N+      D F +   L  L L+GNR+     ++      
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 415 LEVLNLGNNQFS 426
           L+ L L  N+ +
Sbjct: 179 LDRLLLHQNRVA 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 9e-16
 Identities = 50/292 (17%), Positives = 90/292 (30%), Gaps = 37/292 (12%)

Query: 156 DTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLA 215
                  +++   IP  +   +    L      L   +Q       G+L K+++S N + 
Sbjct: 12  RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL 67

Query: 216 VDESSRNYSFSPMLELLNL---ASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIW 270
             E      FS + +L  +    +  L  I     +N   LQYL +S   I + +P+   
Sbjct: 68  --EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHK 124

Query: 271 RVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNF 330
             S+     L++  N+ +      +I    F              L    + +  + N  
Sbjct: 125 IHSL-QKVLLDIQDNINIH-----TIERNSF------------VGLSFESVILWLNKNGI 166

Query: 331 TSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL 390
              I     N         + NN L  +       A+   +LD+S           L  L
Sbjct: 167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 391 --LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
             L+       +    +P ++     L   +L        F  W      LH
Sbjct: 226 KKLRARSTYNLK---KLP-TLEKLVALMEASLTYPSHCCAFANWRRQISELH 273

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 4e-14
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 12/214 (5%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDF 103
               L  + +++            +N+  L  + +  A    +I  +   ++  L  L  
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN 163
           S       +  +   H L  V   + DN    +I R+ F         S     L L+ N
Sbjct: 112 SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV------GLSFESVILWLNKN 164

Query: 164 RLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNY 223
            ++  I  S F   +L  L LS NN    +  D          LD+S   +    S  +Y
Sbjct: 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI---HSLPSY 220

Query: 224 SFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS 257
               + +L   ++  L+++P L+    L    L+
Sbjct: 221 GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 20/176 (11%)

Query: 89  PLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS 148
            +  + M  L  +  +    +  ++ I  E+  N+    +++       P         S
Sbjct: 37  NITEAQMNSLTYITLANINVT-DLTGI--EYAHNIKDLTINNIHATNYNP--------IS 85

Query: 149 NASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLD 208
             S+  L+ L + G  +      ++  L  LT L +S +    +  L KI  L  +  +D
Sbjct: 86  GLSN--LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSID 142

Query: 209 LSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 262
           LSYN    D          +  L+ LN+    + +   +++  +L  LY     I 
Sbjct: 143 LSYNGAITDIMP----LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 23/188 (12%), Positives = 58/188 (30%), Gaps = 15/188 (7%)

Query: 243 PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFI 302
              K         L ++  +      I    +  L  + L++  +    G      ++ +
Sbjct: 20  STFK---AYLNGLLGQSSTAN-----ITEAQMNSLTYITLANINVTDLTGIEYAHNIKDL 71

Query: 303 DLSSHQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360
            +++        I  L N L  +     + TS    +    +  L     +++     I 
Sbjct: 72  TINNIHATNYNPISGLSN-LERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSIL 129

Query: 361 ASLCNATTLSLLDLSNNSFMKKSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
             +     ++ +DLS N  +           L++L++  + +     + I +   L  L 
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLY 187

Query: 420 LGNNQFSD 427
             +     
Sbjct: 188 AFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 28/207 (13%), Positives = 64/207 (30%), Gaps = 40/207 (19%)

Query: 175 ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNL 234
             K   + LL  ++            + +L  + L+  ++          ++  ++ L +
Sbjct: 21  TFKAYLNGLLGQSS----TANITEAQMNSLTYITLANINV---TDLTGIEYAHNIKDLTI 73

Query: 235 ASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPY 294
            +        +   S L+ L +    ++ +                NLS           
Sbjct: 74  NNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-------------NLSG---------- 110

Query: 295 SIPALRFIDLSSHQLRG----NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCA 350
            + +L  +D+S           I+ LP  +  ID S N   + I       +P L+    
Sbjct: 111 -LTSLTLLDISHSAHDDSILTKINTLP-KVNSIDLSYNGAITDIMPLKT--LPELKSLNI 166

Query: 351 ANNGLTGIIPASLCNATTLSLLDLSNN 377
             +G+       + +   L+ L   + 
Sbjct: 167 QFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 17/155 (10%)

Query: 36  GIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSM 95
            + +   +   H ++ L +   +       + ++ +S+L  L +            +S +
Sbjct: 55  NVTDLTGIEYAHNIKDLTI---NNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 96  ARLVALDFSFNQFSGS-ISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSA 154
             L  LD S +    S ++ I    L  +    LS N     I             +   
Sbjct: 112 TSLTLLDISHSAHDDSILTKI--NTLPKVNSIDLSYNGAITDIM---------PLKTLPE 160

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNL 189
           L +L++  + +     +   +  KL  L   S  +
Sbjct: 161 LKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 342 MPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGN 399
           M  L Y   AN  +T +    +  A  +  L ++N      +   ++ L  L+ L + G 
Sbjct: 43  MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGK 98

Query: 400 RLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439
            +      +++    L +L++ ++   D     +   P +
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 43/250 (17%), Positives = 99/250 (39%), Gaps = 18/250 (7%)

Query: 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 235
             +     L   ++   V  +    L ++ ++  + + +   +S +   + P +  L L 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 236 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS 295
             KL +I  L N   L +L+L EN++  ++ +      +  L  L+L HN +    G   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVK-DLSS---LKDLKKLKSLSLEHNGISDINGLVH 132

Query: 296 IPALRFIDLSSHQLRGNIHQLPN--NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANN 353
           +P L  + L ++++  +I  L     L  +   +N  +  +P      + +L+    + N
Sbjct: 133 LPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVPLAG---LTKLQNLYLSKN 188

Query: 354 GLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCK 413
            ++ +    L     L +L+L +   + K     + L+    +         P+ I++  
Sbjct: 189 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 246

Query: 414 MLEVLNLGNN 423
             E  N+  +
Sbjct: 247 DYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 35/250 (14%), Positives = 79/250 (31%), Gaps = 18/250 (7%)

Query: 180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL 239
           +  +     +    Q+          K +L   S+    +         ++ +   +  +
Sbjct: 5   SETITVPTPIK---QIFSDDAFAETIKDNLKKKSVTDAVTQNEL---NSIDQIIANNSDI 58

Query: 240 REIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPAL 299
           + +  ++    +  L+L+ N+++ +I       ++  L  L L  N +        +  L
Sbjct: 59  KSVQGIQYLPNVTKLFLNGNKLT-DIKPL---ANLKNLGWLFLDENKVKDLSSLKDLKKL 114

Query: 300 RFIDLSSHQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG 357
           + + L  + +     +  LP  L  +   NN  T          + +L      +N ++ 
Sbjct: 115 KSLSLEHNGISDINGLVHLPQ-LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISD 170

Query: 358 IIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEV 417
           I+P  L   T L  L LS N             L  L+L             +N  +   
Sbjct: 171 IVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 418 LNLGNNQFSD 427
           +   +     
Sbjct: 229 VKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.9 bits (174), Expect = 6e-14
 Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 26/231 (11%)

Query: 37  IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMA 96
           I+   S  +       NL                ++S+  +  +++     +   I  + 
Sbjct: 14  IKQIFSDDAFAETIKDNL---KKKSVTDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLP 68

Query: 97  RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALD 156
            +  L  + N+ +  I  +   +L NL +  L +N +     + +             L 
Sbjct: 69  NVTKLFLNGNKLT-DIKPL--ANLKNLGWLFLDENKV-----KDLSSLKDLKK-----LK 115

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
           +L L  N +     +    L +L SL L +N +     +  +  L  L  L L  N +  
Sbjct: 116 SLSLEHNGISDINGLV--HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI-- 168

Query: 217 DESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPN 267
                  +    L+ L L+   + ++  L     L  L L   +   +  N
Sbjct: 169 -SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 40/217 (18%), Positives = 85/217 (39%), Gaps = 25/217 (11%)

Query: 118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELK 177
           +     +   L   S+  ++ ++             ++D +  + + ++    +    L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELN----------SIDQIIANNSDIKSVQGIQ--YLP 68

Query: 178 KLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 237
            +T L L+ N L     +  + NL NL  L L  N +    S ++      L+ L+L   
Sbjct: 69  NVTKLFLNGNKL---TDIKPLANLKNLGWLFLDENKVKDLSSLKDL---KKLKSLSLEHN 122

Query: 238 KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIP 297
            + +I  L +  QL+ LYL  N+I+ +I        +  L  L+L  N +        + 
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKIT-DITV---LSRLTKLDTLSLEDNQISDIVPLAGLT 178

Query: 298 ALRFIDLSSHQLRGNIHQLPN--NLIYIDFSNNNFTS 332
            L+ + LS + +  ++  L    NL  ++  +    +
Sbjct: 179 KLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLN 214

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 14/213 (6%)

Query: 229 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLV 288
               NL    + +       + +  +  + + I   +        +  +  L L+ N L 
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQGI---QYLPNVTKLFLNGNKLT 81

Query: 289 GFQGPYSIPALRFIDLSSHQLRGNIHQLPN--NLIYIDFSNNNFTSSIPADTGNFMPRLR 346
             +   ++  L ++ L  ++++ ++  L +   L  +   +N  +          +P+L 
Sbjct: 82  DIKPLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGISDINGLVH---LPQLE 137

Query: 347 YFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVP 406
                NN +T I    L   T L  L L +N             LQ L L+ N +  +  
Sbjct: 138 SLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI--SDL 193

Query: 407 KSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439
           +++A  K L+VL L + +  +K      +    
Sbjct: 194 RALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 34/204 (16%), Positives = 74/204 (36%), Gaps = 16/204 (7%)

Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
           P+          +++I +    ++     L +  ++  +        +  +  +  +++ 
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSD 57

Query: 287 LVGFQGPYSIPALRFIDLSSHQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPR 344
           +   QG   +P +  + L+ ++L     +  L  NL ++    N             + +
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLK-NLGWLFLDENKVKDLSSLKD---LKK 113

Query: 345 LRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL-LQTLDLNGNRLQG 403
           L+     +NG++ I    L +   L  L L NN  +           L TL L  N++  
Sbjct: 114 LKSLSLEHNGISDING--LVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQI-- 168

Query: 404 TVPKSIANCKMLEVLNLGNNQFSD 427
           +    +A    L+ L L  N  SD
Sbjct: 169 SDIVPLAGLTKLQNLYLSKNHISD 192

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 6e-15
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 30/222 (13%)

Query: 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDL 160
           LD SFN     + S  +     L    LS   +  +I    +        S S L TL L
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAY-------QSLSHLSTLIL 83

Query: 161 SGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDES 219
           +GN ++ S+ +  F  L  L  L+    NL  +++   I +L  L +L++++N +   + 
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 220 SRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQY----LYLSENQISREIPNWIWRVS 273
              +S    LE L+L+S K++ I    L+   Q+      L LS N +   I        
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGA--FK 198

Query: 274 VVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ---LRGN 312
            + L  L L  N L       S+P   F  L+S Q   L  N
Sbjct: 199 EIRLKELALDTNQLK------SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 54/274 (19%), Positives = 86/274 (31%), Gaps = 74/274 (27%)

Query: 155 LDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNS 213
              LDLS N LR  +    F    +L  L LS   +  T++     +L +L+ L L+ N 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 214 LAVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWI 269
           +    S    +FS    L+ L      L  + N  + +   L+ L ++ N I        
Sbjct: 88  IQ---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPE 143

Query: 270 WRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNN 329
           +  ++  L  L+LS N +       SI       L         HQ+P   + +D S N 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ------SIYCTDLRVL---------HQMPLLNLSLDLSLNP 188

Query: 330 FTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNC 389
                                        I                         AF   
Sbjct: 189 MNF--------------------------IQP----------------------GAFKEI 200

Query: 390 LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNN 423
            L+ L L+ N+L+            L+ + L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 50/234 (21%)

Query: 62  TQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHL 120
             + S    +   L  L+LS                          +   +I    ++ L
Sbjct: 41  RHLGSYSFFSFPELQVLDLSR------------------------CEIQ-TIEDGAYQSL 75

Query: 121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKL 179
            +L   +L+ N +  S+    F       +  S+L  L      L  S+       LK L
Sbjct: 76  SHLSTLILTGNPIQ-SLALGAF-------SGLSSLQKLVAVETNLA-SLENFPIGHLKTL 126

Query: 180 TSLLLSSNNLHGTVQLDKIL-NLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL------L 232
             L ++ N +  + +L +   NL NL  LDLS N +   +S        + ++      L
Sbjct: 127 KELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKI---QSIYCTDLRVLHQMPLLNLSL 182

Query: 233 NLASCKLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 285
           +L+   +  I      + +L+ L L  NQ+   +P+ I+   +  L  + L  N
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFD-RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 44/207 (21%), Positives = 73/207 (35%), Gaps = 32/207 (15%)

Query: 229 LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
            + L+L+   LR + +    +  +LQ L LS  +I   I +  ++ S+  L  L L+ N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQ-SLSHLSTLILTGNP 87

Query: 287 LVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLR 346
           +       S+    F  LS             +L  +     N  S +       +  L+
Sbjct: 88  IQ------SLALGAFSGLS-------------SLQKLVAVETNLAS-LENFPIGHLKTLK 127

Query: 347 YFCAANNGLTGIIPASLC-NATTLSLLDLSNNSFMK-KSDAF-----LNCLLQTLDLNGN 399
               A+N +          N T L  LDLS+N               +  L  +LDL+ N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 400 RLQGTVPKSIANCKMLEVLNLGNNQFS 426
            +   +         L+ L L  NQ  
Sbjct: 188 PMN-FIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 10/142 (7%)

Query: 293 PYSIPA-LRFIDLSSHQLR----GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRY 347
           P ++P   + +DLS + LR     +    P  L  +D S     + I       +  L  
Sbjct: 23  PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQT-IEDGAYQSLSHLST 80

Query: 348 FCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFLNCL-LQTLDLNGNRLQG-T 404
                N +  +   +    ++L  L     +    ++    +   L+ L++  N +Q   
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 405 VPKSIANCKMLEVLNLGNNQFS 426
           +P+  +N   LE L+L +N+  
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 69/377 (18%), Positives = 117/377 (31%), Gaps = 39/377 (10%)

Query: 72  SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN 131
              + ++ S+     H+P  +    +  AL  S N  S  +       L  L    LS N
Sbjct: 31  ELESMVDYSNRNLT-HVPKDLPPRTK--ALSLSQNSIS-ELRMPDISFLSELRVLRLSHN 86

Query: 132 SLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHG 191
            +  S+   +F F       +  L+ LD+S NRL+ +I      +  L  L LS N+   
Sbjct: 87  RIR-SLDFHVFLF-------NQDLEYLDVSHNRLQ-NISCCP--MASLRHLDLSFNDFDV 135

Query: 192 TVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQS-Q 250
                +  NL  L  L LS       +            LL+L S  ++       Q   
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195

Query: 251 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR 310
              L+L  +  S  + +    +SV  L  L LS+  L        +  L  +      L 
Sbjct: 196 TTVLHLVFHPNS--LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253

Query: 311 GNIHQLPNN---------------LIYIDFSNNNFTSSIPADTGNF----MPRLRYFCAA 351
             +  +                  + Y++  N   T  I  +   +    +  L      
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 352 NNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSI 409
           N        A       +++  LS +                  L+   N    +V +  
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373

Query: 410 ANCKMLEVLNLGNNQFS 426
           +  K L+ L L  N   
Sbjct: 374 STLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 61/378 (16%), Positives = 136/378 (35%), Gaps = 29/378 (7%)

Query: 70  NISSLTYLNLSDAGFAGHIPL--QISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127
            ++SL +L+LS   F   +P+  +  ++ +L  L  S  +       +    + +L  + 
Sbjct: 119 PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAK----FRQLDLLPVAHLHLSC 173

Query: 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSN 187
           +  + ++  I     E     N +   L     S   ++ ++ V+     +L+++ L+  
Sbjct: 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233

Query: 188 NLHG-TVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSF--SPMLELLNLASCKLREIPN 244
           N       L ++     L  + L +       S + + F     +E LN+ +  + E  +
Sbjct: 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293

Query: 245 LKNQS-------QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLL-VGFQGPYSI 296
            +  +        L   ++            ++      ++   LS +            
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLF-SKEALYS-VFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 297 PA-LRFIDLSSHQL----RGNIHQLPNNLIYIDFSNNNFTS-SIPADTGNFMPRLRYFCA 350
           P+   F++ + +            L   L  +    N   +    A     M  L     
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 351 ANNGLTGIIPASLCN-ATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSI 409
           + N L        C  A ++ +L+LS+N         L   ++ LDL+ NR+  ++PK +
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDV 469

Query: 410 ANCKMLEVLNLGNNQFSD 427
            + + L+ LN+ +NQ   
Sbjct: 470 THLQALQELNVASNQLKS 487

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 49/332 (14%), Positives = 108/332 (32%), Gaps = 30/332 (9%)

Query: 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDL 160
           L F  N       ++    L +L  + +  N  N     +     +    +   +    +
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTLQHI 259

Query: 161 SGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKI----LNLGNLAKLDLSYNSLAV 216
                        F  + +  L + +  +   +  ++       L +L    +       
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 217 DESSRNYSFSPMLEL-LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVV 275
            + +    F+ M    L+++      +    + S   +L  ++N  +  +       ++ 
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS--TLK 377

Query: 276 GLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIP 335
            L  L L  N L       +   +  +  +   L             +D S N+  S   
Sbjct: 378 RLQTLILQRNGLK------NFFKVALMTKNMSSLE-----------TLDVSLNSLNSHAY 420

Query: 336 ADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLN-CLLQTL 394
             T  +   +     ++N LTG +   L     + +LDL NN  M       +   LQ L
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSIPKDVTHLQALQEL 478

Query: 395 DLNGNRLQGTVPKSI-ANCKMLEVLNLGNNQF 425
           ++  N+L+ +VP  +      L+ + L +N +
Sbjct: 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 59/318 (18%), Positives = 109/318 (34%), Gaps = 41/318 (12%)

Query: 22  HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPS--KLANISSLTYLNL 79
            +  + L+ E+    +   + L     L ++ L              +      + YLN+
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 80  SDAGFAGHIPLQI-----SSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLN 134
            +      I  +      +++  L+        F  S  ++ +     +   +LS +   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL-YSVFAEMNIKMLSISDTP 342

Query: 135 GSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHG-T 192
                         + SS     L+ + N             LK+L +L+L  N L    
Sbjct: 343 ------FIHMVCPPSPSS--FTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 193 VQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQ 252
                  N+ +L  LD+S NSL      R  +++  + +LNL+S  L          +++
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVK 453

Query: 253 YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN 312
            L L  N+I   IP  +  +    L  LN++ N L       S+P   F  L+S      
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQ--ALQELNVASNQLK------SVPDGVFDRLTS------ 498

Query: 313 IHQLPNNLIYIDFSNNNF 330
                  L YI   +N +
Sbjct: 499 -------LQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 56/365 (15%), Positives = 120/365 (32%), Gaps = 17/365 (4%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85
           L LS            +   L  +    ++     G     ++ N + L  +   ++ F+
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 86  GHIPLQISSMARLVALDFSFNQFS-GSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF 144
             + + ++++  L   +   N  +   + +   E         ++   +  +   S    
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS---V 267

Query: 145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTV----QLDKILN 200
            +F       ++ L++    +   I    F   +     L   ++   V    +      
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327

Query: 201 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP--NLKNQSQLQYLYLSE 258
              +    LS +           S S     LN       +          +LQ L L  
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSS-FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLL--VGFQGPYSIPA-LRFIDLSSHQLRGNI-H 314
           N +       +   ++  L  L++S N L    +    +    +  ++LSS+ L G++  
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 315 QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDL 374
            LP  +  +D  NN   S IP D  + +  L+    A+N L  +        T+L  + L
Sbjct: 447 CLPPKVKVLDLHNNRIMS-IPKDVTH-LQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504

Query: 375 SNNSF 379
            +N +
Sbjct: 505 HDNPW 509

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.4 bits (175), Expect = 9e-14
 Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 20/166 (12%)

Query: 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSS 186
           LS N+L   +          +  ++  L +L LS N L   I    F  +  L  L LSS
Sbjct: 46  LSHNNL-SRLRAEWT----PTRLTN--LHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 187 NNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIP- 243
           N+LH T+      +L  L  L L  N +         +F     L+ L L+  ++   P 
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 244 ----NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 285
               +     +L  L LS N++ +     + ++     + L L +N
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 8e-13
 Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 18/167 (10%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLS 210
            S    LDLS N L           L  L SLLLS N+L+  +  +  + + NL  LDLS
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 211 YNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIP 266
            N L    +   + FS +  LE+L L +  +  +     ++ +QLQ LYLS+NQISR  P
Sbjct: 97  SNHL---HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FP 152

Query: 267 NWIWR--VSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG 311
             + +    +  L  L+LS N L        +P      L +    G
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLK------KLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 42/184 (22%), Positives = 65/184 (35%), Gaps = 28/184 (15%)

Query: 249 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ 308
           S    L LS N +SR    W     +  LH L LSHN L        I +  F+ +    
Sbjct: 39  SYTALLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHLN------FISSEAFVPVP--- 88

Query: 309 LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATT 368
                     NL Y+D S+N+  + +     + +  L      NN +  +   +  +   
Sbjct: 89  ----------NLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 369 LSLLDLSNNSFMK-KSDAFLNC----LLQTLDLNGNRLQGTVPKSIANCKML--EVLNLG 421
           L  L LS N   +   +   +      L  LDL+ N+L+      +          L L 
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 422 NNQF 425
           NN  
Sbjct: 198 NNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 40/184 (21%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ 260
             A LDLS+N+L+   +    +    L  L L+   L  I +        L+YL LS N 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNL 320
           +   +  +++   +  L  L L +N +V       +    F D++              L
Sbjct: 100 L-HTLDEFLFS-DLQALEVLLLYNNHIV------VVDRNAFEDMA-------------QL 138

Query: 321 IYIDFSNNNFTSSIPADT---GNFMPRLRYFCAANNGLTGIIPASLCNATTLSL--LDLS 375
             +  S N  +   P +    GN +P+L     ++N L  +    L          L L 
Sbjct: 139 QKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 376 NNSF 379
           NN  
Sbjct: 198 NNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 316 LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLS 375
           LP+    +D S+NN +      T   +  L     ++N L  I   +      L  LDLS
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 376 NNSFMK-KSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
           +N         F +   L+ L L  N +      +  +   L+ L L  NQ S
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 34/219 (15%), Positives = 71/219 (32%), Gaps = 19/219 (8%)

Query: 98  LVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDT 157
              L         +I S  + +L N+    +S +     +    F        + S +  
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSF-------YNLSKVTH 84

Query: 158 LDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
           +++   R    I     + L  L  L + +  L     L K+ +      L+++ N    
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY-- 142

Query: 217 DESSRNYSFSPM---LELLNLASCKLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRV 272
             S    +F  +      L L +     +     N ++L  +YL++N+    I    +  
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 273 SVVGLHCLNLSHNLLVGFQ--GPYSIPALRFIDLSSHQL 309
              G   L++S   +      G   +  L     ++  L
Sbjct: 203 VYSGPSLLDVSQTSVTALPSKGLEHLKELIA--RNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 47/276 (17%), Positives = 82/276 (29%), Gaps = 76/276 (27%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLS 210
             +  TL L    LR +IP   F  L  ++ + +S +     ++     NL  +  +++ 
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 211 YNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNW 268
                                       L  I    LK    L++L +    + +  P+ 
Sbjct: 89  NT------------------------RNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDL 123

Query: 269 IWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNN 328
               S      L ++ N  +      SIP   F  L             N  + +   NN
Sbjct: 124 TKVYSTDIFFILEITDNPYMT-----SIPVNAFQGL------------CNETLTLKLYNN 166

Query: 329 NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK--SDAF 386
            FTS                          +     N T L  + L+ N ++     DAF
Sbjct: 167 GFTS--------------------------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 387 --LNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNL 420
             +      LD++   +     K + + K L   N 
Sbjct: 201 GGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 28/198 (14%)

Query: 232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291
             +    ++ IP+L      Q L L E  +   IP+  +  ++  +  + +S ++ +   
Sbjct: 16  FRVTCKDIQRIPSL--PPSTQTLKLIETHLR-TIPSHAFS-NLPNISRIYVSIDVTLQ-- 69

Query: 292 GPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAA 351
               + +  F +LS              + +I+  N    + I  D    +P L++    
Sbjct: 70  ---QLESHSFYNLS-------------KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 352 NNGLTGIIPASLCNATT-LSLLDLSNNSFMKK--SDAF--LNCLLQTLDLNGNRLQGTVP 406
           N GL      +   +T    +L++++N +M     +AF  L     TL L  N    +V 
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ 172

Query: 407 KSIANCKMLEVLNLGNNQ 424
               N   L+ + L  N+
Sbjct: 173 GYAFNGTKLDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 37/281 (13%), Positives = 85/281 (30%), Gaps = 80/281 (28%)

Query: 153 SALDTLDLSGNRLRG--SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLS 210
              +   ++   ++   S+P S        +L L   +L  T+      NL N++++ +S
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPPS------TQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 211 YNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNW 268
            +                          L+++ +    N S++ ++ +   +    I   
Sbjct: 64  ID------------------------VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99

Query: 269 IWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNN 328
             +  +  L  L + +  L         P L  +  +            +    ++ ++N
Sbjct: 100 ALK-ELPLLKFLGIFNTGLK------MFPDLTKVYST------------DIFFILEITDN 140

Query: 329 NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFL 387
            + +SIP +    +                             L L NN F   +  AF 
Sbjct: 141 PYMTSIPVNAFQGLCNE-----------------------TLTLKLYNNGFTSVQGYAFN 177

Query: 388 NCLLQTLDLNGNRLQGTVPKSI--ANCKMLEVLNLGNNQFS 426
              L  + LN N+    + K           +L++     +
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 34/172 (19%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103
           +L  +  + +  T  N T I    L  +  L +L + +                      
Sbjct: 78  NLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFN---------------------- 114

Query: 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN 163
                       +           ++DN    SIP + F          +   TL L  N
Sbjct: 115 --TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF------QGLCNETLTLKLYNN 166

Query: 164 RLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN-LAKLDLSYNSL 214
               S+    F   KL ++ L+ N     +  D    + +  + LD+S  S+
Sbjct: 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.4 bits (165), Expect = 8e-13
 Identities = 38/256 (14%), Positives = 82/256 (32%), Gaps = 43/256 (16%)

Query: 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 235
           L       L   ++   V       L  +   +   +++   +S     F   L+ L+L+
Sbjct: 18  LANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNI---QSLAGMQFFTNLKELHLS 71

Query: 236 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS 295
             ++ ++  LK+ ++L+ L ++ N++   +      +    L  L L +N L        
Sbjct: 72  HNQISDLSPLKDLTKLEELSVNRNRLK-NLNG----IPSACLSRLFLDNNEL-------- 118

Query: 296 IPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355
                  D        ++  L N L  +   NN   S +       + +L       N +
Sbjct: 119 ------RDTD------SLIHLKN-LEILSIRNNKLKSIVMLGF---LSKLEVLDLHGNEI 162

Query: 356 TGIIPASLCNATTLSLLDLSNNSFMKKSDAF---LNCLLQTLDLNGNRLQGTVPKSIANC 412
           T      L     ++ +DL+    + +   +   L       D +G  +    P  I+N 
Sbjct: 163 TNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS---PYYISNG 217

Query: 413 KMLEVLNLGNNQFSDK 428
                  +        
Sbjct: 218 GSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 15/193 (7%)

Query: 238 KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIP 297
            + ++      +      L +  ++  +        + G+   N  ++ +    G     
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLVSQ----KELSGVQNFNGDNSNIQSLAGMQFFT 63

Query: 298 ALRFIDLSSHQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355
            L+ + LS +Q+     +  L   L  +  + N   +     +      L      NN L
Sbjct: 64  NLKELHLSHNQISDLSPLKDLTK-LEELSVNRNRLKNLNGIPSAC----LSRLFLDNNEL 118

Query: 356 TGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKML 415
                  L +   L +L + NN             L+ LDL+GN +  T    +   K +
Sbjct: 119 RDTDS--LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKV 174

Query: 416 EVLNLGNNQFSDK 428
             ++L   +  ++
Sbjct: 175 NWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 22/171 (12%)

Query: 92  ISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS 151
              +A  V  +      +  + S   + L  +      ++++     +S+     F+N  
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVSQ--KELSGVQNFNGDNSNI-----QSLAGMQFFTN-- 64

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
              L  L LS N++    P+   +L KL  L ++ N L     L+ I +   L++L L  
Sbjct: 65  ---LKELHLSHNQISDLSPLK--DLTKLEELSVNRNRLK---NLNGIPSA-CLSRLFLDN 115

Query: 212 NSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 262
           N L     + +      LE+L++ + KL+ I  L   S+L+ L L  N+I+
Sbjct: 116 NEL---RDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 49/228 (21%)

Query: 37  IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMA 96
           I        L      NL                +S +   N  ++     +   +    
Sbjct: 9   INQVFPDPGLANAVKQNL---GKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFT 63

Query: 97  RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALD 156
            L  L  S NQ    IS +    L +L                             + L+
Sbjct: 64  NLKELHLSHNQ----ISDL--SPLKDL-----------------------------TKLE 88

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
            L ++ NRL+    ++      L+ L L +N L      D +++L NL  L +  N L  
Sbjct: 89  ELSVNRNRLKN---LNGIPSACLSRLFLDNNELR---DTDSLIHLKNLEILSIRNNKL-- 140

Query: 217 DESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISRE 264
            +S     F   LE+L+L   ++     L    ++ ++ L+  +   E
Sbjct: 141 -KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE 187

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 3e-12
 Identities = 41/243 (16%), Positives = 90/243 (37%), Gaps = 19/243 (7%)

Query: 102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLS 161
               + F    +    +    L+         + +    +F   + S   S+ L +   S
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL-SVEKSTVLQSELES 370

Query: 162 GNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLD-------LSYNSL 214
              L+   P + + L  +  L+ + + L    + + +     L  +D           S 
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPL--LYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428

Query: 215 AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSV 274
            + E+S        + +L+LA   L  + +L+    + +L LS N++ R +P  +  +  
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL-RALPPALAALR- 486

Query: 275 VGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR-----GNIHQLPNNLIYIDFSNNN 329
             L  L  S N L    G  ++P L+ + L +++L+       +   P  L+ ++   N+
Sbjct: 487 -CLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNS 544

Query: 330 FTS 332
              
Sbjct: 545 LCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 21/203 (10%)

Query: 37  IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA-----GHIPLQ 91
           +E       L  +  +          +     + + ++  +  +              + 
Sbjct: 377 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 92  ISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS 151
               A +  L  +    +  +  +  E LL + +  LS N L  ++P ++        A+
Sbjct: 437 KMEYADVRVLHLAHKDLT-VLCHL--EQLLLVTHLDLSHNRLR-ALPPAL--------AA 484

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
              L+ L  S N L  ++   V  L +L  LLL +N L  +  +  +++   L  L+L  
Sbjct: 485 LRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

Query: 212 NSLAVDESSRNY--SFSPMLELL 232
           NSL  +E  +       P +  +
Sbjct: 543 NSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 51/363 (14%), Positives = 110/363 (30%), Gaps = 55/363 (15%)

Query: 67  KLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA 126
           +  ++    +++  +A  +      ++  +R+  L    ++   S+     +      + 
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHV 299

Query: 127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSS 186
            L D        +            S +     L  +R            ++L    LS 
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSV 358

Query: 187 NNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLK 246
                      + +   L +L+       +       +    L+ L      L+    LK
Sbjct: 359 EKSTVLQSE--LESCKELQELEPENKWCLLTIILLMRA----LDPLLYEKETLQYFSTLK 412

Query: 247 NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSS 306
               ++  YL + +    + N + ++    +  L+L+H  L        +          
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT------VLC--------- 457

Query: 307 HQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNA 366
                ++ QL   + ++D S+N   +                          +P +L   
Sbjct: 458 -----HLEQLLL-VTHLDLSHNRLRA--------------------------LPPALAAL 485

Query: 367 TTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQG-TVPKSIANCKMLEVLNLGNNQF 425
             L +L  S+N+            LQ L L  NRLQ     + + +C  L +LNL  N  
Sbjct: 486 RCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

Query: 426 SDK 428
             +
Sbjct: 546 CQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 6e-09
 Identities = 38/290 (13%), Positives = 77/290 (26%), Gaps = 15/290 (5%)

Query: 147 FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAK 206
                      +      L       +    ++ +LLL  +    +V+          + 
Sbjct: 239 AEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSH 298

Query: 207 LDLSYNSLAVDESSRNYSFSPML--------ELLNLASCKLREIPNLKNQSQLQYLYLSE 258
           + L     A            ++        E + L         +     QL    LS 
Sbjct: 299 VWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSV 358

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN 318
            + +  + + +     +          LL       ++  L +   +       +  +  
Sbjct: 359 EKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDP 416

Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
                     +      +        +R    A+  LT +    L     ++ LDLS+N 
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNR 474

Query: 379 FMKKSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
                 A      L+ L  + N L       +AN   L+ L L NN+   
Sbjct: 475 LRALPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQ 522

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 7e-09
 Identities = 48/230 (20%), Positives = 83/230 (36%), Gaps = 38/230 (16%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS 104
           +   L    L  +    T + S+L +   L  L   +      I L + ++  L+    +
Sbjct: 347 TDEQLFRCEL--SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 105 FNQFSG--SISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSS--------A 154
              FS   ++  +R  +L +L    L +NS+       +    +     +          
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           +  LDLS NRLR ++P ++  L+ L  L  S N L     +D + NL  L +L L  N L
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL---ENVDGVANLPRLQELLLCNNRL 520

Query: 215 AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISRE 264
                                  +   I  L +  +L  L L  N + +E
Sbjct: 521 Q----------------------QSAAIQPLVSCPRLVLLNLQGNSLCQE 548

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 65/429 (15%), Positives = 121/429 (28%), Gaps = 71/429 (16%)

Query: 49  LRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGF----AGHIPLQISSMARLVALDFS 104
           ++SL++     +  +    L  +     + L D G        I   +     L  L+  
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 105 FNQFSGS----ISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDL 160
            N+        +          +    L +  L G+    +      +  +   L  L L
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS----TLRTLPTLQELHL 120

Query: 161 SGNRL--RGSIPVSVFELK---KLTSLLLSSNNL--HGTVQLDKIL-NLGNLAKLDLSYN 212
           S N L   G   +    L    +L  L L   +L       L  +L    +  +L +S N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 213 SL------AVDESSRNYSFSPMLELLNLASCKLRE------IPNLKNQSQLQYLYLSENQ 260
            +       + +  ++      LE L L SC +           + +++ L+ L L  N+
Sbjct: 181 DINEAGVRVLCQGLKDSPCQ--LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 261 ISREIPNWI---WRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLP 317
           +       +          L  L +    +           L         LR       
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGI----TAKGCGDL------CRVLRAK----- 283

Query: 318 NNLIYIDFSNNNFTSS----IPADTGNFMPRLRYFCAANNGLTGIIPASLCNA----TTL 369
            +L  +  + N         +         +L      +   T    +   +       L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 370 SLLDLSNNSFMKK-----SDAFL--NCLLQTLDLNGNRLQGTVPKSIA----NCKMLEVL 418
             L +SNN                   +L+ L L    +  +   S+A        L  L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 419 NLGNNQFSD 427
           +L NN   D
Sbjct: 404 DLSNNCLGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 55/321 (17%), Positives = 100/321 (31%), Gaps = 67/321 (20%)

Query: 152 SSALDTLDLSGNRL-RGSIPVSVFELKKLTSLLLSSNNLH--GTVQLDKIL-NLGNLAKL 207
           S  + +LD+    L        +  L++   + L    L       +   L     LA+L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 208 DLSYNSLAVDESSRN-----YSFSPMLELLNLASCKLREI------PNLKNQSQLQYLYL 256
           +L  N L  D           + S  ++ L+L +C L           L+    LQ L+L
Sbjct: 62  NLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 257 SENQISRE----------IPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSS 306
           S+N +              P          L  L L +  L       S   L      +
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQC-------RLEKLQLEYCSL----SAASCEPL------A 163

Query: 307 HQLRGNIHQLPNNLIYIDFSNNNFTSS----IPADTGNFMPRLRYFCAANNGLT----GI 358
             LR        +   +  SNN+   +    +     +   +L      + G+T      
Sbjct: 164 SVLRAK-----PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 359 IPASLCNATTLSLLDLSNNSFMKK-----SDAFL--NCLLQTLDLNGNRLQGTVPKSIA- 410
           +   + +  +L  L L +N              L  +  L+TL +    +       +  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 411 ---NCKMLEVLNLGNNQFSDK 428
                + L+ L+L  N+  D+
Sbjct: 279 VLRAKESLKELSLAGNELGDE 299

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 67/455 (14%), Positives = 137/455 (30%), Gaps = 87/455 (19%)

Query: 26  LDLSTESIS-GGIENAASLFSLH-YLRSLNLARTSFNGT---QIPSKLANIS-SLTYLNL 79
           + L    ++    ++ +S   ++  L  LNL            +   L   S  +  L+L
Sbjct: 33  VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 92

Query: 80  SDAGF----AGHIPLQISSMARLVALDFSFNQFSGS----ISSIRWEHLLNLVYAVLSDN 131
            +        G +   + ++  L  L  S N    +    +     +    L    L   
Sbjct: 93  QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152

Query: 132 SLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKK-----LTSLLLSS 186
           SL+ +    +         +      L +S N +  +    + +  K     L +L L S
Sbjct: 153 SLSAASCEPLAS----VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 187 NNL--HGTVQLDKIL-NLGNLAKLDLSYNSL----AVDESSRNYSFSPMLELLNLASCKL 239
             +       L  I+ +  +L +L L  N L      +        S  L  L +  C +
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

Query: 240 REI------PNLKNQSQLQYLYLSENQISREIPNWIWRV---SVVGLHCLNLSHNLLVGF 290
                      L+ +  L+ L L+ N++  E    +          L  L +        
Sbjct: 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF-TA 327

Query: 291 QGPYSI-------PALRFIDLSSHQLRGN--------IHQLPNNLIYIDFSNNNFTSSIP 335
                          L  + +S+++L           + Q  + L  +  ++ + +    
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS---- 383

Query: 336 ADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF-------MKKSDAFLN 388
                           ++  + +    L    +L  LDLSNN         + +S     
Sbjct: 384 ----------------DSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426

Query: 389 CLLQTLDLNGNRLQGTVPKSIA----NCKMLEVLN 419
           CLL+ L L        +   +     +   L V++
Sbjct: 427 CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 9e-11
 Identities = 52/178 (29%), Positives = 71/178 (39%), Gaps = 10/178 (5%)

Query: 251 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR 310
              L+LSEN +       +  +    L  LNL    L   Q   ++P L  +DLS +QL+
Sbjct: 33  TTILHLSENLLYTFSLATL--MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 311 ---GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNAT 367
                   LP  L  +D S N  TS +P      +  L+      N L  + P  L    
Sbjct: 91  SLPLLGQTLPA-LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 368 TLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNN 423
            L  L L+NN+  +     LN L  L TL L  N L  T+PK      +L    L  N
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 47/200 (23%), Positives = 68/200 (34%), Gaps = 29/200 (14%)

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 262
           +   L LS N L     +    +   L  LNL   +L ++        L  L LS NQ+ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL- 89

Query: 263 REIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIY 322
           + +P     +    L  L++S N L       S+P      L               L  
Sbjct: 90  QSLPLLGQTLP--ALTVLDVSFNRLT------SLPLGALRGLG-------------ELQE 128

Query: 323 IDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK 382
           +    N    ++P       P+L     ANN LT +    L     L  L L  NS    
Sbjct: 129 LYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--Y 185

Query: 383 S---DAFLNCLLQTLDLNGN 399
           +     F + LL    L+GN
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 14/144 (9%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDF 103
           +L  L +L+L+        +P     + +LT L++S       +PL     +  L  L  
Sbjct: 75  TLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131

Query: 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN 163
             N+   ++          L    L++N+L   +P  +             LDTL L  N
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL-------NGLENLDTLLLQEN 182

Query: 164 RLRGSIPVSVFELKKLTSLLLSSN 187
            L  +IP   F    L    L  N
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 326 SNNNFTS---SIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK 382
              N T+    +P DT            + N L     A+L   T L+ L+L     + K
Sbjct: 18  DKRNLTALPPDLPKDT-------TILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTK 69

Query: 383 SDAFLN-CLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
                   +L TLDL+ N+LQ ++P        L VL++  N+ +
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 14/140 (10%)

Query: 293 PYSIPA-LRFIDLSSHQLR----GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRY 347
           P  +P     + LS + L       +      L  ++      T  +  D    +P L  
Sbjct: 26  PPDLPKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTK-LQVDGT--LPVLGT 81

Query: 348 FCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTV 405
              ++N L  + P        L++LD+S N         L  L  LQ L L GN L+ T+
Sbjct: 82  LDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139

Query: 406 PKSI-ANCKMLEVLNLGNNQ 424
           P  +      LE L+L NN 
Sbjct: 140 PPGLLTPTPKLEKLSLANNN 159

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 33/230 (14%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
           ++  +++D S  +L  +IP ++        L L SN L  ++       L  L  L L+ 
Sbjct: 15  NNNKNSVDCSSKKLT-AIPSNIPA--DTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLND 70

Query: 212 NSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPN 267
           N L    +     F  +  LE L +   KL+ +P         L  L L  NQ+   +P 
Sbjct: 71  NKLQTLPAG---IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPP 126

Query: 268 WIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSN 327
            ++  S+  L  L+L +N L       S+P   F  L+             +L  +   N
Sbjct: 127 RVFD-SLTKLTYLSLGYNELQ------SLPKGVFDKLT-------------SLKELRLYN 166

Query: 328 NNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN 377
           N     +P    + +  L+     NN L  +   +  +   L +L L  N
Sbjct: 167 NQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 44/331 (13%), Positives = 99/331 (29%), Gaps = 69/331 (20%)

Query: 151 SSSALDTLDLSGNRLRG----SIPVSVFELKKLTSLLLSSNNL--HGTVQLDKIL-NLGN 203
           +  +++   L  + +      S+   + E   +  ++LS N +       L + + +  +
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 204 LAKLDLSYNSLAVDESSRNYSFSPM---------LELLNLASCKLREI------PNLKNQ 248
           L   + S       +     +   +         L  + L+               L   
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 249 SQLQYLYLSENQIS-----------REIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIP 297
           + L++LYL  N +            +E+       +   L  +    N L       S+ 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL----ENGSMK 177

Query: 298 ALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFT----SSIPADTGNFMPRLRYFCAANN 353
                   +   + +       L  +    N         +  +   +   L+     +N
Sbjct: 178 EW------AKTFQSH-----RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 354 GLTGI----IPASLCNATTLSLLDLSNN--------SFMKKSDAFLNCLLQTLDLNGNRL 401
             T +    +  +L +   L  L L++         + +       N  LQTL L  N +
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

Query: 402 QGTVPKSIA-----NCKMLEVLNLGNNQFSD 427
           +    +++          L  L L  N+FS+
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 38/288 (13%), Positives = 77/288 (26%), Gaps = 72/288 (25%)

Query: 179 LTSLLLSSNNL--HGTVQLDKIL-NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 235
           +    L  + +       +  +L    ++ ++ LS N++  + +              L+
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARW------------LS 53

Query: 236 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVG--------LHCLNLSHNLL 287
                    + ++  L+    S+    R        + ++         LH + LS N  
Sbjct: 54  EN-------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106

Query: 288 VGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFT------------SSIP 335
               GP +   L         L  +       L ++   NN                   
Sbjct: 107 ----GPTAQEPL------IDFLSKH-----TPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 336 ADTGNFMPRLRYFCAANNGLTGI----IPASLCNATTLSLLDLSNNSFMKK------SDA 385
                  P LR      N L          +  +   L  + +  N    +       + 
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 386 F-LNCLLQTLDLNGNRLQGTVPKSIA----NCKMLEVLNLGNNQFSDK 428
                 L+ LDL  N        ++A    +   L  L L +   S +
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 63/396 (15%), Positives = 110/396 (27%), Gaps = 105/396 (26%)

Query: 44  FSLHYLRSLNLARTSFNGTQ-IPSKLANISSLTYLNLSDAGF----AGHIPLQISSMARL 98
           FS+    SL L   +    + + + L    S+  + LS        A  +   I+S   L
Sbjct: 4   FSIEGK-SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 99  VALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTL 158
              +FS   F+G +     E L  L+ A L                          L T+
Sbjct: 63  EIAEFSDI-FTGRVKDEIPEALRLLLQA-LLKC---------------------PKLHTV 99

Query: 159 DLSGNRL--RGSIPVSVF--ELKKLTSLLLSSNN------------LHGTVQLDKILNLG 202
            LS N        P+  F  +   L  L L +N             L       K  N  
Sbjct: 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 203 NLAKLDLSYNSLAVDESSRN----YSFSPMLELLNLASCKLREI-------PNLKNQSQL 251
            L  +    N L  + S +     +    +L  + +    +R           L    +L
Sbjct: 160 PLRSIICGRNRLE-NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 252 QYLYLSENQISRE--------IPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFID 303
           + L L +N  +          + +W        L  L L+  LL   +G  ++       
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWP------NLRELGLNDCLL-SARGAAAV------- 264

Query: 304 LSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASL 363
                     +     L  +    N                        + +  +     
Sbjct: 265 --VDAFSKLENI---GLQTLRLQYNEIE--------------------LDAVRTLKTVID 299

Query: 364 CNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGN 399
                L  L+L+ N F  + D  ++ + +     G 
Sbjct: 300 EKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGR 334

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 46/278 (16%), Positives = 77/278 (27%), Gaps = 56/278 (20%)

Query: 22  HVIGLDLSTESIS--GGIENAASLFSLHYLRSLNLARTSFN---------GTQIPSKLAN 70
            V  + LS  +I        + ++ S   L     +                 +   L  
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 71  ISSLTYLNLSDAGF----AGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA 126
              L  + LSD  F       +   +S    L  L    N                 +  
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG--------PQAGAKIAR 144

Query: 127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG----SIPVSVFELKKLTSL 182
            L + ++N                ++  L ++    NRL          +    + L ++
Sbjct: 145 ALQELAVNKKA------------KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 183 LLSSNNLH--GTVQL--DKILNLGNLAKLDLSYNSLAVDES---SRNYSFSPMLELLNLA 235
            +  N +   G   L  + +     L  LDL  N+     S   +      P L  L L 
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252

Query: 236 SCKLRE---------IPNLKNQSQLQYLYLSENQISRE 264
            C L              L+N   LQ L L  N+I  +
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELD 289

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 10/113 (8%)

Query: 156 DTLDLSGNRLRGSIPVSVF-ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
             + L  N ++  IP   F   KKL  + LS+N +   +  D    L +L  L L  N +
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 215 AVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISR 263
                     F     L+LL L + K+  +     ++   L  L L +N++  
Sbjct: 93  ---TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)

Query: 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDL 160
           +    N     I    +     L    LS+N ++  +    F+          +L++L L
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQ-------GLRSLNSLVL 87

Query: 161 SGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
            GN++   +P S+FE L  L  LLL++N ++  +++D   +L NL  L L  N L
Sbjct: 88  YGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 37/153 (24%)

Query: 62  TQIPSK-LANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHL 120
             IP    +    L  ++LS+                        NQ S  ++   ++ L
Sbjct: 45  KVIPPGAFSPYKKLRRIDLSN------------------------NQIS-ELAPDAFQGL 79

Query: 121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE-LKKL 179
            +L   VL  N +   +P+S+FE          +L  L L+ N++   + V  F+ L  L
Sbjct: 80  RSLNSLVLYGNKIT-ELPKSLFE-------GLFSLQLLLLNANKIN-CLRVDAFQDLHNL 130

Query: 180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN 212
             L L  N L  T+       L  +  + L+ N
Sbjct: 131 NLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 24/150 (16%)

Query: 232 LNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG 289
           + L    ++ IP        +L+ + LS NQI  E+    ++  +  L+ L L  N +  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQ-GLRSLNSLVLYGNKIT- 93

Query: 290 FQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFC 349
                 +P   F  L              +L  +  + N     +  D    +  L    
Sbjct: 94  -----ELPKSLFEGLF-------------SLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

Query: 350 AANNGLTGIIPASLCNATTLSLLDLSNNSF 379
             +N L  I   +      +  + L+ N F
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 293 PYSIPALRFIDLSSHQLRGN-IHQLP-------NNLIYIDFSNNNFTSSIPADTGNFMPR 344
           P ++P      ++  +L  N I  +P         L  ID SNN  +  +  D    +  
Sbjct: 27  PTNLPE----TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 345 LRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFLN-CLLQTLDLNGNRLQ 402
           L       N +T +  +      +L LL L+ N     + DAF +   L  L L  N+LQ
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 403 GTVPKSIANCKMLEVLNLGNNQF 425
                + +  + ++ ++L  N F
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPF 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 11/115 (9%)

Query: 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDL 160
           L  + N+F+   ++  ++ L  L     S+N +   I    FE        +S ++ + L
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFE-------GASGVNEILL 88

Query: 161 SGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           + NRL  ++   +F+ L+ L +L+L SN +   V  D  + L ++  L L  N +
Sbjct: 89  TSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 156 DTLDLSGNRLRGSIPVSVF-ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
             L L+ N         +F +L +L  +  S+N +   ++         + ++ L+ N L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 215 AVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISR 263
              E+ ++  F     L+ L L S ++  + N      S ++ L L +NQI+ 
Sbjct: 94  ---ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 24/147 (16%)

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ 260
             A+L L+ N   V E++  +   P L  +N ++ K+ +I     +  S +  + L+ N+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNL 320
           +   + + +++  +  L  L L  N +        +    FI LS             ++
Sbjct: 93  L-ENVQHKMFK-GLESLKTLMLRSNRIT------CVGNDSFIGLS-------------SV 131

Query: 321 IYIDFSNNNFTSSIPADTGNFMPRLRY 347
             +   +N  T ++     + +  L  
Sbjct: 132 RLLSLYDNQIT-TVAPGAFDTLHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 24/151 (15%)

Query: 169 IPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM 228
           IP           L L++N             L  L K++ S N +   E     +F   
Sbjct: 30  IPQYT------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---AFEGA 80

Query: 229 LEL--LNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSH 284
             +  + L S +L  + +   K    L+ L L  N+I+  + N  +   +  +  L+L  
Sbjct: 81  SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFI-GLSSVRLLSLYD 138

Query: 285 NLLVGFQGPYSIPALRFIDLSSHQ---LRGN 312
           N +       ++    F  L S     L  N
Sbjct: 139 NQIT------TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 33/150 (22%)

Query: 50  RSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISS--------MARLVAL 101
             L L    F   +       +  L  +N S+         +I+          + +  +
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--------KITDIEEGAFEGASGVNEI 86

Query: 102 DFSFNQFSGSISSIRW---EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTL 158
             + N+    + +++    + L +L   +L  N +   +    F          S++  L
Sbjct: 87  LLTSNR----LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI-------GLSSVRLL 134

Query: 159 DLSGNRLRGSIPVSVFE-LKKLTSLLLSSN 187
            L  N++  ++    F+ L  L++L L +N
Sbjct: 135 SLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 316 LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLS 375
           +P     +  +NN FT          +P+LR    +NN +T I   +   A+ ++ + L+
Sbjct: 30  IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89

Query: 376 NNSFMK-KSDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
           +N     +   F     L+TL L  NR+      S      + +L+L +NQ +
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 7e-08
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 302 IDLSSHQLRGNIHQLPN--NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGII 359
           +  +      ++H LP   NL  +   N      +       +  LR      +GL  + 
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 360 PASLCNATTLSLLDLSNNSFMK-KSDAFLNCLLQTLDLNGNRLQ 402
           P +      LS L+LS N+             LQ L L+GN L 
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 163 NRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN 222
                     +   + LT L + +      ++L  +  LG L  L +  + L        
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL---RFVAP 73

Query: 223 YSFS--PMLELLNLASCKLREIP-NLKNQSQLQYLYLSEN 259
            +F   P L  LNL+   L  +         LQ L LS N
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 15/106 (14%)

Query: 88  IPLQISSMARLVALDFSFNQFSGSISSIRWE---HLLNLVYAVLSDNSLNGSIPRSMFEF 144
               +     L  L     Q    +  +       L  L    +  + L   +    F F
Sbjct: 23  SLHHLPGAENLTELYIENQQ---HLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHF 78

Query: 145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLH 190
                  +  L  L+LS N L  S+     +   L  L+LS N LH
Sbjct: 79  -------TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 359 IPASLCNATTLSLLDLSNNSFMKK--SDAFLNCL-LQTLDLNGNRLQGTVPKSIANCKML 415
               L  A  L+ L + N   ++            L+ L +  + L+   P +      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 416 EVLNLGNNQFS 426
             LNL  N   
Sbjct: 83  SRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 9/103 (8%)

Query: 187 NNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN 244
                   L  +    NL +L +        +         +  L  L +    LR +  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 245 --LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 285
                  +L  L LS N +       +  +S   L  L LS N
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLS---LQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 323 IDFSNNNFTSSIPADTGNFMPRLRY-FCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK 381
           +  + +    S+    G     L   +      L  +    L     L  L +  +    
Sbjct: 13  LRCTRDGALDSLHHLPG--AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 382 -KSDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425
              DAF     L  L+L+ N L+    K++     L+ L L  N  
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 9e-08
 Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 83/325 (25%)

Query: 51  SLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSG 110
           SL+    +    ++ S L         +L       + P ++S +A  +    +      
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLA------ 342

Query: 111 SISSIRWEHLLNLVYAVLSD------NSLNGSIPRSMFE-FPIF---SNASSSALDTL-- 158
                 W++  ++    L+       N L  +  R MF+   +F   ++  +  L  +  
Sbjct: 343 -----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 159 DLSGNRLRGSIPVSVFELKKLTSLLLSSNN-----LHGTVQLD---KILNLGNL-AKLDL 209
           D+  +     + V V +L K  SL+          +   + L+   K+ N   L   +  
Sbjct: 398 DVIKS----DVMVVVNKLHKY-SLVEKQPKESTISIPS-IYLELKVKLENEYALHRSIVD 451

Query: 210 SYNSLAVDESS-------RNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS----E 258
            YN     +S          Y +S      ++    L+ I + +  +  + ++L     E
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYS------HIGH-HLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPY---SIPA--------LRFI-DLSS 306
            +I  +   W    S+     LN    L   F  PY   + P         L F+  +  
Sbjct: 505 QKIRHDSTAWNASGSI-----LNTLQQL--KFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 307 HQLRG---NIHQL----PNNLIYID 324
           + +     ++ ++     +  I+ +
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 54/421 (12%), Positives = 119/421 (28%), Gaps = 137/421 (32%)

Query: 123 LVYAVLSDNSLNGSIPRSMFEFPIF------SNASSSALDTL-----DLSGNRLRG---- 167
           +   V     +     +   +F IF       N+  + L+ L      +  N        
Sbjct: 166 VALDVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 168 -SIPVSVFELK-KLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLS--------------- 210
            +I + +  ++ +L  LL S    +  + L  + N       +LS               
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 211 -----YNSLAVDESSRNYSFSPMLELL-NLASCKLREIP--------------------- 243
                   +++D  S   +   +  LL     C+ +++P                     
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 244 -----NLKN----------QSQLQYLYLSENQ-------ISRE---IPN------WIWRV 272
                N K+          +S L  L  +E +       +      IP       W   +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 273 SVVGLHCLNLSHNLLVGFQGP----YSIPALRFIDLSSHQL-RGNIHQ-----------L 316
               +  +N  H   +  + P     SIP++ +++L         +H+            
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 317 PNNLIYIDFSNNNFTSSI--------PADTGNFMPRLRY----FCAA---NNGLTGIIPA 361
            ++ +   + +  F S I          +       + +    F      ++        
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASG 518

Query: 362 SLCNATTLSLLDLSN-NSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNL 420
           S+ N    +L  L     ++  +D     L+  +    + L       I   K  ++L +
Sbjct: 519 SILN----TLQQLKFYKPYICDNDPKYERLVNAI---LDFLPKIEENLI-CSKYTDLLRI 570

Query: 421 G 421
            
Sbjct: 571 A 571

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 51/324 (15%), Positives = 97/324 (29%), Gaps = 88/324 (27%)

Query: 150 ASSSALDTLDLSGNRLRGSIPVSVFEL-----KKLTSLLLSSNNL--HGTVQLDKIL--N 200
           +    + +LDLS N L     V + +        +TSL LS N+L    + +L +IL   
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 201 LGNLAKLDLSYNSLAVD------ESSRNYSFSPMLELLNLASCKLRE------IPNLKNQ 248
             N+  L+LS N L+        ++     F+  + +L+L                  N 
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFT--ITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 249 -SQLQYLYLSENQISRE----------IPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIP 297
            + +  L L  N +  +                      ++ LNL  N L       +  
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIP-------ANVNSLNLRGNNL----ASKNCA 185

Query: 298 ALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG 357
            L      +  L       P ++  +D S N                             
Sbjct: 186 EL------AKFLASI----PASVTSLDLSANLLGLK--------------------SYAE 215

Query: 358 IIPASLCNATTLSLLDLSNNSFMKKSDAFL------NCLLQTLDLNGNRLQGTVPK---- 407
           +          +  L+L  N     S   L         LQT+ L+ + ++    +    
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275

Query: 408 ---SIANCKMLEVLNLGNNQFSDK 428
              +  N + + +++    +    
Sbjct: 276 LGAAFPNIQKIILVDKNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 37/215 (17%), Positives = 66/215 (30%), Gaps = 52/215 (24%)

Query: 245 LKNQSQLQYLYLSENQISREIPNWI---WRVSVVGLHCLNLSHNLLVGFQGPYSI----- 296
                 +  L LS N +       +   +  +   +  LNLS N L GF+    +     
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILA 76

Query: 297 ---PALRFIDLSSHQLRGN--------IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRL 345
                +  ++LS + L           +  +P  +  +D   N+F+S             
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK------------ 124

Query: 346 RYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-------NCLLQTLDLNG 398
                     +    A      +++ L+L  N    KS   L          + +L+L G
Sbjct: 125 --------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 399 NRLQGTVPKSIA-----NCKMLEVLNLGNNQFSDK 428
           N L       +A         +  L+L  N    K
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 48/297 (16%), Positives = 91/297 (30%), Gaps = 46/297 (15%)

Query: 68  LANISSLTYLNLS-----DAGFAGHIPLQISSMARLVALDFSFNQFS----GSISSIRWE 118
            +    +T L+LS            I    ++ A + +L+ S N         +  I   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 119 HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFEL-- 176
              N+    LS N L+      + +       +   +  LDL  N           +   
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT---ITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 177 ---KKLTSLLLSSNNLH--GTVQLDKILNLGN--LAKLDLSYNSL----AVDESSRNYSF 225
                +TSL L  N+L    + +L +IL      +  L+L  N+L      + +    S 
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 226 SPMLELLNLASCKLRE--IPNL-----KNQSQLQYLYLSENQISREIPNWIWRVSVV--G 276
              +  L+L++  L       L        + +  L L  N +       +  +      
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 277 LHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSS 333
           L  + L ++++          AL           G        +I +D +      S
Sbjct: 255 LQTVYLDYDIV-KNMSKEQCKAL-----------GAAFPNIQKIILVDKNGKEIHPS 299

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 258
           +      K++L      +++     S     + L L++  + +I +L     L+ L L  
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGR 79

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR--GNIHQL 316
           N I + I N         L  L +S+N +    G   +  LR + +S++++   G I +L
Sbjct: 80  NLIKK-IENLDAVAD--TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 317 PN--NLIYIDFSNN 328
                L  +  + N
Sbjct: 137 AALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 20/139 (14%)

Query: 87  HIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN---SLNGSIPRSMFE 143
            +   +S++     L  S N     ISS+    + NL    L  N    +          
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KISSL--SGMENLRILSLGRNLIKKIENL------- 88

Query: 144 FPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN 203
                +A +  L+ L +S N++     +   +L  L  L +S+N +    ++DK+  L  
Sbjct: 89  -----DAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 204 LAKLDLSYNSLAVDESSRN 222
           L  L L+ N L  D    N
Sbjct: 142 LEDLLLAGNPLYNDYKENN 160

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 25/198 (12%), Positives = 55/198 (27%), Gaps = 57/198 (28%)

Query: 238 KLREIPNLKNQSQLQY--LYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS 295
           ++ E       ++ +   L+     I + +   +   ++     L LS N +        
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEK-MDATLS--TLKACKHLALSTNNIEKISSLSG 68

Query: 296 IPALRFIDLSSHQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANN 353
           +  LR + L  + ++   N+  + + L  +  S N                         
Sbjct: 69  MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA---------------------- 106

Query: 354 GLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVP-KSIANC 412
                               LS    +          L+ L ++ N++        +A  
Sbjct: 107 -------------------SLSGIEKLVN--------LRVLYMSNNKITNWGEIDKLAAL 139

Query: 413 KMLEVLNLGNNQFSDKFP 430
             LE L L  N   + + 
Sbjct: 140 DKLEDLLLAGNPLYNDYK 157

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 21/128 (16%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291
           + L +  + +     N  + + L L   +I   I N     ++     ++ S N +    
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPV-IEN--LGATLDQFDAIDFSDNEIRKLD 58

Query: 292 GPYSIPALRFIDLSS---HQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYF 348
           G   +  L+ + +++    ++   + Q   +L  +  +NN+       D    +  L Y 
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118

Query: 349 CAANNGLT 356
           C   N +T
Sbjct: 119 CILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 28/155 (18%), Positives = 63/155 (40%), Gaps = 24/155 (15%)

Query: 184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP 243
           L++  +    Q  +  N     +LDL    + V E+    +     + ++ +  ++R++ 
Sbjct: 4   LTAELIE---QAAQYTNAVRDRELDLRGYKIPVIENLG--ATLDQFDAIDFSDNEIRKLD 58

Query: 244 NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALR-FI 302
                 +L+ L ++ N+I R I   + + ++  L  L L++N LV       +  L    
Sbjct: 59  GFPLLRRLKTLLVNNNRICR-IGEGLDQ-ALPDLTELILTNNSLVELG---DLDPLASLK 113

Query: 303 DLSSHQLRGN------------IHQLPNNLIYIDF 325
            L+   +  N            I+++P  +  +DF
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLDF 147

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 16/61 (26%), Positives = 22/61 (36%)

Query: 367 TTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
                +D S+N   K     L   L+TL +N NR+             L  L L NN   
Sbjct: 42  DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

Query: 427 D 427
           +
Sbjct: 102 E 102

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 16/135 (11%)

Query: 91  QISSMARLVALDFSFNQFSGSISSIRW--EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS 148
           Q ++  R   LD    +    I  I      L        SDN +     R +  FP+  
Sbjct: 14  QYTNAVRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLR 64

Query: 149 NASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLD 208
                 L TL ++ NR+          L  LT L+L++N+L     LD + +L +L  L 
Sbjct: 65  R-----LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 209 LSYNSLAVDESSRNY 223
           +  N +   +  R Y
Sbjct: 120 ILRNPVTNKKHYRLY 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 258
                + +L L        +     +    LE L+L +  L  + NL    +L+ L LSE
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 80

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALR-FIDLSSHQLRGN----- 312
           N+I     + +    +  L  LNLS N L       ++  L+    L S  L        
Sbjct: 81  NRIFG-GLDMLAE-KLPNLTHLNLSGNKLKDIS---TLEPLKKLECLKSLDLFNCEVTNL 135

Query: 313 -------IHQLPNNLIYIDFSNN 328
                     LP  L Y+D  + 
Sbjct: 136 NDYRESVFKLLP-QLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           L  L+LS NR+ G + +   +L  LT L LS N L     L+ +  L  L  LDL    +
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

Query: 215 AVDESSRNYSFS--PMLELLNLASCKLREIPN 244
                 R   F   P L  L+    + +E P+
Sbjct: 133 TNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 18/69 (26%), Positives = 26/69 (37%)

Query: 359 IPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVL 418
           I         L  L L N   +  S+      L+ L+L+ NR+ G +         L  L
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100

Query: 419 NLGNNQFSD 427
           NL  N+  D
Sbjct: 101 NLSGNKLKD 109

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 11/136 (8%)

Query: 175 ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNL 234
               +  L+L +   +            NL  L L    L       N    P L+ L L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS---NLPKLPKLKKLEL 78

Query: 235 ASCKLREIPNL--KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG 292
           +  ++    ++  +    L +L LS N++  +I        +  L  L+L +  +     
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 293 -----PYSIPALRFID 303
                   +P L ++D
Sbjct: 138 YRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 313 IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL 372
            ++ P  +  +   N                 L +    N GL  +  ++L     L  L
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKL 76

