Citrus Sinensis ID: 045288

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------

MGSLSVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGYLGNNPLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVDKYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLVG

ccccccccccEEEccccccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHcccccccccEEEccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccEEcccccccccccccccccccccccccEEEEccccccEEEEcccccEEEcccccccEEEEccccccccc

ccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEEEccccccHHHHEEEEcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEEEEccccccccccEccccccccccEEEEEEccccccEEEEEcccEEEEEccccccEEEEEcccEEEcc

mgslsvpklpvvnlskenlkpgasswlgTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELfnlpieikeknvsekpyygylgnnplvpaiyegmgvdyantiegtqnftnliwpegnenfCKTVVSYSRLVSELEQMVKRMVFESygvdkyydsVLESSTYLLRIMKyrcpetneknlgcdvhtdkSFITVLHQNevngleirtkdgcwigfddptpssfivlagdaflvg

mgslsvpklpvvnlskenlkpgasswlgTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGYLGNNPLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFesygvdkyydsVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLVG

*************************WLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGYLGNNPLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVDKYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFL**

****SVPKLPVVNLSKENL****SSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIK*************GNNPLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVDKYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLVG

******PKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGYLGNNPLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVDKYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLVG

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		236	2.2.26 [Sep-21-2011]
Q9C971		355	Gibberellin 3-beta-dioxyg	no	no	0.889	0.591	0.276	5e-14
Q39111		378	Gibberellin 20 oxidase 2	no	no	0.949	0.592	0.261	2e-12
Q9XFR9		341	Gibberellin 2-beta-dioxyg	no	no	0.894	0.618	0.297	3e-11
Q9SVS8		349	Gibberellin 3-beta-dioxyg	no	no	0.817	0.553	0.258	1e-10
Q39103		358	Gibberellin 3-beta-dioxyg	no	no	0.860	0.567	0.263	3e-10
Q39110		377	Gibberellin 20 oxidase 1	no	no	0.902	0.564	0.242	4e-10
Q40062		339	2'-deoxymugineic-acid 2'-	N/A	no	0.885	0.616	0.252	1e-08
Q9LSW7		365	1-aminocyclopropane-1-car	no	no	0.885	0.572	0.245	1e-08
Q9SQ80		327	Gibberellin 2-beta-dioxyg	N/A	no	0.860	0.620	0.282	4e-08
Q05964		365	Naringenin,2-oxoglutarate	N/A	no	0.830	0.536	0.269	4e-08

>sp\|Q9C971\|G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1	Back alignment and function desciption

 Score = 78.2 bits (191), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 32/242 (13%)

Query: 9   LPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNL 68
           +PV++LS     P  ++ +G + K       +G F      +S +L + I S ++ LF++
Sbjct: 49  IPVIDLSN----PDVTTLIGDASKT------WGAFQIANHGISQKLLDDIESLSKTLFDM 98

Query: 69  PIEIK-EKNVSEKPYYGYLGNNPLVPAIYEGMGVDYANTI--EGTQNFTNLIWPEGNENF 125
           P E K E   S+K   GY    P +   +E        TI  +  +N  N +WP  +  +
Sbjct: 99  PSERKLEAASSDKGVSGY--GEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKY 156

Query: 126 CKTVVSYSRLVSELEQMVKRMVF---ESYGV---DKYYDSVLESSTY-----LLRIMKYR 174
           C  +  Y   V E+E++  R+++    S GV   D  +   LE S        +R+  Y 
Sbjct: 157 CGIIQEY---VDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHYP 213

Query: 175 -CPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAF 233
            CPE  E+ +G   HTD + +T+LHQ+   GL++  ++  W+   +P P   +V  GD F
Sbjct: 214 VCPEP-ERAMGLAAHTDSTILTILHQSNTGGLQVFREESGWVTV-EPAPGVLVVNIGDLF 271

Query: 234 LV 235
            +
Sbjct: 272 HI 273

Converts the inactive gibbberellin precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 5

>sp\|Q39111\|GAOX2_ARATH Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1	Back alignment and function description

