Citrus Sinensis ID: 045289

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MAKSESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLARDEMEFDNEELGCYP
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHccccHHHHHHHHHHccccccEEcHHHHHHHHHHHHHHHHHHHHHccccHHccccc
Coil and Loop (DISEMBL)
maksesdsrsniqeedrylpiaNISWIIkkafpandiitKNAKQIVQGCSKACSLARDemefdneelgcyp
Flexible Loop (DISEMBL)
maksesdsrsniqeedrylpiaNISWIIKKAFPANDIITKNAKQIVQGCSKACSLARDEMefdneelgcyp
Low Complexity Region (SEG)
MAKSESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLARDEMEFDNEELGCYP
Disordered region (IsUnstruct)
****************RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA***************
Disordered Region (DISOPRED)
****************RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLARDEMEFDNEELGCY*
Disordered Region (DISEMBL)
*************EEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLARDEMEF*********
Disordered Region (DISPRO)
************QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLARDEMEFDNEELGCYP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKSESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLARDEMEFDNEELGCYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q8VYK4	173	Nuclear transcription fac	yes	no	0.549	0.225	0.589	1e-07
O23310	161	Nuclear transcription fac	no	no	0.690	0.304	0.5	1e-07
Q9SLG0	141	Nuclear transcription fac	no	no	0.676	0.340	0.541	2e-07
P25209	179	Nuclear transcription fac	N/A	no	0.535	0.212	0.631	3e-07
Q5QMG3	178	Nuclear transcription fac	no	no	0.647	0.258	0.574	3e-07
Q60EQ4	185	Nuclear transcription fac	no	no	0.535	0.205	0.631	4e-07
Q67XJ2	176	Nuclear transcription fac	no	no	0.549	0.221	0.538	2e-06
Q9FGJ3	190	Nuclear transcription fac	no	no	0.521	0.194	0.594	2e-06
Q54WV0	490	Nuclear transcription fac	yes	no	0.521	0.075	0.594	2e-05
Q9SIT9	215	Nuclear transcription fac	no	no	0.521	0.172	0.540	2e-05

>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 32/39 (82%)

Query: 11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          +++E+DR+LPIANIS I+K+  PAN  I K+AK+IVQ C
Sbjct: 27 HVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQEC 65

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 7/56 (12%)

Query: 1  MAKSESDSRSN-------IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          MA S++DS  +        +E+DR+LPIAN+S I+KKA PAN  I+K+AK+ VQ C
Sbjct: 1  MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQEC 56

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 33/48 (68%)

Query: 2  AKSESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          A    +S  +++E+DRYLPIANIS I+KKA P N  I K+AK  VQ C
Sbjct: 9  AGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQEC 56

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 31/38 (81%)

Query: 12 IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          ++E+DR+LPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQEC 66

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Zea mays (taxid: 4577)

>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 4  SESDSRSN-IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          S S  RS  ++E+DR+LPIANIS I+KKA PAN  I K+AK+ +Q C
Sbjct: 23 SGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQEC 69

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 31/38 (81%)

Query: 12 IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          ++E+DR+LPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQEC 73

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 30/39 (76%)

Query: 11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          N++E+DR+LPIANIS I+K+  P N  I K+AK+ +Q C
Sbjct: 26 NVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQEC 64

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query: 13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          +E+DR+LPIAN+S I+KKA PAN  I+K+AK+ +Q C
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQEC 62

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 28/37 (75%)

Query: 13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          +E+DRYLPIANI  I+KKA P N  + K+AK+ VQ C
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDC 83

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 28/37 (75%)

Query: 13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          +E+DR+LPIAN+  I+KK  P N  I+K+AK+ VQ C
Sbjct: 35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQEC 71

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
356572409	171	PREDICTED: nuclear transcription factor	0.647	0.269	0.630	2e-08
356572407	159	PREDICTED: nuclear transcription factor	0.647	0.289	0.630	3e-08
356505184	171	PREDICTED: nuclear transcription factor	0.577	0.239	0.682	4e-08
357510573	171	Nuclear transcription factor Y subunit B	0.647	0.269	0.630	4e-08
449440059	173	PREDICTED: nuclear transcription factor	0.647	0.265	0.608	5e-08
449524192	121	PREDICTED: nuclear transcription factor	0.647	0.380	0.608	1e-07
357505639	474	Nuclear transcription factor Y subunit B	0.633	0.094	0.644	1e-07
255568424	180	ccaat-binding transcription factor subun	0.591	0.233	0.666	1e-07
297746192	133	unnamed protein product [Vitis vinifera]	0.577	0.308	0.658	2e-07
225435189	135	PREDICTED: nuclear transcription factor	0.577	0.303	0.658	2e-07

>gi|356572409|ref|XP_003554361.1| PREDICTED: nuclear transcription factor Y subunit B-8-like isoform 2 [Glycine max]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 4  SESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
           E   RSN++E+DRYLPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 16 GEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 61

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572407|ref|XP_003554360.1| PREDICTED: nuclear transcription factor Y subunit B-8-like isoform 1 [Glycine max]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 4  SESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
           E   RSN++E+DRYLPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 16 GEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 61

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505184|ref|XP_003521372.1| PREDICTED: nuclear transcription factor Y subunit B-8-like [Glycine max]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 9  RSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          RSN++E+DRYLPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 21 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 61

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510573|ref|XP_003625575.1| Nuclear transcription factor Y subunit B-3 [Medicago truncatula] gi|355500590|gb|AES81793.1| Nuclear transcription factor Y subunit B-3 [Medicago truncatula] gi|388523199|gb|AFK49652.1| nuclear transcription factor Y subunit B2 [Medicago truncatula]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 4  SESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
           E   RSNI+E+DR+LPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 16 GEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQEC 61

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440059|ref|XP_004137802.1| PREDICTED: nuclear transcription factor Y subunit B-8-like [Cucumis sativus]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 4  SESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
           E   RSN++E+DR+LPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 16 GEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQEC 61

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524192|ref|XP_004169107.1| PREDICTED: nuclear transcription factor Y subunit B-8-like, partial [Cucumis sativus]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 4  SESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
           E   RSN++E+DR+LPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 16 GEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQEC 61

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505639|ref|XP_003623108.1| Nuclear transcription factor Y subunit B-3, partial [Medicago truncatula] gi|355498123|gb|AES79326.1| Nuclear transcription factor Y subunit B-3, partial [Medicago truncatula]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/45 (64%), Positives = 35/45 (77%)

Query: 5  ESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          E   RSNI+E+DR+LPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 17 EHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQEC 61