Query: 373 DLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQ--GTVPKSIANCKMLEVLNLGNNQFSDK 428
           +LS N      D     L  L  L+L+GN+L+   T+ + +   + L+ L+L N + ++ 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNL 135

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 21/165 (12%)

Query: 156 DTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           + LDL    L  ++  + F  L KLT L L  N L  T+      +L  L  L L+ N L
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQL 95

Query: 215 AVDESSRNYSFSPMLEL--LNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIW 270
           A         F  + +L  L L   +L+ +P+      ++L+ L L+ NQ+   IP   +
Sbjct: 96  ASLPLG---VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAF 151

Query: 271 RVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ---LRGN 312
              +  L  L+LS N L       S+P   F  L   Q   L GN
Sbjct: 152 D-KLTNLQTLSLSTNQL------QSVPHGAFDRLGKLQTITLFGN 189

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 259
              ++ +L L  +     +          LE L+  +  L  I NL   ++L+ L LS+N
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN 74

Query: 260 QISREIPNWIWRVSVVGLHCLNLSHNLL 287
           ++S  +           L  LNLS N +
Sbjct: 75  RVSGGLEV--LAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           L  L+LS NR+ G + V   +   LT L LS N +     ++ +  L NL  LDL    +
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

Query: 215 AVDESSRNYSFS--PMLELL 232
                 R   F   P L  L
Sbjct: 126 TNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 16/69 (23%), Positives = 25/69 (36%)

Query: 359 IPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVL 418
           +         L  L   N      ++      L+ L+L+ NR+ G +      C  L  L
Sbjct: 34  LEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93

Query: 419 NLGNNQFSD 427
           NL  N+  D
Sbjct: 94  NLSGNKIKD 102

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 11/136 (8%)

Query: 175 ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNL 234
               +  L+L ++  +             L  L      L       N      L+ L L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLEL 71

Query: 235 ASCKLREIPNL--KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG 292
           +  ++     +  +    L +L LS N+I  ++        +  L  L+L +  +     
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 293 -----PYSIPALRFID 303
                   +P L ++D
Sbjct: 131 YRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 313 IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL 372
            ++ P+++  +   N+           +    L +    N GLT I  A+L     L  L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKL 69

Query: 373 DLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQG-TVPKSIANCKMLEVLNLGNNQFSDK 428
           +LS+N      +        L  L+L+GN+++  +  + +   + L+ L+L N + ++ 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 19/117 (16%)

Query: 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDL 160
           L  + N+     S   +  L +LV   L  N L   I  + FE        +S +  L L
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFE-------GASHIQELQL 85

Query: 161 SGNRLRGSIPVSVFE-LKKLTSLLLSSNNL----HGTVQLDKILNLGNLAKLDLSYN 212
             N+++  I   +F  L +L +L L  N +     G+ +     +L +L  L+L+ N
Sbjct: 86  GENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-----HLNSLTSLNLASN 136

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 64/413 (15%), Positives = 113/413 (27%), Gaps = 48/413 (11%)

Query: 45  SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQ--ISSMARLVALD 102
           S  +L  + L R       +     +  +   L LS         L    ++   L  LD
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 103 FSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN--ASSSALDTLDL 160
              +     +  +    L +      S  SLN S   S   F            L +L L
Sbjct: 163 LRESD----VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 161 SGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKIL--NLGNLAKL-DLSYNSLAVD 217
           +       +   +    +L  L            +   L   L    +L  LS    AV 
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 218 ES-SRNYSFSPMLELLNLASCKLRE---IPNLKNQSQLQYLYLSENQISREIPNWIWRVS 273
                 YS    L  LNL+   ++    +  L    +LQ L++  + I          + 
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL-DYIEDA------GLE 331

Query: 274 VVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSS 333
           V+   C +L    +   +     P +   +     +          L  + +     T++
Sbjct: 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP----KLESVLYFCRQMTNA 387

Query: 334 IPADTGNFMPRLRYF-----------CAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK 382
                    P +  F                 L     A + +   L  L LS       
Sbjct: 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL----L 443

Query: 383 SDAFLNCL------LQTLDLNGNRLQGTVPKSIA-NCKMLEVLNLGNNQFSDK 428
           +D     +      ++ L +            +   C  L  L + +  F DK
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 44/297 (14%), Positives = 78/297 (26%), Gaps = 64/297 (21%)

Query: 151 SSSALDTLDLSGNRLRGSIPVSVFE-LKKLTSLLLSSNNL--HGTVQLDKIL--NLGNLA 205
              ALD ++L+  +L  +   ++     +   L L  N+L       L  +L  +   + 
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 206 KLDLSYNSL---AVDESSRNYSFSPMLELLNLASCKLREI------PNLKNQSQLQYLYL 256
            L LS N L    V       + +  +  L+L    L +         L    QLQ L +
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 257 SENQISREIPNWIWRVSVV--GLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH 314
           + N         + R +     L  L+L  N L           LR +  ++        
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNEL----SSEGRQVLRDLGGAAEGGA---- 270

Query: 315 QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDL 374
                                        R+         ++      L           
Sbjct: 271 -----------------------------RVVVSLTEGTAVSEYWSVILSEV-------Q 294

Query: 375 SNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANC----KMLEVLNLGNNQFSD 427
            N +   ++    +  L   DL  +R     P   A        +  L         
Sbjct: 295 RNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 59/424 (13%), Positives = 124/424 (29%), Gaps = 58/424 (13%)

Query: 26  LDLSTESISGGIENAASLFSLHYLRSLNLAR-TSFNGTQIPSKLANISSLTYLNLSDAGF 84
           +      +S    +  +      L +L L + + F    + S + +   +  L + ++ F
Sbjct: 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF 176

Query: 85  AGHIPLQISSMAR----LVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRS 140
           +      +  +A+    L  L+F   +F+     I  + L  +     S  S+       
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAK----ISPKDLETIARNCRSLVSVKVGDFEI 232

Query: 141 MFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKIL- 199
           +     F  A++  L+            +P     L     L     +  G  ++  +  
Sbjct: 233 LELVGFFKAAAN--LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290

Query: 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK----LREIPNLKNQSQLQYLY 255
               + KLDL Y  L  ++        P LE+L   +      L  +   +   QL+ L 
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL--AQYCKQLKRLR 348

Query: 256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN--- 312
           +      + + +    VS  GL    L+               L ++ +    +      
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLI--ALAQGC----------QELEYMAVYVSDITNESLE 396

Query: 313 -IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSL 371
            I     NL        +    I                 +  L   + + L     L  
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERI----------------TDLPLDNGVRSLLIGCKKLRR 440

Query: 372 LDLSNNSFMKKSDAFLNCL------LQTLDLNGNRLQGTVPKSIA-NCKMLEVLNLGNNQ 424
                      +D  L+ +      ++ + L             +  C  L+ L +    
Sbjct: 441 FAFYLRQ-GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499

Query: 425 FSDK 428
           FS++
Sbjct: 500 FSER 503

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 35/224 (15%)

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREI 265
           K +L   S+    +    +    ++ +   +  ++ +  ++    ++YL L  N++   I
Sbjct: 23  KANLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-I 78

Query: 266 PNWIWRV--SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYI 323
                     +  L  L L+ N L       S+P               +     NL  +
Sbjct: 79  S-----ALKELTNLTYLILTGNQLQ------SLPN-------------GVFDKLTNLKEL 114

Query: 324 DFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKS 383
               N    S+P    + +  L Y   A+N L  +        T L+ LDLS N      
Sbjct: 115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173

Query: 384 DAFLNCL--LQTLDLNGNRLQGTVPKSI-ANCKMLEVLNLGNNQ 424
           +   + L  L+ L L  N+L+ +VP  +      L+ + L +N 
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.28
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.98
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.71
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.2
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.17
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.55

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-48  Score=395.02  Aligned_cols=424  Identities=29%  Similarity=0.370  Sum_probs=232.7

Q ss_pred             CCCCCCCCCcceeeeeeCCCCceEEEeeccceeecc---cCC---------------------CccccccCCCCeEEecC
Q 045270            1 MQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG---IEN---------------------AASLFSLHYLRSLNLAR   56 (440)
Q Consensus         1 ~~w~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~---------------------~~~~~~l~~L~~L~l~~   56 (440)
                      ++|+.+++||.|.||+|+ .++|+.|+|+++.+.|.   +++                     ...+..+++|++|++++
T Consensus        31 ~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~  109 (768)
T 3rgz_A           31 PDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR  109 (768)
T ss_dssp             TTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCS
T ss_pred             cCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCC
Confidence            479988999999999998 68999999999988775   432                     01456666666666666


Q ss_pred             CccCCCcccc--chhcCCCCcEEEcccCccccCCcccc-cccccCceecCCCCcccCccchhh--hcccccceEEEecCC
Q 045270           57 TSFNGTQIPS--KLANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDFSFNQFSGSISSIR--WEHLLNLVYAVLSDN  131 (440)
Q Consensus        57 ~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~--~~~l~~L~~L~l~~~  131 (440)
                      |.+.+. +|.  .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+...  +..+++|++|++++|
T Consensus       110 n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          110 NSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             SEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             CcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            666543 454  56666666666666666665555544 566666677776666664443321  455556666666665


Q ss_pred             ccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCC
Q 045270          132 SLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY  211 (440)
Q Consensus       132 ~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  211 (440)
                      .+.+..+.          ..+++|++|++++|.+.+..|. +..+++|++|++++|.+.+. .+..+..+++|+.|++++
T Consensus       189 ~l~~~~~~----------~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          189 KISGDVDV----------SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISS  256 (768)
T ss_dssp             EEESCCBC----------TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCS
T ss_pred             cccccCCc----------ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCC
Confidence            55433322          2335666666666666544444 56666666666666665522 233455566666666666


Q ss_pred             Cccccc----------------------CCccccCCccccceeecCCCCCC-CCCC-CcccCcccEEeccCcccccccCc
Q 045270          212 NSLAVD----------------------ESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPN  267 (440)
Q Consensus       212 ~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~  267 (440)
                      |.+...                      .+......+++|+.|++++|.++ .+|. +..+++|+.|++++|.+.+.+|.
T Consensus       257 n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~  336 (768)
T 3rgz_A          257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM  336 (768)
T ss_dssp             SCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred             CcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence            555432                      22222222355555555555554 2333 55555566666666655544443


Q ss_pred             c-cccccccceeEEEccCcccccccC-C-ccCC-ceeEEEcCCccccCcccCC-----CCCccEEEccCCcccccCCccc
Q 045270          268 W-IWRVSVVGLHCLNLSHNLLVGFQG-P-YSIP-ALRFIDLSSHQLRGNIHQL-----PNNLIYIDFSNNNFTSSIPADT  338 (440)
Q Consensus       268 ~-~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~-~L~~L~l~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~~~  338 (440)
                      . +.  ..++|++|++++|.+....+ . ..++ +|++|++++|.+.+..+..     +++|++|++++|.+.+.+|..+
T Consensus       337 ~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  414 (768)
T 3rgz_A          337 DTLL--KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL  414 (768)
T ss_dssp             HHHT--TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred             HHHh--cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence            3 32  23346666666665542211 1 1222 4555555544443221111     2334444444444443444333


Q ss_pred             cc-----------------------cCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-Cchhh-hccccE
Q 045270          339 GN-----------------------FMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAFL-NCLLQT  393 (440)
Q Consensus       339 ~~-----------------------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~-~~~L~~  393 (440)
                      ..                       .+++|+.|++++|.+.+..|..+..+++|++|++++|.+... |..+. .++|+.
T Consensus       415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  494 (768)
T 3rgz_A          415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW  494 (768)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence            33                       144445555555544444444555555555555555555433 32222 233666


Q ss_pred             EECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270          394 LDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       394 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  440 (440)
                      |++++|++.+.+|..++.+++|+.|++++|++++.+|..++++++|+
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  541 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI  541 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence            66666666655565666666666666666666666666666555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.3e-47  Score=378.07  Aligned_cols=413  Identities=20%  Similarity=0.262  Sum_probs=330.5

Q ss_pred             CCCCCCCCcce---eeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCcc------CC-----------
Q 045270            2 QWRQSTDCCDW---SGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSF------NG-----------   61 (440)
Q Consensus         2 ~w~~~~~~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------~~-----------   61 (440)
                      +|+++.++|.|   .||+|+..++|+.|+|+++.+.|..|+  +++.+++|++|++++|.+      ..           
T Consensus        59 ~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~  136 (636)
T 4eco_A           59 NWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE  136 (636)
T ss_dssp             CCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH
T ss_pred             CCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCccccccccccCchHH
Confidence            79999999999   999998889999999999999999987  999999999999999854      00           


Q ss_pred             -----------------------------------------------------------CccccchhcCCCCcEEEcccC
Q 045270           62 -----------------------------------------------------------TQIPSKLANISSLTYLNLSDA   82 (440)
Q Consensus        62 -----------------------------------------------------------~~l~~~~~~l~~L~~L~l~~~   82 (440)
                                                                                 ..+|..++++++|++|++++|
T Consensus       137 ~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n  216 (636)
T 4eco_A          137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS  216 (636)
T ss_dssp             HHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC
T ss_pred             HHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCC
Confidence                                                                       116778888999999999999


Q ss_pred             ccccC-----------------Cccccc--ccccCceecCCCCcccCccchhhhcccccceEEEecCCc-cCC-CCCccc
Q 045270           83 GFAGH-----------------IPLQIS--SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNS-LNG-SIPRSM  141 (440)
Q Consensus        83 ~~~~~-----------------~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~  141 (440)
                      .+.+.                 +|..+.  ++++|++|++++|.+.+.++. .++.+++|++|++++|. +++ .+|..+
T Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~  295 (636)
T 4eco_A          217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDW  295 (636)
T ss_dssp             CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred             ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchHHH
Confidence            98864                 888888  999999999999988877774 68889999999999998 876 688877


Q ss_pred             cccccccccCcccccEEEcCCCccCCcccc--ccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCC
Q 045270          142 FEFPIFSNASSSALDTLDLSGNRLRGSIPV--SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDES  219 (440)
Q Consensus       142 ~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  219 (440)
                      +.+..+  ..+++|++|++++|.+. .+|.  .+..+++|++|++++|.+.+.++  .+..+++|+.|++++|.+...+ 
T Consensus       296 ~~L~~~--~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp-  369 (636)
T 4eco_A          296 QALADA--PVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIP-  369 (636)
T ss_dssp             HHHHHS--GGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECC-
T ss_pred             Hhhhcc--ccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCcccccc-
Confidence            664211  23468999999999988 7887  88899999999999998876666  6788889999999999887332 


Q ss_pred             ccccCCccc-cceeecCCCCCCCCCC-Cccc--CcccEEeccCcccccccCcccc-----cccccceeEEEccCcccccc
Q 045270          220 SRNYSFSPM-LELLNLASCKLREIPN-LKNQ--SQLQYLYLSENQISREIPNWIW-----RVSVVGLHCLNLSHNLLVGF  290 (440)
Q Consensus       220 ~~~~~~~~~-L~~L~l~~~~l~~l~~-~~~~--~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~  290 (440)
                      .. +..+++ |+.|++++|.++.+|. +...  ++|+.|++++|.+.+..|..+.     .....+|+.|++++|.++.+
T Consensus       370 ~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l  448 (636)
T 4eco_A          370 AN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF  448 (636)
T ss_dssp             TT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred             Hh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence            22 667777 9999999999988887 4443  4899999999998887776654     11334699999999998877


Q ss_pred             cCC--ccCCceeEEEcCCccccCcccCCCC----------CccEEEccCCcccccCCcccc-ccCCCcceEecccccccc
Q 045270          291 QGP--YSIPALRFIDLSSHQLRGNIHQLPN----------NLIYIDFSNNNFTSSIPADTG-NFMPRLRYFCAANNGLTG  357 (440)
Q Consensus       291 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~~----------~L~~L~L~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~  357 (440)
                      +..  ..+++|++|++++|++.......+.          +|+.|++++|.+. .+|..++ ..+++|+.|++++|.+++
T Consensus       449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~  527 (636)
T 4eco_A          449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK  527 (636)
T ss_dssp             CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence            654  3478999999999988744433332          8999999999998 7887776 348999999999999986


Q ss_pred             cchhhhhccCCCCEEEcC------CCcCCCC-Cchhh-hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccC
Q 045270          358 IIPASLCNATTLSLLDLS------NNSFMKK-SDAFL-NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKF  429 (440)
Q Consensus       358 ~~~~~~~~~~~L~~L~l~------~n~i~~~-~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  429 (440)
                       .|..+..+++|++|+++      +|.+... |..+. .++|++|++++|++. .+|..+.  ++|+.|++++|++....
T Consensus       528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence             78888889999999994      4555544 54444 456999999999994 5666554  78999999999776543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.8e-45  Score=366.13  Aligned_cols=416  Identities=19%  Similarity=0.237  Sum_probs=306.3

Q ss_pred             CCCCCC-----CC--cce------------eeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEe-cCCccCC
Q 045270            2 QWRQST-----DC--CDW------------SGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNL-ARTSFNG   61 (440)
Q Consensus         2 ~w~~~~-----~~--~~~------------~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~   61 (440)
                      +|+.+.     ++  |.|            .||.|+..++|+.|+|+++.+.|.+|+  .++.+++|++|++ ++|.+.+
T Consensus       285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG  362 (876)
T 4ecn_A          285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVS  362 (876)
T ss_dssp             GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHH
T ss_pred             CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch--HHhccccceEeeecccccccc
Confidence            577654     55  999            999999889999999999999999987  9999999999999 6663211


Q ss_pred             C---------------------------------------------------------------------------cccc
Q 045270           62 T---------------------------------------------------------------------------QIPS   66 (440)
Q Consensus        62 ~---------------------------------------------------------------------------~l~~   66 (440)
                      .                                                                           .+|.
T Consensus       363 ~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~  442 (876)
T 4ecn_A          363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK  442 (876)
T ss_dssp             TTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG
T ss_pred             cccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhH
Confidence            1                                                                           0567


Q ss_pred             chhcCCCCcEEEcccCcccc-----------------CCccccc--ccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           67 KLANISSLTYLNLSDAGFAG-----------------HIPLQIS--SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        67 ~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      .++++++|++|+|++|.+.+                 .+|..++  ++++|++|+|++|.+.+.++. .+..+++|+.|+
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~  521 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLN  521 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEE
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEE
Confidence            78888888888888888876                 2777777  888888888888887766664 578888888888


Q ss_pred             ecCCc-cCC-CCCccccccccccccCcccccEEEcCCCccCCcccc--ccccccCccEEeccccccccccchhhHhcCCC
Q 045270          128 LSDNS-LNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV--SVFELKKLTSLLLSSNNLHGTVQLDKILNLGN  203 (440)
Q Consensus       128 l~~~~-~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  203 (440)
                      +++|. +++ .+|..++.++. ....+++|++|++++|.+. .+|.  .+..+++|+.|++++|.+. .++  .+..+++
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~-~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~  596 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLAD-DEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVK  596 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHH-CTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSE
T ss_pred             CcCCCCcccccchHHHHhhhh-cccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCc
Confidence            88887 776 67776665520 1123457888888888887 7777  7888888888888888876 555  5778888


Q ss_pred             CcEEEcCCCcccccCCccccCCccc-cceeecCCCCCCCCCC-Cccc--CcccEEeccCcccccccCccc---ccccccc
Q 045270          204 LAKLDLSYNSLAVDESSRNYSFSPM-LELLNLASCKLREIPN-LKNQ--SQLQYLYLSENQISREIPNWI---WRVSVVG  276 (440)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~l~~-~~~~--~~L~~L~l~~~~~~~~~~~~~---~~~~~~~  276 (440)
                      |+.|++++|.+... +. .+..+++ |+.|++++|.++.+|. +...  ++|+.|++++|.+.+..|...   .....++
T Consensus       597 L~~L~Ls~N~l~~l-p~-~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          597 LTDLKLDYNQIEEI-PE-DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             ESEEECCSSCCSCC-CT-TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             ceEEECcCCccccc-hH-HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            88888888887732 22 2566777 8888888888887776 4444  348888888888876555322   2223446


Q ss_pred             eeEEEccCcccccccCC--ccCCceeEEEcCCccccCcccCCCC----------CccEEEccCCcccccCCcccc-ccCC
Q 045270          277 LHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQLPN----------NLIYIDFSNNNFTSSIPADTG-NFMP  343 (440)
Q Consensus       277 L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~----------~L~~L~L~~~~~~~~~~~~~~-~~~~  343 (440)
                      |+.|++++|.+..++..  ..+++|+.|++++|++.......+.          +|+.|+|++|.+. .+|..++ ..++
T Consensus       675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~  753 (876)
T 4ecn_A          675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP  753 (876)
T ss_dssp             EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred             cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence            88888888888866554  2478888888888877743332221          7888888888887 7777765 2388


Q ss_pred             CcceEecccccccccchhhhhccCCCCEEEcCC------CcCCCC-Cchhh-hccccEEECCCCcccCCchhhhhcCCCC
Q 045270          344 RLRYFCAANNGLTGIIPASLCNATTLSLLDLSN------NSFMKK-SDAFL-NCLLQTLDLNGNRLQGTVPKSIANCKML  415 (440)
Q Consensus       344 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~------n~i~~~-~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L  415 (440)
                      +|+.|++++|.+++ +|..+..+++|+.|++++      |.+... |..+. .++|+.|++++|++ +.+|..+.  ++|
T Consensus       754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L  829 (876)
T 4ecn_A          754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL  829 (876)
T ss_dssp             TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSS
T ss_pred             CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCC
Confidence            88888888888886 577788888888888866      555443 44443 45588888888888 46665543  688


Q ss_pred             cEEECCCCcccccCccc
Q 045270          416 EVLNLGNNQFSDKFPCW  432 (440)
Q Consensus       416 ~~L~l~~n~~~~~~~~~  432 (440)
                      +.|++++|++....+..
T Consensus       830 ~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          830 YILDIADNPNISIDVTS  846 (876)
T ss_dssp             CEEECCSCTTCEEECGG
T ss_pred             CEEECCCCCCCccChHH
Confidence            88888888876655443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.7e-44  Score=363.06  Aligned_cols=340  Identities=33%  Similarity=0.432  Sum_probs=211.7

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL  101 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  101 (440)
                      ++++|++++|.+++..    .+..+++|++|++++|.+... +|. ++.+++|++|++++|.+.+.+|.++.++++|++|
T Consensus       179 ~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  252 (768)
T 3rgz_A          179 ELKHLAISGNKISGDV----DVSRCVNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL  252 (768)
T ss_dssp             TCCEEECCSSEEESCC----BCTTCTTCCEEECCSSCCCSC-CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred             CCCEEECCCCcccccC----CcccCCcCCEEECcCCcCCCC-Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence            4444444444444322    235566666666666666543 444 6667777777777777666666667777777777


Q ss_pred             cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccE
Q 045270          102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS  181 (440)
Q Consensus       102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  181 (440)
                      ++++|.+.+.++..   .+++|++|++++|.+.+.+|..++..       +++|++|++++|.+.+..|..+..+++|++
T Consensus       253 ~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~-------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  322 (768)
T 3rgz_A          253 NISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGA-------CDTLTGLDLSGNHFYGAVPPFFGSCSLLES  322 (768)
T ss_dssp             ECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTT-------CTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred             ECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhh-------cCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence            77777666554432   56677777777777666666665432       367888888888777777777777888888


Q ss_pred             EeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccc------------------------cCC--ccccceeecC
Q 045270          182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN------------------------YSF--SPMLELLNLA  235 (440)
Q Consensus       182 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------~~~--~~~L~~L~l~  235 (440)
                      |++++|.+.+.++...+..+++|+.|++++|.+....+...                        +..  +++|+.|+++
T Consensus       323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~  402 (768)
T 3rgz_A          323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ  402 (768)
T ss_dssp             EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred             EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence            88888877666666667777777777777776653322211                        111  3456666666


Q ss_pred             CCCCC-CCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccC
Q 045270          236 SCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRG  311 (440)
Q Consensus       236 ~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~  311 (440)
                      +|.++ .+|. +..+++|+.|++++|.+.+..|..+...  ++|+.|++++|.+....+.  ..+++|++|++++|++.+
T Consensus       403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  480 (768)
T 3rgz_A          403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG  480 (768)
T ss_dssp             SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC--CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence            66554 3343 6666777777777777766666655433  3466677766666543322  346666666666666664


Q ss_pred             cccCC---CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCC
Q 045270          312 NIHQL---PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFM  380 (440)
Q Consensus       312 ~~~~~---~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~  380 (440)
                      ..+..   +++|++|++++|.+.+.+|.++.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             cCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            43322   456666666666666666665554 666666666666666666666666666666666666544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.5e-42  Score=343.73  Aligned_cols=403  Identities=18%  Similarity=0.138  Sum_probs=277.7

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .++++|++++|.+++..+.  .|..+++|++|++++|.+... .|.+|+++++|++|++++|.+.+..|.++.++++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             CcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            5899999999999987776  899999999999999998765 6888999999999999999999888999999999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      |++++|.+.+ +....+..+++|++|++++|.+.+..+..+..+        ++|++|++++|.+.+..+..+..+++|+
T Consensus       110 L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          110 LFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT--------EKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             EECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC--------TTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             eeccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCC--------cccCEEEcccCcccccChhhhhhhcccc
Confidence            9999999984 434468999999999999999985332333323        5777777777776654455566666666


Q ss_pred             --EEecccccccc-------------------------------------------------------------------
Q 045270          181 --SLLLSSNNLHG-------------------------------------------------------------------  191 (440)
Q Consensus       181 --~L~l~~~~~~~-------------------------------------------------------------------  191 (440)
                        .|++++|.+.+                                                                   
T Consensus       181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~  260 (606)
T 3t6q_A          181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN  260 (606)
T ss_dssp             SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred             eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence              55665555432                                                                   


Q ss_pred             -------ccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccc
Q 045270          192 -------TVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQIS  262 (440)
Q Consensus       192 -------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~  262 (440)
                             .++...+..+++|+.|++++|.++..+.  .+..+++|++|++++|.++.++.  +..+++|+.|++++|.+.
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  338 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR  338 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS--SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccCCCCh--hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence                   1222234455555555555555543221  14445556666666655554422  555555555555555554


Q ss_pred             cccCcc-cccccccceeEEEccCccccccc----CCccCCceeEEEcCCccccCcccC---CCCCccEEEccCCcccccC
Q 045270          263 REIPNW-IWRVSVVGLHCLNLSHNLLVGFQ----GPYSIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNNFTSSI  334 (440)
Q Consensus       263 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~  334 (440)
                      +..+.. +.  ..++|++|++++|.+....    ....+++|++|++++|.+.+..+.   .+++|++|++++|.+.+..
T Consensus       339 ~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  416 (606)
T 3t6q_A          339 LELGTGCLE--NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD  416 (606)
T ss_dssp             CBCCSSTTT--TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred             cccchhhhh--ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence            333332 22  2344777777777665543    224567777777777766544322   2567778888777776555


Q ss_pred             CccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC--C--chh-hhccccEEECCCCcccCCchhhh
Q 045270          335 PADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK--S--DAF-LNCLLQTLDLNGNRLQGTVPKSI  409 (440)
Q Consensus       335 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~--~--~~~-~~~~L~~L~l~~n~~~~~~~~~~  409 (440)
                      +...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  +  ..+ ..++|+.|++++|.+++..|..|
T Consensus       417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  496 (606)
T 3t6q_A          417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF  496 (606)
T ss_dssp             TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred             cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence            555444477888888888877777777777788888888888877652  1  112 23558888888888777777777


Q ss_pred             hcCCCCcEEECCCCcccccCcccccCCCCC
Q 045270          410 ANCKMLEVLNLGNNQFSDKFPCWLYDAPSL  439 (440)
Q Consensus       410 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  439 (440)
                      ..+++|+.|++++|++++..|+.+.++++|
T Consensus       497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             TTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             ccccCCCEEECCCCccCcCChhHhCccccc
Confidence            778888888888888877777777776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.1e-42  Score=340.69  Aligned_cols=398  Identities=21%  Similarity=0.182  Sum_probs=246.4

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      +++++|++++|.+++..+.  .|..+++|++|++++|.+... .|.+|+++++|++|++++|.+.+..|.+|.++++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred             CCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence            5899999999999887766  899999999999999998765 5778999999999999999999777999999999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL  179 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  179 (440)
                      |++++|.+.+. +...++.+++|++|++++|.+.+ .+|..+..+        ++|++|++++|.+.+..+..+..+++|
T Consensus       109 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--------~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          109 LVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--------TNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             EECTTSCCCCS-SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--------TTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             EEccCCccccc-cccccCCCCCCCEEeCCCCcccceechHhHhhc--------CCCCEEEccCCcceecChhhhhhhhcc
Confidence            99999999844 43358999999999999999975 568877666        577778887777765445444444433


Q ss_pred             c----EEeccccccccccchhh----------------------------------------------------------
Q 045270          180 T----SLLLSSNNLHGTVQLDK----------------------------------------------------------  197 (440)
Q Consensus       180 ~----~L~l~~~~~~~~~~~~~----------------------------------------------------------  197 (440)
                      +    +|++++|.+. .++...                                                          
T Consensus       180 ~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l  258 (606)
T 3vq2_A          180 PQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL  258 (606)
T ss_dssp             TTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred             ccccceeeccCCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence            3    4555554443 222222                                                          


Q ss_pred             ----------------------HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEe
Q 045270          198 ----------------------ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLY  255 (440)
Q Consensus       198 ----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~  255 (440)
                                            +..+++|+.|+++++.+....   .+..+++|+.|++.+|.+..+|.+ .+++|+.|+
T Consensus       259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~  334 (606)
T 3vq2_A          259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLT  334 (606)
T ss_dssp             GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEE
T ss_pred             hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC-CCCccceee
Confidence                                  223344444444444443322   244455666666666666666655 666666666


Q ss_pred             ccCcccccccCcccccccccceeEEEccCccccccc--C--CccCCceeEEEcCCccccCcc--cCCCCCccEEEccCCc
Q 045270          256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ--G--PYSIPALRFIDLSSHQLRGNI--HQLPNNLIYIDFSNNN  329 (440)
Q Consensus       256 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~L~~~~  329 (440)
                      +++|...+..  .+  ...++|+.|++++|.+....  +  ...+++|++|++++|.+.+..  ...+++|+.|++++|.
T Consensus       335 l~~n~~~~~~--~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          335 LTMNKGSISF--KK--VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             EESCSSCEEC--CC--CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE
T ss_pred             ccCCcCccch--hh--ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc
Confidence            6666433222  11  23455777777777665542  1  134556666666666544322  1124455566665555


Q ss_pred             ccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCC--CCchhh-hccccEEECCCCcccCCch
Q 045270          330 FTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK--KSDAFL-NCLLQTLDLNGNRLQGTVP  406 (440)
Q Consensus       330 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~-~~~L~~L~l~~n~~~~~~~  406 (440)
                      +.+..+...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+  .+..+. .++|++|++++|++++..|
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  490 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW  490 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence            5543332222235555555555555554455555555555555555555543  122221 2335555555555554444


Q ss_pred             hhhhcCCCCcEEECCCCcccccCcccccCCCCC
Q 045270          407 KSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL  439 (440)
Q Consensus       407 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  439 (440)
                      ..+..+++|+.|++++|++++..|..++++++|
T Consensus       491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             hhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence            455555555555555555555545555544444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.9e-41  Score=334.53  Aligned_cols=408  Identities=21%  Similarity=0.174  Sum_probs=244.4

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      +++++|++++|.+++..|.  .|..+++|++|++++|.+... .|..|+++++|++|++++|.+.+..+..+.++++|++
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHED--TFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             TTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             ccceEEECCCCccceeChh--hccCccccCeeeCCCCccccc-ChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence            5788899999888876666  788888899998888888655 5777888888888888888887655677788888888


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccc--c---------------cC------------
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS--N---------------AS------------  151 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~--~---------------~~------------  151 (440)
                      |++++|.+.+.... .+..+++|++|++++|.+.+..+..+..++.+.  .               ..            
T Consensus       134 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~  212 (606)
T 3t6q_A          134 LYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT  212 (606)
T ss_dssp             EECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             EECCCCcccccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence            88888877743222 233366777777776666544343333333222  0               00            


Q ss_pred             --------------------------------------c--ccccEEEcCCCccCCccccccccccCccEEecccccccc
Q 045270          152 --------------------------------------S--SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHG  191 (440)
Q Consensus       152 --------------------------------------~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  191 (440)
                                                            +  ..|+++++++|.+....+..|..+++|++|++++|.+. 
T Consensus       213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-  291 (606)
T 3t6q_A          213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-  291 (606)
T ss_dssp             SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred             hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence                                                  0  04555666666555444444666667777777766665 


Q ss_pred             ccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC--CcccCcccEEeccCccccccc--C
Q 045270          192 TVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN--LKNQSQLQYLYLSENQISREI--P  266 (440)
Q Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~--~~~~~~L~~L~l~~~~~~~~~--~  266 (440)
                      .++. .+..+++|+.|++++|.+....+.. +..+++|+.|++++|.+. .++.  +..+++|+.|++++|.+.+..  +
T Consensus       292 ~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  369 (606)
T 3t6q_A          292 ELPS-GLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN  369 (606)
T ss_dssp             CCCS-SCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred             CCCh-hhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence            3332 3556666677777666665443332 455666666666666554 3333  556666666666666665433  3


Q ss_pred             cccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccCcc----cCCCCCccEEEccCCcccccCCccccc
Q 045270          267 NWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNI----HQLPNNLIYIDFSNNNFTSSIPADTGN  340 (440)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~~~~~  340 (440)
                      ..+.  ..++|++|++++|.+....+.  ..+++|++|++++|.+.+..    ...+++|+.|++++|.+.+..+..+..
T Consensus       370 ~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  447 (606)
T 3t6q_A          370 LQLR--NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG  447 (606)
T ss_dssp             TTTT--TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT
T ss_pred             hhcc--cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC
Confidence            3332  233466666666665554332  34566666666666655432    222456666666666665433333333


Q ss_pred             cCCCcceEeccccccccc---chhhhhccCCCCEEEcCCCcCCCCCc-hhh-hccccEEECCCCcccCCchhhhhcCCCC
Q 045270          341 FMPRLRYFCAANNGLTGI---IPASLCNATTLSLLDLSNNSFMKKSD-AFL-NCLLQTLDLNGNRLQGTVPKSIANCKML  415 (440)
Q Consensus       341 ~~~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L  415 (440)
                       +++|++|++++|.+++.   .+..+..+++|++|++++|.+++++. .+. .++|++|++++|++++..|+.+.++++|
T Consensus       448 -l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          448 -LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             -CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             -CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence             66666666666666542   12345666666666666666665532 222 2446666666666666666666666666


Q ss_pred             cEEECCCCcccccCcccccCCCCC
Q 045270          416 EVLNLGNNQFSDKFPCWLYDAPSL  439 (440)
Q Consensus       416 ~~L~l~~n~~~~~~~~~l~~~~~L  439 (440)
                       .|++++|.+++..|+.+..+++|
T Consensus       527 -~L~L~~N~l~~~~~~~~~~l~~L  549 (606)
T 3t6q_A          527 -YLNLASNHISIILPSLLPILSQQ  549 (606)
T ss_dssp             -EEECCSSCCCCCCGGGHHHHHTS
T ss_pred             -EEECcCCcccccCHhhcccCCCC
Confidence             66666666666555555444433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.5e-42  Score=334.49  Aligned_cols=401  Identities=21%  Similarity=0.208  Sum_probs=297.6

Q ss_pred             CcceeeeeeCCC------------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcE
Q 045270            9 CCDWSGVDCDEA------------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTY   76 (440)
Q Consensus         9 ~~~~~~~~~~~~------------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~   76 (440)
                      .|.|.++ |+..            +++++|++++|.+++..+.  .|..+++|++|++++|.+... .+.+|+++++|++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~   78 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEH   78 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCE
Confidence            4777776 5321            4899999999999887766  899999999999999998765 6678999999999


Q ss_pred             EEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCC-ccccccccccccCcccc
Q 045270           77 LNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIP-RSMFEFPIFSNASSSAL  155 (440)
Q Consensus        77 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~l~~~~~~~L  155 (440)
                      |++++|.+.+..|..++++++|++|++++|.+.+......++.+++|++|++++|...+.+| ..+..        +++|
T Consensus        79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--------l~~L  150 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG--------LTSL  150 (549)
T ss_dssp             EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT--------CCEE
T ss_pred             EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc--------cccc
Confidence            99999999977777799999999999999999853333368899999999999998544555 34544        4788


Q ss_pred             cEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCc--ccc----------
Q 045270          156 DTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESS--RNY----------  223 (440)
Q Consensus       156 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~----------  223 (440)
                      ++|++++|.+.+..|..+..+++|++|++.++... ..+...+..+++|+.|++++|.+......  ...          
T Consensus       151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~  229 (549)
T 2z81_A          151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA  229 (549)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred             CeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence            99999998888777777877777887777777664 44444445567777777777665542100  000          


Q ss_pred             -----------------------------------------------------------------------------CCc
Q 045270          224 -----------------------------------------------------------------------------SFS  226 (440)
Q Consensus       224 -----------------------------------------------------------------------------~~~  226 (440)
                                                                                                   ...
T Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~  309 (549)
T 2z81_A          230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL  309 (549)
T ss_dssp             EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred             ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence                                                                                         011


Q ss_pred             cccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCccc-ccccccceeEEEccCcccccccC----CccCCce
Q 045270          227 PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWI-WRVSVVGLHCLNLSHNLLVGFQG----PYSIPAL  299 (440)
Q Consensus       227 ~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L  299 (440)
                      ++|+.|++++|.++.+|.  +..+++|+.|++++|.+.+..+... .....++|+.|++++|.++.++.    ...+++|
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L  389 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL  389 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence            345666666666666665  2467788888888887765443221 11234558888888888776543    3567888


Q ss_pred             eEEEcCCccccCccc--CCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCC
Q 045270          300 RFIDLSSHQLRGNIH--QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN  377 (440)
Q Consensus       300 ~~L~l~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  377 (440)
                      ++|++++|++.....  ..+++|++|++++|.+. .++..+   +++|++|++++|.+++..    ..+++|++|++++|
T Consensus       390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N  461 (549)
T 2z81_A          390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRN  461 (549)
T ss_dssp             CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS
T ss_pred             CEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCC
Confidence            888888887764332  23567888888888876 455443   457888888888887542    46889999999999


Q ss_pred             cCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCc
Q 045270          378 SFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP  430 (440)
Q Consensus       378 ~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  430 (440)
                      +++.+|.....++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       462 ~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          462 KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            99988876667789999999999998888889999999999999999876655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.7e-40  Score=330.94  Aligned_cols=413  Identities=22%  Similarity=0.251  Sum_probs=230.9

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      +++++|++++|.+++..+.  .|..+++|++|++++|.+... .|.+++++++|++|++++|.+....+.+|.++++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence            5899999999998875554  788999999999998888765 6778888889999999888888544446888888888


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc------------------cCcccccEEEcCC
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN------------------ASSSALDTLDLSG  162 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~------------------~~~~~L~~L~l~~  162 (440)
                      |++++|.+. .++...++.+++|++|++++|.+.+..|..+..++.|+.                  ..+++|++|++++
T Consensus       102 L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          102 LHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             EECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            888888887 444445788888888888888887666666555543322                  1234566666666


Q ss_pred             CccCCcccc---------------------------------------------------cccccc--CccEEecccccc
Q 045270          163 NRLRGSIPV---------------------------------------------------SVFELK--KLTSLLLSSNNL  189 (440)
Q Consensus       163 ~~~~~~~~~---------------------------------------------------~~~~~~--~L~~L~l~~~~~  189 (440)
                      |.+.+..+.                                                   .+..++  +|++|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            555432222                                                   222222  255555555555


Q ss_pred             ccccchhhHhcCCCCcEEEcCCCcccccCCcc--------------------------------ccCCccccceeecCCC
Q 045270          190 HGTVQLDKILNLGNLAKLDLSYNSLAVDESSR--------------------------------NYSFSPMLELLNLASC  237 (440)
Q Consensus       190 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------------------~~~~~~~L~~L~l~~~  237 (440)
                      . .++...+..+++|+.|++++|.+....+..                                .+..+++|+.|++++|
T Consensus       261 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n  339 (680)
T 1ziw_A          261 N-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN  339 (680)
T ss_dssp             C-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred             C-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence            4 333344556666666666666554432221                                1233444555555555


Q ss_pred             CCCCCCC--CcccCcccEEeccCcccccc--cCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccC
Q 045270          238 KLREIPN--LKNQSQLQYLYLSENQISRE--IPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRG  311 (440)
Q Consensus       238 ~l~~l~~--~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~  311 (440)
                      .++.++.  +..+++|+.|++++|.+...  ....+.....++|+.+++++|.+....+.  ..+++|+.|++++|.+.+
T Consensus       340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  419 (680)
T 1ziw_A          340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ  419 (680)
T ss_dssp             CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred             ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence            5544433  44455555555544432110  01111111112345555555554444322  335556666666555443


Q ss_pred             cc----cCCCCCccEEEccCCcccc--------------------------cCCccccccCCCcceEecccccccccchh
Q 045270          312 NI----HQLPNNLIYIDFSNNNFTS--------------------------SIPADTGNFMPRLRYFCAANNGLTGIIPA  361 (440)
Q Consensus       312 ~~----~~~~~~L~~L~L~~~~~~~--------------------------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  361 (440)
                      ..    ...+++|++|++++|.+.+                          .+|..+.. +++|+.|++++|.+++..+.
T Consensus       420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~-l~~L~~L~Ls~N~l~~i~~~  498 (680)
T 1ziw_A          420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LRNLTILDLSNNNIANINDD  498 (680)
T ss_dssp             ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT-CTTCCEEECCSSCCCCCCTT
T ss_pred             ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc-CCCCCEEECCCCCCCcCChh
Confidence            21    1223344444444443321                          22222222 55566666666665555555


Q ss_pred             hhhccCCCCEEEcCCCcCCCCCch----------hhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcc
Q 045270          362 SLCNATTLSLLDLSNNSFMKKSDA----------FLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPC  431 (440)
Q Consensus       362 ~~~~~~~L~~L~l~~n~i~~~~~~----------~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  431 (440)
                      .+..+++|++|++++|.++.++..          ....+|+.|++++|+++...+..|.++++|+.|++++|.+++..+.
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  578 (680)
T 1ziw_A          499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS  578 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence            555556666666666555543111          1123356666666665544444556666666666666666554444


Q ss_pred             cccCCCCC
Q 045270          432 WLYDAPSL  439 (440)
Q Consensus       432 ~l~~~~~L  439 (440)
                      .+.++++|
T Consensus       579 ~~~~l~~L  586 (680)
T 1ziw_A          579 VFNNQVSL  586 (680)
T ss_dssp             TTTTCTTC
T ss_pred             HhCCCCCC
Confidence            45555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-40  Score=328.46  Aligned_cols=399  Identities=22%  Similarity=0.228  Sum_probs=288.2

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .++++|++++|.+++..+.  .|..+++|++|++++|.+... .+.+|+++++|++|++++|.+.+..|.+|.++++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            5799999999999886666  899999999999999988764 5678999999999999999998777788999999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL  179 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  179 (440)
                      |++++|.+. .++...++.+++|++|++++|.+.. .+|..+..+        ++|++|++++|.+....+..+..+++|
T Consensus       105 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--------TNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             EECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC--------TTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             ccccccccc-cCCCccccccccccEEecCCCccceecChhhhccc--------CCCCEEeCcCCccceecHHHccchhcc
Confidence            999999988 4444458999999999999999875 468887665        688889998888875556666666666


Q ss_pred             ----cEEeccccccccccchh-----------------------------------------------------------
Q 045270          180 ----TSLLLSSNNLHGTVQLD-----------------------------------------------------------  196 (440)
Q Consensus       180 ----~~L~l~~~~~~~~~~~~-----------------------------------------------------------  196 (440)
                          +.+++++|.+. .++..                                                           
T Consensus       176 ~~~~~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l  254 (570)
T 2z63_A          176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  254 (570)
T ss_dssp             TTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred             chhhhhcccCCCCce-ecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence                66777766554 22222                                                           


Q ss_pred             ----------------------hHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEE
Q 045270          197 ----------------------KILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYL  254 (440)
Q Consensus       197 ----------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L  254 (440)
                                            .+..+++|+.|+++++.+......  +..+ +|+.|++.+|.+..+|. ..+++|+.|
T Consensus       255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~--~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L  330 (570)
T 2z63_A          255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNF-GWQHLELVNCKFGQFPT-LKLKSLKRL  330 (570)
T ss_dssp             GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC--CSCC-CCSEEEEESCBCSSCCB-CBCSSCCEE
T ss_pred             cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh--hccC-CccEEeeccCcccccCc-ccccccCEE
Confidence                                  233345555555555555432211  2333 56666666666665554 456666666


Q ss_pred             eccCcccccccCcccccccccceeEEEccCccccccc----CCccCCceeEEEcCCccccCcc--cCCCCCccEEEccCC
Q 045270          255 YLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ----GPYSIPALRFIDLSSHQLRGNI--HQLPNNLIYIDFSNN  328 (440)
Q Consensus       255 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~L~~~  328 (440)
                      ++++|.+.+..+.    ...++|+.|++++|.+....    ....+++|++|++++|.+.+..  ...+++|++|++++|
T Consensus       331 ~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          331 TFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS  406 (570)
T ss_dssp             EEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred             eCcCCcccccccc----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCC
Confidence            6666665443332    34556888888888776553    1245778888888887765433  233567888888888


Q ss_pred             cccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCC--CCchhh-hccccEEECCCCcccCCc
Q 045270          329 NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK--KSDAFL-NCLLQTLDLNGNRLQGTV  405 (440)
Q Consensus       329 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~-~~~L~~L~l~~n~~~~~~  405 (440)
                      .+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+  +|..+. .++|+.|++++|++++..
T Consensus       407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  486 (570)
T 2z63_A          407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS  486 (570)
T ss_dssp             EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC
Confidence            87755554444447888888888888877777778888888888888887762  343333 455888888888888777


Q ss_pred             hhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270          406 PKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       406 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  440 (440)
                      |..+..+++|+.|++++|.+++..|..+.++++|+
T Consensus       487 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            77788888888888888888777777777777664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4e-40  Score=326.42  Aligned_cols=402  Identities=20%  Similarity=0.174  Sum_probs=288.3

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      +++++|++++|.+++..+.  .|..+++|++|++++|.+... .|..|+++++|++|++++|.+.+..+..++++++|++
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  132 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK  132 (606)
T ss_dssp             TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred             ccCcEEeCCCCcccccCHH--HhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence            6899999999999887776  899999999999999998765 6889999999999999999998777688999999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc-------------------cCcccccEEEcC
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN-------------------ASSSALDTLDLS  161 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-------------------~~~~~L~~L~l~  161 (440)
                      |++++|.+.+......++.+++|++|++++|.+++..+..+..+..+..                   ....+|++|+++
T Consensus       133 L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~  212 (606)
T 3vq2_A          133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR  212 (606)
T ss_dssp             EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred             EeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeecc
Confidence            9999999985332336899999999999999998776776665543320                   112367778887


Q ss_pred             CCccCC----------------------------------------------------------ccccccccccCccEEe
Q 045270          162 GNRLRG----------------------------------------------------------SIPVSVFELKKLTSLL  183 (440)
Q Consensus       162 ~~~~~~----------------------------------------------------------~~~~~~~~~~~L~~L~  183 (440)
                      +|.+.+                                                          ..+. +..+++|+.|+
T Consensus       213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~  291 (606)
T 3vq2_A          213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMS  291 (606)
T ss_dssp             SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEE
T ss_pred             CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEE
Confidence            775420                                                          1111 44567777777


Q ss_pred             ccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270          184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~  263 (440)
                      +.++.+. .++  .+..+++|+.|++++|.+...+  . + .+++|+.|++++|....-..+..+++|+.|++++|.+.+
T Consensus       292 l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~~lp--~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  364 (606)
T 3vq2_A          292 LAGVSIK-YLE--DVPKHFKWQSLSIIRCQLKQFP--T-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF  364 (606)
T ss_dssp             EESCCCC-CCC--CCCTTCCCSEEEEESCCCSSCC--C-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEE
T ss_pred             ecCccch-hhh--hccccccCCEEEcccccCcccc--c-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCC
Confidence            7777775 444  5677888888998888884333  2 3 677888888888743322246677788888888877765


Q ss_pred             cc--CcccccccccceeEEEccCcccccccCC-ccCCceeEEEcCCccccCccc----CCCCCccEEEccCCcccccCCc
Q 045270          264 EI--PNWIWRVSVVGLHCLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNIH----QLPNNLIYIDFSNNNFTSSIPA  336 (440)
Q Consensus       264 ~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~L~~~~~~~~~~~  336 (440)
                      ..  +..+.  ..++|++|++++|.+...+.. ..+++|++|++++|.+.+..+    ..+++|++|++++|.+.+..|.
T Consensus       365 ~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          365 SGCCSYSDL--GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             EEECCHHHH--CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             Ccchhhhhc--cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence            42  33333  334577788877777666532 457777777777777665433    2356777777777777755555


Q ss_pred             cccccCCCcceEecccccccc-cchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCC
Q 045270          337 DTGNFMPRLRYFCAANNGLTG-IIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCK  413 (440)
Q Consensus       337 ~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~  413 (440)
                      .+.. +++|++|++++|.+++ ..|..+..+++|++|++++|++++.+...+  ..+|++|++++|++++..|..+.+++
T Consensus       443 ~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          443 IFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY  521 (606)
T ss_dssp             TTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred             hhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence            4444 7777777777777765 356667777777777777777776633222  34577777777777777777777777


Q ss_pred             CCcEEECCCCcccccCcccccCCC
Q 045270          414 MLEVLNLGNNQFSDKFPCWLYDAP  437 (440)
Q Consensus       414 ~L~~L~l~~n~~~~~~~~~l~~~~  437 (440)
                      +|+.|++++|+++ .+|..+..++
T Consensus       522 ~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          522 SLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             TCCEEECTTSCCC-CEESCGGGSC
T ss_pred             cCCEEECCCCcCc-ccCHhHhhhc
Confidence            7777777777776 4555566554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.4e-40  Score=336.61  Aligned_cols=133  Identities=20%  Similarity=0.140  Sum_probs=100.0

Q ss_pred             CcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCC
Q 045270            9 CCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHI   88 (440)
Q Consensus         9 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~   88 (440)
                      .+.|..|.. -..++++|||++|.+++..+.  .|..+++|++|++++|.....-.|.+|.++++|++|++++|.+.+..
T Consensus        13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CCCSSCCCS-SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCCCCC-CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            345666666 447899999999999877666  78899999999998886544313677888888999998888888777


Q ss_pred             cccccccccCceecCCCCcccCccc-hhhhcccccceEEEecCCccCCCCC-cccccc
Q 045270           89 PLQISSMARLVALDFSFNQFSGSIS-SIRWEHLLNLVYAVLSDNSLNGSIP-RSMFEF  144 (440)
Q Consensus        89 ~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l  144 (440)
                      |.+|.++++|++|+|++|.+.+.++ ...+..+++|++|++++|.+.+..+ ..+.++
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L  147 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL  147 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred             HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence            8888888888888888888875443 3347778888888888887765433 344444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-38  Score=320.26  Aligned_cols=404  Identities=22%  Similarity=0.182  Sum_probs=227.1

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL  101 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  101 (440)
                      ++++|++++|.+++..+.  .|..+++|++|++++|.+... .+..|+++++|++|++++|.+.+..|..+.++++|++|
T Consensus        74 ~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           74 MLKVLNLQHNELSQLSDK--TFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             TCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             CcCEEECCCCccCccChh--hhccCCCCCEEECCCCccCcc-ChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            445555555544432222  355555555555555555332 33445555566666665555555555555556666666


Q ss_pred             cCCCCcccCccchhhh--cccccceEEEecCCccCCCCCcccccccccc-------------------------------
Q 045270          102 DFSFNQFSGSISSIRW--EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS-------------------------------  148 (440)
Q Consensus       102 ~L~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~-------------------------------  148 (440)
                      ++++|.+.+..+. .+  ..+++|++|++++|.+.+..|..+..++.+.                               
T Consensus       151 ~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L  229 (680)
T 1ziw_A          151 LLSNNKIQALKSE-ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL  229 (680)
T ss_dssp             ECCSSCCCCBCHH-HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred             EccCCcccccCHH-HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence            6666655533322 22  2346677777777766655554443322210                               


Q ss_pred             ------------ccCc--ccccEEEcCCCccCCccccccccccCccEEeccccccccccc--------------------
Q 045270          149 ------------NASS--SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ--------------------  194 (440)
Q Consensus       149 ------------~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------  194 (440)
                                  +..+  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+                    
T Consensus       230 ~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~  309 (680)
T 1ziw_A          230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK  309 (680)
T ss_dssp             TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred             cCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence                        0112  238888888887775556667777888888887776652211                    


Q ss_pred             ------------hhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC-------------------------
Q 045270          195 ------------LDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC-------------------------  237 (440)
Q Consensus       195 ------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------------  237 (440)
                                  ...+..+++|+.|++++|.+....... +..+++|+.|++++|                         
T Consensus       310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L  388 (680)
T 1ziw_A          310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL  388 (680)
T ss_dssp             C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT-TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred             cccccccccccChhhcccCCCCCEEECCCCccCCCChhH-hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence                        113455667777777777766544333 445555555555544                         


Q ss_pred             ---CCCCCCC--CcccCcccEEeccCcccccccCc-ccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccc
Q 045270          238 ---KLREIPN--LKNQSQLQYLYLSENQISREIPN-WIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQL  309 (440)
Q Consensus       238 ---~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~  309 (440)
                         .++.++.  +..+++|+.|++++|.+.+.++. .+.  ..++|++|++++|.+....+.  ..+++|+.|++++|.+
T Consensus       389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l  466 (680)
T 1ziw_A          389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR--GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL  466 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT--TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc--CcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence               4443322  56667777777777776654442 332  234477777777766554332  3356666666666554


Q ss_pred             cC--cc---cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccch--------hhhhccCCCCEEEcCC
Q 045270          310 RG--NI---HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP--------ASLCNATTLSLLDLSN  376 (440)
Q Consensus       310 ~~--~~---~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--------~~~~~~~~L~~L~l~~  376 (440)
                      ..  ..   ...+++|+.|++++|.+. .++...+..+++|++|++++|.+++..+        ..+..+++|++|++++
T Consensus       467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  545 (680)
T 1ziw_A          467 KNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES  545 (680)
T ss_dssp             BCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred             cccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence            31  11   222456777777777766 4444444446677777777776654321        1255666677777776


Q ss_pred             CcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccc
Q 045270          377 NSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWL  433 (440)
Q Consensus       377 n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l  433 (440)
                      |++..++...+  ..+|+.|++++|.++...+..|.++++|+.|++++|.+++..|..+
T Consensus       546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence            66666654322  3446666666666665555556666666666666666666555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-39  Score=322.78  Aligned_cols=370  Identities=22%  Similarity=0.275  Sum_probs=315.2

Q ss_pred             CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCcc------------------------------------------
Q 045270           47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGF------------------------------------------   84 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~------------------------------------------   84 (440)
                      .+++.|+++++.+.+. +|.+++.+++|++|++++|.+                                          
T Consensus        81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            5889999999999776 899999999999999998843                                          


Q ss_pred             ------------------------------------ccCCcccccccccCceecCCCCcccCc-----------------
Q 045270           85 ------------------------------------AGHIPLQISSMARLVALDFSFNQFSGS-----------------  111 (440)
Q Consensus        85 ------------------------------------~~~~~~~~~~l~~L~~L~L~~~~~~~~-----------------  111 (440)
                                                          ++ +|.+++++++|++|+|++|.+++.                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence                                                33 788899999999999999999973                 


Q ss_pred             cchhhhc--ccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCc-cCC-ccccccccc------cCccE
Q 045270          112 ISSIRWE--HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNR-LRG-SIPVSVFEL------KKLTS  181 (440)
Q Consensus       112 ~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~  181 (440)
                      ++. .++  .+++|++|++++|.+.+.+|..++.+        ++|++|++++|. +.+ .+|..++.+      ++|++
T Consensus       239 ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--------~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~  309 (636)
T 4eco_A          239 KTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--------PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI  309 (636)
T ss_dssp             TTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTC--------SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred             Cch-hhhhcccCCCCEEEecCCcCCccChHHHhcC--------CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence            444 356  99999999999999998999888766        699999999998 886 688888776      99999


Q ss_pred             Eeccccccccccch-hhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCc-ccEEeccC
Q 045270          182 LLLSSNNLHGTVQL-DKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQ-LQYLYLSE  258 (440)
Q Consensus       182 L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~-L~~L~l~~  258 (440)
                      |++++|.+. .++. ..+..+++|+.|++++|.+.+..+  .+..+++|+.|++++|.++.+|. +..+++ |+.|++++
T Consensus       310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred             EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence            999999998 6664 368999999999999999984444  47788999999999999998887 888999 99999999


Q ss_pred             cccccccCcccccccccceeEEEccCcccccccCC--c-------cCCceeEEEcCCccccCcccC---CCCCccEEEcc
Q 045270          259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--Y-------SIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFS  326 (440)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~-------~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~  326 (440)
                      |.+. .+|..+.....++|+.|++++|.+....+.  .       .+++|++|++++|.+......   .+++|++|+++
T Consensus       387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred             CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence            9998 678777665556799999999998765432  2       567999999999998854432   36799999999


Q ss_pred             CCcccccCCccccccCC-------CcceEecccccccccchhhhh--ccCCCCEEEcCCCcCCCCCchhh-hccccEEEC
Q 045270          327 NNNFTSSIPADTGNFMP-------RLRYFCAANNGLTGIIPASLC--NATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDL  396 (440)
Q Consensus       327 ~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l  396 (440)
                      +|.+. .+|...+...+       +|+.|++++|.++ .+|..+.  .+++|++|++++|+++.+|..+. ..+|+.|++
T Consensus       466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred             CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence            99998 88887765343       9999999999999 5677776  89999999999999999876655 456999999


Q ss_pred             ------CCCcccCCchhhhhcCCCCcEEECCCCcccccCccccc
Q 045270          397 ------NGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLY  434 (440)
Q Consensus       397 ------~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  434 (440)
                            ++|.+.+..|..+.++++|+.|++++|.+ +.+|..+.
T Consensus       544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence                  56788889999999999999999999999 67777655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.6e-39  Score=322.26  Aligned_cols=371  Identities=22%  Similarity=0.267  Sum_probs=311.5

Q ss_pred             CCCCeEEecCCccCCCccccchhcCCCCcEEEc-ccCccccC--------------------------------------
Q 045270           47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNL-SDAGFAGH--------------------------------------   87 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l-~~~~~~~~--------------------------------------   87 (440)
                      .+++.|+++++.+.+. +|..++++++|++|+| ++|.+.+.                                      
T Consensus       323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5799999999999877 8999999999999999 66643222                                      


Q ss_pred             --------------------------------------CcccccccccCceecCCCCcccC-----------------cc
Q 045270           88 --------------------------------------IPLQISSMARLVALDFSFNQFSG-----------------SI  112 (440)
Q Consensus        88 --------------------------------------~~~~~~~l~~L~~L~L~~~~~~~-----------------~~  112 (440)
                                                            +|..+.++++|++|+|++|.+++                 .+
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                                  78889999999999999999997                 14


Q ss_pred             chhh-hcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCc-cCC-cccccccccc-------CccEE
Q 045270          113 SSIR-WEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNR-LRG-SIPVSVFELK-------KLTSL  182 (440)
Q Consensus       113 ~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~-------~L~~L  182 (440)
                      |... +..+++|++|++++|.+.+.+|..+..+        ++|++|++++|. +.+ .+|..+..++       +|+.|
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L--------~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L  553 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--------PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF  553 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC--------SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCC--------CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence            4421 3499999999999999988999888766        699999999998 876 6787776665       99999


Q ss_pred             eccccccccccch-hhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCc-ccEEeccCc
Q 045270          183 LLSSNNLHGTVQL-DKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQ-LQYLYLSEN  259 (440)
Q Consensus       183 ~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~-L~~L~l~~~  259 (440)
                      ++++|.+. .++. ..+..+++|+.|++++|.+...+   .+..+++|+.|++++|.++.+|. +..+++ |+.|++++|
T Consensus       554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred             EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence            99999998 6664 36899999999999999998333   47889999999999999998887 888998 999999999


Q ss_pred             ccccccCcccccccccceeEEEccCcccccccCC-------ccCCceeEEEcCCccccCcccC---CCCCccEEEccCCc
Q 045270          260 QISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP-------YSIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNN  329 (440)
Q Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~  329 (440)
                      .+. .+|..+.....++|+.|++++|.+....+.       ..+++|+.|++++|.+......   .+++|+.|+|++|.
T Consensus       630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            987 678777666666799999999998765332       2356999999999998854432   36799999999999


Q ss_pred             ccccCCccccccC-------CCcceEecccccccccchhhhh--ccCCCCEEEcCCCcCCCCCchhh-hccccEEECCC-
Q 045270          330 FTSSIPADTGNFM-------PRLRYFCAANNGLTGIIPASLC--NATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNG-  398 (440)
Q Consensus       330 ~~~~~~~~~~~~~-------~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~-  398 (440)
                      +. .+|...+...       ++|+.|++++|.++ .+|..+.  .+++|+.|++++|.+..+|..+. .++|+.|++++ 
T Consensus       709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ  786 (876)
T ss_dssp             CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCC
T ss_pred             CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCC
Confidence            98 8888776533       38999999999999 5677776  89999999999999999876555 45699999976 


Q ss_pred             -----CcccCCchhhhhcCCCCcEEECCCCcccccCccccc
Q 045270          399 -----NRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLY  434 (440)
Q Consensus       399 -----n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  434 (440)
                           |.+.+.+|..+.++++|+.|++++|.+ +.+|..+.
T Consensus       787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence                 788889999999999999999999999 77887655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8.6e-39  Score=327.05  Aligned_cols=392  Identities=23%  Similarity=0.234  Sum_probs=239.3

Q ss_pred             CceEEEeeccceeeccc-CCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCccc--cccccc
Q 045270           21 GHVIGLDLSTESISGGI-ENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQ--ISSMAR   97 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~   97 (440)
                      .++++|++++|...+.+ +.  .|.++++|++|++++|.+... .|..|+++++|++|++++|.+.+..|..  +.++++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  124 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA  124 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred             ccCeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence            67788888887555444 34  678888888888888877654 5777888888888888888777655544  777888


Q ss_pred             CceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccc--ccccc----------------cCcc------
Q 045270           98 LVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF--PIFSN----------------ASSS------  153 (440)
Q Consensus        98 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~l~~----------------~~~~------  153 (440)
                      |++|++++|.+.+..+...++.+++|++|++++|.+.+..+..+..+  +.|..                ..+.      
T Consensus       125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  204 (844)
T 3j0a_A          125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM  204 (844)
T ss_dssp             CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred             CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence            88888888877755554467778888888888877765555554433  11110                0111      


Q ss_pred             cccEEEcCCCc--------------------------------------------------------------cCCcccc
Q 045270          154 ALDTLDLSGNR--------------------------------------------------------------LRGSIPV  171 (440)
Q Consensus       154 ~L~~L~l~~~~--------------------------------------------------------------~~~~~~~  171 (440)
                      .|++|++++|.                                                              +....+.
T Consensus       205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~  284 (844)
T 3j0a_A          205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR  284 (844)
T ss_dssp             CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred             ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence            15555555553                                                              3333333


Q ss_pred             ccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccC
Q 045270          172 SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQS  249 (440)
Q Consensus       172 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~  249 (440)
                      .+..+++|+.|++++|.+. ......+..+++|+.|++++|.++...+.. +..+++|+.|++++|.+..++.  +..++
T Consensus       285 ~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  362 (844)
T 3j0a_A          285 VFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLE  362 (844)
T ss_dssp             CSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCS-CSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred             hhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHH-hcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence            3444444555555544444 222333444555555555555544333322 4444555555555555544433  44455


