Citrus Sinensis ID: 045291

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680--
Protein Sequence
YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNLIATRYCH
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccccccccccccEEEccccccccccccccHHHcccccccEEEccccccccccHHHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccccHHHHHccccccEEEcccccccccccccccHHHcccccccEEEcccccccccccHHcccccccccccccccccEEEcccccccccccccEEEccccEEEEEcccccccccccccEEEccccEEEEEcccccccccccccccEEEccccccccccccccccccccccEEEEEcccccccccHHHHHccccccEEEccccEEEccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEccccccccccccHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccccHHHcccccccEEEccccccccccccccHHHccccccEEEEEccccccccccHHHHHHHHHccEEEcccccccccccHHHHHHcccccEEEEccccccccccccHHHHcccccccEEEEccccccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHccccccccEEEEEcccccccccccHHHHccccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHccEEEcccc
Coil and Loop (DISEMBL)
ygglrklksfglsgvgirdgskllqsmgsfpslntldlsynnftDIAITTTQElhnftnleyltldESSLHISLLQSIASLFpslknlsisycevngvlrgqgfpsfksLEHLHMSFAPIALNTSFLQIIGEsmpslkylslsgsilgtnssrilDQGLCSLVHLQELRmadndlrgslpwclaNMTSLRILDVSfnqltgsisssplvhlTSIEMLilsdnhfqipisleplfnhsrlkifyadnnelnaeitqshsltapnfqLNRLLlsssygdgfifpkflyhqhdlefvdlshikmngefptwllennaKLETLFLIndsiggpfrlpihphrrlrfldvsnnnfqghmpveigdilpslfsfnistnalhgsipssfgnmkFLQILDlsnnhltgeipeyLAVGCVNLNSLALsnnnlqghmfsrnfnltNLKWLLLEgnrfvgeipqslskcssleglylnnnslsgkiprwlgnltrlqyiimpnnhlegpipvefcQLDLLQildisdnnisgrlipstfsnlkQIESLDLSYnklngkmphqlVELKTLEVFSVAYNNlsgeipewTAQFATfnessyegniflcglplpicispatmpeasigneqddnlidmdSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNLIATRYCH
Flexible Loop (DISEMBL)
ygglrklksfglsgvGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNLIATRYCH
Low Complexity Region (SEG)
YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVnlnslalsnnnlQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCqldllqildiSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNLIATRYCH
Disordered region (IsUnstruct)
***********LSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIG**QDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNLIATRYC*
Disordered Region (DISOPRED)
YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGL***************************DSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNLIATRYC*
Disordered Region (DISEMBL)
YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNLIATRYCH
Disordered Region (DISPRO)
*GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNLIATRYCH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNLIATRYCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	682	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.793	0.432	0.313	3e-52
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.856	0.467	0.301	7e-50
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.824	0.494	0.302	3e-46
Q9FL28	1173	LRR receptor-like serine/	no	no	0.589	0.342	0.340	4e-46
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.851	0.487	0.291	2e-41
Q9LRT1	1016	Probably inactive leucine	no	no	0.717	0.481	0.283	3e-41
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.953	0.538	0.289	4e-41
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.778	0.481	0.285	5e-41
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.853	0.509	0.296	1e-40
O65440	992	Leucine-rich repeat recep	no	no	0.791	0.544	0.296	1e-40

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  207 bits (526), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 200/637 (31%), Positives = 309/637 (48%), Gaps = 96/637 (15%)

Query: 25  QSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS 84
           + +    +L TLDLS NN T +     +E      LE+L L ++ L  SL ++I S   S
Sbjct: 282 KRLTELANLQTLDLSSNNLTGV---IHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTS 338

Query: 85  LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG 144
           LK L +S  +++G +                   P  ++         +  SLK L LS 
Sbjct: 339 LKQLFLSETQLSGEI-------------------PAEIS---------NCQSLKLLDLSN 370

Query: 145 SILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
           + L   + +I D  L  LV L  L + +N L G+L   ++N+T+L+   +  N L G + 
Sbjct: 371 NTL---TGQIPDS-LFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVP 426

Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF 264
              +  L  +E++ L +N F   + +E + N +RL+      N L+ EI  S        
Sbjct: 427 KE-IGFLGKLEIMYLYENRFSGEMPVE-IGNCTRLQEIDWYGNRLSGEIPSSIGRLK--- 481

Query: 265 QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPT----------WLLENNA 314
            L RL L  +   G I P  L + H +  +DL+  +++G  P+          +++ NN+
Sbjct: 482 DLTRLHLRENELVGNI-PASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNS 540

Query: 315 ----------KLETLFLINDSIGGPFRLPIHP----HRRLRFLDVSNNNFQGHMPVEIGD 360
                      L+ L  IN S    F   I P       L F DV+ N F+G +P+E+G 
Sbjct: 541 LQGNLPDSLINLKNLTRINFS-SNKFNGSISPLCGSSSYLSF-DVTENGFEGDIPLELGK 598

Query: 361 ----------------ILPSLFS-------FNISTNALHGSIPSSFGNMKFLQILDLSNN 397
                            +P  F         +IS N+L G IP   G  K L  +DL+NN
Sbjct: 599 STNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNN 658

Query: 398 HLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS 457
           +L+G IP +L    + L  L LS+N   G + +  F+LTN+  L L+GN   G IPQ + 
Sbjct: 659 YLSGVIPTWLGKLPL-LGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIG 717

Query: 458 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL-DLLQILDIS 516
              +L  L L  N LSG +P  +G L++L  + +  N L G IPVE  QL DL   LD+S
Sbjct: 718 NLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLS 777

Query: 517 DNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEW 576
            NN +GR IPST S L ++ESLDLS+N+L G++P Q+ ++K+L   +++YNNL G++ + 
Sbjct: 778 YNNFTGR-IPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK- 835

Query: 577 TAQFATFNESSYEGNIFLCGLPLPICISPATMPEASI 613
             QF+ +   ++ GN  LCG PL  C    +  + S+
Sbjct: 836 --QFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSL 870

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  199 bits (505), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 210/696 (30%), Positives = 328/696 (47%), Gaps = 112/696 (16%)

Query: 25  QSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS 84
           +S+    +L TLDLS NN T       +E  N + L  L L  + L  SL +SI S   +
Sbjct: 281 KSLADLGNLQTLDLSANNLTG---EIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTN 337

Query: 85  LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG 144
           L+ L +S  +++G +                   P+ L+            SLK L LS 
Sbjct: 338 LEQLVLSGTQLSGEI-------------------PVELS---------KCQSLKQLDLSN 369

Query: 145 SILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
           + L  +    + + L  LV L +L + +N L G+L   ++N+T+L+ L +  N L G + 
Sbjct: 370 NSLAGS----IPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLP 425

Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF 264
              +  L  +E+L L +N F   I  E + N + LK+     N    EI  S        
Sbjct: 426 KE-ISALRKLEVLFLYENRFSGEIPQE-IGNCTSLKMIDMFGNHFEGEIPPSIGRLK--- 480

Query: 265 QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPT--WLLENNAKLETLFLI 322
           +LN L L  +   G + P  L + H L  +DL+  +++G  P+    L+    LE L L 
Sbjct: 481 ELNLLHLRQNELVGGL-PASLGNCHQLNILDLADNQLSGSIPSSFGFLKG---LEQLMLY 536

Query: 323 NDSIGGPF------------------RL--PIHP----HRRLRFLDVSNNNFQGHMPVEI 358
           N+S+ G                    RL   IHP       L F DV+NN F+  +P+E+
Sbjct: 537 NNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSF-DVTNNGFEDEIPLEL 595

Query: 359 GDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA 418
           G+   +L    +  N L G IP + G ++ L +LD+S+N LTG IP  L + C  L  + 
Sbjct: 596 GNS-QNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVL-CKKLTHID 653

Query: 419 LSNNNLQGHM--------------FSRN----------FNLTNLKWLLLEGNRFVGEIPQ 454
           L+NN L G +               S N          FN T L  L L+GN   G IPQ
Sbjct: 654 LNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQ 713

Query: 455 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL-DLLQIL 513
            +    +L  L L+ N  SG +P+ +G L++L  + +  N L G IPVE  QL DL   L
Sbjct: 714 EIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSAL 773

Query: 514 DISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI 573
           D+S NN +G  IPST   L ++E+LDLS+N+L G++P  + ++K+L   +V++NNL G++
Sbjct: 774 DLSYNNFTGD-IPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL 832

Query: 574 PEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTT 633
            +   QF+ +   S+ GN  LCG PL  C            N+Q    +   S  I    
Sbjct: 833 KK---QFSRWPADSFLGNTGLCGSPLSRC------NRVRSNNKQQG--LSARSVVIISAI 881

Query: 634 SYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSY 669
           S +  I  +++V+ +  ++++R  +F ++   S +Y
Sbjct: 882 SALTAIGLMILVIAL--FFKQRHDFFKKVGHGSTAY 915

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  187 bits (475), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 195/645 (30%), Positives = 301/645 (46%), Gaps = 83/645 (12%)

Query: 39  SYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGV 98
           SYN  T         L N  +L+YL LD + L  +L  +I++   SL +LS S  E+ GV
Sbjct: 194 SYNQLTG---EIPASLGNLQSLQYLWLDFNLLQGTLPSAISNC-SSLVHLSASENEIGGV 249

Query: 99  LRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNS----SRI 154
           +    + +   LE L +S      N +F   +  S+      SL+   LG N+     R 
Sbjct: 250 IPA-AYGALPKLEVLSLS------NNNFSGTVPFSL--FCNTSLTIVQLGFNAFSDIVRP 300

Query: 155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSI 214
                C    LQ L + +N + G  P  L N+ SL+ LDVS N  +G I    + +L  +
Sbjct: 301 ETTANCR-TGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPD-IGNLKRL 358

Query: 215 EMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSS 274
           E L L++N                         E+  EI Q  SL   +F+ N L     
Sbjct: 359 EELKLANNSL---------------------TGEIPVEIKQCGSLDVLDFEGNSL----- 392

Query: 275 YGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPI 334
              G I P+FL +   L+ + L     +G  P+ ++ N  +LE L L  +++ G F + +
Sbjct: 393 --KGQI-PEFLGYMKALKVLSLGRNSFSGYVPSSMV-NLQQLERLNLGENNLNGSFPVEL 448

Query: 335 HPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394
                L  LD+S N F G +PV I + L +L   N+S N   G IP+S GN+  L  LDL
Sbjct: 449 MALTSLSELDLSGNRFSGAVPVSISN-LSNLSFLNLSGNGFSGEIPASVGNLFKLTALDL 507

Query: 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ 454
           S  +++GE+P  L+ G  N+  +AL  NN  G +     +L +L+++ L  N F GEIPQ
Sbjct: 508 SKQNMSGEVPVELS-GLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQ 566

Query: 455 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514
           +      L  L L++N +SG IP  +GN + L+ + + +N L G IP +  +L  L++LD
Sbjct: 567 TFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLD 626

Query: 515 ISDNNISGRL-----------------------IPSTFSNLKQIESLDLSYNKLNGKMPH 551
           +  NN+SG +                       IP +FS L  +  +DLS N L G++P 
Sbjct: 627 LGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPA 686

Query: 552 QLVELKT-LEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPE 610
            L  + + L  F+V+ NNL GEIP         N S + GN  LCG PL      +T   
Sbjct: 687 SLALISSNLVYFNVSSNNLKGEIPASLGSRIN-NTSEFSGNTELCGKPLNRRCESST--- 742

Query: 611 ASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRR 655
            + G ++   +I M    +    ++++ +F    V Y    WR++
Sbjct: 743 -AEGKKKKRKMILM--IVMAAIGAFLLSLFCCFYV-YTLLKWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  186 bits (473), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 223/443 (50%), Gaps = 41/443 (9%)

Query: 159 LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLI 218
           L  LVHLQ    A N L GS+P  +  + +L  LD+S NQLTG I      +L +++ L+
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 219 LSDNHFQIPISLEPLFNHSRLKIFYADNN---ELNAEITQSHSLTAPNFQLNRLLLSSSY 275
           L++N  +  I  E     S +++   DN    ++ AE+     L A     N+L  S   
Sbjct: 247 LTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSS--- 303

Query: 276 GDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWL--LENNAKLETLFLINDSIGGPFRLP 333
                 P  L+    L  + LS   + G     +  LE+   LE L L +++  G F   
Sbjct: 304 -----IPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQS 355

Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
           I   R L  L V  NN  G +P ++G +L +L + +   N L G IPSS  N   L++LD
Sbjct: 356 ITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLD 414

Query: 394 LSNNHLTGEIPE--------YLAVG--------------CVNLNSLALSNNNLQGHMFSR 431
           LS+N +TGEIP         ++++G              C NL +L++++NNL G +   
Sbjct: 415 LSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPL 474

Query: 432 NFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIM 491
              L  L+ L +  N   G IP+ +     L  LYL++N  +G+IPR + NLT LQ + M
Sbjct: 475 IGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRM 534

Query: 492 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH 551
            +N LEGPIP E   + LL +LD+S+N  SG+ IP+ FS L+ +  L L  NK NG +P 
Sbjct: 535 YSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQ-IPALFSKLESLTYLSLQGNKFNGSIPA 593

Query: 552 QLVELKTLEVFSVAYNNLSGEIP 574
            L  L  L  F ++ N L+G IP
Sbjct: 594 SLKSLSLLNTFDISDNLLTGTIP 616

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  171 bits (433), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 198/679 (29%), Positives = 305/679 (44%), Gaps = 98/679 (14%)

Query: 23  LLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLF 82
           L + +     L  LDLSYN        +  ELHN + L  ++ +     I L+       
Sbjct: 226 LPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAE----LIGLIPPELGNC 281

Query: 83  PSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSL--KYL 140
            SLK+L +S+  ++G L             L +S  P+   ++    +  S+PS   K+ 
Sbjct: 282 KSLKSLMLSFNSLSGPL------------PLELSEIPLLTFSAERNQLSGSLPSWMGKWK 329

Query: 141 SLSGSILGTNS-SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQL 199
            L   +L  N  S  +   +     L+ L +A N L GS+P  L    SL  +D+S N L
Sbjct: 330 VLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLL 389

Query: 200 TGSISSSPLVHLTSIEMLILSDNHF--QIPISLEPLFNHSRLKIFYADNNELNAEITQSH 257
           +G+I        +S+  L+L++N     IP  L  L     L     D+N    EI +S 
Sbjct: 390 SGTIEEV-FDGCSSLGELLLTNNQINGSIPEDLWKL----PLMALDLDSNNFTGEIPKSL 444

Query: 258 SLTAPNFQLNRLLLSSSYG--DGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAK 315
             +      N +  ++SY   +G++ P  + +   L+ + LS  ++ GE P  +     K
Sbjct: 445 WKST-----NLMEFTASYNRLEGYL-PAEIGNAASLKRLVLSDNQLTGEIPREI----GK 494

Query: 316 LETLFLIN---DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIST 372
           L +L ++N   +   G   + +     L  LD+ +NN QG +P +I   L  L    +S 
Sbjct: 495 LTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKI-TALAQLQCLVLSY 553

Query: 373 NALHGSIPSS---------FGNMKFLQ---ILDLSNNHLTGEIPEYLAVGCVNLNSLALS 420
           N L GSIPS            ++ FLQ   I DLS N L+G IPE L   C+ L  ++LS
Sbjct: 554 NNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGE-CLVLVEISLS 612

Query: 421 NNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 480
           NN+L G + +    LTNL  L L GN   G IP+ +     L+GL L NN L+G IP   
Sbjct: 613 NNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESF 672

Query: 481 GNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL---------------- 524
           G L  L  + +  N L+GP+P     L  L  +D+S NN+SG L                
Sbjct: 673 GLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIE 732

Query: 525 -------IPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWT 577
                  IPS   NL Q+E LD+S N L+G++P ++  L  LE  ++A NNL GE+P   
Sbjct: 733 QNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPS-D 791

Query: 578 AQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYII 637
                 +++   GN  LCG                +G+   D  I+       +  + ++
Sbjct: 792 GVCQDPSKALLSGNKELCG--------------RVVGS---DCKIEGTKLRSAWGIAGLM 834

Query: 638 VIFGIVIVLYVNSYWRRRW 656
           + F I++ ++V S   RRW
Sbjct: 835 LGFTIIVFVFVFSL--RRW 851

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  170 bits (431), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 163/574 (28%), Positives = 275/574 (47%), Gaps = 85/574 (14%)

Query: 164 HLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH 223
           HLQ+L ++ N+L G +P  L ++TSL+ LD++ N  +G++S     + +S+  L LS NH
Sbjct: 125 HLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNH 184

Query: 224 F--QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLL---LSSSYGDG 278
              QIP +L   F  S L       N  +     + S  +  ++L RL    LSS+   G
Sbjct: 185 LEGQIPSTL---FRCSVLNSLNLSRNRFSG----NPSFVSGIWRLERLRALDLSSNSLSG 237

Query: 279 FIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHR 338
            I P  +   H+L+ + L   + +G  P+ +      L  + L ++   G     +   +
Sbjct: 238 SI-PLGILSLHNLKELQLQRNQFSGALPSDI-GLCPHLNRVDLSSNHFSGELPRTLQKLK 295

Query: 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH 398
            L   DVSNN   G  P  IGD +  L   + S+N L G +PSS  N++ L+ L+LS N 
Sbjct: 296 SLNHFDVSNNLLSGDFPPWIGD-MTGLVHLDFSSNELTGKLPSSISNLRSLKDLNLSENK 354

Query: 399 LTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK 458
           L+GE+PE L   C  L  + L  N+  G++    F+L  L+ +   GN   G IP+  S+
Sbjct: 355 LSGEVPESLE-SCKELMIVQLKGNDFSGNIPDGFFDL-GLQEMDFSGNGLTGSIPRGSSR 412

Query: 459 C-SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH---------------------- 495
              SL  L L++NSL+G IP  +G    ++Y+ +  NH                      
Sbjct: 413 LFESLIRLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRN 472

Query: 496 --LEGPIPVEFCQLDLLQILDISDNNISGRL-----------------------IPSTFS 530
             L G +P + C+   LQIL +  N+++G +                       IP + S
Sbjct: 473 SALIGSVPADICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTGPIPKSLS 532

Query: 531 NLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEG 590
           NL++++ L L  NKL+G++P +L +L+ L + +V++N L G +P     F + ++S+ +G
Sbjct: 533 NLQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPLGDV-FQSLDQSAIQG 591

Query: 591 NIFLCG----------LPLPICISPAT------MP--EASIGNEQDDNLIDMDSFFITFT 632
           N+ +C           +P P+ I+P +      MP   AS G+      + +    I   
Sbjct: 592 NLGICSPLLRGPCTLNVPKPLVINPNSYGNGNNMPGNRASGGSGTFHRRMFLSVSVIVAI 651

Query: 633 TSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITS 666
           ++ I++  G++I+  +N+  RRR   FV+  + S
Sbjct: 652 SAAILIFSGVIIITLLNASVRRR-LAFVDNALES 684

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  170 bits (430), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 208/719 (28%), Positives = 316/719 (43%), Gaps = 69/719 (9%)

Query: 1   YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNL 60
           +G    LKS  LS   +    K +    +F SL  LDLSYNN +   +        F  L
Sbjct: 156 FGVCSNLKSLNLSKNFLDPPGKEMLKAATF-SLQVLDLSYNNISGFNLFPWVSSMGFVEL 214

Query: 61  EYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFK---SLEHLHMS- 116
           E+ +L  + L        A   P L   ++SY +++       FPSFK   +L+HL +S 
Sbjct: 215 EFFSLKGNKL--------AGSIPELDFKNLSYLDLSANNFSTVFPSFKDCSNLQHLDLSS 266

Query: 117 ---FAPIA-----------LNTSFLQIIG--ESMPS--LKYLSLSGS-ILGTNSSRILDQ 157
              +  I            LN +  Q +G    +PS  L+YL L G+   G   +++ D 
Sbjct: 267 NKFYGDIGSSLSSCGKLSFLNLTNNQFVGLVPKLPSESLQYLYLRGNDFQGVYPNQLAD- 325

Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
            LC  V   EL ++ N+  G +P  L   +SL ++D+S+N  +G +    L  L++I+ +
Sbjct: 326 -LCKTV--VELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTM 382

Query: 218 ILSDNHF--QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSY 275
           +LS N F   +P S   L    +L+     +N L   +  S     P   L  L L ++ 
Sbjct: 383 VLSFNKFVGGLPDSFSNLL---KLETLDMSSNNLTG-VIPSGICKDPMNNLKVLYLQNNL 438

Query: 276 GDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIH 335
             G I P  L +   L  +DLS   + G  P+ L  + +KL+ L L  + + G     + 
Sbjct: 439 FKGPI-PDSLSNCSQLVSLDLSFNYLTGSIPSSL-GSLSKLKDLILWLNQLSGEIPQELM 496

Query: 336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLS 395
             + L  L +  N+  G +P  + +    L   ++S N L G IP+S G +  L IL L 
Sbjct: 497 YLQALENLILDFNDLTGPIPASLSNCT-KLNWISLSNNQLSGEIPASLGRLSNLAILKLG 555

Query: 396 NNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLT-NLKWLLLEGNRFVGEIPQ 454
           NN ++G IP  L   C +L  L L+ N L G +    F  + N+   LL G R+V     
Sbjct: 556 NNSISGNIPAELG-NCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKND 614

Query: 455 SLSKCSS----LEGLYLNNNSLSGKIPRWLGNLTRL-QYIIMPN--------------NH 495
              +C      LE   +    L     R   N TR+ + I  P               N 
Sbjct: 615 GSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNK 674

Query: 496 LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE 555
           LEG IP E   +  L IL++  N++SG +IP     LK +  LDLSYN+ NG +P+ L  
Sbjct: 675 LEGSIPKELGAMYYLSILNLGHNDLSG-MIPQQLGGLKNVAILDLSYNRFNGTIPNSLTS 733