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568424|ref|XP_002525186.1| ccaat-binding transcription factor subunit A, putative [Ricinus communis] gi|223535483|gb|EEF37152.1| ccaat-binding transcription factor subunit A, putative [Ricinus communis]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 8  SRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          S SN++E+DRYLPIANIS I+KKA PAN  I K+AK+ VQ C
Sbjct: 28 SNSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 69

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746192|emb|CBI16248.3| unnamed protein product [Vitis vinifera]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 9  RSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          RSN++E+DRYLPIANIS I+KKA PAN  I K+AK+ +Q C
Sbjct: 22 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETLQEC 62

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435189|ref|XP_002284842.1| PREDICTED: nuclear transcription factor Y subunit B-8-like [Vitis vinifera]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 9  RSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          RSN++E+DRYLPIANIS I+KKA PAN  I K+AK+ +Q C
Sbjct: 22 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETLQEC 62

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
TAIR|locus:2061789	173	NF-YB8 ""nuclear factor Y, sub	0.774	0.317	0.482	5.3e-08
TAIR|locus:2129885	161	NF-YB3 ""nuclear factor Y, sub	0.690	0.304	0.5	5.3e-08
TAIR|locus:2083941	176	NF-YB10 ""nuclear factor Y, su	0.774	0.312	0.446	3.8e-07
TAIR|locus:2168983	190	NF-YB2 ""nuclear factor Y, sub	0.521	0.194	0.594	3.8e-07
TAIR|locus:2054095	215	NF-YB7 ""nuclear factor Y, sub	0.661	0.218	0.458	6.4e-07
ZFIN|ZDB-GENE-050306-25	205	nfybb "nuclear transcription f	0.591	0.204	0.5	2.7e-06
UNIPROTKB|E1C5G6	152	NFYB "Nuclear transcription fa	0.591	0.276	0.476	9e-06
UNIPROTKB|F8VSL3	131	NFYB "Nuclear transcription fa	0.591	0.320	0.476	9e-06
DICTYBASE|DDB_G0279419	490	nfyB "putative histone-like tr	0.647	0.093	0.478	1e-05
UNIPROTKB|P25207	205	NFYB "Nuclear transcription fa	0.591	0.204	0.476	1.8e-05

TAIR|locus:2061789 NF-YB8 ""nuclear factor Y, subunit B8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 27/56 (48%), Positives = 38/56 (67%)

Query:     5 ESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC-SKACSLARDE 59
             +S    +++E+DR+LPIANIS I+K+  PAN  I K+AK+IVQ C S+  S    E
Sbjct:    21 QSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSE 76

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2129885 NF-YB3 ""nuclear factor Y, subunit B3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 28/56 (50%), Positives = 40/56 (71%)

Query:     1 MAKSESDS-------RSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
             MA S++DS        ++ +E+DR+LPIAN+S I+KKA PAN  I+K+AK+ VQ C
Sbjct:     1 MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQEC 56

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2083941 NF-YB10 ""nuclear factor Y, subunit B10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query:     5 ESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC-SKACSLARDE 59
             +S    N++E+DR+LPIANIS I+K+  P N  I K+AK+ +Q C S+  S    E
Sbjct:    20 QSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSE 75

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2168983 NF-YB2 ""nuclear factor Y, subunit B2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 22/37 (59%), Positives = 31/37 (83%)

Query:    13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
             +E+DR+LPIAN+S I+KKA PAN  I+K+AK+ +Q C
Sbjct:    26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQEC 62

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2054095 NF-YB7 ""nuclear factor Y, subunit B7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 22/48 (45%), Positives = 36/48 (75%)

Query:     2 AKSESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
             +K+ +++ +N +E+DR+LPIAN+  I+KK  P N  I+K+AK+ VQ C
Sbjct:    25 SKTNNNNNNN-KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQEC 71

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

ZFIN|ZDB-GENE-050306-25 nfybb "nuclear transcription factor Y, beta b" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 21/42 (50%), Positives = 30/42 (71%)

Query:     8 SRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
             S+ N++E+D YLPIAN++ I+K A P    I K+AK+ VQ C
Sbjct:    47 SKDNLREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQEC 88

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E1C5G6 NFYB "Nuclear transcription factor Y subunit beta" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query:     8 SRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
             S+ + +E+D YLPIAN++ I+K A P    I K+AK+ VQ C
Sbjct:    46 SKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQEC 87

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0016602 "CCAAT-binding factor complex" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0070491 "repressing transcription factor binding" evidence=IEA

UNIPROTKB|F8VSL3 NFYB "Nuclear transcription factor Y subunit beta" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query:     8 SRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
             S+ + +E+D YLPIAN++ I+K A P    I K+AK+ VQ C
Sbjct:    49 SKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQEC 90

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

DICTYBASE|DDB_G0279419 nfyB "putative histone-like transcription factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 112 (44.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query:     4 SESDSRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
             + +++    +E+DRYLPIANI  I+KKA P N  + K+AK+ VQ C
Sbjct:    38 ANNNNNEGDREQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDC 83

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P25207 NFYB "Nuclear transcription factor Y subunit beta" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query:     8 SRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
             S+ + +E+D YLPIAN++ I+K A P    I K+AK+ VQ C
Sbjct:    46 SKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQEC 87

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0016602 "CCAAT-binding factor complex" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0070491 "repressing transcription factor binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024463001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (133 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG0869	168	consensus CCAAT-binding factor, subunit A (HAP3) [	99.92
KOG0871	156	consensus Class 2 transcription repressor NC2, bet	99.42
COG5150	148	Class 2 transcription repressor NC2, beta subunit	98.98
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	98.87
KOG0870	172	consensus DNA polymerase epsilon, subunit D [Trans	98.76
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	98.73
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	93.94
PF09415	72	CENP-X: CENP-S associating Centromere protein X; I	93.39
smart00428	105	H3 Histone H3.	93.06
PF03847	68	TFIID_20kDa: Transcription initiation factor TFIID	91.05
smart00803	65	TAF TATA box binding protein associated factor. TA	90.21
cd00076	85	H4 Histone H4, one of the four histones, along wit	90.17
PLN00035	103	histone H4; Provisional	89.06
smart00417	74	H4 Histone H4.	85.8
PLN00121	136	histone H3; Provisional	84.68
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	84.45
PF00356	46	LacI: Bacterial regulatory proteins, lacI family;	84.36
PTZ00015	102	histone H4; Provisional	83.25
PLN00161	135	histone H3; Provisional	83.12
COG5208	286	HAP5 CCAAT-binding factor, subunit C [Transcriptio	81.38

>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]