Q ss_pred             cccEEeccCcccccccCcccccccccceeEEEccCcccc--------------------cccCC---ccCCceeEEEcCC
Q 045270          250 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLV--------------------GFQGP---YSIPALRFIDLSS  306 (440)
Q Consensus       250 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~~---~~~~~L~~L~l~~  306 (440)
                      +|+.|++++|.+.+. +.      .++|+.+.+++|.+.                    .....   ..+++|++|++++
T Consensus       363 ~L~~L~Ls~N~l~~i-~~------~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~  435 (844)
T 3j0a_A          363 KLQTLDLRDNALTTI-HF------IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ  435 (844)
T ss_dssp             CCCEEEEETCCSCCC-SS------CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred             CCCEEECCCCCCCcc-cC------CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence            555555555544321 10      112333333333222                    22111   2466777777777


Q ss_pred             ccccCcc----cCCCCCccEEEccCCcccccC----CccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCc
Q 045270          307 HQLRGNI----HQLPNNLIYIDFSNNNFTSSI----PADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS  378 (440)
Q Consensus       307 ~~~~~~~----~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  378 (440)
                      |++.+..    ...+++|+.|++++|.+....    ....+..+++|+.|++++|.+++..+..|..+++|++|++++|+
T Consensus       436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  515 (844)
T 3j0a_A          436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR  515 (844)
T ss_dssp             CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred             CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence            7665322    223567777777777765221    11233447888888899888888888888888999999999998


Q ss_pred             CCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270          379 FMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD  427 (440)
Q Consensus       379 i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  427 (440)
                      ++.++...+..+|+.|++++|++++..|..|   ++|+.|++++|++..
T Consensus       516 l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          516 LTVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC  561 (844)
T ss_dssp             CSSCCCCCCCSCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred             CCccChhhhhccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence            8888766666789999999999888777655   478888898888764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=311.97  Aligned_cols=397  Identities=21%  Similarity=0.198  Sum_probs=313.7

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      +++++|++++|.+++..+.  .|..+++|++|++++|.+... .+..|.++++|++|++++|.+.+..+..++++++|++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  128 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  128 (570)
T ss_dssp             SSCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred             CCceEEECCCCcCCccCcc--cccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccE
Confidence            6899999999999876665  799999999999999998665 5678999999999999999988555557899999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccc----c---------------cCcccccEEEcC
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS----N---------------ASSSALDTLDLS  161 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~----~---------------~~~~~L~~L~l~  161 (440)
                      |++++|.+.+......++.+++|++|++++|.+.+..+..+..+..+.    .               ....+|+.|+++
T Consensus       129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  208 (570)
T 2z63_A          129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR  208 (570)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred             EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence            999999987532233588999999999999998866666665554330    0               011135555555


Q ss_pred             CC----------------------------------------------------------ccCCccccccccccCccEEe
Q 045270          162 GN----------------------------------------------------------RLRGSIPVSVFELKKLTSLL  183 (440)
Q Consensus       162 ~~----------------------------------------------------------~~~~~~~~~~~~~~~L~~L~  183 (440)
                      +|                                                          .+.+..+..+..+++|++|+
T Consensus       209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~  288 (570)
T 2z63_A          209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS  288 (570)
T ss_dssp             SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEE
T ss_pred             cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEE
Confidence            43                                                          11122344566678999999


Q ss_pred             ccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270          184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~  263 (440)
                      ++++.+. .++. .+..+ +|+.|++++|.+...+.    ..+++|+.|++.+|.+........+++|+.|++++|.+.+
T Consensus       289 l~~~~l~-~l~~-~~~~~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~  361 (570)
T 2z63_A          289 LVSVTIE-RVKD-FSYNF-GWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF  361 (570)
T ss_dssp             EESCEEC-SCCB-CCSCC-CCSEEEEESCBCSSCCB----CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred             ecCccch-hhhh-hhccC-CccEEeeccCcccccCc----ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCc
Confidence            9999886 4443 35566 99999999999874432    4678999999999988765545789999999999999875


Q ss_pred             cc--CcccccccccceeEEEccCcccccccC-CccCCceeEEEcCCccccCcc----cCCCCCccEEEccCCcccccCCc
Q 045270          264 EI--PNWIWRVSVVGLHCLNLSHNLLVGFQG-PYSIPALRFIDLSSHQLRGNI----HQLPNNLIYIDFSNNNFTSSIPA  336 (440)
Q Consensus       264 ~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~  336 (440)
                      ..  +..+.  ..++|+.|++++|.+...++ ...+++|++|++++|.+.+..    ...+++|++|++++|.+.+..+.
T Consensus       362 ~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  439 (570)
T 2z63_A          362 KGCCSQSDF--GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG  439 (570)
T ss_dssp             EEEEEHHHH--TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             ccccccccc--ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence            43  33343  45569999999999887765 356899999999999887653    33478999999999999866665


Q ss_pred             cccccCCCcceEeccccccc-ccchhhhhccCCCCEEEcCCCcCCCC-Cchhh-hccccEEECCCCcccCCchhhhhcCC
Q 045270          337 DTGNFMPRLRYFCAANNGLT-GIIPASLCNATTLSLLDLSNNSFMKK-SDAFL-NCLLQTLDLNGNRLQGTVPKSIANCK  413 (440)
Q Consensus       337 ~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~  413 (440)
                      .+.. +++|++|++++|.+. +..|..+..+++|++|++++|+++++ +..+. .++|+.|++++|++++..+..+.+++
T Consensus       440 ~~~~-l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          440 IFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             TTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hhhc-CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence            5554 999999999999997 46788999999999999999999988 44433 46799999999999988888899999


Q ss_pred             CCcEEECCCCcccccCc
Q 045270          414 MLEVLNLGNNQFSDKFP  430 (440)
Q Consensus       414 ~L~~L~l~~n~~~~~~~  430 (440)
                      +|+.|++++|++++..|
T Consensus       519 ~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          519 SLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TCCEEECCSSCBCCCTT
T ss_pred             CCcEEEecCCcccCCCc
Confidence            99999999999987765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.6e-39  Score=312.84  Aligned_cols=382  Identities=19%  Similarity=0.185  Sum_probs=237.8

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      +++++|++++|.+++..+.  .|..+++|++|++++|.+... .|..|+++++|++|++++|.+. .+|..  .+++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~   94 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH   94 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred             ccccEEECCCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence            6788888888888765555  788888888888888888655 5778888888888888888887 56655  7888888


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccc--cEEEcCCCcc--CCcccccccc-
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSAL--DTLDLSGNRL--RGSIPVSVFE-  175 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~-  175 (440)
                      |++++|.+.+......++.+++|++|++++|.+.+   ..+..+        ++|  ++|++++|.+  .+..|..+.. 
T Consensus        95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l--------~~L~L~~L~l~~n~l~~~~~~~~~l~~l  163 (520)
T 2z7x_B           95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPI--------AHLNISKVLLVLGETYGEKEDPEGLQDF  163 (520)
T ss_dssp             EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGG--------TTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred             EeccCCccccccchhhhccCCcceEEEecCcccch---hhcccc--------ccceeeEEEeeccccccccccccccccc
Confidence            88888888753323357888888888888888764   223222        344  7777776665  3333333322 


Q ss_pred             -------------------------ccCccEEeccccc-------cccccchhhHhcCC---------------------
Q 045270          176 -------------------------LKKLTSLLLSSNN-------LHGTVQLDKILNLG---------------------  202 (440)
Q Consensus       176 -------------------------~~~L~~L~l~~~~-------~~~~~~~~~~~~~~---------------------  202 (440)
                                               +++|+.+++++|.       +.+.++  .+..++                     
T Consensus       164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~  241 (520)
T 2z7x_B          164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRIL  241 (520)
T ss_dssp             CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred             ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHH
Confidence                                     4455555555443       211111  233444                     


Q ss_pred             ------CCcEEEcCCCcccccCCcccc----CCccccceeecCCCCCCCCCC--Cccc---CcccEEeccCcccccccCc
Q 045270          203 ------NLAKLDLSYNSLAVDESSRNY----SFSPMLELLNLASCKLREIPN--LKNQ---SQLQYLYLSENQISREIPN  267 (440)
Q Consensus       203 ------~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~l~~l~~--~~~~---~~L~~L~l~~~~~~~~~~~  267 (440)
                            +|+.|++++|.+.+..+...+    ..++.|+.+++.++.+ .+|.  +..+   ++|+.|++++|.+..... 
T Consensus       242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-  319 (520)
T 2z7x_B          242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-  319 (520)
T ss_dssp             HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-
T ss_pred             HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-
Confidence                  444455554444322222211    4445555555555554 3331  1111   345566666555432210 


Q ss_pred             ccccccccceeEEEccCcccccccC--CccCCceeEEEcCCccccC--c---ccCCCCCccEEEccCCcccccCCccccc
Q 045270          268 WIWRVSVVGLHCLNLSHNLLVGFQG--PYSIPALRFIDLSSHQLRG--N---IHQLPNNLIYIDFSNNNFTSSIPADTGN  340 (440)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~--~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~  340 (440)
                       .  ...++|++|++++|.+....+  ...+++|++|++++|++.+  .   ....+++|++|++++|.+.+.+|...+.
T Consensus       320 -~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          320 -P--SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             -C--SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             -h--hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence             0  233457777777777766322  2457777777777777764  1   1334567777777777777546665555


Q ss_pred             cCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hccccEEECCCCcccCCchhhhhcCCCCcEEE
Q 045270          341 FMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLN  419 (440)
Q Consensus       341 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  419 (440)
                      .+++|++|++++|.+++..+..+.  ++|++|++++|+++.+|...+ .++|++|++++|+++...+..+..+++|+.|+
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE
Confidence            577777777777777655554443  677777777777777765443 44577777777777744444477777777777


Q ss_pred             CCCCccccc
Q 045270          420 LGNNQFSDK  428 (440)
Q Consensus       420 l~~n~~~~~  428 (440)
                      +++|+++..
T Consensus       475 l~~N~~~c~  483 (520)
T 2z7x_B          475 LHTNPWDCS  483 (520)
T ss_dssp             CCSSCBCCC
T ss_pred             CcCCCCccc
Confidence            777777643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-36  Score=290.49  Aligned_cols=349  Identities=19%  Similarity=0.247  Sum_probs=220.7

Q ss_pred             CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCC-cccccccccCceecCCCCcccCccchhhhcccccceE
Q 045270           47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHI-PLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVY  125 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~  125 (440)
                      ++|++|++++|.+... .+..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..+ ..+..+++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCE
T ss_pred             CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCE
Confidence            5677777777766544 4566677777777777777665333 4456667777777777776653322 24566666666


Q ss_pred             EEecCCccCCCCCcc--ccccccccccCcccccEEEcCCCccCCccccc-cccccCccEEeccccccccccchhhHhcCC
Q 045270          126 AVLSDNSLNGSIPRS--MFEFPIFSNASSSALDTLDLSGNRLRGSIPVS-VFELKKLTSLLLSSNNLHGTVQLDKILNLG  202 (440)
Q Consensus       126 L~l~~~~~~~~~~~~--~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  202 (440)
                      |++++|.+++..+..  +.        .+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+ .....+..+ 
T Consensus       108 L~L~~n~l~~~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l-  177 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFK--------PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNF-  177 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTT--------TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-CCTTTSGGG-
T ss_pred             EeCCCCCCCccccCccccc--------CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-cChhhhhcc-
Confidence            666666665433322  32        2245666666666655443433 4555556666655555542 222222222 


Q ss_pred             CCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC----------CcccCcccEEeccCcccccccCcccccc
Q 045270          203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN----------LKNQSQLQYLYLSENQISREIPNWIWRV  272 (440)
Q Consensus       203 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~----------~~~~~~L~~L~l~~~~~~~~~~~~~~~~  272 (440)
                                            ....++.++++++.+..++.          +..+++|+.|++++|.+.+..+..+...
T Consensus       178 ----------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          178 ----------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             ----------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             ----------------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence                                  01344444444444443332          1234556666666666555444433221


Q ss_pred             -cccceeEEEccCcccccccC----------C----ccCCceeEEEcCCccccCcccC---CCCCccEEEccCCcccccC
Q 045270          273 -SVVGLHCLNLSHNLLVGFQG----------P----YSIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNNFTSSI  334 (440)
Q Consensus       273 -~~~~L~~L~l~~~~~~~~~~----------~----~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~  334 (440)
                       ...+++.+++++|.......          .    ...++|+++++++|.+.+..+.   .+++|++|++++|.+.+..
T Consensus       236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence             12346666666553322110          0    1246888888888888765443   3578999999999988555


Q ss_pred             CccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc-hhh-hccccEEECCCCcccCCchhhhhcC
Q 045270          335 PADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD-AFL-NCLLQTLDLNGNRLQGTVPKSIANC  412 (440)
Q Consensus       335 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~-~~~L~~L~l~~n~~~~~~~~~~~~l  412 (440)
                      +..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+..++. .+. .++|++|++++|++++..+..++.+
T Consensus       316 ~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          316 DNAFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             TTTTTT-CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hhHhcC-cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            555544 8999999999999988888889999999999999999988733 333 4669999999999998777788899


Q ss_pred             CCCcEEECCCCcccccCc
Q 045270          413 KMLEVLNLGNNQFSDKFP  430 (440)
Q Consensus       413 ~~L~~L~l~~n~~~~~~~  430 (440)
                      ++|+.|++++|++++..|
T Consensus       395 ~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCBCCCTT
T ss_pred             CcccEEEccCCCcccCCC
Confidence            999999999999988776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.7e-37  Score=299.31  Aligned_cols=399  Identities=20%  Similarity=0.208  Sum_probs=261.8

Q ss_pred             eeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCccccccc
Q 045270           16 DCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSM   95 (440)
Q Consensus        16 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l   95 (440)
                      .|...+   +.|.+++.++. +|.  .+  .++|++|++++|.+... .+..|.++++|++|++++|.+.+..|.+|.++
T Consensus         3 ~C~~~~---~c~~~~~~l~~-ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   73 (549)
T 2z81_A            3 SCDASG---VCDGRSRSFTS-IPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSL   73 (549)
T ss_dssp             EECTTS---EEECTTSCCSS-CCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             cCCCCc---eEECCCCcccc-ccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhcccc
Confidence            465433   26888888874 444  33  37999999999998765 67789999999999999999998888899999


Q ss_pred             ccCceecCCCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccc-ccc
Q 045270           96 ARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIP-VSV  173 (440)
Q Consensus        96 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~-~~~  173 (440)
                      ++|++|++++|.+.+ .+...++.+++|++|++++|.+.+ ..|..+..+        ++|++|++++|...+.++ ..+
T Consensus        74 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l--------~~L~~L~L~~n~~~~~~~~~~~  144 (549)
T 2z81_A           74 GSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL--------TNLQTLRIGNVETFSEIRRIDF  144 (549)
T ss_dssp             TTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC--------TTCCEEEEEESSSCCEECTTTT
T ss_pred             ccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhcc--------CCccEEECCCCccccccCHhhh
Confidence            999999999999984 444468999999999999999975 345555444        799999999998443454 578


Q ss_pred             ccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-----Cccc
Q 045270          174 FELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-----LKNQ  248 (440)
Q Consensus       174 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-----~~~~  248 (440)
                      ..+++|++|++++|.+.+ ..+..+..+++|+.|+++++.+...... .+..+++|+.|++++|.++.++.     ...+
T Consensus       145 ~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  222 (549)
T 2z81_A          145 AGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEI-FADILSSVRYLELRDTNLARFQFSPLPVDEVS  222 (549)
T ss_dssp             TTCCEEEEEEEEETTCCE-ECTTTTTTCSEEEEEEEECSBSTTHHHH-HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCC
T ss_pred             hcccccCeeeccCCcccc-cChhhhhccccCceEecccCcccccchh-hHhhcccccEEEccCCccccccccccchhhhh
Confidence            899999999999999974 4446688899999999999987543322 24568899999999998876421     2334


Q ss_pred             CcccEEeccCcccccccCcccc----------------------------------------------------------
Q 045270          249 SQLQYLYLSENQISREIPNWIW----------------------------------------------------------  270 (440)
Q Consensus       249 ~~L~~L~l~~~~~~~~~~~~~~----------------------------------------------------------  270 (440)
                      ++|+.|++++|.+.+..+..+.                                                          
T Consensus       223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l  302 (549)
T 2z81_A          223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL  302 (549)
T ss_dssp             CCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred             hcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccc
Confidence            4455554444433211000000                                                          


Q ss_pred             ---cccccceeEEEccCcccccccCCc--cCCceeEEEcCCccccCcc------cCCCCCccEEEccCCcccccCCc--c
Q 045270          271 ---RVSVVGLHCLNLSHNLLVGFQGPY--SIPALRFIDLSSHQLRGNI------HQLPNNLIYIDFSNNNFTSSIPA--D  337 (440)
Q Consensus       271 ---~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~------~~~~~~L~~L~L~~~~~~~~~~~--~  337 (440)
                         .....+++++++++|.+..++...  .+++|++|++++|++.+..      ...+++|++|++++|.+. .++.  .
T Consensus       303 ~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~  381 (549)
T 2z81_A          303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGE  381 (549)
T ss_dssp             CHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHH
T ss_pred             hhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccchh
Confidence               000112444444444443333221  2445555555555444321      122344444444444443 1111  1


Q ss_pred             ccccCCCcceEecccccccccchhhhhccC---------------------CCCEEEcCCCcCCCCCchhhhccccEEEC
Q 045270          338 TGNFMPRLRYFCAANNGLTGIIPASLCNAT---------------------TLSLLDLSNNSFMKKSDAFLNCLLQTLDL  396 (440)
Q Consensus       338 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~---------------------~L~~L~l~~n~i~~~~~~~~~~~L~~L~l  396 (440)
                      .+..+++|++|++++|.++ ..|..+..++                     +|++|++++|++++.+.  ..++|++|++
T Consensus       382 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~--~l~~L~~L~L  458 (549)
T 2z81_A          382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSL--FLPRLQELYI  458 (549)
T ss_dssp             HGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCC--CCTTCCEEEC
T ss_pred             hhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcc--cCChhcEEEC
Confidence            1222444444444444444 2333344444                     45555555555544431  2456889999


Q ss_pred             CCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270          397 NGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       397 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  440 (440)
                      ++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+
T Consensus       459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred             CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence            999888 4454 46789999999999999998888888888774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=295.85  Aligned_cols=389  Identities=19%  Similarity=0.220  Sum_probs=275.1

Q ss_pred             EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270           24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF  103 (440)
Q Consensus        24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  103 (440)
                      +++|++++.+++ +|.  .+.  ++|++|++++|.+... .+..|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus         3 ~~l~ls~n~l~~-ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCSS-CCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCCccc-ccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence            679999999984 665  444  8999999999999765 5678999999999999999999777899999999999999


Q ss_pred             CCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccccccccccCc--c
Q 045270          104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL--T  180 (440)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~  180 (440)
                      ++|.++ .++..   .+++|++|++++|.+.+ .+|..++.+        ++|++|++++|.+..   ..+..+++|  +
T Consensus        77 s~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l--------~~L~~L~L~~n~l~~---~~~~~l~~L~L~  141 (520)
T 2z7x_B           77 SHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNM--------SQLKFLGLSTTHLEK---SSVLPIAHLNIS  141 (520)
T ss_dssp             CSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGC--------TTCCEEEEEESSCCG---GGGGGGTTSCEE
T ss_pred             CCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccC--------CcceEEEecCcccch---hhccccccceee
Confidence            999998 55553   89999999999999986 467777666        799999999999874   456777888  9


Q ss_pred             EEecccccc--ccccchhhHhc--------------------------CCCCcEEEcCCCc-------ccccCCccccCC
Q 045270          181 SLLLSSNNL--HGTVQLDKILN--------------------------LGNLAKLDLSYNS-------LAVDESSRNYSF  225 (440)
Q Consensus       181 ~L~l~~~~~--~~~~~~~~~~~--------------------------~~~L~~L~l~~~~-------~~~~~~~~~~~~  225 (440)
                      +|++++|.+  .+..+ ..+..                          +++|+.+++++|.       +....+  .+..
T Consensus       142 ~L~l~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~  218 (520)
T 2z7x_B          142 KVLLVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQT  218 (520)
T ss_dssp             EEEEEECTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGG
T ss_pred             EEEeeccccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhcc
Confidence            999999987  42222 22333                          4444444444442       110000  0111


Q ss_pred             cc---------------------------ccceeecCCCCCC-CCCC-C-----cccCcccEEeccCcccccccC-cccc
Q 045270          226 SP---------------------------MLELLNLASCKLR-EIPN-L-----KNQSQLQYLYLSENQISREIP-NWIW  270 (440)
Q Consensus       226 ~~---------------------------~L~~L~l~~~~l~-~l~~-~-----~~~~~L~~L~l~~~~~~~~~~-~~~~  270 (440)
                      ++                           +|+.|++++|.++ .+|. +     ..++.|+.+++++|.+  .+| ..+.
T Consensus       219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~  296 (520)
T 2z7x_B          219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY  296 (520)
T ss_dssp             CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH
T ss_pred             ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhh
Confidence            22                           3444444444443 3333 2     4445555555554444  222 1111


Q ss_pred             cc-cccceeEEEccCcccccccCCccCCceeEEEcCCccccCccc---CCCCCccEEEccCCcccc--cCCccccccCCC
Q 045270          271 RV-SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH---QLPNNLIYIDFSNNNFTS--SIPADTGNFMPR  344 (440)
Q Consensus       271 ~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~~  344 (440)
                      .. ...+++.|++++|.+........+++|++|++++|.+.+..+   ..+++|++|++++|.+.+  .+|..+.. +++
T Consensus       297 ~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~  375 (520)
T 2z7x_B          297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKS  375 (520)
T ss_dssp             HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTT
T ss_pred             cccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCC
Confidence            11 123477777777776665543568888999999888877443   336788999999988874  33333444 889


Q ss_pred             cceEecccccccccchh-hhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCC
Q 045270          345 LRYFCAANNGLTGIIPA-SLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNN  423 (440)
Q Consensus       345 L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  423 (440)
                      |++|++++|.+++..|. .+..+++|++|++++|+++.........+|+.|++++|+++ .+|..+..+++|+.|++++|
T Consensus       376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC
Confidence            99999999988873444 47778899999999998865433223367999999999999 66777779999999999999


Q ss_pred             cccccCcccccCCCCCC
Q 045270          424 QFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       424 ~~~~~~~~~l~~~~~L~  440 (440)
                      ++++..+..+..+++|+
T Consensus       455 ~l~~l~~~~~~~l~~L~  471 (520)
T 2z7x_B          455 QLKSVPDGIFDRLTSLQ  471 (520)
T ss_dssp             CCCCCCTTTTTTCTTCC
T ss_pred             cCCccCHHHhccCCccc
Confidence            99854334488887774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.3e-36  Score=297.01  Aligned_cols=143  Identities=21%  Similarity=0.219  Sum_probs=119.9

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      ..+++|||++|.+++..+.  +|..+++|++|++++|.+... .+.+|.++++|++|+|++|.+.+..+.+|.++++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            4799999999999976666  899999999999999998764 4667999999999999999999666677999999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCcccccccc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE  175 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~  175 (440)
                      |++++|.++ .++...++.+++|++|++++|.+.. ..|..+..+        ++|++|++++|.+.+..+..+..
T Consensus       129 L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          129 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--------TNLEHLDLSSNKIQSIYCTDLRV  195 (635)
T ss_dssp             EECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC--------TTCCEEECCSSCCCEECGGGGHH
T ss_pred             EECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccc--------hhhhhhcccCccccccccccccc
Confidence            999999998 5555578999999999999999874 345666544        68999999999887554544443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1e-35  Score=284.45  Aligned_cols=377  Identities=20%  Similarity=0.198  Sum_probs=273.0

Q ss_pred             CCCCcceee--eeeCCC---------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCC
Q 045270            6 STDCCDWSG--VDCDEA---------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSL   74 (440)
Q Consensus         6 ~~~~~~~~~--~~~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L   74 (440)
                      +...|.|.+  +.|...         +++++|++++|.+++..+.  .|..+++|++|++++|.+...-.+..|.++++|
T Consensus         4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L   81 (455)
T 3v47_A            4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL   81 (455)
T ss_dssp             ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred             ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccC
Confidence            345677654  667532         5799999999999887776  899999999999999988644246779999999


Q ss_pred             cEEEcccCccccCCcccccccccCceecCCCCcccCcc-chhhhcccccceEEEecCCccCCCCCcc-ccccccccccCc
Q 045270           75 TYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSI-SSIRWEHLLNLVYAVLSDNSLNGSIPRS-MFEFPIFSNASS  152 (440)
Q Consensus        75 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~l~~~~~  152 (440)
                      ++|++++|.+.+..|..+.++++|++|++++|.+.+.. ....+..+++|++|++++|.+.+..|.. +..        +
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--------l  153 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN--------M  153 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG--------C
T ss_pred             CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC--------C
Confidence            99999999999788999999999999999999998543 3345889999999999999998776766 443        4


Q ss_pred             ccccEEEcCCCccCCccccccccc--cCccEEeccccccccccchhh--------HhcCCCCcEEEcCCCcccccCCccc
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFEL--KKLTSLLLSSNNLHGTVQLDK--------ILNLGNLAKLDLSYNSLAVDESSRN  222 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~  222 (440)
                      ++|++|++++|.+.+..+..+..+  .+++.|+++++.+. ..+...        +..+++|+.|++++|.+....+...
T Consensus       154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  232 (455)
T 3v47_A          154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF  232 (455)
T ss_dssp             TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred             CcccEEeCCCCcccccChhhhhccccccccccccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhh
Confidence            799999999999987777777765  78999999999886 322211        2245678888888887765433321


Q ss_pred             c--CCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC--ccCCc
Q 045270          223 Y--SFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPA  298 (440)
Q Consensus       223 ~--~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~  298 (440)
                      .  ...++|+.|+++++.......            ..+.+....+..+.....++++.+++++|.+....+.  ..+++
T Consensus       233 ~~~~~~~~L~~L~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  300 (455)
T 3v47_A          233 FDAIAGTKIQSLILSNSYNMGSSF------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD  300 (455)
T ss_dssp             HHHTTTCCEEEEECTTCTTTSCCT------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hccccccceeeEeecccccccccc------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCC
Confidence            1  123667788877775432110            0001111111112222233466666666665554332  34667


Q ss_pred             eeEEEcCCccccCcccC---CCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcC
Q 045270          299 LRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLS  375 (440)
Q Consensus       299 L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  375 (440)
                      |++|++++|++.+..+.   .+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus       301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  379 (455)
T 3v47_A          301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD  379 (455)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH-hcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence            77777777776654332   3578889999998887433444 4448999999999999988888899999999999999


Q ss_pred             CCcCCCCCchhh--hccccEEECCCCcccCCch
Q 045270          376 NNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVP  406 (440)
Q Consensus       376 ~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~  406 (440)
                      +|++++++...+  .++|+.|++++|++.+..|
T Consensus       380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999998866543  4569999999999997765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.4e-35  Score=278.36  Aligned_cols=344  Identities=22%  Similarity=0.306  Sum_probs=190.9

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .++++|+++++.++. .+   .+..+++|++|++++|.+...  +. +..+++|++|++++|.+.+. +. +.++++|++
T Consensus        46 ~~l~~L~l~~~~i~~-l~---~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~  116 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID---GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTG  116 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred             ccccEEecCCCCCcc-Cc---chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccC-hh-hcCCCCCCE
Confidence            356666666665543 22   356666666666666665442  32 66666666666666666533 22 666666666


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      |++++|.+.+. +.  +..+++|++|++++|.+. .++ .+        ..+++|++|++. +.+.. .+ .+..+++|+
T Consensus       117 L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~-~~~-~~--------~~l~~L~~L~l~-~~~~~-~~-~~~~l~~L~  180 (466)
T 1o6v_A          117 LTLFNNQITDI-DP--LKNLTNLNRLELSSNTIS-DIS-AL--------SGLTSLQQLSFG-NQVTD-LK-PLANLTTLE  180 (466)
T ss_dssp             EECCSSCCCCC-GG--GTTCTTCSEEEEEEEEEC-CCG-GG--------TTCTTCSEEEEE-ESCCC-CG-GGTTCTTCC
T ss_pred             EECCCCCCCCC-hH--HcCCCCCCEEECCCCccC-CCh-hh--------ccCCcccEeecC-CcccC-ch-hhccCCCCC
Confidence            66666666532 22  566666666666666655 222 12        233566666664 22321 11 255666666


Q ss_pred             EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcc
Q 045270          181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ  260 (440)
Q Consensus       181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~  260 (440)
                      +|++++|.+. ..+  .+..+++|+.|++++|.+....+   +..+++|+.|++++|.++.++.+..+++|+.|++++|.
T Consensus       181 ~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          181 RLDISSNKVS-DIS--VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ  254 (466)
T ss_dssp             EEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             EEECcCCcCC-CCh--hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc
Confidence            6666666654 222  25566666666666666544332   34455666666666666655555566666666666665


Q ss_pred             cccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccc
Q 045270          261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGN  340 (440)
Q Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~  340 (440)
                      +.+..+  +  ...++|+.|++++|.+...++...                     +++|+.|++++|.+.+ ++. +. 
T Consensus       255 l~~~~~--~--~~l~~L~~L~l~~n~l~~~~~~~~---------------------l~~L~~L~L~~n~l~~-~~~-~~-  306 (466)
T 1o6v_A          255 ISNLAP--L--SGLTKLTELKLGANQISNISPLAG---------------------LTALTNLELNENQLED-ISP-IS-  306 (466)
T ss_dssp             CCCCGG--G--TTCTTCSEEECCSSCCCCCGGGTT---------------------CTTCSEEECCSSCCSC-CGG-GG-
T ss_pred             cccchh--h--hcCCCCCEEECCCCccCccccccC---------------------CCccCeEEcCCCcccC-chh-hc-
Confidence            543322  2  122335555555555444433333                     3455555555555552 222 22 


Q ss_pred             cCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEEC
Q 045270          341 FMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNL  420 (440)
Q Consensus       341 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  420 (440)
                      .+++|+.|++++|.+++..+  +..+++|++|++++|++.+.+.....++|+.|++++|++.+..|  +..+++|+.|++
T Consensus       307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  382 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred             CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence            26666666666666665443  55666666666666666665433334456666666666665554  566666666666


Q ss_pred             CCCcccc
Q 045270          421 GNNQFSD  427 (440)
Q Consensus       421 ~~n~~~~  427 (440)
                      ++|++++
T Consensus       383 ~~n~~~~  389 (466)
T 1o6v_A          383 NDQAWTN  389 (466)
T ss_dssp             CCEEEEC
T ss_pred             cCCcccC
Confidence            6666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.8e-36  Score=286.03  Aligned_cols=365  Identities=23%  Similarity=0.311  Sum_probs=195.7

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCC-------------CcEEEcccCccccC
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISS-------------LTYLNLSDAGFAGH   87 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~-------------L~~L~l~~~~~~~~   87 (440)
                      +++++|++++|.+ +.+|.  +++++++|++|++++|.+.+. +|..++.+++             +++|+++++.+. .
T Consensus        11 ~~L~~L~l~~n~l-~~iP~--~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~   85 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPV--EAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S   85 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred             ccchhhhcccCch-hhCCh--hHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence            5677777777777 56666  677777777777777766544 5666655544             366666666655 2


Q ss_pred             CcccccccccCceecCCCCcccCccchhh---------------hcc-cccceEEEecCCccCCCCCccccccccccccC
Q 045270           88 IPLQISSMARLVALDFSFNQFSGSISSIR---------------WEH-LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS  151 (440)
Q Consensus        88 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~---------------~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~  151 (440)
                      +|..   .++|++|++++|.+++ ++...               +.. .++|++|++++|.+. .+| .+.        .
T Consensus        86 lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp-~~~--------~  151 (454)
T 1jl5_A           86 LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP-ELQ--------N  151 (454)
T ss_dssp             CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCC-CCT--------T
T ss_pred             CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCc-ccC--------C
Confidence            3321   2455555555555553 22100               000 135555555555554 244 232        2


Q ss_pred             cccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccce
Q 045270          152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL  231 (440)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  231 (440)
                      +++|++|++++|.+. .+|..   ..+|++|++++|.+.+ ++  .+..+++|+.|++++|.++....     ..++|+.
T Consensus       152 l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~  219 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPD-----LPLSLES  219 (454)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCC-----CCTTCCE
T ss_pred             CCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCC-----CcCcccE
Confidence            345666666666555 23332   2356666666666552 33  35666666666666666653221     1246777


Q ss_pred             eecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC
Q 045270          232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG  311 (440)
Q Consensus       232 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  311 (440)
                      |++++|.++.+|.+..+++|+.|++++|.+.+ +|..+     ++|+.|++++|.+..++..  +++|++|++++|.+.+
T Consensus       220 L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~~-----~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          220 IVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLP-----PSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             EECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCC-----TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE
T ss_pred             EECcCCcCCcccccCCCCCCCEEECCCCcCCc-ccccc-----cccCEEECCCCcccccCcc--cCcCCEEECcCCccCc
Confidence            77777777666666677777777777776653 33221     3477777777777665432  4677777777777665


Q ss_pred             cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccc
Q 045270          312 NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLL  391 (440)
Q Consensus       312 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L  391 (440)
                      . +..+++|+.|++++|.+.+ ++    ...++|+.|++++|.+++ .|..   +++|++|++++|.++.+|.  ...+|
T Consensus       292 l-~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~--~l~~L  359 (454)
T 1jl5_A          292 L-SELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE--LPQNL  359 (454)
T ss_dssp             E-SCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC--CCTTC
T ss_pred             c-cCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc--hhhhc
Confidence            2 2334677888888777763 22    213589999999999885 4433   5889999999999998877  56779


Q ss_pred             cEEECCCCcccC--CchhhhhcC-------------CCCcEEECCCCcccc--cCcccccCC
Q 045270          392 QTLDLNGNRLQG--TVPKSIANC-------------KMLEVLNLGNNQFSD--KFPCWLYDA  436 (440)
Q Consensus       392 ~~L~l~~n~~~~--~~~~~~~~l-------------~~L~~L~l~~n~~~~--~~~~~l~~~  436 (440)
                      ++|++++|++.+  .+|..+.++             ++|+.|++++|++++  .+|.++..+
T Consensus       360 ~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred             cEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence            999999999998  677788777             889999999999987  788877654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.4e-36  Score=293.57  Aligned_cols=377  Identities=19%  Similarity=0.209  Sum_probs=204.8

Q ss_pred             EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270           24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF  103 (440)
Q Consensus        24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  103 (440)
                      ++++++++.+++ +|.  .+.  ++|++|++++|.+... .+..|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus        34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            667777776664 443  222  6777777777776554 4456677777777777777776555666777777777777


Q ss_pred             CCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccccccccccCc--c
Q 045270          104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL--T  180 (440)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~  180 (440)
                      ++|.++ .++..   .+++|++|++++|.+.+ ..|..+..+        ++|++|++++|.+..   ..+..+++|  +
T Consensus       108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l--------~~L~~L~L~~n~l~~---~~~~~l~~L~L~  172 (562)
T 3a79_B          108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNL--------TKLTFLGLSAAKFRQ---LDLLPVAHLHLS  172 (562)
T ss_dssp             TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGC--------TTCCEEEEECSBCCT---TTTGGGTTSCEE
T ss_pred             CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhccc--------CcccEEecCCCcccc---Cchhhhhhceee
Confidence            777766 44432   56777777777777663 223455444        566777777766653   223344444  6


Q ss_pred             EEecccccc--cc-------------------------ccchhhHhcCCCCcEEEcCCCcccccCC---ccccC------
Q 045270          181 SLLLSSNNL--HG-------------------------TVQLDKILNLGNLAKLDLSYNSLAVDES---SRNYS------  224 (440)
Q Consensus       181 ~L~l~~~~~--~~-------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~------  224 (440)
                      +|++++|.+  .+                         ......+..+++|+.+++++|.......   ...+.      
T Consensus       173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~  252 (562)
T 3a79_B          173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL  252 (562)
T ss_dssp             EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred             EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence            666666655  31                         1222223344555666665552100000   00000      


Q ss_pred             ---------------------CccccceeecCCCCCC-CCCC-C-----cccCc--------------------------
Q 045270          225 ---------------------FSPMLELLNLASCKLR-EIPN-L-----KNQSQ--------------------------  250 (440)
Q Consensus       225 ---------------------~~~~L~~L~l~~~~l~-~l~~-~-----~~~~~--------------------------  250 (440)
                                           ..++|++|++++|.++ .+|. +     ..++.                          
T Consensus       253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~  332 (562)
T 3a79_B          253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN  332 (562)
T ss_dssp             EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred             EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence                                 1125666666666554 4443 2     22222                          


Q ss_pred             ccEEeccCcccccccCcccccccccceeEEEccCcccccccC--CccCCceeEEEcCCccccCcc-----cCCCCCccEE
Q 045270          251 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG--PYSIPALRFIDLSSHQLRGNI-----HQLPNNLIYI  323 (440)
Q Consensus       251 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-----~~~~~~L~~L  323 (440)
                      |+.|++++|.+....   + ....++|++|++++|.+++..+  ...+++|++|++++|++.+..     ...+++|++|
T Consensus       333 L~~L~l~~n~~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          333 IKMLSISDTPFIHMV---C-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             CSEEEEESSCCCCCC---C-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             ceEEEccCCCccccc---C-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence            233333333221100   0 0123446666666666655322  244666666666666665421     2334566666


Q ss_pred             EccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hccccEEECCCCccc
Q 045270          324 DFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNGNRLQ  402 (440)
Q Consensus       324 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~n~~~  402 (440)
                      ++++|.+.+.+|...+..+++|+.|++++|.+++..+..+.  ++|++|++++|+++.+|...+ .++|++|++++|+++
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred             ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence            66666666445655554466666666666666544443332  566667776666666654333 344667777776666


Q ss_pred             CCchhhhhcCCCCcEEECCCCcccc
Q 045270          403 GTVPKSIANCKMLEVLNLGNNQFSD  427 (440)
Q Consensus       403 ~~~~~~~~~l~~L~~L~l~~n~~~~  427 (440)
                      ...+..+..+++|+.|++++|++..
T Consensus       487 ~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          487 SVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             CCCHHHHhcCCCCCEEEecCCCcCC
Confidence            4333336666667777777666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.5e-35  Score=288.84  Aligned_cols=365  Identities=20%  Similarity=0.215  Sum_probs=273.3

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      +++++|++++|.+++..+.  .|..+++|++|++++|.+... .|.+|.++++|++|++++|.+. .+|..  .+++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~  125 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH  125 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred             CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence            6899999999999876655  899999999999999998765 6788999999999999999998 66765  8999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCcc--CCccccccc----
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL--RGSIPVSVF----  174 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~--~~~~~~~~~----  174 (440)
                      |++++|.+.+......++.+++|++|++++|.+...   .+..++     .+ +|++|++++|.+  .+..+..+.    
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~-----~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~  196 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA-----HL-HLSCILLDLVSYHIKGGETESLQIPNT  196 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT-----TS-CEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh-----hc-eeeEEEeecccccccccCcccccccCc
Confidence            999999998533335789999999999999998742   233331     11 338888887776  433333333    


Q ss_pred             ----------------------cccCccEEeccccc----------------------------cccccc--hhhHhcCC
Q 045270          175 ----------------------ELKKLTSLLLSSNN----------------------------LHGTVQ--LDKILNLG  202 (440)
Q Consensus       175 ----------------------~~~~L~~L~l~~~~----------------------------~~~~~~--~~~~~~~~  202 (440)
                                            .+++|+.+++++|.                            +.+...  .......+
T Consensus       197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~  276 (562)
T 3a79_B          197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR  276 (562)
T ss_dssp             EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred             ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc
Confidence                                  24456666665542                            110000  00111234


Q ss_pred             CCcEEEcCCCcccccCCcccc----CCc--------------------------cccceeecCCCCCCCCCCCcccCccc
Q 045270          203 NLAKLDLSYNSLAVDESSRNY----SFS--------------------------PMLELLNLASCKLREIPNLKNQSQLQ  252 (440)
Q Consensus       203 ~L~~L~l~~~~~~~~~~~~~~----~~~--------------------------~~L~~L~l~~~~l~~l~~~~~~~~L~  252 (440)
                      +|+.|++++|.+.+..+...+    ..+                          .+|+.|++++|.+..++....+++|+
T Consensus       277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~  356 (562)
T 3a79_B          277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT  356 (562)
T ss_dssp             SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred             cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence            788888888877643332211    111                          34788888888776665447889999


Q ss_pred             EEeccCcccccccCcccccccccceeEEEccCcccccccC----CccCCceeEEEcCCccccCcc----cCCCCCccEEE
Q 045270          253 YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG----PYSIPALRFIDLSSHQLRGNI----HQLPNNLIYID  324 (440)
Q Consensus       253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~  324 (440)
                      .|++++|.+.+..+..+..  .++|+.|++++|.++.++.    ...+++|++|++++|.+.+..    ...+++|++|+
T Consensus       357 ~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~  434 (562)
T 3a79_B          357 FLNFTQNVFTDSVFQGCST--LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN  434 (562)
T ss_dssp             EEECCSSCCCTTTTTTCCS--CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred             EEECCCCccccchhhhhcc--cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence            9999999998877777754  4569999999999987653    467899999999999988633    23368999999


Q ss_pred             ccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCch-hh-hccccEEECCCCccc
Q 045270          325 FSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDA-FL-NCLLQTLDLNGNRLQ  402 (440)
Q Consensus       325 L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~-~~~L~~L~l~~n~~~  402 (440)
                      +++|.+++.++..+   .++|+.|++++|.++ .+|..+..+++|++|++++|+++.++.. +. .++|+.|++++|++.
T Consensus       435 l~~n~l~~~~~~~l---~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          435 LSSNMLTGSVFRCL---PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CCSSCCCGGGGSSC---CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             CCCCCCCcchhhhh---cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            99999986555443   269999999999999 5666666999999999999999998775 22 456999999999999


Q ss_pred             CCch
Q 045270          403 GTVP  406 (440)
Q Consensus       403 ~~~~  406 (440)
                      +.-+
T Consensus       511 c~c~  514 (562)
T 3a79_B          511 CTCP  514 (562)
T ss_dssp             CCHH
T ss_pred             CCcc
Confidence            7544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5e-33  Score=266.07  Aligned_cols=335  Identities=24%  Similarity=0.291  Sum_probs=220.0

Q ss_pred             cccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccc
Q 045270           44 FSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL  123 (440)
Q Consensus        44 ~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L  123 (440)
                      ..+++++.|+++++.+..  ++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+.+..+   +..+++|
T Consensus        43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L  114 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP---LANLTNL  114 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred             hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh---hcCCCCC
Confidence            346677777777766643  33 36667777777777777663 333 6777777777777777663322   6666777


Q ss_pred             eEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCC
Q 045270          124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN  203 (440)
Q Consensus       124 ~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  203 (440)
                      ++|++++|.+.+ ++. +        ..+++|++|++++|.+.. .+ .+..+++|++|.+.+ .+. ...  .+..+++
T Consensus       115 ~~L~L~~n~l~~-~~~-~--------~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~-~~~--~~~~l~~  178 (466)
T 1o6v_A          115 TGLTLFNNQITD-IDP-L--------KNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVT-DLK--PLANLTT  178 (466)
T ss_dssp             CEEECCSSCCCC-CGG-G--------TTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCC-CCG--GGTTCTT
T ss_pred             CEEECCCCCCCC-ChH-H--------cCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-ccc-Cch--hhccCCC
Confidence            777777776653 222 2        233566667776666652 33 355666666666642 222 111  2555666


Q ss_pred             CcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEcc
Q 045270          204 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS  283 (440)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  283 (440)
                      |+.|++++|.+....   .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+                      
T Consensus       179 L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l----------------------  233 (466)
T 1o6v_A          179 LERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL----------------------  233 (466)
T ss_dssp             CCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC----------------------
T ss_pred             CCEEECcCCcCCCCh---hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCc----------------------
Confidence            666666666554332   1344555555555555555544444555555555555544                      


Q ss_pred             CcccccccCCccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhh
Q 045270          284 HNLLVGFQGPYSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS  362 (440)
Q Consensus       284 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  362 (440)
                          ..+.....+++|++|++++|.+.+.. ...+++|++|++++|.+.+ ++. +. .+++|+.|++++|.+++..+  
T Consensus       234 ----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--  304 (466)
T 1o6v_A          234 ----KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-ISP-LA-GLTALTNLELNENQLEDISP--  304 (466)
T ss_dssp             ----CCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCCGG--
T ss_pred             ----ccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc-ccc-cc-CCCccCeEEcCCCcccCchh--
Confidence                33333334555666666665554433 2335678888888888873 443 33 48999999999999987554  


Q ss_pred             hhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270          363 LCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       363 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  440 (440)
                      +..+++|++|++++|.+.+.+.....++|++|++++|++.+.  ..+.++++|+.|++++|++++..|  +..+++|+
T Consensus       305 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  378 (466)
T 1o6v_A          305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT  378 (466)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred             hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence            889999999999999999986655567799999999999976  468999999999999999998877  77777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.7e-34  Score=270.77  Aligned_cols=343  Identities=23%  Similarity=0.315  Sum_probs=205.6

Q ss_pred             cccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccC-------------ceecCCCCcccC
Q 045270           44 FSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARL-------------VALDFSFNQFSG  110 (440)
Q Consensus        44 ~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~~~~  110 (440)
                      .+.++|++|+++++.+ +. +|+.++++++|++|++++|.+.+.+|..++++.+|             ++|++++|.+++
T Consensus         8 ~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             cccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            3568999999999999 33 89999999999999999999998999999988765             999999999885


Q ss_pred             ccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccc
Q 045270          111 SISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLH  190 (440)
Q Consensus       111 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  190 (440)
                       ++.    ..++|++|++++|.+++ +|..+           ++|++|++++|.+.+ ++..   .++|++|++++|.+.
T Consensus        86 -lp~----~~~~L~~L~l~~n~l~~-lp~~~-----------~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           86 -LPE----LPPHLESLVASCNSLTE-LPELP-----------QSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             -CCS----CCTTCSEEECCSSCCSS-CCCCC-----------TTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred             -CCC----CcCCCCEEEccCCcCCc-ccccc-----------CCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence             332    23789999999999984 66543           456666666666652 2221   146666666666665


Q ss_pred             cccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccc
Q 045270          191 GTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW  270 (440)
Q Consensus       191 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~  270 (440)
                       .++  .+..+++|+.|++++|.++..+.     ..++|+.|++++|.++.+|.+..+++|+.|++++|.+.+ +|... 
T Consensus       145 -~lp--~~~~l~~L~~L~l~~N~l~~lp~-----~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~~-  214 (454)
T 1jl5_A          145 -KLP--ELQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDLP-  214 (454)
T ss_dssp             -SCC--CCTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred             -CCc--ccCCCCCCCEEECCCCcCcccCC-----CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCCc-
Confidence             243  35666666666666666654221     123566666666666666666666666666666666553 22221 


Q ss_pred             cccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccc------------
Q 045270          271 RVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADT------------  338 (440)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~------------  338 (440)
                          .+|++|++++|.+..++....+++|++|++++|++.+ ++..+++|+.|++++|.+. .+|...            
T Consensus       215 ----~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N~  288 (454)
T 1jl5_A          215 ----LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENI  288 (454)
T ss_dssp             ----TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSC
T ss_pred             ----CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCccc-ccCcccCcCCEEECcCCc
Confidence                2366666666666555544455666666666665543 2223345555555555554 233210            


Q ss_pred             ----cccCCCcceEecccccccccchhhhhcc-CCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCC
Q 045270          339 ----GNFMPRLRYFCAANNGLTGIIPASLCNA-TTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCK  413 (440)
Q Consensus       339 ----~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~  413 (440)
                          ....++|++|++++|.+++.     ..+ ++|++|++++|++.+++..  ..+|+.|++++|+++. +|.   .++
T Consensus       289 l~~l~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~~-lp~---~l~  357 (454)
T 1jl5_A          289 FSGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAE-VPE---LPQ  357 (454)
T ss_dssp             CSEESCCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC-CCC---CCT
T ss_pred             cCcccCcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccccccc--CCcCCEEECCCCcccc-ccc---hhh
Confidence                00123455555555554431     122 5889999999998887654  4679999999999984 444   478


Q ss_pred             CCcEEECCCCcccc--cCcccccCC
Q 045270          414 MLEVLNLGNNQFSD--KFPCWLYDA  436 (440)
Q Consensus       414 ~L~~L~l~~n~~~~--~~~~~l~~~  436 (440)
                      +|+.|++++|++++  .+|.++.++
T Consensus       358 ~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          358 NLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             hccEEECCCCCCCcCCCChHHHHhh
Confidence            99999999999998  788877665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.5e-34  Score=271.84  Aligned_cols=346  Identities=20%  Similarity=0.205  Sum_probs=243.3

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      +++++|+++++.+++. |   .+..+++|++|++++|.+...  +  ++.+++|++|++++|.+.+ ++  ++++++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~---~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~  110 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T---GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTY  110 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T---TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred             CCCCEEEccCCCcccC-h---hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCE
Confidence            6788888888888762 2   588888889999988887653  3  7788888999998888874 33  788888899


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      |++++|.+.+ ++   ++.+++|++|++++|.+++ ++  +        ..+++|++|++++|...+.+  .+..+++|+
T Consensus       111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~-l~--l--------~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTE-ID--V--------SHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSC-CC--C--------TTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             EECCCCcCCe-ec---CCCCCcCCEEECCCCccce-ec--c--------ccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            9998888874 32   6788888888888888874 32  3        33468888888888544344  467788888


Q ss_pred             EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcc
Q 045270          181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ  260 (440)
Q Consensus       181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~  260 (440)
                      +|++++|.+. .++   +..+++|+.|++++|.++...    +..+++|+.|++++|.++.+| +..+++|+.|++++|.
T Consensus       174 ~L~ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          174 TLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             EEECCSSCCC-CCC---CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC
T ss_pred             EEECCCCccc-eec---cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCc
Confidence            8888888887 343   677888888888888887552    567788888888888888887 7888888888888888


Q ss_pred             cccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCccc-CCCCCccEEEccCCcccccCCcc--
Q 045270          261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH-QLPNNLIYIDFSNNNFTSSIPAD--  337 (440)
Q Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~--  337 (440)
                      +.+..+..     .++|+.++++.+.+            +.+++++|...+..+ ..+++|+.|++++|...+.+|..  
T Consensus       245 l~~~~~~~-----l~~L~~L~l~~n~L------------~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~  307 (457)
T 3bz5_A          245 LTELDVST-----LSKLTTLHCIQTDL------------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA  307 (457)
T ss_dssp             CSCCCCTT-----CTTCCEEECTTCCC------------SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred             CCCcCHHH-----CCCCCEEeccCCCC------------CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCC
Confidence            87643322     23466666655433            233333333322221 12345555555555433332211  


Q ss_pred             -----ccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcC
Q 045270          338 -----TGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANC  412 (440)
Q Consensus       338 -----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  412 (440)
                           ....+++|+.|++++|.+++.   .+..+++|+.|++++|++.+++      .|+.|+++.|.+.+.     ..+
T Consensus       308 ~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l~------~L~~L~l~~n~l~g~-----~~~  373 (457)
T 3bz5_A          308 GITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFS------SVGKIPALNNNFEAE-----GQT  373 (457)
T ss_dssp             CCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBCT------TGGGSSGGGTSEEEE-----EEE
T ss_pred             cceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCcc------ccccccccCCcEEec-----cee
Confidence                 012257899999999999874   3888899999999999988753      456666777766654     244


Q ss_pred             CCCcEEECCCCcccccCccccc
Q 045270          413 KMLEVLNLGNNQFSDKFPCWLY  434 (440)
Q Consensus       413 ~~L~~L~l~~n~~~~~~~~~l~  434 (440)
                      ..|..+++++|.+++.+|..+.
T Consensus       374 ~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          374 ITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             EECCCBCCBTTBEEEECCTTCB
T ss_pred             eecCccccccCcEEEEcChhHh
Confidence            5667778888888887776554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-33  Score=279.59  Aligned_cols=396  Identities=20%  Similarity=0.170  Sum_probs=255.0

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      +++++|+|++|.+++..+.  +|..+++|++|++++|++... .+..|.++++|++|++++|.+.+..+..|+++++|++
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~  152 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  152 (635)
T ss_dssp             TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             CCCCEEECCCCcCCCcChh--HhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence            6899999999999876666  899999999999999998654 4567899999999999999999766677999999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc-------------------cCcccccEEEcC
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN-------------------ASSSALDTLDLS  161 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-------------------~~~~~L~~L~l~  161 (440)
                      |++++|.+........+..+++|++|++++|.+.+..+..+..+..+..                   .....++.+++.
T Consensus       153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~  232 (635)
T 4g8a_A          153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR  232 (635)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred             eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhh
Confidence            9999999985444456899999999999999998666665554432211                   001112222222


Q ss_pred             CCccCC----------------------------------------------------------ccccccccccCccEEe
Q 045270          162 GNRLRG----------------------------------------------------------SIPVSVFELKKLTSLL  183 (440)
Q Consensus       162 ~~~~~~----------------------------------------------------------~~~~~~~~~~~L~~L~  183 (440)
                      ++....                                                          .....+....+++.+.
T Consensus       233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~  312 (635)
T 4g8a_A          233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS  312 (635)
T ss_dssp             SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred             cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence            221100                                                          0001122234455555


Q ss_pred             ccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270          184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~  263 (440)
                      +.++.+. ..  ..+.....++.|++.++.+......    .++.++.+.+..+.....+....+++|+.+++++|.+..
T Consensus       313 ~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  385 (635)
T 4g8a_A          313 LVSVTIE-RV--KDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF  385 (635)
T ss_dssp             EESCEEE-EC--GGGGSCCCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred             ccccccc-cc--cccccchhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence            5555543 22  2355667888888888776543322    234455555555555444444455555555555554432


Q ss_pred             ccCccccc-----------------------ccccceeEEEccCcccccccCC---ccCCceeEEEcCCccccCccc---
Q 045270          264 EIPNWIWR-----------------------VSVVGLHCLNLSHNLLVGFQGP---YSIPALRFIDLSSHQLRGNIH---  314 (440)
Q Consensus       264 ~~~~~~~~-----------------------~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~---  314 (440)
                      ........                       ...++++.+++..+......+.   ..+++++.++++.|.+.....   
T Consensus       386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             EEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence            11111111                       1223455566555544333322   345666777777766554332   


Q ss_pred             CCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hcccc
Q 045270          315 QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQ  392 (440)
Q Consensus       315 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~  392 (440)
                      ..++.++.|++++|.+...+....+..+++|++|++++|++++..|..|.++++|++|+|++|+++.++...+  .++|+
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence            2356777888877765433333334447788888888888877777777788888888888888777754433  35588


Q ss_pred             EEECCCCcccCCchhhhhcC-CCCcEEECCCCccc
Q 045270          393 TLDLNGNRLQGTVPKSIANC-KMLEVLNLGNNQFS  426 (440)
Q Consensus       393 ~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~  426 (440)
                      .|++++|++++..|..+.++ ++|+.|++++|++.
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            88888888887777777776 56888888887775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.3e-34  Score=260.23  Aligned_cols=268  Identities=32%  Similarity=0.481  Sum_probs=226.9

Q ss_pred             CCCCCCCCCcc--eeeeeeCCC---CceEEEeeccceeec--ccCCCccccccCCCCeEEecC-CccCCCccccchhcCC
Q 045270            1 MQWRQSTDCCD--WSGVDCDEA---GHVIGLDLSTESISG--GIENAASLFSLHYLRSLNLAR-TSFNGTQIPSKLANIS   72 (440)
Q Consensus         1 ~~w~~~~~~~~--~~~~~~~~~---~~l~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~-~~~~~~~l~~~~~~l~   72 (440)
                      ++|+.++++|.  |.||.|+..   ++|++|+++++.+++  ..|.  .+..+++|++|++++ +.+... +|..+++++
T Consensus        25 ~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~  101 (313)
T 1ogq_A           25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLT  101 (313)
T ss_dssp             TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCT
T ss_pred             cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCC
Confidence            47998899999  999999865   799999999999998  7777  899999999999995 777766 899999999


Q ss_pred             CCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCc
Q 045270           73 SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASS  152 (440)
Q Consensus        73 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~  152 (440)
                      +|++|++++|.+.+.+|..+.++++|++|++++|.+.+.++. .+..+++|++|++++|.+++.+|..++.++       
T Consensus       102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-------  173 (313)
T 1ogq_A          102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFS-------  173 (313)
T ss_dssp             TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGCCC-------
T ss_pred             CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCCHHHhhhh-------
Confidence            999999999999988999999999999999999999866655 588999999999999999888998887663       


Q ss_pred             ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL  232 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  232 (440)
                      +.|++|++++|.+.+..|..+..++ |++|++++|.+. ...+..+..+++|+.|++++|.++...+.  +..+++|++|
T Consensus       174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L  249 (313)
T 1ogq_A          174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE-GDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGL  249 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE-ECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEE
T ss_pred             hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc-CcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEE
Confidence            4899999999999888888888887 999999999987 34556788899999999999988754433  5667888899


Q ss_pred             ecCCCCCC-CCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcc
Q 045270          233 NLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL  286 (440)
Q Consensus       233 ~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  286 (440)
                      ++++|.++ .+|. +..+++|+.|++++|.+++.+|..   ...++|+.+++++|.
T Consensus       250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSS
T ss_pred             ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC---ccccccChHHhcCCC
Confidence            99888887 5665 788888888888888888777764   233446666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-33  Score=261.99  Aligned_cols=350  Identities=20%  Similarity=0.230  Sum_probs=221.6

Q ss_pred             CCCCCCCCCcc-eeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEc
Q 045270            1 MQWRQSTDCCD-WSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNL   79 (440)
Q Consensus         1 ~~w~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l   79 (440)
                      +.|..+.+||. |.+..|..    +.+.+...........  .-..++++++|+++++.+... .+..+..+++|++|++
T Consensus         4 ~~~~~~~~C~~~~~~~~c~~----~~~~i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L   76 (390)
T 3o6n_A            4 KPRQPEYKCIDSNLQYDCVF----YDVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNL   76 (390)
T ss_dssp             ---CCEECBCC------EEE----ESCEECSSCCCCEESC--SSGGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEEC
T ss_pred             CCCCCccceehhhhhhccce----eeeeeecccccccccc--cccccCCceEEEecCCchhhC-ChhHhcccccCcEEEC
Confidence            46888888887 44343321    1111111111111111  234567888888888877543 2334677888888888


Q ss_pred             ccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEE
Q 045270           80 SDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLD  159 (440)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~  159 (440)
                      ++|.+.+..+.++..+++|++|++++|.+.+ ++...+..+++|++|++++|.+. .+|..++       ..+++|++|+
T Consensus        77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-------~~l~~L~~L~  147 (390)
T 3o6n_A           77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIF-------HNTPKLTTLS  147 (390)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-------TTCTTCCEEE
T ss_pred             CCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEECCCCccC-cCCHHHh-------cCCCCCcEEE
Confidence            8888876666678888888888888888874 44446788888888888888887 5555432       2336888888


Q ss_pred             cCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCC
Q 045270          160 LSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL  239 (440)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  239 (440)
                      +++|.+....+..+..+++|++|++++|.+. ..+   +..+++|+.|++++|.+...      ...+.|+.|++++|.+
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSI  217 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCC
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeeccccccccc------CCCCcceEEECCCCee
Confidence            8888887666667888888888888888876 333   56778888888888877533      2345788889998888


Q ss_pred             CCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCC
Q 045270          240 REIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNN  319 (440)
Q Consensus       240 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  319 (440)
                      +.++. ...++|+.|++++|.+.+.  ..+.  ..++|++|++++|.+....+.                   ....+++
T Consensus       218 ~~~~~-~~~~~L~~L~l~~n~l~~~--~~l~--~l~~L~~L~Ls~n~l~~~~~~-------------------~~~~l~~  273 (390)
T 3o6n_A          218 NVVRG-PVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYNELEKIMYH-------------------PFVKMQR  273 (390)
T ss_dssp             CEEEC-CCCSSCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCEEESG-------------------GGTTCSS
T ss_pred             eeccc-cccccccEEECCCCCCccc--HHHc--CCCCccEEECCCCcCCCcChh-------------------Hcccccc
Confidence            87765 3357888999988887642  2221  223344444444443332111                   1112345


Q ss_pred             ccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCC
Q 045270          320 LIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGN  399 (440)
Q Consensus       320 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n  399 (440)
                      |++|++++|.+. .++..+.. +++|+.|++++|.++ ..+..+..+++|++|++++|.++.++ ....++|+.|++++|
T Consensus       274 L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          274 LERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CCEEECCSSCCC-EEECSSSC-CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSS
T ss_pred             CCEEECCCCcCc-ccCcccCC-CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCC
Confidence            566666666655 33433333 677777777777776 34555667777777777777777664 222445777777777


Q ss_pred             cccCC
Q 045270          400 RLQGT  404 (440)
Q Consensus       400 ~~~~~  404 (440)
                      ++.+.
T Consensus       350 ~~~~~  354 (390)
T 3o6n_A          350 DWDCN  354 (390)
T ss_dssp             CEEHH
T ss_pred             Cccch
Confidence            77654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=264.41  Aligned_cols=298  Identities=18%  Similarity=0.178  Sum_probs=151.6

Q ss_pred             CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270           47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA  126 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L  126 (440)
                      +++++|++++|.+... .+..|.++++|++|++++|.+.+..|.+|.++++|++|+|++|.+. .++...+..+++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            3555666665555443 3445555566666666666555444555556666666666666555 3333345555666666


Q ss_pred             EecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcE
Q 045270          127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAK  206 (440)
Q Consensus       127 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  206 (440)
                      ++++|.+....+..+..+        ++|++|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          110 DISENKIVILLDYMFQDL--------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIV  180 (477)
T ss_dssp             ECTTSCCCEECTTTTTTC--------TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCE
T ss_pred             ECCCCccccCChhHcccc--------ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcE
Confidence            666665554444444332        45666666666555444455555666666666666554 444445556666666


Q ss_pred             EEcCCCcccccCCccccCCccccceeecCCCCC-CCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccC
Q 045270          207 LDLSYNSLAVDESSRNYSFSPMLELLNLASCKL-REIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSH  284 (440)
Q Consensus       207 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (440)
                      |++++|.+....... +..+++|+.|++++|.. ..++. .....+|+.|++++|.+.+..+..+.  ..++|+.|++++
T Consensus       181 L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~  257 (477)
T 2id5_A          181 LRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR--HLVYLRFLNLSY  257 (477)
T ss_dssp             EEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT--TCTTCCEEECCS
T ss_pred             EeCCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc--CccccCeeECCC
Confidence            666666555443332 45556666666666543 23332 33334666666666665432212221  122344444444


Q ss_pred             cccccccCC--ccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhh
Q 045270          285 NLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS  362 (440)
Q Consensus       285 ~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  362 (440)
                      |.+....+.  ..++                     +|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+..
T Consensus       258 n~l~~~~~~~~~~l~---------------------~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          258 NPISTIEGSMLHELL---------------------RLQEIQLVGGQLAVVEPYAFRG-LNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             SCCCEECTTSCTTCT---------------------TCCEEECCSSCCSEECTTTBTT-CTTCCEEECCSSCCSCCCGGG
T ss_pred             CcCCccChhhccccc---------------------cCCEEECCCCccceECHHHhcC-cccCCEEECCCCcCceeCHhH
Confidence            444333221  1233                     3444444444444222222222 555555555555555444444


Q ss_pred             hhccCCCCEEEcCCCcCC
Q 045270          363 LCNATTLSLLDLSNNSFM  380 (440)
Q Consensus       363 ~~~~~~L~~L~l~~n~i~  380 (440)
                      |..+++|++|++++|.+.
T Consensus       316 ~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             BSCGGGCCEEECCSSCEE
T ss_pred             cCCCcccCEEEccCCCcc
Confidence            555555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-32  Score=268.72  Aligned_cols=312  Identities=21%  Similarity=0.248  Sum_probs=207.3

Q ss_pred             ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270           45 SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV  124 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~  124 (440)
                      .+++++.++++++.+... .+..+..+++|++|++++|.+.+..|..|..+++|++|+|++|.+.+ ++...++.+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCC
Confidence            567888888888777543 33446778888888888888876666678888888888888888874 4444578888888


Q ss_pred             EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCC
Q 045270          125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL  204 (440)
Q Consensus       125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  204 (440)
                      +|++++|.+. .+|..++       ..+++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+   +..+++|
T Consensus       127 ~L~L~~n~l~-~l~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L  194 (597)
T 3oja_B          127 VLVLERNDLS-SLPRGIF-------HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSL  194 (597)
T ss_dssp             EEECCSSCCC-CCCTTTT-------TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTC
T ss_pred             EEEeeCCCCC-CCCHHHh-------ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhh
Confidence            8888888887 4554432       23368888888888887666667888888888888888876 333   4567888