Query: 556 LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGN 615
           L  L    ++ NNLSG IPE +A F TF +  +  N  LCG PLPI  S     +A+   
Sbjct: 734 LTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANN-SLCGYPLPIPCSSGPKSDANQHQ 791

Query: 616 EQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNN 674
           +       +           +  IFG++IV       RR+    +E ++   S+    N
Sbjct: 792 KSHRRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRRKKEAALEAYMDGHSHSATAN 850

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  169 bits (429), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 165/577 (28%), Positives = 256/577 (44%), Gaps = 46/577 (7%)

Query: 22  KLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASL 81
           KL  S+G    L  LDLSYN  +       +E+ N ++LE L L+ +     +   I  L
Sbjct: 88  KLSPSIGGLVHLKQLDLSYNGLSG---KIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKL 144

Query: 82  FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
             SL+NL I    ++G L                   P+         IG  +   + ++
Sbjct: 145 V-SLENLIIYNNRISGSL-------------------PVE--------IGNLLSLSQLVT 176

Query: 142 LSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTG 201
            S +I G      L + + +L  L   R   N + GSLP  +    SL +L ++ NQL+G
Sbjct: 177 YSNNISGQ-----LPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSG 231

Query: 202 SISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA 261
            +    +  L  +  +IL +N F   I  E + N + L+      N+L   I +      
Sbjct: 232 ELPKE-IGMLKKLSQVILWENEFSGFIPRE-ISNCTSLETLALYKNQLVGPIPKELG--- 286

Query: 262 PNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFL 321
            + Q    L     G     P+ + +      +D S   + GE P   L N   LE L+L
Sbjct: 287 -DLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLE-LGNIEGLELLYL 344

Query: 322 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS 381
             + + G   + +   + L  LD+S N   G +P+     L  LF   +  N+L G+IP 
Sbjct: 345 FENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGF-QYLRGLFMLQLFQNSLSGTIPP 403

Query: 382 SFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL 441
             G    L +LD+S+NHL+G IP YL +   N+  L L  NNL G++ +       L  L
Sbjct: 404 KLGWYSDLWVLDMSDNHLSGRIPSYLCLHS-NMIILNLGTNNLSGNIPTGITTCKTLVQL 462

Query: 442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP 501
            L  N  VG  P +L K  ++  + L  N   G IPR +GN + LQ + + +N   G +P
Sbjct: 463 RLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELP 522

Query: 502 VEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEV 561
            E   L  L  L+IS N ++G  +PS   N K ++ LD+  N  +G +P ++  L  LE+
Sbjct: 523 REIGMLSQLGTLNISSNKLTGE-VPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLEL 581

Query: 562 FSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598
             ++ NNLSG IP      +   E    GN+F   +P
Sbjct: 582 LKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIP 618

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 197/664 (29%), Positives = 294/664 (44%), Gaps = 82/664 (12%)

Query: 6   KLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTL 65
           ++    LSG G+  G     +  S  SL+ L LS N F   + +        T   +L L
Sbjct: 79  RVTEINLSGSGL-SGIVSFNAFTSLDSLSVLKLSENFFVLNSTSLLLLPLTLT---HLEL 134

Query: 66  DESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTS 125
             S L  +L ++  S + +L ++++SY    G L    F S K L+ L +S+  I    S
Sbjct: 135 SSSGLIGTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPIS 194

Query: 126 FLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLAN 185
            L I   S  S+ YL  SG+ +    S  +   L +  +L+ L ++ N+  G +P     
Sbjct: 195 GLTIPLSSCVSMTYLDFSGNSI----SGYISDSLINCTNLKSLNLSYNNFDGQIPKSFGE 250

Query: 186 MTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYAD 245
           +  L+ LD+S N+LTG I         S++ L LS N+F   I  E L + S L+     
Sbjct: 251 LKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIP-ESLSSCSWLQSLDLS 309

Query: 246 NNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEF 305
           NN ++     +   +  + Q+  LLLS++   G  FP  +     L   D S  + +G  
Sbjct: 310 NNNISGPFPNTILRSFGSLQI--LLLSNNLISG-DFPTSISACKSLRIADFSSNRFSGVI 366

Query: 306 PTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365
           P  L    A LE L L ++ + G     I     LR +D+S N   G +P EIG+ L  L
Sbjct: 367 PPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGN-LQKL 425

Query: 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ 425
             F    N + G IP   G ++ L+ L L+NN LTGEIP      C N+  ++ ++N L 
Sbjct: 426 EQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEF-FNCSNIEWVSFTSNRLT 484

Query: 426 GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL-- 483
           G +      L+ L  L L  N F GEIP  L KC++L  L LN N L+G+IP  LG    
Sbjct: 485 GEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPG 544

Query: 484 ----------TRLQYIIMPNNHLEGPIP-VEFCQLD---LLQILDISDNNI----SGRLI 525
                       + ++    N  +G    VEF  +    LLQI  +   +     SG ++
Sbjct: 545 SKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPIL 604

Query: 526 PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP----------- 574
            S F+  + IE LDLSYN+L GK+P ++ E+  L+V  +++N LSGEIP           
Sbjct: 605 -SLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGV 663

Query: 575 ------------------------------EWT------AQFATFNESSYEGNIFLCGLP 598
                                         E T       Q +T   + Y  N  LCG+P
Sbjct: 664 FDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYANNPGLCGVP 723

Query: 599 LPIC 602
           LP C
Sbjct: 724 LPEC 727

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  168 bits (425), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 176/594 (29%), Positives = 274/594 (46%), Gaps = 54/594 (9%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSI 90
           PSL  LD+S N+F+       +E++  + LE L +  +     L     S    L  L  
Sbjct: 101 PSLVFLDISSNSFSG---ELPKEIYELSGLEVLNISSNVFEGELETRGFSQMTQLVTLDA 157

Query: 91  SYCEVNGVLRGQGFPSFKSLEHLHM--SFAPIALNTSFLQIIGESMPSLKYLSLSGSILG 148
                NG L      +   LEHL +  ++    +  S+      S  SLK+LSLSG+ L 
Sbjct: 158 YDNSFNGSLP-LSLTTLTRLEHLDLGGNYFDGEIPRSY-----GSFLSLKFLSLSGNDL- 210

Query: 149 TNSSRILDQGLCSLVHLQELRMAD-NDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSP 207
               RI ++ L ++  L +L +   ND RG +P     + +L  LD++   L GSI +  
Sbjct: 211 --RGRIPNE-LANITTLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAE- 266

Query: 208 LVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLN 267
           L +L ++E+L L  N     +  E L N + LK     NN L  EI    S      QL 
Sbjct: 267 LGNLKNLEVLFLQTNELTGSVPRE-LGNMTSLKTLDLSNNFLEGEIPLELS-GLQKLQLF 324

Query: 268 RLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG 327
            L  +  +G+    P+F+    DL+ + L H    G+ P+ L  +N  L  + L  + + 
Sbjct: 325 NLFFNRLHGE---IPEFVSELPDLQILKLWHNNFTGKIPSKL-GSNGNLIEIDLSTNKLT 380

Query: 328 GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMK 387
           G     +   RRL+ L + NN   G +P ++G   P L+ F +  N L   +P     + 
Sbjct: 381 GLIPESLCFGRRLKILILFNNFLFGPLPEDLGQCEP-LWRFRLGQNFLTSKLPKGLIYLP 439

Query: 388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLA---LSNNNLQGHMFSRNFNLTNLKWLLLE 444
            L +L+L NN LTGEIPE  A G    +SL    LSNN L G +     NL +L+ LLL 
Sbjct: 440 NLSLLELQNNFLTGEIPEEEA-GNAQFSSLTQINLSNNRLSGPIPGSIRNLRSLQILLLG 498

Query: 445 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 504
            NR  G+IP  +    SL  + ++ N+ SGK P   G+   L Y+ + +N + G IPV+ 
Sbjct: 499 ANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQIPVQI 558

Query: 505 CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV 564
            Q+ +L  L++                         S+N  N  +P++L  +K+L     
Sbjct: 559 SQIRILNYLNV-------------------------SWNSFNQSLPNELGYMKSLTSADF 593

Query: 565 AYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQD 618
           ++NN SG +P  + QF+ FN +S+ GN FLCG     C       ++ + N+ +
Sbjct: 594 SHNNFSGSVPT-SGQFSYFNNTSFLGNPFLCGFSSNPCNGSQNQSQSQLLNQNN 646

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	682
224102049	577	predicted protein [Populus trichocarpa]	0.752	0.889	0.490	1e-137
224120284	929	predicted protein [Populus trichocarpa]	0.948	0.696	0.4	1e-119
255581263	912	serine-threonine protein kinase, plant-t	0.681	0.509	0.492	1e-119
224134597	947	predicted protein [Populus trichocarpa]	0.906	0.652	0.394	1e-115
224144186	973	predicted protein [Populus trichocarpa]	0.920	0.645	0.394	1e-113
224134609	676	predicted protein [Populus trichocarpa]	0.854	0.862	0.402	1e-111
224142723	923	predicted protein [Populus trichocarpa]	0.885	0.654	0.383	1e-109
224142721	926	predicted protein [Populus trichocarpa]	0.925	0.681	0.371	1e-109
224106948	658	predicted protein [Populus trichocarpa]	0.819	0.849	0.407	1e-109
224142717	876	predicted protein [Populus trichocarpa]	0.888	0.691	0.392	1e-108

>gi|224102049|ref|XP_002334215.1| predicted protein [Populus trichocarpa] gi|222870030|gb|EEF07161.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/573 (49%), Positives = 361/573 (63%), Gaps = 60/573 (10%)

Query: 159 LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLI 218
           LC L  LQEL ++ N++ GSLP C +N+T+L+ LD+SFN  TG+IS SP+  LTSI  L 
Sbjct: 7   LCELKQLQELDISYNNITGSLPSCFSNLTNLQALDISFNHFTGNISLSPIGSLTSIRDLN 66

Query: 219 LSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDG 278
           LSDNHFQIPISL P FN S LK    D NEL       H+L  P FQL RL L+ + G G
Sbjct: 67  LSDNHFQIPISLGPFFNLSNLKNLNGDRNELYESTELVHNLI-PRFQLQRLSLAYT-GSG 124

Query: 279 FIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHR 338
             F K LY+QHDL+FVDLSHIKM GEFP+WLL+NN KLE L+L+N+S  G F+L  H   
Sbjct: 125 GTFLKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEELYLVNNSFSGSFQLANHSLD 184

Query: 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH 398
           RL  LD+S N+    +P EIG   P L   N+S N   GSIPSS  NM  L+ILDLSNN 
Sbjct: 185 RLSHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFGGSIPSSISNMSSLEILDLSNNE 244

Query: 399 LTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK 458
           L+G IPE+L   C++L  L LSNN+L+G  F RNFNL  L  L+L GN+  G +P SLS 
Sbjct: 245 LSGNIPEHLVEDCLSLRGLVLSNNHLKGQFFWRNFNLAYLTDLILSGNQLTGILPNSLSN 304

Query: 459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC------------- 505
            S LE L ++ N+LSGKIPRW+ N++ L+Y+ +  N+L G +P  FC             
Sbjct: 305 GSRLEALDVSLNNLSGKIPRWIRNMSSLEYLDLSENNLFGSLPSSFCSSMMMTEVYLSKN 364

Query: 506 -----------------QLDL------------------LQILDISDNNISGRLIPSTFS 530
                            +LDL                  +Q+L++S N+++G  IP TFS
Sbjct: 365 KLEGSLIDAFDGCLSLNKLDLSHNSLTGEIPFKLGYLGNIQVLNLSHNSLTGP-IPPTFS 423

Query: 531 NLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEG 590
           NLK+IESLD+SYN LNG++P+QLV+L +L  FSVAYNNLSG+ PE  AQFATFN SSYEG
Sbjct: 424 NLKKIESLDISYNNLNGEIPYQLVDLDSLSAFSVAYNNLSGKTPERAAQFATFNRSSYEG 483

Query: 591 NIFLCGLPLPICISPATMPE--ASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYV 648
           N  LCG PL    +   +P   +S G       IDM +F++TF+ +YII +  I  VLY+
Sbjct: 484 NPLLCGPPLTNNCTGEILPSPLSSYG------FIDMQAFYVTFSVAYIINLLAIGAVLYI 537

Query: 649 NSYWRRRWFYFVEMWITSCSYFVVNNL-IATRY 680
           N +WRR WFYF+   I +C YF+V+NL +  R+
Sbjct: 538 NPHWRRAWFYFIRESINNCYYFLVDNLHVPARF 570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 294/735 (40%), Positives = 405/735 (55%), Gaps = 88/735 (11%)

Query: 16  GIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEY-----LTLDESSL 70
           G R  + +L S     SL  L L  N+         + +  F NL       +T +   +
Sbjct: 192 GNRFDNSILSSFKGLSSLKNLGLEKNHLK--GTFNMKGIRGFGNLSRVRLFNITANGRRI 249

Query: 71  HISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQII 130
            + LLQS+A L P+LK L +      G +  Q  PS K+L  L +S +   L+ SFLQ I
Sbjct: 250 SLPLLQSLAKL-PNLKTLDLGNNNFEGTILAQALPSLKNLHKLDLSSS--TLDNSFLQTI 306

Query: 131 GESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLR 190
           G  + +L  L L+G  L  + S  + +GLC L HLQ L +++N L G LP CLAN+TSL+
Sbjct: 307 GR-ITTLTSLKLNGCRL--SGSIPIAEGLCELKHLQSLDISNNSLTGVLPKCLANLTSLK 363

Query: 191 ILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELN 250
            +D+S N   G ISSSPL+ LTSI+ L LSDN+FQIPISL    NHS LK F+  NNE+ 
Sbjct: 364 QIDLSSNHFGGDISSSPLITLTSIQELRLSDNNFQIPISLRSFSNHSELKFFFGYNNEIC 423

Query: 251 AEITQSHSLTAPNFQLNRLLLSS-SYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWL 309
           AE+ + H+L  P FQL RL LS  +YG    FPKFL++QH+L  +  S+++M G  P WL
Sbjct: 424 AEL-EEHNLI-PKFQLQRLHLSGQAYGGALPFPKFLFYQHNLREIYFSNMRMRGGVPNWL 481

Query: 310 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369
           LENN  L  LFL+N+S+ GPF+LPIHPH  L  LD+S+N+   H+P EIG   PSL   +
Sbjct: 482 LENNTNLHELFLVNNSLSGPFQLPIHPHVSLSQLDISDNHLDSHIPTEIGAYFPSLTFLS 541

Query: 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHM- 428
           +S N  +G IPSSFG M  L +LDLS N+++G++P   +   + L  + LS N LQG + 
Sbjct: 542 MSKNHFNGIIPSSFGYMSSLLVLDLSENNISGKLPSCFS--SLPLVHVYLSQNKLQGSLE 599

Query: 429 --FSRNFNL---------------------TNLKWLLLEGNRFVGEIPQSLSKCSSLEGL 465
             F ++F L                     +++ +LLL  N   G IP  L K   L  +
Sbjct: 600 DAFHKSFELITLDLSHNQLTGNISEWIGEFSHMSYLLLGYNNLEGRIPNQLCKLDKLSFI 659

Query: 466 YLNNNSLSGKI--------PRWLGNLTRL--QYII------------------------- 490
            L++N  SG I          W  NL     +Y+I                         
Sbjct: 660 DLSHNKFSGHILPCLRFRSSIWYSNLRIYPDRYLIREPLEITTKSVSYSYPISILNIMSG 719

Query: 491 --MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK 548
             +  N+L G IP E   L+ + +L++S+N + G  IP TFSNL ++ESLDLS N L G 
Sbjct: 720 MDLSCNNLTGEIPPEIGNLNHIHVLNLSNNFLIGP-IPQTFSNLSEVESLDLSNNSLTGA 778

Query: 549 MPHQLVELKTLEVFSVAYNNLSGEI-PEWTAQFATFNESSYEGNIFLCGLPLPICISPAT 607
           +P  LV+L  LEVFSVA+NNLSG   P    QF+TFNESSYEGN  LCG PL    +   
Sbjct: 779 IPPGLVQLHYLEVFSVAHNNLSGRTPPNMIPQFSTFNESSYEGNPLLCGPPLSRHCTTQE 838

Query: 608 MPEA-------SIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFV 660
             EA       S  + ++   +D D F+++F  +YI+++     +LY+N  WRR WFYF+
Sbjct: 839 EEEASSLPKRTSTDDIEESGFMDTDVFYVSFVVTYIMMLLVTAAILYINPNWRRAWFYFI 898

Query: 661 EMWITSCSYFVVNNL 675
           +  I +C YF V+NL
Sbjct: 899 KQSINNCYYFFVDNL 913

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/499 (49%), Positives = 329/499 (65%), Gaps = 34/499 (6%)

Query: 99  LRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQG 158
           ++ Q  P+F++LE L++    I L  SFLQ +G  M SLK LSLSG  L      +  QG
Sbjct: 168 IQAQDLPNFENLEELYLD--KIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV--QG 222

Query: 159 LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLI 218
           LC L+HL+ L ++ N+  G LPWCL+N+TSL++LD+S NQ  G IS+SPL  L S+  L 
Sbjct: 223 LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 219 LSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDG 278
           +S+NHFQ+P SL P FNHS LK     NN +  E  + HS  AP FQL  ++ S  YG  
Sbjct: 283 VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLE-AELHS--APRFQLISIIFSG-YGIC 338

Query: 279 FIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHR 338
             FP FLYHQ++L+FVDLSH+ + GEFP WLL NN +LE L L+N+S+ G  +LP+HPH 
Sbjct: 339 GTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHV 398

Query: 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH 398
            L  LD+SNN+   H+P+EIG  LP L   N+S+N   GSIPSSFGNM  L+ILDLSNN 
Sbjct: 399 NLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQ 458

Query: 399 LTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK 458
           L+G IPE+LA GC +LN+L LSNN+LQG MFS+ FNLTNL WL L+ N F G IP+SLSK
Sbjct: 459 LSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK 518

Query: 459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518
            S+L  + L++N LSG IP W+GNL+ LQ +I+ NN L+GPIPVEFCQL  L++LD+++N
Sbjct: 519 -SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANN 577

Query: 519 NISGRLIPS-----------------------TFSNLKQIESLDLSYNKLNGKMPHQLVE 555
           ++SG ++PS                        FS    + +LDLS N++ G++P  +  
Sbjct: 578 SVSG-ILPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGG 636

Query: 556 LKTLEVFSVAYNNLSGEIP 574
           +  L + ++  N   GEIP
Sbjct: 637 INALRILNLKSNRFDGEIP 655

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 301/763 (39%), Positives = 412/763 (53%), Gaps = 145/763 (19%)

Query: 22  KLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASL 81
           +LLQS+G+FPSL TL L+ N+F    +    EL N ++L+ L +D  SL    LQS+ +L
Sbjct: 215 QLLQSLGAFPSLMTLYLNKNDFRGRILG--DELQNLSSLKSLYMDGCSLDEHSLQSLGAL 272

Query: 82  FPSLKNLSISYCEVNGVLRGQGFPSFKSLEH---------------LHMSFAPIALNTSF 126
            PSLKNL +    ++G +  +GF   K+LE+               + M     ALN   
Sbjct: 273 -PSLKNLLLR--ALSGSVPSRGFLDLKNLEYLDLNLNTLNNSIFQAIRMMTFLKALNLHG 329

Query: 127 LQIIGE--------SMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGS 178
            ++ G         ++ +L++L LS + L  ++S     GLC L HLQ+L M DNDL G 
Sbjct: 330 CKLDGRIPLAQGFLNLKNLEHLDLSSNTL--DNSIFQTIGLCDLNHLQQLYMYDNDLSGF 387

Query: 179 LPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSR 238
           LP CLAN+TSL+ LD+SFN                         H +IP+SL PL+N S+
Sbjct: 388 LPPCLANLTSLQQLDLSFN-------------------------HLKIPMSLSPLYNLSK 422

Query: 239 LKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSH 298
           LK F   +NE+ AE    HSL+ P FQL  + LS+       FPKFLYHQ  L+  DL++
Sbjct: 423 LKYFIGSDNEIYAE-EDDHSLS-PKFQLESISLSNRGQGAGAFPKFLYHQFSLQSFDLTN 480

Query: 299 IKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEI 358
           I++ GEFP WL+ENN  L  L L N S+ GPF LP + H  L FL +S N FQG +P+EI
Sbjct: 481 IQIKGEFPNWLIENNTHLHDLSLENCSLLGPFLLPKNSHVNLSFLSISMNYFQGQIPLEI 540

Query: 359 GDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA---------- 408
           G  LP L    +S+N  +GSIP S GN+  L+ LDLSNN L G+IP ++           
Sbjct: 541 GARLPGLEVLFMSSNGFNGSIPFSLGNISSLKGLDLSNNSLQGQIPGWIGNMSSLEFLNL 600

Query: 409 ------------VGCVNLNSLALSNNNLQG----------HMFSRNFN------------ 434
                           NL  + LS N LQG           MF+ + +            
Sbjct: 601 SGNNFSGRLPPRFDTSNLRYVYLSRNKLQGPIAMTFYNSFEMFALDLSHNNLTGSIPKWI 660

Query: 435 --LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL------------ 480
             L+NL++LLL  N   GEIP  L +   L  + L++N  SG I  W+            
Sbjct: 661 DRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHFSGNILSWMISSHPFPQQYDS 720

Query: 481 ---------------GNLTR------LQY---IIMPNNHLEGPIPVEFCQLDLLQILDIS 516
                           N++       +QY   I    N+  G IP E   L ++++L++S
Sbjct: 721 NDYLSSSQQSFEFTTKNVSLSYRGSIIQYFTGIDFSCNNFIGEIPPEIGNLSMIKVLNLS 780