>sp\|Q9XFR9\|G2OX2_ARATH Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1	Back alignment and function description

>sp\|Q9SVS8\|G3OX3_ARATH Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1	Back alignment and function description

>sp\|Q39103\|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2	Back alignment and function description

>sp\|Q39110\|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2	Back alignment and function description

>sp\|Q40062\|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3	Back alignment and function description

>sp\|Q9LSW7\|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1	Back alignment and function description

>sp\|Q9SQ80\|G2OX1_PEA Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1	Back alignment and function description

>sp\|Q05964\|FL3H_DIACA Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		236
224054180		313	2-oxoglutarate-dependent dioxygenase [Po	0.987	0.744	0.666	6e-91
255553007		321	Gibberellin 20 oxidase, putative [Ricinu	0.995	0.732	0.595	2e-82
225442749		311	PREDICTED: gibberellin 20 oxidase 1 [Vit	0.983	0.745	0.617	7e-81
147852210		311	hypothetical protein VITISV_028513 [Viti	0.983	0.745	0.617	8e-81
225442753		313	PREDICTED: gibberellin 20 oxidase 3-like	0.991	0.747	0.553	2e-74
297743339		461	unnamed protein product [Vitis vinifera]	0.991	0.507	0.553	2e-74
147800974		317	hypothetical protein VITISV_030994 [Viti	0.987	0.735	0.557	8e-73
225442757		317	PREDICTED: gibberellin 3-beta-dioxygenas	0.987	0.735	0.557	8e-73
224054172		313	2-oxoglutarate-dependent dioxygenase [Po	0.987	0.744	0.542	8e-69
255553009		314	Gibberellin 20 oxidase, putative [Ricinu	0.970	0.729	0.515	7e-68

>gi\|224054180\|ref\|XP_002298131.1\| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi\|222845389\|gb\|EEE82936.1\| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  339 bits (869), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 156/234 (66%), Positives = 197/234 (84%), Gaps = 1/234 (0%)

Query: 1   MGSLSVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFS 60
           MGSLS P+LPV++ SKEN+KPG SSWL T + V  ALEE+GCFVA+YD+V L LHN +FS
Sbjct: 1   MGSLSPPELPVIDFSKENMKPGTSSWLSTCKDVMYALEEYGCFVAVYDKVPLTLHNDLFS 60

Query: 61  AAEELFNLPIEIKEKNVSEKPYYGYLGNNPLVPAIYEGMGVDYANTIEGTQNFTNLIWPE 120
             ++LF+LPIE K KNVS+ PYYGY+GN P +P++YEGMG+D A T+EGT++F + +WP 
Sbjct: 61  TLKDLFDLPIETKRKNVSDLPYYGYVGNQPFIPSLYEGMGIDNAITLEGTEDFADTMWPG 120

Query: 121 GNENFCKTVVSYSRLVSELEQMVKRMVFESYGVDKYYDSVLESSTYLLRIMKYRCPETNE 180
           GN++FCKTV+SYS LVSELEQMV RMVFESYGV +++DS  ES+TYL R+MKYR PE NE
Sbjct: 121 GNDHFCKTVLSYSMLVSELEQMVVRMVFESYGVYQHHDSHKESTTYLFRMMKYRGPEKNE 180