Q ss_pred             cEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccC
Q 045270          205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSH  284 (440)
Q Consensus       205 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (440)
                      +.|++++|.+...      ...+.|+.|++++|.+..++. ...++|+.|++++|.+++.  ..+.  ..++|+.|++++
T Consensus       195 ~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~--~~l~--~l~~L~~L~Ls~  263 (597)
T 3oja_B          195 FHANVSYNLLSTL------AIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSY  263 (597)
T ss_dssp             SEEECCSSCCSEE------ECCTTCSEEECCSSCCCEEEC-SCCSCCCEEECCSSCCCCC--GGGG--GCTTCSEEECCS
T ss_pred             hhhhcccCccccc------cCCchhheeeccCCccccccc-ccCCCCCEEECCCCCCCCC--hhhc--cCCCCCEEECCC
Confidence            8888888876532      334568888888888877665 2236788888888887642  2222  223355555555


Q ss_pred             cccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhh
Q 045270          285 NLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLC  364 (440)
Q Consensus       285 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  364 (440)
                      |.+....+.                   ....+++|+.|+|++|.+. .+|..+.. +|+|+.|++++|.++ .+|..+.
T Consensus       264 N~l~~~~~~-------------------~~~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~i~~~~~  321 (597)
T 3oja_B          264 NELEKIMYH-------------------PFVKMQRLERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQP  321 (597)
T ss_dssp             SCCCEEESG-------------------GGTTCSSCCEEECTTSCCC-EEECSSSC-CTTCCEEECCSSCCC-CCGGGHH
T ss_pred             CccCCCCHH-------------------HhcCccCCCEEECCCCCCC-CCCccccc-CCCCcEEECCCCCCC-ccCcccc
Confidence            444433211                   0111345555556666555 23433333 677777777777776 4555666


Q ss_pred             ccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCC
Q 045270          365 NATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGT  404 (440)
Q Consensus       365 ~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~  404 (440)
                      .+++|+.|++++|.+..++. ...++|+.|++++|++.+.
T Consensus       322 ~l~~L~~L~L~~N~l~~~~~-~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTLKL-STHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             HHTTCSEEECCSSCCCCCCC-CTTCCCSEEECCSSCEEHH
T ss_pred             cCCCCCEEECCCCCCCCcCh-hhcCCCCEEEeeCCCCCCh
Confidence            77777777777777766642 2234577777777776643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=263.41  Aligned_cols=318  Identities=21%  Similarity=0.221  Sum_probs=238.6

Q ss_pred             CCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEe
Q 045270           49 LRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVL  128 (440)
Q Consensus        49 L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l  128 (440)
                      -+.++.++..+..  +|..+.  +++++|++++|.+.+..+..|.++++|++|+|++|.+.+ +....+..+++|++|++
T Consensus        13 ~~~v~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFVA--VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCc--CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEEC
Confidence            3567777666643  566554  689999999999987778889999999999999999884 43446889999999999


Q ss_pred             cCCccCCCCCc-cccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270          129 SDNSLNGSIPR-SMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL  207 (440)
Q Consensus       129 ~~~~~~~~~~~-~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  207 (440)
                      ++|.+. .+|. .+.        .+++|++|++++|.+....+..|..+++|++|++++|.+. .+....+..+++|+.|
T Consensus        88 ~~n~l~-~~~~~~~~--------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L  157 (477)
T 2id5_A           88 RSNRLK-LIPLGVFT--------GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL  157 (477)
T ss_dssp             CSSCCC-SCCTTSST--------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEE
T ss_pred             CCCcCC-ccCccccc--------CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEE
Confidence            999988 4444 343        3478999999999988666778888999999999998887 4555667888889999


Q ss_pred             EcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCc
Q 045270          208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN  285 (440)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  285 (440)
                      ++++|.++...... +..+++|+.|++++|.+..++.  +..+++|+.|++++|...+..+......  .+|+.|++++|
T Consensus       158 ~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n  234 (477)
T 2id5_A          158 TLEKCNLTSIPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSLSITHC  234 (477)
T ss_dssp             EEESCCCSSCCHHH-HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT--CCCSEEEEESS
T ss_pred             ECCCCcCcccChhH-hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC--ccccEEECcCC
Confidence            99888887554433 6678888888888888876655  7788888888888876655555443221  13555555555


Q ss_pred             ccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhc
Q 045270          286 LLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCN  365 (440)
Q Consensus       286 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  365 (440)
                      .++.++..                   ....+++|+.|++++|.+. .++...+..+++|+.|++++|.+++..+..|..
T Consensus       235 ~l~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          235 NLTAVPYL-------------------AVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             CCCSCCHH-------------------HHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred             cccccCHH-------------------HhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcC
Confidence            44432210                   1223467888888888877 444444444899999999999998888888999


Q ss_pred             cCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCC
Q 045270          366 ATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGT  404 (440)
Q Consensus       366 ~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~  404 (440)
                      +++|++|++++|.++.++...+  ..+|+.|++++|++.+.
T Consensus       295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            9999999999999998876554  45699999999988854

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-31  Score=254.23  Aligned_cols=317  Identities=22%  Similarity=0.252  Sum_probs=250.9

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL  121 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~  121 (440)
                      .++.+++|++|++++|.+..  +| .++.+++|++|++++|.+.+ +|  +..+++|++|++++|.+.+. +   ++.++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~  106 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D---VTPLT  106 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C---CTTCT
T ss_pred             ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e---cCCCC
Confidence            68899999999999999865  45 68899999999999999985 44  88999999999999998853 2   78899


Q ss_pred             cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270          122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL  201 (440)
Q Consensus       122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  201 (440)
                      +|++|++++|.+++ ++  +.        .+++|++|++++|.+.+ +  .+..+++|++|++++|...+.+   .+..+
T Consensus       107 ~L~~L~L~~N~l~~-l~--~~--------~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l  169 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-LD--VS--------QNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL---DVTPQ  169 (457)
T ss_dssp             TCCEEECCSSCCSC-CC--CT--------TCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC---CCTTC
T ss_pred             cCCEEECCCCcCCe-ec--CC--------CCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc---ccccC
Confidence            99999999999984 44  43        44799999999999985 4  3788999999999999654444   36788


Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN  281 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  281 (440)
                      ++|+.|++++|.++...    +..+++|+.|++++|.++.++ +..+++|+.|++++|.+.+ +|  +.  ..++|+.|+
T Consensus       170 ~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~-ip--~~--~l~~L~~L~  239 (457)
T 3bz5_A          170 TQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTE-ID--VT--PLTQLTYFD  239 (457)
T ss_dssp             TTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEE
T ss_pred             CcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccc-cC--cc--ccCCCCEEE
Confidence            99999999999987653    667889999999999999885 8889999999999999986 44  32  445699999


Q ss_pred             ccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchh
Q 045270          282 LSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPA  361 (440)
Q Consensus       282 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  361 (440)
                      +++|.++..+ ...+++|+.++++.+           +|+.|++++|.+.+.+|.   ..+++|+.|++++|...+..|.
T Consensus       240 l~~N~l~~~~-~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          240 CSVNPLTELD-VSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             CCSSCCSCCC-CTTCTTCCEEECTTC-----------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEEC
T ss_pred             eeCCcCCCcC-HHHCCCCCEEeccCC-----------CCCEEECCCCccCCcccc---cccccCCEEECCCCcccceecc
Confidence            9999998875 456889999998775           578889999987767663   2389999999999987666553


Q ss_pred             hhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270          362 SLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD  427 (440)
Q Consensus       362 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  427 (440)
                         ..++|+.|++++|           ++|+.|++++|++++. +  ++++++|+.|++++|++++
T Consensus       305 ---~~~~L~~L~l~~~-----------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          305 ---QAAGITELDLSQN-----------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             ---TTCCCSCCCCTTC-----------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             ---CCCcceEechhhc-----------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence               2345555555554           3466666666666653 2  5666666666666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.4e-31  Score=244.93  Aligned_cols=308  Identities=20%  Similarity=0.269  Sum_probs=191.7

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL  121 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~  121 (440)
                      .+..+++|++|+++++.+..  ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+ ++  .+..++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~~--~~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-IS--ALQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG--GGTTCT
T ss_pred             cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-ch--HHcCCC
Confidence            35566777777777776643  23 3666777777777777766 3333 6777777777777776663 33  366677


Q ss_pred             cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270          122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL  201 (440)
Q Consensus       122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  201 (440)
                      +|++|++++|.+. .++. +        ..+++|++|++++|..... +..+..+++|++|++++|.+. ..+.  +..+
T Consensus       111 ~L~~L~l~~n~i~-~~~~-~--------~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l  176 (347)
T 4fmz_A          111 NLRELYLNEDNIS-DISP-L--------ANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK-DVTP--IANL  176 (347)
T ss_dssp             TCSEEECTTSCCC-CCGG-G--------TTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCC-CCGG--GGGC
T ss_pred             cCCEEECcCCccc-Cchh-h--------ccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcC-Cchh--hccC
Confidence            7777777777665 2332 2        2335677777776654422 233666667777777766664 2221  5566


Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN  281 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  281 (440)
                      ++|+.|++++|.+.....   +..+++|+.+++++|.++.++.+..+++|+.|++++|.+.+..+  +  ...++|+.|+
T Consensus       177 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~  249 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--L--ANLSQLTWLE  249 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEE
T ss_pred             CCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--h--hcCCCCCEEE
Confidence            666666666666554332   44556666666666666655555566666666666665543222  1  1223344444


Q ss_pred             ccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchh
Q 045270          282 LSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPA  361 (440)
Q Consensus       282 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  361 (440)
                      +++|.++.+..                     ...+++|+.|++++|.+. .++ . +..+++|+.|++++|.+++..+.
T Consensus       250 l~~n~l~~~~~---------------------~~~l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          250 IGTNQISDINA---------------------VKDLTKLKMLNVGSNQIS-DIS-V-LNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCSSCCCCCGG---------------------GTTCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCGGGHH
T ss_pred             CCCCccCCChh---------------------HhcCCCcCEEEccCCccC-CCh-h-hcCCCCCCEEECcCCcCCCcChh
Confidence            44444433222                     222456777777777776 332 2 33388899999999988888888


Q ss_pred             hhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCccc
Q 045270          362 SLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQ  402 (440)
Q Consensus       362 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~  402 (440)
                      .+..+++|++|++++|.+++.+.....++|++|++++|.++
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred             HhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence            88889999999999999888866555677999999998875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.2e-31  Score=242.17  Aligned_cols=307  Identities=21%  Similarity=0.290  Sum_probs=223.3

Q ss_pred             chhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccc
Q 045270           67 KLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPI  146 (440)
Q Consensus        67 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  146 (440)
                      .+..+++|++|+++++.+. .++ .+..+++|++|++++|.+.+ ++.  +..+++|++|++++|.+. .++ .+     
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~L~~n~i~-~~~-~~-----  106 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP--LSNLVKLTNLYIGTNKIT-DIS-AL-----  106 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC-CCG-GG-----
T ss_pred             cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh--hhcCCcCCEEEccCCccc-Cch-HH-----
Confidence            4567889999999999887 444 48889999999999998873 433  788889999999998886 333 23     


Q ss_pred             ccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCc
Q 045270          147 FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS  226 (440)
Q Consensus       147 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  226 (440)
                         ..+++|++|++++|.+.. .+. +..+++|++|++++|......+  .+..+++|+.|++++|.+.....   +..+
T Consensus       107 ---~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~---~~~l  176 (347)
T 4fmz_A          107 ---QNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP---IANL  176 (347)
T ss_dssp             ---TTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG---GGGC
T ss_pred             ---cCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh---hccC
Confidence               344788888888888873 443 7778888888888885543333  36778888888888887754433   5567


Q ss_pred             cccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCC
Q 045270          227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSS  306 (440)
Q Consensus       227 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  306 (440)
                      ++|+.|++++|.++.++.+..+++|+.+++++|.+.+..+  +  ...++|++|++++|.++..++              
T Consensus       177 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~~n~l~~~~~--------------  238 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--V--ANMTRLNSLKIGNNKITDLSP--------------  238 (347)
T ss_dssp             TTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGG--------------
T ss_pred             CCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--h--hcCCcCCEEEccCCccCCCcc--------------
Confidence            7788888888877777667777777777777776654322  2  123335555555555444332              


Q ss_pred             ccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchh
Q 045270          307 HQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAF  386 (440)
Q Consensus       307 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  386 (440)
                             ...+++|++|++++|.+. .++ . +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+...
T Consensus       239 -------~~~l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          239 -------LANLSQLTWLEIGTNQIS-DIN-A-VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             -------GTTCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred             -------hhcCCCCCEEECCCCccC-CCh-h-HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence                   223457777888888776 332 2 33489999999999999865  46889999999999999998875443


Q ss_pred             h--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270          387 L--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD  427 (440)
Q Consensus       387 ~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  427 (440)
                      +  .++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred             hhccccCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence            3  4679999999999997766  8899999999999999863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-31  Score=249.04  Aligned_cols=310  Identities=22%  Similarity=0.216  Sum_probs=226.1

Q ss_pred             cCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc
Q 045270           70 NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN  149 (440)
Q Consensus        70 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~  149 (440)
                      .++++++|+++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..|..+..+     
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----  116 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-----  116 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC-----
Confidence            4688999999999888444444688899999999999887 4444468888899999999988886556556544     


Q ss_pred             cCcccccEEEcCCCccCCcccc-ccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccc
Q 045270          150 ASSSALDTLDLSGNRLRGSIPV-SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM  228 (440)
Q Consensus       150 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  228 (440)
                         ++|++|++++|.+. .+|. .|..+++|++|++++|.+. .++...+..+++|+.|++++|.++...    ...+++
T Consensus       117 ---~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~  187 (390)
T 3o6n_A          117 ---PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPS  187 (390)
T ss_dssp             ---TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTT
T ss_pred             ---CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCccc----cccccc
Confidence               68888888888887 4444 3577888888888888876 455556777888888888888776442    345667


Q ss_pred             cceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcc
Q 045270          229 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ  308 (440)
Q Consensus       229 L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  308 (440)
                      |+.+++++|.++.++   ..+.|+.|++++|.+... +...    .++|+.|++++|.++....                
T Consensus       188 L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~-~~~~----~~~L~~L~l~~n~l~~~~~----------------  243 (390)
T 3o6n_A          188 LFHANVSYNLLSTLA---IPIAVEELDASHNSINVV-RGPV----NVELTILKLQHNNLTDTAW----------------  243 (390)
T ss_dssp             CSEEECCSSCCSEEE---CCSSCSEEECCSSCCCEE-ECCC----CSSCCEEECCSSCCCCCGG----------------
T ss_pred             cceeecccccccccC---CCCcceEEECCCCeeeec-cccc----cccccEEECCCCCCcccHH----------------
Confidence            777777777665543   334667777777666432 2111    1235555555544443221                


Q ss_pred             ccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-
Q 045270          309 LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-  387 (440)
Q Consensus       309 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-  387 (440)
                           ...+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++ .+..+..+++|++|++++|++..++..+. 
T Consensus       244 -----l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  316 (390)
T 3o6n_A          244 -----LLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQ  316 (390)
T ss_dssp             -----GGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHH
T ss_pred             -----HcCCCCccEEECCCCcCCCcChhHccc-cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccc
Confidence                 122467888888888887555555555 9999999999999985 56667789999999999999998865543 


Q ss_pred             hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270          388 NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK  428 (440)
Q Consensus       388 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  428 (440)
                      .++|+.|++++|+++...   +..+++|+.|++++|++...
T Consensus       317 l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          317 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             cCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence            577999999999998653   67789999999999999754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.5e-30  Score=254.70  Aligned_cols=310  Identities=22%  Similarity=0.188  Sum_probs=233.3

Q ss_pred             CCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccccc
Q 045270           71 ISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNA  150 (440)
Q Consensus        71 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~  150 (440)
                      +.+++.++++++.+....+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+..|..+..+      
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV------  122 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC------
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC------
Confidence            6789999999999885555557889999999999999884 444468899999999999999886666555544      


Q ss_pred             CcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccc
Q 045270          151 SSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLE  230 (440)
Q Consensus       151 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  230 (440)
                        ++|++|++++|.+....+..|..+++|++|++++|.+. ..++..+..+++|+.|++++|.++...    ...+++|+
T Consensus       123 --~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~  195 (597)
T 3oja_B          123 --PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLF  195 (597)
T ss_dssp             --TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCS
T ss_pred             --CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhh
Confidence              68999999999888444444678889999999988887 555566788888888888888876543    44567778


Q ss_pred             eeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcccc
Q 045270          231 LLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR  310 (440)
Q Consensus       231 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (440)
                      .|++++|.++.++   ..+.|+.|++++|.+....+..     .++|+.|++++|.++....                  
T Consensus       196 ~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~~~------------------  249 (597)
T 3oja_B          196 HANVSYNLLSTLA---IPIAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDTAW------------------  249 (597)
T ss_dssp             EEECCSSCCSEEE---CCTTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCCCGG------------------
T ss_pred             hhhcccCcccccc---CCchhheeeccCCccccccccc-----CCCCCEEECCCCCCCCChh------------------
Confidence            8888777666543   3456777777777664322211     1235555555554443211                  


Q ss_pred             CcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hc
Q 045270          311 GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NC  389 (440)
Q Consensus       311 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~  389 (440)
                         ...+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+++ .+..+..+++|+.|++++|.+..+|..+. .+
T Consensus       250 ---l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~  324 (597)
T 3oja_B          250 ---LLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD  324 (597)
T ss_dssp             ---GGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHT
T ss_pred             ---hccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCC
Confidence               122467888888888888666666655 9999999999999985 56667789999999999999998876544 67


Q ss_pred             cccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270          390 LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK  428 (440)
Q Consensus       390 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  428 (440)
                      +|+.|++++|.+.+..   +..+++|+.|++++|++.+.
T Consensus       325 ~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          325 RLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            7999999999998653   66789999999999999754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.4e-32  Score=260.60  Aligned_cols=385  Identities=20%  Similarity=0.174  Sum_probs=228.3

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCC---ccccchhcCCCCcEEEcccCccccCCccccc-ccc
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGT---QIPSKLANISSLTYLNLSDAGFAGHIPLQIS-SMA   96 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~   96 (440)
                      +++++||++++.++..... ..+..+++|++|++++|.+...   .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            4688999999988754332 1378899999999999987643   2566778889999999999988754444433 344


Q ss_pred             ----cCceecCCCCcccCcc---chhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc-
Q 045270           97 ----RLVALDFSFNQFSGSI---SSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS-  168 (440)
Q Consensus        97 ----~L~~L~L~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~-  168 (440)
                          +|++|++++|.+.+..   ....+..+++|++|++++|.+.+..+..+....   ....++|++|++++|.+... 
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH---TSTTCCCCEEECTTSCCBGGG
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH---hcCCCcceEEECCCCCCCHHH
Confidence                6999999999877421   233577888888888888887644444333210   01234688888888877642 


Q ss_pred             ---cccccccccCccEEeccccccccccchhhHh-----cCCCCcEEEcCCCcccccCC---ccccCCccccceeecCCC
Q 045270          169 ---IPVSVFELKKLTSLLLSSNNLHGTVQLDKIL-----NLGNLAKLDLSYNSLAVDES---SRNYSFSPMLELLNLASC  237 (440)
Q Consensus       169 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~  237 (440)
                         ++..+..+++|++|++++|.+. ......+.     ..++|+.|++++|.++....   ...+..+++|++|++++|
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNNDIN-EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCH-HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHhhCCCCCEEECcCCCcc-hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence               2444555678888888877765 22222222     24577777777776654321   111334566666666666


Q ss_pred             CCCCCC------C-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcccc
Q 045270          238 KLREIP------N-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR  310 (440)
Q Consensus       238 ~l~~l~------~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (440)
                      .++...      . +..+++|+.|++++|.+++.....+..                    ....+++|++|++++|.+.
T Consensus       238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--------------------VLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--------------------HHHHCTTCCEEECTTCCCH
T ss_pred             cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--------------------HHhhCCCcceEECCCCCCc
Confidence            554321      1 224556666666666554321111100                    0012344555555555443


Q ss_pred             Cc--------ccCCCCCccEEEccCCccccc----CCccccccCCCcceEecccccccccchhhhhc-----cCCCCEEE
Q 045270          311 GN--------IHQLPNNLIYIDFSNNNFTSS----IPADTGNFMPRLRYFCAANNGLTGIIPASLCN-----ATTLSLLD  373 (440)
Q Consensus       311 ~~--------~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~  373 (440)
                      +.        .....++|++|++++|.+++.    ++..+.. +++|++|++++|.+++..+..+..     .++|++|+
T Consensus       298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence            21        111224677777777766533    1222222 677888888887776554444432     56788888


Q ss_pred             cCCCcCCC-----CCchhh-hccccEEECCCCcccCCchhhhh-----cCCCCcEEECCCCcccccCcc
Q 045270          374 LSNNSFMK-----KSDAFL-NCLLQTLDLNGNRLQGTVPKSIA-----NCKMLEVLNLGNNQFSDKFPC  431 (440)
Q Consensus       374 l~~n~i~~-----~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~  431 (440)
                      +++|.+++     ++..+. .++|++|++++|++++.....+.     ...+|+.|++.++.+....++
T Consensus       377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence            88887764     232222 34588888888877765443332     234577777777766554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.8e-28  Score=221.77  Aligned_cols=288  Identities=22%  Similarity=0.266  Sum_probs=155.8

Q ss_pred             CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      +++.++++++.+..  +|..+.  +++++|++++|.+.+..+..+.++++|++|++++|.+.+ +....+..+++|++|+
T Consensus        32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-eCHHHhcCCCCCCEEE
Confidence            56666666555532  444333  456666666666654444455566666666666665552 2222345555555555


Q ss_pred             ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270          128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL  207 (440)
Q Consensus       128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  207 (440)
                      +++|.++ .+|..+.                                  ++|++|++++|.+. ..+...+..+++|+.|
T Consensus       107 Ls~n~l~-~l~~~~~----------------------------------~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L  150 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP----------------------------------KTLQELRVHENEIT-KVRKSVFNGLNQMIVV  150 (330)
T ss_dssp             CCSSCCS-BCCSSCC----------------------------------TTCCEEECCSSCCC-BBCHHHHTTCTTCCEE
T ss_pred             CCCCcCC-ccChhhc----------------------------------ccccEEECCCCccc-ccCHhHhcCCccccEE
Confidence            5555544 3333221                                  34444555444444 3333444555555555


Q ss_pred             EcCCCccccc-CCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcc
Q 045270          208 DLSYNSLAVD-ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL  286 (440)
Q Consensus       208 ~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  286 (440)
                      ++++|.+... .....+..+++|+.|++++|.++.+|.. ..++|+.|++++|.+.+..+..+..               
T Consensus       151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~---------------  214 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKG---------------  214 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTT---------------
T ss_pred             ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCCCcCCccCHHHhcC---------------
Confidence            5555554321 1111244455566666666666555541 1256666666666655433333211               


Q ss_pred             cccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhcc
Q 045270          287 LVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNA  366 (440)
Q Consensus       287 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  366 (440)
                                                    +++|++|++++|.+.+..+..+.. +++|++|++++|.++ ..|..+..+
T Consensus       215 ------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          215 ------------------------------LNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             ------------------------------CTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             ------------------------------CCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCCcCc-cCChhhccC
Confidence                                          123444445555544222222323 667777777777766 455666677


Q ss_pred             CCCCEEEcCCCcCCCCCchhh--------hccccEEECCCCcccC--CchhhhhcCCCCcEEECCCCc
Q 045270          367 TTLSLLDLSNNSFMKKSDAFL--------NCLLQTLDLNGNRLQG--TVPKSIANCKMLEVLNLGNNQ  424 (440)
Q Consensus       367 ~~L~~L~l~~n~i~~~~~~~~--------~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~  424 (440)
                      ++|++|++++|.++.++...+        ...++.+++++|++..  ..|..|..+++|+.+++++|+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            777777777777776644333        2347888888888764  556788889999999998874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.5e-31  Score=256.15  Aligned_cols=376  Identities=18%  Similarity=0.160  Sum_probs=257.8

Q ss_pred             CceEEEeeccceeecc----cCCCccccccCCCCeEEecCCccCCCccccch-hcCC----CCcEEEcccCcccc----C
Q 045270           21 GHVIGLDLSTESISGG----IENAASLFSLHYLRSLNLARTSFNGTQIPSKL-ANIS----SLTYLNLSDAGFAG----H   87 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~-~~l~----~L~~L~l~~~~~~~----~   87 (440)
                      +++++|++++|.+++.    .+.  .+..+++|++|++++|.+... .+..+ ..++    +|++|++++|.+..    .
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISS--ALRVNPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHH--HHHTCTTCCEEECTTCCCHHH-HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHH--HHHhCCCcCEEeCCCCcCChH-HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            6899999999998743    233  577889999999999988654 23333 3455    79999999999874    4


Q ss_pred             CcccccccccCceecCCCCcccCccchh----hhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCC
Q 045270           88 IPLQISSMARLVALDFSFNQFSGSISSI----RWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN  163 (440)
Q Consensus        88 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~  163 (440)
                      ++..+..+++|++|++++|.+.+.....    .....++|++|++++|.+++..+..+....    ..+++|++|++++|
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l----~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL----RAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH----HHCTTCCEEECCSS
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH----hhCCCCCEEECcCC
Confidence            5888899999999999999987433221    122356899999999998754332222211    23479999999999


Q ss_pred             ccCCccccccc-----cccCccEEecccccccccc---chhhHhcCCCCcEEEcCCCcccccCC----ccccCCccccce
Q 045270          164 RLRGSIPVSVF-----ELKKLTSLLLSSNNLHGTV---QLDKILNLGNLAKLDLSYNSLAVDES----SRNYSFSPMLEL  231 (440)
Q Consensus       164 ~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~  231 (440)
                      .+....+..+.     ..++|++|++++|.+....   ....+..+++|+.|++++|.++....    ...+..+++|+.
T Consensus       181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~  260 (461)
T 1z7x_W          181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT  260 (461)
T ss_dssp             BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence            88744333333     2569999999999887321   23456789999999999998865432    111335789999


Q ss_pred             eecCCCCCCC-----CCC-CcccCcccEEeccCcccccccCcccccc---cccceeEEEccCcccccccCCccCCceeEE
Q 045270          232 LNLASCKLRE-----IPN-LKNQSQLQYLYLSENQISREIPNWIWRV---SVVGLHCLNLSHNLLVGFQGPYSIPALRFI  302 (440)
Q Consensus       232 L~l~~~~l~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L  302 (440)
                      |++++|.++.     ++. +..+++|++|++++|.+.+..+..+...   ..++|++|++++|.++...... +      
T Consensus       261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-l------  333 (461)
T 1z7x_W          261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH-F------  333 (461)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-H------
T ss_pred             EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH-H------
Confidence            9999999986     444 6778999999999998865444333221   1124555555555543221000 0      


Q ss_pred             EcCCccccCcccCCCCCccEEEccCCcccccCCccccc----cCCCcceEecccccccc----cchhhhhccCCCCEEEc
Q 045270          303 DLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGN----FMPRLRYFCAANNGLTG----IIPASLCNATTLSLLDL  374 (440)
Q Consensus       303 ~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l  374 (440)
                              .......++|++|++++|.+.+..+..+..    ..++|++|++++|.+++    ..+..+..+++|++|++
T Consensus       334 --------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l  405 (461)
T 1z7x_W          334 --------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL  405 (461)
T ss_dssp             --------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred             --------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence                    000111357777778777776433332221    25789999999999885    57778888999999999


Q ss_pred             CCCcCCCCCchhh-------hccccEEECCCCcccCCchhhh----hcCCCCcEE
Q 045270          375 SNNSFMKKSDAFL-------NCLLQTLDLNGNRLQGTVPKSI----ANCKMLEVL  418 (440)
Q Consensus       375 ~~n~i~~~~~~~~-------~~~L~~L~l~~n~~~~~~~~~~----~~l~~L~~L  418 (440)
                      ++|.+.+.....+       .+.|+.|.+.++......++.+    ...|+|+.+
T Consensus       406 ~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~  460 (461)
T 1z7x_W          406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  460 (461)
T ss_dssp             CSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence            9999876532222       2359999999888775544433    346777654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.4e-28  Score=220.83  Aligned_cols=261  Identities=20%  Similarity=0.250  Sum_probs=152.0

Q ss_pred             ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL  232 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  232 (440)
                      +.+++|++++|.+....+..+..+++|++|++++|.+. .+.+..+..+++|+.|++++|.++..+...    .++|++|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL----PSSLVEL  128 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSC----CTTCCEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCccc----cccCCEE
Confidence            34555566655555333445555666666666666554 333344556666666666666555333221    1566666


Q ss_pred             ecCCCCCCCCCC--CcccCcccEEeccCccccc--ccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcc
Q 045270          233 NLASCKLREIPN--LKNQSQLQYLYLSENQISR--EIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ  308 (440)
Q Consensus       233 ~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  308 (440)
                      ++++|.++.++.  +..+++|+.|++++|.+..  ..+..+...   +|+.|++++|.++.++... .++|++|++++|.
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~  204 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAKLTGIPKDL-PETLNELHLDHNK  204 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC---ccCEEECcCCCCCccCccc-cCCCCEEECCCCc
Confidence            666666666654  5666677777777666642  233333222   4666666666665544322 2556666666665


Q ss_pred             ccCccc---CCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCch
Q 045270          309 LRGNIH---QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDA  385 (440)
Q Consensus       309 ~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  385 (440)
                      +.+..+   ..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.++ .+|..+..+++|++|++++|+++.++..
T Consensus       205 i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          205 IQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             CCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence            554332   224567777777777763 33333333777777777777777 4566677777777777777777766443


Q ss_pred             hh--------hccccEEECCCCccc--CCchhhhhcCCCCcEEECCCCc
Q 045270          386 FL--------NCLLQTLDLNGNRLQ--GTVPKSIANCKMLEVLNLGNNQ  424 (440)
Q Consensus       386 ~~--------~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~  424 (440)
                      .+        ...|+.|++++|++.  +..+.+|..+++|+.+++++|.
T Consensus       283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             HccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            32        133777777777766  4556677777777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=5e-27  Score=214.30  Aligned_cols=218  Identities=18%  Similarity=0.185  Sum_probs=150.1

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL  101 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  101 (440)
                      ++++++++++.++. +|.  .+  .+.+++|++++|.+... .+..+.++++|++|++++|.+.+..|.++..+++|++|
T Consensus        32 ~l~~l~~~~~~l~~-lp~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPK--DL--PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCCS-CCC--SC--CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCCCccc-cCc--cC--CCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            57888999888764 443  23  37899999999998765 55579999999999999999997779999999999999


Q ss_pred             cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCC--ccccccccccCc
Q 045270          102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG--SIPVSVFELKKL  179 (440)
Q Consensus       102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L  179 (440)
                      ++++|.+. .++...   .++|++|++++|.+....+..+..        +++|++|++++|.+..  ..+..+..+++|
T Consensus       106 ~Ls~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  173 (330)
T 1xku_A          106 YLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNG--------LNQMIVVELGTNPLKSSGIENGAFQGMKKL  173 (330)
T ss_dssp             ECCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTT--------CTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             ECCCCcCC-ccChhh---cccccEEECCCCcccccCHhHhcC--------CccccEEECCCCcCCccCcChhhccCCCCc
Confidence            99999988 444322   379999999999998544444443        3688899998887752  445566667777


Q ss_pred             cEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEecc
Q 045270          180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLS  257 (440)
Q Consensus       180 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~  257 (440)
                      ++|++++|.+. .++..   ..++|+.|++++|.++...+.. +..+++|+.|++++|.++.++.  +..+++|+.|+++
T Consensus       174 ~~L~l~~n~l~-~l~~~---~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          174 SYIRIADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  248 (330)
T ss_dssp             CEEECCSSCCC-SCCSS---CCTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             CEEECCCCccc-cCCcc---ccccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence            77777777665 33321   1255666666666555443322 4445555555555555554432  4445555555555


Q ss_pred             Ccccc
Q 045270          258 ENQIS  262 (440)
Q Consensus       258 ~~~~~  262 (440)
                      +|.+.
T Consensus       249 ~N~l~  253 (330)
T 1xku_A          249 NNKLV  253 (330)
T ss_dssp             SSCCS
T ss_pred             CCcCc
Confidence            55443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=3.4e-27  Score=215.51  Aligned_cols=279  Identities=21%  Similarity=0.224  Sum_probs=230.0

Q ss_pred             ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL  232 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  232 (440)
                      ..++.++++++.+. .+|..+  .++++.|++++|.+. .++...+..+++|+.|++++|.++...+.. +..+++|++|
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L  107 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKL  107 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEE
T ss_pred             ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEE
Confidence            36899999999887 677665  379999999999987 566667899999999999999998765554 7889999999


Q ss_pred             ecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccc--cC-CccCCceeEEEcCCccc
Q 045270          233 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGF--QG-PYSIPALRFIDLSSHQL  309 (440)
Q Consensus       233 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~~  309 (440)
                      ++++|.++.+|.-. .++|++|++++|.+.+..+..+..  .++|+.|++++|.++..  .+ .....+|++|++++|++
T Consensus       108 ~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l  184 (332)
T 2ft3_A          108 YISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSG--LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL  184 (332)
T ss_dssp             ECCSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSS--CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred             ECCCCcCCccCccc-cccCCEEECCCCccCccCHhHhCC--CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence            99999999988722 289999999999998655555543  45699999999998642  22 22222999999999999


Q ss_pred             cCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-h
Q 045270          310 RGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-N  388 (440)
Q Consensus       310 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~  388 (440)
                      .+.....+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++..+..+..+++|++|++++|++..+|..+. .
T Consensus       185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l  263 (332)
T 2ft3_A          185 TGIPKDLPETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL  263 (332)
T ss_dssp             SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred             CccCccccCCCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcC
Confidence            8876667789999999999998444444444 9999999999999998888889999999999999999998877554 4


Q ss_pred             ccccEEECCCCcccCCchhhhhc------CCCCcEEECCCCccc--ccCcccccCCCCCC
Q 045270          389 CLLQTLDLNGNRLQGTVPKSIAN------CKMLEVLNLGNNQFS--DKFPCWLYDAPSLH  440 (440)
Q Consensus       389 ~~L~~L~l~~n~~~~~~~~~~~~------l~~L~~L~l~~n~~~--~~~~~~l~~~~~L~  440 (440)
                      ++|+.|++++|++++..+..|..      .+.|+.|++++|++.  +..|..+..+++|+
T Consensus       264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence            56999999999999887777765      377999999999997  66778888887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=1.7e-27  Score=215.19  Aligned_cols=246  Identities=28%  Similarity=0.365  Sum_probs=201.8

Q ss_pred             CCCCeEEecCCccCC--CccccchhcCCCCcEEEccc-CccccCCcccccccccCceecCCCCcccCccchhhhcccccc
Q 045270           47 HYLRSLNLARTSFNG--TQIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL  123 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~--~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L  123 (440)
                      .++++|+++++.+.+  . +|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+.++. .+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCC
Confidence            589999999999976  4 889999999999999995 889889999999999999999999999866655 58999999


Q ss_pred             eEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccccccccc-CccEEeccccccccccchhhHhcCC
Q 045270          124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELK-KLTSLLLSSNNLHGTVQLDKILNLG  202 (440)
Q Consensus       124 ~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~  202 (440)
                      ++|++++|.+.+.+|..+..+        ++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+ ..+..+.
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l--------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~  198 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSL--------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN  198 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGC--------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCC
T ss_pred             CEEeCCCCccCCcCChHHhcC--------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC-hHHhCCc
Confidence            999999999998889888766        6899999999999888899999988 99999999999974444 5577776


Q ss_pred             CCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCC-CCCcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270          203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI-PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN  281 (440)
Q Consensus       203 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  281 (440)
                       |+.|++++|.+....+.. +..+++|+.|++++|.++.. +.+..+++|++|++++|.+.+..|..+...  ++|+.|+
T Consensus       199 -L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~  274 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL--KFLHSLN  274 (313)
T ss_dssp             -CSEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC--TTCCEEE
T ss_pred             -ccEEECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcC--cCCCEEE
Confidence             999999999987665544 77889999999999988744 447888999999999999988888777543  3477777


Q ss_pred             ccCcccccc-cCCccCCceeEEEcCCc
Q 045270          282 LSHNLLVGF-QGPYSIPALRFIDLSSH  307 (440)
Q Consensus       282 l~~~~~~~~-~~~~~~~~L~~L~l~~~  307 (440)
                      +++|.+++. +....+++|+.+++.+|
T Consensus       275 Ls~N~l~~~ip~~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          275 VSFNNLCGEIPQGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred             CcCCcccccCCCCccccccChHHhcCC
Confidence            777776633 22233444444444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.7e-27  Score=213.02  Aligned_cols=236  Identities=17%  Similarity=0.226  Sum_probs=150.8

Q ss_pred             CCCCCCcceeeeeeCC---------CCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCC
Q 045270            4 RQSTDCCDWSGVDCDE---------AGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSL   74 (440)
Q Consensus         4 ~~~~~~~~~~~~~~~~---------~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L   74 (440)
                      ....++|.|.|+.|..         .++|++|+++++.++ .+|.  .+..+++|++|++++|.+.  .+|..++.+++|
T Consensus        55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L  129 (328)
T 4fcg_A           55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGL  129 (328)
T ss_dssp             TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTC
T ss_pred             cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCC
Confidence            4578999999999842         278999999999887 4665  6888999999999999887  378889999999


Q ss_pred             cEEEcccCccccCCcccccccccCceecCCCCcccCccchhh--------hcccccceEEEecCCccCCCCCcccccccc
Q 045270           75 TYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIR--------WEHLLNLVYAVLSDNSLNGSIPRSMFEFPI  146 (440)
Q Consensus        75 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  146 (440)
                      ++|++++|.+. .+|..+.++++|++|++++|.+.+.++...        +..+++|++|++++|.++ .+|..+..+  
T Consensus       130 ~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l--  205 (328)
T 4fcg_A          130 ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL--  205 (328)
T ss_dssp             SEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC--
T ss_pred             CEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC--
Confidence            99999999888 788889999999999999887776665421        223666666666666665 555554433  


Q ss_pred             ccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCc
Q 045270          147 FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS  226 (440)
Q Consensus       147 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  226 (440)
                            ++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+....+.. +..+
T Consensus       206 ------~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l  276 (328)
T 4fcg_A          206 ------QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLD-IHRL  276 (328)
T ss_dssp             ------TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTT-GGGC
T ss_pred             ------CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcchh-hhcC
Confidence                  45666666666655 344455555566666666555543332 23444555555555554443333222 3334


Q ss_pred             cccceeecCCCCC-CCCCC-CcccCcccEEecc
Q 045270          227 PMLELLNLASCKL-REIPN-LKNQSQLQYLYLS  257 (440)
Q Consensus       227 ~~L~~L~l~~~~l-~~l~~-~~~~~~L~~L~l~  257 (440)
                      ++|+.|++++|.+ ..+|. +..+++++.+++.
T Consensus       277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            4444444444332 23333 4444444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.4e-25  Score=219.00  Aligned_cols=265  Identities=27%  Similarity=0.312  Sum_probs=148.3

Q ss_pred             cCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccc
Q 045270           97 RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFEL  176 (440)
Q Consensus        97 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  176 (440)
                      ++++|+++++.++ .++.. +.  ++|++|++++|.++ .+|..           +++|++|++++|.+. .+|.   .+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~-l~--~~L~~L~L~~N~l~-~lp~~-----------l~~L~~L~Ls~N~l~-~lp~---~l  100 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDC-LP--AHITTLVIPDNNLT-SLPAL-----------PPELRTLEVSGNQLT-SLPV---LP  100 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSC-CC--TTCSEEEECSCCCS-CCCCC-----------CTTCCEEEECSCCCS-CCCC---CC
T ss_pred             CCcEEEecCCCcC-ccChh-hC--CCCcEEEecCCCCC-CCCCc-----------CCCCCEEEcCCCcCC-cCCC---CC
Confidence            4556666666555 33321 11  45555555555554 33331           135555555555554 3333   34


Q ss_pred             cCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEec
Q 045270          177 KKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL  256 (440)
Q Consensus       177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l  256 (440)
                      ++|++|++++|.+. .++.    .+++                         |+.|++++|.++.+|.  .+++|+.|++
T Consensus       101 ~~L~~L~Ls~N~l~-~l~~----~l~~-------------------------L~~L~L~~N~l~~lp~--~l~~L~~L~L  148 (622)
T 3g06_A          101 PGLLELSIFSNPLT-HLPA----LPSG-------------------------LCKLWIFGNQLTSLPV--LPPGLQELSV  148 (622)
T ss_dssp             TTCCEEEECSCCCC-CCCC----CCTT-------------------------CCEEECCSSCCSCCCC--CCTTCCEEEC
T ss_pred             CCCCEEECcCCcCC-CCCC----CCCC-------------------------cCEEECCCCCCCcCCC--CCCCCCEEEC
Confidence            55555555555443 2221    3344                         4455555554444443  1245555555


Q ss_pred             cCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCc
Q 045270          257 SENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPA  336 (440)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  336 (440)
                      ++|.+.+ +|..     ..+|+.|++++|.++.++  ..+++|+.|++++|.+.+ ++..+++|+.|++++|.+. .+|.
T Consensus       149 s~N~l~~-l~~~-----~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~-~l~~  218 (622)
T 3g06_A          149 SDNQLAS-LPAL-----PSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPA  218 (622)
T ss_dssp             CSSCCSC-CCCC-----CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-SCCC
T ss_pred             cCCcCCC-cCCc-----cCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCccc-ccCC
Confidence            5554432 2211     123555555555555544  234566666666665554 2233467777777777776 4443


Q ss_pred             cccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCc
Q 045270          337 DTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLE  416 (440)
Q Consensus       337 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~  416 (440)
                      .    +++|+.|++++|.+++ +|   ..+++|+.|++++|.++.++.  ...+|+.|++++|.++ .+|..+.++++|+
T Consensus       219 ~----~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~  287 (622)
T 3g06_A          219 L----PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSET  287 (622)
T ss_dssp             C----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred             C----CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence            2    5677777777777774 33   345777777777777777765  4456778888887777 5566777778888


Q ss_pred             EEECCCCcccccCccccc
Q 045270          417 VLNLGNNQFSDKFPCWLY  434 (440)
Q Consensus       417 ~L~l~~n~~~~~~~~~l~  434 (440)
                      .|++++|++++..|..+.
T Consensus       288 ~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          288 TVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             EEECCSCCCCHHHHHHHH
T ss_pred             EEEecCCCCCCcCHHHHH
Confidence            888888877776666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=4.6e-26  Score=205.66  Aligned_cols=241  Identities=22%  Similarity=0.295  Sum_probs=164.7

Q ss_pred             cceeeeeeCCC----------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCc-cccchhcCCCCcEEE
Q 045270           10 CDWSGVDCDEA----------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQ-IPSKLANISSLTYLN   78 (440)
Q Consensus        10 ~~~~~~~~~~~----------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-l~~~~~~l~~L~~L~   78 (440)
                      |.|.+++|...          .++++|++++|.+++..+.  .|..+++|++|++++|.+.... .+..+..+++|++|+
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh--HhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            67888888642          3678888888877743333  5678888888888887775321 245566778888888


Q ss_pred             cccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEE
Q 045270           79 LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTL  158 (440)
Q Consensus        79 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L  158 (440)
                      +++|.+. .+|..+..+++|++|++++|.+.+......+..+++|++|++++|.+.+..+..+..+        ++|++|
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------~~L~~L  155 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------SSLEVL  155 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC--------TTCCEE
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC--------cCCCEE
Confidence            8888777 5666777888888888888877744443457777888888888887765555555433        577788


Q ss_pred             EcCCCccCC-ccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC
Q 045270          159 DLSGNRLRG-SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC  237 (440)
Q Consensus       159 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  237 (440)
                      ++++|.+.+ ..|..+..+++|++|++++|.+. ...+..+..+++|+.|++++|.++...... +..+++|+.|++++|
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLN  233 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTS
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCC
Confidence            888777764 35666777777777777777776 444455667777777777777776554433 556667777777777


Q ss_pred             CCCCCCC--Cccc-CcccEEeccCccccc
Q 045270          238 KLREIPN--LKNQ-SQLQYLYLSENQISR  263 (440)
Q Consensus       238 ~l~~l~~--~~~~-~~L~~L~l~~~~~~~  263 (440)
                      .++..+.  +..+ ++|+.|++++|.+.+
T Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          234 HIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            7665433  5555 367777777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=4.6e-28  Score=239.31  Aligned_cols=383  Identities=15%  Similarity=0.099  Sum_probs=198.0

Q ss_pred             ccCCCCeEEecCCccCCCccccchhc-CCC-CcEEEcccCcc-cc-CCcccccccccCceecCCCCcccCcc---chhhh
Q 045270           45 SLHYLRSLNLARTSFNGTQIPSKLAN-ISS-LTYLNLSDAGF-AG-HIPLQISSMARLVALDFSFNQFSGSI---SSIRW  117 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~~~~l~~~~~~-l~~-L~~L~l~~~~~-~~-~~~~~~~~l~~L~~L~L~~~~~~~~~---~~~~~  117 (440)
                      .+++|++|++++|.+... .+..+.. ++. |++|++++|.. .. .++.....+++|++|+|++|.+.+..   .....
T Consensus       110 ~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            445555555555544322 2222322 222 55555554431 10 11111234455555555555443221   11123


Q ss_pred             cccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccc--cccch
Q 045270          118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLH--GTVQL  195 (440)
Q Consensus       118 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~  195 (440)
                      ..+++|++|++++|.+.+..+..+..+.    ..+++|++|++++|.+. .++..+..+++|++|.+......  .....
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~----~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIA----RNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHH----HHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHH----hhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHH
Confidence            4445555555555544311111111110    22345555555555544 24444445555555555432111  00011


Q ss_pred             hhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC--C-CcccCcccEEeccCcccccccCcccccc
Q 045270          196 DKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP--N-LKNQSQLQYLYLSENQISREIPNWIWRV  272 (440)
Q Consensus       196 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~  272 (440)
                      ..+..+++|+.+++++....  .....+..+++|++|++++|.++...  . +..+++|+.|+++ +.+.......+. .
T Consensus       264 ~~l~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~-~  339 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGPN--EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA-Q  339 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCTT--TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH-H
T ss_pred             HHhhccccccccCccccchh--HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH-H
Confidence            12334455555555543211  11222445667777777777654211  1 4566777777776 333221111111 1


Q ss_pred             cccceeEEEccC-----------cccccc--cC-CccCCceeEEEcCCccccCccc----CCCCCccEEEcc----CCcc
Q 045270          273 SVVGLHCLNLSH-----------NLLVGF--QG-PYSIPALRFIDLSSHQLRGNIH----QLPNNLIYIDFS----NNNF  330 (440)
Q Consensus       273 ~~~~L~~L~l~~-----------~~~~~~--~~-~~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~L~----~~~~  330 (440)
                      ..++|++|++++           +.++..  .. ...+++|++|++..+.+.+...    ..+++|+.|+++    .+.+
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            335588888873           233221  11 1237888888887776664322    225689999996    4455


Q ss_pred             cccCCcc-----ccccCCCcceEeccccc--ccccchhhhh-ccCCCCEEEcCCCcCCCCCch-h-h-hccccEEECCCC
Q 045270          331 TSSIPAD-----TGNFMPRLRYFCAANNG--LTGIIPASLC-NATTLSLLDLSNNSFMKKSDA-F-L-NCLLQTLDLNGN  399 (440)
Q Consensus       331 ~~~~~~~-----~~~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~-~-~-~~~L~~L~l~~n  399 (440)
                      + ..|..     ....+++|++|++++|.  +++.....+. .+++|++|++++|.+++.... . . .++|+.|++++|
T Consensus       420 ~-~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          420 T-DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             S-SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             c-CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence            4 22211     13338899999997653  5554444444 488999999999988764221 1 1 356999999999


Q ss_pred             cccCCch-hhhhcCCCCcEEECCCCcccccCccccc-CCCC
Q 045270          400 RLQGTVP-KSIANCKMLEVLNLGNNQFSDKFPCWLY-DAPS  438 (440)
Q Consensus       400 ~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~  438 (440)
                      .+++... ..+..+++|+.|++++|++++.....+. .+|.
T Consensus       499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~  539 (592)
T 3ogk_B          499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY  539 (592)
T ss_dssp             CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred             CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence            9876544 4456899999999999999877554443 3444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=6.2e-26  Score=209.01  Aligned_cols=274  Identities=18%  Similarity=0.201  Sum_probs=136.2

Q ss_pred             CCCCCCCcceeeeeeCCC------------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhc
Q 045270            3 WRQSTDCCDWSGVDCDEA------------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLAN   70 (440)
Q Consensus         3 w~~~~~~~~~~~~~~~~~------------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~   70 (440)
                      |..+...|.|.++ |+..            +++++|++++|.+++..+.  .+..+++|++|++++|.+... .+..+++
T Consensus        23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~   98 (353)
T 2z80_A           23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSS   98 (353)
T ss_dssp             ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred             CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCC
Confidence            4455667777665 3210            2566666666665543333  455666666666666655443 3445556


Q ss_pred             CCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCc-cCCCCCccccccccccc
Q 045270           71 ISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNS-LNGSIPRSMFEFPIFSN  149 (440)
Q Consensus        71 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~  149 (440)
                      +++|++|++++|.+.+..+..+.++++|++|++++|.+.+......+..+++|++|++++|. +....+..+..+     
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-----  173 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-----  173 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-----
T ss_pred             CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-----
Confidence            66666666666666533333355566666666666655522221345556666666666653 332223333222     


Q ss_pred             cCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccc
Q 045270          150 ASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPML  229 (440)
Q Consensus       150 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  229 (440)
                         ++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+...+..+++|+.|++++|.++...... +      
T Consensus       174 ---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l------  242 (353)
T 2z80_A          174 ---TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE-L------  242 (353)
T ss_dssp             ---CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC---------
T ss_pred             ---CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc-c------
Confidence               45666666666555444555555666666666666553 334334445556666666665554332211 0      


Q ss_pred             ceeecCCCCCCCCCCCcccCcccEEeccCccccc----ccCcccccccccceeEEEccCcccccccCC--ccCCceeEEE
Q 045270          230 ELLNLASCKLREIPNLKNQSQLQYLYLSENQISR----EIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFID  303 (440)
Q Consensus       230 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~  303 (440)
                                   +.....+.++.++++++.+.+    .+|..+.  ..++|+.|++++|.++.++..  ..+++|++|+
T Consensus       243 -------------~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~--~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~  307 (353)
T 2z80_A          243 -------------STGETNSLIKKFTFRNVKITDESLFQVMKLLN--QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW  307 (353)
T ss_dssp             -----------------CCCCCCEEEEESCBCCHHHHHHHHHHHH--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             -------------ccccccchhhccccccccccCcchhhhHHHHh--cccCCCEEECCCCCCCccCHHHHhcCCCCCEEE
Confidence                         001223334444444443332    1222222  223355566655555555442  3466666666


Q ss_pred             cCCccccC
Q 045270          304 LSSHQLRG  311 (440)
Q Consensus       304 l~~~~~~~  311 (440)
                      +++|.+..
T Consensus       308 L~~N~~~~  315 (353)
T 2z80_A          308 LHTNPWDC  315 (353)
T ss_dssp             CCSSCBCC
T ss_pred             eeCCCccC
Confidence            66665554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=9.1e-28  Score=237.18  Aligned_cols=388  Identities=14%  Similarity=0.067  Sum_probs=270.3

Q ss_pred             CceEEEeeccceeecccCCCccccc-cCC-CCeEEecCCcc-CCCccccchhcCCCCcEEEcccCccccC----Cccccc
Q 045270           21 GHVIGLDLSTESISGGIENAASLFS-LHY-LRSLNLARTSF-NGTQIPSKLANISSLTYLNLSDAGFAGH----IPLQIS   93 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~   93 (440)
                      +++++|+|+++.+++..+.  .+.. ++. |++|++++|.. ....++....++++|++|++++|.+.+.    ++..+.
T Consensus       112 ~~L~~L~L~~~~i~~~~~~--~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLD--RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHH--HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             CCCCeEEeeccEecHHHHH--HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            6799999999988765544  5555 444 99999998873 2222344456899999999999988655    334456


Q ss_pred             ccccCceecCCCCcccCcc---chhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC---C
Q 045270           94 SMARLVALDFSFNQFSGSI---SSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR---G  167 (440)
Q Consensus        94 ~l~~L~~L~L~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~---~  167 (440)
                      .+++|++|++++|.+.+..   ....+..+++|+.|++++|.+. .++..+..+        ++|++|+++.+...   .
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~--------~~L~~L~l~~~~~~~~~~  260 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAA--------ANLEEFCGGSLNEDIGMP  260 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHC--------TTCCEEEECBCCCCTTCT
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhh--------hHHHhhcccccccccchH
Confidence            7899999999999886221   1224577899999999999887 466555444        68999999754322   2


Q ss_pred             ccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC--CCCC-
Q 045270          168 SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--EIPN-  244 (440)
Q Consensus       168 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~-  244 (440)
                      .....+..+++|+.+.+.++... . .+..+..+++|+.|++++|.++.......+..+++|+.|++.++ +.  .++. 
T Consensus       261 ~~~~~l~~~~~L~~L~l~~~~~~-~-l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~  337 (592)
T 3ogk_B          261 EKYMNLVFPRKLCRLGLSYMGPN-E-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVL  337 (592)
T ss_dssp             TSSSCCCCCTTCCEEEETTCCTT-T-GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred             HHHHHhhccccccccCccccchh-H-HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHH
Confidence            33445667889999988875432 2 23456778899999999998655444333577899999999833 32  2232 


Q ss_pred             CcccCcccEEeccC-----------cccccccCcccccccccceeEEEccCcccccccCC---ccCCceeEEEcC----C
Q 045270          245 LKNQSQLQYLYLSE-----------NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP---YSIPALRFIDLS----S  306 (440)
Q Consensus       245 ~~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~----~  306 (440)
                      ...+++|++|++++           +.+++.....+. ...++|++|+++.+.++.....   ..+++|+.|++.    .
T Consensus       338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~  416 (592)
T 3ogk_B          338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA-QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE  416 (592)
T ss_dssp             HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH-HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred             HHhCCCCCEEEeecCccccccccccCccCHHHHHHHH-hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence            45678899999983           344432222211 2356799999977766543221   238899999996    4


Q ss_pred             ccccCcc--------cCCCCCccEEEccCCc--ccccCCccccccCCCcceEeccccccccc-chhhhhccCCCCEEEcC
Q 045270          307 HQLRGNI--------HQLPNNLIYIDFSNNN--FTSSIPADTGNFMPRLRYFCAANNGLTGI-IPASLCNATTLSLLDLS  375 (440)
Q Consensus       307 ~~~~~~~--------~~~~~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~  375 (440)
                      +.+.+..        ...+++|++|+++.|.  +++.....+...+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus       417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence            5555421        2236899999997654  55444444555589999999999998763 45556889999999999


Q ss_pred             CCcCCCCCc-h--hhhccccEEECCCCcccCCchhhh-hcCCCCcEEECCCC
Q 045270          376 NNSFMKKSD-A--FLNCLLQTLDLNGNRLQGTVPKSI-ANCKMLEVLNLGNN  423 (440)
Q Consensus       376 ~n~i~~~~~-~--~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n  423 (440)
                      +|.+++... .  ...++|+.|++++|++++.....+ ..+|.+....+..+
T Consensus       497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            999765421 1  124679999999999998766555 46888887777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.9e-26  Score=208.43  Aligned_cols=254  Identities=20%  Similarity=0.142  Sum_probs=131.5

Q ss_pred             cccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccc-cCCccccc-------ccccCceecCCCCcccCccchh
Q 045270           44 FSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA-GHIPLQIS-------SMARLVALDFSFNQFSGSISSI  115 (440)
Q Consensus        44 ~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~~~~~~~~~~~  115 (440)
                      ...++|++|++++|.+  . +|..+...  |++|+++++.+. ..+|..+.       ++++|++|++++|.+.+.++..
T Consensus        40 ~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            3445555555555555  2 44444432  555555555552 23333333       4555556666655555444432


Q ss_pred             h-hcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccc
Q 045270          116 R-WEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ  194 (440)
Q Consensus       116 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  194 (440)
                      . +..+++|++|++++|.+++. |..+..++.   ...++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~---~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ---WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT---TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHH---hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence            2 15555566666666555533 444433310   011455666666665554444555556666666666655432211


Q ss_pred             -hhh--HhcCCCCcEEEcCCCcccccC--CccccCCccccceeecCCCCCCCCC---CCcccCcccEEeccCcccccccC
Q 045270          195 -LDK--ILNLGNLAKLDLSYNSLAVDE--SSRNYSFSPMLELLNLASCKLREIP---NLKNQSQLQYLYLSENQISREIP  266 (440)
Q Consensus       195 -~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~  266 (440)
                       ...  +..+++|+.|++++|.++...  ....+..+++|+.|++++|.++..+   .+..+++|+.|++++|.++ .+|
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip  269 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP  269 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence             111  245556666666666554211  1111234456666666666665432   2444566666666666665 444


Q ss_pred             cccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC
Q 045270          267 NWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG  311 (440)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  311 (440)
                      ..+.    ++|++|++++|.++..+....+++|++|++++|.+.+
T Consensus       270 ~~~~----~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          270 KGLP----AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SSCC----SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred             hhcc----CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence            4432    4466666666666666555567777777777776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.1e-24  Score=207.54  Aligned_cols=229  Identities=22%  Similarity=0.221  Sum_probs=188.3

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .++++|+|++|.+++..+.  .|..+++|++|++++|.+... .+..|.++++|++|++++|.+....+..+..+++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            4789999999999887666  899999999999999988765 5678889999999999999998666666888999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      |++++|.+. .++...+..+++|++|++++|.....++....       ..+++|++|++++|.+. .+| .+..+++|+
T Consensus       152 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-------~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~  221 (452)
T 3zyi_A          152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-------EGLFNLKYLNLGMCNIK-DMP-NLTPLVGLE  221 (452)
T ss_dssp             EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTT-------TTCTTCCEEECTTSCCS-SCC-CCTTCTTCC
T ss_pred             EECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhc-------cCCCCCCEEECCCCccc-ccc-ccccccccc
Confidence            999999988 55556788999999999998654445554322       34478999999999887 444 477889999


Q ss_pred             EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccC
Q 045270          181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSE  258 (440)
Q Consensus       181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~  258 (440)
                      +|++++|.+. .+.+..+..+++|+.|++++|.+....... +..+++|+.|++++|.++.++.  +..+++|+.|++++
T Consensus       222 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          222 ELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             EEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred             EEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence            9999999987 555677889999999999999988766554 7788899999999999988876  77889999999999


Q ss_pred             cccccc
Q 045270          259 NQISRE  264 (440)
Q Consensus       259 ~~~~~~  264 (440)
                      |.+...
T Consensus       300 Np~~Cd  305 (452)
T 3zyi_A          300 NPWNCD  305 (452)
T ss_dssp             SCEECS
T ss_pred             CCcCCC
Confidence            887543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=4.3e-25  Score=199.32  Aligned_cols=56  Identities=20%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             CeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCccc
Q 045270           50 RSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFS  109 (440)
Q Consensus        50 ~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~  109 (440)
                      +.++++++.+..  +|..+.  ++|++|++++|.+....+..+.++++|++|++++|.+.
T Consensus        10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~   65 (306)
T 2z66_A           10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS   65 (306)
T ss_dssp             TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC
Confidence            345555555432  344333  45666666666665332233456666666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=205.97  Aligned_cols=178  Identities=20%  Similarity=0.179  Sum_probs=76.0

Q ss_pred             CCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcc-ccccccccccC
Q 045270           73 SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRS-MFEFPIFSNAS  151 (440)
Q Consensus        73 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~l~~~~  151 (440)
                      +|++|++++|.+.+..+..+.++++|++|++++|.+.+ +....+..+++|++|++++|.++ .+|.. +..        
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~--------  122 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKP--------  122 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTT--------
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCC--------
Confidence            44444444444443333344444444444444444442 22223444444444444444444 22222 221        


Q ss_pred             cccccEEEcCCCccCCcccc--ccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccc
Q 045270          152 SSALDTLDLSGNRLRGSIPV--SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPML  229 (440)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  229 (440)
                      +++|++|++++|.+. .++.  .+..+++|++|++++|.....++...+..+++|+.|++++|.+....+.. +..+++|
T Consensus       123 l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L  200 (353)
T 2z80_A          123 LSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNV  200 (353)
T ss_dssp             CTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEE
T ss_pred             CccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH-HhccccC
Confidence            234455555544444 2222  34445555555555542111333333444445555555554443332222 3344444


Q ss_pred             ceeecCCCCCCCCCC--CcccCcccEEeccCcccc
Q 045270          230 ELLNLASCKLREIPN--LKNQSQLQYLYLSENQIS  262 (440)
Q Consensus       230 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~  262 (440)
                      ++|++++|.++.++.  +..+++|+.|++++|.+.
T Consensus       201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             CeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            555554444444333  223444555555544443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=8.5e-24  Score=206.40  Aligned_cols=286  Identities=20%  Similarity=0.270  Sum_probs=168.7

Q ss_pred             CCCCCCCCcceeeee--------eCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCC
Q 045270            2 QWRQSTDCCDWSGVD--------CDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISS   73 (440)
Q Consensus         2 ~w~~~~~~~~~~~~~--------~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~   73 (440)
                      .|..+.++|.|.+..        |.. ..+++|+++++.++ .+|.  .+.  ++|++|++++|.+..  +|.   .+++
T Consensus        14 ~W~~~~~~~~~~~r~~~~~~~~~c~~-~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~---~l~~   82 (622)
T 3g06_A           14 AWRRAAPAEESRGRAAVVQKMRACLN-NGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA---LPPE   82 (622)
T ss_dssp             HHHHTCCGGGHHHHHHHHHHHHHHHH-HCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---CCTT
T ss_pred             HHHhcCCcchhccccccCcccccccC-CCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---cCCC
Confidence            477778889986543        221 35889999999887 4554  343  789999999988863  555   5688


Q ss_pred             CcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcc
Q 045270           74 LTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSS  153 (440)
Q Consensus        74 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~  153 (440)
                      |++|++++|.+. .+|.   .+++|++|++++|.+++ ++.    .+++|+.|++++|.++ .+|..+           +
T Consensus        83 L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~-~lp~~l-----------~  141 (622)
T 3g06_A           83 LRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLT-SLPVLP-----------P  141 (622)
T ss_dssp             CCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCS-CCCCCC-----------T
T ss_pred             CCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCC-cCCCCC-----------C
Confidence            999999998887 5664   66888888888888773 332    4577777888877776 455432           5


Q ss_pred             cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceee
Q 045270          154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN  233 (440)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  233 (440)
                      +|++|++++|.+. .+|.   .+++|+.|.+++|.+. .++    ..+++|+.|++++|.++....     .+++|+.|+
T Consensus       142 ~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~  207 (622)
T 3g06_A          142 GLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASLPT-----LPSELYKLW  207 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEE
T ss_pred             CCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCCCCC-----ccchhhEEE
Confidence            6777777777766 3332   2356666666666665 233    234555666666655543221     124455555


Q ss_pred             cCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcc
Q 045270          234 LASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNI  313 (440)
Q Consensus       234 l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  313 (440)
                      +++|.++.+|.  .+++|+.|++++|.++                          .++  ..+++|+.|++++|.+....
T Consensus       208 L~~N~l~~l~~--~~~~L~~L~Ls~N~L~--------------------------~lp--~~l~~L~~L~Ls~N~L~~lp  257 (622)
T 3g06_A          208 AYNNRLTSLPA--LPSGLKELIVSGNRLT--------------------------SLP--VLPSELKELMVSGNRLTSLP  257 (622)
T ss_dssp             CCSSCCSSCCC--CCTTCCEEECCSSCCS--------------------------CCC--CCCTTCCEEECCSSCCSCCC
T ss_pred             CcCCcccccCC--CCCCCCEEEccCCccC--------------------------cCC--CCCCcCcEEECCCCCCCcCC
Confidence            55555554443  1244444444444443                          222  12233444444444333211