Probab=99.92  E-value=4.2e-26  Score=162.69  Aligned_cols=47  Identities=49%  Similarity=0.735  Sum_probs=45.1

Q ss_pred             CCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           10 SNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        10 ~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ..+|+|||+||||||+||||++||+++||||||||+|||||||||-|
T Consensus        24 ~~~reqDr~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISF   70 (168)
T KOG0869|consen   24 LSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF   70 (168)
T ss_pred             cccchhhhhccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHH
Confidence            35999999999999999999999999999999999999999999976

>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]

Probab=99.42  E-value=2.5e-13  Score=96.42  Aligned_cols=45  Identities=20%  Similarity=0.406  Sum_probs=42.1

Q ss_pred             CccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhhc
Q 045289           13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLAR   57 (71)
Q Consensus        13 reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~~   57 (71)
                      ..+|..||.|+|.+|||+.||.++.|+|||||++++||+|||+.-
T Consensus         7 ~dde~sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI~li   51 (156)
T KOG0871|consen    7 EDDELSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLI   51 (156)
T ss_pred             ccccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999999999863

>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]

Probab=98.98  E-value=8.7e-10  Score=77.71  Aligned_cols=46  Identities=17%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             CCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhhc
Q 045289           12 IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLAR   57 (71)
Q Consensus        12 ~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~~   57 (71)
                      ..++..+||+|||.|++...||.+.-++||||++++.||.|||+.-
T Consensus         5 ~~dDe~sLPKATVqKMvS~iLp~dl~ftKearei~in~cieFi~~l   50 (148)
T COG5150           5 KNDDENSLPKATVQKMVSSILPKDLVFTKEAREIFINACIEFINML   50 (148)
T ss_pred             cccccccCcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH
Confidence            4457789999999999999999999999999999999999999864

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=98.87  E-value=4e-09  Score=62.43  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=34.1

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      .||++.|.||||.. |...+||+||.++|+.|+.+||..
T Consensus         2 ~lP~a~vkri~k~~-~~~~~vs~ea~~~i~~a~e~Fi~~   39 (65)
T PF00808_consen    2 SLPLARVKRIMKSD-PDVMRVSKEAVEAIAKAAEEFIQY   39 (65)
T ss_dssp             SS-HHHHHHHHHHT-STTSEE-HHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHhccC-CCccchhHHHHHHHHHHHHHHHHH
Confidence            69999999999999 999999999999999999999964

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]

Probab=98.76  E-value=7.2e-09  Score=74.73  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=42.3

Q ss_pred             CCccccccchHHHHHHHHhhCCCC-CcccHhHHHHHHHHHHHHHhh
Q 045289           12 IQEEDRYLPIANISWIIKKAFPAN-DIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        12 ~reqD~~LPiAnI~RIMK~aLP~~-aKISKeAKe~iqeCvsEFIl~   56 (71)
                      -|.+|+.||.|.|+|++|++||.. +.|+|||+.+|++.++-||++
T Consensus         4 eri~dl~lP~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~   49 (172)
T KOG0870|consen    4 ERIEDLNLPNAIITRLVKEVLPESNVSISKEARLAIARAATVFVIF   49 (172)
T ss_pred             hhHHHhhccHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHH
Confidence            466899999999999999999988 999999999999999999975

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=98.73  E-value=6.4e-09  Score=67.97  Aligned_cols=45  Identities=20%  Similarity=0.176  Sum_probs=41.1

Q ss_pred             CCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           10 SNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        10 ~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ...+..|+.||+|+|.||||++.+.  +||.+|++++|+|+.||+..
T Consensus        11 ~~~~~~~~~Lp~apv~Ri~r~~~~~--Rvs~~A~~~l~~~~e~~~~~   55 (91)
T COG2036          11 RYQRSTDLLLPKAPVRRILRKAGAE--RVSSSAIEELQEALEEYLEE   55 (91)
T ss_pred             hhhhhhhhhcCchHHHHHHHHHhHH--HhhHHHHHHHHHHHHHHHHH
Confidence            3457789999999999999999998  99999999999999999853

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=93.94  E-value=0.16  Score=30.99  Aligned_cols=36  Identities=8%  Similarity=0.171  Sum_probs=32.1

Q ss_pred             cchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           19 LPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        19 LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      |+.-++..++++.=| +..++.+|++.+|+.+.+|+.
T Consensus         2 ~~k~~l~~lv~~id~-~~~~~~da~~~l~~~~e~fv~   37 (72)
T cd07981           2 LTKRKLQELLKEIDP-REQLDPDVEELLLEIADDFVD   37 (72)
T ss_pred             CcHHHHHHHHHhhCC-CCCcCHHHHHHHHHHHHHHHH
Confidence            567788999999877 589999999999999999985

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex

Probab=93.39  E-value=0.063  Score=33.50  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=28.6

Q ss_pred             chHHHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHHh
Q 045289           20 PIANISWIIKKAFP-ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        20 PiAnI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      |..+|.||++...- +..||+++|-.++++...-||.
T Consensus         1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~   37 (72)
T PF09415_consen    1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVR   37 (72)
T ss_dssp             -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence            78899999998774 6789999999999998887774

The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.

>smart00428 H3 Histone H3

Probab=93.06  E-value=0.11  Score=34.64  Aligned_cols=43  Identities=12%  Similarity=0.122  Sum_probs=37.0

Q ss_pred             CccccccchHHHHHHHHhhCCC-----CCcccHhHHHHHHHHHHHHHh
Q 045289           13 QEEDRYLPIANISWIIKKAFPA-----NDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        13 reqD~~LPiAnI~RIMK~aLP~-----~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +..|+.+|++..+|++++....     +.+++.+|.+++|+++-.|+.
T Consensus        24 kst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv   71 (105)
T smart00428       24 KSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLV   71 (105)
T ss_pred             cCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHH
Confidence            4568889999999999888753     679999999999999988876

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=91.05  E-value=0.46  Score=29.26  Aligned_cols=33  Identities=6%  Similarity=0.128  Sum_probs=24.0

Q ss_pred             HHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           22 ANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        22 AnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      -++.-+++++= |+.++.+++.+++.+.+.+||-
T Consensus         3 ~~l~~Lv~~iD-p~~~ld~~vee~Ll~laddFv~   35 (68)
T PF03847_consen    3 RKLQELVKQID-PNEKLDPDVEELLLELADDFVD   35 (68)
T ss_dssp             HHHHHHHHCC--SS----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHHHH
Confidence            46777888875 5799999999999999999984

; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.