Query: 517 DNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEW 576
            N+++G  IP TFSNLK+IESLDLSYNKL+G++P QL+EL  LE FSVA+NNLSG+    
Sbjct: 781 HNSLTGP-IPPTFSNLKEIESLDLSYNKLDGEIPPQLIELFFLEFFSVAHNNLSGKTLAR 839

Query: 577 TAQFATFNESSYEGNIFLCGLP-LPIC---ISPATMPEASIGNEQDDNLIDMDSFFITFT 632
            AQFATF ES Y+ N FLCG P L IC   + P+ MP  S  NE D   IDM+ F++TF 
Sbjct: 840 VAQFATFEESCYKDNPFLCGEPLLKICGTTMPPSPMP-TSTNNEDDGGFIDMEVFYVTFG 898

Query: 633 TSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNL 675
            +YI+V+  I  +LY+N YWRR WF+F+E+ I +C YF+V+NL
Sbjct: 899 VAYIMVLLVISAILYINPYWRRAWFHFIEVSINNCYYFLVDNL 941

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 297/753 (39%), Positives = 396/753 (52%), Gaps = 125/753 (16%)

Query: 7   LKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLD 66
           LK   L G  + + S  LQS+G+ PSL  L L   N T              NL+YL L 
Sbjct: 251 LKELYLDGCSLDEHS--LQSLGALPSLKNLSLQELNGT----VPYGGFLYLKNLKYLDLS 304

Query: 67  ESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRG-QGFPSFKSLEHLHMSFAPIALNTS 125
            ++L+ S+ Q+I ++  SLK L +  C +NG +   QGF + K+LE+L +S     L+ +
Sbjct: 305 YNTLNNSIFQAIETM-TSLKTLKLKGCGLNGQISSTQGFLNLKNLEYLDLS--DNTLDNN 361

Query: 126 FLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLAN 185
            LQ I  +M SLK L L    L  N      QGLC L HLQEL M+DNDL G LP CLAN
Sbjct: 362 ILQSI-RAMTSLKTLGLQSCRL--NGRIPTTQGLCDLNHLQELYMSDNDLSGFLPLCLAN 418

Query: 186 MTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYAD 245
           +TSL                         + L LS NH +IP+SL P  N S+LK F   
Sbjct: 419 LTSL-------------------------QQLSLSSNHLKIPMSLSPFHNLSKLKYFDGS 453

Query: 246 NNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEF 305
            NE+ AE  +     +  FQL  L LSS       FP+FLYHQ  L ++DL++I++ GEF
Sbjct: 454 GNEIFAE--EDDRNMSSKFQLEYLYLSSRGQGAGAFPRFLYHQFSLRYLDLTNIQIKGEF 511

Query: 306 PTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365
           P+WL+ENN  L+ L L N S+ GPF LP + H  L FL +S N+F+G +P EIG  LP L
Sbjct: 512 PSWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSFLSISMNHFRGQIPSEIGAHLPGL 571

Query: 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA----------------- 408
               +S N  +GSIP S GN+  LQ LDLSNN L G+IP ++                  
Sbjct: 572 EVLFMSDNGFNGSIPFSLGNISSLQWLDLSNNILQGQIPGWIGNMSSLEFLDLSGNNFSG 631

Query: 409 ------VGCVNLNSLALSNNNLQG----------HMFSRNFN--------------LTNL 438
                     NL  + LS N LQG           +F+ + +              L+NL
Sbjct: 632 RFPPRFSTSSNLRYVYLSRNKLQGPITMTFYDLAEIFALDLSHNNLTGTIPEWIDRLSNL 691

Query: 439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL--------------- 483
           ++LLL  N   GEIP  LS+   L  + L++N LSG I  W+ +                
Sbjct: 692 RFLLLSYNNLEGEIPIQLSRLDRLTLIDLSHNHLSGNILYWMISTHSFPQLYNSRDSLSS 751

Query: 484 -----------TRLQY----------IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 522
                        L Y          I    N+  G IP E   L ++++L++S NN++G
Sbjct: 752 SQQSFEFTTKNVSLSYRGIIIWYFTGIDFSCNNFTGEIPPEIGNLSMIKVLNLSHNNLTG 811

Query: 523 RLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFAT 582
             IP TF NLK+IESLDLSYNKL+G++P +L EL +LEVF VA+NNLSG+ P   AQFAT
Sbjct: 812 P-IPPTFWNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFIVAHNNLSGKTPARVAQFAT 870

Query: 583 FNESSYEGNIFLCGLPLPICISPATMPE-ASIGNEQDDNLIDMDSFFITFTTSYIIVIFG 641
           F+ES Y+ N FLCG PL      A  P   S  NE +   +DM  F++TF  +YI+V+  
Sbjct: 871 FDESCYKDNPFLCGEPLSKICGVAMPPSPTSTNNEDNGGFMDMKVFYVTFWVAYIMVLLV 930

Query: 642 IVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNN 674
           I  VLY+N YWRR WFYF+E+ I +C YF+V+N
Sbjct: 931 IGAVLYINPYWRRGWFYFIEVSINNCYYFLVDN 963

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134609|ref|XP_002327446.1| predicted protein [Populus trichocarpa] gi|222836000|gb|EEE74421.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 286/710 (40%), Positives = 385/710 (54%), Gaps = 127/710 (17%)

Query: 54  LHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHL 113
           + N ++LE L LD  SL    LQS+ +L PSLKNL++     +G +  +GF   K+LE+L
Sbjct: 1   MQNLSSLESLYLDGCSLDEHSLQSLGAL-PSLKNLTLQ--AFSGSVPFRGFLDLKNLEYL 57

Query: 114 HMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADN 173
            +S+    LN S  Q I + M SLK L L    L     R + QGLC L HLQEL M DN
Sbjct: 58  DLSYN--TLNNSIFQAI-KMMTSLKTLILQSCKL---DGRTIAQGLCDLNHLQELSMYDN 111

Query: 174 DLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPL 233
           DL G LP CLAN+TSL+ LD                         LS NH +IP+SL PL
Sbjct: 112 DLNGFLPLCLANLTSLQQLD-------------------------LSSNHLKIPMSLSPL 146

Query: 234 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF 293
           +N S+LK F   +NE+  E    H+L+ P FQL  + LSS       FPKFLYHQ  L+ 
Sbjct: 147 YNLSKLKYFDGSDNEIYTE-EDDHNLS-PKFQLESISLSSHGQGAGAFPKFLYHQFSLQS 204

Query: 294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGH 353
           + L++I++ GEFP WL+ENN  L  L L N S+ GPF LP + H  L FL +S N FQG 
Sbjct: 205 LALTNIQIKGEFPNWLIENNTYLHDLSLENCSLLGPFLLPKNSHVNLSFLSISMNYFQGK 264

Query: 354 MPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIP--------- 404
           +P EIG  LP L    +S N  +GS+P S GN+  LQ+LDLSNN L G+IP         
Sbjct: 265 IPSEIGARLPGLEVLLMSDNGFNGSVPFSLGNISSLQLLDLSNNSLQGQIPGWIGNMSSL 324

Query: 405 EYLAVGC--------------VNLNSLALSNNNLQGHMFSRNFN---------------- 434
           E+L +                 NL  + LS N LQG +    +N                
Sbjct: 325 EFLDLSVNNFSGRLPPRFDTSSNLRYVYLSRNKLQGPIAMTFYNSSEIFALDLSHNNLTG 384

Query: 435 --------LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL------ 480
                   L+NL++LLL  N   GEIP  L +   L  + L++N LSG I  W+      
Sbjct: 385 SIPKWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHLSGNILSWMISSHPF 444

Query: 481 -----------------------------GNLTRLQY---IIMPNNHLEGPIPVEFCQLD 508
                                        GN+  +QY   I    N+  G IP E   L 
Sbjct: 445 PQEYDSYDYLSSSQQSFEFTTKNVSLSYRGNI--IQYFTGIDFSCNNFIGEIPPEIGNLS 502

Query: 509 LLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN 568
           ++++L++S N+++G  IP TFSNLK+IESLDLSYNKL+G++P QL+EL +LE FSVA+NN
Sbjct: 503 MIKVLNLSHNSLTGP-IPPTFSNLKEIESLDLSYNKLDGEIPPQLIELFSLEFFSVAHNN 561

Query: 569 LSGEIPEWTAQFATFNESSYEGNIFLCGLPLP-ICIS--PATMPEASIGNEQDDNLIDMD 625
           LSG+     AQF+TF ES Y+ N FLCG PLP +C +  P +    S  NE D   +DM+
Sbjct: 562 LSGKTLARVAQFSTFEESCYKDNPFLCGEPLPKMCGAAMPLSPTPTSTNNEDDGGFMDME 621

Query: 626 SFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNL 675
            F++TF  +YI+++  I  +LY+N YWR+ WF+F+E+ I +  YF+V +L
Sbjct: 622 VFYVTFGVAYIMMLLVIGAILYINPYWRQAWFHFIEVSINNLLYFLVGHL 671

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 287/749 (38%), Positives = 398/749 (53%), Gaps = 145/749 (19%)

Query: 24  LQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP 83
            Q +GSFP+L  L L  N+F    +    E  N ++LEYL LD SSL    LQ +A+  P
Sbjct: 214 FQFLGSFPNLTRLYLEDNDFRGRIL----EFQNLSSLEYLYLDGSSLDEHSLQGLATP-P 268

Query: 84  SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLS 143
           SL +L +   ++ GV+  +GF + K+LE+L +  +  +L+ S    IG +M SLK L L+
Sbjct: 269 SLIHLFLE--DLGGVVPSRGFLNLKNLEYLDLERS--SLDNSIFHTIG-TMTSLKILYLT 323

Query: 144 GSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSI 203
              L        D+          L M  NDL G LP CLAN+TSL+ LD          
Sbjct: 324 DCSLNGQIPTAQDK----------LHMYHNDLSGFLPPCLANLTSLQHLD---------- 363

Query: 204 SSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
                          LS NH +IP+SL PL+N S+L  F    NE+ AE  + H+L+ P 
Sbjct: 364 ---------------LSSNHLKIPVSLSPLYNLSKLNYFDGSGNEIYAE-EEDHNLS-PK 406

Query: 264 FQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN 323
           FQL  L LSS       FPKFLYHQ +L++VDL++I+M GEFP WL+ENN  L+ L L N
Sbjct: 407 FQLEFLYLSSRGQGPGAFPKFLYHQVNLQYVDLTNIQMKGEFPNWLIENNTYLQELHLEN 466

Query: 324 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSF 383
            S+ GPF LP + H  L FL +S N FQG +P EIG  LP L    +S N  +G+IPSS 
Sbjct: 467 CSLTGPFLLPKNSHVNLLFLSISVNYFQGQIPSEIGAYLPRLEVLLMSDNGFNGTIPSSL 526

Query: 384 GNMKFLQILD----------LSNNHLTGEIPEYL-------------------------- 407
           GNM  LQ+LD          LSNN L G+IP ++                          
Sbjct: 527 GNMSSLQVLDMFANVLTGRILSNNSLQGQIPGWIGNMSSLEFLDLSGNNFSGPLPPRFGT 586

Query: 408 ------------------AVGCVN---LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGN 446
                             A+   N   + +L LS+N+L G +       +NL++LLL  N
Sbjct: 587 SSKLRYVSLSRNKLHGPIAIAFYNSSKIEALDLSHNDLTGRIPEWIGRQSNLRFLLLSYN 646

Query: 447 RFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-------------------------- 480
            F GEIP  L +   L  + L++N L G I  W+                          
Sbjct: 647 NFEGEIPIQLCRLDQLTLIDLSHNYLFGNILSWMISSSPLGISNSHDSVSSSQQSFEFTT 706

Query: 481 --------GNLTR-LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSN 531
                   G++ R  + I    N+  G IP E   L  +++L++S N+++G  IP TFSN
Sbjct: 707 KNVSLSYRGDIIRYFKGIDFSRNNFTGEIPPEIGNLSGIKVLNLSHNSLTGP-IPPTFSN 765

Query: 532 LKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 591
           LK+IESLDLSYNKL+G++P +L EL  LE FSVA+NNLSG+ P   AQFATF ES Y+ N
Sbjct: 766 LKEIESLDLSYNKLDGEIPPRLTELFFLEFFSVAHNNLSGKTPTRVAQFATFEESCYKEN 825

Query: 592 IFLCGLPLP-IC---ISPATMPEASIGNEQDD-NLIDMDSFFITFTTSYIIVIFGIVIVL 646
            FLCG PLP IC   + P+  P ++  N +D+   +DM+ F++TF  +YI+V+  + +V 
Sbjct: 826 PFLCGEPLPKICGVVMPPSPTPSSTNKNNKDNCGFVDMEVFYVTFGVAYIMVLLVMGVVF 885

Query: 647 YVNSYWRRRWFYFVEMWITSCSYFVVNNL 675
           Y+N YWR+ WFYF+E+ + +C YF+++NL
Sbjct: 886 YINPYWRQAWFYFIEVSLNNCYYFIMDNL 914

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 282/760 (37%), Positives = 405/760 (53%), Gaps = 129/760 (16%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
           L  L+S  L    + + S  LQS+G+  SL  L L   N        +    +  NLEYL
Sbjct: 199 LSSLESLYLDDCSLDEHS--LQSLGALHSLKNLSLRELN----GAVPSGAFLDLKNLEYL 252

Query: 64  TLDESSLHISLLQSIASLFPSLKNLSISYCEVNG-VLRGQGFPSFKSLEHLHMSFAPIAL 122
            L   +L+ S+ Q+I ++  SLK L++  C +NG +   QGF + K+LE+L +S     L
Sbjct: 253 DLSYITLNNSIFQAIRTM-TSLKTLNLMGCSLNGQIPTTQGFLNLKNLEYLDLS--DNTL 309

Query: 123 NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWC 182
           + + LQ IG +M SLK LSLS   L  N      QGLC L HLQ L M DNDL G LP C
Sbjct: 310 DNNILQTIG-TMTSLKTLSLSSCKL--NIQIPTTQGLCDLNHLQVLYMYDNDLSGFLPPC 366

Query: 183 LANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242
           LAN+TSL+ LD+S+N                         HF+IP+SL PL+N S+LK F
Sbjct: 367 LANLTSLQRLDLSYN-------------------------HFKIPMSLRPLYNLSKLKSF 401

Query: 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMN 302
              +NE+ AE    H+L +P FQL  L LSS        PKFLYHQ +L+F+DL++I++ 
Sbjct: 402 DGSSNEIFAE-EDDHNL-SPKFQLESLYLSSIGQGARALPKFLYHQFNLQFLDLTNIQIQ 459

Query: 303 GEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDIL 362
           GEFP WL+ENN  L+ L L N S+ GPF LP + H  L  L +S N+FQG +P EIG  L
Sbjct: 460 GEFPNWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSILSISMNHFQGQIPSEIGAHL 519

Query: 363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN 422
           P L    +S N  +GSIP S GN+  LQ LDLSNN L G+IP ++     +L  L LS N
Sbjct: 520 PGLEVLFMSDNGFNGSIPFSLGNISSLQWLDLSNNILQGQIPGWIG-NMSSLEFLDLSGN 578

Query: 423 NLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 482
           N  G +  R    +NL+++ L  N+  G I  +    S +  L L++N+L+G+IP+W+  
Sbjct: 579 NFSGRLPPRFGTSSNLRYVYLSRNKLQGPIAMTFYNSSEIFALDLSHNNLTGRIPKWIDR 638

Query: 483 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL-----------IPSTFSN 531
           L+ L+++++  N+LEG IP++  +LD L ++D+S N++SG +           + ST+ +
Sbjct: 639 LSNLRFLLLSYNNLEGEIPIQLSRLDQLILIDLSHNHLSGNILSWMISTHNFPVESTYFD 698

Query: 532 LKQI------------------------ESLDLSYNKLNGKMPHQLVELKTLEVFSV--- 564
              I                        + +D S N   G++P ++  L  ++V ++   
Sbjct: 699 FLAISHQSFEFTTKNVSLSYRGDIIWYFKGIDFSCNNFTGEIPPEIGNLSMIKVLNLSHN 758

Query: 565 ---------------------------------------------AYNNLSGEIPEWTAQ 579
                                                        A+NNLSG  P   AQ
Sbjct: 759 SLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGNTPVRVAQ 818

Query: 580 FATFNESSYEGNIFLCGLPLP-IC---ISPATMPEASIGNEQDDNLIDMDSFFITFTTSY 635
           FATF E+ Y+ N FLCG PLP IC   +SP+  P  S  N+ +   +D++ F++TF  +Y
Sbjct: 819 FATFEENCYKDNPFLCGEPLPKICGAAMSPSPTP-TSTNNKDNGGFMDIEVFYVTFWVAY 877

Query: 636 IIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNL 675
           I+V+  I  VLY+N YWRR WF+F+E+ I +C YF+V+NL
Sbjct: 878 IMVLLVIGAVLYINPYWRRAWFHFIEVSINNCYYFLVDNL 917

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106948|ref|XP_002333588.1| predicted protein [Populus trichocarpa] gi|222837496|gb|EEE75875.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 277/680 (40%), Positives = 367/680 (53%), Gaps = 121/680 (17%)

Query: 84  SLKNLSISYCEVNGVLRGQ--GFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
           SL+ L +  C ++G +     GF + K+LE L +S     L+ + LQ I  +MPSLK L 
Sbjct: 3   SLRTLILQSCRIDGQIPTTQVGFFNLKNLEFLDLSSN--TLSNNILQTI-RTMPSLKTLW 59

Query: 142 LSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTG 201
           L    L  N      QGLC L HLQEL M DNDL G LP CLANMTSL            
Sbjct: 60  LQNCSL--NGQLPTTQGLCDLNHLQELYMYDNDLIGFLPPCLANMTSL------------ 105

Query: 202 SISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA 261
                        + L LS NH +IP+SL PL+N S+LK FY   NE+ AE    H+LT 
Sbjct: 106 -------------QRLYLSSNHLKIPMSLSPLYNLSKLKSFYGSGNEICAE-EDDHNLT- 150

Query: 262 PNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFL 321
           P FQL  L LS+   +   FPKFLYHQ  L+ +DL++ ++ GEFP WL+ENN  L+ L L
Sbjct: 151 PKFQLESLSLSNGGQNTRAFPKFLYHQFSLQSLDLTNFQIKGEFPNWLIENNTYLKRLSL 210

Query: 322 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS 381
            N S+ GPF LP   H  L FL +S N+FQG +P EI   LP L    +S N  +GSIPS
Sbjct: 211 ENCSLSGPFLLPKSSHVNLSFLSISMNHFQGQIPSEIRAHLPGLEVLLMSDNGFNGSIPS 270

Query: 382 SFGNMKFLQILDLSNNHLTGEIP---------EYLAVGCVNLN----------------- 415
           S GNM  +  LDLSNN L G+IP         E+L +   NL+                 
Sbjct: 271 SLGNMSLMYELDLSNNSLQGQIPGWIGNMSSLEFLDLSRNNLSGPLPPRFNTSSKLRVVY 330

Query: 416 ---------------------SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ 454
                                +L LS+N+L G +      L+NL++LLL  N   GEIP 
Sbjct: 331 LSRNKLQGPIAMAFYDSSEIFALDLSHNDLTGRIPEWIGRLSNLRFLLLSYNNLEGEIPI 390

Query: 455 SLSKCSSLEGLYLNNNSLSGKIPRWLGNL------------------------------- 483
            L +   L  + L++N LSG I  W+ +                                
Sbjct: 391 RLCRLDQLTVIDLSHNYLSGNILSWMISTHPFPFQYNSHDSMFSSQQSFEFTTKNVSLPY 450

Query: 484 --TRLQYII---MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESL 538
             + +QY+I      N+  G IP E   L  ++ L++S N+++G  IP TF NLK+IESL
Sbjct: 451 KGSIIQYLIGIDFSCNNFTGNIPPEIGNLSKIKALNLSHNSLTGP-IPPTFWNLKEIESL 509

Query: 539 DLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598
           DLSYNKL+G++P +L EL +LEVFSVA+NNLSG+ P   AQFATF+ES Y+ N FLCG P
Sbjct: 510 DLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGKTPARVAQFATFDESCYKDNPFLCGEP 569

Query: 599 LP-IC--ISPATMPEASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRR 655
           LP IC  + P +    S  NE     ++M+ F++TF  +YI+V+  I  VLY+N YWRR 
Sbjct: 570 LPKICAAVMPPSSTPTSTNNEDHGGFMNMEVFYVTFWVAYIMVLLVIGAVLYINPYWRRA 629

Query: 656 WFYFVEMWITSCSYFVVNNL 675
           WF+F+E+ I +C YF+V+NL
Sbjct: 630 WFHFIEVSINNCYYFLVDNL 649

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142717|ref|XP_002324701.1| predicted protein [Populus trichocarpa] gi|222866135|gb|EEF03266.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 298/759 (39%), Positives = 398/759 (52%), Gaps = 153/759 (20%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
           L  LK  GL G  I   SKL+ S G   SLNTL L         ITT      + N+   
Sbjct: 175 LSSLKHLGLGGNNI---SKLVASRGP-SSLNTLYLG-------NITT------YGNMS-- 215

Query: 64  TLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALN 123
                     LLQS+ + FP+L  L + + +  G   G    +  SL+ L++     +L+
Sbjct: 216 ---------QLLQSLGA-FPNLMTLFLHHNDFRGRKLGDELQNLSSLKSLYLD--QCSLD 263

Query: 124 TSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL 183
              LQ +G ++P LK LS S       SS I   GLC L +LQEL M DN+L G LP CL
Sbjct: 264 EHSLQNLG-ALPFLKNLSFSAL-----SSTIPSGGLCDLNNLQELHMYDNNLSGFLPPCL 317

Query: 184 ANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
           AN+TSL+ LD                         LS NH +IP+SL PL+N S+LK F 
Sbjct: 318 ANLTSLQHLD-------------------------LSSNHLKIPVSLSPLYNLSKLKYFD 352