Q ss_pred             cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhcc
Q 045270          314 HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNA  366 (440)
Q Consensus       314 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  366 (440)
                      . .+++|+.|++++|.++ .+|..+.. +++|+.|++++|.+.+..+..+..+
T Consensus       258 ~-~~~~L~~L~Ls~N~L~-~lp~~l~~-l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          258 M-LPSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             C-CCTTCCEEECCSSCCC-SCCGGGGG-SCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             c-ccccCcEEeCCCCCCC-cCCHHHhh-ccccCEEEecCCCCCCcCHHHHHhc
Confidence            1 3345555666666555 55554443 5666666666666655555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.1e-24  Score=204.71  Aligned_cols=228  Identities=24%  Similarity=0.229  Sum_probs=177.6

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .+++.|+|++|.+++..+.  .|..+++|++|++++|.+... .+..|.++++|++|++++|.+....+..|..+++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence            4688889998888876655  788888999999988888654 5567888888999999888888555567888888999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      |++++|.+. .++...+..+++|++|++++|.....++...+       ..+++|++|++++|.+. .+| .+..+++|+
T Consensus       141 L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-------~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~  210 (440)
T 3zyj_A          141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-------EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLD  210 (440)
T ss_dssp             EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTT-------TTCSSCCEEECTTSCCS-SCC-CCTTCSSCC
T ss_pred             eeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchh-------hcccccCeecCCCCcCc-ccc-ccCCCcccC
Confidence            999988887 55555688888899998888554434444322       34478888899888887 455 477788888


Q ss_pred             EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccC
Q 045270          181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSE  258 (440)
Q Consensus       181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~  258 (440)
                      +|++++|.+. .+....+..+++|+.|++++|.++...... +..+++|+.|++++|.++.++.  +..+++|+.|++++
T Consensus       211 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          211 ELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             EEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTS-STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             EEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhh-hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence            8888888887 555567888888888888888887666554 6778888888888888887776  77788888888888


Q ss_pred             ccccc
Q 045270          259 NQISR  263 (440)
Q Consensus       259 ~~~~~  263 (440)
                      |.+..
T Consensus       289 Np~~C  293 (440)
T 3zyj_A          289 NPWNC  293 (440)
T ss_dssp             SCEEC
T ss_pred             CCccC
Confidence            87753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.9e-25  Score=198.24  Aligned_cols=225  Identities=22%  Similarity=0.187  Sum_probs=172.9

Q ss_pred             EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270           24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF  103 (440)
Q Consensus        24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  103 (440)
                      ++++.+++.++. +|.    ...++|++|+++++.+... .+..+..+++|++|++++|.+.+..|.++..+++|++|++
T Consensus        14 ~~~~c~~~~l~~-ip~----~~~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPV----GIPAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSS-CCT----TCCTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCccc-CCc----CCCCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            567777776653 332    2346888888888888654 4566788888888888888888666778888888888888


Q ss_pred             CCCc-ccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEE
Q 045270          104 SFNQ-FSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSL  182 (440)
Q Consensus       104 ~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  182 (440)
                      ++|. +. .+....+..+++|++|++++|.+.+..+..+..+        ++|++|++++|.+....+..+..+++|++|
T Consensus        88 ~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           88 SDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--------AALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             CSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------TTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC--------cCCCEEECCCCcccccCHhHhccCCCccEE
Confidence            8887 55 5544567888888888888888875556555444        688888988888875555567788889999


Q ss_pred             eccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcc
Q 045270          183 LLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ  260 (440)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~  260 (440)
                      ++++|.+. .++...+..+++|+.|++++|.+....+.. +..+++|+.|++++|.++.++.  +..+++|+.|++++|.
T Consensus       159 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          159 FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             ECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            99888887 556566788888999999998887665544 6778889999999998888775  7888899999999988


Q ss_pred             ccccc
Q 045270          261 ISREI  265 (440)
Q Consensus       261 ~~~~~  265 (440)
                      +....
T Consensus       237 ~~c~~  241 (285)
T 1ozn_A          237 WVCDC  241 (285)
T ss_dssp             EECSG
T ss_pred             ccCCC
Confidence            76543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=5.6e-24  Score=201.84  Aligned_cols=250  Identities=22%  Similarity=0.220  Sum_probs=142.7

Q ss_pred             CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      ..+.++.++..+..  +|..+.  ++++.|++++|.+....+..|.++++|++|+|++|.+. .++...+..+++|++|+
T Consensus        44 ~~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLRE--VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCSS--CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcCc--CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            35566666665533  565554  67777777777777666667777777777777777776 34444566666777777


Q ss_pred             ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270          128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL  207 (440)
Q Consensus       128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  207 (440)
                      +++|.++...+..+..        +++|++|++++|.+....+..|..+++|++|+++++.....++...          
T Consensus       119 L~~n~l~~~~~~~~~~--------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~----------  180 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVY--------LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA----------  180 (440)
T ss_dssp             CCSSCCSSCCTTTSCS--------CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT----------
T ss_pred             CCCCcCCeeCHhHhhc--------cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch----------
Confidence            7666666322223322        2456666666666553333344455555555555433222333333          


Q ss_pred             EcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCccc
Q 045270          208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLL  287 (440)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  287 (440)
                                     +..+++|+.|++++|.++.+|.+..+++|+.|++++|.+.+..+..+...  ++|++|++++|.+
T Consensus       181 ---------------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~l  243 (440)
T 3zyj_A          181 ---------------FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL--MHLQKLWMIQSQI  243 (440)
T ss_dssp             ---------------TTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTCCC
T ss_pred             ---------------hhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccC--ccCCEEECCCCce
Confidence                           44455566666666666666656666666666666666655444444221  2244444433333


Q ss_pred             ccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccc
Q 045270          288 VGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG  357 (440)
Q Consensus       288 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  357 (440)
                      ....+.                   ....+++|+.|+|++|.++ .++...+..+++|+.|++++|.+..
T Consensus       244 ~~~~~~-------------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          244 QVIERN-------------------AFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CEECTT-------------------SSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             eEEChh-------------------hhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccC
Confidence            322111                   1112346777777777777 5555555557888888888887754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=6.5e-24  Score=202.12  Aligned_cols=250  Identities=19%  Similarity=0.182  Sum_probs=140.6

Q ss_pred             CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      ..+.++.++..+..  +|..+.  +++++|++++|.+.+..+..|.++++|++|+|++|.+. .++...+..+++|++|+
T Consensus        55 ~~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE--VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCcEEEECCCCcCc--cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence            34566666655533  555444  57777777777777666667777777777777777766 33333566666666666


Q ss_pred             ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270          128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL  207 (440)
Q Consensus       128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  207 (440)
                      +++|.++...+..+..        +++|++|++++|.+....+..|..+++|++|+++++...+.++...          
T Consensus       130 L~~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~----------  191 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEY--------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA----------  191 (452)
T ss_dssp             CCSSCCSBCCTTTSSS--------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT----------
T ss_pred             CCCCcCCccChhhhcc--------cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh----------
Confidence            6666665322222322        2456666666665553333344455555555555433222333223          


Q ss_pred             EcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCccc
Q 045270          208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLL  287 (440)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  287 (440)
                                     +..+++|+.|++++|.++.+|.+..+++|+.|++++|.+.+..+..+...  ++|+.|++++|.+
T Consensus       192 ---------------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~l  254 (452)
T 3zyi_A          192 ---------------FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLWVMNSQV  254 (452)
T ss_dssp             ---------------TTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTC--TTCCEEECTTSCC
T ss_pred             ---------------ccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCc--cCCCEEEeCCCcC
Confidence                           44555566666666666666666666677777777776665444444322  1244444443333


Q ss_pred             ccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccc
Q 045270          288 VGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG  357 (440)
Q Consensus       288 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  357 (440)
                      ....+.                   ....+++|+.|+|++|.++ .++...+..+++|+.|++++|.+..
T Consensus       255 ~~~~~~-------------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          255 SLIERN-------------------AFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CEECTT-------------------TTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ceECHH-------------------HhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcCC
Confidence            322111                   0112346777777777776 5555555557888888888887754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=4.7e-24  Score=188.64  Aligned_cols=217  Identities=21%  Similarity=0.265  Sum_probs=146.1

Q ss_pred             CCCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccc
Q 045270            6 STDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA   85 (440)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~   85 (440)
                      +++.|.|.++.|.....+++++++++.++. +|.  .+.  +++++|++++|.+... .+..|.++++|++|++++|.+.
T Consensus         1 ~~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~   74 (270)
T 2o6q_A            1 NEALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ   74 (270)
T ss_dssp             CCCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred             CCccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence            368999999999776778899999998875 444  332  6899999999988764 4557888999999999999988


Q ss_pred             cCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCcc
Q 045270           86 GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL  165 (440)
Q Consensus        86 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~  165 (440)
                      ...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+        ++|++|++++|.+
T Consensus        75 ~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------~~L~~L~Ls~n~l  145 (270)
T 2o6q_A           75 TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL--------TKLTYLSLGYNEL  145 (270)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC--------TTCCEEECCSSCC
T ss_pred             eeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcC--------cCCCEEECCCCcC
Confidence            555555688899999999998887 4444456777777777777777764444334333        5677777777666


Q ss_pred             CCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-
Q 045270          166 RGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-  244 (440)
Q Consensus       166 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-  244 (440)
                      ....+..+..+++|++|++++|.+. .++...+..+                         ++|+.|++++|.++.++. 
T Consensus       146 ~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l-------------------------~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          146 QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL-------------------------TELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTC-------------------------TTCCEEECCSSCCSCCCTT
T ss_pred             CccCHhHccCCcccceeEecCCcCc-EeChhHhccC-------------------------CCcCEEECCCCcCCcCCHH
Confidence            6333333555566666666665554 3333334444                         445555555555544443 


Q ss_pred             -CcccCcccEEeccCccccc
Q 045270          245 -LKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       245 -~~~~~~L~~L~l~~~~~~~  263 (440)
                       +..+++|+.|++++|.+..
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCC
T ss_pred             HhccccCCCEEEecCCCeeC
Confidence             4555666666666665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.1e-23  Score=191.21  Aligned_cols=233  Identities=20%  Similarity=0.237  Sum_probs=191.1

Q ss_pred             ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270           45 SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV  124 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~  124 (440)
                      ..++++.|+++++.+.  .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .++. .+..+++|+
T Consensus        79 ~~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGCTTCC
T ss_pred             cccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcCcCCC
Confidence            4589999999999996  37888999999999999999999 89999999999999999999998 5554 589999999


Q ss_pred             EEEecCCccCCCCCcccccccc-ccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCC
Q 045270          125 YAVLSDNSLNGSIPRSMFEFPI-FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN  203 (440)
Q Consensus       125 ~L~l~~~~~~~~~~~~~~~l~~-l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  203 (440)
                      +|++++|...+.+|..+..... -.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .++. .+..+++
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~-~l~~l~~  230 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP-AIHHLPK  230 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCG-GGGGCTT
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCch-hhccCCC
Confidence            9999999888888887754100 00023478999999999998 78888999999999999999987 4443 4789999


Q ss_pred             CcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC-CcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270          204 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN  281 (440)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  281 (440)
                      |+.|++++|.+....+.. +..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+.+.+|..+.....  ++.+.
T Consensus       231 L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~--L~~l~  307 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA--NCIIL  307 (328)
T ss_dssp             CCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT--TCEEE
T ss_pred             CCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC--ceEEe
Confidence            999999998887665554 778889999999998654 5665 888999999999999988888888765443  77776


Q ss_pred             ccCcccc
Q 045270          282 LSHNLLV  288 (440)
Q Consensus       282 l~~~~~~  288 (440)
                      +..+.+.
T Consensus       308 l~~~~~~  314 (328)
T 4fcg_A          308 VPPHLQA  314 (328)
T ss_dssp             CCGGGSC
T ss_pred             CCHHHHH
Confidence            6655443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=5.2e-27  Score=231.92  Aligned_cols=399  Identities=15%  Similarity=0.097  Sum_probs=240.3

Q ss_pred             CceEEEeeccceeecccC---C----------CccccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEcccC-ccc
Q 045270           21 GHVIGLDLSTESISGGIE---N----------AASLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNLSDA-GFA   85 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~---~----------~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l~~~-~~~   85 (440)
                      +++++|+++++.......   .          ......+++|++|+++++.+... .+..+. .+++|++|++++| .+.
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCC
Confidence            789999999976432221   1          01235788999999999887655 444554 6899999999988 444


Q ss_pred             cC-CcccccccccCceecCCCCcccCccch---hhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcC
Q 045270           86 GH-IPLQISSMARLVALDFSFNQFSGSISS---IRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLS  161 (440)
Q Consensus        86 ~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~  161 (440)
                      .. ++..+.++++|++|++++|.+.+....   .....+++|++|++++|. .......+..+.    ..+++|++|+++
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~----~~~~~L~~L~L~  219 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLV----TRCPNLKSLKLN  219 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHH----HHCTTCCEEECC
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHH----HhCCCCcEEecC
Confidence            22 444455889999999999987643322   123367799999999886 111112222221    235789999999


Q ss_pred             CCccCCccccccccccCccEEeccccc-------cccccchhhHhcCCCCcEE-EcCCCcccccCCccccCCccccceee
Q 045270          162 GNRLRGSIPVSVFELKKLTSLLLSSNN-------LHGTVQLDKILNLGNLAKL-DLSYNSLAVDESSRNYSFSPMLELLN  233 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~  233 (440)
                      +|.....++..+..+++|++|.+..+.       +. ... ..+.++++|+.+ .+.+....  ........+++|+.|+
T Consensus       220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~-~~l~~~~~L~~Ls~~~~~~~~--~l~~~~~~~~~L~~L~  295 (594)
T 2p1m_B          220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLS-VALSGCKELRCLSGFWDAVPA--YLPAVYSVCSRLTTLN  295 (594)
T ss_dssp             TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHH-HHHHTCTTCCEEECCBTCCGG--GGGGGHHHHTTCCEEE
T ss_pred             CCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHH-HHHhcCCCcccccCCcccchh--hHHHHHHhhCCCCEEE
Confidence            883222466677788999999865543       22 122 256778888887 33332211  1111133567788888


Q ss_pred             cCCCCCCC--CCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCc---------cccccc--CC-ccCCc
Q 045270          234 LASCKLRE--IPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN---------LLVGFQ--GP-YSIPA  298 (440)
Q Consensus       234 l~~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------~~~~~~--~~-~~~~~  298 (440)
                      +++|.++.  +.. +..+++|+.|++++| +.......+. ...++|++|++..+         .++...  .. ..+++
T Consensus       296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~-~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~  373 (594)
T 2p1m_B          296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA-STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK  373 (594)
T ss_dssp             CTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH-HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH-HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence            88887552  222 456788888888877 3322111111 12455888877432         222111  00 13677


Q ss_pred             eeEEEcCCccccCccc----CCCCCccEEEcc--C----CcccccCCcc-----ccccCCCcceEecccccccccchhhh
Q 045270          299 LRFIDLSSHQLRGNIH----QLPNNLIYIDFS--N----NNFTSSIPAD-----TGNFMPRLRYFCAANNGLTGIIPASL  363 (440)
Q Consensus       299 L~~L~l~~~~~~~~~~----~~~~~L~~L~L~--~----~~~~~~~~~~-----~~~~~~~L~~L~l~~~~l~~~~~~~~  363 (440)
                      |++|.+..+.+.+...    ..+++|+.|+++  +    +.++ ..|..     +...+++|+.|++++ .+++..+..+
T Consensus       374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l  451 (594)
T 2p1m_B          374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI  451 (594)
T ss_dssp             CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred             HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence            8888776666654221    225678888887  3    3333 22211     123367888888866 5554444455


Q ss_pred             hc-cCCCCEEEcCCCcCCCCCchh---hhccccEEECCCCcccCCchh-hhhcCCCCcEEECCCCcccccCcccc
Q 045270          364 CN-ATTLSLLDLSNNSFMKKSDAF---LNCLLQTLDLNGNRLQGTVPK-SIANCKMLEVLNLGNNQFSDKFPCWL  433 (440)
Q Consensus       364 ~~-~~~L~~L~l~~n~i~~~~~~~---~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l  433 (440)
                      .. +++|++|++++|.+++.....   ..++|++|++++|.+++..+. .+..+++|+.|++++|+++......+
T Consensus       452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  526 (594)
T 2p1m_B          452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLL  526 (594)
T ss_dssp             HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHH
T ss_pred             HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHH
Confidence            44 778888888888775542211   135688888888887654443 34457888888888887765444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=2.1e-23  Score=186.15  Aligned_cols=206  Identities=22%  Similarity=0.221  Sum_probs=121.7

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCc-cccCCcccccccccCc
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG-FAGHIPLQISSMARLV   99 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~   99 (440)
                      +++++|+++++.+++..+.  .|..+++|++|++++|.+... .+..+..+++|++|++++|. +....|..+..+++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAA--SFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCceEEEeeCCcCCccCHH--HcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            4566666666666654444  566666666666666666443 35556666666666666665 5544455666666666


Q ss_pred             eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270          100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL  179 (440)
Q Consensus       100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  179 (440)
                      +|++++|.+.+ ++...+..+++|++|++++|.+....+..+..+        ++|++|++++|.+....+..+..+++|
T Consensus       109 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          109 TLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDL--------GNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             EEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------TTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             EEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhccC--------CCccEEECCCCcccccCHHHhcCcccc
Confidence            66666666653 323345666666666666666653333333322        566666666666653333345666666


Q ss_pred             cEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC
Q 045270          180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR  240 (440)
Q Consensus       180 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  240 (440)
                      ++|++++|.+. ...+..+..+++|+.|++++|.++...... +..+++|+.|++++|.+.
T Consensus       180 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          180 DRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHH-HTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCCHHH-cccCcccCEEeccCCCcc
Confidence            66666666665 333345566666666666666665443322 455666666666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.6e-26  Score=228.41  Aligned_cols=414  Identities=15%  Similarity=0.054  Sum_probs=276.8

Q ss_pred             ceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCC-c-c------------ccchhcCCCCcE
Q 045270           11 DWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGT-Q-I------------PSKLANISSLTY   76 (440)
Q Consensus        11 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~-l------------~~~~~~l~~L~~   76 (440)
                      .|.++..   ...+.++++.+...  .+ ...+..+++|++|+++++..... . .            ......+++|++
T Consensus        36 ~W~~~~~---~~~~~l~~~~~~~~--~~-~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~  109 (594)
T 2p1m_B           36 SWYEIER---WCRRKVFIGNCYAV--SP-ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEE  109 (594)
T ss_dssp             HHHHHHH---HHCCEEEESSTTSS--CH-HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred             HHHHhhh---hhceEEeecccccc--CH-HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCe
Confidence            4777622   23356666654322  11 12577899999999998763211 0 1            122356899999


Q ss_pred             EEcccCccccCCccccc-ccccCceecCCCC-cccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCccc
Q 045270           77 LNLSDAGFAGHIPLQIS-SMARLVALDFSFN-QFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSA  154 (440)
Q Consensus        77 L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~  154 (440)
                      |+++++.+.+..+..+. .+++|++|++++| .+........+..+++|++|++++|.+++..+..+..++    ..+++
T Consensus       110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~----~~~~~  185 (594)
T 2p1m_B          110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP----DTYTS  185 (594)
T ss_dssp             EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC----TTCCC
T ss_pred             EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh----hcCCc
Confidence            99999988766666665 6899999999999 444322333456899999999999998766666665554    46789


Q ss_pred             ccEEEcCCCc--cCC-ccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcc-------cccCCccccC
Q 045270          155 LDTLDLSGNR--LRG-SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL-------AVDESSRNYS  224 (440)
Q Consensus       155 L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~  224 (440)
                      |++|+++++.  +.. .+...+..+++|++|++.+|..... ....+..+++|+.|++..+..       .....  .+.
T Consensus       186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~--~l~  262 (594)
T 2p1m_B          186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV--ALS  262 (594)
T ss_dssp             CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH--HHH
T ss_pred             CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHH--HHh
Confidence            9999999886  221 1222234579999999999843223 345677899999999766532       11111  256


Q ss_pred             Ccccccee-ecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccc--cCC-ccCCce
Q 045270          225 FSPMLELL-NLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGF--QGP-YSIPAL  299 (440)
Q Consensus       225 ~~~~L~~L-~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~-~~~~~L  299 (440)
                      .+++|+.+ .+.+.....++. +..+++|++|++++|.+.+.....+. ...++|++|++++| +...  ... ..+++|
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~-~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L  340 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL-CQCPKLQRLWVLDY-IEDAGLEVLASTCKDL  340 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH-TTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH-hcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence            77888888 444444344554 44789999999999986543322211 24467999999988 3211  111 248999


Q ss_pred             eEEEcCC---------ccccCcc----cCCCCCccEEEccCCcccccCCccccccCCCcceEecc--c----cccccc--
Q 045270          300 RFIDLSS---------HQLRGNI----HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAA--N----NGLTGI--  358 (440)
Q Consensus       300 ~~L~l~~---------~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~l~~~--  358 (440)
                      ++|++.+         +.+.+..    ...+++|+.|.+..+.+++.....+...+++|+.|++.  +    +.+++.  
T Consensus       341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~  420 (594)
T 2p1m_B          341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL  420 (594)
T ss_dssp             CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred             CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence            9999843         3333211    12367999999888888754444444458999999999  3    455522  


Q ss_pred             ---chhhhhccCCCCEEEcCCCcCCCCCchhh---hccccEEECCCCcccCCchhhh-hcCCCCcEEECCCCcccccCcc
Q 045270          359 ---IPASLCNATTLSLLDLSNNSFMKKSDAFL---NCLLQTLDLNGNRLQGTVPKSI-ANCKMLEVLNLGNNQFSDKFPC  431 (440)
Q Consensus       359 ---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~  431 (440)
                         .+..+..+++|++|++++ .+++......   .++|+.|++++|.+++..+..+ ..+++|+.|++++|++++..+.
T Consensus       421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~  499 (594)
T 2p1m_B          421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL  499 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred             hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence               223367889999999977 5554422111   4569999999999987766666 7799999999999999766544


Q ss_pred             -cccCCCCCC
Q 045270          432 -WLYDAPSLH  440 (440)
Q Consensus       432 -~l~~~~~L~  440 (440)
                       .+..+++|+
T Consensus       500 ~~~~~l~~L~  509 (594)
T 2p1m_B          500 ANASKLETMR  509 (594)
T ss_dssp             HTGGGGGGSS
T ss_pred             HHHHhCCCCC
Confidence             333355543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=6.8e-25  Score=198.69  Aligned_cols=255  Identities=17%  Similarity=0.198  Sum_probs=194.0

Q ss_pred             ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL  232 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  232 (440)
                      ..++..+++.+.+.......+..+++|++|++++|.+. ...+..+..+++|+.|++++|.++...+   +..+++|+.|
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L   85 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTL   85 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEE
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEE
Confidence            34666777777665334444556789999999999997 5666778999999999999999875543   6788999999


Q ss_pred             ecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCcccc
Q 045270          233 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLR  310 (440)
Q Consensus       233 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~  310 (440)
                      ++++|.++.++   ..++|+.|++++|.+.+..+..     .++|++|++++|.++...+.  ..+++|++|++++|.+.
T Consensus        86 ~Ls~n~l~~l~---~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           86 DLNNNYVQELL---VGPSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             ECCSSEEEEEE---ECTTCCEEECCSSCCSEEEECC-----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             ECcCCcccccc---CCCCcCEEECCCCccCCcCccc-----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            99999888765   3489999999999887654433     34599999999998887653  45788999999888877


Q ss_pred             CcccC----CCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchh
Q 045270          311 GNIHQ----LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAF  386 (440)
Q Consensus       311 ~~~~~----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  386 (440)
                      +..+.    .+++|++|++++|.+. .++....  +++|+.|++++|.+++. +..+..+++|++|++++|.++.++..+
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~--l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~  233 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKAL  233 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCC-EEECCCC--CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred             cccHHHHhhccCcCCEEECCCCcCc-ccccccc--cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHh
Confidence            64322    3578888888888887 3333322  78888888888888854 444888888888888888888776554


Q ss_pred             h-hccccEEECCCCccc-CCchhhhhcCCCCcEEECCCC
Q 045270          387 L-NCLLQTLDLNGNRLQ-GTVPKSIANCKMLEVLNLGNN  423 (440)
Q Consensus       387 ~-~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n  423 (440)
                      . .++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            3 356888888888888 566777888888888888744

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.1e-24  Score=196.80  Aligned_cols=247  Identities=23%  Similarity=0.272  Sum_probs=171.7

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchh-------cCCCCcEEEcccCccccCCcccc-
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLA-------NISSLTYLNLSDAGFAGHIPLQI-   92 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~-   92 (440)
                      ++++++++++|.+  .+|.  .+...  |+.|+++++.+....++..+.       .+++|++|++++|.+.+.+|..+ 
T Consensus        43 ~~L~~l~l~~n~l--~~p~--~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLG--QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EECTTHHHHCCTT--CCCH--HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCceeEeeccccc--ccHH--HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            4566777777776  3443  34444  777888887775444565554       67888888888888877777765 


Q ss_pred             -cccccCceecCCCCcccCccchhhhccc-----ccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC
Q 045270           93 -SSMARLVALDFSFNQFSGSISSIRWEHL-----LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR  166 (440)
Q Consensus        93 -~~l~~L~~L~L~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~  166 (440)
                       ..+++|++|++++|.+.+. + ..+..+     ++|++|++++|.+.+..|..+..+        ++|++|++++|.+.
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF--------PALSTLDLSDNPEL  186 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC--------SSCCEEECCSCTTC
T ss_pred             HhcCCCccEEEccCCCCcch-h-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC--------CCCCEEECCCCCcC
Confidence             7788888888888888755 3 245555     788888888888876555666544        67888888888765


Q ss_pred             Cc--ccccc--ccccCccEEecccccccc--ccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC
Q 045270          167 GS--IPVSV--FELKKLTSLLLSSNNLHG--TVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR  240 (440)
Q Consensus       167 ~~--~~~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  240 (440)
                      +.  .+..+  ..+++|++|++++|.+.+  ......+..+++|+.|++++|.++...+...+..+++|+.|++++|.++
T Consensus       187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            33  22233  677888888888887762  2223445577888888888888776554333556778888888888888


Q ss_pred             CCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCccccc
Q 045270          241 EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG  289 (440)
Q Consensus       241 ~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  289 (440)
                      .+|. +.  ++|+.|++++|++++. |. +.  ..++|++|++++|.+++
T Consensus       267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~--~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PD--ELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCSSCC--SEEEEEECCSSCCCSC-CC-TT--TSCEEEEEECTTCTTTC
T ss_pred             hhhhhcc--CCceEEECCCCCCCCC-hh-Hh--hCCCCCEEeccCCCCCC
Confidence            7776 33  7888888888888654 44 33  34558888888887754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=9.4e-24  Score=191.20  Aligned_cols=239  Identities=16%  Similarity=0.145  Sum_probs=170.3

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL  101 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  101 (440)
                      +++..+++.+.+......  .+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             ceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            455566666666543333  566778999999999988765 56788899999999999998875443  8889999999


Q ss_pred             cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccE
Q 045270          102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS  181 (440)
Q Consensus       102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  181 (440)
                      ++++|.+.+      +...++|++|++++|.+.+..+..           +++|++|++++|.+....+..+..+++|++
T Consensus        86 ~Ls~n~l~~------l~~~~~L~~L~l~~n~l~~~~~~~-----------~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  148 (317)
T 3o53_A           86 DLNNNYVQE------LLVGPSIETLHAANNNISRVSCSR-----------GQGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (317)
T ss_dssp             ECCSSEEEE------EEECTTCCEEECCSSCCSEEEECC-----------CSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred             ECcCCcccc------ccCCCCcCEEECCCCccCCcCccc-----------cCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence            999998773      224488999999999887433322           267889999999888666667778888999


Q ss_pred             EeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcc
Q 045270          182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQ  260 (440)
Q Consensus       182 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~  260 (440)
                      |++++|.+.+..+...+..+++|+.|++++|.++....   ...+++|+.|++++|.++.++. +..+++|+.|++++|.
T Consensus       149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc---ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc
Confidence            99988888743333333467888888888888765532   2347778888888888877755 7777788888888877


Q ss_pred             cccccCcccccccccceeEEEccCcccc
Q 045270          261 ISREIPNWIWRVSVVGLHCLNLSHNLLV  288 (440)
Q Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~  288 (440)
                      +.+ +|..+..  .++|+.|++++|.+.
T Consensus       226 l~~-l~~~~~~--l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          226 LVL-IEKALRF--SQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCE-ECTTCCC--CTTCCEEECTTCCCB
T ss_pred             ccc-hhhHhhc--CCCCCEEEccCCCcc
Confidence            763 4443322  233555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.7e-23  Score=200.21  Aligned_cols=235  Identities=22%  Similarity=0.243  Sum_probs=138.0

Q ss_pred             ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL  232 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  232 (440)
                      ++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+   +..+++|+.|++++|.++...      ..++|+.|
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~------~~~~L~~L  104 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL------VGPSIETL  104 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE------ECTTCCEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC------CCCCcCEE
Confidence            456666666666654445556666666666666666553222   555666666666666554322      12456666


Q ss_pred             ecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCc
Q 045270          233 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN  312 (440)
Q Consensus       233 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  312 (440)
                      ++++|.++.++. ..+++|+.|++++|.+++..+..+..  .++|+.|++++|.++...+.                  .
T Consensus       105 ~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~------------------~  163 (487)
T 3oja_A          105 HAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNEIDTVNFA------------------E  163 (487)
T ss_dssp             ECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGG--GSSEEEEECTTSCCCEEEGG------------------G
T ss_pred             ECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcC--CCCCCEEECCCCCCCCcChH------------------H
Confidence            666666655543 23455666666666655444433322  22244444443333322111                  0


Q ss_pred             ccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hccc
Q 045270          313 IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NCLL  391 (440)
Q Consensus       313 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L  391 (440)
                      +...+++|+.|+|++|.+.+. +...  .+++|+.|++++|.+++..+ .+..+++|+.|++++|.+..+|..+. .++|
T Consensus       164 l~~~l~~L~~L~Ls~N~l~~~-~~~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L  239 (487)
T 3oja_A          164 LAASSDTLEHLNLQYNFIYDV-KGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNL  239 (487)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE-ECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             HhhhCCcccEEecCCCccccc-cccc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence            011234667777777776633 3222  27888888888888886444 47788888888888888887765543 3568


Q ss_pred             cEEECCCCccc-CCchhhhhcCCCCcEEECC
Q 045270          392 QTLDLNGNRLQ-GTVPKSIANCKMLEVLNLG  421 (440)
Q Consensus       392 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~  421 (440)
                      +.|++++|++. +..|..+..++.|+.++++
T Consensus       240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            88888888887 4556667777777777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=2.4e-22  Score=192.29  Aligned_cols=218  Identities=17%  Similarity=0.163  Sum_probs=145.9

Q ss_pred             ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270           45 SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV  124 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~  124 (440)
                      .+++|++|++++|.+... .|..|..+++|++|++++|.+.+..|  +..+++|++|++++|.+.+.      ...++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------~~~~~L~  102 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------LVGPSIE  102 (487)
T ss_dssp             TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE------EECTTCC
T ss_pred             cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC------CCCCCcC
Confidence            445788888888877664 56677778888888888887775444  77788888888888877632      2237788


Q ss_pred             EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCC
Q 045270          125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL  204 (440)
Q Consensus       125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  204 (440)
                      +|++++|.+.+..+..           +++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+......+++|
T Consensus       103 ~L~L~~N~l~~~~~~~-----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A          103 TLHAANNNISRVSCSR-----------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (487)
T ss_dssp             EEECCSSCCCCEEECC-----------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             EEECcCCcCCCCCccc-----------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence            8888888776433322           25678888888887766666777778888888888877643333323367778


Q ss_pred             cEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEcc
Q 045270          205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS  283 (440)
Q Consensus       205 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  283 (440)
                      +.|++++|.++....   ...+++|+.|++++|.++.+|. +..+++|+.|++++|.+.+ +|..+..  .++|+.++++
T Consensus       172 ~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~--l~~L~~L~l~  245 (487)
T 3oja_A          172 EHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRF--SQNLEHFDLR  245 (487)
T ss_dssp             CEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCC--CTTCCEEECT
T ss_pred             cEEecCCCccccccc---cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhcc--CCCCCEEEcC
Confidence            888888777765532   2346777777777777776655 6677777777777777663 4443322  2335556665


Q ss_pred             Ccccc
Q 045270          284 HNLLV  288 (440)
Q Consensus       284 ~~~~~  288 (440)
                      +|.+.
T Consensus       246 ~N~l~  250 (487)
T 3oja_A          246 GNGFH  250 (487)
T ss_dssp             TCCBC
T ss_pred             CCCCc
Confidence            55554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=2.1e-21  Score=172.27  Aligned_cols=207  Identities=20%  Similarity=0.252  Sum_probs=144.2

Q ss_pred             CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270           47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA  126 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L  126 (440)
                      ++|++|++++|.+... .+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence            4677777777776543 3446677777777777777776555556777777777777777776 3333356777777777


Q ss_pred             EecCCccCCCCCccccccccccccCcccccEEEcCCCccCC-ccccccccccCccEEeccccccccccchhhHhcCCCCc
Q 045270          127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG-SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA  205 (440)
Q Consensus       127 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  205 (440)
                      ++++|.+....+..+..        +++|++|++++|.+.. .+|..+..+++|++|++++|.+. .++...+..+.+|+
T Consensus       106 ~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~  176 (276)
T 2z62_A          106 VAVETNLASLENFPIGH--------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP  176 (276)
T ss_dssp             ECTTSCCCCSTTCCCTT--------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCT
T ss_pred             ECCCCCccccCchhccc--------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhcc
Confidence            77777776444434433        3678888888887764 24677778888888888888876 44444455555555


Q ss_pred             ----EEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccC
Q 045270          206 ----KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIP  266 (440)
Q Consensus       206 ----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~  266 (440)
                          .|++++|.+....... +. ..+|+.|++++|.++.++.  +..+++|+.|++++|.+....+
T Consensus       177 ~l~l~L~ls~n~l~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          177 LLNLSLDLSLNPMNFIQPGA-FK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             TCCEEEECCSSCCCEECTTS-SC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ccceeeecCCCcccccCccc-cC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence                7888888887655443 22 3478999999998888776  6788899999999988876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=8.6e-21  Score=167.64  Aligned_cols=202  Identities=21%  Similarity=0.242  Sum_probs=124.2

Q ss_pred             CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      ..+.++++++.+..  +|..+.  +++++|++++|.+.+..+.+|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            45566666665543  444343  45666666666665444445666666666666666555 33333344455555555


Q ss_pred             ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270          128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL  207 (440)
Q Consensus       128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  207 (440)
                      +++|.+                                ....+..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus        92 l~~n~l--------------------------------~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L  138 (270)
T 2o6q_A           92 VTDNKL--------------------------------QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL  138 (270)
T ss_dssp             CCSSCC--------------------------------CCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCcC--------------------------------CcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEE
Confidence            555544                                4322333444555555555555554 3344445566666666


Q ss_pred             EcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCc
Q 045270          208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN  285 (440)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  285 (440)
                      ++++|.++...... +..+++|+.|++++|.++.++.  +..+++|+.|++++|.+.+..+..+..  .++|+.|++++|
T Consensus       139 ~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~l~~N  215 (270)
T 2o6q_A          139 SLGYNELQSLPKGV-FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS--LEKLKMLQLQEN  215 (270)
T ss_dssp             ECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT--CTTCCEEECCSS
T ss_pred             ECCCCcCCccCHhH-ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc--ccCCCEEEecCC
Confidence            66666665444333 5667788888888888887765  788999999999999998655554533  456999999999


Q ss_pred             ccccc
Q 045270          286 LLVGF  290 (440)
Q Consensus       286 ~~~~~  290 (440)
                      .+...
T Consensus       216 ~~~c~  220 (270)
T 2o6q_A          216 PWDCT  220 (270)
T ss_dssp             CBCCS
T ss_pred             CeeCC
Confidence            87643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=1.4e-21  Score=173.43  Aligned_cols=206  Identities=21%  Similarity=0.190  Sum_probs=173.0

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+.++++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEECTT--TTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccccCHh--HhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence            4699999999999876665  799999999999999998754 5567899999999999999999777788999999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCC-CCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGS-IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL  179 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  179 (440)
                      |++++|.+.+ ++...+..+++|++|++++|.+... +|..+..+        ++|++|++++|.+.+..+..+..+++|
T Consensus       105 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l--------~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A          105 LVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--------TNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             EECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC--------TTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             EECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccC--------CCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            9999999984 4444588999999999999999753 57777655        799999999999986666677777777


Q ss_pred             c----EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCC
Q 045270          180 T----SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE  241 (440)
Q Consensus       180 ~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  241 (440)
                      +    +|++++|.+. .++...+. ..+|+.|++++|.++...... +..+++|+.|++++|.++.
T Consensus       176 ~~l~l~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          176 PLLNLSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TTCCEEEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTT-TTTCCSCCEEECCSSCBCC
T ss_pred             cccceeeecCCCccc-ccCccccC-CCcccEEECCCCceeecCHhH-hcccccccEEEccCCcccc
Confidence            7    8999999987 45544443 348999999999998665543 6789999999999998873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=5e-21  Score=170.54  Aligned_cols=204  Identities=24%  Similarity=0.224  Sum_probs=160.8

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL  121 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~  121 (440)
                      .+++++++++++++++.+..  +|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+++ ++.  ...++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSCCT
T ss_pred             cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC--CCCCC
Confidence            47788888888888887753  565554  688889999888887777788888899999999888873 333  26788


Q ss_pred             cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270          122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL  201 (440)
Q Consensus       122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  201 (440)
                      +|++|++++|.+. .+|..+..+        ++|++|++++|.+....+..|..+++|++|++++|.+. .++...|..+
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l--------~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l  147 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTL--------PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT  147 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTC--------TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred             cCCEEECCCCcCC-cCchhhccC--------CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccc
Confidence            8888999888887 677665444        68889999999888555567888889999999988887 5666667788


Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCccccc
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~  263 (440)
                      ++|+.|++++|+++...... +..+++|+.|++++|.++.+|. +...+.|+.+++++|.+..
T Consensus       148 ~~L~~L~L~~N~l~~l~~~~-~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          148 PKLEKLSLANNNLTELPAGL-LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTCCEEECTTSCCSCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCCCEEECCCCcCCccCHHH-hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            88999999988887655443 6678888999999998888877 6677788888888887753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2e-21  Score=171.83  Aligned_cols=209  Identities=21%  Similarity=0.193  Sum_probs=150.3

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL  121 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~  121 (440)
                      ....+++|+.|+++++.+...   ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+. .++...+..++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~---~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  109 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLT  109 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCT
T ss_pred             ccccccceeeeeeCCCCcccc---cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCc
Confidence            466778888888887776432   347778888888888887764 3 36778888888888888877 44444567788


Q ss_pred             cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270          122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL  201 (440)
Q Consensus       122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  201 (440)
                      +|++|++++|.+.+..+..+..+        ++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+...+..+
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l  180 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKL--------TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKL  180 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTC--------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             CCCEEECCCCcCCccCHHHhccC--------CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCC
Confidence            88888888888774444444433        67888888888877555555677888888888888876 5555556778


Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCccccc
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWR  271 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  271 (440)
                      ++|+.|++++|.+....... +..+++|+.|++++|.+.     ..++.++.++++.|.+++.+|.++..
T Consensus       181 ~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~~~-----~~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          181 TQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             TTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSCBC-----CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             ccCCEEECCCCcCCccCHHH-HhCCcCCCEEEccCCCcc-----ccCcHHHHHHHHHHhCCCcccCcccc
Confidence            88888888888877655433 667788888888888654     34667888888888888877776643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=2.6e-20  Score=165.93  Aligned_cols=196  Identities=24%  Similarity=0.270  Sum_probs=96.3

Q ss_pred             hcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccc
Q 045270          199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVG  276 (440)
Q Consensus       199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  276 (440)
                      ..+++++.++++++.++..+...    .+.++.|++++|.++.++.  +..+++|+.|++++|.+++..+.    ...++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~   78 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPV   78 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTT
T ss_pred             cccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCc
Confidence            45556666666666665443221    2456666666666665532  55666666666666665432221    12334


Q ss_pred             eeEEEccCcccccccCC-ccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccc
Q 045270          277 LHCLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL  355 (440)
Q Consensus       277 L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  355 (440)
                      |+.|++++|.+..++.. ..+++|++|+                     +++|.++ .++...+..+++|++|++++|.+
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~---------------------l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l  136 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLD---------------------VSFNRLT-SLPLGALRGLGELQELYLKGNEL  136 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEE---------------------CCSSCCC-CCCSSTTTTCTTCCEEECTTSCC
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEE---------------------CCCCcCc-ccCHHHHcCCCCCCEEECCCCCC
Confidence            55555555555544432 2344444444                     4444444 33322222245555555555555


Q ss_pred             cccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcc
Q 045270          356 TGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF  425 (440)
Q Consensus       356 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  425 (440)
                      ++..+..|..+++|+.|++++|+++.++...+  ..+|+.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus       137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            44444444445555555555555554443322  233555555555554 3333344444555555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.1e-20  Score=163.22  Aligned_cols=191  Identities=23%  Similarity=0.281  Sum_probs=146.6

Q ss_pred             CCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCcccc
Q 045270            7 TDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAG   86 (440)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~   86 (440)
                      ++|+.|.|..|..  ..++++++++.++. +|.  .+.  +.++.|++++|.+... .+..+.++++|++|++++|.+.+
T Consensus         2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~   73 (251)
T 3m19_A            2 KTCETVTGCTCNE--GKKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT   73 (251)
T ss_dssp             --CHHHHSSEEEG--GGTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred             ccCCCCCceEcCC--CCeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence            4678899999963  34678999988874 443  333  6899999999998766 66678999999999999999997


Q ss_pred             CCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC
Q 045270           87 HIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR  166 (440)
Q Consensus        87 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~  166 (440)
                      ..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..        +++|++|++++|.+.
T Consensus        74 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           74 LSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR--------LTKLKELRLNTNQLQ  144 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCC
T ss_pred             cCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhcc--------CCcccEEECcCCcCC
Confidence            77777899999999999999998 455456788899999999999887433333333        368888888888887


Q ss_pred             CccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCccc
Q 045270          167 GSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLA  215 (440)
Q Consensus       167 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  215 (440)
                      ...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus       145 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          145 SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence            544556777888888888888876 555556677777777777777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=6.4e-22  Score=181.05  Aligned_cols=262  Identities=19%  Similarity=0.204  Sum_probs=190.8

Q ss_pred             CcceeeeeeCCCCceEEEeeccceeecccCCCcccccc--CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCcccc
Q 045270            9 CCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSL--HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAG   86 (440)
Q Consensus         9 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~   86 (440)
                      |..|.++.++ ...+++++++++.+..   .  .+..+  ++++.|+++++.+... .+ .+..+++|++|++++|.+.+
T Consensus        36 c~~W~~~~~~-~~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           36 CKRWYRLASD-ESLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             CHHHHHHHTC-STTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHhcC-chhheeeccccccCCH---H--HHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCCCcCH
Confidence            3448888775 3568899999987762   2  56666  8999999999988664 33 35678999999999998875


Q ss_pred             C-CcccccccccCceecCCCCcccCccchhhhcccccceEEEecCC-ccCCC-CCccccccccccccCcccccEEEcCCC
Q 045270           87 H-IPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN-SLNGS-IPRSMFEFPIFSNASSSALDTLDLSGN  163 (440)
Q Consensus        87 ~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~l~~~~~~~L~~L~l~~~  163 (440)
                      . ++..+..+++|++|++++|.+.+..+. .+..+++|++|++++| .+++. ++..+..        +++|++|++++|
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~--------~~~L~~L~l~~~  178 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSS--------CSRLDELNLSWC  178 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHH--------CTTCCEEECCCC
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhc--------CCCCCEEcCCCC
Confidence            4 777888999999999999987744443 5778999999999999 56532 4443433        478999999999


Q ss_pred             -ccCCc-ccccccccc-CccEEeccccc--cccccchhhHhcCCCCcEEEcCCCc-ccccCCccccCCccccceeecCCC
Q 045270          164 -RLRGS-IPVSVFELK-KLTSLLLSSNN--LHGTVQLDKILNLGNLAKLDLSYNS-LAVDESSRNYSFSPMLELLNLASC  237 (440)
Q Consensus       164 -~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~  237 (440)
                       .+.+. ++..+..++ +|++|++++|.  +........+..+++|+.|++++|. ++...... +..+++|+.|++++|
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRC  257 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTC
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCC
Confidence             77643 466677888 99999999984  4422223456789999999999998 55444443 667899999999999


Q ss_pred             C-CC--CCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC
Q 045270          238 K-LR--EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP  293 (440)
Q Consensus       238 ~-l~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  293 (440)
                      . +.  .+..+..+++|+.|++++| +.......+    ...+..|++++|.+++..+.
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l----~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL----KEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH----HHHSTTSEESCCCSCCTTCS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH----HhhCcceEEecccCccccCC
Confidence            5 32  2223778999999999998 432221111    12366677888888776554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=2.2e-20  Score=165.20  Aligned_cols=199  Identities=23%  Similarity=0.212  Sum_probs=166.4

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .++++|+++++.++.  ..  .+..+++|++|++++|.+...   ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        41 ~~L~~L~l~~~~i~~--~~--~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS--VQ--GIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             TTCCEEECTTSCCCC--CT--TGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cceeeeeeCCCCccc--cc--ccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            689999999998874  22  689999999999999998653   47889999999999999999777777899999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      |++++|.+. .++...+..+++|++|++++|.+++..+..+..        +++|++|++++|.+.+..+..+..+++|+
T Consensus       114 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          114 LVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------LTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------CccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            999999998 455456899999999999999998544444444        47999999999999866666678899999


Q ss_pred             EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC
Q 045270          181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN  244 (440)
Q Consensus       181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~  244 (440)
                      +|++++|.+. ..+...+..+++|+.|++++|.+.        ..++.++.+++..|.+. .+|.
T Consensus       185 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          185 DLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             EEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred             EEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccC
Confidence            9999999998 566567889999999999999874        34667888888888775 4554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4.3e-20  Score=166.20  Aligned_cols=196  Identities=19%  Similarity=0.268  Sum_probs=145.5

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL  121 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~  121 (440)
                      .+..+++|++|+++++.+..  ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ ++  .+..++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~--~~~~l~  107 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS--AIAGLQ  107 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG--GGTTCT
T ss_pred             cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch--hhcCCC
Confidence            45677888888888887754  34 57778888888888888874 443 7888888888888888774 33  477788


Q ss_pred             cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270          122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL  201 (440)
Q Consensus       122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  201 (440)
                      +|++|++++|.+.+ ++. +        ..+++|++|++++|.+.+ .+. +..+++|++|++++|.+. ..+.  +..+
T Consensus       108 ~L~~L~l~~n~l~~-~~~-l--------~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l  172 (308)
T 1h6u_A          108 SIKTLDLTSTQITD-VTP-L--------AGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP--LANL  172 (308)
T ss_dssp             TCCEEECTTSCCCC-CGG-G--------TTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG--GTTC
T ss_pred             CCCEEECCCCCCCC-chh-h--------cCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC-CChh--hcCC
Confidence            88888888888763 332 3        334688888888888773 333 777888888888888776 3332  6778


Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~  263 (440)
                      ++|+.|++++|.++....   +..+++|+.|++++|.++.++.+..+++|+.|++++|.+++
T Consensus       173 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          173 SKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence            888888888888765443   56677888888888888877777788888888888887754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=2.9e-20  Score=161.17  Aligned_cols=196  Identities=15%  Similarity=0.185  Sum_probs=128.2

Q ss_pred             CCCeEEecCCccCCCccccchhcCCCCcEEEcccCc-cccCCcccccccccCceecCCC-CcccCccchhhhcccccceE
Q 045270           48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG-FAGHIPLQISSMARLVALDFSF-NQFSGSISSIRWEHLLNLVY  125 (440)
Q Consensus        48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~~l~~L~~  125 (440)
                      +|++|++++|.+... .+..|..+++|++|++++|. +....+.+|..+++|++|++++ |.++ .++...+..+++|++
T Consensus        32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            667777777666543 33356667777777777775 5544444666777777777776 6665 444445666777777


Q ss_pred             EEecCCccCCCCCccccccccccccCccccc---EEEcCCC-ccCCccccccccccCcc-EEeccccccccccchhhHhc
Q 045270          126 AVLSDNSLNGSIPRSMFEFPIFSNASSSALD---TLDLSGN-RLRGSIPVSVFELKKLT-SLLLSSNNLHGTVQLDKILN  200 (440)
Q Consensus       126 L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~  200 (440)
                      |++++|.++ .+|. +..+        ++|+   +|++++| .+....+..|..+++|+ +|++++|.+. .++...+..
T Consensus       110 L~l~~n~l~-~lp~-~~~l--------~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~  178 (239)
T 2xwt_C          110 LGIFNTGLK-MFPD-LTKV--------YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG  178 (239)
T ss_dssp             EEEEEECCC-SCCC-CTTC--------CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred             EeCCCCCCc-cccc-cccc--------cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence            777777766 3554 4333        3444   7777777 66644444566777777 7777777776 555555555


Q ss_pred             CCCCcEEEcCCCc-ccccCCccccCCc-cccceeecCCCCCCCCCCCcccCcccEEeccCc
Q 045270          201 LGNLAKLDLSYNS-LAVDESSRNYSFS-PMLELLNLASCKLREIPNLKNQSQLQYLYLSEN  259 (440)
Q Consensus       201 ~~~L~~L~l~~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~  259 (440)
                       ++|+.|++++|. ++...... +..+ ++|+.|++++|.++.+|.. .+++|+.|+++++
T Consensus       179 -~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          179 -TKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             -CEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC
T ss_pred             -CCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCCccccCChh-HhccCceeeccCc
Confidence             677888888874 66544443 5566 7888888888888877753 5777888887765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=2.9e-21  Score=178.24  Aligned_cols=256  Identities=19%  Similarity=0.169  Sum_probs=159.1

Q ss_pred             EeeccceeecccCCCccccccCCCCeEEecCCccCCCccc----cchhcCC-CCcEEEcccCccccCCccccccc-----
Q 045270           26 LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIP----SKLANIS-SLTYLNLSDAGFAGHIPLQISSM-----   95 (440)
Q Consensus        26 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----   95 (440)
                      .+++++.+++.+|.  .+...++|++|++++|.+... .+    +.+..++ +|++|++++|.+.+..+..+..+     
T Consensus         3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccchHHHHH--HHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            46777777776655  455555688888888887654 33    5666777 78888888888876666666664     


Q ss_pred             ccCceecCCCCcccCccchh---hhccc-ccceEEEecCCccCCCCCccccccccccccC-cccccEEEcCCCccCCccc
Q 045270           96 ARLVALDFSFNQFSGSISSI---RWEHL-LNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS-SSALDTLDLSGNRLRGSIP  170 (440)
Q Consensus        96 ~~L~~L~L~~~~~~~~~~~~---~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~-~~~L~~L~l~~~~~~~~~~  170 (440)
                      ++|++|++++|.+.+..+..   .+..+ ++|++|++++|.+++..+..+....    .. +++|++|++++|.+.....
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l----~~~~~~L~~L~Ls~N~l~~~~~  155 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF----SNLPASITSLNLRGNDLGIKSS  155 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH----TTSCTTCCEEECTTSCGGGSCH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH----HhCCCceeEEEccCCcCCHHHH
Confidence            78888888888877444331   13333 7888888888888755544443321    11 2578888888887764332


Q ss_pred             ----ccccccc-CccEEeccccccccccchh----hHhcC-CCCcEEEcCCCcccccCCcc---ccC-CccccceeecCC
Q 045270          171 ----VSVFELK-KLTSLLLSSNNLHGTVQLD----KILNL-GNLAKLDLSYNSLAVDESSR---NYS-FSPMLELLNLAS  236 (440)
Q Consensus       171 ----~~~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~---~~~-~~~~L~~L~l~~  236 (440)
                          ..+...+ +|++|++++|.+. .....    .+..+ ++|+.|++++|.++......   .+. ..++|+.|++++
T Consensus       156 ~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~  234 (362)
T 3goz_A          156 DELIQILAAIPANVNSLNLRGNNLA-SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL  234 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             HHHHHHHhcCCccccEeeecCCCCc-hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence                2334444 7888888888776 33322    23344 48888888888876532221   122 235788888888


Q ss_pred             CCCCCCCC------CcccCcccEEeccCcccccccCcccc-----cccccceeEEEccCccccc
Q 045270          237 CKLREIPN------LKNQSQLQYLYLSENQISREIPNWIW-----RVSVVGLHCLNLSHNLLVG  289 (440)
Q Consensus       237 ~~l~~l~~------~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~  289 (440)
                      |.++..+.      +..+++|+.|++++|.+.+..+..+.     ....++|+.+++++|.+..
T Consensus       235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            87776543      46677788888888774432222110     0123346666666665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=7.3e-22  Score=180.66  Aligned_cols=222  Identities=18%  Similarity=0.143  Sum_probs=110.9

Q ss_pred             CCeEEecCCccCCCccccchhcC--CCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270           49 LRSLNLARTSFNGTQIPSKLANI--SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA  126 (440)
Q Consensus        49 L~~L~l~~~~~~~~~l~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L  126 (440)
                      ++.++++++.+.    +..+..+  ++++.|++.++.+.+..+ .+..+++|++|++++|.+.+......+..+++|++|
T Consensus        49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC----HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            555666555543    2334444  566666666666553333 344556666666666655433122235556666666


Q ss_pred             EecCCccCCCCCccccccccccccCcccccEEEcCCC-ccCC-ccccccccccCccEEecccc-ccccccchhhHhcCC-
Q 045270          127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN-RLRG-SIPVSVFELKKLTSLLLSSN-NLHGTVQLDKILNLG-  202 (440)
Q Consensus       127 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-  202 (440)
                      ++++|.+++..+..+..        +++|++|++++| .+.+ .++..+..+++|++|++++| .+.+......+..++ 
T Consensus       124 ~L~~~~l~~~~~~~l~~--------~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  195 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAK--------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  195 (336)
T ss_dssp             ECTTCBCCHHHHHHHTT--------CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             eCcCcccCHHHHHHHhc--------CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence            66666555444444432        245666666665 3432 13344555666666666666 554221233345556 


Q ss_pred             CCcEEEcCCCc--ccccCCccccCCccccceeecCCCC-CC--CCCCCcccCcccEEeccCcc-cccccCcccccccccc
Q 045270          203 NLAKLDLSYNS--LAVDESSRNYSFSPMLELLNLASCK-LR--EIPNLKNQSQLQYLYLSENQ-ISREIPNWIWRVSVVG  276 (440)
Q Consensus       203 ~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~  276 (440)
                      +|+.|++++|.  ++.......+..+++|+.|++++|. ++  .++.+..+++|+.|++++|. +.......+.  ..++
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~--~~~~  273 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG--EIPT  273 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG--GCTT
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh--cCCC
Confidence            66666666662  3211111223445566666666665 33  12235555666666666653 2111111221  2344


Q ss_pred             eeEEEccCc
Q 045270          277 LHCLNLSHN  285 (440)
Q Consensus       277 L~~L~l~~~  285 (440)
                      |+.|++++|
T Consensus       274 L~~L~l~~~  282 (336)
T 2ast_B          274 LKTLQVFGI  282 (336)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeccCc
Confidence            666666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=6.2e-20  Score=165.13  Aligned_cols=195  Identities=21%  Similarity=0.271  Sum_probs=113.6

Q ss_pred             HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccce
Q 045270          198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGL  277 (440)
Q Consensus       198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  277 (440)
                      ...+++|+.|+++++.+....   .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+. + .+.  ..++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~--~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-S-AIA--GLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC-G-GGT--TCTTC
T ss_pred             HHHcCCcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc-h-hhc--CCCCC
Confidence            345567777777777765443   2556777777777777777776677777777777777776542 2 222  23346


Q ss_pred             eEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccc
Q 045270          278 HCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG  357 (440)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  357 (440)
                      +.|++++|.++.+++...++                     +|++|++++|.+. .++. +. .+++|++|++++|.+++
T Consensus       110 ~~L~l~~n~l~~~~~l~~l~---------------------~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          110 KTLDLTSTQITDVTPLAGLS---------------------NLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             CEEECTTSCCCCCGGGTTCT---------------------TCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCC
T ss_pred             CEEECCCCCCCCchhhcCCC---------------------CCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCC
Confidence            66666666665554444444                     4555555555554 2222 22 25566666666666654


Q ss_pred             cchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270          358 IIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD  427 (440)
Q Consensus       358 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  427 (440)
                      ..+  +..+++|++|++++|.+.+++.....++|+.|++++|++.+..+  +..+++|+.|++++|++++
T Consensus       166 ~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          166 LTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            322  55566666666666666655443334456666666666664432  5566666666666666643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=4e-21  Score=173.39  Aligned_cols=231  Identities=21%  Similarity=0.213  Sum_probs=177.0

Q ss_pred             ccCCCCeEEecCCccCCCccccc--hhcCCCCcEEEcccCccccCCcccc--cccccCceecCCCCcccCccc---hhhh
Q 045270           45 SLHYLRSLNLARTSFNGTQIPSK--LANISSLTYLNLSDAGFAGHIPLQI--SSMARLVALDFSFNQFSGSIS---SIRW  117 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~---~~~~  117 (440)
                      ....++.+.+..+.+....+...  +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+   ...+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            44467888888877754322222  2245779999999999998888888  899999999999999986543   2345


Q ss_pred             cccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc--c--ccccccccCccEEecccccccccc
Q 045270          118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS--I--PVSVFELKKLTSLLLSSNNLHGTV  193 (440)
Q Consensus       118 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~  193 (440)
                      ..+++|++|++++|.+....+..+..+        ++|++|++++|.+.+.  .  +..+..+++|++|++++|.++ ..
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l--------~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l  212 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAF--------PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TP  212 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCC--------TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccC--------CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-ch
Confidence            689999999999999986666776554        7999999999987532  2  233467899999999999986 33


Q ss_pred             ch---hhHhcCCCCcEEEcCCCcccccCCccc--cCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcc
Q 045270          194 QL---DKILNLGNLAKLDLSYNSLAVDESSRN--YSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNW  268 (440)
Q Consensus       194 ~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~  268 (440)
                      +.   ..++.+++|+.|++++|.+....+...  +..+++|++|++++|.++.+|... .++|+.|++++|.+++. |. 
T Consensus       213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~-~~-  289 (310)
T 4glp_A          213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRA-PQ-  289 (310)
T ss_dssp             HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSC-CC-
T ss_pred             HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCC-ch-
Confidence            32   245788999999999999987644332  223479999999999999988722 38999999999999853 32 


Q ss_pred             cccccccceeEEEccCccccc
Q 045270          269 IWRVSVVGLHCLNLSHNLLVG  289 (440)
Q Consensus       269 ~~~~~~~~L~~L~l~~~~~~~  289 (440)
                      +  ...++|+.|++++|.++.
T Consensus       290 ~--~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          290 P--DELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             T--TSCCCCSCEECSSTTTSC
T ss_pred             h--hhCCCccEEECcCCCCCC
Confidence            2  234669999999998864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=4.3e-20  Score=160.13  Aligned_cols=197  Identities=15%  Similarity=0.119  Sum_probs=118.0

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCc-cCCCccccchhcCCCCcEEEccc-CccccCCcccccccccC
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTS-FNGTQIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARL   98 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L   98 (440)
                      .++++|++++|.+++..+.  .|..+++|++|++++|+ +... .+..|.++++|++|++++ |.+....+..|..+++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             CcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            3567777777776654444  56667777777777665 4332 233566677777777776 66664445566667777


Q ss_pred             ceecCCCCcccCccchhhhcccccce---EEEecCC-ccCCCCCccccccccccccCccccc-EEEcCCCccCCcccccc
Q 045270           99 VALDFSFNQFSGSISSIRWEHLLNLV---YAVLSDN-SLNGSIPRSMFEFPIFSNASSSALD-TLDLSGNRLRGSIPVSV  173 (440)
Q Consensus        99 ~~L~L~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~l~~~~~~~L~-~L~l~~~~~~~~~~~~~  173 (440)
                      ++|++++|.+.+ ++.  +..+++|+   +|++++| .+....+..+.        .+++|+ +|++++|.+. .++...
T Consensus       108 ~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--------~l~~L~~~L~l~~n~l~-~i~~~~  175 (239)
T 2xwt_C          108 KFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ--------GLCNETLTLKLYNNGFT-SVQGYA  175 (239)
T ss_dssp             CEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT--------TTBSSEEEEECCSCCCC-EECTTT
T ss_pred             CEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCccccc--------chhcceeEEEcCCCCCc-ccCHhh
Confidence            777777776664 332  55555555   7777777 66532222332        235666 7777777666 444433


Q ss_pred             ccccCccEEeccccc-cccccchhhHhcC-CCCcEEEcCCCcccccCCccccCCccccceeecCCC
Q 045270          174 FELKKLTSLLLSSNN-LHGTVQLDKILNL-GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC  237 (440)
Q Consensus       174 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  237 (440)
                      ...++|++|++++|. +. .++...+..+ ++|+.|++++|.++..+..    .+++|+.|++.++
T Consensus       176 ~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~  236 (239)
T 2xwt_C          176 FNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT  236 (239)
T ss_dssp             TTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred             cCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence            333667777777773 55 5555556666 6777777777766544322    3556666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=170.26  Aligned_cols=229  Identities=22%  Similarity=0.219  Sum_probs=174.0

Q ss_pred             CceEEEeeccceeecccC-CCccccccCCCCeEEecCCccCCCccccch--hcCCCCcEEEcccCccccCCc----cccc
Q 045270           21 GHVIGLDLSTESISGGIE-NAASLFSLHYLRSLNLARTSFNGTQIPSKL--ANISSLTYLNLSDAGFAGHIP----LQIS   93 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~   93 (440)
                      .+++.+.+.++.++.... ....+..+++|++|++++|.+... .|..+  ..+++|++|++++|.+.+..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            357888888887753211 111234567899999999998766 67776  889999999999999986544    3456


Q ss_pred             ccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCC--CCccccccccccccCcccccEEEcCCCccCCcccc
Q 045270           94 SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGS--IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV  171 (440)
Q Consensus        94 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~  171 (440)
                      .+++|++|++++|.+. ..+...+..+++|++|++++|.+.+.  ++.....      ..+++|++|++++|.+. ..+.
T Consensus       143 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~------~~l~~L~~L~Ls~N~l~-~l~~  214 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP------HKFPAIQNLALRNTGME-TPTG  214 (310)
T ss_dssp             BCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT------TSSCCCCSCBCCSSCCC-CHHH
T ss_pred             hccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh------hcCCCCCEEECCCCCCC-chHH
Confidence            7899999999999997 44444688999999999999987532  2211110      23478999999999986 3443


Q ss_pred             ----ccccccCccEEeccccccccccchhhHhcC---CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC
Q 045270          172 ----SVFELKKLTSLLLSSNNLHGTVQLDKILNL---GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN  244 (440)
Q Consensus       172 ----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~  244 (440)
                          .+..+++|++|++++|.+.+..+ ..+..+   ++|+.|++++|.++..+..  +  .++|+.|++++|.++.+|.
T Consensus       215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~N~l~~lp~~--~--~~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          215 VCAALAAAGVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSFAGLEQVPKG--L--PAKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             HHHHHHHHTCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCSSCCCSCCSC--C--CSCCSCEECCSCCCCSCCC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCCCCCCchhhh--h--cCCCCEEECCCCcCCCCch
Confidence                24678999999999999974433 233444   7999999999999854332  2  3799999999999999888


Q ss_pred             CcccCcccEEeccCccccc
Q 045270          245 LKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~~  263 (440)
                      +..+++|+.|++++|.++.
T Consensus       290 ~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          290 PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTSCCCCSCEECSSTTTSC
T ss_pred             hhhCCCccEEECcCCCCCC
Confidence            8889999999999998864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.3e-19  Score=166.29  Aligned_cols=234  Identities=19%  Similarity=0.171  Sum_probs=175.0

Q ss_pred             cceeeeeeCCC----------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcE-EE
Q 045270           10 CDWSGVDCDEA----------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTY-LN   78 (440)
Q Consensus        10 ~~~~~~~~~~~----------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~-L~   78 (440)
                      |.|..|.|...          .++++|+|++|.++...+.  +|..+++|++|++++|.+...--+.+|.+++++++ +.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            45778888532          4789999999999865444  78999999999999998865412356788888776 56