>smart00803 TAF TATA box binding protein associated factor

Probab=90.21  E-value=0.87  Score=27.57  Aligned_cols=36  Identities=11%  Similarity=0.112  Sum_probs=29.0

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +||.++|.||.+..  +--.||+|+.+.+.+-+..|+.
T Consensus         2 ~~p~~~i~ria~~~--Gi~ris~~a~~~l~~~~e~rl~   37 (65)
T smart00803        2 WLPKETIKDVAESL--GIGNLSDEAAKLLAEDVEYRIK   37 (65)
T ss_pred             CCCHHHHHHHHHHC--CCccccHHHHHHHHHHHHHHHH
Confidence            69999999998875  2235999999988888877763

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=90.17  E-value=0.65  Score=29.89  Aligned_cols=36  Identities=11%  Similarity=0.009  Sum_probs=31.1

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      .||++.|.||.++.=  --+||+++.+-+.++..+|+.
T Consensus        13 gi~k~~I~RLarr~G--vkRIS~d~y~e~~~~l~~~l~   48 (85)
T cd00076          13 GITKPAIRRLARRGG--VKRISGGVYDEVRNVLKSYLE   48 (85)
T ss_pred             cCCHHHHHHHHHHcC--cchhhHHHHHHHHHHHHHHHH
Confidence            499999999999872  446999999999999998874

>PLN00035 histone H4; Provisional

Probab=89.06  E-value=0.88  Score=30.47  Aligned_cols=38  Identities=11%  Similarity=-0.037  Sum_probs=32.1

Q ss_pred             ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      -..||++.|.||.+++=  --+||.++.+.+.+...+|+.
T Consensus        27 i~~ipk~~IrRLARr~G--vkRIS~~ay~elr~vle~~l~   64 (103)
T PLN00035         27 IQGITKPAIRRLARRGG--VKRISGLIYEETRGVLKIFLE   64 (103)
T ss_pred             hccCCHHHHHHHHHHcC--cccchHHHHHHHHHHHHHHHH
Confidence            45599999999999873  457999999999999888874

>smart00417 H4 Histone H4

Probab=85.80  E-value=2  Score=27.11  Aligned_cols=37  Identities=8%  Similarity=0.002  Sum_probs=30.5

Q ss_pred             cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      ..||++.|.||.+++  .--+||.++.+-+.+...+|+.
T Consensus        12 ~gI~k~~IrRLaRr~--GvkRIS~~~y~elr~vle~~l~   48 (74)
T smart00417       12 QGITKPAIRRLARRG--GVKRISGLIYDETRNVLKSFLE   48 (74)
T ss_pred             cCCCHHHHHHHHHHc--CcchhhHHHHHHHHHHHHHHHH
Confidence            469999999999987  2336999999988888888864

>PLN00121 histone H3; Provisional

Probab=84.68  E-value=0.94  Score=31.65  Aligned_cols=44  Identities=7%  Similarity=0.080  Sum_probs=37.0

Q ss_pred             CccccccchHHHHHHHHhhCCC---CCcccHhHHHHHHHHHHHHHhh
Q 045289           13 QEEDRYLPIANISWIIKKAFPA---NDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        13 reqD~~LPiAnI~RIMK~aLP~---~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      +..|+.+|.+-.+|+++++...   +..+..+|-+++||++--|+.-
T Consensus        57 kst~lLI~k~pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~  103 (136)
T PLN00121         57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVG  103 (136)
T ss_pred             cccccccccccHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHH
Confidence            3458889999999999988754   6899999999999999888753

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=84.45  E-value=1.8  Score=25.38  Aligned_cols=39  Identities=15%  Similarity=0.108  Sum_probs=30.5

Q ss_pred             ccccchHHHHHHHHhhCCC---CCcccHhHHHHHHHHHHHHH
Q 045289           16 DRYLPIANISWIIKKAFPA---NDIITKNAKQIVQGCSKACS   54 (71)
Q Consensus        16 D~~LPiAnI~RIMK~aLP~---~aKISKeAKe~iqeCvsEFI   54 (71)
                      ++..|..-|.|+.|+..+.   ..+||++|-+++|..+-.|+
T Consensus         3 ~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~   44 (75)
T PF00125_consen    3 RRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLL   44 (75)
T ss_dssp             SHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHH
T ss_pred             ccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhh
Confidence            3567888888888888764   25999999999998766554

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=84.36  E-value=2.5  Score=24.06  Aligned_cols=32  Identities=3%  Similarity=0.164  Sum_probs=26.9

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC   53 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF   53 (71)
                      .+.+++|+|++...    ..||.+.++-|++.+.|.
T Consensus        10 gvS~~TVSr~ln~~----~~vs~~tr~rI~~~a~~l   41 (46)
T PF00356_consen   10 GVSKSTVSRVLNGP----PRVSEETRERILEAAEEL   41 (46)
T ss_dssp             TSSHHHHHHHHTTC----SSSTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHhCC----CCCCHHHHHHHHHHHHHH
Confidence            46789999998876    589999999999988763

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....

>PTZ00015 histone H4; Provisional

Probab=83.25  E-value=2.6  Score=28.12  Aligned_cols=40  Identities=18%  Similarity=0.169  Sum_probs=32.7

Q ss_pred             ccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           14 EEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        14 eqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +.-..||++.|.||.+++  .--+||.++.+-+.+...+|+.
T Consensus        26 ~~i~gI~k~~IrRLarr~--GvkRIS~d~y~e~r~vle~~l~   65 (102)
T PTZ00015         26 DNIRGITKGAIRRLARRG--GVKRISGDIYEEVRGVLKAFLE   65 (102)
T ss_pred             hcccCCCHHHHHHHHHHc--CCccchHHHHHHHHHHHHHHHH
Confidence            344569999999999987  2346999999999999888874

>PLN00161 histone H3; Provisional

Probab=83.12  E-value=2.2  Score=29.90  Aligned_cols=43  Identities=7%  Similarity=0.021  Sum_probs=36.3

Q ss_pred             CccccccchHHHHHHHHhhC----CCCCcccHhHHHHHHHHHHHHHh
Q 045289           13 QEEDRYLPIANISWIIKKAF----PANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        13 reqD~~LPiAnI~RIMK~aL----P~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +..|+.+|.+-.+|+++++.    +.+.++..+|-+++||++--|+.
T Consensus        50 kst~lLIpklPF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV   96 (135)
T PLN00161         50 KSTELLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLV   96 (135)
T ss_pred             cccccccccccHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHH
Confidence            44578889999999988875    34689999999999999988886

>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]

Probab=81.38  E-value=1.5  Score=33.90  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=30.9