Query: 244 ADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNG 303
              NE+  E    H+L+ P FQ+  L L+S       FPKFLYHQ +L+++DL++I + G
Sbjct: 353 GSGNEIFTE-EDDHNLS-PKFQIESLYLNSRGQGARAFPKFLYHQVNLQYMDLTNIHIKG 410

Query: 304 EFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILP 363
           EFP WL+ENN  L+ L L N S+ GPF LP + H  L FL +S N+FQG +P EIG  LP
Sbjct: 411 EFPNWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSFLSISKNHFQGQIPSEIGAHLP 470

Query: 364 ------------------------SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL 399
                                   SL +F++S N+L G IP   GNM  L+ LDLS N+ 
Sbjct: 471 RLEVLLMSDDGFNGSIPFSLGNISSLQAFDLSNNSLQGQIPGWIGNMSSLEFLDLSGNNF 530

Query: 400 TGEIP---------EYLAVG--------------CVNLNSLALSNNNLQGHMFSRNFNLT 436
           +G +P          YL +                V + +L LS+NNL G +      L+
Sbjct: 531 SGRLPLRFDTSSNLRYLYLSRNKLQGPIAMIFYNSVEIFALDLSHNNLTGTIPEWIGRLS 590

Query: 437 NLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL------------- 483
           NL++LLL  N   GEIP  LSK   L  + L++N LSG I  W+ +              
Sbjct: 591 NLRFLLLSYNNLEGEIPIQLSKLDQLTLIDLSHNHLSGNILSWMISTHPFPRQYYSNDYV 650

Query: 484 --------------------TRLQY---IIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 520
                               + +QY   I    N+  G IP E   L  ++ L++S N++
Sbjct: 651 SSSQQSLEFTTKNVSLYYIGSIIQYFTGIDFSCNNFTGEIPFEIGNLIKIKALNLSHNSL 710

Query: 521 SGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 580
           +G  IP TFSNLK+IESLDLSYNKL+G++P +L EL +LEVFSVA+NNLSG+ P   AQF
Sbjct: 711 TGP-IPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGKTPTRVAQF 769

Query: 581 ATFNESSYEGNIFLCGLPLPICISPATMPEA----SIGNEQDDNLIDMDSFFITFTTSYI 636
           ATF+E  Y+ N FLCG PL + I  A MP +    S  NE +   IDM+ F++TF   YI
Sbjct: 770 ATFDEKCYKDNPFLCGEPL-LKICGAAMPPSPSPTSTNNEDNGGFIDMEVFYVTFWVEYI 828

Query: 637 IVIFGIVIVLYVNSYWRRRWFYFVEMWITSCSYFVVNNL 675
           +V+  I  VLY+N YWRR WFYF+E+ I +C YF+V+NL
Sbjct: 829 MVLIVIGAVLYINPYWRRAWFYFIEVSINNCYYFLVDNL 867

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	682
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.856	0.539	0.333	2e-69
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.846	0.597	0.328	5.6e-68
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.831	0.567	0.331	3.4e-64
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.868	0.651	0.317	3.5e-61
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.774	0.592	0.329	9.8e-61
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.837	0.585	0.314	1.2e-57
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.824	0.601	0.306	2.8e-52
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.804	0.438	0.310	3.9e-50
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.895	0.489	0.285	6.3e-47
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.803	0.482	0.291	2.8e-46

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 2.0e-69, P = 2.0e-69
 Identities = 207/620 (33%), Positives = 309/620 (49%)

Query:     5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLT 64
             R L+   LS  G+ D S+   S+ S   L TLDL++N  +D +    + L +   L+ L 
Sbjct:   184 RDLEVLDLSFNGVND-SEASHSL-STAKLKTLDLNFNPLSDFS--QLKGLESLQELQVLK 239

Query:    65 LDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT 124
             L  +  + +L   +      L+ L +S      +  G+     +S +          + T
Sbjct:   240 LRGNKFNHTLSTHVLKDLKMLQELDLSDNGFTNLDHGRDVDESRSEKRFDFREVVQKVET 299

Query:   125 SFLQI---IGESMPSLKYLSLSGS-ILGTN---SSRILD----Q---------GLCSLVH 164
              ++ +      S+   K +++ G+  LG     S ++LD    Q         G+C L+ 
Sbjct:   300 LWIGLRLSFQMSITHHKSVTVGGNGFLGLEIPTSLQVLDFKRNQLSLTHEGYLGICRLMK 359

Query:   165 LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSI-EMLILSDNH 223
             L+EL ++ N L  SLP+CL N+T LR LD+S NQL G++SS  +  L S+ E L L DN+
Sbjct:   360 LRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEYLSLLDNN 417

Query:   224 FQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSS-SYGDGFIFP 282
             F        L N +RL +F   ++++     Q+ S  AP FQL  L LS+ S G   +  
Sbjct:   418 FDGSFLFNSLVNQTRLTVFKL-SSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGSTML-- 474

Query:   283 KFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRF 342
              FL HQ DL FVDLSH K+ G FPTWL++NN +L+T+ L  +S+    +LPI  H  L+ 
Sbjct:   475 GFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQV 532

Query:   343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE 402
             LD+S+N     +  +IG + P+L   N S+N   G+IPSS G MK LQ+LD+S+N L G+
Sbjct:   533 LDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQ 592

Query:   403 IPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSL 462
             +P     GC             QG +FS++ NLT L  L L+GN F G + + L K  +L
Sbjct:   593 LPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNL 652

Query:   463 EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISG 522
               L +++N  SG +P W+G ++RL Y+ M  N L+GP P              S N+ SG
Sbjct:   653 TLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSG 711

Query:   523 RLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFAT 582
               IP    N   +  L L  N+  G +P  L +   LEV  +  NN SG+I     Q + 
Sbjct:   712 S-IPRNV-NFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSK 769

Query:   583 FNESSYEGNIFLCGLPLPIC 602
                     N F   +P  IC
Sbjct:   770 LRILLLRNNSFQTYIPGKIC 789

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 200/608 (32%), Positives = 300/608 (49%)

Query:     9 SFGLSGVGIRDGSKL-LQSMGSFPSLNTLDLSYNNFTDIA--ITTTQELHNFTNLEYLTL 65
             SFG  G+ ++D S L L  +  F  + +L+LS +  + +   +   + L     LE L L
Sbjct:    82 SFG--GLSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDL 139

Query:    66 DESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTS 125
               +  + S+   +++   SL  L +    ++G    +      +LE L +S      N S
Sbjct:   140 ASNKFNNSIFHFLSAA-TSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRN--RFNGS 196

Query:   126 F-LQIIGESMPSLKYLSLSGS-------ILGTNSSRIL---DQGLCSLVHLQELRMADND 174
               +Q +  S+  LK L LSG+       + G   + +L     G+C L ++QEL ++ N 
Sbjct:   197 IPIQELS-SLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNK 255

Query:   175 LRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLF 234
             L G LP CL ++T LR+LD+S N+LTG++ SS L  L S+E L L DN F+   S   L 
Sbjct:   256 LVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLSLFDNDFEGSFSFGSLA 314

Query:   235 NHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFV 294
             N S L +    +   + ++  S S   P FQL+ + L S   +    P FL HQ DL  V
Sbjct:   315 NLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRSCNMEKV--PHFLLHQKDLRHV 371

Query:   295 DLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHM 354
             DLS   ++G+ P+WLL NN KL+ L L N+     F++P   H  L FLDVS N+F    
Sbjct:   372 DLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTS-FQIPKSAHNLL-FLDVSANDFNHLF 429

Query:   355 PVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXX 414
             P  IG I P L   N S N    ++PSS GNM  +Q +DLS N   G +P     GC   
Sbjct:   430 PENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSM 489

Query:   415 XXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG 474
                        G +F  + N TN+  L ++ N F G+I Q L    +LE L ++NN+L+G
Sbjct:   490 AILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTG 549

Query:   475 KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQ 534
              IP W+G L  L  +++ +N L+G IP+             S N++SG +IP    +   
Sbjct:   550 VIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSG-VIPPQHDSRNG 608

Query:   535 IESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFL 594
             +  L L  NKL+G +P  L  L  +E+  +  N  SG+IPE+       +     GN F 
Sbjct:   609 VVLL-LQDNKLSGTIPDTL--LANVEILDLRNNRFSGKIPEFI-NIQNISILLLRGNNFT 664

Query:   595 CGLPLPIC 602
               +P  +C
Sbjct:   665 GQIPHQLC 672

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 3.4e-64, P = 3.4e-64
 Identities = 195/588 (33%), Positives = 285/588 (48%)

Query:    23 LLQSMGSFPSLNTLDLSYNNFT-DIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASL 81
             L++      +L  LDL  N F   I       L  F  LE L L ++  +  +   + S 
Sbjct:   113 LVKEFKDLTNLEHLDLRGNRFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSA 172

Query:    82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMS---F-APIALNTSF-LQIIGESMPS 136
               SLK+LS+    + G    +      ++E L +S   F   I +   F L+ +     S
Sbjct:   173 -TSLKSLSLWGNNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLS 231

Query:   137 LKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSF 196
                 S S  + G  +      G C   +++EL++++N L G  P CL ++T LR+LD+S 
Sbjct:   232 DNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSS 291

Query:   197 NQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQS 256
             NQLTG++ S+ L +L S+E L L  N+F+   SL  L N S+LK+   D+   + E+ + 
Sbjct:   292 NQLTGNVPSA-LANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEV-EF 349

Query:   257 HSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKL 316
              +   P FQL  + L S   +    P FL HQ DL  VDLS  +++G FP+WLLENN KL
Sbjct:   350 ETSWKPKFQLVVIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKL 407

Query:   317 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVE-IGDILPSLFSFNISTNAL 375
             E L L N+S    F+LP   H  L FL+VS N F  H+ ++  G ILP L   N++ N  
Sbjct:   408 EVLLLQNNSFTS-FQLPKSAHNLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGF 464

Query:   376 HGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNL 435
              G++PSS  NMK ++ LDLS+N   G++P     GC              G +F    N 
Sbjct:   465 QGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANF 524

Query:   436 TNLKWLL-LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN 494
             T L W++ ++ N F G I +      SL  L ++NN L+G IP W+G    L  + + NN
Sbjct:   525 TRL-WVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNN 583

Query:   495 HLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLV 554
              LEG IP              S N +SG  IP   S++     L L  N L+G +P  L+
Sbjct:   584 MLEGEIPTSLFNISYLQLLDLSSNRLSGD-IPPHVSSIYHGAVLLLQNNNLSGVIPDTLL 642

Query:   555 ELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
              L  + V  +  N LSG +PE+       +     GN F   +P   C
Sbjct:   643 -LNVI-VLDLRNNRLSGNLPEFI-NTQNISILLLRGNNFTGQIPHQFC 687

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 3.5e-61, P = 3.5e-61
 Identities = 197/620 (31%), Positives = 293/620 (47%)

Query:    24 LQSMGSFPSLNTLDLSYNNFTDIA--ITTTQELHNFTNLEYLTLDESSLHISLLQSIASL 81
             L  +  F  + +LDLS +    +   +   + L    NL+ L    +  + S+   + + 
Sbjct:    85 LSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAA 144

Query:    82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
               SL  LS+    + G +  +   +  +LE L +S   I  +    +     +  LK L 
Sbjct:   145 -TSLTTLSLRRNNMYGPIPLKELKNLTNLELLDLSGNRIDGSMPVREF--PYLKKLKALD 201

Query:   142 LSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTG 201
             LS +  G  SS    Q  C + +LQEL +   +  G LP C  N+  LR LD+S NQLTG
Sbjct:   202 LSSN--GIYSSMEW-QVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTG 258

Query:   202 SISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA 261
             +I  S    L S+E L LSDN F+   SL PL N ++LK+F   + +   ++ +  S   
Sbjct:   259 NIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQV-KIESTWQ 316

Query:   262 PNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFL 321
             P FQL+ L+L     +    P FL +Q +L  VDLS  +++G  PTWLLENN +LE L L
Sbjct:   317 PLFQLSVLVLRLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQL 374

Query:   322 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS 381
              N+S    F++P   H  L+ LD S NN  G  P   G +LP+L   N S N   G+ PS
Sbjct:   375 KNNSFT-IFQMPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPS 432

Query:   382 SFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWL 441
             S G M  +  LDLS N+L+GE+P+     C              GH   R  N T+L  L
Sbjct:   433 SMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVL 492

Query:   442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP 501
              +  N F G+I   L     L  L ++NN L G++P  L     L ++ +  N L G +P
Sbjct:   493 RINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP 552

Query:   502 VEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEV 561
                            +NN +G  IP TF  L  I+ LDL  NKL+G +P Q V+ + +  
Sbjct:   553 SHV---SLDNVLFLHNNNFTGP-IPDTF--LGSIQILDLRNNKLSGNIP-QFVDTQDISF 605

Query:   562 FSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNL 621
               +  N+L+G IP    +F+         N  L G  +P C +  +   A    E+  N 
Sbjct:   606 LLLRGNSLTGYIPSTLCEFSKMRLLDLSDNK-LNGF-IPSCFNNLSFGLAR--KEEITNY 661

Query:   622 ---IDMDSFFITFTTSYIIV 638
                + ++SF++ F  S  +V
Sbjct:   662 YVAVALESFYLGFYKSTFVV 681

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 9.8e-61, P = 9.8e-61
 Identities = 181/550 (32%), Positives = 274/550 (49%)

Query:    54 LHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHL 113
             L +  NLE L L  +    S+L  +     SLK L +      G    Q   +  SLE L
Sbjct:    75 LGSLRNLETLDLGVNFYDTSVLPYLNEAV-SLKTLILHDNLFKGGFPVQELINLTSLEVL 133

Query:   114 HMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADN 173
              + F   +      ++   ++ +L+ L LS +     S  +  QG+C L  LQELR++ N
Sbjct:   134 DLKFNKFSGQLPTQELT--NLRNLRALDLSNNKF---SGSLQKQGICRLEQLQELRLSRN 188

Query:   174 DLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPL 233
                G +P C +  + LR+LD+S N L+G I    +    S+E L L DN F+   SL  +
Sbjct:   189 RFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-ISDFKSMEYLSLLDNDFEGLFSLGLI 247

Query:   234 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF 293
                + LK+F   +     +I +++       QL+ ++LS     G I P FL++Q +L  
Sbjct:   248 TELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHC-NLGKI-PGFLWYQQELRV 305

Query:   294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGH 353
             +DLS+  ++G FPTWLLENN +L+ L L N+S      LP    RRL+ LD+S NNF   
Sbjct:   306 IDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLP-RTMRRLQILDLSVNNFNNQ 363

Query:   354 MPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVX 413
             +P ++G IL SL   N+S N   G++PSS   M+ ++ +DLS N+ +G++P  L  GC  
Sbjct:   364 LPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYS 423

Query:   414 XXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473
                         G +  ++ + T+L  L+++ N F G+IP++L     L  + L+NN L+
Sbjct:   424 LSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLT 483

Query:   474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLK 533
             G IPRWLGN   L+ + + NN L+G IP              S N +SG L   + S+  
Sbjct:   484 GTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYG 542

Query:   534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTA----QFATFNESSYE 589
              I  LDL  N L G +P  L     L +  +  N LSG IP + +          E++  
Sbjct:   543 YI--LDLHNNNLTGSIPDTL--WYGLRLLDLRNNKLSGNIPLFRSTPSISVVLLRENNLT 598

Query:   590 GNI--FLCGL 597
             G I   LCGL
Sbjct:   599 GKIPVELCGL 608

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 1.2e-57, P = 1.2e-57
 Identities = 192/610 (31%), Positives = 294/610 (48%)

Query:     6 KLKSFGLSGV------GIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTN 59
             +L+S  LSG       G+ D  +  +S+    +L  LDLS N+F +        L+  T+
Sbjct:   107 ELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPF---LNAATS 163

Query:    60 LEYLTLDESSLHISL-LQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFA 118
             L  L +  + +   L ++ + +L   L+ L +S    NG +     P F  LE L     
Sbjct:   164 LTTLFIQSNYIGGPLPIKELKNL-TKLELLDLSRSGYNGSI-----PEFTHLEKLKA--L 215

Query:   119 PIALNTSFLQIIG-ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG 177
              ++ N  F  ++  + +  L  L + G         I  +  C + +L++L +  N   G
Sbjct:   216 DLSAN-DFSSLVELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEG 274

Query:   178 SLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHS 237
              LP CL N+  LR+LD+S NQL+G++ +S    L S+E L LSDN+F+   SL PL N +
Sbjct:   275 QLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANLT 333

Query:   238 RLKIF-YADNNELNAEITQSHSLTAPNFQLNRLLLS-SSYGDGFIFPKFLYHQHDLEFVD 295
             +LK+F  +  +E+    T+S+ L  P FQL    L   S G     P FL +Q +L  VD
Sbjct:   334 KLKVFRLSSTSEMLQVETESNWL--PKFQLTVAALPFCSLGK---IPNFLVYQTNLRLVD 388

Query:   296 LSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMP 355
             LS  +++G+ PTWLLENN +L+ L L N+S    F++P   H+ L+ LD S N+  G +P
Sbjct:   389 LSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITGVLP 446

Query:   356 VEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXX 415
               IG +LP L   N S N   G++PSS G M  +  LDLS N+ +GE+P  L  GC    
Sbjct:   447 DNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLI 506

Query:   416 XXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGK 475
                       G +      LT+L  L +  N F GEI   L    +L     +NN L+G 
Sbjct:   507 TLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGL 566

Query:   476 IPRWLG-NLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQ 534
             I   +  + + L  +++ NN LEG +P              S N +SG L  S  +++  
Sbjct:   567 ISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYG 626

Query:   535 IESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEW--TAQFATFNESSYEGNI 592
             I+ + L  N   G +P  L+E     +  +  N LSG IP++  T +  T       GN 
Sbjct:   627 IK-IFLHNNSFTGPLPVTLLE--NAYILDLRNNKLSGSIPQFVNTGKMITL---LLRGNN 680

Query:   593 FLCGLPLPIC 602
                 +P  +C
Sbjct:   681 LTGSIPRKLC 690

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 2.8e-52, P = 2.8e-52
 Identities = 182/594 (30%), Positives = 267/594 (44%)

Query:    18 RDGSKL-LQSMGSFPSLNTLDLS---YNNFTDIA--ITTTQELHNFTNLEYLTLDESSLH 71
             ++ S L L  +  F  + +L+LS   YN F      +   + L    NL+ + L  +  +
Sbjct:    78 KESSPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSGLRNLKIMDLSTNYFN 137

Query:    72 ISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIG 131
              S    + +   SL  L ++Y E++G    +G     +LE L +      LN S  ++I 
Sbjct:   138 YSTFPFLNAA-TSLTTLILTYNEMDGPFPIKGLKDLTNLELLDLRANK--LNGSMQELI- 193

Query:   132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW-CLANMTSLR 190
               +  LK L LS +    +SS  L Q L +L++L+ L +A N + G +P      + +LR
Sbjct:   194 -HLKKLKALDLSSNKF--SSSMEL-QELQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLR 249

Query:   191 ILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ--IPISLEPLFNHSRLKIFYADNNE 248
              LD+  N   G I    L  L  + +L LS N     +P S   L +   L +  +DNN 
Sbjct:   250 DLDLKGNHFVGQIPLC-LGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSL--SDNN- 305

Query:   249 LNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTW 308
              +   + +      N +   +L   S       P FL +Q  L  VDLS   ++G  PTW
Sbjct:   306 FDGSFSLNPLTNLTNLKFVVVLRFCSLEK---IPSFLLYQKKLRLVDLSSNNLSGNIPTW 362

Query:   309 LLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF 368
             LL NN +LE L L N+S    F +P   H  L+  D S NN  G  P ++   LP+L   
Sbjct:   363 LLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRL 419

Query:   369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHM 428
             N S N   G  P+S G MK +  LDLS N+ +G++P     GCV             G  
Sbjct:   420 NGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRF 479

Query:   429 FSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQY 488
               R  N  +L  L ++ N F G I   LS  + L  L ++NN LSG IPRWL     L Y
Sbjct:   480 LPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDY 539

Query:   489 IIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK 548
             +++ NN LEG IP              S N  SG L PS   +   I    L  N   G 
Sbjct:   540 VLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGAL-PSHVDSELGIYMF-LHNNNFTGP 597

Query:   549 MPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
             +P  L  LK++++  +  N LSG IP++     + N    +GN     +P  +C
Sbjct:   598 IPDTL--LKSVQILDLRNNKLSGSIPQFD-DTQSINILLLKGNNLTGSIPRELC 648

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 3.9e-50, P = 3.9e-50
 Identities = 184/593 (31%), Positives = 286/593 (48%)

Query:    32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
             +L TLDLS NN T +     +E      LE+L L ++ L  SL ++I S   SLK L +S
Sbjct:   289 NLQTLDLSSNNLTGVI---HEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLS 345

Query:    92 YCEVNGVLRGQGFPSFKSLEHLHMSFAPIA--LNTSFLQIIGESMPSLKYLSLSGSILGT 149
               +++G +  +   + +SL+ L +S   +   +  S  Q++  +   L   SL G+ L +
Sbjct:   346 ETQLSGEIPAE-ISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGT-LSS 403

Query:   150 NSSRILDQGLCSLVH----------------LQELRMADNDLRGSLPWCLANMTSLRILD 193
             + S + +    +L H                L+ + + +N   G +P  + N T L+ +D
Sbjct:   404 SISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEID 463

Query:   194 VSFNQLTGSISSSPLVHLTSIEMLILSDNHF--QIPISLEPLFNHSRLKIFYADNNELNA 251
                N+L+G I SS +  L  +  L L +N     IP SL     H    I  ADN +L+ 
Sbjct:   464 WYGNRLSGEIPSS-IGRLKDLTRLHLRENELVGNIPASLGNC--HQMTVIDLADN-QLSG 519