Q ss_pred             cccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCC-ccCCCCCcc-ccccccccccCccccc
Q 045270           79 LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN-SLNGSIPRS-MFEFPIFSNASSSALD  156 (440)
Q Consensus        79 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~-~~~l~~l~~~~~~~L~  156 (440)
                      +.+|.+....|.+|..+++|++|++++|.+. .++...+....++..+++.++ .+. .++.. +..++       ..++
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~-------~~l~  157 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLS-------FESV  157 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSB-------SSCE
T ss_pred             ccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccc-cccccchhhcc-------hhhh
Confidence            6678888677788899999999999999988 444445667778888888664 454 44443 33222       4688


Q ss_pred             EEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCC
Q 045270          157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS  236 (440)
Q Consensus       157 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  236 (440)
                      +|++++|.+. .++.......+|+++.+.++...+.++...|..+++|+.|++++|.++..+...    +..|++|.+.+
T Consensus       158 ~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~----~~~L~~L~~l~  232 (350)
T 4ay9_X          158 ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG----LENLKKLRARS  232 (350)
T ss_dssp             EEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS----CTTCCEEECTT
T ss_pred             hhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh----hccchHhhhcc
Confidence            8999999998 566666677889999998644334788778899999999999999988665433    44566665554


Q ss_pred             C-CCCCCCCCcccCcccEEeccCc
Q 045270          237 C-KLREIPNLKNQSQLQYLYLSEN  259 (440)
Q Consensus       237 ~-~l~~l~~~~~~~~L~~L~l~~~  259 (440)
                      + .++.+|.+..+++|+.+++.++
T Consensus       233 ~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          233 TYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             CCCcCcCCCchhCcChhhCcCCCC
Confidence            4 5778888888999999998754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=7.1e-21  Score=175.61  Aligned_cols=242  Identities=20%  Similarity=0.178  Sum_probs=178.4

Q ss_pred             CceEEEeeccceeecccCCC--ccccccC-CCCeEEecCCccCCCccccchhcC-----CCCcEEEcccCccccCCcccc
Q 045270           21 GHVIGLDLSTESISGGIENA--ASLFSLH-YLRSLNLARTSFNGTQIPSKLANI-----SSLTYLNLSDAGFAGHIPLQI   92 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~--~~~~~l~-~L~~L~l~~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~   92 (440)
                      .++++|++++|.+++..+..  ..+..++ +|++|++++|.+... .+..+..+     ++|++|++++|.+.+..+..+
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            56999999999998655410  2678888 999999999998765 55566654     999999999999987766655


Q ss_pred             cc----c-ccCceecCCCCcccCccchh---hhcc-cccceEEEecCCccCCCCCccccccccccccCc-ccccEEEcCC
Q 045270           93 SS----M-ARLVALDFSFNQFSGSISSI---RWEH-LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASS-SALDTLDLSG  162 (440)
Q Consensus        93 ~~----l-~~L~~L~L~~~~~~~~~~~~---~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~-~~L~~L~l~~  162 (440)
                      ..    + ++|++|++++|.+.+.....   .+.. .++|++|++++|.+++..+..+....    ... ++|++|++++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l----~~~~~~L~~L~Ls~  176 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL----AAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH----HTSCTTCCEEECTT
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH----hcCCccccEeeecC
Confidence            44    4 89999999999998554332   1333 36999999999999865444432211    122 4899999999


Q ss_pred             CccCCccccccc----cc-cCccEEecccccccccc---chhhHhc-CCCCcEEEcCCCcccccCC---ccccCCccccc
Q 045270          163 NRLRGSIPVSVF----EL-KKLTSLLLSSNNLHGTV---QLDKILN-LGNLAKLDLSYNSLAVDES---SRNYSFSPMLE  230 (440)
Q Consensus       163 ~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~---~~~~~~~-~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~  230 (440)
                      |.+....+..+.    .+ ++|++|++++|.+....   -...+.. .++|+.|++++|.++....   ...+..+++|+
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~  256 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ  256 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence            999865554443    44 59999999999987311   1123444 5699999999999876544   22356778999


Q ss_pred             eeecCCCCCCCCC--------C-CcccCcccEEeccCcccccccCc
Q 045270          231 LLNLASCKLREIP--------N-LKNQSQLQYLYLSENQISREIPN  267 (440)
Q Consensus       231 ~L~l~~~~l~~l~--------~-~~~~~~L~~L~l~~~~~~~~~~~  267 (440)
                      .|++++|.+..+.        . +..+++|+.|++++|.+....+.
T Consensus       257 ~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             EEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             EEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence            9999999844332        2 67889999999999998765443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.9e-19  Score=163.94  Aligned_cols=239  Identities=16%  Similarity=0.139  Sum_probs=123.1

Q ss_pred             EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCC
Q 045270          125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL  204 (440)
Q Consensus       125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  204 (440)
                      .++.++++++ .+|..+.          +++++|++++|.+....+..|.++++|++|++++|.+.+.++...|.+++++
T Consensus        13 ~v~C~~~~Lt-~iP~~l~----------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDLP----------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             EEEEESTTCC-SCCTTCC----------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             EEEecCCCCC-ccCcCcC----------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence            4455555555 5555442          3566666666666632223456666666666666665444555555555555


Q ss_pred             cE-EEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCc-ccccccCcccccccccceeEE
Q 045270          205 AK-LDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSEN-QISREIPNWIWRVSVVGLHCL  280 (440)
Q Consensus       205 ~~-L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L  280 (440)
                      .. +.+..|.+....+.. +..+++|+.|++++|.++.++.  +.....+..+++.++ .+....+..+.          
T Consensus        82 ~~~l~~~~N~l~~l~~~~-f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~----------  150 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEA-FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV----------  150 (350)
T ss_dssp             CEEEEEEETTCCEECTTS-BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST----------
T ss_pred             hhhhcccCCcccccCchh-hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh----------
Confidence            44 333344444443332 4455555555555555555444  223333444444332 22111111110          


Q ss_pred             EccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEeccc-ccccccc
Q 045270          281 NLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAAN-NGLTGII  359 (440)
Q Consensus       281 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~  359 (440)
                                                        .....++.|++++|.++ .++..++. .++|+.+++.+ |.++.+.
T Consensus       151 ----------------------------------~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~  194 (350)
T 4ay9_X          151 ----------------------------------GLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELP  194 (350)
T ss_dssp             ----------------------------------TSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTTCTTCCCCC
T ss_pred             ----------------------------------hcchhhhhhcccccccc-CCChhhcc-ccchhHHhhccCCcccCCC
Confidence                                              01123555556666655 45555544 45666666653 4455444


Q ss_pred             hhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCC
Q 045270          360 PASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNN  423 (440)
Q Consensus       360 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  423 (440)
                      +..|..+++|++|++++|+++.+|... ...|+.|.+.++.-...+| .+.++++|+.+++.++
T Consensus       195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~-~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          195 NDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTTTTTEECCSEEECTTSCCCCCCSSS-CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             HHHhccCcccchhhcCCCCcCccChhh-hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            455666667777777777666665432 3346666665554443444 3566677777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=5.6e-21  Score=178.11  Aligned_cols=44  Identities=20%  Similarity=0.089  Sum_probs=28.1

Q ss_pred             cccchhcCCCCcEEEcccCccccCCc----ccccccccCceecCCCCc
Q 045270           64 IPSKLANISSLTYLNLSDAGFAGHIP----LQISSMARLVALDFSFNQ  107 (440)
Q Consensus        64 l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~  107 (440)
                      ++..+..+++|++|++++|.+....+    ..+..+++|++|+|++|.
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~   71 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   71 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc
Confidence            45566667777777777777664423    335566777777777653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=1.1e-20  Score=176.10  Aligned_cols=169  Identities=18%  Similarity=0.189  Sum_probs=100.4

Q ss_pred             cccccCCCCeEEecCCccCCCc---cccchhcCCCCcEEEcccCcc---ccCCcccc-------cccccCceecCCCCcc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQ---IPSKLANISSLTYLNLSDAGF---AGHIPLQI-------SSMARLVALDFSFNQF  108 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~l~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~L~~~~~  108 (440)
                      .+..+++|++|++++|.+....   ++..+..+++|++|++++|.+   .+.+|..+       ..+++|++|+|++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            6778899999999999886541   334467899999999998643   44455555       6778888888888888


Q ss_pred             cCcc---chhhhcccccceEEEecCCccCCCCCccccccccccccCc---------ccccEEEcCCCccC-Cccc---cc
Q 045270          109 SGSI---SSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASS---------SALDTLDLSGNRLR-GSIP---VS  172 (440)
Q Consensus       109 ~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~---------~~L~~L~l~~~~~~-~~~~---~~  172 (440)
                      .+..   ....+..+++|++|++++|.+++..+..+...-    ..+         ++|++|++++|.+. ...+   ..
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l----~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL----QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHH----HHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHH----HHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            7531   122467778888888888877543333332210    111         45666666666554 1222   23


Q ss_pred             cccccCccEEeccccccccc----cchhhHhcCCCCcEEEcCCCcc
Q 045270          173 VFELKKLTSLLLSSNNLHGT----VQLDKILNLGNLAKLDLSYNSL  214 (440)
Q Consensus       173 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~  214 (440)
                      +..+++|++|++++|.+...    .....+..+++|+.|++++|.+
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence            33455555555555554311    1111334445555555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=2.6e-18  Score=149.96  Aligned_cols=177  Identities=23%  Similarity=0.329  Sum_probs=94.8

Q ss_pred             CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      ..++++++++.+..  +|..+.  ++++.|++++|.+.+..+..+.++++|++|++++|.+.+ ++...+..+++|++|+
T Consensus        15 ~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEE
Confidence            45566666666543  454444  566777777776665555566666667777666666663 3333455566666666


Q ss_pred             ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270          128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL  207 (440)
Q Consensus       128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  207 (440)
                      +++|.++...+..+..+        ++|++|++++|.+....+..|..+++|++|++++|.+. .++...          
T Consensus        90 L~~n~l~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~----------  150 (251)
T 3m19_A           90 LANNQLASLPLGVFDHL--------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGA----------  150 (251)
T ss_dssp             CTTSCCCCCCTTTTTTC--------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT----------
T ss_pred             CCCCcccccChhHhccc--------CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHH----------
Confidence            66666553322222222        45555555555554322233344444444444444443 233223          


Q ss_pred             EcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCccccc
Q 045270          208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~  263 (440)
                                     +..+++|+.|++++|.++.++.  +..+++|+.|++++|.+..
T Consensus       151 ---------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          151 ---------------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             ---------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             ---------------cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence                           3444555555555555554443  5556666666666666544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=5e-18  Score=163.73  Aligned_cols=186  Identities=23%  Similarity=0.325  Sum_probs=109.0

Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN  281 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  281 (440)
                      .+++.|++++|.++..+...    .++|+.|++++|.++.+|  ..+++|+.|++++|.+++ +|. +..    +|+.|+
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~----~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL----PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-LPA----SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC----CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-CCT----TCCEEE
T ss_pred             CCccEEEeCCCCCCccCHhH----cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-hhc----CCCEEE
Confidence            38899999999887643322    377999999999998888  567889999999988876 555 322    588888


Q ss_pred             ccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchh
Q 045270          282 LSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPA  361 (440)
Q Consensus       282 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  361 (440)
                      +++|.++.++.  .+++|+.|++++|.+.+                      +|.    .+++|+.|++++|.+++ +|.
T Consensus       127 Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~----------------------lp~----~l~~L~~L~Ls~N~L~~-lp~  177 (571)
T 3cvr_A          127 VDNNQLTMLPE--LPALLEYINADNNQLTM----------------------LPE----LPTSLEVLSVRNNQLTF-LPE  177 (571)
T ss_dssp             CCSSCCSCCCC--CCTTCCEEECCSSCCSC----------------------CCC----CCTTCCEEECCSSCCSC-CCC
T ss_pred             CCCCcCCCCCC--cCccccEEeCCCCccCc----------------------CCC----cCCCcCEEECCCCCCCC-cch
Confidence            88887776554  45555555555555443                      332    13444445555444443 222


Q ss_pred             hhhccCCCCEEEcCCCcCCCCCchhhhccc-------cEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCccccc
Q 045270          362 SLCNATTLSLLDLSNNSFMKKSDAFLNCLL-------QTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLY  434 (440)
Q Consensus       362 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  434 (440)
                       +.  ++|+.|++++|.|+.+|.  +..+|       +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+.
T Consensus       178 -l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          178 -LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             -CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             -hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence             32  445555555555544444  11234       55555555555 2344444455555555555555555444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=6.2e-18  Score=143.13  Aligned_cols=152  Identities=20%  Similarity=0.158  Sum_probs=70.8

Q ss_pred             CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      +|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        29 ~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           29 QTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence            455555555554432 2233444555555555555554333333445555555555555554 22322344555555555


Q ss_pred             ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270          128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL  207 (440)
Q Consensus       128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  207 (440)
                      +++|.+.+..+..+..+        ++|++|++++|.+.+..+..+..+++|++|++++|.+.        ..++.|+.|
T Consensus       107 L~~N~l~~~~~~~~~~l--------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L  170 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKL--------TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYL  170 (208)
T ss_dssp             CCSSCCCCCCTTTTTTC--------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHH
T ss_pred             cCCCcCcccCHhHhccC--------CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHH
Confidence            55555542222222222        45555555555554333333445555555555555443        123445555


Q ss_pred             EcCCCccccc
Q 045270          208 DLSYNSLAVD  217 (440)
Q Consensus       208 ~l~~~~~~~~  217 (440)
                      +++.|.+++.
T Consensus       171 ~~~~n~~~g~  180 (208)
T 2o6s_A          171 SEWINKHSGV  180 (208)
T ss_dssp             HHHHHHCTTT
T ss_pred             HHHHHhCCce
Confidence            5555554433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=2.9e-17  Score=140.96  Aligned_cols=163  Identities=21%  Similarity=0.262  Sum_probs=113.3

Q ss_pred             CCCCCCCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEccc
Q 045270            2 QWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD   81 (440)
Q Consensus         2 ~w~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~   81 (440)
                      .|..++..|.|.+|.|..           +.++ .+|.  .+  .++|++|++++|.+... .+..|..+++|++|++++
T Consensus        11 ~~~~~~~~Cs~~~v~c~~-----------~~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~   73 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRS-----------KRHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGS   73 (229)
T ss_dssp             CCCCTTCEEETTEEECTT-----------SCCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred             ccCCCCCEEeCCEeEccC-----------CCcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCC
Confidence            366788899999888863           2232 2332  22  27788888888887665 567777888888888888


Q ss_pred             CccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcC
Q 045270           82 AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLS  161 (440)
Q Consensus        82 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~  161 (440)
                      |.+....+..+..+++|++|+|++|.++ .++...+..+++|++|++++|.+. .+|..+..+        ++|++|+++
T Consensus        74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l--------~~L~~L~L~  143 (229)
T 3e6j_A           74 NQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL--------THLTHLALD  143 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGC--------TTCSEEECC
T ss_pred             CCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccC--------CCCCEEECC
Confidence            8887544455677888888888888877 444445677777788888777777 666666544        577777777


Q ss_pred             CCccCCccccccccccCccEEecccccccc
Q 045270          162 GNRLRGSIPVSVFELKKLTSLLLSSNNLHG  191 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  191 (440)
                      +|.+....+..+..+++|+.|++.+|.+..
T Consensus       144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            777774444556667777777777776653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=3.4e-17  Score=145.90  Aligned_cols=172  Identities=19%  Similarity=0.267  Sum_probs=96.0

Q ss_pred             hcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccc
Q 045270           69 ANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS  148 (440)
Q Consensus        69 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~  148 (440)
                      ..+++|++|+++++.+. .++ .+..+++|++|++++|.+.+. +.  +..+++|++|++++|.+. .++. +       
T Consensus        43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~-~~~~-l-------  108 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-KP--LANLKNLGWLFLDENKVK-DLSS-L-------  108 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCC-CGGG-G-------
T ss_pred             hhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCC-cc--cccCCCCCEEECCCCcCC-CChh-h-------
Confidence            34455555555555444 222 244455555555555554422 21  445555555555555544 2221 2       


Q ss_pred             ccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccc
Q 045270          149 NASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM  228 (440)
Q Consensus       149 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  228 (440)
                       ..+++|++|++++|.+.. + ..+..+++|++|++++|.+.+ .  ..+..+++|+.|++++|.+....+   +..+++
T Consensus       109 -~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~  179 (291)
T 1h6t_A          109 -KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTK  179 (291)
T ss_dssp             -TTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTT
T ss_pred             -ccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c--hhhccCCCCCEEEccCCccccchh---hcCCCc
Confidence             222455666666655552 2 245556666666666666552 2  245666677777777776654433   556677


Q ss_pred             cceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270          229 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISR  263 (440)
Q Consensus       229 L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~  263 (440)
                      |+.|++++|.++.++.+..+++|+.|++++|.+..
T Consensus       180 L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred             cCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence            77777777777777667777777778877777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=5.6e-17  Score=156.44  Aligned_cols=138  Identities=25%  Similarity=0.340  Sum_probs=101.2

Q ss_pred             CccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEecc
Q 045270          178 KLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS  257 (440)
Q Consensus       178 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~  257 (440)
                      +++.|++++|.+. .++...   .++|+.|++++|.++..+     ..+++|+.|++++|.++.+|.+..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPELPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECC
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCCcchhhc--CCCEEECC
Confidence            8999999999987 455432   378999999999998544     347899999999999999887433  99999999


Q ss_pred             CcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCc
Q 045270          258 ENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPA  336 (440)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  336 (440)
                      +|.+++ +|.     ..++|+.|++++|.++.++.  .+++|++|++++|.+.+... ..++|+.|+|++|.++ .+|.
T Consensus       129 ~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          129 NNQLTM-LPE-----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             SSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS-SCCC
T ss_pred             CCcCCC-CCC-----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCC-chhh
Confidence            999986 554     34569999999999988665  45566666666665554222 3345555555555554 4443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=7.1e-17  Score=143.81  Aligned_cols=170  Identities=21%  Similarity=0.254  Sum_probs=79.2

Q ss_pred             cCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeE
Q 045270          200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC  279 (440)
Q Consensus       200 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  279 (440)
                      .+++|+.|++++|.+.....   +..+++|+.|++++|.++.++.+..+++|+.|++++|.+.                 
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~-----------------  103 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-----------------  103 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-----------------
T ss_pred             hcCcccEEEccCCCcccChh---HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCC-----------------
Confidence            44455555555555443321   3344555555555555554444445555555555555443                 


Q ss_pred             EEccCcccccccCCccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEeccccccccc
Q 045270          280 LNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI  358 (440)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  358 (440)
                               .++....+++|++|++++|++.+.. ...+++|+.|++++|.+. .+ ..+. .+++|+.|++++|.+++.
T Consensus       104 ---------~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~-~~-~~l~-~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          104 ---------DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DI-TVLS-RLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             ---------CGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC-CC-GGGG-GCTTCSEEECCSSCCCCC
T ss_pred             ---------CChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCC-cc-hhhc-cCCCCCEEEccCCccccc
Confidence                     3322223344444444444333211 111234445555555444 22 1222 255556666665555543


Q ss_pred             chhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccC
Q 045270          359 IPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQG  403 (440)
Q Consensus       359 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~  403 (440)
                      .+  +..+++|++|++++|.+++++.....++|+.|++++|++..
T Consensus       172 ~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          172 VP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred             hh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence            33  55555555555555555555433233445555555555553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=7.5e-17  Score=135.08  Aligned_cols=149  Identities=12%  Similarity=0.091  Sum_probs=111.3

Q ss_pred             ceeEEEccCcccccccCCccCCceeEEEcCCccccCc-ccCCCCCccEEEccCCcccccCCccccccCCCcceEeccccc
Q 045270          276 GLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN-IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNG  354 (440)
Q Consensus       276 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  354 (440)
                      +++.|++++|.+..++....+++|++|++++|.+... ....+++|++|++++|.+.+..+..+.. +++|++|++++|.
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~  123 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSA  123 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCCEEECCSSB
T ss_pred             CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcC-CCCCCEEEecCCc
Confidence            3555555555555444444566666666666654432 2233578888889888887656666555 9999999999999


Q ss_pred             ccccchhhhhccCCCCEEEcCCCc-CCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270          355 LTGIIPASLCNATTLSLLDLSNNS-FMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD  427 (440)
Q Consensus       355 l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  427 (440)
                      +++..+..+..+++|++|++++|. +.+++.....++|+.|++++|++.+..  .+..+++|+.|++++|++.+
T Consensus       124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            998788899999999999999998 888875445677999999999999643  68899999999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=4.2e-17  Score=159.05  Aligned_cols=176  Identities=20%  Similarity=0.261  Sum_probs=113.1

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL  121 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~  121 (440)
                      .+..+++|+.|++++|.+..  ++ .+..+++|++|+|++|.+.+..+  +..+++|++|+|++|.+.+ ++  .+..++
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~  109 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS--SLKDLK  109 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT--TSTTCT
T ss_pred             chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch--hhccCC
Confidence            45667777777777777643  33 46777777777777777764333  7777777777777777763 33  366777


Q ss_pred             cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270          122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL  201 (440)
Q Consensus       122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  201 (440)
                      +|+.|++++|.+.+ ++ .+.        .+++|+.|++++|.+.. + ..+..+++|+.|++++|.+.+ ..+  +..+
T Consensus       110 ~L~~L~Ls~N~l~~-l~-~l~--------~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l  174 (605)
T 1m9s_A          110 KLKSLSLEHNGISD-IN-GLV--------HLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IVP--LAGL  174 (605)
T ss_dssp             TCCEEECTTSCCCC-CG-GGG--------GCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCC-CGG--GTTC
T ss_pred             CCCEEEecCCCCCC-Cc-ccc--------CCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCC-chh--hccC
Confidence            77777777777763 22 232        33567777777777663 2 456667777777777776653 222  5666


Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP  243 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  243 (440)
                      ++|+.|++++|.+....   .+..+++|+.|++++|.+...|
T Consensus       175 ~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          175 TKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TTCCEEECCSSCCCBCG---GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCCCEEECcCCCCCCCh---HHccCCCCCEEEccCCcCcCCc
Confidence            77777777777665432   2556666777777776665443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=9.3e-17  Score=135.86  Aligned_cols=167  Identities=22%  Similarity=0.224  Sum_probs=128.5

Q ss_pred             CcceeeeeeCCC----------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEE
Q 045270            9 CCDWSGVDCDEA----------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLN   78 (440)
Q Consensus         9 ~~~~~~~~~~~~----------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~   78 (440)
                      .|.|.++.|...          .++++|++++|.+++..+.  .+..+++|++|++++|.+... .+..+..+++|++|+
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLN   82 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh--hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEE
Confidence            367888888542          3689999999988865544  678899999999999888654 445578889999999


Q ss_pred             cccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEE
Q 045270           79 LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTL  158 (440)
Q Consensus        79 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L  158 (440)
                      +++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..        +++|++|
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--------l~~L~~L  153 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR--------LTSLQYI  153 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT--------CTTCCEE
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhcc--------CCCccEE
Confidence            9999888665666788999999999999888 444446788899999999999888444433433        3688999


Q ss_pred             EcCCCccCCccccccccccCccEEeccccccccccc
Q 045270          159 DLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ  194 (440)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  194 (440)
                      ++++|.+.+       .+++|++|.+..+.+.+.++
T Consensus       154 ~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          154 WLHDNPWDC-------TCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             ECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred             EecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence            999887652       45678888888888876666

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.5e-16  Score=155.29  Aligned_cols=106  Identities=23%  Similarity=0.368  Sum_probs=61.6

Q ss_pred             HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccce
Q 045270          198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGL  277 (440)
Q Consensus       198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  277 (440)
                      +..+++|+.|+++++.+....   .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+ .+ .+  ...++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l--~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SL--KDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TS--TTCTTC
T ss_pred             hhcCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hh--ccCCCC
Confidence            345566777777777665443   255667777777777777666666667777777777776653 22 22  223346


Q ss_pred             eEEEccCcccccccCCccCCceeEEEcCCcccc
Q 045270          278 HCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR  310 (440)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (440)
                      +.|++++|.+..++....+++|+.|++++|.+.
T Consensus       112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A          112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             CEEEecCCCCCCCccccCCCccCEEECCCCccC
Confidence            666666665555544444455555555544443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=3.4e-16  Score=133.34  Aligned_cols=157  Identities=17%  Similarity=0.218  Sum_probs=119.9

Q ss_pred             EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270           24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF  103 (440)
Q Consensus        24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  103 (440)
                      ++++++++.++. +|.  .+  .+.+++|++++|.+.....+..|..+++|++|++++|.+.+..+.+|..+++|++|+|
T Consensus        14 ~~l~~s~n~l~~-iP~--~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPE--HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCccc-Ccc--CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            367888887764 443  33  3456889999988865422345788999999999999988666668889999999999


Q ss_pred             CCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEe
Q 045270          104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLL  183 (440)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  183 (440)
                      ++|.+. .++...+..+++|++|++++|.+.+..|..+..+        ++|++|++++|.+.+..|..|..+++|++|+
T Consensus        89 s~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           89 TSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL--------SSVRLLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC--------TTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC--------ccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            999887 4444468888889999999888886666666544        6888888888888866677788888888888


Q ss_pred             ccccccccccc
Q 045270          184 LSSNNLHGTVQ  194 (440)
Q Consensus       184 l~~~~~~~~~~  194 (440)
                      +++|.+.....
T Consensus       160 L~~N~l~c~c~  170 (220)
T 2v70_A          160 LLANPFNCNCY  170 (220)
T ss_dssp             CCSCCEECSGG
T ss_pred             ecCcCCcCCCc
Confidence            88887764444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=3.2e-16  Score=133.51  Aligned_cols=151  Identities=17%  Similarity=0.249  Sum_probs=105.3

Q ss_pred             EEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCC
Q 045270           25 GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS  104 (440)
Q Consensus        25 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~  104 (440)
                      .++++++.++. +|.  .+.  +.|+.|++++|.+... .+..|..+++|++|++++|.+.+..|.+|..+++|++|+|+
T Consensus        15 ~v~c~~~~l~~-iP~--~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           15 IVDCRGKGLTE-IPT--NLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             EEECTTSCCSS-CCS--SCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             EEEcCCCCcCc-CCC--ccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            45556665553 333  232  6788888888887654 44567778888888888888876667778888888888888


Q ss_pred             CCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEec
Q 045270          105 FNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLL  184 (440)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  184 (440)
                      +|.++ .++...+..+++|++|++++|.+....|..+..+        ++|++|++++|.+....+..|..+++|++|++
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           89 GNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL--------HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC--------CCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence            88877 5555566777788888888877775555555444        57777777777777544455666777777777


Q ss_pred             cccccc
Q 045270          185 SSNNLH  190 (440)
Q Consensus       185 ~~~~~~  190 (440)
                      ++|.+.
T Consensus       160 ~~N~~~  165 (220)
T 2v9t_B          160 AQNPFI  165 (220)
T ss_dssp             CSSCEE
T ss_pred             CCCCcC
Confidence            777664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2.6e-16  Score=131.75  Aligned_cols=107  Identities=21%  Similarity=0.248  Sum_probs=51.8

Q ss_pred             hcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccc
Q 045270           69 ANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS  148 (440)
Q Consensus        69 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~  148 (440)
                      ..+++|++|+++++.+. .+| .+..+++|++|++++|.+. .++  .+..+++|++|++++|.+++..+..+..+    
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l----  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGL----  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTC----
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCC----
Confidence            44555666666555555 334 4555555555555555443 222  24445555555555555543334443322    


Q ss_pred             ccCcccccEEEcCCCccCCccccccccccCccEEeccccc
Q 045270          149 NASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNN  188 (440)
Q Consensus       149 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  188 (440)
                          ++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       112 ----~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          112 ----TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             ----TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             ----CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence                345555555554443334444444444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=4e-16  Score=132.90  Aligned_cols=150  Identities=18%  Similarity=0.135  Sum_probs=125.9

Q ss_pred             eeEEEccCcccccccCCccCCceeEEEcCCccccCcc----cCCCCCccEEEccCCcccccCCccccccCCCcceEeccc
Q 045270          277 LHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNI----HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAAN  352 (440)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~  352 (440)
                      -+.++++++.++.++.. ..+.+++|++++|++.+..    ...+++|+.|++++|.++ .++...+..+++|++|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCC
Confidence            45799999999887653 3567799999999988653    234789999999999998 45544444499999999999


Q ss_pred             ccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270          353 NGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK  428 (440)
Q Consensus       353 ~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  428 (440)
                      |.+++..+..|..+++|++|++++|.+..++...+  ..+|+.|++++|.+++..|..|..+++|+.|++++|++...
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99998888889999999999999999998844333  46699999999999988899999999999999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=5.1e-16  Score=132.22  Aligned_cols=149  Identities=18%  Similarity=0.154  Sum_probs=123.1

Q ss_pred             eeEEEccCcccccccCCccCCceeEEEcCCccccCccc---CCCCCccEEEccCCcccccCCccccccCCCcceEecccc
Q 045270          277 LHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH---QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANN  353 (440)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~  353 (440)
                      -+.++.+++.++.++... .++++.|++++|++.....   ..+++|+.|+|++|.+.+..+..+.. +++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCCC
Confidence            356888888888876543 3789999999998876543   33678999999999998544555544 899999999999


Q ss_pred             cccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270          354 GLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD  427 (440)
Q Consensus       354 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  427 (440)
                      .++...+..|..+++|++|++++|++..++...+  ..+|+.|++++|.+++..+..|..+++|+.|++++|++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9997777778999999999999999999854433  4679999999999998888889999999999999999863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=1.2e-15  Score=130.84  Aligned_cols=153  Identities=20%  Similarity=0.221  Sum_probs=120.4

Q ss_pred             CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      .-+.++++++.+..  +|..+.  ++|++|++++|.+.+..|..+..+++|++|+|++|.+. .++...+..+++|+.|+
T Consensus        20 s~~~v~c~~~~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHAS--VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             eCCEeEccCCCcCc--cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence            46678888777743  566554  88999999999998777888999999999999999986 55555678899999999


Q ss_pred             ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270          128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL  207 (440)
Q Consensus       128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  207 (440)
                      +++|.++...+..+..+        ++|++|++++|.+. .+|..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus        95 Ls~N~l~~l~~~~~~~l--------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRL--------VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             CCSSCCCCCCTTTTTTC--------TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCcCCccChhHhCcc--------hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEE
Confidence            99998884444334333        68899999998887 67778888888888888888887 5555667777888888


Q ss_pred             EcCCCccc
Q 045270          208 DLSYNSLA  215 (440)
Q Consensus       208 ~l~~~~~~  215 (440)
                      ++.+|.+.
T Consensus       165 ~l~~N~~~  172 (229)
T 3e6j_A          165 YLFGNPWD  172 (229)
T ss_dssp             ECTTSCBC
T ss_pred             EeeCCCcc
Confidence            88887765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=4.2e-16  Score=143.45  Aligned_cols=175  Identities=24%  Similarity=0.260  Sum_probs=126.2

Q ss_pred             EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEcccCccccCCcccccccccCceec
Q 045270           24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNLSDAGFAGHIPLQISSMARLVALD  102 (440)
Q Consensus        24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  102 (440)
                      +.++++++.++. +|.  .+  .+.++.|++++|.+... .+..+. .+++|++|++++|.+.+..+..|..+++|++|+
T Consensus        21 ~~l~c~~~~l~~-iP~--~~--~~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQ--SL--PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCSSCCSS-CCS--SC--CTTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcCc-cCc--cC--CCCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            467777777764 443  22  24578888888888654 445565 788888888888888866667788888888888


Q ss_pred             CCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccc-c---ccccC
Q 045270          103 FSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVS-V---FELKK  178 (440)
Q Consensus       103 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~-~---~~~~~  178 (440)
                      |++|.+. .++...+..+++|+.|++++|.+....+..+..+        ++|++|++++|.+.. +|.. |   ..+++
T Consensus        95 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l--------~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~  164 (361)
T 2xot_A           95 LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM--------AQLQKLYLSQNQISR-FPVELIKDGNKLPK  164 (361)
T ss_dssp             CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC--------TTCCEEECCSSCCCS-CCGGGTC----CTT
T ss_pred             CCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc--------ccCCEEECCCCcCCe-eCHHHhcCcccCCc
Confidence            8888887 4555567888888888888888875556666444        688888888888874 4433 3   45788


Q ss_pred             ccEEeccccccccccchhhHhcCCC--CcEEEcCCCccc
Q 045270          179 LTSLLLSSNNLHGTVQLDKILNLGN--LAKLDLSYNSLA  215 (440)
Q Consensus       179 L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~  215 (440)
                      |+.|++++|.+. .++...+..++.  ++.|++.+|.+.
T Consensus       165 L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          165 LMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence            888888888887 666666777766  377888887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=6.5e-16  Score=142.19  Aligned_cols=154  Identities=26%  Similarity=0.254  Sum_probs=97.4

Q ss_pred             CCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCccccc-ccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           49 LRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQIS-SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        49 L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      -+.++++++.+..  +|..+.  +.++.|+|++|.+.+..+..+. .+++|++|+|++|.+. .++...+..+++|++|+
T Consensus        20 ~~~l~c~~~~l~~--iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           20 SNILSCSKQQLPN--VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TTEEECCSSCCSS--CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcCc--cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence            3577777777643  565554  4578888888888755555565 7788888888888777 44444577777777777


Q ss_pred             ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhH---hcCCCC
Q 045270          128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKI---LNLGNL  204 (440)
Q Consensus       128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L  204 (440)
                      +++|.+....+..+..        +++|++|++++|.+....+..|..+++|+.|++++|.+. .++...+   ..+++|
T Consensus        95 Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSD--------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKL  165 (361)
T ss_dssp             CCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTC
T ss_pred             CCCCcCCcCCHHHhCC--------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcC
Confidence            7777776333333333        356777777777776545556666677777777776665 3443333   345555


Q ss_pred             cEEEcCCCcccc
Q 045270          205 AKLDLSYNSLAV  216 (440)
Q Consensus       205 ~~L~l~~~~~~~  216 (440)
                      +.|++++|.++.
T Consensus       166 ~~L~L~~N~l~~  177 (361)
T 2xot_A          166 MLLDLSSNKLKK  177 (361)
T ss_dssp             CEEECCSSCCCC
T ss_pred             CEEECCCCCCCc
Confidence            555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=5e-16  Score=136.08  Aligned_cols=147  Identities=25%  Similarity=0.305  Sum_probs=77.8

Q ss_pred             ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270           45 SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV  124 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~  124 (440)
                      .+.++..++++.+.+..  ++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+. +.  +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~--l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP--LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh--hccCCCCC
Confidence            44455556666665543  22 4566667777777766665 344 566666666666666666532 22  55666666


Q ss_pred             EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCC
Q 045270          125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL  204 (440)
Q Consensus       125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  204 (440)
                      +|++++|.+. .+|...         . ++|++|++++|.+.+ .+ .+..+++|++|++++|.+. .++  .+..+++|
T Consensus        89 ~L~L~~N~l~-~l~~~~---------~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L  152 (263)
T 1xeu_A           89 ELSVNRNRLK-NLNGIP---------S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIV--MLGFLSKL  152 (263)
T ss_dssp             EEECCSSCCS-CCTTCC---------C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCG--GGGGCTTC
T ss_pred             EEECCCCccC-CcCccc---------c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC-CCh--HHccCCCC
Confidence            6666666665 232211         1 355666666665552 22 3445555555555555544 221  23444444


Q ss_pred             cEEEcCCCccc
Q 045270          205 AKLDLSYNSLA  215 (440)
Q Consensus       205 ~~L~l~~~~~~  215 (440)
                      +.|++++|.+.
T Consensus       153 ~~L~L~~N~i~  163 (263)
T 1xeu_A          153 EVLDLHGNEIT  163 (263)
T ss_dssp             CEEECTTSCCC
T ss_pred             CEEECCCCcCc
Confidence            44444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=5.4e-16  Score=135.91  Aligned_cols=171  Identities=18%  Similarity=0.157  Sum_probs=108.2

Q ss_pred             CccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEc
Q 045270          225 FSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDL  304 (440)
Q Consensus       225 ~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  304 (440)
                      .+..+..+++.++.++.++.+..+++|+.|++++|.+.. ++ .+.  ..++|+.|++++|.++.+++...+++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~--~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQ--FFTNLKELHLSHNQISDLSPLKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGG--GCTTCCEEECCSSCCCCCGGGTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHh--hCCCCCEEECCCCccCCChhhccCCCCCEEEC
Confidence            355677888888888888878888999999999988863 33 332  34558888888888877776666777777777


Q ss_pred             CCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc
Q 045270          305 SSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD  384 (440)
Q Consensus       305 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  384 (440)
                      ++|++.+......++|++|++++|.+. .++ .+. .+++|+.|++++|.+++. + .+..+++|++|++++|.+.+...
T Consensus        93 ~~N~l~~l~~~~~~~L~~L~L~~N~l~-~~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~~~  167 (263)
T 1xeu_A           93 NRNRLKNLNGIPSACLSRLFLDNNELR-DTD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNTGG  167 (263)
T ss_dssp             CSSCCSCCTTCCCSSCCEEECCSSCCS-BSG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBCTT
T ss_pred             CCCccCCcCccccCcccEEEccCCccC-CCh-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcchHH
Confidence            777665432222256666666666665 232 222 256666666666666543 2 45556666666666666655522


Q ss_pred             hhhhccccEEECCCCcccCC
Q 045270          385 AFLNCLLQTLDLNGNRLQGT  404 (440)
Q Consensus       385 ~~~~~~L~~L~l~~n~~~~~  404 (440)
                      .....+|+.|++++|++...
T Consensus       168 l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             STTCCCCCEEEEEEEEEECC
T ss_pred             hccCCCCCEEeCCCCcccCC
Confidence            22234466666666655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=1.7e-17  Score=160.93  Aligned_cols=121  Identities=22%  Similarity=0.183  Sum_probs=75.8

Q ss_pred             cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceee
Q 045270          154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN  233 (440)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  233 (440)
                      .|++|++++|.+. .+|. +..+++|+.|++++|.+. .++ ..+..+++|+.|++++|.++..+   .+..+++|+.|+
T Consensus       442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~  514 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALENVD---GVANLPRLQELL  514 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEE
T ss_pred             CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccc-hhhhcCCCCCEEECCCCCCCCCc---ccCCCCCCcEEE
Confidence            4666777777666 3554 666777777777777665 444 35667777777777777766532   356677777777


Q ss_pred             cCCCCCCCC--CC-CcccCcccEEeccCcccccccCcccc-cccccceeEEE
Q 045270          234 LASCKLREI--PN-LKNQSQLQYLYLSENQISREIPNWIW-RVSVVGLHCLN  281 (440)
Q Consensus       234 l~~~~l~~l--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~  281 (440)
                      +++|.++.+  |. +..+++|+.|++++|.+++..+.... ....++|+.|+
T Consensus       515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            777777766  44 67777777777777777654332211 11234566654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=6e-16  Score=140.64  Aligned_cols=215  Identities=17%  Similarity=0.158  Sum_probs=101.4

Q ss_pred             ccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC----CCCCCCC--CcccC
Q 045270          176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC----KLREIPN--LKNQS  249 (440)
Q Consensus       176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~----~l~~l~~--~~~~~  249 (440)
                      +++|++|.+.+ .+. .++...|.+|++|+.+++.++.+....... |..+.++..+.....    ....+..  +..+.
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a-F~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEA-LADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTS-SCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhh-hcCCCceEEecCcchhhhhcccccccccccccc
Confidence            77777777776 555 566666777777777777777665544443 444444544444331    1112221  33344


Q ss_pred             ccc-EEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC---cccCCCCCccEEEc
Q 045270          250 QLQ-YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG---NIHQLPNNLIYIDF  325 (440)
Q Consensus       250 ~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~L  325 (440)
                      .|+ .+.+....   ..+..+...                    .....++..+.+.+.-...   .+...+++|+.+++
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~--------------------~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L  233 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKA--------------------GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDI  233 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHT--------------------TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred             ccceeEEecCCC---cHHHHHhhc--------------------ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence            444 22222110   011110000                    0012222222222210000   00011345666666


Q ss_pred             cCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCC-EEEcCCCcCCCCCc-hhhhc-cccEEECCCCccc
Q 045270          326 SNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLS-LLDLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQ  402 (440)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~  402 (440)
                      ++|.++ .++...|..+++|+.+++.+| ++.+...+|.+|++|+ .+++.+ .++.++. ++..+ +|+.+++++|.+.
T Consensus       234 ~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          234 SKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             CCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            655555 555555555666666666665 5445555666666666 666655 4555432 22222 3555555555555


Q ss_pred             CCchhhhhcCCCCcEEE
Q 045270          403 GTVPKSIANCKMLEVLN  419 (440)
Q Consensus       403 ~~~~~~~~~l~~L~~L~  419 (440)
                      ...+.+|.++++|+.++
T Consensus       311 ~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          311 TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECTTTTCTTCCCCEEE
T ss_pred             ccchhhhcCCcchhhhc
Confidence            45555555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=7.8e-18  Score=163.28  Aligned_cols=199  Identities=19%  Similarity=0.141  Sum_probs=139.5

Q ss_pred             CCccccceeecCCCCCCCCCC-CcccCcccEEeccCcc-------------cccccCcccccccccceeEEE-ccCcccc
Q 045270          224 SFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQ-------------ISREIPNWIWRVSVVGLHCLN-LSHNLLV  288 (440)
Q Consensus       224 ~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~~L~~L~-l~~~~~~  288 (440)
                      ...+.|+.|++++|.++.+|. +..++.|+.|++++|.             ..+..|..+..+  ++|+.|+ ++.+.+ 
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l--~~L~~L~~l~~n~~-  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF--STLKAVDPMRAAYL-  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH--HHHHHHCGGGHHHH-
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH--HhcccCcchhhccc-
Confidence            456778888888888887777 7788888888886653             122222222211  1233333 222221 


Q ss_pred             cccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCC
Q 045270          289 GFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATT  368 (440)
Q Consensus       289 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  368 (440)
                              ..|+.+.+.+|.+....   +..|+.|++++|.++ .+|. +.. +++|+.|++++|.++ .+|..+..+++
T Consensus       423 --------~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~-~lp~-~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~  487 (567)
T 1dce_A          423 --------DDLRSKFLLENSVLKME---YADVRVLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLR-ALPPALAALRC  487 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHHH---HTTCSEEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             --------chhhhhhhhcccccccC---ccCceEEEecCCCCC-CCcC-ccc-cccCcEeecCccccc-ccchhhhcCCC
Confidence                    12222333333333211   135889999999998 5776 544 899999999999999 67889999999


Q ss_pred             CCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCc-hhhhhcCCCCcEEECCCCcccccCccc---ccCCCCCC
Q 045270          369 LSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTV-PKSIANCKMLEVLNLGNNQFSDKFPCW---LYDAPSLH  440 (440)
Q Consensus       369 L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~---l~~~~~L~  440 (440)
                      |+.|++++|.++.+|.....++|+.|++++|.+++.. |..++.+++|+.|++++|++++..|..   +..+|+|+
T Consensus       488 L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          488 LEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             CCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            9999999999999884444667999999999999886 899999999999999999998876532   23356553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3.1e-15  Score=121.86  Aligned_cols=132  Identities=24%  Similarity=0.246  Sum_probs=59.9

Q ss_pred             CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270           47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA  126 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L  126 (440)
                      ++|++|++++|.+....+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.++. .+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEE
Confidence            44444444444443112444444444555555554444422  3444444555555555544432222 23344555555


Q ss_pred             EecCCccCCCCC--ccccccccccccCcccccEEEcCCCccCCccc---cccccccCccEEeccccccc
Q 045270          127 VLSDNSLNGSIP--RSMFEFPIFSNASSSALDTLDLSGNRLRGSIP---VSVFELKKLTSLLLSSNNLH  190 (440)
Q Consensus       127 ~l~~~~~~~~~~--~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~  190 (440)
                      ++++|.++ .++  ..+..        +++|++|++++|.+....+   ..+..+++|++|++.+|.+.
T Consensus       101 ~Ls~N~l~-~~~~~~~l~~--------l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLK-DISTLEPLKK--------LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCC-SSGGGGGGSS--------CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccC-cchhHHHHhc--------CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            55555444 222  22222        2455555555555552222   24555566666666655543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=7.9e-15  Score=122.03  Aligned_cols=129  Identities=23%  Similarity=0.308  Sum_probs=92.6

Q ss_pred             eEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcC
Q 045270          300 RFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF  379 (440)
Q Consensus       300 ~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i  379 (440)
                      ++++++++++.......+.++++|++++|.+.+..+...+..+++|++|++++|.+++..+..|..+++|++|++++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            45555555555444444557788888888776333333344478888888888888877777888888888888888888


Q ss_pred             CCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270          380 MKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK  428 (440)
Q Consensus       380 ~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  428 (440)
                      +.++...+  ..+|+.|++++|++++..|..|..+++|+.|++++|++...
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            77754322  45688888888888877777888888888888888887644

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=1.2e-15  Score=152.66  Aligned_cols=204  Identities=15%  Similarity=0.105  Sum_probs=110.4

Q ss_pred             CCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEec-----CCccCCCccccchhcCCCCcEEEccc
Q 045270            7 TDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLA-----RTSFNGTQIPSKLANISSLTYLNLSD   81 (440)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~~~~~l~~~~~~l~~L~~L~l~~   81 (440)
                      +....|.++.++. ++++.|+|+++.+... +.  .+.....|+.+.+.     .+.+.  ..+..+..++.|++|+|++
T Consensus       160 ~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~~--~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~  233 (727)
T 4b8c_D          160 TPSGTATNSAVST-PLTPKIELFANGKDEA-NQ--ALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSN  233 (727)
T ss_dssp             --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred             CccccCCCceecC-CccceEEeeCCCCCcc-hh--hHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCC
Confidence            4456677666655 6799999999887653 22  33333344443332     23332  1467788999999999999


Q ss_pred             CccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcC
Q 045270           82 AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLS  161 (440)
Q Consensus        82 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~  161 (440)
                      |.+. .+|..+..+++|++|+|++|.++ .++. .+..+++|+.|+|++|.++ .+|..++.+        ++|++|+++
T Consensus       234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l--------~~L~~L~L~  301 (727)
T 4b8c_D          234 LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSC--------FQLKYFYFF  301 (727)
T ss_dssp             SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGG--------TTCSEEECC
T ss_pred             CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCC--------CCCCEEECC
Confidence            9998 78888889999999999999998 6654 5799999999999999998 889888766        689999999


Q ss_pred             CCccCCccccccccccCccEEeccccccccccchhhHhcCC-CCcEEEcCCCcccccCCccccCCccccceeecCCC
Q 045270          162 GNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC  237 (440)
Q Consensus       162 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  237 (440)
                      +|.+. .+|..|..+++|+.|++++|.+.+..+ ..+..+. .+..+++.+|.++...+       ..|+.|++..+
T Consensus       302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n  369 (727)
T 4b8c_D          302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL-KILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD  369 (727)
T ss_dssp             SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH-HHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred             CCCCC-ccChhhhcCCCccEEeCCCCccCCCCh-HHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence            99997 788889999999999999999975443 3333221 12235566666643332       33556666555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=4.3e-15  Score=118.35  Aligned_cols=128  Identities=20%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270           47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA  126 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L  126 (440)
                      ++|++|++++|.+....+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.++. .+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEE
Confidence            34444444444443112344444444444444444444422  3344444444444444444432222 23344445555


Q ss_pred             EecCCccCCC-CCccccccccccccCcccccEEEcCCCccCCccc---cccccccCccEEecc
Q 045270          127 VLSDNSLNGS-IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIP---VSVFELKKLTSLLLS  185 (440)
Q Consensus       127 ~l~~~~~~~~-~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  185 (440)
                      ++++|.+++. .+..+..+        ++|++|++++|.+.+..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l--------~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKL--------ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGC--------TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhC--------CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5555444421 11233222        455555555555542222   244555556555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=2.3e-14  Score=130.14  Aligned_cols=100  Identities=20%  Similarity=0.163  Sum_probs=76.1

Q ss_pred             ccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccc-eeecCCCCCCCCCC--CcccCccc
Q 045270          176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLE-LLNLASCKLREIPN--LKNQSQLQ  252 (440)
Q Consensus       176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~l~~--~~~~~~L~  252 (440)
                      +++|+.+++++|.+. .++...|.++.+|+.+++.++ +....... |..+++|+ .+.+.+ .++.++.  |..|++|+
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a-F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRV-FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTT-TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHH-hhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            678888888888877 777788888888999988887 55554444 77888888 888888 7777765  88888999


Q ss_pred             EEeccCcccccccCcccccccccceeEEE
Q 045270          253 YLYLSENQISREIPNWIWRVSVVGLHCLN  281 (440)
Q Consensus       253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  281 (440)
                      .++++++.+....+..|..+  ++|+.+.
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~--~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNG--VPSKLIY  327 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTT--CCCCEEE
T ss_pred             EEEeCCCccCccchhhhcCC--cchhhhc
Confidence            99988888776555566443  3476664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.55  E-value=2.2e-13  Score=126.88  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=56.5

Q ss_pred             cccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc-hhhhc-cccEEECCCCcccCCchhhhhcCCCCc
Q 045270          339 GNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLE  416 (440)
Q Consensus       339 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~  416 (440)
                      +..+++|+.+.+.++ ++.+...+|.+|++|+.++|.. .++.++. ++..+ +|+.+.+..+ ++.....+|.+|++|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            333566666666543 3334455666666777776643 3555533 33332 3777777655 5545566788888888


Q ss_pred             EEECCCCcccccCcccccCCCCCC
Q 045270          417 VLNLGNNQFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       417 ~L~l~~n~~~~~~~~~l~~~~~L~  440 (440)
                      .+++..+-  ..+...|.+|++||
T Consensus       370 ~i~lp~~~--~~~~~~F~~c~~L~  391 (394)
T 4fs7_A          370 KVELPKRL--EQYRYDFEDTTKFK  391 (394)
T ss_dssp             EEEEEGGG--GGGGGGBCTTCEEE
T ss_pred             EEEECCCC--EEhhheecCCCCCc
Confidence            88876542  22345577776653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=4.2e-14  Score=117.59  Aligned_cols=124  Identities=23%  Similarity=0.273  Sum_probs=91.7

Q ss_pred             EEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCC
Q 045270          301 FIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFM  380 (440)
Q Consensus       301 ~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~  380 (440)
                      .++++++++.......++++++|++++|.+. .+|..+.. +++|+.|++++|.+++..+..|..+++|++|++++|.++
T Consensus        14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            4555555555444445567888888888877 67754444 788888888888888777777888888888888888888


Q ss_pred             CCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCccc
Q 045270          381 KKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS  426 (440)
Q Consensus       381 ~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  426 (440)
                      .++...+  ..+|+.|++++|.++...+..|..+++|+.|++++|++.
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            8755333  356888888888888666667888888888888888775

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=4e-14  Score=116.27  Aligned_cols=130  Identities=18%  Similarity=0.248  Sum_probs=88.5

Q ss_pred             eEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcC
Q 045270          300 RFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF  379 (440)
Q Consensus       300 ~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i  379 (440)
                      +.++++++++.......++++++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            34445555554444444567777777777776 45554444477888888888877766666677778888888888887


Q ss_pred             CCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCc
Q 045270          380 MKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP  430 (440)
Q Consensus       380 ~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  430 (440)
                      +.++...+  ..+|+.|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            77755433  4568888888888876666667777888888888887765443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=2.2e-14  Score=114.19  Aligned_cols=119  Identities=22%  Similarity=0.246  Sum_probs=60.2

Q ss_pred             CCccEEEccCCccc-ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCC-CCchhh-hccccEE
Q 045270          318 NNLIYIDFSNNNFT-SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFL-NCLLQTL  394 (440)
Q Consensus       318 ~~L~~L~L~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~-~~~L~~L  394 (440)
                      +++++|++++|.+. +.+|..+.. +++|+.|++++|.+++.  ..+..+++|++|++++|.+.+ ++..+. .++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34555555555554 344443333 55555555555555533  445555555555555555555 233222 3445555


Q ss_pred             ECCCCcccCC-chhhhhcCCCCcEEECCCCcccccCc---ccccCCCCC
Q 045270          395 DLNGNRLQGT-VPKSIANCKMLEVLNLGNNQFSDKFP---CWLYDAPSL  439 (440)
Q Consensus       395 ~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L  439 (440)
                      ++++|.+++. .+..+..+++|+.|++++|++++..+   ..+..+++|
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            5555555542 22445555556666666655554444   344444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=3e-14  Score=115.90  Aligned_cols=132  Identities=22%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             CCCCcEEEcccCccc-cCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc
Q 045270           71 ISSLTYLNLSDAGFA-GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN  149 (440)
Q Consensus        71 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~  149 (440)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.   ..+..+++|++|++++|.+.+.+|..+..+     
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----   94 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKL-----   94 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHC-----
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhC-----
Confidence            477888888888886 56777778888888888888887743   357778888888888888875555544333     


Q ss_pred             cCcccccEEEcCCCccCCccc--cccccccCccEEeccccccccccch---hhHhcCCCCcEEEcCCCccc
Q 045270          150 ASSSALDTLDLSGNRLRGSIP--VSVFELKKLTSLLLSSNNLHGTVQL---DKILNLGNLAKLDLSYNSLA  215 (440)
Q Consensus       150 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~  215 (440)
                         ++|++|++++|.+.+ ++  ..+..+++|++|++++|.+. ..+.   ..+..+++|+.|++++|.+.
T Consensus        95 ---~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           95 ---PNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ---TTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ---CCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence               577888888887763 33  56667777777777777775 3332   35666677777777666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=7.4e-14  Score=114.64  Aligned_cols=129  Identities=18%  Similarity=0.240  Sum_probs=92.0

Q ss_pred             EEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCC
Q 045270           25 GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS  104 (440)
Q Consensus        25 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~  104 (440)
                      .++++++.++. +|.  .  ..++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        11 ~l~~~~~~l~~-~p~--~--~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           11 EIRCNSKGLTS-VPT--G--IPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             EEECCSSCCSS-CCT--T--CCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEecCCCCcc-CCC--C--CCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            34444555543 222  2  236888889988888654 44567888889999998888886555667888889999999


Q ss_pred             CCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc
Q 045270          105 FNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS  168 (440)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~  168 (440)
                      +|.++ .++...+..+++|++|++++|.++ .+|....       ..+++|++|++++|++.+.
T Consensus        85 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~-------~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIF-------DRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTT-------TTCTTCCEEECCSSCBCCC
T ss_pred             CCCcc-ccCHHHhhCCcccCEEECcCCcce-EeCHHHh-------cCCcccCEEEecCCCeecc
Confidence            98888 444446788889999999998887 4444432       2236888999998887743

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.49  E-value=1.6e-13  Score=114.06  Aligned_cols=132  Identities=23%  Similarity=0.288  Sum_probs=84.8

Q ss_pred             CeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcc-cccccccCceecCCCCcccCccchhhhcccccceEEEe
Q 045270           50 RSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPL-QISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVL  128 (440)
Q Consensus        50 ~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l  128 (440)
                      +.++++++.+..  +|..+.  .+|++|++++|.+.+..+. .+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus        11 ~~l~~s~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcCc--CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEEC
Confidence            677777777633  565554  3777777777777644433 36777777777777777763333 35667777777777


Q ss_pred             cCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccc
Q 045270          129 SDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ  194 (440)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  194 (440)
                      ++|.+++..+..+..+        ++|++|++++|.+.+..|..+..+++|++|++++|.+....+
T Consensus        86 s~N~l~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           86 GENKIKEISNKMFLGL--------HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSCCCCEECSSSSTTC--------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCccCHHHhcCC--------CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            7777765444444333        567777777777765556666666677777777666654433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=6.3e-13  Score=110.43  Aligned_cols=126  Identities=23%  Similarity=0.365  Sum_probs=76.6

Q ss_pred             EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270           24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF  103 (440)
Q Consensus        24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  103 (440)
                      ++++++++.++. +|.  .+  .++|++|++++|.+..  +|..|..+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus        13 ~~l~~~~~~l~~-ip~--~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPK--GI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCSS-CCS--CC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCCc-CCC--CC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            356666666653 333  22  2567777777777752  5667777777777777777777555566777777777777


Q ss_pred             CCCcccCccchhhhcccccceEEEecCCccCCCCCc-cccccccccccCcccccEEEcCCCccC
Q 045270          104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPR-SMFEFPIFSNASSSALDTLDLSGNRLR  166 (440)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~l~~~~~~~L~~L~l~~~~~~  166 (440)
                      ++|.++ .++...+..+++|++|++++|.++ .+|. .+..+        ++|+.|++++|++.
T Consensus        86 s~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l--------~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           86 SYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDL--------SALSHLAIGANPLY  139 (193)
T ss_dssp             CSSCCC-BCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTC--------TTCCEEECCSSCEE
T ss_pred             CCCccC-EeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcC--------ccccEEEeCCCCee
Confidence            777766 333335666666666666666665 3332 23222        45556666555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.8e-13  Score=112.19  Aligned_cols=133  Identities=17%  Similarity=0.158  Sum_probs=96.5

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcC-CCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhccc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANI-SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHL  120 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l  120 (440)
                      .+..+++|++|++++|.+..  ++. +..+ ++|++|++++|.+.+.  ..+..+++|++|++++|.+. .++...+..+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l   87 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL   87 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred             hcCCcCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence            57788888888888888763  443 4444 4888888888888743  57788888888888888887 4444446788


Q ss_pred             ccceEEEecCCccCCCCCc--cccccccccccCcccccEEEcCCCccCCccccc----cccccCccEEeccccccc
Q 045270          121 LNLVYAVLSDNSLNGSIPR--SMFEFPIFSNASSSALDTLDLSGNRLRGSIPVS----VFELKKLTSLLLSSNNLH  190 (440)
Q Consensus       121 ~~L~~L~l~~~~~~~~~~~--~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~  190 (440)
                      ++|++|++++|.+. .+|.  .+..        +++|++|++++|++. ..+..    +..+++|+.|++++|...
T Consensus        88 ~~L~~L~L~~N~i~-~~~~~~~l~~--------l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELILTNNSLV-ELGDLDPLAS--------LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEECCSCCCC-CGGGGGGGGG--------CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEECCCCcCC-cchhhHhhhc--------CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88888888888885 4554  3433        367888888888876 45543    667788888888777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=4.1e-14  Score=141.54  Aligned_cols=169  Identities=20%  Similarity=0.261  Sum_probs=112.5

Q ss_pred             CceEEEeeccceeecc---------cCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCccc
Q 045270           21 GHVIGLDLSTESISGG---------IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQ   91 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~   91 (440)
                      ..++.++|+.+.+.+.         .+.  .+..++.|+.|++++|.+.  .++..+..+++|++|+|++|.+. .+|..
T Consensus       191 ~~l~~l~Ls~~~i~~~~~~~n~~~~~~~--~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~  265 (727)
T 4b8c_D          191 ALLQHKKLSQYSIDEDDDIENRMVMPKD--SKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAE  265 (727)
T ss_dssp             ---------------------------------CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGG
T ss_pred             hHhhcCccCcccccCccccccceecChh--hhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChh
Confidence            3445555555554432         233  6889999999999999986  37888889999999999999998 88999


Q ss_pred             ccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccc
Q 045270           92 ISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV  171 (440)
Q Consensus        92 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~  171 (440)
                      |.++++|++|+|++|.++ .++. .++.+++|++|+|++|.++ .+|..++.+        ++|++|++++|.+.+..|.
T Consensus       266 ~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-~lp~~~~~l--------~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          266 IKNLSNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-TLPWEFGNL--------CNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             GGGGTTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-CCCSSTTSC--------TTCCCEECTTSCCCSHHHH
T ss_pred             hhCCCCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-ccChhhhcC--------CCccEEeCCCCccCCCChH
Confidence            999999999999999998 5554 4899999999999999997 888887655        7999999999999877776


Q ss_pred             ccccccC-ccEEeccccccccccchhhHhcCCCCcEEEcCCC
Q 045270          172 SVFELKK-LTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN  212 (440)
Q Consensus       172 ~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  212 (440)
                      .+..... ...+++.+|.+.+.++       ..|+.|+++.+
T Consensus       335 ~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n  369 (727)
T 4b8c_D          335 ILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred             HHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence            6644321 2235566666654333       23455555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2.3e-13  Score=111.56  Aligned_cols=129  Identities=20%  Similarity=0.187  Sum_probs=91.5

Q ss_pred             CCceeEEEcCCccccCc--ccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEE
Q 045270          296 IPALRFIDLSSHQLRGN--IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLD  373 (440)
Q Consensus       296 ~~~L~~L~l~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  373 (440)
                      ++++++|++++|++...  .....++|+.|++++|.+.+ + ..+. .+++|++|++++|.+++..+..+..+++|++|+
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c-cccc-cCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            44455555555544422  11123477788888887773 3 2333 388999999999999866556668899999999


Q ss_pred             cCCCcCCCCCc--hhh-hccccEEECCCCcccCCchh---hhhcCCCCcEEECCCCcccc
Q 045270          374 LSNNSFMKKSD--AFL-NCLLQTLDLNGNRLQGTVPK---SIANCKMLEVLNLGNNQFSD  427 (440)
Q Consensus       374 l~~n~i~~~~~--~~~-~~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l~~n~~~~  427 (440)
                      +++|.+..++.  .+. .++|+.|++++|++......   .+..+++|+.|++++|...+
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999988765  222 45699999999999854333   58899999999999997754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=5.7e-12  Score=116.84  Aligned_cols=239  Identities=17%  Similarity=0.189  Sum_probs=145.8

Q ss_pred             cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceee
Q 045270          154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN  233 (440)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  233 (440)
                      +|+.+.+..+ +.......|.+ .+|+.+.+.. .+. .+....|.+|.+|+.+++..+.++...... |. +..|+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a-F~-~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPAST-FV-YAGIEEVL  209 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTT-TT-TCCCSEEE
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhh-Ee-ecccCEEE
Confidence            6777777655 44233344555 4688887775 444 556667778888888888877776665555 33 46788887


Q ss_pred             cCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC
Q 045270          234 LASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG  311 (440)
Q Consensus       234 l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  311 (440)
                      +..+ ++.++.  |..+++|+.+++..+ +.......|..   .+|+.+.+.+ .+..+.                   .
T Consensus       210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~---~~L~~i~lp~-~i~~I~-------------------~  264 (401)
T 4fdw_A          210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE---SGITTVKLPN-GVTNIA-------------------S  264 (401)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT---CCCSEEEEET-TCCEEC-------------------T
T ss_pred             eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc---CCccEEEeCC-CccEEC-------------------h
Confidence            7643 665555  777778888877653 33222333322   2355555532 222221                   1


Q ss_pred             cccCCCCCccEEEccCCccc----ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-Cchh
Q 045270          312 NIHQLPNNLIYIDFSNNNFT----SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAF  386 (440)
Q Consensus       312 ~~~~~~~~L~~L~L~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~  386 (440)
                      ..+..+++|+.+.+.++.+.    ..++...+..+++|+.+.+.+ .++.+...+|.+|++|+.+.|..+ ++.+ ..++
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence            22223345555555444332    135555666678888888874 466566677888888888888544 6665 3344


Q ss_pred             hhccccEEECCCCcccCCchhhhhcCC-CCcEEECCCCcc
Q 045270          387 LNCLLQTLDLNGNRLQGTVPKSIANCK-MLEVLNLGNNQF  425 (440)
Q Consensus       387 ~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~  425 (440)
                      ..++|+.+++.+|.........|..++ +++.|.+..+.+
T Consensus       343 ~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          343 NNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            455788888888877766666777774 677888776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=5e-12  Score=117.20  Aligned_cols=199  Identities=14%  Similarity=0.187  Sum_probs=126.8

Q ss_pred             ccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEE
Q 045270          228 MLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFID  303 (440)
Q Consensus       228 ~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~  303 (440)
                      +|+.+.+.. .++.++.  |..|++|+.+++..|.+.......|.   ..+|+.+.+..+ +..+...  ..|++|+.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence            355555543 3443333  55555555555555544432222222   133555555432 3333222  3456666666


Q ss_pred             cCCcc--ccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEeccccccc-----ccchhhhhccCCCCEEEcCC
Q 045270          304 LSSHQ--LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT-----GIIPASLCNATTLSLLDLSN  376 (440)
Q Consensus       304 l~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~L~~L~l~~  376 (440)
                      +..+-  +....+.. .+|+.+.+. +.++ .++...+..+++|+.+++.++.+.     .+...+|.+|++|+.+.+. 
T Consensus       233 l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-  308 (401)
T 4fdw_A          233 IPENVSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-  308 (401)
T ss_dssp             CCTTCCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred             cCCCccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence            65431  11122222 578888885 3455 677777777999999999888664     4667889999999999998 