Query: 181 KNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFL 234
            N+GCD HTDKSFITVLHQN+V+GLE+++KDG W+GF  P+PSSFIV+AG+A L
Sbjct: 181 ANVGCDAHTDKSFITVLHQNQVSGLEVKSKDGQWMGF-KPSPSSFIVMAGEALL 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255553007\|ref\|XP_002517546.1\| Gibberellin 20 oxidase, putative [Ricinus communis] gi\|223543178\|gb\|EEF44710.1\| Gibberellin 20 oxidase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225442749\|ref\|XP_002284974.1\| PREDICTED: gibberellin 20 oxidase 1 [Vitis vinifera] gi\|297743336\|emb\|CBI36203.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147852210\|emb\|CAN80139.1\| hypothetical protein VITISV_028513 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225442753\|ref\|XP_002284983.1\| PREDICTED: gibberellin 20 oxidase 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297743339\|emb\|CBI36206.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147800974\|emb\|CAN77851.1\| hypothetical protein VITISV_030994 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225442757\|ref\|XP_002280670.1\| PREDICTED: gibberellin 3-beta-dioxygenase 3 [Vitis vinifera] gi\|297743341\|emb\|CBI36208.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224054172\|ref\|XP_002298127.1\| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi\|222845385\|gb\|EEE82932.1\| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255553009\|ref\|XP_002517547.1\| Gibberellin 20 oxidase, putative [Ricinus communis] gi\|223543179\|gb\|EEF44711.1\| Gibberellin 20 oxidase, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		236
TAIR\|locus:2011581		314	AT1G52800 [Arabidopsis thalian	0.957	0.719	0.510	7.6e-64
TAIR\|locus:2011576		310	AT1G52790 [Arabidopsis thalian	0.961	0.732	0.471	3.2e-58
TAIR\|locus:2011506		317	AT1G52820 [Arabidopsis thalian	0.974	0.725	0.463	7.5e-57
TAIR\|locus:2139389		322	AOP1 [Arabidopsis thaliana (ta	0.927	0.680	0.435	1.7e-50
TAIR\|locus:2196618		320	AT1G15540 [Arabidopsis thalian	0.987	0.728	0.424	5.2e-49
TAIR\|locus:2034255		320	AT1G80320 [Arabidopsis thalian	0.936	0.690	0.415	4.8e-46
TAIR\|locus:2010474		322	AT1G28030 [Arabidopsis thalian	0.932	0.683	0.399	4.3e-38
TAIR\|locus:2011586		289	AT1G52810 [Arabidopsis thalian	0.796	0.650	0.411	2.1e-36
TAIR\|locus:2139370		361	AOP3 [Arabidopsis thaliana (ta	0.572	0.373	0.374	4.4e-36
TAIR\|locus:2035859		308	AT1G14130 [Arabidopsis thalian	0.915	0.701	0.306	6.7e-17

TAIR\|locus:2011581 AT1G52800 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 117/229 (51%), Positives = 173/229 (75%)

Query:     4 LSVPKLPVVNL-SKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAA 62
             L   K+P+++L S++ LKP  S+W   SR+  EALEE+GCF+A+YD V+ +L ++IF+AA
Sbjct:     5 LKTTKVPILDLTSQQELKPNTSTWRSVSREACEALEEYGCFLAVYDGVTQQLDDSIFAAA 64

Query:    63 EELFNLPIEIKEKNVSEKPYYGYLGNNPLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGN 122
             EELF+LP E K+KNV+EKPY+GY+G  P++P ++EG+GVDY    E  Q FT+L+WP+GN
Sbjct:    65 EELFDLPTETKKKNVNEKPYHGYVGQMPVIP-LHEGLGVDYVTNKEIAQRFTHLMWPQGN 123

Query:   123 ENFCKTVVSYSRLVSELEQMVKRMVFESYGVDKYYDSVLESSTYLLRIMKYRCPETNEKN 182
             + FC TV ++S  V+EL+++V RM+FE+YGV+K+Y+S + S TYLL+ +KY  P  +   
Sbjct:   124 DRFCNTVHTFSNAVAELDRLVVRMIFENYGVEKHYESHVGSKTYLLKFLKYLAPPESISM 183

Query:   183 LGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGD 231
                  HTDK+F+++LHQN+VNGLE+++KDG WI    P P S++V+AGD
Sbjct:   184 PAFPQHTDKTFLSILHQNDVNGLEVKSKDGEWISLQLP-PKSYVVMAGD 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR\|locus:2011576 AT1G52790 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2011506 AT1G52820 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139389 AOP1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2196618 AT1G15540 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2034255 AT1G80320 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2010474 AT1G28030 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2011586 AT1G52810 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139370 AOP3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035859 AT1G14130 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	2OGox4	2-oxoglutarate-dependent dioxygenase (313 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_7352000001	hypothetical protein (151 aa)	•	0.468
	FLS6	flavonol synthase (111 aa)	•	0.452
	grail3.19938000101	annotation not avaliable (120 aa)	•	0.417