Query:   252 EITQSHS-LTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLL 310
              I  S   LTA   +L  +  +S  G+    P  L +  +L  ++ S  K NG     L 
Sbjct:   520 SIPSSFGFLTA--LELFMIYNNSLQGN---LPDSLINLKNLTRINFSSNKFNGSISP-LC 573

Query:   311 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI 370
              +++ L +  +  +   G   L +     L  L +  N F G +P   G I   L   +I
Sbjct:   574 GSSSYL-SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKI-SELSLLDI 631

Query:   371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFS 430
             S N+L G IP   G  K L  +DL+NN+L+G IP +L                  G + +
Sbjct:   632 SRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK-LPLLGELKLSSNKFVGSLPT 690

Query:   431 RNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII 490
               F+LTN+  L L+GN   G IPQ +    +L  L L  N LSG +P  +G L++L  + 
Sbjct:   691 EIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELR 750

Query:   491 MPNNHLEGPIPVEFCXXXXXXXXXX-SDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM 549
             +  N L G IPVE             S NN +GR IPST S L ++ESLDLS+N+L G++
Sbjct:   751 LSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGR-IPSTISTLPKLESLDLSHNQLVGEV 809

Query:   550 PHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
             P Q+ ++K+L   +++YNNL G++ +   QF+ +   ++ GN  LCG PL  C
Sbjct:   810 PGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHC 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 6.3e-47, P = 6.3e-47
 Identities = 191/669 (28%), Positives = 316/669 (47%)

Query:    25 QSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS 84
             +S+    +L TLDLS NN T       +E  N + L  L L  + L  SL +SI S   +
Sbjct:   281 KSLADLGNLQTLDLSANNLTG---EIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTN 337

Query:    85 LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG 144
             L+ L +S  +++G +  +     +SL+ L +S      N S    I E++  L  + L+ 
Sbjct:   338 LEQLVLSGTQLSGEIPVE-LSKCQSLKQLDLS------NNSLAGSIPEALFEL--VELTD 388

Query:   145 SILGTNSSR-ILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSI 203
               L  N+    L   + +L +LQ L +  N+L G LP  ++ +  L +L +  N+ +G I
Sbjct:   389 LYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEI 448

Query:   204 SSSPLVHLTSIEMLILSDNHFQ--IPISLEPLFNHSRLKIFYADNNEL----NAEITQSH 257
                 + + TS++M+ +  NHF+  IP S+  L     L + +   NEL     A +   H
Sbjct:   449 PQE-IGNCTSLKMIDMFGNHFEGEIPPSIGRL---KELNLLHLRQNELVGGLPASLGNCH 504

Query:   258 SLTAPNFQLNRLL--LSSSYG--DGF----IF--------PKFLYHQHDLEFVDLSHIKM 301
              L   +   N+L   + SS+G   G     ++        P  L    +L  ++LSH ++
Sbjct:   505 QLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRL 564

Query:   302 NGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI 361
             NG     L  +++ L +  + N+       L +   + L  L +  N   G +P  +G I
Sbjct:   565 NGTIHP-LCGSSSYL-SFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKI 622

Query:   362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXX 421
                L   ++S+NAL G+IP      K L  +DL+NN L+G IP +L              
Sbjct:   623 R-ELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSN 681

Query:   422 XXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 481
                +  + +  FN T L  L L+GN   G IPQ +    +L  L L+ N  SG +P+ +G
Sbjct:   682 QFVES-LPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMG 740

Query:   482 NLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXX-SDNNISGRLIPSTFSNLKQIESLDL 540
              L++L  + +  N L G IPVE             S NN +G  IPST   L ++E+LDL
Sbjct:   741 KLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGD-IPSTIGTLSKLETLDL 799

Query:   541 SYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP 600
             S+N+L G++P  + ++K+L   +V++NNL G++ +   QF+ +   S+ GN  LCG PL 
Sbjct:   800 SHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK---QFSRWPADSFLGNTGLCGSPLS 856

Query:   601 ICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRRWFYFV 660
              C            N+Q    +   S  I    S +  I G++I L +  ++++R  +F 
Sbjct:   857 RC------NRVRSNNKQQG--LSARSVVIISAISALTAI-GLMI-LVIALFFKQRHDFFK 906

Query:   661 EMWITSCSY 669
             ++   S +Y
Sbjct:   907 KVGHGSTAY 915

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.8e-46, P = 2.8e-46
 Identities = 170/583 (29%), Positives = 265/583 (45%)

Query:    28 GSFPS----LNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP 83
             G  PS    L  L L   ++  +       L N  +L+YL LD + L  +L  +I++   
Sbjct:   176 GQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNC-S 234

Query:    84 SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLS 143
             SL +LS S  E+ GV+    + +   LE L +S      N +F   +  S+      SL+
Sbjct:   235 SLVHLSASENEIGGVIPA-AYGALPKLEVLSLS------NNNFSGTVPFSL--FCNTSLT 285

Query:   144 GSILGTNS-SRILDQGLCSLVH--LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLT 200
                LG N+ S I+     +     LQ L + +N + G  P  L N+ SL+ LDVS N  +
Sbjct:   286 IVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFS 345

Query:   201 GSISSSPLVHLTSIEMLILSDNHF--QIPISLEPLFNHSRLKIFYADNNELNAEITQSHS 258
             G I    + +L  +E L L++N    +IP+ ++       L +   + N L  +I +   
Sbjct:   346 GEIPPD-IGNLKRLEELKLANNSLTGEIPVEIKQC---GSLDVLDFEGNSLKGQIPEFLG 401

Query:   259 LTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLET 318
                    L  L L  +   G++ P  + +   LE ++L    +NG FP  L+   + L  
Sbjct:   402 YMKA---LKVLSLGRNSFSGYV-PSSMVNLQQLERLNLGENNLNGSFPVELMALTS-LSE 456

Query:   319 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS 378
             L L  +   G   + I     L FL++S N F G +P  +G++   L + ++S   + G 
Sbjct:   457 LDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLF-KLTALDLSKQNMSGE 515

Query:   379 IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFN-LTN 437
             +P     +  +Q++ L  N+ +G +PE  +   V             G +  + F  L  
Sbjct:   516 VPVELSGLPNVQVIALQGNNFSGVVPEGFS-SLVSLRYVNLSSNSFSGEI-PQTFGFLRL 573

Query:   438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497
             L  L L  N   G IP  +  CS+LE L L +N L G IP  L  L RL+ + +  N+L 
Sbjct:   574 LVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLS 633

Query:   498 GPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK 557
             G IP E              N++SG +IP +FS L  +  +DLS N L G++P  L  + 
Sbjct:   634 GEIPPEISQSSSLNSLSLDHNHLSG-VIPGSFSGLSNLTKMDLSVNNLTGEIPASLALIS 692

Query:   558 T-LEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPL 599
             + L  F+V+ NNL GEIP         N S + GN  LCG PL
Sbjct:   693 SNLVYFNVSSNNLKGEIPASLGSRIN-NTSEFSGNTELCGKPL 734

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.11450001 hypothetical protein (577 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	682
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-43
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-36
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  166 bits (422), Expect = 6e-43
 Identities = 166/579 (28%), Positives = 261/579 (45%), Gaps = 128/579 (22%)

Query: 22  KLLQSMGSFPSLNTLDLSYNNFT-DIAITTTQELHNFTNLEYLTLDESSLHISLLQSIAS 80
           ++   +GSF SL  LDL  N     I  + T    N T+LE+LTL  + L   + + +  
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT----NLTSLEFLTLASNQLVGQIPRELGQ 210

Query: 81  LFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYL 140
           +  SLK + + Y  ++G +  +      SL HL                       L Y 
Sbjct: 211 M-KSLKWIYLGYNNLSGEIPYE-IGGLTSLNHL----------------------DLVYN 246

Query: 141 SLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLT 200
           +L+G I            L +L +LQ L +  N L G +P  + ++  L  LD+S N L+
Sbjct: 247 NLTGPI---------PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 201 GSISSSPLVHLTSIEMLILSDNHF--QIPISLEPLFNHSRLKIFYADNNELNAEITQSHS 258
           G I    ++ L ++E+L L  N+F  +IP++L  L    RL++    +N+ + EI     
Sbjct: 298 GEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSL---PRLQVLQLWSNKFSGEI----- 348

Query: 259 LTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLET 318
                                  PK L   ++L  +DLS   + GE P  L  +      
Sbjct: 349 -----------------------PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS------ 379

Query: 319 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS 378
                                            G+           LF   + +N+L G 
Sbjct: 380 ---------------------------------GN-----------LFKLILFSNSLEGE 395

Query: 379 IPSSFGNMKFLQILDLSNNHLTGEIP-EYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTN 437
           IP S G  + L+ + L +N  +GE+P E+  +  V    L +SNNNLQG + SR +++ +
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF--LDISNNNLQGRINSRKWDMPS 453

Query: 438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497
           L+ L L  N+F G +P S      LE L L+ N  SG +PR LG+L+ L  + +  N L 
Sbjct: 454 LQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Query: 498 GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK 557
           G IP E      L  LD+S N +SG+ IP++FS +  +  LDLS N+L+G++P  L  ++
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQ-IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571

Query: 558 TLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCG 596
           +L   ++++N+L G +P  T  F   N S+  GNI LCG
Sbjct: 572 SLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (407), Expect = 5e-41
 Identities = 98/246 (39%), Positives = 148/246 (60%), Gaps = 9/246 (3%)

Query: 330 FRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFL 389
           FRLP      ++ +++SNN   G +P +I     SL   N+S N   GSIP   G++  L
Sbjct: 90  FRLPY-----IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFV 449
           + LDLSNN L+GEIP  +     +L  L L  N L G + +   NLT+L++L L  N+ V
Sbjct: 143 ETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201

Query: 450 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL 509
           G+IP+ L +  SL+ +YL  N+LSG+IP  +G LT L ++ +  N+L GPIP     L  
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 510 LQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569
           LQ L +  N +SG + PS F +L+++ SLDLS N L+G++P  +++L+ LE+  +  NN 
Sbjct: 262 LQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Query: 570 SGEIPE 575
           +G+IP 
Sbjct: 321 TGKIPV 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  154 bits (391), Expect = 4e-39
 Identities = 145/470 (30%), Positives = 222/470 (47%), Gaps = 89/470 (18%)

Query: 130 IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSL 189
           I  +  SL+YL+LS +    N +  + +G  S+ +L+ L +++N L G +P  + + +SL
Sbjct: 113 IFTTSSSLRYLNLSNN----NFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 190 RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF--QIPISLEPLFNHSRLKIFYADNN 247
           ++LD+  N L G I +S L +LTS+E L L+ N    QIP  L  + +   LK  Y   N
Sbjct: 167 KVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYN 222

Query: 248 ELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPT 307
            L+ EI                            P  +     L  +DL +  + G  P+
Sbjct: 223 NLSGEI----------------------------PYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 308 WLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS 367
             L N   L+ LFL  + + GP    I   ++L  LD+S+N+  G +P E+   L +L  
Sbjct: 255 -SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEI 312

Query: 368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH 427
            ++ +N   G IP +  ++  LQ+L L +N  +GEIP+ L     NL  L LS NNL G 
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGE 371

Query: 428 MFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 487
           +     +  NL  L+L  N   GEIP+SL  C SL  + L +NS SG++P          
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--------- 422

Query: 488 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL------IPS-------------- 527
                          EF +L L+  LDIS+NN+ GR+      +PS              
Sbjct: 423 ---------------EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Query: 528 --TFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
                  K++E+LDLS N+ +G +P +L  L  L    ++ N LSGEIP+
Sbjct: 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  151 bits (382), Expect = 7e-38
 Identities = 109/322 (33%), Positives = 158/322 (49%), Gaps = 9/322 (2%)

Query: 256 SHSLTAPNFQLNRLL---LSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLEN 312
           S  +++  F+L  +    LS++   G I          L +++LS+    G  P   + N
Sbjct: 82  SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141

Query: 313 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIST 372
              LETL L N+ + G     I     L+ LD+  N   G +P  + + L SL    +++
Sbjct: 142 ---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLAS 197

Query: 373 NALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRN 432
           N L G IP   G MK L+ + L  N+L+GEIP  +  G  +LN L L  NNL G + S  
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSL 256

Query: 433 FNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMP 492
            NL NL++L L  N+  G IP S+     L  L L++NSLSG+IP  +  L  L+ + + 
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316

Query: 493 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQ 552
           +N+  G IPV    L  LQ+L +  N  SG  IP        +  LDLS N L G++P  
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGE-IPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 553 LVELKTLEVFSVAYNNLSGEIP 574
           L     L    +  N+L GEIP
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  145 bits (368), Expect = 3e-36
 Identities = 103/268 (38%), Positives = 145/268 (54%), Gaps = 6/268 (2%)

Query: 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMKFLQILDLSNN 397
           R+  +D+S  N  G +   I   LP + + N+S N L G IP   F     L+ L+LSNN
Sbjct: 70  RVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 398 HLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS 457
           + TG IP        NL +L LSNN L G + +   + ++LK L L GN  VG+IP SL+
Sbjct: 129 NFTGSIPRGSIP---NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 458 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 517
             +SLE L L +N L G+IPR LG +  L++I +  N+L G IP E   L  L  LD+  
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWT 577
           NN++G  IPS+  NLK ++ L L  NKL+G +P  +  L+ L    ++ N+LSGEIPE  
Sbjct: 246 NNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304

Query: 578 AQFATFNESSYEGNIFLCGLPLPICISP 605
            Q           N F   +P+ +   P
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLP 332

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 28/168 (16%)

Query: 493 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQ 552
           N  L G IP +  +L  LQ +++S N+I G  IP +  ++  +E LDLSYN  NG +P  
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 553 LVELKTLEVFSVAYNNLSGEIPEWTA----QFATFNESSYEGNIFLCGLP-LPICISPAT 607
           L +L +L + ++  N+LSG +P          A+FN   +  N  LCG+P L  C  P  
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRAC-GPHL 541

Query: 608 MPEASIGNEQDDNLIDMDSFFITFTTSYIIVIFGIVIVLYVNSYWRRR 655
              A IG              I F  S       + +V+    +W+RR
Sbjct: 542 SVGAKIG--------------IAFGVSVAF----LFLVICAMCWWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 6e-12
 Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 26/114 (22%)

Query: 343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE 402
           L + N   +G +P +I   L  L S N+S N++ G+IP S G++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 403 IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSL 456
           IPE L                           LT+L+ L L GN   G +P +L
Sbjct: 482 IPESLG-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 4/96 (4%)

Query: 433 FNLTNLKWLL----LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQY 488
           F+ T  KW +    L+     G IP  +SK   L+ + L+ NS+ G IP  LG++T L+ 
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 489 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL 524
           + +  N   G IP    QL  L+IL+++ N++SGR+
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNN 397
           R L+ +++S N+ +G++P  +G I  SL   ++S N+ +GSIP S G +  L+IL+L+ N
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 398 HLTGEIP 404
            L+G +P
Sbjct: 501 SLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 4e-09
 Identities = 34/88 (38%), Positives = 49/88 (55%)

Query: 414 LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473
           ++ L L N  L+G + +    L +L+ + L GN   G IP SL   +SLE L L+ NS +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 474 GKIPRWLGNLTRLQYIIMPNNHLEGPIP 501
           G IP  LG LT L+ + +  N L G +P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 162 LVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSD 221
           L HLQ + ++ N +RG++P  L ++TSL +LD+S+N   GSI  S L  LTS+ +L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 222 NHF--QIPISL 230
           N    ++P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 13/240 (5%)

Query: 312 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIS 371
            N        +N +        +     L  LD+ NNN    +P  IG +  +L   ++S
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLS 148

Query: 372 TNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSR 431
            N +  S+PS   N+  L+ LDLS N L+ ++P  L     NLN+L LS N +       
Sbjct: 149 DNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLP-KLLSNLSNLNNLDLSGNKIS--DLPP 203

Query: 432 NFN-LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII 490
               L+ L+ L L  N  + E+  SLS   +L GL L+NN L   +P  +GNL+ L+ + 
Sbjct: 204 EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD 261

Query: 491 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL--IPSTFSNLKQIESLDLSYNKLNGK 548
           + NN +          L  L+ LD+S N++S  L  I      L+ + +L L+   L  K
Sbjct: 262 LSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELK 319

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 52/219 (23%), Positives = 83/219 (37%), Gaps = 47/219 (21%)

Query: 389 LQILDLSNNHLTGEIPEYLAV------GCVNLNSLALSNNNLQGHM------FSRNFNLT 436
           L+ L LS N  TG IP  L            L  L LS+N L            R+ +L 
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ 111

Query: 437 NLKWLLLEGN-------RFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL----TR 485
            LK   L  N       R + +  + L    +LE L L  N L G     L         
Sbjct: 112 ELK---LNNNGLGDRGLRLLAKGLKDLP--PALEKLVLGRNRLEGASCEALAKALRANRD 166

Query: 486 LQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNIS---GRLIPSTFSNLKQIESL 538
           L+ + + NN +       +         L++LD+++N ++      +  T ++LK +E L
Sbjct: 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226

Query: 539 DLSYNKLNGK--------MPHQLVELKTLEVFSVAYNNL 569
           +L  N L           +    + L TL   S++ N++
Sbjct: 227 NLGDNNLTDAGAAALASALLSPNISLLTL---SLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 437 NLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
           NLK L L  NR       +     +L+ L L+ N+L+   P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 17/193 (8%)

Query: 23  LLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA--- 79
           LLQ +     L  LDLS N          + L   ++L+ L L+ + L    L+ +A   
Sbjct: 73  LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 80  -SLFPSLKNLSISYCEVNGVLR---GQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMP 135
             L P+L+ L +    + G       +   + + L+ L+++   I    + ++ + E + 
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI--GDAGIRALAEGLK 190

Query: 136 S---LKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLR--GSLPWCLANMT--- 187
           +   L+ L L+ + L    +  L + L SL  L+ L + DN+L   G+     A ++   
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250

Query: 188 SLRILDVSFNQLT 200
           SL  L +S N +T
Sbjct: 251 SLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 510 LQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569
           L+ LD+S+N ++  +    F  L  ++ LDLS N L    P     L +L    ++ NNL
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 389 LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG---HMFSRNFNLTNLKWLLLEG 445
           L+ LDLSNN LT  IP+    G  NL  L LS NNL       FS    L +L+ L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 446 NRF 448
           N  
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK 544
            L+ + + NN L       F  L  L++LD+S NN++  + P  FS L  + SLDLS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 545 L 545
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 461 SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 520
           +L+ L L+NN L+         L  L+ + +  N+L    P  F  L  L+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 164 HLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH 223
           +L+ L +++N L          + +L++LD+S N LT SIS      L S+  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 224 F 224
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 28/168 (16%)

Query: 11  GLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTT-QELHNFTNLEYLTLDESS 69
            L G      +K L++      L  L+L+ N   D  I    + L    NLE L L+ + 
Sbjct: 148 RLEGASCEALAKALRANRD---LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204

Query: 70  LHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALN--TSFL 127
           L                       +       +   S KSLE L++    +      +  
Sbjct: 205 L----------------------TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242

Query: 128 QIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDL 175
             +     SL  LSLS + +  + ++ L + L     L EL +  N  
Sbjct: 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN 423
           +L S ++S N L      +F  +  L++LDLS N+LT  I      G  +L SL LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 424 L 424
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	682
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.35
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.25
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
PLN03150	623	hypothetical protein; Provisional	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.23
KOG4341	483	consensus F-box protein containing LRR [General fu	98.13
KOG4341	483	consensus F-box protein containing LRR [General fu	98.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.75
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.74
PRK15386	426	type III secretion protein GogB; Provisional	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.13
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.63
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.39
KOG4308	478	consensus LRR-containing protein [Function unknown	95.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.28
KOG4308	478	consensus LRR-containing protein [Function unknown	93.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.59
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.85
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.32
smart00370	26	LRR Leucine-rich repeats, outliers.	89.32
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.98
smart00370	26	LRR Leucine-rich repeats, outliers.	88.98
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	87.53
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.17
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.46
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.13
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.7

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.7e-59  Score=543.63  Aligned_cols=541  Identities=30%  Similarity=0.493  Sum_probs=458.5

Q ss_pred             CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCcccc-CCCCCCCEEeCCCCCCCcchhHHHhhccC
Q 045291            5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL-HNFTNLEYLTLDESSLHISLLQSIASLFP   83 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~l~~   83 (682)
                      .+++.|+|+++++  .+.++..+..+++|++|+|++|++.+..   |..+ .++++|++|++++|.+++..|.  ..+..
T Consensus        69 ~~v~~L~L~~~~i--~~~~~~~~~~l~~L~~L~Ls~n~~~~~i---p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~  141 (968)
T PLN00113         69 SRVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQLSGPI---PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN  141 (968)
T ss_pred             CcEEEEEecCCCc--cccCChHHhCCCCCCEEECCCCccCCcC---ChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence            4678888888887  5667777888888888888888876431   4443 3788888888888887766554  34677


Q ss_pred             cceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCC-CCCCCCcccccccCC
Q 045291           84 SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL-GTNSSRILDQGLCSL  162 (682)
Q Consensus        84 L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l-~~~~~~i~~~~l~~l  162 (682)
                      |+++++.+|...+.+|..  ++.+++|++|++++  +.+.+..|..+.. +++|++|++++|.+ +.    +|. .++++
T Consensus       142 L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~--n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~----~p~-~l~~l  211 (968)
T PLN00113        142 LETLDLSNNMLSGEIPND--IGSFSSLKVLDLGG--NVLVGKIPNSLTN-LTSLEFLTLASNQLVGQ----IPR-ELGQM  211 (968)
T ss_pred             CCEEECcCCcccccCChH--HhcCCCCCEEECcc--CcccccCChhhhh-CcCCCeeeccCCCCcCc----CCh-HHcCc
Confidence            888888877776666654  77788888888887  5555667777766 88888888888877 33    454 77788