Q ss_pred             CcCCCCCchhh-h-ccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCC
Q 045270          377 NSFMKKSDAFL-N-CLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAP  437 (440)
Q Consensus       377 n~i~~~~~~~~-~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~  437 (440)
                      +.++.++...+ . .+|+.+.|..+ ++.....+|.++ +|+.+++.+|......+..|.+++
T Consensus       309 ~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          309 ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence            45888755444 4 46999999665 666777899999 999999999988776667777664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.38  E-value=2.1e-11  Score=113.42  Aligned_cols=307  Identities=13%  Similarity=0.133  Sum_probs=189.7

Q ss_pred             cccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCC
Q 045270           84 FAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN  163 (440)
Q Consensus        84 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~  163 (440)
                      ++.....+|.++.+|+.+.+..+ ++ .+...+|..+++|+.+++..+ ++ .++...+       ..|..|+.+.+..+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF-------~~c~~L~~i~~p~~  127 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VK-MIGRCTF-------SGCYALKSILLPLM  127 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTT-------TTCTTCCCCCCCTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ce-Eccchhh-------cccccchhhcccCc
Confidence            45455677889999999999754 44 666678888999999977644 32 2222222       45567777666543


Q ss_pred             ccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC
Q 045270          164 RLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP  243 (440)
Q Consensus       164 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  243 (440)
                       +.......|.++..+. ..+... .. .+....|.++.+|+.+.+..+. ..... ..+..+.+|+.+.+..+ ++.++
T Consensus       128 -l~~i~~~aF~~~~~~~-~~~~~~-~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~-~~F~~c~~L~~i~l~~~-~~~I~  200 (394)
T 4fs7_A          128 -LKSIGVEAFKGCDFKE-ITIPEG-VT-VIGDEAFATCESLEYVSLPDSM-ETLHN-GLFSGCGKLKSIKLPRN-LKIIR  200 (394)
T ss_dssp             -CCEECTTTTTTCCCSE-EECCTT-CC-EECTTTTTTCTTCCEEECCTTC-CEECT-TTTTTCTTCCBCCCCTT-CCEEC
T ss_pred             -eeeecceeeecccccc-cccCcc-cc-ccchhhhcccCCCcEEecCCcc-ceecc-ccccCCCCceEEEcCCC-ceEeC
Confidence             2212333444444333 322222 11 3445567888888888886543 22222 23667778888887665 45444


Q ss_pred             C--CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCcc
Q 045270          244 N--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLI  321 (440)
Q Consensus       244 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~  321 (440)
                      .  +..+..|+.+.+..+...  +.....  ...+++.+.+....                    ..+.......+..++
T Consensus       201 ~~~F~~~~~L~~i~~~~~~~~--i~~~~~--~~~~l~~i~ip~~~--------------------~~i~~~~f~~~~~l~  256 (394)
T 4fs7_A          201 DYCFAECILLENMEFPNSLYY--LGDFAL--SKTGVKNIIIPDSF--------------------TELGKSVFYGCTDLE  256 (394)
T ss_dssp             TTTTTTCTTCCBCCCCTTCCE--ECTTTT--TTCCCCEEEECTTC--------------------CEECSSTTTTCSSCC
T ss_pred             chhhccccccceeecCCCceE--eehhhc--ccCCCceEEECCCc--------------------eecccccccccccce
Confidence            4  777777777776554221  111111  11224444432211                    011222333345677


Q ss_pred             EEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc-hhhhc-cccEEECCCC
Q 045270          322 YIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD-AFLNC-LLQTLDLNGN  399 (440)
Q Consensus       322 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n  399 (440)
                      .+.+..+..  .+....+..++.++.+......+.   ...|..+.+|+.+.+..+ ++.++. ++..+ +|+.+++..+
T Consensus       257 ~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~  330 (394)
T 4fs7_A          257 SISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL  330 (394)
T ss_dssp             EEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             eEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence            777765433  344555555888888887765433   356889999999999764 777744 44443 5999999754


Q ss_pred             cccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270          400 RLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH  440 (440)
Q Consensus       400 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  440 (440)
                       ++.....+|.+|++|+.+++..+ +.......|.+|++|+
T Consensus       331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence             66677789999999999999877 7777788899999885

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=3.6e-12  Score=103.55  Aligned_cols=102  Identities=25%  Similarity=0.317  Sum_probs=55.1

Q ss_pred             cEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCC
Q 045270          321 IYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNG  398 (440)
Q Consensus       321 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~  398 (440)
                      +.++++++.++ .+|..+   .+.+++|++++|.+++..+..|..+++|++|++++|+++.++...+  ..+|+.|++++
T Consensus        12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            44555555554 444433   2455555555555555555555555555555555555555543322  33455556655


Q ss_pred             CcccCCchhhhhcCCCCcEEECCCCccc
Q 045270          399 NRLQGTVPKSIANCKMLEVLNLGNNQFS  426 (440)
Q Consensus       399 n~~~~~~~~~~~~l~~L~~L~l~~n~~~  426 (440)
                      |++....+..|..+++|+.|++++|++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555544455555666666666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=6.4e-14  Score=117.25  Aligned_cols=125  Identities=18%  Similarity=0.213  Sum_probs=68.0

Q ss_pred             cCCceeEEEcCCccccCcccCC--CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEE
Q 045270          295 SIPALRFIDLSSHQLRGNIHQL--PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL  372 (440)
Q Consensus       295 ~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  372 (440)
                      .+++|++|++++|.+.+.. ..  +++|+.|++++|.+. .+|..+.. +++|++|++++|.+++ .+ .+..+++|++|
T Consensus        46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-LS-GIEKLVNLRVL  120 (198)
T ss_dssp             HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred             cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhc-CCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence            3566666666666655422 11  356666666666665 45543332 4566666666666654 23 45556666666


Q ss_pred             EcCCCcCCCCCc--hh-hhccccEEECCCCcccCCchh----------hhhcCCCCcEEECCCCccc
Q 045270          373 DLSNNSFMKKSD--AF-LNCLLQTLDLNGNRLQGTVPK----------SIANCKMLEVLNLGNNQFS  426 (440)
Q Consensus       373 ~l~~n~i~~~~~--~~-~~~~L~~L~l~~n~~~~~~~~----------~~~~l~~L~~L~l~~n~~~  426 (440)
                      ++++|.+..++.  .+ ..++|+.|++++|++.+..|.          .+..+++|+.|+  +++++
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            666666655433  11 133466666666666544322          255566666654  55554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=7.3e-12  Score=102.03  Aligned_cols=101  Identities=24%  Similarity=0.301  Sum_probs=46.9

Q ss_pred             EEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCC
Q 045270          322 YIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGN  399 (440)
Q Consensus       322 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n  399 (440)
                      .++++++.+. .+|..+   .+.|+.|++++|.+++..+..|..+++|++|++++|+++.++...+  ..+|+.|++++|
T Consensus        16 ~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3444444443 344332   2344455555555444444444445555555555555544433322  233555555555


Q ss_pred             cccCCchhhhhcCCCCcEEECCCCccc
Q 045270          400 RLQGTVPKSIANCKMLEVLNLGNNQFS  426 (440)
Q Consensus       400 ~~~~~~~~~~~~l~~L~~L~l~~n~~~  426 (440)
                      ++....+..|..+++|+.|++++|++.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            555443334555555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=5.5e-14  Score=117.64  Aligned_cols=131  Identities=21%  Similarity=0.237  Sum_probs=73.3

Q ss_pred             ccCCCCeEEecCCccCCC-----ccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcc
Q 045270           45 SLHYLRSLNLARTSFNGT-----QIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEH  119 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~  119 (440)
                      ....++.++++.+.+...     .+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .++. .+..
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAV   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhc
Confidence            334444444444444322     123366667777777777776663 55 6666677777777777666 3332 3455


Q ss_pred             cccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccc--cccccccCccEEeccccccc
Q 045270          120 LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIP--VSVFELKKLTSLLLSSNNLH  190 (440)
Q Consensus       120 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~  190 (440)
                      +++|++|++++|.++ .+| .+..        +++|++|++++|.+.. .+  ..+..+++|++|++++|.+.
T Consensus        92 ~~~L~~L~L~~N~l~-~l~-~~~~--------l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           92 ADTLEELWISYNQIA-SLS-GIEK--------LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHCSEEEEEEEECC-CHH-HHHH--------HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCcCCEEECcCCcCC-cCC-cccc--------CCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence            566666666666665 233 2322        2466666666666552 22  24555666666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.28  E-value=1.1e-09  Score=101.97  Aligned_cols=102  Identities=16%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc-hhhhc-cccEEE
Q 045270          318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD-AFLNC-LLQTLD  395 (440)
Q Consensus       318 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~-~L~~L~  395 (440)
                      ..|+.+.+.....  .++...+..++.|+.+.+. +.++.+...+|.+|.+|+.+.|..+ ++.++. ++..+ +|+.+.
T Consensus       265 ~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          265 AYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             SSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            3444444433221  2333333335555555553 2233344445555666666665432 444422 33332 366666


Q ss_pred             CCCCcccCCchhhhhcCCCCcEEECCCCc
Q 045270          396 LNGNRLQGTVPKSIANCKMLEVLNLGNNQ  424 (440)
Q Consensus       396 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  424 (440)
                      |..+ ++.....+|.+|++|+.+++.++.
T Consensus       341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          341 IPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             ECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             ECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            5432 444445566666666666666553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.28  E-value=1.6e-11  Score=99.64  Aligned_cols=104  Identities=19%  Similarity=0.240  Sum_probs=63.5

Q ss_pred             EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270           24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF  103 (440)
Q Consensus        24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  103 (440)
                      ++++++++.++. +|.  .+  .+.|++|++++|.+... .+..|.++++|++|++++|.+.+..+..|..+++|++|+|
T Consensus        12 ~~l~~s~n~l~~-ip~--~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPT--GI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TEEECTTSCCSS-CCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCc-cCc--cC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            456666666654 333  22  26677777777766554 4556666777777777777766444444566667777777


Q ss_pred             CCCcccCccchhhhcccccceEEEecCCccC
Q 045270          104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLN  134 (440)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  134 (440)
                      ++|.++ .++...+..+++|++|++++|.+.
T Consensus        86 ~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 NDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            776666 333334566666666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=2.2e-11  Score=99.14  Aligned_cols=104  Identities=14%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270           24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF  103 (440)
Q Consensus        24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  103 (440)
                      +.++++++.++. +|.  .+.  ++|++|++++|.+... .+..|.++++|++|++++|.+.+..+..|.++++|++|+|
T Consensus        15 ~~l~~~~n~l~~-iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SEEECCSSCCSS-CCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEEeCCCCCCc-cCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            566777776643 443  232  6777777777776554 4566667777777777777776444444566777777777


Q ss_pred             CCCcccCccchhhhcccccceEEEecCCccC
Q 045270          104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLN  134 (440)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  134 (440)
                      ++|.+. .++...+..+++|++|++++|.+.
T Consensus        89 ~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           89 NDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence            777766 344334666666666666666665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=5.7e-13  Score=122.36  Aligned_cols=167  Identities=19%  Similarity=0.177  Sum_probs=104.3

Q ss_pred             ccCCCCeEEecCCccCCCccccchhc-----CCCCcEEEcccCccccCCcccc-cccccCceecCCCCcccCccchhhh-
Q 045270           45 SLHYLRSLNLARTSFNGTQIPSKLAN-----ISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDFSFNQFSGSISSIRW-  117 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~~~~l~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~-  117 (440)
                      ..++|+.|++++|.+... ....+..     .++|++|+|++|.+.......+ ..+++|++|+|++|.+.+.... .+ 
T Consensus        70 ~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~-~L~  147 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-DLR  147 (372)
T ss_dssp             HHTTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-HHH
T ss_pred             HHhhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-HHH
Confidence            346788888888887543 2223322     2678888888887764333333 3456788888888877633222 22 


Q ss_pred             ----cccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc----cccccccccCccEEecccccc
Q 045270          118 ----EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS----IPVSVFELKKLTSLLLSSNNL  189 (440)
Q Consensus       118 ----~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~  189 (440)
                          ...++|++|++++|.+++.....+....    ..+++|++|++++|.+...    +...+...++|++|++++|.+
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L----~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL----AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH----HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHH----hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence                2357788888888887643222221110    2336788888888877632    244556677888888888887


Q ss_pred             ccccc----hhhHhcCCCCcEEEcCCCcccccC
Q 045270          190 HGTVQ----LDKILNLGNLAKLDLSYNSLAVDE  218 (440)
Q Consensus       190 ~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~  218 (440)
                      . ...    ...+...++|+.|++++|.++...
T Consensus       224 ~-~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          224 G-DTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             C-HHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             C-HHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            6 222    223456688889999888876543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.20  E-value=4.8e-09  Score=97.50  Aligned_cols=325  Identities=16%  Similarity=0.182  Sum_probs=166.6

Q ss_pred             cccccC-CCCeEEecCCccCCCccccchhcCCCCcEEEcccCc---cccCCcccccccccCceecCCCCcccCccchhhh
Q 045270           42 SLFSLH-YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG---FAGHIPLQISSMARLVALDFSFNQFSGSISSIRW  117 (440)
Q Consensus        42 ~~~~l~-~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~  117 (440)
                      +|.+++ .|+.+.+... +... ...+|.++.+|+.+.+..+.   ++.....+|..+.+|+.+.+..+ +. .+...++
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF  133 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF  133 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh
Confidence            677774 5888888543 3332 34678888999999887653   44445667788888888877654 22 4455567


Q ss_pred             cccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhh
Q 045270          118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDK  197 (440)
Q Consensus       118 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  197 (440)
                      ..+.+|+.+.+.....  .++...+       ..|..|+.+.+..+ +. .+.........|+.+.+...-.  .+....
T Consensus       134 ~~c~~L~~i~lp~~~~--~I~~~~F-------~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~~~~--~i~~~a  200 (394)
T 4gt6_A          134 HHCEELDTVTIPEGVT--SVADGMF-------SYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIPAKVT--RIGTNA  200 (394)
T ss_dssp             TTCTTCCEEECCTTCC--EECTTTT-------TTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEECTTCC--EECTTT
T ss_pred             hhhcccccccccceee--eecccce-------ecccccccccccce-ee-EeccccccccceeEEEECCccc--ccccch
Confidence            7777888777654321  2222221       45567777777643 22 2222222345677776664432  334445


Q ss_pred             HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccce
Q 045270          198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGL  277 (440)
Q Consensus       198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  277 (440)
                      |..+..++................ +........-..         .+.....+..+.+.. .+.......|        
T Consensus       201 f~~c~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~ip~-~v~~i~~~aF--------  261 (394)
T 4gt6_A          201 FSECFALSTITSDSESYPAIDNVL-YEKSANGDYALI---------RYPSQREDPAFKIPN-GVARIETHAF--------  261 (394)
T ss_dssp             TTTCTTCCEEEECCSSSCBSSSCE-EEECTTSCEEEE---------ECCTTCCCSEEECCT-TEEEECTTTT--------
T ss_pred             hhhccccceeccccccccccccee-eccccccccccc---------ccccccccceEEcCC-cceEccccee--------
Confidence            666666666655443322111100 000000000000         001111111111111 0100011111        


Q ss_pred             eEEEccCcccccccCCccCCceeEEEcCCcc--ccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccc
Q 045270          278 HCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ--LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL  355 (440)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  355 (440)
                                      ..+..|+.+.+....  +.......+++|+.+.+.. .++ .++...|..+++|+.+.+.++ +
T Consensus       262 ----------------~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v  322 (394)
T 4gt6_A          262 ----------------DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-I  322 (394)
T ss_dssp             ----------------TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-C
T ss_pred             ----------------eecccccEEecccccceecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-c
Confidence                            123344444443221  1122233345666666643 343 566666766888888888754 5


Q ss_pred             cccchhhhhccCCCCEEEcCCCcCCCCCc-hhhhc-cccEEECCCCcccCCchhhhhcCCCCcEEECCCCcc
Q 045270          356 TGIIPASLCNATTLSLLDLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF  425 (440)
Q Consensus       356 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  425 (440)
                      +.+...+|.+|.+|+.+.|.. .++.++. ++..+ +|+.+++.++...   ..++..+.+|+.+.+..+.+
T Consensus       323 ~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          323 TQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             cEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            545667888889999988864 4777744 44443 4899988887543   24677788899888876643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=4.1e-12  Score=116.63  Aligned_cols=117  Identities=20%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             CCCCcEEEcccCccccCCccccccc-----ccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccc
Q 045270           71 ISSLTYLNLSDAGFAGHIPLQISSM-----ARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP  145 (440)
Q Consensus        71 l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  145 (440)
                      ++.|++|++++|.+.......+...     ++|++|+|++|.+.+.........+++|++|++++|.+++.....+....
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4667777877777664333333322     57777777777765333332334456677777777766543333222110


Q ss_pred             cccccCcccccEEEcCCCccCCc----cccccccccCccEEeccccccc
Q 045270          146 IFSNASSSALDTLDLSGNRLRGS----IPVSVFELKKLTSLLLSSNNLH  190 (440)
Q Consensus       146 ~l~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  190 (440)
                         ....+.|++|++++|.+...    ++..+...++|++|++++|.+.
T Consensus       151 ---~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          151 ---LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             ---HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             ---HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence               01224566666666655421    2222334455555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.98  E-value=6.4e-08  Score=89.45  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             cCCceeEEEcCCc--cccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEE
Q 045270          295 SIPALRFIDLSSH--QLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL  372 (440)
Q Consensus       295 ~~~~L~~L~l~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  372 (440)
                      .+..|+.+.+..+  .+.......+.+|+.+.+..+ +. .++...+..+++|+.+.+.++.++.+...+|.+|.+|+.+
T Consensus       238 ~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCCccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            3555666555443  122233344556777777543 33 4555555557777777777776665666677777777777


Q ss_pred             EcCCCcCCCCCc-hhhhc-cccEEECCCCcccCCchhhhhcCCC
Q 045270          373 DLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQGTVPKSIANCKM  414 (440)
Q Consensus       373 ~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~  414 (440)
                      .|..+ ++.++. ++..+ +|+.+.+..+ ++.....+|.++..
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            77543 555533 33343 3777666543 44445556666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.92  E-value=2.7e-09  Score=97.47  Aligned_cols=102  Identities=24%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             EEEcCCc-cccCccc-CCCCCccEEEccC-CcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCC
Q 045270          301 FIDLSSH-QLRGNIH-QLPNNLIYIDFSN-NNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN  377 (440)
Q Consensus       301 ~L~l~~~-~~~~~~~-~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  377 (440)
                      .++.+++ ++..... ...++|++|+|++ |.+. .++...+..+++|+.|+|++|.+++..+..|..+++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            3455555 5554332 1134577777775 7776 444433434777777777777777777777777777777777777


Q ss_pred             cCCCCCchhh-hccccEEECCCCcccC
Q 045270          378 SFMKKSDAFL-NCLLQTLDLNGNRLQG  403 (440)
Q Consensus       378 ~i~~~~~~~~-~~~L~~L~l~~n~~~~  403 (440)
                      ++..++...+ ...|+.|++.+|++..
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCccC
Confidence            7777755443 2237777777777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=3.4e-09  Score=96.77  Aligned_cols=104  Identities=20%  Similarity=0.205  Sum_probs=82.6

Q ss_pred             CeEEecCC-ccCCCccccchhcCCCCcEEEccc-CccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270           50 RSLNLART-SFNGTQIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV  127 (440)
Q Consensus        50 ~~L~l~~~-~~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~  127 (440)
                      ..++++++ .+..  +|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++ ++...|..+++|++|+
T Consensus        11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEe
Confidence            45688777 6643  788 98899999999996 88987777789999999999999999984 4444688999999999


Q ss_pred             ecCCccCCCCCccccccccccccCcccccEEEcCCCccC
Q 045270          128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR  166 (440)
Q Consensus       128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~  166 (440)
                      |++|.++ .+|..++..        ..|+.|++.+|.+.
T Consensus        87 l~~N~l~-~~~~~~~~~--------~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           87 LSFNALE-SLSWKTVQG--------LSLQELVLSGNPLH  116 (347)
T ss_dssp             CCSSCCS-CCCSTTTCS--------CCCCEEECCSSCCC
T ss_pred             CCCCccc-eeCHHHccc--------CCceEEEeeCCCcc
Confidence            9999998 555554432        23888999888876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=4.5e-09  Score=95.59  Aligned_cols=190  Identities=15%  Similarity=0.132  Sum_probs=115.5

Q ss_pred             cccccCCCCeEEecCCccC--------CCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccc
Q 045270           42 SLFSLHYLRSLNLARTSFN--------GTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSIS  113 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~--------~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  113 (440)
                      ++..+++|+.|.+......        ...+...+..+|+|+.|+++++.-. .++. + .+++|++|++..+.+.....
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence            4668899999988654321        1124455677899999999887422 3333 3 37899999999887753322


Q ss_pred             h-hhhcccccceEEEecCC--ccCCC-CCccccccccccccCcccccEEEcCCCccCCccccccc---cccCccEEeccc
Q 045270          114 S-IRWEHLLNLVYAVLSDN--SLNGS-IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF---ELKKLTSLLLSS  186 (440)
Q Consensus       114 ~-~~~~~l~~L~~L~l~~~--~~~~~-~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~  186 (440)
                      . .....+++|++|+|+.+  ...+. ....+...  +....+++|++|++.+|.+....+..+.   .+++|++|+++.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~--l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL--FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG--SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHH--HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            1 12237899999998642  21111 11111111  1113468999999998887633332232   478999999999


Q ss_pred             cccccccc---hhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCC
Q 045270          187 NNLHGTVQ---LDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK  238 (440)
Q Consensus       187 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  238 (440)
                      |.+...-.   ...+..+++|+.|+++.|.++..........+  ...++++++.
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            88763211   11235678999999999987644322211001  3456776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=3.2e-08  Score=90.00  Aligned_cols=183  Identities=16%  Similarity=0.131  Sum_probs=115.4

Q ss_pred             CCCCeEEecCCccCC-C------ccccchhcCCCCcEEEcccCccc---------cCCcccccccccCceecCCCCcccC
Q 045270           47 HYLRSLNLARTSFNG-T------QIPSKLANISSLTYLNLSDAGFA---------GHIPLQISSMARLVALDFSFNQFSG  110 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~-~------~l~~~~~~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~L~~~~~~~  110 (440)
                      ..++.|.+....+.. .      .+.+++.++++|+.|.+.+....         +.+...+..+|+|+.|+|+++.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            456777776554331 1      12445667899999999664321         124455677899999999887311 


Q ss_pred             ccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCC--ccCCc-----ccccc--ccccCccE
Q 045270          111 SISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN--RLRGS-----IPVSV--FELKKLTS  181 (440)
Q Consensus       111 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~  181 (440)
                      .++.  + .+++|++|++..|.+.......+..      ..+++|++|+++.+  ...+.     +...+  ..+++|+.
T Consensus       186 ~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~  256 (362)
T 2ra8_A          186 SIGK--K-PRPNLKSLEIISGGLPDSVVEDILG------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW  256 (362)
T ss_dssp             BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHH------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred             eecc--c-cCCCCcEEEEecCCCChHHHHHHHH------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence            2222  2 3789999999988776433333321      24578999988532  11111     11122  24799999


Q ss_pred             EeccccccccccchhhHh---cCCCCcEEEcCCCcccccCCccc---cCCccccceeecCCCCCC
Q 045270          182 LLLSSNNLHGTVQLDKIL---NLGNLAKLDLSYNSLAVDESSRN---YSFSPMLELLNLASCKLR  240 (440)
Q Consensus       182 L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~l~  240 (440)
                      |.+.+|.+..... ..+.   .+++|+.|+++.|.+........   +..+++|+.|+++.|.++
T Consensus       257 L~L~~~~i~~~~~-~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          257 LGIVDAEEQNVVV-EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             EEEESCTTHHHHH-HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             EeCCCCCCchHHH-HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            9999988763222 2222   47889999999998875432221   245788999999999775

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.71  E-value=2.4e-06  Score=78.76  Aligned_cols=141  Identities=16%  Similarity=0.112  Sum_probs=101.3

Q ss_pred             ccCCceeEEEcCCc--cccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCE
Q 045270          294 YSIPALRFIDLSSH--QLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSL  371 (440)
Q Consensus       294 ~~~~~L~~L~l~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  371 (440)
                      ..+..++.+.+..+  .+.......+..|+.+.+..+ ++ .++...+..+..|+.+.+..+ +.......|.+|++|+.
T Consensus       214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             ccccccceeeeccceeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            34667777777544  122333444678999998765 44 566666766889999998654 54456678999999999


Q ss_pred             EEcCCCcCCCCCc-hhhhc-cccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCC
Q 045270          372 LDLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL  439 (440)
Q Consensus       372 L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  439 (440)
                      +.+.++.++.++. ++..+ +|+.+.|..+ ++.....+|.+|++|+.+.+..+ ++......|.+|..+
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            9999988988854 44443 5999999754 66567789999999999998654 555556667766543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.56  E-value=4.7e-08  Score=78.03  Aligned_cols=85  Identities=8%  Similarity=0.036  Sum_probs=63.2

Q ss_pred             CCcceEecccccccccchhhhhccCCCCEEEcCCCc-CCCCCchhhh------ccccEEECCCCc-ccCCchhhhhcCCC
Q 045270          343 PRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS-FMKKSDAFLN------CLLQTLDLNGNR-LQGTVPKSIANCKM  414 (440)
Q Consensus       343 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~------~~L~~L~l~~n~-~~~~~~~~~~~l~~  414 (440)
                      ..|+.|++++|.+++.-...+..+++|++|++++|. |++.......      ++|++|+|++|. +++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467888888888776666667788888888888885 5554322222      258999998885 88777778888999


Q ss_pred             CcEEECCCCc-ccc
Q 045270          415 LEVLNLGNNQ-FSD  427 (440)
Q Consensus       415 L~~L~l~~n~-~~~  427 (440)
                      |+.|++++|+ +++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            9999999985 443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.48  E-value=2.2e-08  Score=82.18  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=32.2

Q ss_pred             ccccCCCCeEEecCC-ccCCCc---cccchhcCCCCcEEEcccCccccC----CcccccccccCceecCCCCccc
Q 045270           43 LFSLHYLRSLNLART-SFNGTQ---IPSKLANISSLTYLNLSDAGFAGH----IPLQISSMARLVALDFSFNQFS  109 (440)
Q Consensus        43 ~~~l~~L~~L~l~~~-~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~  109 (440)
                      +...+.|++|++++| .+....   +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            445566666666665 543321   233344455566666666555422    2222333345555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=6.4e-08  Score=79.38  Aligned_cols=71  Identities=10%  Similarity=0.031  Sum_probs=42.6

Q ss_pred             ccchhcCCCCcEEEcccC-ccccC----CcccccccccCceecCCCCcccCccc---hhhhcccccceEEEecCCccCC
Q 045270           65 PSKLANISSLTYLNLSDA-GFAGH----IPLQISSMARLVALDFSFNQFSGSIS---SIRWEHLLNLVYAVLSDNSLNG  135 (440)
Q Consensus        65 ~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~  135 (440)
                      ...+...+.|++|+|++| .+...    +...+...+.|++|+|++|.+.+...   ...+...+.|++|++++|.+.+
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            345566788888888887 66532    33444556777777777777653221   1123444566666666666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=1.6e-07  Score=75.01  Aligned_cols=83  Identities=12%  Similarity=0.173  Sum_probs=41.1

Q ss_pred             CCCeEEecCCccCCCccccchhcCCCCcEEEcccCc-cccCCccccccc----ccCceecCCCCc-ccCccchhhhcccc
Q 045270           48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG-FAGHIPLQISSM----ARLVALDFSFNQ-FSGSISSIRWEHLL  121 (440)
Q Consensus        48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~L~~~~-~~~~~~~~~~~~l~  121 (440)
                      .|++||+++|.++.. ....+.++++|++|+|++|. +++..-..++.+    ++|++|+|++|. +++.. ...+..++
T Consensus        62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred             eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence            455566655554443 23344555666666665553 443222333332    346666666653 33222 12345556


Q ss_pred             cceEEEecCCc
Q 045270          122 NLVYAVLSDNS  132 (440)
Q Consensus       122 ~L~~L~l~~~~  132 (440)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            66666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=1.7e-06  Score=74.52  Aligned_cols=78  Identities=26%  Similarity=0.264  Sum_probs=54.7

Q ss_pred             CCCcceEeccccccccc--chhhhhccCCCCEEEcCCCcCCCCCchhhhc--cccEEECCCCcccCCch-------hhhh
Q 045270          342 MPRLRYFCAANNGLTGI--IPASLCNATTLSLLDLSNNSFMKKSDAFLNC--LLQTLDLNGNRLQGTVP-------KSIA  410 (440)
Q Consensus       342 ~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~--~L~~L~l~~n~~~~~~~-------~~~~  410 (440)
                      +|.|+.|++++|.+++.  ++..+..+++|+.|+|++|.|.++.......  .|++|++++|++.+..|       ..+.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            67888888888887763  3456677888888888888887763322223  68888888888775433       3467


Q ss_pred             cCCCCcEEE
Q 045270          411 NCKMLEVLN  419 (440)
Q Consensus       411 ~l~~L~~L~  419 (440)
                      .+|+|+.||
T Consensus       249 ~~P~L~~LD  257 (267)
T 3rw6_A          249 RFPKLLRLD  257 (267)
T ss_dssp             HCTTCCEES
T ss_pred             HCcccCeEC
Confidence            788888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=6.1e-07  Score=77.31  Aligned_cols=98  Identities=28%  Similarity=0.242  Sum_probs=67.5

Q ss_pred             CCCcce--Eeccccccc---ccchhhhhccCCCCEEEcCCCcCCCCCch---h-hhccccEEECCCCcccCCc-hhhhhc
Q 045270          342 MPRLRY--FCAANNGLT---GIIPASLCNATTLSLLDLSNNSFMKKSDA---F-LNCLLQTLDLNGNRLQGTV-PKSIAN  411 (440)
Q Consensus       342 ~~~L~~--L~l~~~~l~---~~~~~~~~~~~~L~~L~l~~n~i~~~~~~---~-~~~~L~~L~l~~n~~~~~~-~~~~~~  411 (440)
                      .|.|..  +++..|...   .........+++|++|+|++|.+..++..   + ..++|+.|+|++|.+.+.. ...+..
T Consensus       140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~  219 (267)
T 3rw6_A          140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG  219 (267)
T ss_dssp             CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT
T ss_pred             CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhccc
Confidence            444544  566666433   22222335789999999999999987432   2 3677999999999999762 233444


Q ss_pred             CCCCcEEECCCCcccccCcc-------cccCCCCCC
Q 045270          412 CKMLEVLNLGNNQFSDKFPC-------WLYDAPSLH  440 (440)
Q Consensus       412 l~~L~~L~l~~n~~~~~~~~-------~l~~~~~L~  440 (440)
                      + +|+.|++++|++.+.+|.       .+..+|+|+
T Consensus       220 l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~  254 (267)
T 3rw6_A          220 L-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLL  254 (267)
T ss_dssp             S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCC
T ss_pred             C-CcceEEccCCcCccccCcchhHHHHHHHHCcccC
Confidence            4 999999999999986652       355566553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.31  E-value=5.7e-05  Score=61.42  Aligned_cols=65  Identities=12%  Similarity=0.162  Sum_probs=31.8

Q ss_pred             ccCCCCeEEecCC-ccCCC---ccccchhcCCCCcEEEcccCccccCCc----ccccccccCceecCCCCccc
Q 045270           45 SLHYLRSLNLART-SFNGT---QIPSKLANISSLTYLNLSDAGFAGHIP----LQISSMARLVALDFSFNQFS  109 (440)
Q Consensus        45 ~l~~L~~L~l~~~-~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~  109 (440)
                      +-+.|++|+++++ .+...   .+.+++.....|+.|+|++|.+.+...    .++...+.|++|+|++|.+.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            4456666666653 44321   133444455566666666665543222    22233345555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.20  E-value=0.00015  Score=58.91  Aligned_cols=108  Identities=12%  Similarity=0.136  Sum_probs=67.0

Q ss_pred             CCccEEEccCC-cccccCCcc---ccccCCCcceEeccccccccc----chhhhhccCCCCEEEcCCCcCCCCCchhh--
Q 045270          318 NNLIYIDFSNN-NFTSSIPAD---TGNFMPRLRYFCAANNGLTGI----IPASLCNATTLSLLDLSNNSFMKKSDAFL--  387 (440)
Q Consensus       318 ~~L~~L~L~~~-~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--  387 (440)
                      +.|++|+|+++ .+.+.-...   ....-+.|+.|+|++|.+.+.    +.+.+..-+.|++|+|++|.|.+......  
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            35677777664 443211111   122256788888888888644    34445566788888888888876532221  


Q ss_pred             ----hccccEEECCCC---cccCC----chhhhhcCCCCcEEECCCCcc
Q 045270          388 ----NCLLQTLDLNGN---RLQGT----VPKSIANCKMLEVLNLGNNQF  425 (440)
Q Consensus       388 ----~~~L~~L~l~~n---~~~~~----~~~~~~~l~~L~~L~l~~n~~  425 (440)
                          ...|++|+|++|   .+.+.    +.+++..-+.|+.|+++.|..
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                234889999765   33432    334566778899999987754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.17  E-value=0.00065  Score=51.50  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=16.4

Q ss_pred             ccEEECCCCcccCCchhhhhcCCCCcEEECCCCcc
Q 045270          391 LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF  425 (440)
Q Consensus       391 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  425 (440)
                      |+.|+|++|.++...+..|..+++|+.|+|++|++
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44444444444444344444444444555544444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.55  E-value=0.0049  Score=46.58  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=30.2

Q ss_pred             EEEcCCcccc--CcccCCCCCccEEEccCCcccccCCccccccCCCcceEeccccccc
Q 045270          301 FIDLSSHQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT  356 (440)
Q Consensus       301 ~L~l~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  356 (440)
                      .++-++++++  ......++++++|+|++|.++ .++...+..+++|+.|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            3444444444  333344556666666666665 555555555666666666666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 5e-16
 Identities = 66/372 (17%), Positives = 123/372 (33%), Gaps = 15/372 (4%)

Query: 52  LNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGS 111
             L +T+   T   + L  +++L    L      G     +  +  L  ++FS NQ +  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 112 ISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV 171
                   L++++        +      +        N   + +D L    N  R  +  
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 172 SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL 231
           +        S L S   L    Q+  +  L NL  L+    S          +    LE 
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291
           L   + ++ +I  L   + L  L L+ NQ+     +     S+  L  L+L++N +    
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLK----DIGTLASLTNLTDLDLANNQISNLA 257

Query: 292 GPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAA 351
               +  L  + L ++Q+          L  +     N          + +  L Y    
Sbjct: 258 PLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 352 NNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIAN 411
            N ++ I P  + + T L  L  +NN     S       +  L    N++    P  +AN
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LAN 371

Query: 412 CKMLEVLNLGNN 423
              +  L L + 
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 7e-15
 Identities = 70/378 (18%), Positives = 134/378 (35%), Gaps = 19/378 (5%)

Query: 23  VIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDA 82
            +   L   +++  +    S   L  + +L        G +    +  +++LT +N S+ 
Sbjct: 24  KMKTVLGKTNVTDTV----SQTDLDQVTTLQA---DRLGIKSIDGVEYLNNLTQINFSNN 76

Query: 83  GFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMF 142
                 PL   ++ +LV +  + NQ +         +L  L         ++     +  
Sbjct: 77  QLTDITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 143 EFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLG 202
                S+ + S +  L    +  + S    V +LK L +L         + ++  I  L 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 262
            L  L+    +               L+ L+L   +L++I  L + + L  L L+ NQIS
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 254

Query: 263 REIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSS-HQLRGNIHQLPNNLI 321
              P          L  L L  N +        + AL  ++L+       +      NL 
Sbjct: 255 NLAPLSGLT----KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 322 YIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK 381
           Y+    NN +   P  +   + +L+    ANN ++    +SL N T ++ L   +N    
Sbjct: 311 YLTLYFNNISDISPVSS---LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365

Query: 382 KSDAFLNCLLQTLDLNGN 399
            +       +  L LN  
Sbjct: 366 LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 8e-09
 Identities = 70/349 (20%), Positives = 121/349 (34%), Gaps = 67/349 (19%)

Query: 120 LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL 179
           L   +  VL   ++  ++ ++  +           + TL      ++ SI   V  L  L
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLD----------QVTTLQADRLGIK-SID-GVEYLNNL 68

Query: 180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL 239
           T +  S+N L        I  L NL KL     +          +    L  L L + ++
Sbjct: 69  TQINFSNNQLTD------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 240 REIPNLKNQSQLQYLYLSENQISR------------------------------------ 263
            +I  LKN + L  L LS N IS                                     
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 264 ---EIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPN 318
              ++ +      +  L  L  ++N +        +  L  + L+ +QL+    +  L  
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT- 241

Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
           NL  +D +NN  ++  P    + + +L       N ++ I P  L   T L+ L+L+ N 
Sbjct: 242 NLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 296

Query: 379 FMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
               S       L  L L  N +    P  +++   L+ L   NN+ SD
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 48/257 (18%), Positives = 88/257 (34%), Gaps = 17/257 (6%)

Query: 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 235
           L +    +L   N+  TV      +L  +  L      +   +S     +   L  +N +
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFS 74

Query: 236 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS 295
           + +L +I  LKN ++L  + ++ NQI+   P           +   L+            
Sbjct: 75  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT------NLTGLTLFNNQITDIDPL 128

Query: 296 IPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355
                   L       +     + L  +   +     +      N     R   ++N   
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188

Query: 356 TGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKML 415
              + A L N  +   L  +NN     +   +   L  L LNGN+L+     ++A+   L
Sbjct: 189 DISVLAKLTNLES---LIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNL 243

Query: 416 EVLNLGNNQFSDKFPCW 432
             L+L NNQ S+  P  
Sbjct: 244 TDLDLANNQISNLAPLS 260

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 1   MQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFN 60
           +   +  +             ++  L L   +IS        + SL  L+ L  A    +
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFANNKVS 342

Query: 61  GTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFN 106
                S LAN++++ +L+      +   PL  +++ R+  L  +  
Sbjct: 343 D---VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 7e-12
 Identities = 45/261 (17%), Positives = 83/261 (31%), Gaps = 15/261 (5%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
                 LDL  N++          LK L +L+L +N +   +       L  L +L LS 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 88

Query: 212 NSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWR 271
           N L         +   +    N  +   + + N  NQ  +  L  +  + S         
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 272 VSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDF--SNNN 329
           +    L  + ++   +         P+L  + L  +++          L  +     + N
Sbjct: 149 MK--KLSYIRIADTNITTIP-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 330 FTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN--------SFMK 381
             S++   +    P LR     NN L   +P  L +   + ++ L NN         F  
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 382 KSDAFLNCLLQTLDLNGNRLQ 402
                       + L  N +Q
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 12/231 (5%)

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ 260
           + A LDL  N +  +    ++     L  L L + K+ +I         +L+ LYLS+NQ
Sbjct: 32  DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN-- 318
           +          +  + +H   ++      F G   +  +                     
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
            L YI  ++ N T+          P L       N +T +  ASL     L+ L LS NS
Sbjct: 151 KLSYIRIADTNITTIPQ----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 379 FMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
                +  L     L+ L LN N+L   VP  +A+ K ++V+ L NN  S 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 6/195 (3%)

Query: 249 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSS 306
                L L  N+I+         +    LH L L +N +          +  L  + LS 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLK--NLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 307 HQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNF-MPRLRYFCAANNGLTGIIPASLCN 365
           +QL+    ++P  L  +    N  T    +         +          +GI   +   
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 366 ATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425
              LS + +++ +           L   L L+GN++      S+     L  L L  N  
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 426 SDKFPCWLYDAPSLH 440
           S      L + P L 
Sbjct: 208 SAVDNGSLANTPHLR 222

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 48/296 (16%), Positives = 92/296 (31%), Gaps = 39/296 (13%)

Query: 10  CDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLA 69
           C    V C + G         E +   +              L+L               
Sbjct: 10  CHLRVVQCSDLGL--------EKVPKDLPP--------DTALLDLQNNKITEI-KDGDFK 52

Query: 70  NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEH---------L 120
           N+ +L  L L +   +   P   + + +L  L  S NQ       +             +
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 112

Query: 121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSS-----ALDTLDLSGNRLRGSIPVSVFE 175
             +  +V +  +    +             + +      L  + ++   +  +IP  +  
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP- 170

Query: 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 235
              LT L L  N +        +  L NLAKL LS+NS++  ++    +   + EL    
Sbjct: 171 -PSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 236 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVG----LHCLNLSHNLL 287
           +  ++    L +   +Q +YL  N IS    N                ++L  N +
Sbjct: 229 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 32/144 (22%), Positives = 47/144 (32%), Gaps = 4/144 (2%)

Query: 299 LRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358
           LR +  S   L      LP +   +D  NN  T     D  N +  L      NN ++ I
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKI 70

Query: 359 IPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVL 418
            P +      L  L LS N   K+    +   LQ L ++ N +             + V+
Sbjct: 71  SPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 419 NLGN--NQFSDKFPCWLYDAPSLH 440
            LG    + S            L 
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLS 153

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.6 bits (153), Expect = 9e-12
 Identities = 67/279 (24%), Positives = 99/279 (35%), Gaps = 69/279 (24%)

Query: 3   WRQSTDCCD--WSGVDCDEAG---HVIGLDLSTESISGGIENAASLFSLHYLRSLNLART 57
           W  +TDCC+  W GV CD       V  LDLS  ++       +SL +L YL  L +   
Sbjct: 27  WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86

Query: 58  SFNGTQIPSKLANISSLTYLNLSDA------------------------GFAGHIPLQIS 93
           +     IP  +A ++ L YL ++                            +G +P  IS
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 94  SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASS- 152
           S+  LV + F  N+ SG+I               +S N L G IP +     +     S 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206

Query: 153 -------------------------------------SALDTLDLSGNRLRGSIPVSVFE 175
                                                  L+ LDL  NR+ G++P  + +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
           LK L SL +S NNL G   + +  NL        + N  
Sbjct: 267 LKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 6e-11
 Identities = 51/282 (18%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 148 SNASSSALDTLDLSGNRLRG--SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
           ++  +  ++ LDLSG  L     IP S+  L  L  L +   N         I  L  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISRE 264
            L +++ +++            ++ L    +     +P  + +   L  +    N+IS  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 265 IPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYID 324
           IP+     S +        + L       ++   L F+DLS + L G+   L  +     
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 325 FSNNNFTSSIPADTGNFMPRL-RYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKS 383
             +    S         + +        NN + G +P  L     L              
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL-------------- 270

Query: 384 DAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425
                    +L+++ N L G +P    N +  +V    NN+ 
Sbjct: 271 --------HSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 45/256 (17%), Positives = 75/256 (29%), Gaps = 24/256 (9%)

Query: 178 KLTSLLLSSNNLHGTVQL-DKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS 236
           ++ +L LS  NL     +   + NL  L  L +   +  V       +    L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 237 CKLREIPNL--KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPY 294
             +             L  L  S N +S  +P  I  +  +     +   N + G     
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD--GNRISG----- 163

Query: 295 SIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNG 354
              A+     S  +L  ++    N L           +    D    M          + 
Sbjct: 164 ---AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 355 LTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKM 414
                     N           +         L+  L  LDL  NR+ GT+P+ +   K 
Sbjct: 221 KNTQKIHLAKN-----------SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 415 LEVLNLGNNQFSDKFP 430
           L  LN+  N    + P
Sbjct: 270 LHSLNVSFNNLCGEIP 285

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 72  SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN 131
            +L  L+L +    G +P  ++ +  L +L+ SFN   G I      +L     +  ++N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANN 301

Query: 132 SLNGSIP 138
                 P
Sbjct: 302 KCLCGSP 308

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 49/278 (17%), Positives = 90/278 (32%), Gaps = 18/278 (6%)

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
           TLDL+G  L   +   +     + +     + +     L +  +   +  +DLS + + V
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEV 60

Query: 217 DESSRNYSFSPMLELLNLASCKLRE--IPNLKNQSQLQYLYLSENQISREIPNWIWRVSV 274
                  S    L+ L+L   +L +  +  L   S L  L LS      E        S 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 275 VGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG-----------NIHQLPNNLIYI 323
             L  LNLS       +      A     ++   L G            + +   NL+++
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 324 DFSNNNFTSSIPADTGNFMPRLRYFCAAN-NGLTGIIPASLCNATTLSLLDLSNNSFMKK 382
           D S++    +        +  L++   +    +       L    TL  L +        
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 239

Query: 383 SDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNL 420
           +   L   L  L +N +        +I N K  E+  +
Sbjct: 240 TLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 8/206 (3%)

Query: 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLS 257
            + +  +++    +L    ++          +L+L+   L       L   ++L  L L 
Sbjct: 8   KVASHLEVNCDKRNL----TALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 258 ENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLP 317
                 ++        +  L   +     L           +  +  +            
Sbjct: 64  -RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN 377
              +   +   N   ++P       P+L     ANN LT +    L     L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 378 SFMK-KSDAFLNCLLQTLDLNGNRLQ 402
           S        F + LL    L+GN   
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 49/197 (24%), Positives = 75/197 (38%), Gaps = 7/197 (3%)

Query: 232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291
           +N     L  +P    +     L+LSEN +       +   +   L  LNL    L   Q
Sbjct: 15  VNCDKRNLTALPPDLPKD-TTILHLSENLLYTFSLATLMPYT--RLTQLNLDRAELTKLQ 71

Query: 292 GPYSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCA 350
              ++P L  +DLS +QL+           + +   + N  +S+P      +  L+    
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 351 ANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKS 408
             N L  + P  L     L  L L+NN+  +     LN L  L TL L  N L  T+PK 
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 409 IANCKMLEVLNLGNNQF 425
                +L    L  N +
Sbjct: 191 FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 1/176 (0%)

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL 214
              L LS N L      ++    +LT L L    L        +  LG L        SL
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 215 AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSV 274
            +   +        +    L S  L  +  L    +L         +   +     ++  
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 275 VGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNF 330
           + L   NL+        G  ++  L   + S + +          L +     N +
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGNPW 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 35/231 (15%), Positives = 79/231 (34%), Gaps = 16/231 (6%)

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
           IF + + +    +    + +  ++  +  +L  +T+L      +     ++ +  L NL 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLI 66

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREI 265
            L+L  N +      +N +    LEL       +  I  L++   L         ++   
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 266 PNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDF 325
                +V  + L+ +     L       Y          ++           + L  +  
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQY------LSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 326 SNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSN 376
            +N  +   P  +   +P L      NN ++ + P  L N + L ++ L+N
Sbjct: 181 DDNKISDISPLAS---LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 35/247 (14%), Positives = 67/247 (27%), Gaps = 38/247 (15%)

Query: 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 235
           L     +    +N+  TV      +L  +  L      +    +     +   L  L L 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 236 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYS 295
             ++ ++  LKN +++  L LS N +         +                        
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT------DVTPL 125

Query: 296 IPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355
                   L     +         L  + + +              + +L    A +N +
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 356 TGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKML 415
           + I P          L  L N              L  + L  N++    P  +AN   L
Sbjct: 186 SDISP----------LASLPN--------------LIEVHLKNNQISDVSP--LANTSNL 219

Query: 416 EVLNLGN 422
            ++ L N
Sbjct: 220 FIVTLTN 226

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 53/278 (19%), Positives = 90/278 (32%), Gaps = 29/278 (10%)

Query: 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211
            +A   + L GNR+      S    + LT L L SN L                      
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 212 NSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWI 269
             L        +     L  L+L  C L+E+     +  + LQYLYL +N +     +  
Sbjct: 91  AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 270 WRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNN 329
               +  L  L L  N +       S+P   F  L S              +     + N
Sbjct: 150 R--DLGNLTHLFLHGNRI------SSVPERAFRGLHS--------------LDRLLLHQN 187

Query: 330 FTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD-AFLN 388
             + +       + RL       N L+ +   +L     L  L L++N ++       L 
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247

Query: 389 CLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426
             LQ    + + +  ++P+ +A     ++  L  N   
Sbjct: 248 AWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 35/215 (16%), Positives = 67/215 (31%), Gaps = 8/215 (3%)

Query: 232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291
            +     L+ +P     +  Q ++L  N+IS            + +  L+ +    +   
Sbjct: 16  TSCPQQGLQAVPVGIPAA-SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 292 GPYSIPALRFIDLSSHQLRGNIHQLP----NNLIYIDFSNNNFTSSIPADTGNFMPRLRY 347
               +  L  +DLS +    ++          L  +          +       +  L+Y
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY 133

Query: 348 FCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL--LQTLDLNGNRLQGTV 405
               +N L  +   +  +   L+ L L  N      +     L  L  L L+ NR+    
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 406 PKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440
           P +  +   L  L L  N  S      L    +L 
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 9e-04
 Identities = 47/270 (17%), Positives = 79/270 (29%), Gaps = 30/270 (11%)

Query: 62  TQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121
             +P  +   ++   + L     +        +   L  L    N  +   ++      L
Sbjct: 24  QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 122 NLVYAVLSDNSLNGSIPRS----------------MFEFPIFSNASSSALDTLDLSGNRL 165
                +  +  L    P +                + E         +AL  L L  N L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 166 RGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN-SLAVDESSRNYS 224
           +     +  +L  LT L L  N +   V       L +L +L L  N    V   +    
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 225 FSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS---REIPNWIWRVSVVGLHCLN 281
              M   L   +        L     LQYL L++N      R  P W W      L    
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW------LQKFR 254

Query: 282 LSHNLLVGFQGPYSIPALRFIDLSSHQLRG 311
            S + +     P  +       L+++ L+G
Sbjct: 255 GSSSEVPC-SLPQRLAGRDLKRLAANDLQG 283

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAV 216
            L L+   L  ++   + +L  +T L LS N L           L  L  L++   S   
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDNA 54

Query: 217 DESSRNYSFSPMLELLNLASCKLREIP---NLKNQSQLQYLYLSENQISRE 264
            E+    +  P L+ L L + +L++      L +  +L  L L  N + +E
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 5/120 (4%)

Query: 232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291
           L+LA   L  + +L+    + +L LS N++    P       +  L   + +   + G  
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 292 GPYSIPALRFID--LSSHQLRGNIHQLPNNLIYIDFSNNNFTS--SIPADTGNFMPRLRY 347
               +  L   +  L        +   P  L+ ++   N+      I       +P +  
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/105 (18%), Positives = 32/105 (30%)

Query: 280 LNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTG 339
           L+L+H  L        +  +  +DLS ++LR     L           ++          
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 340 NFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD 384
           N           N          L +   L LL+L  NS  ++  
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 49/289 (16%), Positives = 93/289 (32%), Gaps = 26/289 (8%)

Query: 155 LDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNS- 213
           L++L  S N L   +P      + L SLL+ +NNL     L  +L    ++   L     
Sbjct: 60  LESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 115

Query: 214 -----LAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNW 268
                        N S   + +L             L+   +LQ L       +      
Sbjct: 116 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 175

Query: 269 IWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIY------ 322
                 + L  +   +N+L       ++P L  I   ++ L+      P+          
Sbjct: 176 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 235

Query: 323 ----IDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378
                +   +     +  +  + +  L       N  +  I +      +L  L++SNN 
Sbjct: 236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 295

Query: 379 FMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427
            ++         L+ L  + N L   VP+   N   L+ L++  N   +
Sbjct: 296 LIELPALPPR--LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 10/80 (12%)

Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
           P LE LN+++ KL E+P L    +L+ L  S N ++ E+P          L  L++ +N 
Sbjct: 284 PSLEELNVSNNKLIELPAL--PPRLERLIASFNHLA-EVPELPQN-----LKQLHVEYNP 335

Query: 287 LVGFQGPYSIPALRFIDLSS 306
           L  F  P    ++  + ++S
Sbjct: 336 LREF--PDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 160 LSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL-AVDE 218
              N     I         L  L +S+N L   ++L        L +L  S+N L  V E
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKL---IELPA--LPPRLERLIASFNHLAEVPE 321

Query: 219 SSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS 257
             +N      L+ L++    LRE P++     ++ L ++
Sbjct: 322 LPQN------LKQLHVEYNPLREFPDIP--ESVEDLRMN 352

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 347 YFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL------NCLLQTLDLNGNR 400
                + G+  +        + L +L L++      S + L      N  L+ LDL+ N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 401 LQGTVPKSIA-----NCKMLEVLNLGNNQFSDKFPCWL 433
           L       +         +LE L L +  +S++    L
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 5e-04
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI----IPASLCNATTLSLLDL 374
           ++  +D      + +  A+    + + +     + GLT      I ++L     L+ L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 375 SNNSFMKKSDAFLNCLLQTLDLNGNRLQ 402
            +N      D  ++C+LQ L     ++Q
Sbjct: 63  RSNEL---GDVGVHCVLQGLQTPSCKIQ 87

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 13/78 (16%)

Query: 369 LSLLDLSNNSFMKKSDAFLNCL------LQTLDLNGNRLQGTVPKSIA----NCKMLEVL 418
           +  LD+        SDA    L       Q + L+   L     K I+        L  L
Sbjct: 4   IQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 419 NLGNNQFSDKFPCWLYDA 436
           NL +N+  D     +   
Sbjct: 61  NLRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI------PNLKNQSQLQYLYL 256
           ++  LD+    L+    +         +++ L  C L E         L+    L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 257 SENQISREIPNWI---WRVSVVGLHCLNLSHN 285
             N++     + +    +     +  L+L + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 36/290 (12%), Positives = 68/290 (23%), Gaps = 13/290 (4%)

Query: 150 ASSSALDTLDLSGNRLRG----SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
               ++  + LSGN +       +  ++   K L     S       V+ +    L  L 
Sbjct: 28  LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIPEALRLLL 86

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREI 265
           +  L    L     S N       E L     K   + +L   +                
Sbjct: 87  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 146

Query: 266 PNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDF 325
              + + +       ++         G     A  F           +            
Sbjct: 147 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 206

Query: 326 SNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTL---SLLDLSNNSFMKK 382
                         +          ++     +          L    L      + +  
Sbjct: 207 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 266

Query: 383 SDAFLNCLLQTLDLNGNRLQGTVPKSIA-----NCKMLEVLNLGNNQFSD 427
                N  LQTL L  N ++    +++          L  L L  N+FS+
Sbjct: 267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 9/143 (6%)

Query: 239 LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPA 298
           + +     N  + + L L   +I   I N     ++     ++ S N +    G   +  
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKIP-VIENLG--ATLDQFDAIDFSDNEIRKLDGFPLLRR 64

Query: 299 LRFIDLSSHQLRGNI---HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAAN--- 352
           L+ + ++++++        Q   +L  +  +NN+       D    +  L Y C      
Sbjct: 65  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124

Query: 353 NGLTGIIPASLCNATTLSLLDLS 375
                     +     + +LD  
Sbjct: 125 TNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 194 QLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQY 253
           Q  +  N     +LDL    + V E+    +     + ++ +  ++R++       +L+ 
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRKLDGFPLLRRLKT 67

Query: 254 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN- 312
           L ++ N+I R        +  +    L  +  + +G   P +                N 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 313 -------IHQLPNNLIYIDFS 326
                  I+++P  +  +DF 
Sbjct: 128 KHYRLYVIYKVP-QVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 7/132 (5%)

Query: 145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL 204
             ++NA       LDL G ++   I      L +  ++  S N +    +LD    L  L
Sbjct: 12  AQYTNAVR--DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRL 65

Query: 205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISRE 264
             L ++ N              P L  L L +  L E+ +L   + L+ L       +  
Sbjct: 66  KTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124

Query: 265 IPNWIWRVSVVG 276
                +R+ V+ 
Sbjct: 125 TNKKHYRLYVIY 136

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 29/189 (15%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 146 IFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205
           IF++ + +      L    +  ++  +  +L ++T+L      +     +D +  L NL 
Sbjct: 11  IFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLT 65

Query: 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREI 265
           +++ S N L      +N +                                     + +I
Sbjct: 66  QINFSNNQLTDITPLKNLTKLVD-------ILMNNNQIADITPLANLTNLTGLTLFNNQI 118

Query: 266 PNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG--NIHQLPNNLIYI 323
            +     ++  L+ L LS N +        + +L+ ++ SS+Q+     +  L   L  +
Sbjct: 119 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLT-TLERL 177

Query: 324 DFSNNNFTS 332
           D S+N  + 
Sbjct: 178 DISSNKVSD 186

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 19/152 (12%), Positives = 48/152 (31%), Gaps = 1/152 (0%)

Query: 199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 258
           +      K++L      +++     S     + L L++  + +I +L     L+ L L  
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGR 79

Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPAL-RFIDLSSHQLRGNIHQLP 317
           N I +         ++  L         L G +   ++  L    +  ++    +     
Sbjct: 80  NLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFC 349
           + L  +  + N   +    +      R+    
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 26/200 (13%), Positives = 57/200 (28%), Gaps = 13/200 (6%)

Query: 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 259
                 K +L   S+    +    +    ++ +   +  ++ +  ++    +  L+L+ N
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 78

Query: 260 QISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNN 319
           +++      I  ++ +            V                  H    +I+ L + 
Sbjct: 79  KLT-----DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 320 LIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF 379
                    N   +                  +N ++ I+P  L   T L  L LS N  
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 380 MKKSDAFLNCL-LQTLDLNG 398
                A      L  L+L  
Sbjct: 191 -SDLRALAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.13
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.73
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.69
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.16

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.5e-30  Score=233.66  Aligned_cols=268  Identities=32%  Similarity=0.488  Sum_probs=216.0

Q ss_pred             CCCCCCCCCcc--eeeeeeCCC---CceEEEeeccceeecc--cCCCccccccCCCCeEEecC-CccCCCccccchhcCC
Q 045270            1 MQWRQSTDCCD--WSGVDCDEA---GHVIGLDLSTESISGG--IENAASLFSLHYLRSLNLAR-TSFNGTQIPSKLANIS   72 (440)
Q Consensus         1 ~~w~~~~~~~~--~~~~~~~~~---~~l~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~~~~l~~~~~~l~   72 (440)
                      ++|..++|+|.  |.||+|+..   .||++|+|+++.+.+.  +|.  +++++++|++|++++ |.+.+. +|..|++++
T Consensus        25 ~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~--~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~  101 (313)
T d1ogqa_          25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLT  101 (313)
T ss_dssp             TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCT
T ss_pred             CCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh--HHhcCccccccccccccccccc-ccccccccc
Confidence            47999999995  999999865   4899999999999874  445  899999999999987 566655 899999999


Q ss_pred             CCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCc
Q 045270           73 SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASS  152 (440)
Q Consensus        73 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~  152 (440)
                      +|++|++++|.+.+..+..+..++.|+++++++|.+.+.++. .+..+++++.+++++|.+.+.+|..+..+.       
T Consensus       102 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~-------  173 (313)
T d1ogqa_         102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFS-------  173 (313)
T ss_dssp             TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGCCC-------
T ss_pred             ccchhhhccccccccccccccchhhhcccccccccccccCch-hhccCcccceeecccccccccccccccccc-------
Confidence            999999999999988888899999999999999998866665 589999999999999999888998887664       


Q ss_pred             ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270          153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL  232 (440)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  232 (440)
                      ..++.+++++|.+.+..+..+..+..+ .+++..+...+..+ ..+..+++++.+++.++.+....+  .+..+++++.|
T Consensus       174 ~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~l~~~~~--~~~~~~~L~~L  249 (313)
T d1ogqa_         174 KLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGL  249 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCG-GGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEE
T ss_pred             ccccccccccccccccccccccccccc-cccccccccccccc-cccccccccccccccccccccccc--ccccccccccc
Confidence            345889999999887777777665444 68888887764443 456778889999999988765433  25667888888


Q ss_pred             ecCCCCCC-CCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcc
Q 045270          233 NLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL  286 (440)
Q Consensus       233 ~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  286 (440)
                      ++++|+++ .+|. +..+++|+.|++++|+++|.+|.. .  ...+|+.+++++|.
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~--~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G--NLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T--TGGGSCGGGTCSSS
T ss_pred             cCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-c--cCCCCCHHHhCCCc
Confidence            88888887 6776 888888888888888888777742 1  22335556666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.5e-26  Score=213.72  Aligned_cols=343  Identities=22%  Similarity=0.257  Sum_probs=182.5

Q ss_pred             ccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhccccc
Q 045270           43 LFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLN  122 (440)
Q Consensus        43 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~  122 (440)
                      ...+.+|++|+++++.+..  + +.+..+++|++|++++|.+++ ++ .++++++|++|++++|.+.+ ++.  ++.+++
T Consensus        40 ~~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~-i~~--l~~l~~  111 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD-ITP--LANLTN  111 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG--GTTCTT
T ss_pred             HHHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccc-ccc--cccccc
Confidence            3455667777776666643  2 345666777777777776663 33 36667777777777776653 222  566667


Q ss_pred             ceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCC
Q 045270          123 LVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLG  202 (440)
Q Consensus       123 L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  202 (440)
                      |+.++++++.+++..+...          ...+.......+.+.......................      ...+....
T Consensus       112 L~~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  175 (384)
T d2omza2         112 LTGLTLFNNQITDIDPLKN----------LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD------LKPLANLT  175 (384)
T ss_dssp             CCEEECCSSCCCCCGGGTT----------CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC------CGGGTTCT
T ss_pred             ccccccccccccccccccc----------cccccccccccccccccccccccccccccccccccch------hhhhcccc
Confidence            7777776666653222111          1233334333333321111111011111111000000      01122222


Q ss_pred             CCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEc
Q 045270          203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL  282 (440)
Q Consensus       203 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  282 (440)
                      .........+....   ......+++++.+.++++.++.++.+..+++|+++++++|.+.+ .+ .+.  ..++++.+++
T Consensus       176 ~~~~~~~~~~~~~~---~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~-~~-~l~--~l~~L~~L~l  248 (384)
T d2omza2         176 TLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IG-TLA--SLTNLTDLDL  248 (384)
T ss_dssp             TCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGG--GCTTCSEEEC
T ss_pred             cccccccccccccc---ccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCC-cc-hhh--cccccchhcc
Confidence            22333333322211   11123344455555555555444444444555555555554432 11 121  1233555555


Q ss_pred             cCcccccccCCccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchh
Q 045270          283 SHNLLVGFQGPYSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPA  361 (440)
Q Consensus       283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  361 (440)
                      ++|.++...+...+++|++++++++++.... ...++.++.+.+..|.+.+ ++ .+ ..++.++.|++++|++++..  
T Consensus       249 ~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~-~~-~~-~~~~~l~~L~ls~n~l~~l~--  323 (384)
T d2omza2         249 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED-IS-PI-SNLKNLTYLTLYFNNISDIS--  323 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC-CG-GG-GGCTTCSEEECCSSCCSCCG--
T ss_pred             ccCccCCCCcccccccCCEeeccCcccCCCCcccccccccccccccccccc-cc-cc-chhcccCeEECCCCCCCCCc--
Confidence            5555555444445566666666665554322 2234566777777776652 22 22 33788888888888887643  


Q ss_pred             hhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCC
Q 045270          362 SLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNN  423 (440)
Q Consensus       362 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  423 (440)
                      .+..+++|++|++++|++++++.....++|++|++++|++++..|  ++++++|+.|++++|
T Consensus       324 ~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         324 PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            377788888888888888877644345668888888888886654  788899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.5e-25  Score=205.54  Aligned_cols=339  Identities=23%  Similarity=0.267  Sum_probs=241.8

Q ss_pred             CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270           21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  100 (440)
                      .++++|+++++.++. . +  .+..+++|++|++++|.+..  ++ .++++++|++|++++|.+.+ ++ .++++++|++
T Consensus        44 ~~l~~L~l~~~~I~~-l-~--gl~~L~nL~~L~Ls~N~l~~--l~-~l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~  114 (384)
T d2omza2          44 DQVTTLQADRLGIKS-I-D--GVEYLNNLTQINFSNNQLTD--IT-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG  114 (384)
T ss_dssp             TTCCEEECCSSCCCC-C-T--TGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCE
T ss_pred             CCCCEEECCCCCCCC-c-c--ccccCCCCCEEeCcCCcCCC--Cc-cccCCccccccccccccccc-cc-cccccccccc
Confidence            689999999999875 2 2  68899999999999999865  34 48999999999999999984 33 4899999999


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      |+++++.+.+...   ......+.......+.+....+......        ..........     .....+.......
T Consensus       115 L~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~-----~~~~~~~~~~~~~  178 (384)
T d2omza2         115 LTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTS--------LQQLSFGNQV-----TDLKPLANLTTLE  178 (384)
T ss_dssp             EECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTT--------CSEEEEEESC-----CCCGGGTTCTTCC
T ss_pred             ccccccccccccc---cccccccccccccccccccccccccccc--------cccccccccc-----chhhhhccccccc
Confidence            9999998874433   3445566677666665542222111110        1111111111     1122333444444