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		236
PLN02365		300	PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy	1e-19
COG3491		322	COG3491, PcbC, Isopenicillin N synthase and relate	2e-19
PLN02254		358	PLN02254, PLN02254, gibberellin 3-beta-dioxygenase	4e-16
PLN03178		360	PLN03178, PLN03178, leucoanthocyanidin dioxygenase	6e-14
PLN02984		341	PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy	8e-14
PLN02758		361	PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy	6e-13
PLN02156		335	PLN02156, PLN02156, gibberellin 2-beta-dioxygenase	1e-12
PLN02485		329	PLN02485, PLN02485, oxidoreductase	1e-12
PLN02947		374	PLN02947, PLN02947, oxidoreductase	6e-12
PLN02639		337	PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy	1e-11
pfam14226		113	pfam14226, DIOX_N, non-haem dioxygenase in morphin	5e-11
pfam03171		96	pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe	9e-11
PLN02393		362	PLN02393, PLN02393, leucoanthocyanidin dioxygenase	1e-10
PLN02750		345	PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy	2e-09
PLN02704		335	PLN02704, PLN02704, flavonol synthase	2e-09
PLN02216		357	PLN02216, PLN02216, protein SRG1	3e-08
PLN02912		348	PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy	3e-08
PLN02997		325	PLN02997, PLN02997, flavonol synthase	4e-08
PLN02276		361	PLN02276, PLN02276, gibberellin 20-oxidase	3e-07
PTZ00273		320	PTZ00273, PTZ00273, oxidase reductase; Provisional	3e-06
PLN02515		358	PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di	3e-06
PLN03001		262	PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy	7e-06
PLN02403		303	PLN02403, PLN02403, aminocyclopropanecarboxylate o	6e-04
PLN03002		332	PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy	8e-04
PLN00417		348	PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy	0.003

>gnl\|CDD\|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

 Score = 85.2 bits (211), Expect = 1e-19
 Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 30/217 (13%)

Query: 28  GTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGYLG 87
           G   K+REA E +GCF  +   VSL L   +      LF+LP E+K +N       GY+ 
Sbjct: 16  GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSGYMA 75

Query: 88  NNPLVPAIYEGMGV-DYANTIEGTQNFTNLIWPEGNENFC----------KTVVSYSRLV 136
            + + P +YE +G+ D A+             P+  + FC          +T+  Y++ +
Sbjct: 76  PSEVNP-LYEALGLYDMAS-------------PQAVDTFCSQLDASPHQRETIKKYAKAI 121

Query: 137 SELEQMVKRMVFESYGVDKYYDSVLESSTYLLRIMKYR-CPETNEKNLGCDVHTDKSFIT 195
            +L   + R + ES G+ +      +      RI KY   PET     G  +HTD  F+T
Sbjct: 122 HDLAMDLARKLAESLGLVE--GDFFQGWPSQFRINKYNFTPETVGS-SGVQIHTDSGFLT 178

Query: 196 VLHQNE-VNGLEIRTKDGCWIGFDDPTPSSFIVLAGD 231
           +L  +E V GLE+           DP P + +V  GD
Sbjct: 179 ILQDDENVGGLEVMDPSSGEFVPVDPLPGTLLVNLGD 215

Length = 300

>gnl\|CDD\|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase	Back alignment and domain information

>gnl\|CDD\|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>gnl\|CDD\|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase	Back alignment and domain information

>gnl\|CDD\|215267 PLN02485, PLN02485, oxidoreductase	Back alignment and domain information

>gnl\|CDD\|215510 PLN02947, PLN02947, oxidoreductase	Back alignment and domain information

>gnl\|CDD\|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal	Back alignment and domain information

>gnl\|CDD\|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

>gnl\|CDD\|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein	Back alignment and domain information

>gnl\|CDD\|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|166345 PLN02704, PLN02704, flavonol synthase	Back alignment and domain information