Q ss_pred             cccccchHHHHHHHHhhCCCCCc-ccHhHHHHHHHHHHHHHh
Q 045289           15 EDRYLPIANISWIIKKAFPANDI-ITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        15 qD~~LPiAnI~RIMK~aLP~~aK-ISKeAKe~iqeCvsEFIl   55 (71)
                      .|.+||.|-|-|+||--  .++| ||.||--+....+--||.
T Consensus       106 k~h~LPlARIkkvMKtd--edVkMisaEaPvlFak~~EiFI~  145 (286)
T COG5208         106 KDHNLPLARIKKVMKTD--EDVKMISAEAPVLFAKITEIFIE  145 (286)
T ss_pred             HhccCcHHHHHHHHhcc--cchhheecccchHHHHHHHHHHH
Confidence            46789999999999953  4565 888888888777777774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	71
4g91_B	92	Ccaat-Binding Complex From Aspergillus Nidulans Len		4e-05
1n1j_A	93	Crystal Structure Of The Nf-YbNF-Yc Histone Pair Le		9e-05
4awl_B	94	The Nf-y Transcription Factor Is Structurally And F		9e-05

>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans Length = 92

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 12 IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          ++E+DR+LPIAN++ I+K A P N  I K AK+ +Q C
Sbjct: 1  MKEQDRWLPIANVARIMKLALPENAKIAKEAKECMQEC 38

>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair Length = 93

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          + +E+D YLPIAN++ I+K A P    I K+AK+ VQ C
Sbjct: 1  SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQEC 39

>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 94

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          + +E+D YLPIAN++ I+K A P    I K+AK+ VQ C
Sbjct: 2  SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQEC 40
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	3e-07
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	2e-06
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	7e-05

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Length = 93

 Score = 42.5 bits (100), Expect = 3e-07
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSK 51
          + +E+D YLPIAN++ I+K A P    I K+AK+ VQ C  
Sbjct: 1  SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVS 41

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B Length = 128

 Score = 41.1 bits (96), Expect = 2e-06
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 14 EEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSK 51
           ED  LP A I  +IK+A P +  ++K A+  +   + 
Sbjct: 5  IEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAAS 42

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Length = 179

 Score = 37.5 bits (86), Expect = 7e-05
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 8  SRSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSK 51
          + S+  ++D  +P A I+ +IK+  P N  +  +A+++V  C  
Sbjct: 5  ASSSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCT 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	99.6
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	99.52
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	99.49
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	99.47
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	98.94
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	98.92
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	98.9
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	98.47
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	98.45
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	98.44
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	98.37
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	98.27
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	98.26
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	98.22
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	97.94
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	97.8
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	96.1
3b0b_C	81	CENP-X, centromere protein X; histone fold, DNA bi	95.62
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	95.57
3v9r_B	88	MHF2, uncharacterized protein YDL160C-A; histone f	95.38
4dra_E	84	Centromere protein X; DNA binding complex, DNA dam	95.3
1h3o_B	76	Transcription initiation factor TFIID 20/15 kDa su	94.43
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	93.33
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	92.94
3r45_A	156	Histone H3-like centromeric protein A; histone fol	92.4
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	91.57
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	90.99
1bh9_B	89	TAFII28; histone fold, tata binding protein, trans	84.36
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	80.4

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=99.60  E-value=7.8e-16  Score=108.98  Aligned_cols=45  Identities=24%  Similarity=0.437  Sum_probs=40.0

Q ss_pred             CCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        11 ~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ...++|+.||+|||.||||++|| +.+|||||+++|++||+|||+.
T Consensus         8 ~~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~   52 (179)
T 1jfi_B            8 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHL   52 (179)
T ss_dssp             ----CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHH
Confidence            35669999999999999999999 9999999999999999999985

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=99.52  E-value=1.2e-14  Score=91.27  Aligned_cols=45  Identities=42%  Similarity=0.646  Sum_probs=38.7

Q ss_pred             CCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           12 IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        12 ~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ++++|+.||+|+|.||||+.+|++.+||+||++++|+|+.+||..
T Consensus         2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~   46 (93)
T 1n1j_A            2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISF   46 (93)
T ss_dssp             -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999863

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=99.49  E-value=1.4e-14  Score=96.84  Aligned_cols=44  Identities=27%  Similarity=0.415  Sum_probs=36.1

Q ss_pred             CccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        13 reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      +.+|+.||+|+|.||||+++|.+.+||+||+.+|++|+++||+.
T Consensus         4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~   47 (128)
T 2byk_B            4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIF   47 (128)
T ss_dssp             -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999974

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=99.47  E-value=3.9e-14  Score=86.67  Aligned_cols=40  Identities=23%  Similarity=0.170  Sum_probs=36.4

Q ss_pred             ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      .+.||+|+|.||||+++| +.+||+||+++|++|++|||+.
T Consensus         2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~   41 (76)
T 3b0c_W            2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHR   41 (76)
T ss_dssp             --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHH
T ss_pred             CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHH
Confidence            478999999999999999 7999999999999999999974

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=98.94  E-value=7.7e-10  Score=76.48  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=36.3

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      .||+|+|.||||++||. .+||+||++.+++|++||+..
T Consensus         4 ~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~   41 (154)
T 1f1e_A            4 ELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEY   41 (154)
T ss_dssp             CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHH
Confidence            69999999999999997 999999999999999999974

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=98.92  E-value=1.4e-09  Score=64.37  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=34.4

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      .||+|+|.||||+.  ++.+||++|++++|+|+.+||..
T Consensus         2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~   38 (68)
T 1b67_A            2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEE   38 (68)
T ss_dssp             CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHH
Confidence            59999999999999  67999999999999999999963

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=98.90  E-value=2.2e-09  Score=74.15  Aligned_cols=46  Identities=11%  Similarity=0.082  Sum_probs=41.1

Q ss_pred             CCCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289            9 RSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus         9 ~~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ++....+|+.||+|+|.||||++  ...+||++|++.+++|+++|+..
T Consensus        73 ~~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~  118 (154)
T 1f1e_A           73 EGVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEE  118 (154)
T ss_dssp             TTSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHH
Confidence            34556688999999999999999  67899999999999999999864

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=98.47  E-value=2.3e-07  Score=60.90  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=37.1

Q ss_pred             cccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           15 EDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        15 qD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      .+..||+|.|.||||.. |...+||++|..+++.|+.+||..
T Consensus        38 k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~   78 (119)
T 4g92_C           38 KIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITE   78 (119)
T ss_dssp             SCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHH
Confidence            46779999999999865 999999999999999999999864

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=98.45  E-value=1.3e-07  Score=61.73  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             ccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           14 EEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        14 eqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      .+|++||+++|.||||+.  ...+||+++++.+++|+.+|+.
T Consensus         3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~   42 (111)
T 3b0c_T            3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFK   42 (111)
T ss_dssp             -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHH
Confidence            479999999999999999  6789999999999999999975