Q ss_pred             EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcc
Q 045270          181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ  260 (440)
Q Consensus       181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~  260 (440)
                      ......+...   ....+..+++++.++++++.++...+   ...+++|++|++.+|.++.++.+..+++|+.+++++|.
T Consensus       179 ~~~~~~~~~~---~~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~  252 (384)
T d2omza2         179 RLDISSNKVS---DISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ  252 (384)
T ss_dssp             EEECCSSCCC---CCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             cccccccccc---cccccccccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCcchhhcccccchhccccCc
Confidence            4555544432   12335677888888888887765433   34567788888888888888777888888888888888


Q ss_pred             cccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCcccc
Q 045270          261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTG  339 (440)
Q Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~  339 (440)
                      +++..+  +  ...++|++++++++.+....+...++.++.+.+..+++.+.. ...+++++.|++++|.+.+ ++. + 
T Consensus       253 l~~~~~--~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~~-l-  325 (384)
T d2omza2         253 ISNLAP--L--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISP-V-  325 (384)
T ss_dssp             CCCCGG--G--TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CGG-G-
T ss_pred             cCCCCc--c--cccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCC-Ccc-c-
Confidence            765332  2  234568888888888888777777888889998888876533 3446789999999998873 432 3 


Q ss_pred             ccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCC
Q 045270          340 NFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGN  399 (440)
Q Consensus       340 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n  399 (440)
                      ..+|+|+.|++++|.+++. + .+..+++|++|++++|++++++.....++|+.|+|++|
T Consensus       326 ~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             ccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            3389999999999998853 3 58889999999999999998865444567999999887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=9.7e-23  Score=181.56  Aligned_cols=274  Identities=19%  Similarity=0.229  Sum_probs=174.7

Q ss_pred             cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270          122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL  201 (440)
Q Consensus       122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  201 (440)
                      ..+.++.++..++ .+|..+.          +.+++|++++|.+....+..|.++++|++|++++|.+. .+.+..|..+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~----------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l   78 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP----------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPL   78 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC----------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTC
T ss_pred             cCCEEEecCCCCC-ccCCCCC----------CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCC
Confidence            4455566665555 5565442          45666677766666322335666666666666666665 4444556666


Q ss_pred             CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeE
Q 045270          202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC  279 (440)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  279 (440)
                      +.|+.|++++|+++.....    ..+.++.|.+.++.+..++.  +.....+..++...+..........          
T Consensus        79 ~~L~~L~l~~n~l~~l~~~----~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~----------  144 (305)
T d1xkua_          79 VKLERLYLSKNQLKELPEK----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG----------  144 (305)
T ss_dssp             TTCCEEECCSSCCSBCCSS----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT----------
T ss_pred             CccCEecccCCccCcCccc----hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcc----------
Confidence            6666666666665543321    23455666666666555544  4444445555554443211110000          


Q ss_pred             EEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccc
Q 045270          280 LNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGII  359 (440)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  359 (440)
                                  ....+++|+.+++++|.+.......++++++|++++|...+..+..+.. ++.+++|++++|.+++..
T Consensus       145 ------------~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~L~~s~n~l~~~~  211 (305)
T d1xkua_         145 ------------AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVD  211 (305)
T ss_dssp             ------------GGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEEC
T ss_pred             ------------ccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhc-cccccccccccccccccc
Confidence                        0123456666666666665554455678888888888887555544444 888999999999998888


Q ss_pred             hhhhhccCCCCEEEcCCCcCCCCCchhh-hccccEEECCCCcccCCchhhh------hcCCCCcEEECCCCccc--ccCc
Q 045270          360 PASLCNATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNGNRLQGTVPKSI------ANCKMLEVLNLGNNQFS--DKFP  430 (440)
Q Consensus       360 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~------~~l~~L~~L~l~~n~~~--~~~~  430 (440)
                      +..+.++++|++|++++|+++.+|..+. .++|+.|++++|+++......|      ...++|+.|++++|++.  +..|
T Consensus       212 ~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             cccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            8888999999999999999998876555 4679999999999886544443      45788999999999885  3344


Q ss_pred             cccc
Q 045270          431 CWLY  434 (440)
Q Consensus       431 ~~l~  434 (440)
                      ..|.
T Consensus       292 ~~f~  295 (305)
T d1xkua_         292 STFR  295 (305)
T ss_dssp             GGGT
T ss_pred             hHhc
Confidence            4444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=6.1e-24  Score=190.11  Aligned_cols=247  Identities=28%  Similarity=0.370  Sum_probs=196.3

Q ss_pred             CCCCeEEecCCccCCC-ccccchhcCCCCcEEEccc-CccccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270           47 HYLRSLNLARTSFNGT-QIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV  124 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~-~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~  124 (440)
                      .++++|+++++.+... .+|..++++++|++|++++ |.+.+.+|.+|+++++|++|+|++|.+.+..+. .+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc-cccchhhhc
Confidence            4789999999988653 3789999999999999987 788889999999999999999999999855544 688899999


Q ss_pred             EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCc-cEEeccccccccccchhhHhcCCC
Q 045270          125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL-TSLLLSSNNLHGTVQLDKILNLGN  203 (440)
Q Consensus       125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~  203 (440)
                      .+++++|.+...+|..+..+        +.++++++++|.+.+.+|..+..+..+ +.+.+.+|.+.+..+ ..+..+..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l--------~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~-~~~~~l~~  199 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSL--------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLNL  199 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGC--------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCCC
T ss_pred             ccccccccccccCchhhccC--------cccceeecccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            99999999988899888766        689999999999988888888888776 889999999875444 45666644


Q ss_pred             CcEEEcCCCcccccCCccccCCccccceeecCCCCCCCC-CCCcccCcccEEeccCcccccccCcccccccccceeEEEc
Q 045270          204 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI-PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL  282 (440)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  282 (440)
                       ..+++..+......+.. ...+++++.+++.++.+... +.+..+++|+.|++++|++++.+|..+...  ++|++|++
T Consensus       200 -~~l~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L--~~L~~L~L  275 (313)
T d1ogqa_         200 -AFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL--KFLHSLNV  275 (313)
T ss_dssp             -SEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC--TTCCEEEC
T ss_pred             -ccccccccccccccccc-ccccccccccccccccccccccccccccccccccCccCeecccCChHHhCC--CCCCEEEC
Confidence             46888888776555444 66788999999999988754 448888999999999999998899887544  34777777


Q ss_pred             cCccccc-ccCCccCCceeEEEcCCc
Q 045270          283 SHNLLVG-FQGPYSIPALRFIDLSSH  307 (440)
Q Consensus       283 ~~~~~~~-~~~~~~~~~L~~L~l~~~  307 (440)
                      ++|.+++ ++....+++|+.+++.+|
T Consensus       276 s~N~l~g~iP~~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         276 SFNNLCGEIPQGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred             cCCcccccCCCcccCCCCCHHHhCCC
Confidence            7777663 333333444444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4.9e-22  Score=176.95  Aligned_cols=275  Identities=20%  Similarity=0.228  Sum_probs=196.0

Q ss_pred             cCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCc-cccccccccccCcccccEEEcCCCccCCcccccccc
Q 045270           97 RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPR-SMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE  175 (440)
Q Consensus        97 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~  175 (440)
                      .+++++.++..++ .+|.. +  .+++++|++++|+++ .+|. .+..+        ++|++|++++|.+....+..|.+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~-l--~~~l~~L~Ls~N~i~-~l~~~~f~~l--------~~L~~L~l~~n~~~~i~~~~f~~   77 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKD-L--PPDTALLDLQNNKIT-EIKDGDFKNL--------KNLHTLILINNKISKISPGAFAP   77 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCS-C--CTTCCEEECCSSCCC-CBCTTTTTTC--------TTCCEEECCSSCCCCBCTTTTTT
T ss_pred             cCCEEEecCCCCC-ccCCC-C--CCCCCEEECcCCcCC-CcChhHhhcc--------ccccccccccccccccchhhhhC
Confidence            6778888888887 44432 2  368999999999998 5554 45444        79999999999999666778999


Q ss_pred             ccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC----CCcccCcc
Q 045270          176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP----NLKNQSQL  251 (440)
Q Consensus       176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~----~~~~~~~L  251 (440)
                      +++|++|++.+|.++ .++.   .....+..|...++.+....... +........+....+......    .+..+++|
T Consensus        78 l~~L~~L~l~~n~l~-~l~~---~~~~~l~~L~~~~n~l~~l~~~~-~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L  152 (305)
T d1xkua_          78 LVKLERLYLSKNQLK-ELPE---KMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  152 (305)
T ss_dssp             CTTCCEEECCSSCCS-BCCS---SCCTTCCEEECCSSCCCBBCHHH-HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             CCccCEecccCCccC-cCcc---chhhhhhhhhccccchhhhhhhh-hhccccccccccccccccccCCCcccccccccc
Confidence            999999999999987 5553   34568899999999887655443 556667788888877554222    27778888


Q ss_pred             cEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCccc
Q 045270          252 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFT  331 (440)
Q Consensus       252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~  331 (440)
                      +.+++++|.+.. ++..+    .+++++|++++|......+.                   ....++.++.|++++|.+.
T Consensus       153 ~~l~l~~n~l~~-l~~~~----~~~L~~L~l~~n~~~~~~~~-------------------~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         153 SYIRIADTNITT-IPQGL----PPSLTELHLDGNKITKVDAA-------------------SLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             CEEECCSSCCCS-CCSSC----CTTCSEEECTTSCCCEECTG-------------------GGTTCTTCCEEECCSSCCC
T ss_pred             CccccccCCccc-cCccc----CCccCEEECCCCcCCCCChh-------------------Hhhcccccccccccccccc
Confidence            999998887753 33322    23455666655544332211                   1122356778888888887


Q ss_pred             ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--------hccccEEECCCCccc-
Q 045270          332 SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--------NCLLQTLDLNGNRLQ-  402 (440)
Q Consensus       332 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--------~~~L~~L~l~~n~~~-  402 (440)
                      + ++...+..+++|++|++++|.++ .+|.++..+++|++|++++|+|+.++...+        ..+|+.|++++|++. 
T Consensus       209 ~-~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         209 A-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             E-ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             c-cccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            4 44444444899999999999998 457789999999999999999988754333        345999999999876 


Q ss_pred             -CCchhhhhcCCCC
Q 045270          403 -GTVPKSIANCKML  415 (440)
Q Consensus       403 -~~~~~~~~~l~~L  415 (440)
                       ...|.+|.-+...
T Consensus       287 ~~~~~~~f~~~~~~  300 (305)
T d1xkua_         287 WEIQPSTFRCVYVR  300 (305)
T ss_dssp             GGSCGGGGTTCCCG
T ss_pred             CcCCHhHhcccccC
Confidence             3455666544433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.3e-21  Score=170.51  Aligned_cols=207  Identities=24%  Similarity=0.193  Sum_probs=153.7

Q ss_pred             CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270           47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA  126 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L  126 (440)
                      +.+++|++++|++... .+.+|.++++|++|+++++.+....+..+..+..++++....+.....++...+..+++|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCC-CHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            4678888888887543 335677888888888888888766666677777888876654433335555567888888888


Q ss_pred             EecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcE
Q 045270          127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAK  206 (440)
Q Consensus       127 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  206 (440)
                      ++++|.+....+..+.        ..++|+.+++++|.+....+..|..+++|+.|++++|.+. .++...|.++++|+.
T Consensus       111 ~l~~n~~~~~~~~~~~--------~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         111 HLDRCGLQELGPGLFR--------GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDR  181 (284)
T ss_dssp             ECTTSCCCCCCTTTTT--------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCE
T ss_pred             ecCCcccccccccccc--------hhcccchhhhccccccccChhHhccccchhhcccccCccc-ccchhhhccccccch
Confidence            8888877633333332        2367888888888887544566777888888888888886 566667788888888


Q ss_pred             EEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccc
Q 045270          207 LDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISRE  264 (440)
Q Consensus       207 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~  264 (440)
                      +++.+|.++...+.. +..+++|+.|++++|.+..++.  +..+++|+.+++++|.+...
T Consensus       182 l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         182 LLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             EECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhhhhccccccChhH-hhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            888888887666554 7778888888888888887765  77888888888888877654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-20  Score=165.42  Aligned_cols=231  Identities=23%  Similarity=0.290  Sum_probs=115.2

Q ss_pred             cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCC-cccccCCccccCCcccccee
Q 045270          154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN-SLAVDESSRNYSFSPMLELL  232 (440)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L  232 (440)
                      .+++|++++|.+....+..|.++++|++|+++++.+. .+....+..+..+..+....+ .+....... +..+++|+.|
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~~~l~~L~~L  110 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTL  110 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchh-hcccccCCEE
Confidence            4455555555554222234445555555555555544 333334444444444443322 222222221 4444445555


Q ss_pred             ecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcccc
Q 045270          233 NLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR  310 (440)
Q Consensus       233 ~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (440)
                      ++++|.+..++.  +..+++|+.+++++|.+++..+..+.                        .+++++.|++++|++.
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~------------------------~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR------------------------DLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------------------TCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhc------------------------cccchhhcccccCccc
Confidence            555554443332  44444455555555444432222221                        1222333333333222


Q ss_pred             Cc---ccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-Cchh
Q 045270          311 GN---IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAF  386 (440)
Q Consensus       311 ~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~  386 (440)
                      ..   ....+++|+.+++++|.+.+..|..+.. +++|++|++++|.+.+..+..|..+++|++|++++|++.-. +...
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~-l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~  245 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP  245 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhh-hhhcccccccccccccccccccccccccCEEEecCCCCCCCccchH
Confidence            11   1112346666677777766444444433 77888888888888777777787888888888888777644 2223


Q ss_pred             hhccccEEECCCCcccCCchhhhhc
Q 045270          387 LNCLLQTLDLNGNRLQGTVPKSIAN  411 (440)
Q Consensus       387 ~~~~L~~L~l~~n~~~~~~~~~~~~  411 (440)
                      +...++.+....+.+.+..|..+.+
T Consensus       246 l~~~l~~~~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         246 LWAWLQKFRGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             HHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             HHHHHHhCcCCCCceEeCCchHHcC
Confidence            3333566666666666556655543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-20  Score=161.98  Aligned_cols=201  Identities=24%  Similarity=0.229  Sum_probs=129.9

Q ss_pred             cccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccc
Q 045270           44 FSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL  123 (440)
Q Consensus        44 ~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L  123 (440)
                      .....+.+++.+++.++.  +|..+.  +++++|+|++|.+.+..+.+|.++++|++|+|++|.++ .++.  ++.+++|
T Consensus         7 ~~~~~~~~v~C~~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L   79 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVL   79 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTC
T ss_pred             cccCCCeEEEccCCCCCe--eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--ccccccc
Confidence            344445555665555532  454443  45666666666666444455666666666666666665 3332  3456666


Q ss_pred             eEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCC
Q 045270          124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN  203 (440)
Q Consensus       124 ~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  203 (440)
                      ++|++++|++. ..+..+..+        +.|++|+++++.+....+..+..+.++++|.+.+|.+. .++...+..++.
T Consensus        80 ~~L~Ls~N~l~-~~~~~~~~l--------~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~  149 (266)
T d1p9ag_          80 GTLDLSHNQLQ-SLPLLGQTL--------PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK  149 (266)
T ss_dssp             CEEECCSSCCS-SCCCCTTTC--------TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTT
T ss_pred             ccccccccccc-ccccccccc--------cccccccccccccceeeccccccccccccccccccccc-eecccccccccc
Confidence            66666666665 344444333        56777777777666445555666777777777777776 555566677777


Q ss_pred             CcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcccc
Q 045270          204 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQIS  262 (440)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~  262 (440)
                      ++.+++++|+++...... +..+++|+.|++++|.++.+|. +..+++|+.|++++|++.
T Consensus       150 l~~l~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         150 LEKLSLANNNLTELPAGL-LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCEEECTTSCCSCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             chhcccccccccccCccc-cccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            888888888777655544 6677888888888888888876 667788888888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.7e-20  Score=158.87  Aligned_cols=191  Identities=23%  Similarity=0.238  Sum_probs=87.5

Q ss_pred             CCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEE
Q 045270          203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCL  280 (440)
Q Consensus       203 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  280 (440)
                      .+.+++.+++.++..+..    -.++++.|++++|.++.++.  |..+++|++|++++|.++.. +. +.  ..++|+.|
T Consensus        11 ~~~~v~C~~~~L~~iP~~----lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~~-~~--~l~~L~~L   82 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DG--TLPVLGTL   82 (266)
T ss_dssp             TCCEEECTTSCCSSCCSC----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CS--CCTTCCEE
T ss_pred             CCeEEEccCCCCCeeCcC----cCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-cc-cc--cccccccc
Confidence            344455555555443221    12346666666666655543  55566666666666655421 11 11  22335555


Q ss_pred             EccCcccccccCC-ccCCceeEEEcCCccccCccc---CCCCCccEEEccCCcccccCCccccccCCCcceEeccccccc
Q 045270          281 NLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNIH---QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT  356 (440)
Q Consensus       281 ~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  356 (440)
                      ++++|.+...... ..+++|+.++++++.+.....   ..+.++++|++++|.+. .++...+..++.++.+++++|+++
T Consensus        83 ~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccccccccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhccccccccc
Confidence            5555555444332 234455555555444332221   12334444455444444 333333333444444555554444


Q ss_pred             ccchhhhhccCCCCEEEcCCCcCCCCCchhh-hccccEEECCCCccc
Q 045270          357 GIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNGNRLQ  402 (440)
Q Consensus       357 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~n~~~  402 (440)
                      +..+..|..+++|++|++++|+++.+|..++ ..+|+.|+|++|++.
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            4444444444445555554444444433322 233444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=8e-18  Score=152.60  Aligned_cols=58  Identities=28%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             hcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCccc
Q 045270          199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQI  261 (440)
Q Consensus       199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~  261 (440)
                      ..++.++.+.+.++.......     .....+.+...+..+..++.+..++.++.+++++|..
T Consensus       159 ~~l~~l~~L~l~~n~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~  216 (353)
T d1jl5a_         159 QNLPFLTAIYADNNSLKKLPD-----LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL  216 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             cccccceeccccccccccccc-----ccccccccccccccccccccccccccccccccccccc
Confidence            344555555555554432211     1122344455555555555556666667777666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=2.8e-18  Score=155.62  Aligned_cols=312  Identities=22%  Similarity=0.319  Sum_probs=199.6

Q ss_pred             CCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccC
Q 045270           72 SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS  151 (440)
Q Consensus        72 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~  151 (440)
                      .++++|+++++.++ .+|..   .++|++|++++|+++ .++.    .+.+|+.|++.+|.++ .++.    +|      
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~-~l~~----lp------   97 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLK-ALSD----LP------   97 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-CCCS----CC------
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccc-hhhh----hc------
Confidence            57899999999987 67743   468999999999988 5553    2468899999998886 4432    32      


Q ss_pred             cccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccce
Q 045270          152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL  231 (440)
Q Consensus       152 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  231 (440)
                       +.|++|++++|.+. .+|. ++.+++|+.|++.++.+.. .+    .....+..+.+..+.....   ..+..++.++.
T Consensus        98 -~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~----~~~~~l~~l~~~~~~~~~~---~~l~~l~~l~~  166 (353)
T d1jl5a_          98 -PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LP----DLPPSLEFIAAGNNQLEEL---PELQNLPFLTA  166 (353)
T ss_dssp             -TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSSC---CCCTTCTTCCE
T ss_pred             -cccccccccccccc-cccc-hhhhccceeeccccccccc-cc----cccccccchhhcccccccc---cccccccccee
Confidence             56889999998887 5554 5678889999988887752 22    2345666777766554322   12456677888


Q ss_pred             eecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC
Q 045270          232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG  311 (440)
Q Consensus       232 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  311 (440)
                      +.+.++....++..  ....+.+...++.+. ..+. .  ...+.++.+.++++.....+.  ...++..+.+..+.+..
T Consensus       167 L~l~~n~~~~~~~~--~~~~~~l~~~~~~~~-~~~~-~--~~l~~L~~l~l~~n~~~~~~~--~~~~l~~~~~~~~~~~~  238 (353)
T d1jl5a_         167 IYADNNSLKKLPDL--PLSLESIVAGNNILE-ELPE-L--QNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTD  238 (353)
T ss_dssp             EECCSSCCSSCCCC--CTTCCEEECCSSCCS-SCCC-C--TTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSC
T ss_pred             cccccccccccccc--ccccccccccccccc-cccc-c--ccccccccccccccccccccc--ccccccccccccccccc
Confidence            88888877665542  122334455444332 2222 1  233457777777776655432  34556666666665543


Q ss_pred             cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccc
Q 045270          312 NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLL  391 (440)
Q Consensus       312 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L  391 (440)
                      . ...+..+...++..+.+.+ +    ..........++..+.+.+.    ...+++|++|++++|+++.+|..  .++|
T Consensus       239 ~-~~~~~~l~~~~~~~~~~~~-l----~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~lp~~--~~~L  306 (353)
T d1jl5a_         239 L-PELPQSLTFLDVSENIFSG-L----SELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIELPAL--PPRL  306 (353)
T ss_dssp             C-CCCCTTCCEEECCSSCCSE-E----SCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSCCCCC--CTTC
T ss_pred             c-ccccccccccccccccccc-c----ccccchhcccccccCccccc----cccCCCCCEEECCCCccCccccc--cCCC
Confidence            2 2334456666665544431 1    11123344555555555432    23467899999999999888753  4679


Q ss_pred             cEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCC
Q 045270          392 QTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL  439 (440)
Q Consensus       392 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  439 (440)
                      +.|++++|+++. +|+   .+++|+.|++++|+++ .+|+....+..|
T Consensus       307 ~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~-~lp~~~~~L~~L  349 (353)
T d1jl5a_         307 ERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR-EFPDIPESVEDL  349 (353)
T ss_dssp             CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCCCTTCCEE
T ss_pred             CEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC-CCCccccccCee
Confidence            999999999884 443   3568999999999976 566555455444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-20  Score=176.00  Aligned_cols=394  Identities=21%  Similarity=0.138  Sum_probs=203.8

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCC---ccccchhcCCCCcEEEcccCccccCC----ccccc-
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGT---QIPSKLANISSLTYLNLSDAGFAGHI----PLQIS-   93 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~-   93 (440)
                      ++++||++++++++..-. ..+..+++++.|++++|.+...   .++.++..+++|++|+|++|.+....    ...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~-~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHH-HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            588999999998753211 1467889999999999987642   14566778899999999999875322    22222 


Q ss_pred             ccccCceecCCCCcccCccc---hhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc--
Q 045270           94 SMARLVALDFSFNQFSGSIS---SIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS--  168 (440)
Q Consensus        94 ~l~~L~~L~L~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~--  168 (440)
                      ...+|++|++++|.+++...   ...+..+++|++|++++|.+.+.....+....   ....................  
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l---~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH---TSTTCCCCEEECTTSCCBGGGH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcc---cccccccccccccccccchhhh
Confidence            23579999999998864331   12456778899999988887633222221110   00112233333333222210  


Q ss_pred             --cccccccccCccEEeccccccccccc---hhhH-hcCCCCcEEEcCCCcccccCCc---cccCCccccceeecCCCCC
Q 045270          169 --IPVSVFELKKLTSLLLSSNNLHGTVQ---LDKI-LNLGNLAKLDLSYNSLAVDESS---RNYSFSPMLELLNLASCKL  239 (440)
Q Consensus       169 --~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~-~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l  239 (440)
                        ....+.....++.+.++++.......   ...+ ........+.+..+.+......   ......+.++.+.+.++.+
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence              01122334566677776665431100   0111 1223455566666544322111   1122345566666666644


Q ss_pred             CC------CCC-CcccCcccEEeccCcccccccCcccc--cccccceeEEEccCcccccccCCccCCceeEEEcCCcccc
Q 045270          240 RE------IPN-LKNQSQLQYLYLSENQISREIPNWIW--RVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR  310 (440)
Q Consensus       240 ~~------l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (440)
                      ..      ++. ......++.+++++|.+.........  ....+.++.+++++|.+......              .+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~--------------~l~  304 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--------------LLC  304 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--------------HHH
T ss_pred             cccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------hhh
Confidence            21      111 33445566666666655322111110  01122344444444443211000              000


Q ss_pred             CcccCCCCCccEEEccCCcccccCCccc---cccCCCcceEecccccccccc----hhhhh-ccCCCCEEEcCCCcCCCC
Q 045270          311 GNIHQLPNNLIYIDFSNNNFTSSIPADT---GNFMPRLRYFCAANNGLTGII----PASLC-NATTLSLLDLSNNSFMKK  382 (440)
Q Consensus       311 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~----~~~~~-~~~~L~~L~l~~n~i~~~  382 (440)
                      .........|+.+++++|.+.......+   ....++|++|++++|.+++..    ++.+. ..+.|++|++++|.+++.
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence            0111122456666776666542221111   122567777777777775432    22222 345677888887777653


Q ss_pred             Cc-----hhh-hccccEEECCCCcccCCchhhh----h-cCCCCcEEECCCCcccccCcccc
Q 045270          383 SD-----AFL-NCLLQTLDLNGNRLQGTVPKSI----A-NCKMLEVLNLGNNQFSDKFPCWL  433 (440)
Q Consensus       383 ~~-----~~~-~~~L~~L~l~~n~~~~~~~~~~----~-~l~~L~~L~l~~n~~~~~~~~~l  433 (440)
                      ..     .+. .++|++|+|++|++++.+...+    . +...|+.|++.++.+.+..++.+
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            21     111 2457888888887776544333    2 33468888888888776655543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.2e-20  Score=177.88  Aligned_cols=379  Identities=18%  Similarity=0.159  Sum_probs=225.8

Q ss_pred             CceEEEeeccceeecccCC--CccccccCCCCeEEecCCccCCCc---cccchh-cCCCCcEEEcccCccccC----Ccc
Q 045270           21 GHVIGLDLSTESISGGIEN--AASLFSLHYLRSLNLARTSFNGTQ---IPSKLA-NISSLTYLNLSDAGFAGH----IPL   90 (440)
Q Consensus        21 ~~l~~L~l~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~---l~~~~~-~l~~L~~L~l~~~~~~~~----~~~   90 (440)
                      +++++|+|++|.++.....  +..+..+++|++|++++|.+....   +.+.+. ...+|++|++++|.+++.    ++.
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            6789999999988742211  114678999999999999885421   223332 235799999999998743    455


Q ss_pred             cccccccCceecCCCCcccCccchhhhc----ccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC
Q 045270           91 QISSMARLVALDFSFNQFSGSISSIRWE----HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR  166 (440)
Q Consensus        91 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~  166 (440)
                      ++..++.|++|++++|.+.+........    ......................+...    ......++.+.++++...
T Consensus       107 ~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~ls~~~~~  182 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV----LRAKPDFKELTVSNNDIN  182 (460)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH----HHHCTTCCEEECCSSBCH
T ss_pred             hhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccc----cccccccccccccccccc
Confidence            6778999999999999876432211111    11223333333332221100000000    022356788888877654


Q ss_pred             Cccc----ccc-ccccCccEEecccccccccc---chhhHhcCCCCcEEEcCCCcccccC----CccccCCccccceeec
Q 045270          167 GSIP----VSV-FELKKLTSLLLSSNNLHGTV---QLDKILNLGNLAKLDLSYNSLAVDE----SSRNYSFSPMLELLNL  234 (440)
Q Consensus       167 ~~~~----~~~-~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l  234 (440)
                      ....    ..+ ........+.+.++......   ....+...+.++.+.+.++.+....    ..........++.+++
T Consensus       183 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l  262 (460)
T d1z7xw1         183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  262 (460)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             cccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccc
Confidence            2111    111 12235567777776553211   1233456788999999998764321    1122345678999999


Q ss_pred             CCCCCCCCCC------CcccCcccEEeccCcccccccCccccc---ccccceeEEEccCcccccccCCccCCceeEEEcC
Q 045270          235 ASCKLREIPN------LKNQSQLQYLYLSENQISREIPNWIWR---VSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLS  305 (440)
Q Consensus       235 ~~~~l~~l~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  305 (440)
                      ++|.+...+.      +...+.++.+++++|.+.......+..   .....++.+.++++.+......    .+      
T Consensus       263 ~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~----~l------  332 (460)
T d1z7xw1         263 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS----HF------  332 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH----HH------
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhh----hc------
Confidence            9998763322      556788999999999886433322211   1122355555554443321100    00      


Q ss_pred             CccccCcccCCCCCccEEEccCCccccc----CCccccccCCCcceEeccccccccc----chhhhhccCCCCEEEcCCC
Q 045270          306 SHQLRGNIHQLPNNLIYIDFSNNNFTSS----IPADTGNFMPRLRYFCAANNGLTGI----IPASLCNATTLSLLDLSNN  377 (440)
Q Consensus       306 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n  377 (440)
                           .......++|++|+|++|.+.+.    ++..+....+.|++|++++|.+++.    +++.+..+++|++|+|++|
T Consensus       333 -----~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         333 -----SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  407 (460)
T ss_dssp             -----HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             -----ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC
Confidence                 00111234788888888887532    2222233356799999999999753    3455677899999999999


Q ss_pred             cCCCCCchhh-------hccccEEECCCCcccCCchhh----hhcCCCCcEE
Q 045270          378 SFMKKSDAFL-------NCLLQTLDLNGNRLQGTVPKS----IANCKMLEVL  418 (440)
Q Consensus       378 ~i~~~~~~~~-------~~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L  418 (440)
                      ++++.....+       .+.|+.|++.++.+.......    ....|+|+.|
T Consensus       408 ~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         408 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             cCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            9876422221       235999999999988654433    3567888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=9.1e-18  Score=142.00  Aligned_cols=203  Identities=18%  Similarity=0.251  Sum_probs=126.4

Q ss_pred             EEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCC
Q 045270           25 GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS  104 (440)
Q Consensus        25 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~  104 (440)
                      .++++.+++++.    ..+..+.+|+.|++.+|.+..  + +.+..+++|++|++++|.+.+..  .+.++++|++++++
T Consensus        23 ~~~l~~~~~~d~----~~~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~   93 (227)
T d1h6ua2          23 KIAAGKSNVTDT----VTQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELS   93 (227)
T ss_dssp             HHHTTCSSTTSE----ECHHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECC
T ss_pred             HHHhCCCCcCCc----CCHHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccc
Confidence            344544444431    245667777777777777653  3 34677777788887777776332  36777777777777


Q ss_pred             CCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEec
Q 045270          105 FNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLL  184 (440)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  184 (440)
                      +|.++ .++  .+..+++|+.++++++...+..+  +        ...+.++.+.++.+.+..  ...+..+++|++|.+
T Consensus        94 ~n~~~-~i~--~l~~l~~L~~l~l~~~~~~~~~~--~--------~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l  158 (227)
T d1h6ua2          94 GNPLK-NVS--AIAGLQSIKTLDLTSTQITDVTP--L--------AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSI  158 (227)
T ss_dssp             SCCCS-CCG--GGTTCTTCCEEECTTSCCCCCGG--G--------TTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEEC
T ss_pred             ccccc-ccc--cccccccccccccccccccccch--h--------ccccchhhhhchhhhhch--hhhhccccccccccc
Confidence            77765 333  25677777777777776642211  1        122566677776666542  223556677777777


Q ss_pred             cccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEecc
Q 045270          185 SSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS  257 (440)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~  257 (440)
                      .+|.+.. ..  .+.++++|+.|++++|.++....   +..+++|++|++++|+++.++.+..+++|+.|+++
T Consensus       159 ~~n~~~~-~~--~l~~l~~L~~L~Ls~n~l~~l~~---l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         159 GNAQVSD-LT--PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             ccccccc-ch--hhcccccceecccCCCccCCChh---hcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            7776642 22  25667777777777776654322   45566777777777777776666677777777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3e-17  Score=138.80  Aligned_cols=187  Identities=20%  Similarity=0.241  Sum_probs=110.8

Q ss_pred             hcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCccccccccccee
Q 045270          199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLH  278 (440)
Q Consensus       199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  278 (440)
                      ..+.+|+.|++.++.++...   .+..+++|+.|++++|.++.++.+..+++++.+++++|.+                 
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~---~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~-----------------   97 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL-----------------   97 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC-----------------
T ss_pred             HHcCCcCEEECCCCCCCcch---hHhcCCCCcEeecCCceeeccccccccccccccccccccc-----------------
Confidence            34455566666666554331   1445555666666665555554455555555555555544                 


Q ss_pred             EEEccCcccccccCCccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccc
Q 045270          279 CLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG  357 (440)
Q Consensus       279 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  357 (440)
                               +.+.....++.|+++.++++...... ....+.+..+.++++.+....  .+ ..+++|+.|++.+|.+.+
T Consensus        98 ---------~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~-~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2          98 ---------KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PL-AGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             ---------SCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GG-GGCTTCCEEECCSSCCCC
T ss_pred             ---------cccccccccccccccccccccccccchhccccchhhhhchhhhhchhh--hh-cccccccccccccccccc
Confidence                     33333334455555555554443322 122446666666666654211  12 237778888888887764


Q ss_pred             cchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECC
Q 045270          358 IIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLG  421 (440)
Q Consensus       358 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  421 (440)
                      ..  .+..+++|++|++++|++++++.....++|++|++++|++++..+  ++++++|+.|+++
T Consensus       166 ~~--~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         166 LT--PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             ch--hhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            32  377788888888888888777554445668888888888775433  7788888888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=136.72  Aligned_cols=199  Identities=15%  Similarity=0.156  Sum_probs=93.6

Q ss_pred             CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCC-cccccccccCceecCCC-CcccCccchhhhcccccce
Q 045270           47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHI-PLQISSMARLVALDFSF-NQFSGSISSIRWEHLLNLV  124 (440)
Q Consensus        47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~~l~~L~  124 (440)
                      +++++|++++|++... .+.+|.++++|++|++++|.+...+ +.+|.+++.++++.+.. +.+. ..+...+..+++|+
T Consensus        29 ~~l~~L~Ls~n~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESCCCCEE-CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCC
T ss_pred             CCCCEEECcCCcCCcc-ChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-cccccccccccccc
Confidence            3556666666555332 2234555666666666665554322 33455555666655443 2332 33333455566666


Q ss_pred             EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccc-cCccEEeccccccccccchhhHhcCCC
Q 045270          125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFEL-KKLTSLLLSSNNLHGTVQLDKILNLGN  203 (440)
Q Consensus       125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~  203 (440)
                      +++++++.+.. .+. ...+     ...+.+..+...++.+....+..+..+ ..++.|.+.++.+. .++...+. .++
T Consensus       107 ~l~l~~~~l~~-~~~-~~~~-----~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~-~~~  177 (242)
T d1xwdc1         107 YLLISNTGIKH-LPD-VHKI-----HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFN-GTQ  177 (242)
T ss_dssp             EEEEESCCCCS-CCC-CTTT-----CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTT-TCC
T ss_pred             ccccchhhhcc-ccc-cccc-----ccccccccccccccccccccccccccccccceeeeccccccc-cccccccc-chh
Confidence            66666655542 211 1111     111334444444444432222333333 25555666665554 33333332 233


Q ss_pred             CcEE-EcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEecc
Q 045270          204 LAKL-DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLS  257 (440)
Q Consensus       204 L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~  257 (440)
                      ++.+ .+.+|.++...... +..+++|+.|++++|+++.+|.  +..++.|+.+++.
T Consensus       178 l~~~~~l~~n~l~~l~~~~-f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         178 LDELNLSDNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EEEEECTTCTTCCCCCTTT-TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             hhccccccccccccccHHH-hcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            3333 34445554443332 5556666666666666666654  5555555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.4e-16  Score=128.51  Aligned_cols=166  Identities=20%  Similarity=0.290  Sum_probs=112.2

Q ss_pred             cCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc
Q 045270           70 NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN  149 (440)
Q Consensus        70 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~  149 (440)
                      .+.+|++|+++++.+.. ++ .+..+++|++|++++|++++ ++.  ++.+++|++|++++|+++ .++ .+.       
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~~--~~~l~~L~~L~l~~n~i~-~l~-~l~-------  109 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVK-DLS-SLK-------  109 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC-CGG-GGT-------
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-ccc--cccCcccccccccccccc-ccc-ccc-------
Confidence            45677777777777663 32 46677777777777777763 332  466777777777777775 333 232       


Q ss_pred             cCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccc
Q 045270          150 ASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPML  229 (440)
Q Consensus       150 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  229 (440)
                       .+++|+.++++++.+. .+ ..+..+++++.+.+.++.+.. .  ..+..+++|+.+++++|++.....   +..+++|
T Consensus       110 -~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~-~--~~~~~l~~L~~l~l~~n~l~~i~~---l~~l~~L  180 (210)
T d1h6ta2         110 -DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKL  180 (210)
T ss_dssp             -TCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTC
T ss_pred             -cccccccccccccccc-cc-ccccccccccccccccccccc-c--cccccccccccccccccccccccc---ccCCCCC
Confidence             2367777777777665 22 346677778888887777652 2  235667788888888887764322   5667788


Q ss_pred             ceeecCCCCCCCCCCCcccCcccEEeccC
Q 045270          230 ELLNLASCKLREIPNLKNQSQLQYLYLSE  258 (440)
Q Consensus       230 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~  258 (440)
                      +.|++++|.++.++.+..+++|+.|++++
T Consensus       181 ~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             CEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence            88888888888777777888888888753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.4e-15  Score=125.38  Aligned_cols=155  Identities=26%  Similarity=0.265  Sum_probs=101.9

Q ss_pred             eeEEEccCcccccccCCccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccc
Q 045270          277 LHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL  355 (440)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  355 (440)
                      ++.|+++++.+.++.+...+++|++|++++|++.+.. ...+++|++|++++|.+. .++.  +..++.|+.|+++++..
T Consensus        42 l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2          42 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA-DITP--LANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCC
T ss_pred             CCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccc-cccc--ccccccccccccccccc
Confidence            4444444444444444444555556666555554432 223456777777777665 3432  23378888888888877


Q ss_pred             cccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccC
Q 045270          356 TGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYD  435 (440)
Q Consensus       356 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  435 (440)
                      ...  ..+..+++|+.|++++|.+..++......+|+.|++.+|++++..  .++++++|+.|++++|++++ ++ .++.
T Consensus       119 ~~~--~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~  192 (199)
T d2omxa2         119 TDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAK  192 (199)
T ss_dssp             CCC--GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred             ccc--cccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccC
Confidence            643  347778888888888888877765555667888888888887543  37888999999999998875 33 4677


Q ss_pred             CCCCC
Q 045270          436 APSLH  440 (440)
Q Consensus       436 ~~~L~  440 (440)
                      +++|+
T Consensus       193 L~~L~  197 (199)
T d2omxa2         193 LTNLE  197 (199)
T ss_dssp             CTTCS
T ss_pred             CCCCC
Confidence            77765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.7e-15  Score=125.94  Aligned_cols=167  Identities=20%  Similarity=0.255  Sum_probs=117.7

Q ss_pred             cccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccc
Q 045270           44 FSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL  123 (440)
Q Consensus        44 ~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L  123 (440)
                      ..+..|++|+++++.+...   ..+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++ .++  .+..+++|
T Consensus        43 ~~L~~L~~L~l~~~~i~~l---~~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L  114 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS--SLKDLKKL  114 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG--GGTTCTTC
T ss_pred             HHhcCccEEECcCCCCCCc---hhHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc--cccccccc
Confidence            3567788888888877543   246778888888888888774 33 3677888888888888876 343  36778888


Q ss_pred             eEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCC
Q 045270          124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN  203 (440)
Q Consensus       124 ~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  203 (440)
                      +.+++++|.+. .++ .+.        .++.++.++++++.+..  +..+..+++|+.+.+++|.+. .+.  .+.++++
T Consensus       115 ~~L~l~~~~~~-~~~-~l~--------~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-~i~--~l~~l~~  179 (210)
T d1h6ta2         115 KSLSLEHNGIS-DIN-GLV--------HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV--PLAGLTK  179 (210)
T ss_dssp             CEEECTTSCCC-CCG-GGG--------GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCG--GGTTCTT
T ss_pred             ccccccccccc-ccc-ccc--------ccccccccccccccccc--ccccccccccccccccccccc-ccc--cccCCCC
Confidence            88888888765 222 232        33678888888887762  334667788888888888876 333  3678888


Q ss_pred             CcEEEcCCCcccccCCccccCCccccceeecCC
Q 045270          204 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS  236 (440)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  236 (440)
                      |+.|++++|.++...   .+..+++|+.|++++
T Consensus       180 L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKNHISDLR---ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCCBCG---GGTTCTTCSEEEEEE
T ss_pred             CCEEECCCCCCCCCh---hhcCCCCCCEEEccC
Confidence            888888888876542   266778888888753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.8e-15  Score=127.96  Aligned_cols=185  Identities=14%  Similarity=0.112  Sum_probs=81.2

Q ss_pred             ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEccc-CccccCCcccccccccCce
Q 045270           22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARLVA  100 (440)
Q Consensus        22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~  100 (440)
                      ++++|++++|.++...+.  .|..+++|++|++++|.+...--+.+|.+++.++++.+.. +.+....+..|.++++|++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~--~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCCCEECTT--TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcCCccChh--Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            455555555555432222  4555555555555555443321123344555555555433 3343344444555555555


Q ss_pred             ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270          101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT  180 (440)
Q Consensus       101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  180 (440)
                      ++++++.+........+..++.+..+...++.+...-+..+..++       ..++.++++++.+. .++.......+++
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~-------~~l~~L~l~~n~l~-~i~~~~~~~~~l~  179 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------FESVILWLNKNGIQ-EIHNCAFNGTQLD  179 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB-------SSCEEEECCSSCCC-EECTTTTTTCCEE
T ss_pred             cccchhhhccccccccccccccccccccccccccccccccccccc-------ccceeeeccccccc-ccccccccchhhh
Confidence            555555544222222233344444444444444322222221111       24455555555554 2333333333333


Q ss_pred             EEe-ccccccccccchhhHhcCCCCcEEEcCCCccccc
Q 045270          181 SLL-LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVD  217 (440)
Q Consensus       181 ~L~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  217 (440)
                      ++. +.++.++ .++...|.++++|+.|++++|.++..
T Consensus       180 ~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         180 ELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             EEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             ccccccccccc-cccHHHhcCCCCCCEEECCCCcCCcc
Confidence            332 3334443 34444455555555555555555433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5e-15  Score=121.95  Aligned_cols=73  Identities=23%  Similarity=0.315  Sum_probs=47.8

Q ss_pred             CCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEE
Q 045270          342 MPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVL  418 (440)
Q Consensus       342 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  418 (440)
                      +++|+.|++++|.+...  ..+..+++|++|++.+|++++++.....++|++|++++|++++. + .++.+++|+.|
T Consensus       127 l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         127 LTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             hhhhHHhhhhhhhhccc--ccccccccccccccccccccCCccccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence            66777777777766532  24666777777777777776665433455677777777777643 2 46777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.3e-16  Score=135.38  Aligned_cols=90  Identities=14%  Similarity=0.045  Sum_probs=40.9

Q ss_pred             CCCcceEecccc-cccccchhhhhccCCCCEEEcCCC-cCCCCCch--hhhccccEEECCCCcccCCchhh-hhcCCCCc
Q 045270          342 MPRLRYFCAANN-GLTGIIPASLCNATTLSLLDLSNN-SFMKKSDA--FLNCLLQTLDLNGNRLQGTVPKS-IANCKMLE  416 (440)
Q Consensus       342 ~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~  416 (440)
                      +|+|++|++++| .+++.....+..+++|++|++++| .+++....  ...++|+.|++++| +.+..... ...+|+|+
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            455555555544 234344444555555555555554 23322111  11234555666555 33322222 34456554


Q ss_pred             EEECCCCcccccCcccccC
Q 045270          417 VLNLGNNQFSDKFPCWLYD  435 (440)
Q Consensus       417 ~L~l~~n~~~~~~~~~l~~  435 (440)
                         +..+.+++..+..+++
T Consensus       253 ---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         253 ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             ---ESCCCSCCTTCSSCSS
T ss_pred             ---ccCccCCCCCCCccCc
Confidence               3455565555554544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=3.2e-15  Score=122.35  Aligned_cols=123  Identities=24%  Similarity=0.325  Sum_probs=59.3

Q ss_pred             EcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC
Q 045270          303 DLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK  382 (440)
Q Consensus       303 ~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~  382 (440)
                      +.+++++...+...++++++|+|++|.+++.++...+..+++|+.|++++|.+....+..+..+++|++|++++|++..+
T Consensus        14 ~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l   93 (192)
T d1w8aa_          14 DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI   93 (192)
T ss_dssp             ECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred             EEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc
Confidence            33333333333333444555555555554334444433355555555555555544455555555555555555555554


Q ss_pred             Cchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcc
Q 045270          383 SDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF  425 (440)
Q Consensus       383 ~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  425 (440)
                      +...+  ..+|++|+|++|+++...+++|..+++|+.|++++|++
T Consensus        94 ~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            33222  23355555555555544444555555555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.2e-16  Score=135.43  Aligned_cols=87  Identities=20%  Similarity=0.132  Sum_probs=42.5

Q ss_pred             ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCc-ccCccchhhhcccccc
Q 045270           45 SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQ-FSGSISSIRWEHLLNL  123 (440)
Q Consensus        45 ~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~L  123 (440)
                      ....|++|+++++.+....+...+..+++|++|+++++.+.+..+..+..+++|++|++++|. +++......+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            334555566655555433233344555566666665555554444555555556666655542 2211111123344555


Q ss_pred             eEEEecCC
Q 045270          124 VYAVLSDN  131 (440)
Q Consensus       124 ~~L~l~~~  131 (440)
                      ++|++++|
T Consensus       124 ~~L~ls~c  131 (284)
T d2astb2         124 DELNLSWC  131 (284)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            55555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=3.3e-15  Score=122.27  Aligned_cols=127  Identities=24%  Similarity=0.305  Sum_probs=59.6

Q ss_pred             CeEEecCCccCCCccccchhcCCCCcEEEcccCcccc-CCcccccccccCceecCCCCcccCccchhhhcccccceEEEe
Q 045270           50 RSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAG-HIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVL  128 (440)
Q Consensus        50 ~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l  128 (440)
                      +.++.+++.+..  +|..+.  +++++|+|++|.++. ..+..|.++++|++|++++|.+. .++...+..+++|++|++
T Consensus        11 ~~v~Cs~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          11 TTVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CEEEEeCCCcCc--cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeee
Confidence            345555555532  444443  455556665555543 22333455555555555555555 223334455555555555


Q ss_pred             cCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEecccccc
Q 045270          129 SDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNL  189 (440)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  189 (440)
                      ++|++....+..+..+        ++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus        86 s~N~l~~l~~~~F~~l--------~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          86 GENKIKEISNKMFLGL--------HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSCCCCEECSSSSTTC--------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccccCHHHHhCC--------CcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            5555542222222222        3455555555555433333444444444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.5e-14  Score=107.34  Aligned_cols=103  Identities=23%  Similarity=0.295  Sum_probs=75.6

Q ss_pred             EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270           24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF  103 (440)
Q Consensus        24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  103 (440)
                      |+|++++|.++. .+   .+..+++|++|++++|.+..  +|..++.+++|++|++++|.+. .+| .+..+++|++|++
T Consensus         1 R~L~Ls~n~l~~-l~---~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC---HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSS-CC---CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCC-Cc---ccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccccc-ccC-ccccccccCeEEC
Confidence            568888888863 22   47788888888888888753  6777788888888888888887 444 4778888888888


Q ss_pred             CCCcccCccchhhhcccccceEEEecCCccC
Q 045270          104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLN  134 (440)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  134 (440)
                      ++|++........+..+++|+.+++++|.+.
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            8888774443345677777777777777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=9.7e-14  Score=104.02  Aligned_cols=104  Identities=22%  Similarity=0.298  Sum_probs=80.4

Q ss_pred             cEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCc
Q 045270          321 IYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNR  400 (440)
Q Consensus       321 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~  400 (440)
                      +.|++++|.++ .++. +.. ++.|++|++++|.+++ .|..+..+++|+.|++++|.|++++.....++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~-l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCcc-ccc-CCCCCEEECCCCccCc-chhhhhhhhcccccccccccccccCccccccccCeEECCCCc
Confidence            46778888887 5553 333 7888888888888884 566788888888888888888888765556678899998888


Q ss_pred             ccCCc-hhhhhcCCCCcEEECCCCccccc
Q 045270          401 LQGTV-PKSIANCKMLEVLNLGNNQFSDK  428 (440)
Q Consensus       401 ~~~~~-~~~~~~l~~L~~L~l~~n~~~~~  428 (440)
                      +.+.. +..+..+++|+.|++++|++++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            88654 35688889999999999988643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.4e-14  Score=110.93  Aligned_cols=122  Identities=22%  Similarity=0.160  Sum_probs=71.6

Q ss_pred             cCCceeEEEcCCccccCcc--cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEE
Q 045270          295 SIPALRFIDLSSHQLRGNI--HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL  372 (440)
Q Consensus       295 ~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  372 (440)
                      .+.++++|++++|++....  ...+++|+.|++++|.+. .++. + ..+++|++|++++|.++...+..+..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l~~-~-~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDG-F-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-EECC-C-CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCC-ccCC-c-ccCcchhhhhcccccccCCCccccccccccccc
Confidence            4556677777777665432  223456777777777665 3432 2 236677777777777665544455666777777


Q ss_pred             EcCCCcCCCCCchh-h--hccccEEECCCCcccCCc---hhhhhcCCCCcEEE
Q 045270          373 DLSNNSFMKKSDAF-L--NCLLQTLDLNGNRLQGTV---PKSIANCKMLEVLN  419 (440)
Q Consensus       373 ~l~~n~i~~~~~~~-~--~~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~  419 (440)
                      ++++|++.+++... +  .++|+.|++++|+++...   +..++.+|+|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777666654311 1  244677777777665432   23456667776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=4.7e-14  Score=126.81  Aligned_cols=247  Identities=21%  Similarity=0.217  Sum_probs=147.0

Q ss_pred             ccccccccCccEEeccccccccccch----hhHhcCCCCcEEEcCCCcccccCC---------ccccCCccccceeecCC
Q 045270          170 PVSVFELKKLTSLLLSSNNLHGTVQL----DKILNLGNLAKLDLSYNSLAVDES---------SRNYSFSPMLELLNLAS  236 (440)
Q Consensus       170 ~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~~~L~~L~l~~  236 (440)
                      ...+.....++.|++++|.+. ....    ..+...++|+.+++.++.......         ...+..+++|+.|++++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~-~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEEC-HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhhCCCCCEEECcCCcCC-HHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344556788888888888764 2221    224456778888887665432111         01133456677777777


Q ss_pred             CCCCCCCC------CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcccc
Q 045270          237 CKLREIPN------LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR  310 (440)
Q Consensus       237 ~~l~~l~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  310 (440)
                      |.+.....      +...++|+.|++++|.+.......+...    +..+...       ......+.++.+.++++.+.
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~----l~~~~~~-------~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA----LQELAVN-------KKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH----HHHHHHH-------HHHHTCCCCCEEECCSSCCT
T ss_pred             cccccccccchhhhhcccccchheeccccccccccccccccc----ccccccc-------cccccCcccceeeccccccc
Confidence            76653221      3455667777777665532211111100    0000000       00012455666666666554


Q ss_pred             Cccc-------CCCCCccEEEccCCcccccC----CccccccCCCcceEeccccccccc----chhhhhccCCCCEEEcC
Q 045270          311 GNIH-------QLPNNLIYIDFSNNNFTSSI----PADTGNFMPRLRYFCAANNGLTGI----IPASLCNATTLSLLDLS  375 (440)
Q Consensus       311 ~~~~-------~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~  375 (440)
                      ....       ...+.++.|++++|.+....    ........++|+.|++++|.++..    +...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            3211       12457888888888775321    112233478999999999988643    34566788999999999


Q ss_pred             CCcCCCCCchhh--------hccccEEECCCCcccCCch----hhh-hcCCCCcEEECCCCccccc
Q 045270          376 NNSFMKKSDAFL--------NCLLQTLDLNGNRLQGTVP----KSI-ANCKMLEVLNLGNNQFSDK  428 (440)
Q Consensus       376 ~n~i~~~~~~~~--------~~~L~~L~l~~n~~~~~~~----~~~-~~l~~L~~L~l~~n~~~~~  428 (440)
                      +|.|.+......        ...|++|++++|.+.....    ..+ .++++|+.|++++|++.+.
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            999876522221        2349999999999886443    334 3688999999999999754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.5e-13  Score=107.01  Aligned_cols=100  Identities=21%  Similarity=0.242  Sum_probs=48.4

Q ss_pred             cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceee
Q 045270          154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN  233 (440)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  233 (440)
                      +|++|++++|.+. .+ ..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+........+..+++|+.++
T Consensus        42 ~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~  118 (162)
T d1a9na_          42 QFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  118 (162)
T ss_dssp             CCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             cCCEEECCCCCCC-cc-CCcccCcchhhhhccccccc-CCCccccccccccccceeccccccccccccccccccccchhh
Confidence            4444444444443 22 12344445555555555444 333333444555555555555554333222244555566666


Q ss_pred             cCCCCCCCCCC-----CcccCcccEEec
Q 045270          234 LASCKLREIPN-----LKNQSQLQYLYL  256 (440)
Q Consensus       234 l~~~~l~~l~~-----~~~~~~L~~L~l  256 (440)
                      +.+|.++..+.     +..+|+|+.||.
T Consensus       119 l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         119 ILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cCCCccccccchHHHHHHHCCCcCeeCC
Confidence            66665555543     455667776663

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=1.6e-13  Score=123.35  Aligned_cols=93  Identities=15%  Similarity=0.140  Sum_probs=55.5

Q ss_pred             cccccCCCCeEEecCCccCCCc---cccchhcCCCCcEEEcccCcccc---C-------CcccccccccCceecCCCCcc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQ---IPSKLANISSLTYLNLSDAGFAG---H-------IPLQISSMARLVALDFSFNQF  108 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~---~-------~~~~~~~l~~L~~L~L~~~~~  108 (440)
                      .+.....|++|++++|.+....   +...+...++|+.|+++++....   .       +...+..+++|++|+|++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            5667788888888888765421   33445667888888887664321   1       122334566777777777766


Q ss_pred             cCccc---hhhhcccccceEEEecCCccC
Q 045270          109 SGSIS---SIRWEHLLNLVYAVLSDNSLN  134 (440)
Q Consensus       109 ~~~~~---~~~~~~l~~L~~L~l~~~~~~  134 (440)
                      .+...   ...+...++|++|++++|.+.
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             ccccccchhhhhcccccchheeccccccc
Confidence            53321   112345566777777666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=3.4e-13  Score=110.18  Aligned_cols=103  Identities=19%  Similarity=0.202  Sum_probs=52.1

Q ss_pred             CCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEc
Q 045270          296 IPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDL  374 (440)
Q Consensus       296 ~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  374 (440)
                      +++|++|++++|++.... ...+++|+.|++++|.++ .++..... ++.|+.|++++|.++..  ..+..+++|+.|++
T Consensus        47 L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L  122 (198)
T d1m9la_          47 LKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIASL--SGIEKLVNLRVLYM  122 (198)
T ss_dssp             TTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEEECSEEECCCH--HHHHHHHHSSEEEE
T ss_pred             ccccceeECcccCCCCcccccCCccccChhhcccccc-cccccccc-ccccccccccccccccc--cccccccccccccc
Confidence            556666666666554321 112445666666666554 44432222 44566666666655532  23555556666666


Q ss_pred             CCCcCCCCCch--h-hhccccEEECCCCccc
Q 045270          375 SNNSFMKKSDA--F-LNCLLQTLDLNGNRLQ  402 (440)
Q Consensus       375 ~~n~i~~~~~~--~-~~~~L~~L~l~~n~~~  402 (440)
                      ++|+|++++..  + ..++|+.|++++|++.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccchhccccccccccCCCccceeecCCCccc
Confidence            66655554321  1 1234666666665554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=6.9e-13  Score=108.32  Aligned_cols=86  Identities=27%  Similarity=0.325  Sum_probs=42.0

Q ss_pred             cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270           42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL  121 (440)
Q Consensus        42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~  121 (440)
                      ++..+++|++|++++|.+..  ++ .+.++++|++|++++|.+. .+|..+..+++|++|++++|.++ .++  .+..++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~--~~~~l~  115 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS--GIEKLV  115 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH--HHHHHH
T ss_pred             HHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc--cccccc
Confidence            35555555555555555532  22 3555555555555555554 33333333445555555555544 222  244455


Q ss_pred             cceEEEecCCccC
Q 045270          122 NLVYAVLSDNSLN  134 (440)
Q Consensus       122 ~L~~L~l~~~~~~  134 (440)
                      +|+.|++++|.++
T Consensus       116 ~L~~L~L~~N~i~  128 (198)
T d1m9la_         116 NLRVLYMSNNKIT  128 (198)
T ss_dssp             HSSEEEESEEECC
T ss_pred             cccccccccchhc
Confidence            5555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.7e-11  Score=91.53  Aligned_cols=138  Identities=19%  Similarity=0.165  Sum_probs=90.7

Q ss_pred             eEEEcCCccccCcccCC--CCCccEEEccCCc-ccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCC
Q 045270          300 RFIDLSSHQLRGNIHQL--PNNLIYIDFSNNN-FTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSN  376 (440)
Q Consensus       300 ~~L~l~~~~~~~~~~~~--~~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  376 (440)
                      ..++..++...+.+...  .+++++|++.+++ ++ .++...+..+++|+.|++++|+++.+.+..|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34444444444333222  3578888887664 65 67766666689999999999999988888899999999999999


Q ss_pred             CcCCCCCchhh-hccccEEECCCCcccCC-chhhhhcCCCCcEEECCCCcccccCcccccCCCC
Q 045270          377 NSFMKKSDAFL-NCLLQTLDLNGNRLQGT-VPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPS  438 (440)
Q Consensus       377 n~i~~~~~~~~-~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~  438 (440)
                      |+++.++...+ ...|+.|+|++|++... ...++..........+..+.+.-..|..+.++|.
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p~  153 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPN  153 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred             CCCcccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCCc
Confidence            99998866544 45699999999988632 2222222111222233345555556666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.6e-10  Score=87.93  Aligned_cols=109  Identities=20%  Similarity=0.149  Sum_probs=78.0

Q ss_pred             cCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCc-cccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270           46 LHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG-FAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV  124 (440)
Q Consensus        46 l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~  124 (440)
                      +...+.++++++....  .|..+..+++|++|++.++. ++...+.+|.++++|++|++++|+++ .++..+|..+++|+
T Consensus         7 c~~~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~   83 (156)
T d2ifga3           7 PHGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS   83 (156)
T ss_dssp             CSSSSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCC
T ss_pred             cCCCCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Cccccccccccccc
Confidence            3445667777666643  56777788888888887654 66555667888888888888888887 55555778888888


Q ss_pred             EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC
Q 045270          125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR  166 (440)
Q Consensus       125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~  166 (440)
                      +|+|++|+++ .+|..++..        ..|+.|++++|++.
T Consensus        84 ~L~Ls~N~l~-~l~~~~~~~--------~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALE-SLSWKTVQG--------LSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCS-CCCSTTTCS--------CCCCEEECCSSCCC
T ss_pred             ceeccCCCCc-ccChhhhcc--------ccccccccCCCccc
Confidence            8888888887 666655433        35777777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1e-07  Score=74.24  Aligned_cols=84  Identities=24%  Similarity=0.261  Sum_probs=62.6

Q ss_pred             ccCCCcceEecccccccccc--hhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCch-------hh
Q 045270          340 NFMPRLRYFCAANNGLTGII--PASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVP-------KS  408 (440)
Q Consensus       340 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~-------~~  408 (440)
                      ..++.|++|++++|+++...  +..+..+++|+.|++++|.|.+++....  ...|++|++++|++.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            34889999999999888643  4567788999999999999998865443  3458899999998875433       23


Q ss_pred             hhcCCCCcEEECCCCcc
Q 045270          409 IANCKMLEVLNLGNNQF  425 (440)
Q Consensus       409 ~~~l~~L~~L~l~~n~~  425 (440)
                      +..+|+|+.||  |.++
T Consensus       142 ~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         142 RERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HTTSTTCCEET--TEEC
T ss_pred             HHHCCCCCEEC--cCCC
Confidence            56789998874  5554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.2e-07  Score=71.35  Aligned_cols=73  Identities=30%  Similarity=0.296  Sum_probs=52.3

Q ss_pred             cchhhhhccCCCCEEEcCCCcCCCCCch---h-hhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCc
Q 045270          358 IIPASLCNATTLSLLDLSNNSFMKKSDA---F-LNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP  430 (440)
Q Consensus       358 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~---~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  430 (440)
                      .....+..+++|++|++++|+|++++..   + ..++|+.|++++|.+.+..+..+....+|+.|++++|+++....
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            3444556788899999999988877432   1 24568899999998886655444555678888899988876543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=1.6e-05  Score=61.74  Aligned_cols=84  Identities=13%  Similarity=0.147  Sum_probs=51.4

Q ss_pred             CCCcceEeccccccccc----chhhhhccCCCCEEEcCCCcCCCCCchhh------hccccEEECCCCcccCC-------
Q 045270          342 MPRLRYFCAANNGLTGI----IPASLCNATTLSLLDLSNNSFMKKSDAFL------NCLLQTLDLNGNRLQGT-------  404 (440)
Q Consensus       342 ~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~------~~~L~~L~l~~n~~~~~-------  404 (440)
                      .+.|++|++++|.+...    ..+.+...+.|++|++++|.+.+.....+      ..+|++|++++|.+...       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            45677777777766532    23344556777777777777765422111      23377888877754432       


Q ss_pred             chhhhhcCCCCcEEECCCCcc
Q 045270          405 VPKSIANCKMLEVLNLGNNQF  425 (440)
Q Consensus       405 ~~~~~~~l~~L~~L~l~~n~~  425 (440)
                      +...+...++|+.|+++.+..
T Consensus       123 l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCccEeeCcCCCc
Confidence            234455678888888877643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.69  E-value=7.6e-06  Score=63.66  Aligned_cols=41  Identities=10%  Similarity=0.203  Sum_probs=18.8

Q ss_pred             ccCCCCeEEecCCc-cCCCc---cccchhcCCCCcEEEcccCccc
Q 045270           45 SLHYLRSLNLARTS-FNGTQ---IPSKLANISSLTYLNLSDAGFA   85 (440)
Q Consensus        45 ~l~~L~~L~l~~~~-~~~~~---l~~~~~~l~~L~~L~l~~~~~~   85 (440)
                      +.+.|++|++++++ +....   +..++...+.|++|++++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            34556666665432 32211   2223344455555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.25  E-value=3.2e-05  Score=59.95  Aligned_cols=41  Identities=10%  Similarity=0.046  Sum_probs=17.8

Q ss_pred             ccCCCCeEEecCC-ccCCCc---cccchhcCCCCcEEEcccCccc
Q 045270           45 SLHYLRSLNLART-SFNGTQ---IPSKLANISSLTYLNLSDAGFA   85 (440)
Q Consensus        45 ~l~~L~~L~l~~~-~~~~~~---l~~~~~~l~~L~~L~l~~~~~~   85 (440)
                      +.+.|++|+++++ .+....   +..++...++|++|++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            3455555555542 232211   2223334455555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.16  E-value=8.7e-05  Score=57.39  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=64.9

Q ss_pred             CCccEEEccCC-cccccCCccc---cccCCCcceEecccccccccc----hhhhhccCCCCEEEcCCCcCCCCCchhh--
Q 045270          318 NNLIYIDFSNN-NFTSSIPADT---GNFMPRLRYFCAANNGLTGII----PASLCNATTLSLLDLSNNSFMKKSDAFL--  387 (440)
Q Consensus       318 ~~L~~L~L~~~-~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~--  387 (440)
                      +.|++|+++++ .++......+   ....+.|++|++++|.++...    ...+...++++.+++++|.+........  
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            45666666652 3332111111   123677888888888776442    3344566888888888887765422211  


Q ss_pred             ----hccccEEEC--CCCcccCC----chhhhhcCCCCcEEECCCCcc
Q 045270          388 ----NCLLQTLDL--NGNRLQGT----VPKSIANCKMLEVLNLGNNQF  425 (440)
Q Consensus       388 ----~~~L~~L~l--~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~  425 (440)
                          .++|+.++|  ++|.+.+.    +...+...++|+.|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                234776655  45666653    334566789999999988754