>gnl\|CDD\|215129 PLN02216, PLN02216, protein SRG1	Back alignment and domain information

>gnl\|CDD\|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|178576 PLN02997, PLN02997, flavonol synthase	Back alignment and domain information

>gnl\|CDD\|215156 PLN02276, PLN02276, gibberellin 20-oxidase	Back alignment and domain information

>gnl\|CDD\|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional	Back alignment and domain information

>gnl\|CDD\|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>gnl\|CDD\|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase	Back alignment and domain information

>gnl\|CDD\|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		236
COG3491		322	PcbC Isopenicillin N synthase and related dioxygen	100.0
PTZ00273		320	oxidase reductase; Provisional	100.0
PLN02276		361	gibberellin 20-oxidase	100.0
PLN02216		357	protein SRG1	100.0
PLN02750		345	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02485		329	oxidoreductase	100.0
PLN02758		361	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02515		358	naringenin,2-oxoglutarate 3-dioxygenase	100.0
PLN02254		358	gibberellin 3-beta-dioxygenase	100.0
PLN02997		325	flavonol synthase	100.0
PLN03002		332	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN03178		360	leucoanthocyanidin dioxygenase; Provisional	100.0
PLN00417		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02393		362	leucoanthocyanidin dioxygenase like protein	100.0
PLN02912		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
KOG0143		322	consensus Iron/ascorbate family oxidoreductases [S	100.0
PLN02299		321	1-aminocyclopropane-1-carboxylate oxidase	100.0
PLN02947		374	oxidoreductase	100.0
PLN02904		357	oxidoreductase	100.0
PLN02639		337	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02156		335	gibberellin 2-beta-dioxygenase	100.0
PLN02704		335	flavonol synthase	100.0
PLN02365		300	2-oxoglutarate-dependent dioxygenase	100.0
PLN02403		303	aminocyclopropanecarboxylate oxidase	100.0
PLN02984		341	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN03001		262	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PF14226		116	DIOX_N: non-haem dioxygenase in morphine synthesis	99.93
PLN03176		120	flavanone-3-hydroxylase; Provisional	99.81
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	99.49
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	86.68
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	84.53

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.7e-58  Score=379.66  Aligned_cols=228  Identities=24%  Similarity=0.430  Sum_probs=208.0

Q ss_pred             CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC--CCC
Q 045288            5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE--KPY   82 (236)
Q Consensus         5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~--~~~   82 (236)
                      +...||+|||+.+ ..+++.+|..++++|++||+++|||||+||||+.++++++++++++||+||.|+|.++...  ...
T Consensus         2 ~~~~lp~idls~~-~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~   80 (322)
T COG3491           2 STRDLPIIDLSEL-AGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQH   80 (322)
T ss_pred             CCCcCceeccHHh-cCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccc
Confidence            4578999999997 5555668999999999999999999999999999999999999999999999999999875  358


Q ss_pred             cCccCCCC----CCCcceeeeeccCCCC--c----ccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045288           83 YGYLGNNP----LVPAIYEGMGVDYANT--I----EGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYG  152 (236)
Q Consensus        83 ~GY~~~~~----~~~d~~E~~~~~~~~~--~----~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lg  152 (236)
                      +||.+.+.    +..|++|.+.++...+  .    .+.+..++|+|| ..|++|+.+..|++.|.+++..||+++|.+|+
T Consensus        81 rGY~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~Ld  159 (322)
T COG3491          81 RGYTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIPGLRDALLQYYRAMTAVGLRLLRAIALGLD  159 (322)
T ss_pred             cccccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99998875    4459999999987654  2    233556899999 79999999999999999999999999999999