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=98.44  E-value=7.7e-08  Score=65.23  Aligned_cols=44  Identities=16%  Similarity=0.354  Sum_probs=26.2

Q ss_pred             CCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           12 IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        12 ~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ....++.||+|.|.||||.. |...+||++|..+|+.|+..||..
T Consensus        13 ~~~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~   56 (140)
T 2byk_A           13 PPTAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRH   56 (140)
T ss_dssp             ----------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHH
Confidence            34578999999999999998 888999999999999999999974

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=98.37  E-value=3.9e-07  Score=57.66  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=34.7

Q ss_pred             CccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        13 reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ...++.||+|.|.||||.. |...+||++|..++..|+..||..
T Consensus        14 ~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~   56 (97)
T 1n1j_B           14 DFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITE   56 (97)
T ss_dssp             ------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHH
Confidence            4467889999999999998 777899999999999999999963

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=98.27  E-value=1.1e-06  Score=52.34  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      .||+++|.||+|+.  +..+||++|.+.+|+|+.+|+.
T Consensus         6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~   41 (70)
T 1ku5_A            6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAI   41 (70)
T ss_dssp             CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHH
Confidence            69999999999997  5689999999999999999985

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=98.26  E-value=1.1e-06  Score=54.43  Aligned_cols=43  Identities=9%  Similarity=0.022  Sum_probs=38.8

Q ss_pred             CCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        11 ~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      .++++...||+++|.||+++.-.  .+||++|.+.+++|+.+|+.
T Consensus         3 ~~r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~   45 (84)
T 2hue_C            3 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLE   45 (84)
T ss_dssp             CGGGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHH
Confidence            46788899999999999999853  68999999999999999985

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=98.22  E-value=1.3e-06  Score=56.19  Aligned_cols=44  Identities=9%  Similarity=0.005  Sum_probs=37.0

Q ss_pred             CCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           10 SNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        10 ~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      ..++++.+.||+++|.||+++.-+  .+||++|.+.+++|+.+|+.
T Consensus        20 k~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~   63 (102)
T 1id3_B           20 KILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLE   63 (102)
T ss_dssp             ----CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHH
Confidence            456888999999999999999853  68999999999999999985

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=97.94  E-value=1.3e-05  Score=51.12  Aligned_cols=44  Identities=9%  Similarity=0.022  Sum_probs=39.7

Q ss_pred             CCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           10 SNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        10 ~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      ...+++++.||+++|.||+++.-.  .+||++|.+.+++|+.+|+.
T Consensus        21 k~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~   64 (103)
T 1tzy_D           21 KVLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLE   64 (103)
T ss_dssp             CCCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHH
Confidence            347889999999999999999865  58999999999999999985

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=97.80  E-value=2e-05  Score=50.36  Aligned_cols=44  Identities=9%  Similarity=0.000  Sum_probs=32.6

Q ss_pred             CCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           10 SNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        10 ~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      ...+++++.||+++|.||+++.-.  .+||++|.+.+++|+.+|+.
T Consensus        21 ~~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~   64 (103)
T 2yfw_B           21 KILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLE   64 (103)
T ss_dssp             ---------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHH
Confidence            345888999999999999999865  58999999999999999985

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=96.10  E-value=0.0084  Score=37.74  Aligned_cols=40  Identities=13%  Similarity=0.050  Sum_probs=34.0

Q ss_pred             cccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           15 EDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        15 qD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      -...||++-|.||||. -|...+||.+|.-++..++.-|+.
T Consensus         8 ~~~~fPvaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~   47 (98)
T 1jfi_A            8 YNARFPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLE   47 (98)
T ss_dssp             --CCCCHHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHH
T ss_pred             cCCCCChHHHHHHHHc-CccccccchHHHHHHHHHHHHHHH
Confidence            4578999999999996 566679999999999999988875

>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D

Probab=95.62  E-value=0.022  Score=35.55  Aligned_cols=42  Identities=10%  Similarity=0.124  Sum_probs=34.3

Q ss_pred             ccccccchHHHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHHh
Q 045289           14 EEDRYLPIANISWIIKKAFP-ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        14 eqD~~LPiAnI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +++-.+|...|+||++.... ...||+++|-.++++..--||.
T Consensus         4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~   46 (81)
T 3b0b_C            4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVR   46 (81)
T ss_dssp             ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHH
Confidence            45678999999999999997 5789999999998888777763

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=95.57  E-value=0.024  Score=35.14  Aligned_cols=40  Identities=10%  Similarity=0.058  Sum_probs=34.4

Q ss_pred             ccccchHHHHHHHHhhCC---CCCcccHhHHHHHHHHHHHHHh
Q 045289           16 DRYLPIANISWIIKKAFP---ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        16 D~~LPiAnI~RIMK~aLP---~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      |+.+|++-.+|++|++..   .+.+++.+|..++||.+-.|+.
T Consensus         1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv   43 (77)
T 2hue_B            1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV   43 (77)
T ss_dssp             -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHH
T ss_pred             CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHH
Confidence            578999999999999943   5789999999999999888764

>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.013  Score=37.75  Aligned_cols=37  Identities=11%  Similarity=0.010  Sum_probs=33.0

Q ss_pred             cchHHHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHHh
Q 045289           19 LPIANISWIIKKAFP-ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        19 LPiAnI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +|..+|+||++...- ++.+||+||-.++++..--||-
T Consensus         2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVr   39 (88)
T 3v9r_B            2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFID   39 (88)
T ss_dssp             CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHH
Confidence            799999999997775 5789999999999999988874

>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J

Probab=95.30  E-value=0.03  Score=35.32  Aligned_cols=42  Identities=12%  Similarity=0.109  Sum_probs=34.5

Q ss_pred             ccccccchHHHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHHh
Q 045289           14 EEDRYLPIANISWIIKKAFP-ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        14 eqD~~LPiAnI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      ..+..+|..+|+||++...- +..|||+||-.++++..--||.
T Consensus         8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~   50 (84)
T 4dra_E            8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVV   50 (84)
T ss_dssp             ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHH
Confidence            34678999999999998886 6899999999999988877764

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3

Probab=94.43  E-value=0.083  Score=32.62  Aligned_cols=38  Identities=8%  Similarity=0.184  Sum_probs=34.1

Q ss_pred             cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +-|++.++.-+++++=| +..+.+++.+++.+.+.+||-
T Consensus         4 ~vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~   41 (76)
T 1h3o_B            4 MVLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIE   41 (76)
T ss_dssp             CSSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHH
Confidence            45899999999999855 799999999999999999984