Q ss_pred             CCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291          163 VHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF  242 (682)
Q Consensus       163 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  242 (682)
                      ++|++|++++|.+.+..|..++++++|++|++++|.+++.+ |..+..+++|+.|++++|.+++..+. .+..+++|+.|
T Consensus       212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L  289 (968)
T PLN00113        212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISL  289 (968)
T ss_pred             CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEE
Confidence            88888888888888778888888888888888888877666 66778888888888888887755543 36677788888


Q ss_pred             EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcC
Q 045291          243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLI  322 (682)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~  322 (682)
                      ++++|.+.                            +.+|.++..+++|+.|++++|.+.+..|.. +..+++|+.|+++
T Consensus       290 ~Ls~n~l~----------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~  340 (968)
T PLN00113        290 DLSDNSLS----------------------------GEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLW  340 (968)
T ss_pred             ECcCCeec----------------------------cCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECc
Confidence            88777654                            346778889999999999999999888887 6789999999999


Q ss_pred             CCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCc
Q 045291          323 NDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE  402 (682)
Q Consensus       323 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~  402 (682)
                      +|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.
T Consensus       341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence            99999888888889999999999999999888888766 88999999999999999999999999999999999999988


Q ss_pred             CchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcC
Q 045291          403 IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN  482 (682)
Q Consensus       403 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  482 (682)
                      +|..+. .+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++.+..|..+..
T Consensus       420 ~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~  497 (968)
T PLN00113        420 LPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS  497 (968)
T ss_pred             CChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence            877654 79999999999999999888888889999999999999998888765 4689999999999999999999999


Q ss_pred             CCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEE
Q 045291          483 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVF  562 (682)
Q Consensus       483 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  562 (682)
                      +++|++|+|++|.+.+..|..+..+++|+.|+|++|.+++ .+|..+..+++|+.|++++|++++.+|..+..+++|+.+
T Consensus       498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccc-cCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            9999999999999999999999999999999999999997 789999999999999999999999999999999999999


Q ss_pred             EccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          563 SVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       563 ~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      ++++|++.+.+|. ...+..+....+.+|+..|+.+
T Consensus       577 ~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        577 NISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             eccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence            9999999999998 5778888888899999999743

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-55  Score=513.11  Aligned_cols=519  Identities=29%  Similarity=0.420  Sum_probs=472.3

Q ss_pred             CCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHh-hccCcceeeccCccccCcccCCCCCCCCC
Q 045291           30 FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA-SLFPSLKNLSISYCEVNGVLRGQGFPSFK  108 (682)
Q Consensus        30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~l~~~~~~~~~~~~~~~~~~~l~  108 (682)
                      ..+++.|||++|++.+..   ++++..+++|++|+|++|.+++.+|..+. ++..|+++++.+|+..+.+|.    +.++
T Consensus        68 ~~~v~~L~L~~~~i~~~~---~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~l~  140 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKI---SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR----GSIP  140 (968)
T ss_pred             CCcEEEEEecCCCccccC---ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc----cccC
Confidence            458999999999998864   56899999999999999999988888776 899999999999998877774    4689


Q ss_pred             CCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCC-CCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCC
Q 045291          109 SLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL-GTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMT  187 (682)
Q Consensus       109 ~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l-~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  187 (682)
                      +|++|++++  +.+.+..|..+.. +++|++|++++|.+ +.    +|. .++++++|++|++++|.+.+.+|..+..++
T Consensus       141 ~L~~L~Ls~--n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~----~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  212 (968)
T PLN00113        141 NLETLDLSN--NMLSGEIPNDIGS-FSSLKVLDLGGNVLVGK----IPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMK  212 (968)
T ss_pred             CCCEEECcC--CcccccCChHHhc-CCCCCEEECccCccccc----CCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence            999999999  5566778888887 99999999999998 44    565 899999999999999999999999999999


Q ss_pred             CCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCccccc
Q 045291          188 SLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLN  267 (682)
Q Consensus       188 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~  267 (682)
                      +|++|++++|.+++.+ |..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+                
T Consensus       213 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~----------------  274 (968)
T PLN00113        213 SLKWIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSG----------------  274 (968)
T ss_pred             CccEEECcCCccCCcC-ChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeec----------------
Confidence            9999999999999777 78899999999999999999876654 48889999999999988753                


Q ss_pred             ceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccC
Q 045291          268 RLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSN  347 (682)
Q Consensus       268 ~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  347 (682)
                                  ..|..+..+++|+.|++++|.+.+.+|.+ +..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus       275 ------------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  341 (968)
T PLN00113        275 ------------PIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS  341 (968)
T ss_pred             ------------cCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence                        35677888999999999999999888887 67899999999999999988888889999999999999


Q ss_pred             CcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCc
Q 045291          348 NNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH  427 (682)
Q Consensus       348 n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  427 (682)
                      |.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|++++.
T Consensus       342 n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        342 NKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             CCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCCEEECcCCEeeeE
Confidence            9999888887766 89999999999999999999999999999999999999988887665 799999999999999999


Q ss_pred             ccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCC
Q 045291          428 MFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL  507 (682)
Q Consensus       428 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  507 (682)
                      .|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++++..|..+..+
T Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l  498 (968)
T PLN00113        420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL  498 (968)
T ss_pred             CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence            99999999999999999999999999888999999999999999998888765 46899999999999999999999999


Q ss_pred             CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCccc
Q 045291          508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS  587 (682)
Q Consensus       508 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~  587 (682)
                      ++|+.|++++|++.+ .+|..+.++++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..++.++
T Consensus       499 ~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  577 (968)
T PLN00113        499 SELMQLKLSENKLSG-EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN  577 (968)
T ss_pred             hccCEEECcCCccee-eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence            999999999999987 7889999999999999999999999999999999999999999999999999888899999999


Q ss_pred             ccCCCCCCCCC
Q 045291          588 YEGNIFLCGLP  598 (682)
Q Consensus       588 ~~~n~~~c~~~  598 (682)
                      +.+|++.+..|
T Consensus       578 ls~N~l~~~~p  588 (968)
T PLN00113        578 ISHNHLHGSLP  588 (968)
T ss_pred             ccCCcceeeCC
Confidence            99999887555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-44  Score=352.73  Aligned_cols=388  Identities=23%  Similarity=0.252  Sum_probs=321.7

Q ss_pred             CCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEc
Q 045291          165 LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYA  244 (682)
Q Consensus       165 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  244 (682)
                      -+.|++++|.+....+..|.++++|+++++.+|.++ .| |.......+|+.|+|.+|.|+ .+..+.+.          
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~I-P~f~~~sghl~~L~L~~N~I~-sv~se~L~----------  146 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RI-PRFGHESGHLEKLDLRHNLIS-SVTSEELS----------  146 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hc-ccccccccceeEEeeeccccc-cccHHHHH----------
Confidence            445666666666666666666666666666666666 55 444444555666666666665 22222233          


Q ss_pred             cCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCC
Q 045291          245 DNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIND  324 (682)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~  324 (682)
                                                                .++.|+.||||.|.++ .+|..-|..-.++++|+++.|
T Consensus       147 ------------------------------------------~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N  183 (873)
T KOG4194|consen  147 ------------------------------------------ALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASN  183 (873)
T ss_pred             ------------------------------------------hHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccc
Confidence                                                      3344555555555554 344333455567888888888


Q ss_pred             CCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCc
Q 045291          325 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIP  404 (682)
Q Consensus       325 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  404 (682)
                      .|+.+....|..+.+|.+|.+++|.++ .+|...|..+++|+.|+|..|+|.....-.|.++++|+.|.+..|.+. .+.
T Consensus       184 ~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~  261 (873)
T KOG4194|consen  184 RITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLD  261 (873)
T ss_pred             cccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-ccc
Confidence            888888888999999999999999998 889888888999999999999998665678999999999999999998 888


Q ss_pred             hhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCC
Q 045291          405 EYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT  484 (682)
Q Consensus       405 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  484 (682)
                      +.+|.++.++++|+|+.|+++......+.+++.|+.|++++|.+..+.+++++-+++|++|+|++|+++...++.|..+.
T Consensus       262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence            88888999999999999999988888888999999999999999999999999999999999999999989999999999


Q ss_pred             CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcc---hhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCE
Q 045291          485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI---PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEV  561 (682)
Q Consensus       485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  561 (682)
                      .|++|.|++|.+..+-..+|.++++|+.|||++|.++. .+   ...|.++++|++|++.+|++..+...+|.+++.|++
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence            99999999999998888899999999999999999875 33   356889999999999999999888889999999999


Q ss_pred             EEccCccCcccCCcccccccccCcccccCCCCCCCCCCC-----------------CCCCCCCCCCCC
Q 045291          562 FSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP-----------------ICISPATMPEAS  612 (682)
Q Consensus       562 L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~-----------------~~~~~~~~~~~~  612 (682)
                      |||.+|.+...-|+.+.++ .++++.+....++|+|.+.                 .|..|+...+..
T Consensus       421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~  487 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQS  487 (873)
T ss_pred             ecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccce
Confidence            9999999999889888887 8999999999999999865                 688888877764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-40  Score=327.31  Aligned_cols=372  Identities=23%  Similarity=0.215  Sum_probs=226.7

Q ss_pred             CCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCc
Q 045291          136 SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIE  215 (682)
Q Consensus       136 ~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  215 (682)
                      .-+.|++++|++..    +....|.++++|+++++.+|.++ .+|..-....+|+.|+|.+|.|+ ++....+..++.|+
T Consensus        79 ~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alr  152 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALR  152 (873)
T ss_pred             ceeeeecccccccc----CcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhh
Confidence            45679999999966    66667889999999999999988 77776666677999999999998 77688899999999


Q ss_pred             EEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEE
Q 045291          216 MLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVD  295 (682)
Q Consensus       216 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~  295 (682)
                      .|||+.|.++ .++...+..-.++++|++++|.++..                            -...|.++.+|..|.
T Consensus       153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l----------------------------~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTL----------------------------ETGHFDSLNSLLTLK  203 (873)
T ss_pred             hhhhhhchhh-cccCCCCCCCCCceEEeecccccccc----------------------------ccccccccchheeee
Confidence            9999999987 56666666667788888888777632                            123345566777777


Q ss_pred             cCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcC
Q 045291          296 LSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNAL  375 (682)
Q Consensus       296 ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i  375 (682)
                      |+.|+++ .+|...|.++++|+.|++..|.+......+|.++++|+.|.+..|++. .+.++.|-.+.+++.|+|+.|++
T Consensus       204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchh
Confidence            7777777 666666666777777666666666555555666666666666666655 33333333355555555555555


Q ss_pred             CcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCcc
Q 045291          376 HGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQS  455 (682)
Q Consensus       376 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  455 (682)
                      .......+.++++|+.|++|.|.|. .+......-+++|++|+|++|+++...+..|..+..|++|.++.|++......+
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a  360 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA  360 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence            5444444555555555555555554 333333333445555555555555444444444444555555555444444444


Q ss_pred             ccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcc---hhccCCCCCCEEEccCCcCCCCcchhhccCC
Q 045291          456 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP---VEFCQLDLLQILDISDNNISGRLIPSTFSNL  532 (682)
Q Consensus       456 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l  532 (682)
                      |..                        +.+|++|||++|.++..+.   ..|.++++|+.|++.+|++.. +...+|.++
T Consensus       361 f~~------------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krAfsgl  415 (873)
T KOG4194|consen  361 FVG------------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRAFSGL  415 (873)
T ss_pred             HHH------------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhhhccC
Confidence            444                        4445555555444443221   234455555555555555543 334455555


Q ss_pred             CCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291          533 KQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG  571 (682)
Q Consensus       533 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  571 (682)
                      .+|++|||.+|.|..+.|++|..+ .|+.|-+..-.+.|
T Consensus       416 ~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC  453 (873)
T KOG4194|consen  416 EALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC  453 (873)
T ss_pred             cccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence            555555555555555555555544 45555444444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=7.4e-40  Score=308.47  Aligned_cols=481  Identities=24%  Similarity=0.306  Sum_probs=274.5

Q ss_pred             CCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcc
Q 045291            6 KLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL   85 (682)
Q Consensus         6 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~   85 (682)
                      -|..|.+++|.+   ..+.+.+.++..+.+|++++|++...    |++++++..++.++.++|+++ .+|+.+..+..++
T Consensus        46 ~l~~lils~N~l---~~l~~dl~nL~~l~vl~~~~n~l~~l----p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   46 DLQKLILSHNDL---EVLREDLKNLACLTVLNVHDNKLSQL----PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV  117 (565)
T ss_pred             chhhhhhccCch---hhccHhhhcccceeEEEeccchhhhC----CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence            356677777776   44556677788888888888887777    778888888888888888776 6677777777777


Q ss_pred             eeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCC
Q 045291           86 KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHL  165 (682)
Q Consensus        86 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L  165 (682)
                      +++.++|+... ++++  ++.+..|..++...|.+   ...|+.++. +.+|..|++.+|.+..    .|++.+. ++.|
T Consensus       118 ~l~~s~n~~~e-l~~~--i~~~~~l~dl~~~~N~i---~slp~~~~~-~~~l~~l~~~~n~l~~----l~~~~i~-m~~L  185 (565)
T KOG0472|consen  118 KLDCSSNELKE-LPDS--IGRLLDLEDLDATNNQI---SSLPEDMVN-LSKLSKLDLEGNKLKA----LPENHIA-MKRL  185 (565)
T ss_pred             hhhccccceee-cCch--HHHHhhhhhhhcccccc---ccCchHHHH-HHHHHHhhccccchhh----CCHHHHH-HHHH
Confidence            77777776653 4443  66667777777666333   345566555 6677777777776655    5553333 6677


Q ss_pred             CEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEcc
Q 045291          166 QELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYAD  245 (682)
Q Consensus       166 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  245 (682)
                      ++|+...|.+. .+|..++.+.+|+.|+++.|++. .+ | .|..+..|+++.++.|.+. .++.+....++++..|+++
T Consensus       186 ~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l-P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  186 KHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL-P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             Hhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC-C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence            77777666665 56666777777777777777766 44 3 5666667777777777665 3444445556666666666


Q ss_pred             CCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCC
Q 045291          246 NNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDS  325 (682)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~  325 (682)
                      +|+++                             ..|+.+.-+.+|+.||+|+|.+++ .|.. ++++ .|+.|.+.+|.
T Consensus       261 dNklk-----------------------------e~Pde~clLrsL~rLDlSNN~is~-Lp~s-Lgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  261 DNKLK-----------------------------EVPDEICLLRSLERLDLSNNDISS-LPYS-LGNL-HLKFLALEGNP  308 (565)
T ss_pred             ccccc-----------------------------cCchHHHHhhhhhhhcccCCcccc-CCcc-cccc-eeeehhhcCCc
Confidence            66654                             244445555555666666665552 2322 3344 45555555544


Q ss_pred             CcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE----EecCCc---CC-cC-CCc---ccCCCCCCCEEE
Q 045291          326 IGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF----NISTNA---LH-GS-IPS---SFGNMKFLQILD  393 (682)
Q Consensus       326 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L----~l~~n~---i~-~~-~~~---~~~~l~~L~~L~  393 (682)
                      +..+-...+.+                    ...+.++.|+.-    .++...   -+ .. .+.   ....+.+.+.|+
T Consensus       309 lrTiRr~ii~~--------------------gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~  368 (565)
T KOG0472|consen  309 LRTIRREIISK--------------------GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD  368 (565)
T ss_pred             hHHHHHHHHcc--------------------cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence            43221111100                    000001111110    000000   00 00 011   112234456666


Q ss_pred             ccCCcCCCcCchhhhhCCC--CCCEEEccCCcCCCcccccCCCCCCc-cEEECCCCcCcccCCccccCCCCCCEEeccCC
Q 045291          394 LSNNHLTGEIPEYLAVGCV--NLNSLALSNNNLQGHMFSRNFNLTNL-KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN  470 (682)
Q Consensus       394 l~~n~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  470 (682)
                      +++-+++ .+|..+|..-.  -...++++.|++.. .|..+..+..+ +.+.+++|.+. ..|..++.+++|..|++++|
T Consensus       369 ~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN  445 (565)
T KOG0472|consen  369 VSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNN  445 (565)
T ss_pred             ccccccc-cCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccc
Confidence            6666665 66666653221  14566666666653 22222222222 22334444333 55555666666666666666


Q ss_pred             cCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291          471 SLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP  550 (682)
Q Consensus       471 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  550 (682)
                      .+. .+|..++.+..|+.|+++.|++. ..|.....+..++.+-.++|++.. ..+..+.++.+|..||+.+|.+. .+|
T Consensus       446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~-vd~~~l~nm~nL~tLDL~nNdlq-~IP  521 (565)
T KOG0472|consen  446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS-VDPSGLKNMRNLTTLDLQNNDLQ-QIP  521 (565)
T ss_pred             hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc-cChHHhhhhhhcceeccCCCchh-hCC
Confidence            665 55555666666666666666665 555555555555555555666654 44455666666666666666666 455


Q ss_pred             hhhhcCCCCCEEEccCccCc
Q 045291          551 HQLVELKTLEVFSVAYNNLS  570 (682)
Q Consensus       551 ~~l~~l~~L~~L~l~~n~l~  570 (682)
                      ..++++++|++|++++|+|.
T Consensus       522 p~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  522 PILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhccccceeEEEecCCccC
Confidence            55666666666666666665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.9e-38  Score=298.99  Aligned_cols=485  Identities=24%  Similarity=0.323  Sum_probs=366.9

Q ss_pred             EEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCceee
Q 045291           35 TLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLH  114 (682)
Q Consensus        35 ~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  114 (682)
                      .|++|+..+..+    |.....+-           .+....+.++.-..+.++.+++|+.....++   +.++..|.+|+
T Consensus        13 ~lnlsnr~l~~v----p~~vyq~~-----------~t~~e~e~wW~qv~l~~lils~N~l~~l~~d---l~nL~~l~vl~   74 (565)
T KOG0472|consen   13 SLNLSNRSLKDV----PTEVYQIN-----------LTTGEGENWWEQVDLQKLILSHNDLEVLRED---LKNLACLTVLN   74 (565)
T ss_pred             ccccccchhhhc----cHHHHHHH-----------hhccchhhhhhhcchhhhhhccCchhhccHh---hhcccceeEEE
Confidence            366666666655    44333221           2223344455556788888888887654443   78889999999


Q ss_pred             cCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEec
Q 045291          115 MSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV  194 (682)
Q Consensus       115 l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  194 (682)
                      ++.|.  . ...|+.++. +..++.|+.+.|++..    +|. .++.+..|+.++++.|.+. ..|+.++.+-.|+.++.
T Consensus        75 ~~~n~--l-~~lp~aig~-l~~l~~l~vs~n~ls~----lp~-~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen   75 VHDNK--L-SQLPAAIGE-LEALKSLNVSHNKLSE----LPE-QIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA  144 (565)
T ss_pred             eccch--h-hhCCHHHHH-HHHHHHhhcccchHhh----ccH-HHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence            99843  3 467778888 8899999999999877    886 8888899999999999988 77778888899999999


Q ss_pred             cCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceecccc
Q 045291          195 SFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSS  274 (682)
Q Consensus       195 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  274 (682)
                      .+|+++ ++ |..+..+.++..+++.+|+++ ..+.+... ++.|++++...|-+.                        
T Consensus       145 ~~N~i~-sl-p~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~------------------------  196 (565)
T KOG0472|consen  145 TNNQIS-SL-PEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE------------------------  196 (565)
T ss_pred             cccccc-cC-chHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh------------------------
Confidence            999998 77 777888999999999999987 34444333 778888888777654                        


Q ss_pred             CCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCC
Q 045291          275 YGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHM  354 (682)
Q Consensus       275 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  354 (682)
                           .+|..++.+..|..|++..|++. ..|+  |.+|+.|++++...|.+.-........++++..||++.|+++ ..
T Consensus       197 -----tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~  267 (565)
T KOG0472|consen  197 -----TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV  267 (565)
T ss_pred             -----cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence                 47888889999999999999987 6775  788999999999999988776666778899999999999997 88


Q ss_pred             ChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhh-------------------------
Q 045291          355 PVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAV-------------------------  409 (682)
Q Consensus       355 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------------------------  409 (682)
                      |..+.- +.+|+.||+++|.|+ ..|..++++ .|+.|-+.||.+. .+-..+..                         
T Consensus       268 Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~  343 (565)
T KOG0472|consen  268 PDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG  343 (565)
T ss_pred             chHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence            888876 888999999999998 455678888 8999999998875 33222211                         


Q ss_pred             ----------------CCCCCCEEEccCCcCCCcccccCCC--CCCccEEECCCCcCcccCCccccCCCCCCE-EeccCC
Q 045291          410 ----------------GCVNLNSLALSNNNLQGHMFSRNFN--LTNLKWLLLEGNRFVGEIPQSLSKCSSLEG-LYLNNN  470 (682)
Q Consensus       410 ----------------~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~-L~l~~n  470 (682)
                                      ...+.++|+++.-+++..+.+.|..  -.-.+..+++.|++. .+|..+..+..+.+ +.+++|
T Consensus       344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn  422 (565)
T KOG0472|consen  344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN  422 (565)
T ss_pred             ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC
Confidence                            1123445555555554433332221  112455666666655 44554444444443 344444


Q ss_pred             cCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291          471 SLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP  550 (682)
Q Consensus       471 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  550 (682)
                      .+ +.+|..+..+++|..|+|++|.+. .+|..+..+..|+.|++|.|++.  ..|.....+..++.+-.++|++....+
T Consensus       423 ~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  423 KI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             cc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhccccccccCh
Confidence            44 478888889999999999999887 56677778888999999999997  488888888888888888899998888