Q ss_pred             CC-hhhHHhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCc
Q 045288          153 VD-KYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGD  231 (236)
Q Consensus       153 l~-~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd  231 (236)
                      |+ ++|++.++++.+++|++|||+.+..++.-+.++|+|+|+||+|+||+++||||+++.|+|++|+| .||+++||+||
T Consensus       160 L~~d~Fd~~~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd~~~GLqv~~~~g~Wl~v~P-~pgtlvVNiGd  238 (322)
T COG3491         160 LPEDFFDKRTSDPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGWLDVPP-IPGTLVVNIGD  238 (322)
T ss_pred             CChhhhhhccCCchheEEEEecCCCcccccccccccccCCCeEEEEEecccCCeEEecCCCCeeECCC-CCCeEEEeHHH
Confidence            99 89998999999999999999998888888899999999999999999999999999899999999 99999999999


Q ss_pred             cccc
Q 045288          232 AFLV  235 (236)
Q Consensus       232 ~le~  235 (236)
                      +||.
T Consensus       239 mLe~  242 (322)
T COG3491         239 MLER  242 (322)
T ss_pred             HHHH
Confidence            9984

>PTZ00273 oxidase reductase; Provisional	Back alignment and domain information

>PLN02276 gibberellin 20-oxidase	Back alignment and domain information

>PLN02216 protein SRG1	Back alignment and domain information

>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02485 oxidoreductase	Back alignment and domain information

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>PLN02254 gibberellin 3-beta-dioxygenase	Back alignment and domain information

>PLN02997 flavonol synthase	Back alignment and domain information

>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN03178 leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02393 leucoanthocyanidin dioxygenase like protein	Back alignment and domain information

>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]	Back alignment and domain information

>PLN02299 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

>PLN02947 oxidoreductase	Back alignment and domain information

>PLN02904 oxidoreductase	Back alignment and domain information

>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02156 gibberellin 2-beta-dioxygenase	Back alignment and domain information

>PLN02704 flavonol synthase	Back alignment and domain information

>PLN02365 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>PLN02403 aminocyclopropanecarboxylate oxidase	Back alignment and domain information

>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A	Back alignment and domain information

>PLN03176 flavanone-3-hydroxylase; Provisional	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		236
1gp5_A		356	Anthocyanidin Synthase From Arabidopsis Thaliana Co		2e-05
2brt_A		355	Anthocyanidin Synthase From Arabidopsis Thaliana Co		2e-05
1gp4_A		356	Anthocyanidin Synthase From Arabidopsis Thaliana (S		1e-04

>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356

Back alignment and structure

Iteration: 1

Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%) Query: 32 KVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKP------YYGY 85 ++++A ++G + + +L + A EE F+L +E KEK +++ Y Sbjct: 69 ELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 128 Query: 86 LGNNPLVPAIYEGMGVDYANTIEGTQNFTNL-IWPEGNENFCKTVVSYSRLVSELEQMVK 144 L NN +E DY + + +L IWP+ ++ + Y++ + L V Sbjct: 129 LANNASGQLEWE----DYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 184 Query: 145 RMVFESYGV--DKYYDSV--LESSTYLLRIMKY-RCPETNEKNLGCDVHTDKSFITVLHQ 199 + + G+ D+ V LE ++I Y +CP+ E LG + HTD S +T + Sbjct: 185 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP-ELALGVEAHTDVSALTFILH 243 Query: 200 NEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAF 233 N V GL++ +G W+ P S ++ GD Sbjct: 244 NMVPGLQLFY-EGKWVTA-KCVPDSIVMHIGDTL 275

PyMOL of 1gp5

>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355

Back alignment and structure

>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		236
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	3e-27
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	4e-26
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	6e-24
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	9e-23
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	2e-22
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	2e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312	Back alignment and structure

 Score =  105 bits (263), Expect = 3e-27
 Identities = 46/239 (19%), Positives = 92/239 (38%), Gaps = 20/239 (8%)

Query: 5   SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYD-EVSLELHNAIFSAAE 63
           S   +  V+ S       A  +   ++++  + E +G F  L D ++     +A   +A+
Sbjct: 3   STSAIDPVSFS-----LYAKDFTRFAQELGASFERYG-FAVLSDYDLDQARIDAAVDSAK 56