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=93.33  E-value=0.068  Score=34.40  Aligned_cols=43  Identities=14%  Similarity=0.063  Sum_probs=31.8

Q ss_pred             CccccccchHHHHHHHHhhCC------CCCcccHhHHHHHHHHHHHHHh
Q 045289           13 QEEDRYLPIANISWIIKKAFP------ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        13 reqD~~LPiAnI~RIMK~aLP------~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +..++.+|++-.+|+++++..      .+..++.+|..++||.+-.|+.
T Consensus        22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv   70 (100)
T 2yfv_A           22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLV   70 (100)
T ss_dssp             ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHH
Confidence            456899999999999999983      2678999999999999888764

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=92.94  E-value=0.11  Score=35.10  Aligned_cols=42  Identities=10%  Similarity=0.089  Sum_probs=36.5

Q ss_pred             ccccccchHHHHHHHHhhCC---CCCcccHhHHHHHHHHHHHHHh
Q 045289           14 EEDRYLPIANISWIIKKAFP---ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        14 eqD~~LPiAnI~RIMK~aLP---~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      ..|+.+|++-..|+++++..   .+..++.+|.+++||.+-.|+.
T Consensus        58 st~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv  102 (136)
T 1tzy_C           58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV  102 (136)
T ss_dssp             CCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHH
T ss_pred             chhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHH
Confidence            45889999999999999943   5789999999999999888764

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=92.40  E-value=0.12  Score=35.97  Aligned_cols=43  Identities=9%  Similarity=0.009  Sum_probs=35.5

Q ss_pred             CccccccchHHHHHHHHhhCC-----CCCcccHhHHHHHHHHHHHHHh
Q 045289           13 QEEDRYLPIANISWIIKKAFP-----ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        13 reqD~~LPiAnI~RIMK~aLP-----~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +..++.+|++-..||++++.-     .+..++.+|.+++||.+-.|+.
T Consensus        72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV  119 (156)
T 3r45_A           72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLV  119 (156)
T ss_dssp             ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHH
Confidence            456899999999999999873     2578999999999999988874

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=91.57  E-value=0.19  Score=31.33  Aligned_cols=39  Identities=10%  Similarity=-0.008  Sum_probs=33.7

Q ss_pred             cccchHHHHHHHHhhCC-----CCCcccHhHHHHHHHHHHHHHh
Q 045289           17 RYLPIANISWIIKKAFP-----ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        17 ~~LPiAnI~RIMK~aLP-----~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +.+|++-.+|++|++-.     .+.+++.+|..++||.+-.|+.
T Consensus         2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv   45 (82)
T 3nqj_A            2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLV   45 (82)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHH
T ss_pred             CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHH
Confidence            46899999999999882     3679999999999999988874

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=90.99  E-value=0.14  Score=34.90  Aligned_cols=43  Identities=9%  Similarity=0.009  Sum_probs=35.5

Q ss_pred             CccccccchHHHHHHHHhhCC-----CCCcccHhHHHHHHHHHHHHHh
Q 045289           13 QEEDRYLPIANISWIIKKAFP-----ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        13 reqD~~LPiAnI~RIMK~aLP-----~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      +..|+.+|++-..|+++++.-     .+..++.+|.+++||.+-.|+.
T Consensus        56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv  103 (140)
T 3nqu_A           56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLV  103 (140)
T ss_dssp             ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHH
Confidence            456899999999999999872     3679999999999999988874

>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*

Probab=84.36  E-value=1.5  Score=27.36  Aligned_cols=40  Identities=18%  Similarity=0.207  Sum_probs=26.8

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhH--------HHHHHHHHHHHHhhccc
Q 045289           18 YLPIANISWIIKKAFPANDIITKNA--------KQIVQGCSKACSLARDE   59 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeA--------Ke~iqeCvsEFIl~~~~   59 (71)
                      .||+++|-|+|+..+  +.+++.+.        |..|.|.+.+-..++++
T Consensus        16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~   63 (89)
T 1bh9_B           16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEK   63 (89)
T ss_dssp             CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999998  44555554        44555555554455544

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=80.40  E-value=3  Score=27.23  Aligned_cols=34  Identities=15%  Similarity=0.207  Sum_probs=27.4

Q ss_pred             ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHH
Q 045289           16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGCS   50 (71)
Q Consensus        16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCv   50 (71)
                      .+.||++-|.|+||+.--.. +|+.+|...+..+.
T Consensus        21 gL~fPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvL   54 (123)
T 2nqb_C           21 GLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVM   54 (123)
T ss_dssp             TCSSCHHHHHHHHHHTTSCS-EECTHHHHHHHHHH
T ss_pred             CeeccHHHHHHHHHcccccc-ccchhhHHHHHHHH
Confidence            67899999999999984443 89999988766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d1n1ja_	87	a.22.1.3 (A:) Nuclear transcription factor Y subun	5e-04

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 5e-04
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSK 51
          YLPIAN++ I+K A P    I K+AK+ VQ C  
Sbjct: 2  YLPIANVARIMKNAIPQTGKIAKDAKECVQECVS 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	99.37
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	99.33
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	99.18
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	98.85
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	98.75
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	98.74
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	98.69
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	98.18
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	97.89
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	94.84
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	93.14
d1h3ob_	74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	87.9
d1bh9b_	89	TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}	80.23

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.8e-13  Score=82.78  Aligned_cols=40  Identities=43%  Similarity=0.623  Sum_probs=38.3

Q ss_pred             cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ++||+|+|.||||+.+|++.+||+||+.+|++|+.+||..
T Consensus         1 l~LP~a~v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~   40 (87)
T d1n1ja_           1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISF   40 (87)
T ss_dssp             CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHhHHHHHHHHhCCccccccHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999974

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.5e-13  Score=87.16  Aligned_cols=41  Identities=27%  Similarity=0.481  Sum_probs=39.0

Q ss_pred             cccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           15 EDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        15 qD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      +|++||+|+|.||||..+| +.+||+||+.+|++|+.+||+.
T Consensus         1 ddl~LP~a~I~kI~K~~~~-~~~is~dA~~~i~~a~~~Fi~~   41 (135)
T d1jfib_           1 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHL   41 (135)
T ss_dssp             CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHhhCCc-cchhhHHHHHHHHHHHHHHHHH
Confidence            5899999999999999998 7999999999999999999975

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=6.7e-12  Score=76.92  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=35.9

Q ss_pred             chHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           20 PIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        20 PiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      |+|+|.||||.++|++.+||+||+.+|++|+++||..
T Consensus         1 P~a~i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~   37 (89)
T d2bykb1           1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIF   37 (89)
T ss_dssp             CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999975