Q ss_pred             hhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCC
Q 045291          551 HQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFL  594 (682)
Q Consensus       551 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~  594 (682)
                      +.+.++.+|..||+.+|.+. .+|..++.+.+++.+.+.|||+.
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            88999999999999999999 56655999999999999999976

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-34  Score=299.94  Aligned_cols=487  Identities=26%  Similarity=0.331  Sum_probs=336.4

Q ss_pred             CcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcce
Q 045291            7 LKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK   86 (682)
Q Consensus         7 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~   86 (682)
                      +..|+++.|.+.  ....+.+++.-+|+.||+|+|.++..    |..+..+.+|+.|+++.|.+. ..|....++..|++
T Consensus        23 ~~~ln~~~N~~l--~~pl~~~~~~v~L~~l~lsnn~~~~f----p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~   95 (1081)
T KOG0618|consen   23 LQILNLRRNSLL--SRPLEFVEKRVKLKSLDLSNNQISSF----PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQY   95 (1081)
T ss_pred             HHhhhccccccc--cCchHHhhheeeeEEeeccccccccC----CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchh
Confidence            456677777652  22234455555688888888887776    667777888888888887776 45566666666666


Q ss_pred             eeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCC
Q 045291           87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQ  166 (682)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~  166 (682)
                      +.+..|. ....|..  +..+++|+.|++++|..   +.+|..+.. +..+..+..++|.-      +.  .++... .+
T Consensus        96 lnL~~n~-l~~lP~~--~~~lknl~~LdlS~N~f---~~~Pl~i~~-lt~~~~~~~s~N~~------~~--~lg~~~-ik  159 (1081)
T KOG0618|consen   96 LNLKNNR-LQSLPAS--ISELKNLQYLDLSFNHF---GPIPLVIEV-LTAEEELAASNNEK------IQ--RLGQTS-IK  159 (1081)
T ss_pred             heeccch-hhcCchh--HHhhhcccccccchhcc---CCCchhHHh-hhHHHHHhhhcchh------hh--hhcccc-ch
Confidence            6554444 3446654  77778888888887433   456666666 77777777777711      11  122222 67


Q ss_pred             EEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccC
Q 045291          167 ELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN  246 (682)
Q Consensus       167 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  246 (682)
                      .+++..|.+.+.++.....++.  .|+|++|.+.    ...+..+++|+.|....|.++. +    -...++++.++.+.
T Consensus       160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~-l----~~~g~~l~~L~a~~  228 (1081)
T KOG0618|consen  160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLSE-L----EISGPSLTALYADH  228 (1081)
T ss_pred             hhhhhhhhcccchhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccce-E----EecCcchheeeecc
Confidence            7777777777666666665555  5888888776    2346677778888887777752 1    12346677777777


Q ss_pred             CcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCC
Q 045291          247 NELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSI  326 (682)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  326 (682)
                      |.+.....                              -....+|+.++++.++++ .+|+| ...+.+|+.++..+|.+
T Consensus       229 n~l~~~~~------------------------------~p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  229 NPLTTLDV------------------------------HPVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNANHNRL  276 (1081)
T ss_pred             Ccceeecc------------------------------ccccccceeeecchhhhh-cchHH-HHhcccceEecccchhH
Confidence            77652111                              112347888888888887 66777 67888888888888888


Q ss_pred             cccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCC-CCEEEccCCcCCCcCch
Q 045291          327 GGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKF-LQILDLSNNHLTGEIPE  405 (682)
Q Consensus       327 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~  405 (682)
                      ... +..+...++|+.|++.+|.+. .+|..... +.+|++|++..|.+....+..|.-... |+.|..+.|++. ..|.
T Consensus       277 ~~l-p~ri~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~  352 (1081)
T KOG0618|consen  277 VAL-PLRISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPS  352 (1081)
T ss_pred             Hhh-HHHHhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-cccc
Confidence            554 334445678888888888886 56654433 778888888888887544444444433 677777777776 5554


Q ss_pred             hhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCC
Q 045291          406 YLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR  485 (682)
Q Consensus       406 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  485 (682)
                      .-....+.|+.|++.+|.+++.....+.+..+|+.|+|++|.+.......+.+++.|++|++++|.++ .+|..+..+..
T Consensus       353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~  431 (1081)
T KOG0618|consen  353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR  431 (1081)
T ss_pred             ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence            33335667888888888888777777778888888888888888666677888888888888888887 77788888888


Q ss_pred             CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEcc
Q 045291          486 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVA  565 (682)
Q Consensus       486 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  565 (682)
                      |++|...+|++. ..| .+..+++|+.+|+|.|+++....+..... ++|+.||+++|.-.......|..+..+...++.
T Consensus       432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~  508 (1081)
T KOG0618|consen  432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT  508 (1081)
T ss_pred             hHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecc
Confidence            888888888887 555 67788888888888888875444443322 788888888887554555666666677666666


Q ss_pred             Cc
Q 045291          566 YN  567 (682)
Q Consensus       566 ~n  567 (682)
                      -|
T Consensus       509 ~~  510 (1081)
T KOG0618|consen  509 LN  510 (1081)
T ss_pred             cC
Confidence            65

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=5.4e-34  Score=296.00  Aligned_cols=504  Identities=22%  Similarity=0.228  Sum_probs=328.2

Q ss_pred             EeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeec
Q 045291           10 FGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS   89 (682)
Q Consensus        10 L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~   89 (682)
                      +|.+..++   ..+|.-+-.-..+..|+++.|-+-...   .+.+.+.-+|+.|++++|.++ .-|..+..+..|+.+.+
T Consensus         3 vd~s~~~l---~~ip~~i~~~~~~~~ln~~~N~~l~~p---l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~   75 (1081)
T KOG0618|consen    3 VDASDEQL---ELIPEQILNNEALQILNLRRNSLLSRP---LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNL   75 (1081)
T ss_pred             cccccccC---cccchhhccHHHHHhhhccccccccCc---hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhccc
Confidence            45555554   444554444455667777777544321   123344445777777666654 44555555556666655


Q ss_pred             cCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEE
Q 045291           90 ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELR  169 (682)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~  169 (682)
                      +.|.+ ..+|..  ..++.+|+++.|..|..   ...|.++.. +.+|++|+++.|.++.    +|. .+..+..+..+.
T Consensus        76 s~n~i-~~vp~s--~~~~~~l~~lnL~~n~l---~~lP~~~~~-lknl~~LdlS~N~f~~----~Pl-~i~~lt~~~~~~  143 (1081)
T KOG0618|consen   76 SRNYI-RSVPSS--CSNMRNLQYLNLKNNRL---QSLPASISE-LKNLQYLDLSFNHFGP----IPL-VIEVLTAEEELA  143 (1081)
T ss_pred             chhhH-hhCchh--hhhhhcchhheeccchh---hcCchhHHh-hhcccccccchhccCC----Cch-hHHhhhHHHHHh
Confidence            54433 334432  55666666666665322   455555555 6666666666666655    554 555666666666


Q ss_pred             ccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcc
Q 045291          170 MADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL  249 (682)
Q Consensus       170 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~  249 (682)
                      .++|.....++.    . ..+.+++..|.+.+.+ +..+..+..  .|+|++|.+. ..   .+..+.+|+.+....|.+
T Consensus       144 ~s~N~~~~~lg~----~-~ik~~~l~~n~l~~~~-~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~l  211 (1081)
T KOG0618|consen  144 ASNNEKIQRLGQ----T-SIKKLDLRLNVLGGSF-LIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQL  211 (1081)
T ss_pred             hhcchhhhhhcc----c-cchhhhhhhhhcccch-hcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhccc
Confidence            666622212221    1 1556666666665544 333444443  4666666654 11   134555566655555554


Q ss_pred             cccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCccc
Q 045291          250 NAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGP  329 (682)
Q Consensus       250 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  329 (682)
                      ...                                ....++++.|+.+.|.+....+.   ..-.+|++++++++.+...
T Consensus       212 s~l--------------------------------~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~l  256 (1081)
T KOG0618|consen  212 SEL--------------------------------EISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNL  256 (1081)
T ss_pred             ceE--------------------------------EecCcchheeeeccCcceeeccc---cccccceeeecchhhhhcc
Confidence            321                                12335678888888887633322   2345788888888888887


Q ss_pred             CCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhh
Q 045291          330 FRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAV  409 (682)
Q Consensus       330 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  409 (682)
                      . .+...+.+|+.++..+|.++ .+|..++. ..+|+.|.+..|.+. -+|....++++|++|++..|.+. .+|...+.
T Consensus       257 p-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~  331 (1081)
T KOG0618|consen  257 P-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLA  331 (1081)
T ss_pred             h-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHh
Confidence            6 77778888999999988886 78877776 678888888888887 45556677888999999999886 78877665


Q ss_pred             CCCC-CCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCe
Q 045291          410 GCVN-LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQY  488 (682)
Q Consensus       410 ~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  488 (682)
                      .... |..|+.+.|.+.......-...+.|+.|++.+|.++...-..+.+...|+.|+|++|++.......+.+++.|++
T Consensus       332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee  411 (1081)
T KOG0618|consen  332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE  411 (1081)
T ss_pred             hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence            4444 777777877776544322234667888899999888776667788889999999999988677777888899999


Q ss_pred             ecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCcc
Q 045291          489 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN  568 (682)
Q Consensus       489 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  568 (682)
                      |+|++|+++ .+|..+..+..|++|...+|++..  .| .+..++.|+.+|++.|.++...-.....-++|++||+++|.
T Consensus       412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             Hhcccchhh-hhhHHHHhhhhhHHHhhcCCceee--ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            999999998 566888888899999999998873  66 67888999999999998885533322333789999999998


Q ss_pred             CcccCCcccccccccCcccc
Q 045291          569 LSGEIPEWTAQFATFNESSY  588 (682)
Q Consensus       569 l~~~~~~~~~~~~~l~~~~~  588 (682)
                      ..-.....+..++.+...++
T Consensus       488 ~l~~d~~~l~~l~~l~~~~i  507 (1081)
T KOG0618|consen  488 RLVFDHKTLKVLKSLSQMDI  507 (1081)
T ss_pred             ccccchhhhHHhhhhhheec
Confidence            64333333444444443333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.9e-33  Score=275.10  Aligned_cols=364  Identities=27%  Similarity=0.384  Sum_probs=162.9

Q ss_pred             CCCCEEEccCCCCc-ccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcE
Q 045291          163 VHLQELRMADNDLR-GSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKI  241 (682)
Q Consensus       163 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  241 (682)
                      +-.+-.++++|.++ +.+|.....+++++.|.|...++. .+ |..+..+.+|++|.+++|++....  +.+..++.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~v-PeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QV-PEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hC-hHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHH
Confidence            33444444555444 244444445555555555544444 34 444445555555555555443211  12344444444


Q ss_pred             EEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEc
Q 045291          242 FYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFL  321 (682)
Q Consensus       242 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l  321 (682)
                      +.++.|.+...                           -+|..+..+..|++||+|+|++. +.|.. +....++-.|++
T Consensus        83 v~~R~N~LKns---------------------------GiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   83 VIVRDNNLKNS---------------------------GIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIVLNL  133 (1255)
T ss_pred             HhhhccccccC---------------------------CCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEEEEc
Confidence            44444444321                           13333444444555555555444 34443 334444444445


Q ss_pred             CCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCC-
Q 045291          322 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLT-  400 (682)
Q Consensus       322 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~-  400 (682)
                      ++|+|..+...-|.+++.|-.||+++|.+. .+|..+.. +..|++|++++|.+....-..+..+++|++|.+++.+-+ 
T Consensus       134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  134 SYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             ccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence            555444444444444444444555555443 44444433 444555555554443222222233444444444443211 


Q ss_pred             CcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhh
Q 045291          401 GEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL  480 (682)
Q Consensus       401 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  480 (682)
                      ..+|..+- ++.+|..+|++.|.+. ..|..+..+++|+.|++++|.++ .+......+.+|++|+++.|+++ ..|+++
T Consensus       212 ~N~Ptsld-~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av  287 (1255)
T KOG0444|consen  212 DNIPTSLD-DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV  287 (1255)
T ss_pred             hcCCCchh-hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence            13333332 3444444444444444 23334444444455555554444 22333333444445555555544 444444


Q ss_pred             cCCCCCCeecCCCCcCcC-CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCC
Q 045291          481 GNLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL  559 (682)
Q Consensus       481 ~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  559 (682)
                      ..++.|+.|.+.+|+++- -+|+.++.+.+|+.+..++|.+.  ..|+.+..|..|+.|.|+.|.+- .+|+++.-++-|
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l  364 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL  364 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence            444555555544444431 23444444444555555554443  34444444555555555555444 344444444555


Q ss_pred             CEEEccCcc
Q 045291          560 EVFSVAYNN  568 (682)
Q Consensus       560 ~~L~l~~n~  568 (682)
                      +.||+..|+
T Consensus       365 ~vLDlreNp  373 (1255)
T KOG0444|consen  365 KVLDLRENP  373 (1255)
T ss_pred             ceeeccCCc
Confidence            555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.7e-32  Score=269.96  Aligned_cols=384  Identities=27%  Similarity=0.341  Sum_probs=261.2

Q ss_pred             CCCCceeecCCCccccc-cchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcC
Q 045291          107 FKSLEHLHMSFAPIALN-TSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLAN  185 (682)
Q Consensus       107 l~~L~~L~l~~~~~~~~-~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  185 (682)
                      ++-.+-.|+++  +.++ +.+|..+.. +++++.|.|...++..    +|. .++.|.+|++|.+++|++. .+...+..
T Consensus         6 LpFVrGvDfsg--NDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~~----vPe-EL~~lqkLEHLs~~HN~L~-~vhGELs~   76 (1255)
T KOG0444|consen    6 LPFVRGVDFSG--NDFSGDRFPHDVEQ-MTQMTWLKLNRTKLEQ----VPE-ELSRLQKLEHLSMAHNQLI-SVHGELSD   76 (1255)
T ss_pred             cceeecccccC--CcCCCCcCchhHHH-hhheeEEEechhhhhh----ChH-HHHHHhhhhhhhhhhhhhH-hhhhhhcc
Confidence            45556667777  5555 567777776 8888888888887766    775 7888888888888888877 44456777


Q ss_pred             CCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCccc
Q 045291          186 MTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ  265 (682)
Q Consensus       186 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  265 (682)
                      ++.|+.+++..|++..+-.|..+..+..|..|||++|++. ..                                     
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-Ev-------------------------------------  118 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EV-------------------------------------  118 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hc-------------------------------------
Confidence            8888888888887764433666777777777777777765 22                                     


Q ss_pred             ccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEc
Q 045291          266 LNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDV  345 (682)
Q Consensus       266 l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  345 (682)
                                      |..+..-+++-+|++|+|.|. .+|..++.+++.|-.|++++|.+.... .....+..|++|++
T Consensus       119 ----------------P~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LP-PQ~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  119 ----------------PTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLP-PQIRRLSMLQTLKL  180 (1255)
T ss_pred             ----------------chhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcC-HHHHHHhhhhhhhc
Confidence                            333334445555555555554 555555556666666666666655432 23344556666666


Q ss_pred             cCCcCCCCCChhhhhcCCCceEEEecCCcCC-cCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcC
Q 045291          346 SNNNFQGHMPVEIGDILPSLFSFNISTNALH-GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL  424 (682)
Q Consensus       346 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l  424 (682)
                      ++|.+.-.--..+. .+.+|+.|++++.+-+ ..+|..+..+.+|..+|+|.|.+. .+|+.++ .+++|+.|++++|++
T Consensus       181 s~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  181 SNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKI  257 (1255)
T ss_pred             CCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCce
Confidence            66655311001111 1455666666665443 346667777778888888888776 7777776 677888888888877


Q ss_pred             CCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCC-CCchhhhcCCCCCCeecCCCCcCcCCcchh
Q 045291          425 QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS-GKIPRWLGNLTRLQYIIMPNNHLEGPIPVE  503 (682)
Q Consensus       425 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  503 (682)
                      +.... ....-.+|++|+++.|+++ .+|.++..++.|+.|+..+|.++ +-+|+.++.+..|+.+...+|.+. ..|+.
T Consensus       258 teL~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg  334 (1255)
T KOG0444|consen  258 TELNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG  334 (1255)
T ss_pred             eeeec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence            74322 2233457888888888887 67888888888888888888775 346778888888888888888887 78888


Q ss_pred             ccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEE
Q 045291          504 FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFS  563 (682)
Q Consensus       504 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  563 (682)
                      ++.+..|+.|.|++|++-  ..|+++.-++.|+.||+..|.-....|..-..-++|+.-+
T Consensus       335 lcRC~kL~kL~L~~NrLi--TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYN  392 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNRLI--TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYN  392 (1255)
T ss_pred             hhhhHHHHHhccccccee--echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeee
Confidence            888888888888888875  3788888888888888888876645543222224454433

>PLN03210 Resistant to P

Probab=99.91  E-value=1.1e-22  Score=237.30  Aligned_cols=341  Identities=20%  Similarity=0.207  Sum_probs=161.3

Q ss_pred             cccccccCCCCCCEEEccCCC------CcccCchhhcCCC-CCCEEeccCCccccccCCchhcccCCCcEEecCCCcCcc
Q 045291          154 ILDQGLCSLVHLQELRMADND------LRGSLPWCLANMT-SLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQI  226 (682)
Q Consensus       154 i~~~~l~~l~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  226 (682)
                      +...+|.++++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+. .+ |..+ ...+|++|++.+|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~l-P~~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CM-PSNF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CC-CCcC-CccCCcEEECcCcccc-
Confidence            344456677777777765442      2223455555543 5777777777665 55 3333 3466777777776654 


Q ss_pred             ccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCc
Q 045291          227 PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP  306 (682)
Q Consensus       227 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~  306 (682)
                      ..+. .+..+++|+.++++++....                            .+| .+..+++|+.|++++|.....+|
T Consensus       625 ~L~~-~~~~l~~Lk~L~Ls~~~~l~----------------------------~ip-~ls~l~~Le~L~L~~c~~L~~lp  674 (1153)
T PLN03210        625 KLWD-GVHSLTGLRNIDLRGSKNLK----------------------------EIP-DLSMATNLETLKLSDCSSLVELP  674 (1153)
T ss_pred             cccc-ccccCCCCCEEECCCCCCcC----------------------------cCC-ccccCCcccEEEecCCCCccccc
Confidence            2221 23455666666665543211                            122 13455667777777766555566


Q ss_pred             hHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCC
Q 045291          307 TWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNM  386 (682)
Q Consensus       307 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l  386 (682)
                      .. +..+++|+.|++++|......+..+ .+++|+.|++++|...+.+|.    ..++|++|++++|.+.. .|..+ .+
T Consensus       675 ~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l  746 (1153)
T PLN03210        675 SS-IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RL  746 (1153)
T ss_pred             hh-hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cc
Confidence            55 4566666666666654322222222 455666666666644333332    13456666666666542 33222 34


Q ss_pred             CCCCEEEccCCcCCC------cCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCC
Q 045291          387 KFLQILDLSNNHLTG------EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCS  460 (682)
Q Consensus       387 ~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  460 (682)
                      ++|++|.+.++....      .++...+...++|+.|++++|......|..+.++++|+.|++++|...+.+|... +++
T Consensus       747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~  825 (1153)
T PLN03210        747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE  825 (1153)
T ss_pred             cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence            555555555432110      0111111123344444444444443444444444444444444443332333332 344


Q ss_pred             CCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCc-CCCCcchhhccCCCCCcEEE
Q 045291          461 SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLIPSTFSNLKQIESLD  539 (682)
Q Consensus       461 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~  539 (682)
                      +|++|++++|.....+|..   .++|++|+|++|.++ ..|..+..+++|+.|++++|+ +.  .+|..+..+++|+.++
T Consensus       826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~--~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ--RVSLNISKLKHLETVD  899 (1153)
T ss_pred             ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC--ccCcccccccCCCeee
Confidence            4444444444332222221   234444444444444 233344444444444444422 22  1333334444444444


Q ss_pred             CCCC
Q 045291          540 LSYN  543 (682)
Q Consensus       540 l~~n  543 (682)
                      +++|
T Consensus       900 l~~C  903 (1153)
T PLN03210        900 FSDC  903 (1153)
T ss_pred             cCCC
Confidence            4444

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=2.3e-26  Score=217.45  Aligned_cols=386  Identities=19%  Similarity=0.196  Sum_probs=238.1

Q ss_pred             CCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccC-CccccccCCchhcccCCC
Q 045291          136 SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSF-NQLTGSISSSPLVHLTSI  214 (682)
Q Consensus       136 ~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~L  214 (682)
                      .-..++|..|+|..    ||+++|..+++||.|+|++|.|+.+-|++|.++++|.+|.+.+ |+|+ .++...|..+..+
T Consensus        68 ~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            56678888888877    8888888888999999999988888888888888887776666 7887 7767788888888


Q ss_pred             cEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEE
Q 045291          215 EMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFV  294 (682)
Q Consensus       215 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L  294 (682)
                      +.|.+.-|++. .+..+.+..++++..|.+.+|.+...-.                            ..+..+..++.+
T Consensus       143 qrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~----------------------------~tf~~l~~i~tl  193 (498)
T KOG4237|consen  143 QRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICK----------------------------GTFQGLAAIKTL  193 (498)
T ss_pred             HHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhcc----------------------------ccccchhccchH
Confidence            88888888887 4445567788888888888877653211                            122333344444