Query: 64  ELFNLPIEIKEK-NVSEKPYYGYLG------NNPLVPAIYEG--MGVDYANTIEGTQNFT 114
             F LP+E K++    +    GY+              + E   MG D         +  
Sbjct: 57  AFFALPVETKKQYAGVKGGARGYIPFGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMA 116

Query: 115 NLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVDK-YYDSVLESSTYLLRIMKY 173
           + +WP     F   V      +  +   V   +     +++ ++   ++    +LR++ Y
Sbjct: 117 DNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHY 176

Query: 174 RCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFD-DPTPSSFIVLAGD 231
                +   +    H D + IT+L   E  GLE+  +DG W+    +P P   ++  GD
Sbjct: 177 PPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWL--PINPPPGCLVINIGD 233

PyMOL of 3oox

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319	Back alignment and structure

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311	Back alignment and structure

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		236
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	100.0
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	100.0
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	100.0
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	100.0
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	100.0
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	100.0

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}	Back alignment and structure

Probab=100.00  E-value=3e-59  Score=400.98  Aligned_cols=224  Identities=17%  Similarity=0.274  Sum_probs=198.8

Q ss_pred             CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-CCCcC
Q 045288            6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-KPYYG   84 (236)
Q Consensus         6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~G   84 (236)
                      ..+||||||+.+  .   +.+.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... ..++|
T Consensus         4 ~~~iPvIDls~~--~---~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~G   78 (312)
T 3oox_A            4 TSAIDPVSFSLY--A---KDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARG   78 (312)
T ss_dssp             CCSSCCEETHHH--H---HCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSE
T ss_pred             CCCCCeEEChHh--c---ccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccc
Confidence            568999999985  2   25778999999999999999999999999999999999999999999999999874 56789


Q ss_pred             ccCCCC------CCCcceeeeeccCCCC--cccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-h
Q 045288           85 YLGNNP------LVPAIYEGMGVDYANT--IEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-K  155 (236)
Q Consensus        85 Y~~~~~------~~~d~~E~~~~~~~~~--~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~  155 (236)
                      |.+.+.      +..|++|+|.++....  .+....+.+|.||+.+++||+.+++|++.|.+++..|+++|+++||++ +
T Consensus        79 y~~~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~  158 (312)
T 3oox_A           79 YIPFGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERD  158 (312)
T ss_dssp             EECCCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             cccccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence            987654      2469999999976432  222234567999999999999999999999999999999999999999 8


Q ss_pred             hhHHhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288          156 YYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV  235 (236)
Q Consensus       156 ~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~  235 (236)
                      +|.+.++.+.+.+|++||||++.+...+|+++|||+|+||||+||+++||||++++|+|++|+| .||++|||+||+||+
T Consensus       159 ~f~~~~~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V~p-~pg~~vVNiGD~l~~  237 (312)
T 3oox_A          159 FFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINP-PPGCLVINIGDMLER  237 (312)
T ss_dssp             TTHHHHTTCCCEEEEEEECCCSSCCC--CEEEECCCSSEEEEECCTTSCEEEECTTSCEEECCC-CSSCEEEEECHHHHH
T ss_pred             HHHHHhcCCcceeeeEecCCCCCCcCCcCccceecCceEEEEeEcCcCceEEECCCCcEEECCC-CCCeEEEEhHHHHHH
Confidence            9999998888999999999998765559999999999999999999999999999999999999 999999999999986

PyMOL of 3oox

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...	Back alignment and structure

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}	Back alignment and structure

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		236
d1gp6a_		349	b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr	1e-21
d1w9ya1		307	b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla	8e-20
d1dcsa_		311	b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S	5e-19
d1odma_		329	b.82.2.1 (A:) Isopenicillin N synthase {Emericella	1e-08

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.6 bits (221), Expect = 1e-21
 Identities = 49/238 (20%), Positives = 95/238 (39%), Gaps = 10/238 (4%)

Query: 3   SLSVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAA 62
               P++P ++L                 ++++A  ++G    +   +  +L   +  A 
Sbjct: 40  KEDGPQVPTIDLKNI-ESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAG 98