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=98.85  E-value=1.4e-09  Score=63.00  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=33.9

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      -||+|+|.||||+.+|  .+||+||++++++|+.+||..
T Consensus         2 ~LP~a~I~rI~k~~~~--~ris~ea~~~l~~a~e~Fi~~   38 (66)
T d1ku5a_           2 ELPIAPVDRLIRKAGA--ERVSEQAAKVLAEYLEEYAIE   38 (66)
T ss_dssp             CSCHHHHHHHHHHTTC--SEECHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhCcc--cccHHHHHHHHHHHHHHHHHH
Confidence            4999999999999986  489999999999999999963

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.6e-09  Score=62.15  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=34.8

Q ss_pred             cchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           19 LPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        19 LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ||+|.|.|||| ..|+..+||+||..+|+.|+.+||..
T Consensus         1 LP~srVkrImK-~~~~~~~is~ea~~~i~~a~E~Fi~~   37 (78)
T d1n1jb_           1 LPLARIKKIMK-LDEDVKMISAEAPVLFAKAAQIFITE   37 (78)
T ss_dssp             CCHHHHHHHHT-TSTTCCCBCTHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHh-cCCcccccchHHHHHHHHHHHHHHHH
Confidence            89999999999 58999999999999999999999964

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.74  E-value=4e-09  Score=69.56  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=34.1

Q ss_pred             cchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           19 LPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        19 LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      ||+|+|+||||+.+|. .+||++|+++|++|+.||+.
T Consensus         2 lP~a~I~rilk~~~~~-~ris~da~~~l~~~~~~~~~   37 (151)
T d1f1ea_           2 LPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAE   37 (151)
T ss_dssp             CCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHH
Confidence            8999999999999985 59999999999999999986

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=98.69  E-value=1.1e-08  Score=59.12  Aligned_cols=36  Identities=28%  Similarity=0.332  Sum_probs=33.1

Q ss_pred             cchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           19 LPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        19 LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      ||.|+|.||||...+  .+||+||.+++++|+.+||..
T Consensus         4 LP~a~I~ri~k~~~~--~ris~ea~~~l~~~~e~fi~~   39 (68)
T d1htaa_           4 LPIAPIGRIIKNAGA--ERVSDDARIALAKVLEEMGEE   39 (68)
T ss_dssp             SCHHHHHHHHHHTTC--SCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHCCc--chhhHHHHHHHHHHHHHHHHH
Confidence            999999999999876  479999999999999999963

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.4e-07  Score=51.07  Aligned_cols=38  Identities=13%  Similarity=0.108  Sum_probs=35.3

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA   56 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~   56 (71)
                      .+|+|.|-||||.. |...+||+||..++..++..||.-
T Consensus         2 ~fP~srVkkimk~~-~~~~~is~~A~~~~~~a~E~Fi~~   39 (66)
T d1jfia_           2 RFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLES   39 (66)
T ss_dssp             CCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHhcC-CccccccHHHHHHHHHHHHHHHHH
Confidence            48999999999988 888999999999999999999964

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.89  E-value=1.2e-05  Score=52.54  Aligned_cols=45  Identities=11%  Similarity=0.084  Sum_probs=38.6

Q ss_pred             CCCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289            9 RSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus         9 ~~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      ....+.++..+|.|.|.||||+.  ...+||+||.+++++|+.+|+.
T Consensus        70 ~~~~~~~~~~fp~a~IkRi~k~~--g~~ris~dA~~~l~~~~E~fi~  114 (151)
T d1f1ea_          70 EGVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATE  114 (151)
T ss_dssp             TTSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCccCHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHH
Confidence            34456678999999999999985  3558999999999999999985

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.84  E-value=0.017  Score=34.06  Aligned_cols=37  Identities=11%  Similarity=0.056  Sum_probs=32.2

Q ss_pred             cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      ..+|++.|.||++++  .-.+||+++.+.+.+++.+|+.
T Consensus         8 ~gI~k~~i~Riar~~--Gv~ris~d~~~~l~~~l~~~l~   44 (82)
T d2huec1           8 QGITKPAIRRLARRG--GVKRISGLIYEETRGVLKVFLE   44 (82)
T ss_dssp             CSSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHc--CcccchHHHHHHHHHHHHHHHH
Confidence            359999999999986  3456999999999999999974

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=93.14  E-value=0.067  Score=32.63  Aligned_cols=42  Identities=10%  Similarity=0.089  Sum_probs=36.7

Q ss_pred             ccccccchHHHHHHHHhhCC---CCCcccHhHHHHHHHHHHHHHh
Q 045289           14 EEDRYLPIANISWIIKKAFP---ANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        14 eqD~~LPiAnI~RIMK~aLP---~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      .-++.+|++-.+|++++...   ++.++.++|-+++|+++-.|+.
T Consensus        17 st~lLIpk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv   61 (95)
T d1tzyc_          17 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV   61 (95)
T ss_dssp             CCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHH
T ss_pred             CcccccccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHH
Confidence            35789999999999999863   5789999999999999998874

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.90  E-value=0.51  Score=27.52  Aligned_cols=37  Identities=8%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289           18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL   55 (71)
Q Consensus        18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl   55 (71)
                      -|-+.++..++++.=| +..+.+++.+++.+.+-+||-
T Consensus         3 il~K~~L~eLv~~idp-~~~ld~~vee~ll~iADdFV~   39 (74)
T d1h3ob_           3 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIE   39 (74)
T ss_dssp             SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHH
Confidence            3567788889998865 789999999999999999984

>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.23  E-value=1.2  Score=26.68  Aligned_cols=39  Identities=18%  Similarity=0.222  Sum_probs=26.7

Q ss_pred             cchHHHHHHHHhhCCCCCcccHh--------HHHHHHHHHHHHHhhccc
Q 045289           19 LPIANISWIIKKAFPANDIITKN--------AKQIVQGCSKACSLARDE   59 (71)
Q Consensus        19 LPiAnI~RIMK~aLP~~aKISKe--------AKe~iqeCvsEFIl~~~~   59 (71)
                      ||+++|-|||+..+.  ..||..        ||-.|-|.|.+-..+.+|
T Consensus        17 ~~K~~vkrl~~~~~g--~sv~~~v~i~v~giaKvFvGEiVE~A~~V~~~   63 (89)
T d1bh9b_          17 FPKAAIKRLIQSITG--TSVSQNVVIAMSGISKVFVGEVVEEALDVCEK   63 (89)
T ss_dssp             CCHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999984  345544        555555666555555543