Query: 63  EELFNLPIEIKEKNVSEKP--YYGYLGNNPLVPAIYEGMGVDYANTIEGTQNFTNL-IWP 119
           EE F+L +E KEK  +++        G+     A  +    DY   +   +   +L IWP
Sbjct: 99  EEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWP 158

Query: 120 EGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVDKYYD----SVLESSTYLLRIMKYRC 175
           +   ++ +    Y++ +  L   V + +    G++          LE     ++I  Y  
Sbjct: 159 KTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPK 218

Query: 176 PETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAF 233
               E  LG + HTD S +T +  N V GL++   +G W+      P S ++  GD  
Sbjct: 219 CPQPELALGVEAHTDVSALTFILHNMVPGLQLF-YEGKWVTA-KCVPDSIVMHIGDTL 274

PyMOL of d1gp6a_

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307	Back information, alignment and structure

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311	Back information, alignment and structure

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		236
d1gp6a_		349	Anthocyanidin synthase {Mouse-ear cress (Arabidops	100.0
d1w9ya1		307	1-aminocyclopropane-1-carboxylate oxidase 1 {Petun	100.0
d1dcsa_		311	Deacetoxycephalosporin C synthase {Streptomyces cl	100.0
d1odma_		329	Isopenicillin N synthase {Emericella nidulans [Tax	100.0

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.1e-52  Score=361.66  Aligned_cols=226  Identities=19%  Similarity=0.289  Sum_probs=188.8

Q ss_pred             CCCCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCC--
Q 045288            3 SLSVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEK--   80 (236)
Q Consensus         3 ~~~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--   80 (236)
                      +.+..+||||||+.+ .++++..|++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++....  
T Consensus        40 ~~~~~~IPvIDls~l-~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~  118 (349)
T d1gp6a_          40 KEDGPQVPTIDLKNI-ESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT  118 (349)
T ss_dssp             CCCSCCCCEEECTTT-TCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGG
T ss_pred             cCCCCCcCeEEChhc-CCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhccccc
Confidence            345678999999996 45555667889999999999999999999999999999999999999999999999998653  


Q ss_pred             -CCcCccCCCC----CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-
Q 045288           81 -PYYGYLGNNP----LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-  154 (236)
Q Consensus        81 -~~~GY~~~~~----~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-  154 (236)
                       .+.||.....    ...++.+.+.......    .....|.||+..+.|++.+++|++.|.+++..|+++++++||++ 
T Consensus       119 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~n~wp~~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~  194 (349)
T d1gp6a_         119 GKIQGYGSKLANNASGQLEWEDYFFHLAYPE----EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEP  194 (349)
T ss_dssp             TBCSEEECCCCCSTTCCCCSCEEEEEEEESG----GGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             CCccccccccccccccccchhhhhccccccc----ccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCH
Confidence             2334433322    2233444432221111    12346889999999999999999999999999999999999999 


Q ss_pred             hhhHHhhc---CcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCc
Q 045288          155 KYYDSVLE---SSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGD  231 (236)
Q Consensus       155 ~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd  231 (236)
                      ++|.+.+.   ...+.+|++|||+++.+...+|+++|||+|+||||+|+.++||||+ ++|+|++|+| .+|++|||+||
T Consensus       195 ~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~GLqv~-~~g~W~~V~p-~~~a~vVNvGD  272 (349)
T d1gp6a_         195 DRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF-YEGKWVTAKC-VPDSIVMHIGD  272 (349)
T ss_dssp             THHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEECSCCCEEEE-ETTEEEECCC-CTTCEEEEECH
T ss_pred             HHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEeccCCcceeee-cCCceEEccC-CCCCeeeeHHh
Confidence            88877653   4567899999999998888999999999999999999999999995 6899999999 99999999999


Q ss_pred             cccc
Q 045288          232 AFLV  235 (236)
Q Consensus       232 ~le~  235 (236)
                      +||+
T Consensus       273 ~l~~  276 (349)
T d1gp6a_         273 TLEI  276 (349)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986

PyMOL of d1gp6a_

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}	Back information, alignment and structure

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]}	Back information, alignment and structure