Q ss_pred             EcCCCCCcCc------------CchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEE--Ec-cCCcCCCCCChhhh
Q 045291          295 DLSHIKMNGE------------FPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL--DV-SNNNFQGHMPVEIG  359 (682)
Q Consensus       295 ~ls~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L--~l-~~n~~~~~~~~~~~  359 (682)
                      .+..|.+-..            .|. .+++........+.+..+..+....|...  ++.+  .+ +.+...+..|..-+
T Consensus       194 hlA~np~icdCnL~wla~~~a~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf  270 (498)
T KOG4237|consen  194 HLAQNPFICDCNLPWLADDLAMNPI-ETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCF  270 (498)
T ss_pred             hhhcCccccccccchhhhHHhhchh-hcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHH
Confidence            4444442110            000 02222222222233333333222222221  2222  11 22334446677667


Q ss_pred             hcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCcc
Q 045291          360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLK  439 (682)
Q Consensus       360 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  439 (682)
                      ..+++|++|++++|+++.+.+.+|.+...+++|.|..|++. .+...+|.++..|++|++.+|+|+...|.+|..+..|.
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            77899999999999999888888999999999999999987 88888888899999999999999988888888888888


Q ss_pred             EEECCCCcCccc-----CCcc-----------ccCCCCCCEEeccCCcCCCC---chhhh---------cCCCCCCee-c
Q 045291          440 WLLLEGNRFVGE-----IPQS-----------LSKCSSLEGLYLNNNSLSGK---IPRWL---------GNLTRLQYI-I  490 (682)
Q Consensus       440 ~L~l~~n~~~~~-----~~~~-----------~~~l~~L~~L~l~~n~~~~~---~~~~~---------~~l~~L~~L-~  490 (682)
                      +|.+-.|++...     +.++           -.+...++.+.+++..+.+.   .|+..         ..++-+.++ .
T Consensus       350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvR  429 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVR  429 (498)
T ss_pred             eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHh
Confidence            888877765311     0011           11123445555555544311   11110         111122221 1


Q ss_pred             CCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCc
Q 045291          491 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN  567 (682)
Q Consensus       491 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  567 (682)
                      -++..+. .+|..+.  ..-.+|++.+|.++.  +|..  .+.+| .+|+++|++.......|.++++|.+|-+++|
T Consensus       430 cSnk~lk-~lp~~iP--~d~telyl~gn~~~~--vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  430 CSNKLLK-LLPRGIP--VDVTELYLDGNAITS--VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcccchh-hcCCCCC--chhHHHhcccchhcc--cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            1121222 2222211  124556666666653  4433  44555 6666666666555556666666666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=1.1e-25  Score=212.85  Aligned_cols=257  Identities=20%  Similarity=0.239  Sum_probs=172.6

Q ss_pred             CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccC-CcCCCcCchhhhhCCCCCCEE
Q 045291          339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSN-NHLTGEIPEYLAVGCVNLNSL  417 (682)
Q Consensus       339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L  417 (682)
                      .-.+++|..|+|+ .+|...|..+++|+.|||++|.|+.+.|++|.+++++..|-+.+ |+|+ .++...|.++.+|+.|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            3445566666665 55555555566666666666666666666666666665555544 5555 6666666666666666


Q ss_pred             EccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcC-------------------------
Q 045291          418 ALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL-------------------------  472 (682)
Q Consensus       418 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~-------------------------  472 (682)
                      .+.-|++.....+.|..++++..|.+.+|.+..+...+|..+.+++.+.+..|++                         
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            6666666655555666666666666666666544444566666666666555541                         


Q ss_pred             -----------CCCchhhhcCCCCCCee--cC-CCCcCcCCcc-hhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcE
Q 045291          473 -----------SGKIPRWLGNLTRLQYI--IM-PNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIES  537 (682)
Q Consensus       473 -----------~~~~~~~~~~l~~L~~L--~L-~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~  537 (682)
                                 ....+..|..  +++.+  .+ +.+...++.| ..|..+++|+.|+|++|+++. +.+.+|.+...+++
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQE  302 (498)
T ss_pred             cchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhh
Confidence                       1111111111  12222  11 2222333333 568999999999999999987 77899999999999


Q ss_pred             EECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCCC
Q 045291          538 LDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP  600 (682)
Q Consensus       538 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~  600 (682)
                      |.|.+|+|.......|.++..|+.|+|++|++++.-|..+....++..+.+-.|||.|+|.+.
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            999999999777788999999999999999999998888888888899999999999999653

>PLN03210 Resistant to P

Probab=99.87  E-value=1.2e-20  Score=220.31  Aligned_cols=341  Identities=21%  Similarity=0.196  Sum_probs=246.5

Q ss_pred             chhhcCCCCCCEEeccCCcc------ccccCCchhcccC-CCcEEecCCCcCccccCccccccCCCCcEEEccCCccccc
Q 045291          180 PWCLANMTSLRILDVSFNQL------TGSISSSPLVHLT-SIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAE  252 (682)
Q Consensus       180 ~~~~~~l~~L~~L~L~~n~l------~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~  252 (682)
                      +.+|.++++|+.|.+..+..      ...+ |..+..++ +|+.|.+.++++. ..|..  ....+|+.|++.++.+.  
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~l-p~~~~~lp~~Lr~L~~~~~~l~-~lP~~--f~~~~L~~L~L~~s~l~--  624 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHL-PEGFDYLPPKLRLLRWDKYPLR-CMPSN--FRPENLVKLQMQGSKLE--  624 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeec-CcchhhcCcccEEEEecCCCCC-CCCCc--CCccCCcEEECcCcccc--
Confidence            34566667777776654432      1123 33344433 5666776666654 22321  23456666666666543  


Q ss_pred             ccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCC
Q 045291          253 ITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRL  332 (682)
Q Consensus       253 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  332 (682)
                                                 .++..+..+++|+.++++++.....+|.  +..+++|+.|++++|......+.
T Consensus       625 ---------------------------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~  675 (1153)
T PLN03210        625 ---------------------------KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPS  675 (1153)
T ss_pred             ---------------------------ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccch
Confidence                                       2445556788999999998876567775  56789999999998876666667


Q ss_pred             CCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCC
Q 045291          333 PIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCV  412 (682)
Q Consensus       333 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  412 (682)
                      .+..+++|+.|++++|...+.+|..+  .+++|+.|++++|......|..   .++|++|++++|.+. .+|...  .++
T Consensus       676 si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~  747 (1153)
T PLN03210        676 SIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLE  747 (1153)
T ss_pred             hhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--ccc
Confidence            78888999999999986555777655  4789999999998765555532   467899999999886 777654  478


Q ss_pred             CCCEEEccCCcCC-------CcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCC
Q 045291          413 NLNSLALSNNNLQ-------GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR  485 (682)
Q Consensus       413 ~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  485 (682)
                      +|+.|.+.++...       ...+..+..+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... ++++
T Consensus       748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s  826 (1153)
T PLN03210        748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLES  826 (1153)
T ss_pred             ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cccc
Confidence            8888888774322       1112223345789999999998877889999999999999999986555677655 7899


Q ss_pred             CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEcc
Q 045291          486 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVA  565 (682)
Q Consensus       486 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  565 (682)
                      |+.|++++|......|..   .++|+.|+|++|.++.  +|..+..+++|+.|++++|+-...+|..+..+++|+.++++
T Consensus       827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~  901 (1153)
T PLN03210        827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS  901 (1153)
T ss_pred             cCEEECCCCCcccccccc---ccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence            999999998655444432   3689999999999974  78889999999999999965544677778889999999999


Q ss_pred             CccC
Q 045291          566 YNNL  569 (682)
Q Consensus       566 ~n~l  569 (682)
                      +|.-
T Consensus       902 ~C~~  905 (1153)
T PLN03210        902 DCGA  905 (1153)
T ss_pred             CCcc
Confidence            9863

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.9e-19  Score=194.72  Aligned_cols=250  Identities=24%  Similarity=0.292  Sum_probs=187.6

Q ss_pred             CCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhh
Q 045291          281 FPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD  360 (682)
Q Consensus       281 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  360 (682)
                      +|..+.  ++|+.|++++|.++ .+|.    ..++|++|++++|+++.+..    ..++|+.|++++|.+. .+|..   
T Consensus       216 LP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~-~Lp~l---  280 (788)
T PRK15387        216 LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT-HLPAL---  280 (788)
T ss_pred             CCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeeccCCchh-hhhhc---
Confidence            454443  37888999999887 4554    35789999999998887532    2468899999999886 45542   


Q ss_pred             cCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccE
Q 045291          361 ILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKW  440 (682)
Q Consensus       361 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  440 (682)
                       +++|+.|++++|.++.. |.   .+++|++|++++|++. .+|..    ..+|+.|++++|++++.. .   ...+|+.
T Consensus       281 -p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~LP-~---lp~~Lq~  346 (788)
T PRK15387        281 -PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTSLP-T---LPSGLQE  346 (788)
T ss_pred             -hhhcCEEECcCCccccc-cc---cccccceeECCCCccc-cCCCC----cccccccccccCcccccc-c---cccccce
Confidence             45788999999988743 33   3478999999999887 56642    346888899999887633 2   2357999


Q ss_pred             EECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcC
Q 045291          441 LLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI  520 (682)
Q Consensus       441 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~  520 (682)
                      |++++|.+.+ +|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|++++ +|..   .++|+.|++++|++
T Consensus       347 LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~L  414 (788)
T PRK15387        347 LSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRL  414 (788)
T ss_pred             EecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcC
Confidence            9999999884 4432   357888999999988 45543   3578999999999985 3332   36799999999999


Q ss_pred             CCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccc
Q 045291          521 SGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWT  577 (682)
Q Consensus       521 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  577 (682)
                      ++  +|..   ..+|+.|++++|+++ .+|..+..+++|+.+++++|++++..+..+
T Consensus       415 ss--IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        415 TS--LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CC--CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            75  5543   356888999999998 678888899999999999999998766543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=6.1e-19  Score=190.79  Aligned_cols=183  Identities=26%  Similarity=0.323  Sum_probs=93.3

Q ss_pred             CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEE
Q 045291          339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA  418 (682)
Q Consensus       339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  418 (682)
                      +|+.|++++|+++ .+|..    +++|+.|++++|.+++. |..   ..+|+.|++++|.+. .+|.    ...+|+.|+
T Consensus       283 ~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~----lp~~Lq~Ld  348 (788)
T PRK15387        283 GLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPT----LPSGLQELS  348 (788)
T ss_pred             hcCEEECcCCccc-ccccc----ccccceeECCCCccccC-CCC---cccccccccccCccc-cccc----cccccceEe
Confidence            3444555555544 33321    34455555555555432 211   123445555555554 3442    123455555


Q ss_pred             ccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcC
Q 045291          419 LSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG  498 (682)
Q Consensus       419 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  498 (682)
                      +++|++++...    ..++|+.|++++|.+.. +|..   ..+|+.|++++|.+.+ +|..   .++|+.|++++|.+++
T Consensus       349 LS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        349 VSDNQLASLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS  416 (788)
T ss_pred             cCCCccCCCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC
Confidence            55555554221    12345555566555553 3322   2356666666666652 3322   2456666666666664


Q ss_pred             CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh
Q 045291          499 PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL  553 (682)
Q Consensus       499 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  553 (682)
                       +|..   ..+|+.|++++|+++.  +|..+..+++|+.|++++|++++..+..+
T Consensus       417 -IP~l---~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        417 -LPML---PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             -CCcc---hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence             2322   2346666777777653  56666666677777777777766655555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=8.2e-18  Score=183.46  Aligned_cols=246  Identities=22%  Similarity=0.361  Sum_probs=166.1

Q ss_pred             CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291          290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN  369 (682)
Q Consensus       290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  369 (682)
                      +...|+++++.++ .+|..+   .+.++.|++++|.+..+....   ..+|++|++++|.++ .+|..+   .++|+.|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENL---QGNIKTLYANSNQLT-SIPATL---PDTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCCccc-cCChhh---hccccEEE
Confidence            4567778777776 456542   246788888888877654322   247888888888876 566654   24688888


Q ss_pred             ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCc
Q 045291          370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFV  449 (682)
Q Consensus       370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  449 (682)
                      +++|.+. .+|..+.  .+|+.|++++|++. .+|..+.   ++|+.|++++|+++... ..+  .++|+.|++++|.+.
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLT  317 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccc
Confidence            8888877 3444432  46888888888887 6666442   47888888888877543 222  246788888888877


Q ss_pred             ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhc
Q 045291          450 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF  529 (682)
Q Consensus       450 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~  529 (682)
                      . +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|+++.  +|..+
T Consensus       318 ~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~--LP~~l  386 (754)
T PRK15370        318 A-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALTN--LPENL  386 (754)
T ss_pred             c-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCC--CCHhH
Confidence            4 34333  3578888888888874 554442  688888888888873 444442  578888888888874  44444


Q ss_pred             cCCCCCcEEECCCCcCCCCchhhh----hcCCCCCEEEccCccCc
Q 045291          530 SNLKQIESLDLSYNKLNGKMPHQL----VELKTLEVFSVAYNNLS  570 (682)
Q Consensus       530 ~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~  570 (682)
                      .  .+|+.|++++|++. .+|..+    ..++.+..+++.+|+++
T Consensus       387 ~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 P--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             H--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            3  36888888888887 344433    33577788888888876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.3e-18  Score=177.12  Aligned_cols=252  Identities=24%  Similarity=0.227  Sum_probs=108.9

Q ss_pred             EEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCccc----CCCCCCCCCCccEEEccCCcCCC------CCChhhhhcCC
Q 045291          294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGP----FRLPIHPHRRLRFLDVSNNNFQG------HMPVEIGDILP  363 (682)
Q Consensus       294 L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~l~  363 (682)
                      |+|..+.+.+..-..++..+..|++++++++.+...    ....+...+++++++++++.+.+      .++..+.. ++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cC
Confidence            344444444222223344445555555555554321    11122334456666666655541      11112222 55


Q ss_pred             CceEEEecCCcCCcCCCcccCCCCC---CCEEEccCCcCCCcCchh---hhhCC-CCCCEEEccCCcCCCc----ccccC
Q 045291          364 SLFSFNISTNALHGSIPSSFGNMKF---LQILDLSNNHLTGEIPEY---LAVGC-VNLNSLALSNNNLQGH----MFSRN  432 (682)
Q Consensus       364 ~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~l~~n~~~~~~~~~---~~~~~-~~L~~L~l~~n~l~~~----~~~~~  432 (682)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|.+.+.....   ....+ ++|+.|++++|.+++.    ....+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            6666666666655433333333333   666666666554211111   11123 4555555555555521    12223


Q ss_pred             CCCCCccEEECCCCcCccc----CCccccCCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCcCcCCcchhc
Q 045291          433 FNLTNLKWLLLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNHLEGPIPVEF  504 (682)
Q Consensus       433 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  504 (682)
                      ..+++|++|++++|.+.+.    ++..+...++|++|++++|.+.+.    ++..+..+++|++|++++|.+++.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            3344555555555554421    122233334555555555554422    12233344455555555555443211111


Q ss_pred             c-----CCCCCCEEEccCCcCCCC---cchhhccCCCCCcEEECCCCcCC
Q 045291          505 C-----QLDLLQILDISDNNISGR---LIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       505 ~-----~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      .     ..+.|++|++++|.++..   .....+..+++|+.+++++|+++
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            1     124455555555554310   11223333445555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=2.7e-17  Score=179.45  Aligned_cols=248  Identities=27%  Similarity=0.363  Sum_probs=192.3

Q ss_pred             CCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEE
Q 045291          314 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD  393 (682)
Q Consensus       314 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  393 (682)
                      .+...|++++++++.+.. .+  .+.++.|++++|.++ .+|..++   ++|+.|++++|.++. +|..+  .++|+.|+
T Consensus       178 ~~~~~L~L~~~~LtsLP~-~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLTTIPA-CI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcCcCCc-cc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEE
Confidence            457889999998887543 22  357999999999998 7787653   589999999999984 45444  24799999


Q ss_pred             ccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCC
Q 045291          394 LSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS  473 (682)
Q Consensus       394 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  473 (682)
                      +++|.+. .+|..+.   .+|+.|++++|++.. +|..+  .++|+.|++++|.+.. +|..+.  ++|+.|++++|.+.
T Consensus       248 Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        248 LSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             CcCCccC-cCChhHh---CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence            9999998 8887664   589999999999985 44444  3589999999999985 454432  57999999999998


Q ss_pred             CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh
Q 045291          474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL  553 (682)
Q Consensus       474 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  553 (682)
                      . +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++.  +|..+  .++|+.|++++|+++. +|..+
T Consensus       318 ~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~Lt~-LP~~l  386 (754)
T PRK15370        318 A-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV--LPETL--PPTITTLDVSRNALTN-LPENL  386 (754)
T ss_pred             c-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc--CChhh--cCCcCEEECCCCcCCC-CCHhH
Confidence            4 55433  3789999999999985 455443  799999999999984  56555  3689999999999995 55555


Q ss_pred             hcCCCCCEEEccCccCcccCCccccc----ccccCcccccCCCCCC
Q 045291          554 VELKTLEVFSVAYNNLSGEIPEWTAQ----FATFNESSYEGNIFLC  595 (682)
Q Consensus       554 ~~l~~L~~L~l~~n~l~~~~~~~~~~----~~~l~~~~~~~n~~~c  595 (682)
                      .  ++|+.|++++|++. .+|..+..    .+.+..+++.+||+..
T Consensus       387 ~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        387 P--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             H--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            4  37999999999998 56653333    3566788899998753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.4e-18  Score=176.80  Aligned_cols=274  Identities=23%  Similarity=0.241  Sum_probs=192.9

Q ss_pred             EEEcCCCCCccc-CCCCCCCCCCccEEEccCCcCCCC----CChhhhhcCCCceEEEecCCcCCc------CCCcccCCC
Q 045291          318 TLFLINDSIGGP-FRLPIHPHRRLRFLDVSNNNFQGH----MPVEIGDILPSLFSFNISTNALHG------SIPSSFGNM  386 (682)
Q Consensus       318 ~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~i~~------~~~~~~~~l  386 (682)
                      .|+|..+.+++. ....+..+..|+.|+++++.+++.    ++..+ ...++++.++++++.+.+      ..+..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            466777776632 223344567799999999988642    22222 236779999999988762      233467778


Q ss_pred             CCCCEEEccCCcCCCcCchhhhhCCC---CCCEEEccCCcCCCc----ccccCCCC-CCccEEECCCCcCccc----CCc
Q 045291          387 KFLQILDLSNNHLTGEIPEYLAVGCV---NLNSLALSNNNLQGH----MFSRNFNL-TNLKWLLLEGNRFVGE----IPQ  454 (682)
Q Consensus       387 ~~L~~L~l~~n~~~~~~~~~~~~~~~---~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~~~~~----~~~  454 (682)
                      ++|++|++++|.+.+..+..+ ..+.   +|++|++++|++.+.    ....+..+ ++|+.|++++|.+++.    .+.
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            899999999999874444333 2344   499999999998742    22334456 8999999999998742    345


Q ss_pred             cccCCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCcCcCCc----chhccCCCCCCEEEccCCcCCCCcch
Q 045291          455 SLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNHLEGPI----PVEFCQLDLLQILDISDNNISGRLIP  526 (682)
Q Consensus       455 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~~~~  526 (682)
                      .+..+++|++|++++|.+.+.    ++..+...++|++|++++|.+++..    +..+..+++|+.|++++|++++....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            667788999999999998842    3344566789999999999987543    34567789999999999998752122


Q ss_pred             hhcc----CCCCCcEEECCCCcCCC----CchhhhhcCCCCCEEEccCccCccc----CCcccccc-cccCcccccCCCC
Q 045291          527 STFS----NLKQIESLDLSYNKLNG----KMPHQLVELKTLEVFSVAYNNLSGE----IPEWTAQF-ATFNESSYEGNIF  593 (682)
Q Consensus       527 ~~~~----~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~-~~l~~~~~~~n~~  593 (682)
                      ....    ..+.|++|++++|.++.    .+...+..+++|+.+++++|.++..    .......+ ..++.+++.+|||
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            2122    24799999999999972    2345566778999999999999843    22222223 5666777777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.7e-18  Score=145.34  Aligned_cols=183  Identities=30%  Similarity=0.437  Sum_probs=138.9

Q ss_pred             CCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCE
Q 045291          385 NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEG  464 (682)
Q Consensus       385 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  464 (682)
                      .+.+.+.|.+++|+++ .+|..+. .+.+|+.|++.+|+++. .|..+..+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            4455666777777776 6666655 57777777777777764 4455667788888888877776 67888888888888


Q ss_pred             EeccCCcCCC-CchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCC
Q 045291          465 LYLNNNSLSG-KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN  543 (682)
Q Consensus       465 L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n  543 (682)
                      ||+.+|++.+ ..|..|..++.|+.|+|++|.+. .+|..++.+++|+.|.+.+|.+-+  .|..++.++.|++|++.+|
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccc
Confidence            8888888753 56778888888999999999988 777788999999999999998864  7888899999999999999


Q ss_pred             cCCCCchhhhhcCC---CCCEEEccCccCcccCCc
Q 045291          544 KLNGKMPHQLVELK---TLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       544 ~l~~~~~~~l~~l~---~L~~L~l~~n~l~~~~~~  575 (682)
                      +++. +|..++.+.   +=+.+.+.+|+|...+.+
T Consensus       184 rl~v-lppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  184 RLTV-LPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             eeee-cChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            9984 444455443   335567788888766654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=7.5e-18  Score=141.57  Aligned_cols=179  Identities=27%  Similarity=0.385  Sum_probs=147.7

Q ss_pred             CCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCee
Q 045291          410 GCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI  489 (682)
Q Consensus       410 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  489 (682)
                      .+.+.+.|.+++|+++...| .+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|++. ..|..|+.+|.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            46677888999999986544 4567889999999999987 67888999999999999999987 889999999999999


Q ss_pred             cCCCCcCcC-CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCcc
Q 045291          490 IMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN  568 (682)
Q Consensus       490 ~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  568 (682)
                      ||.+|++.. ..|..|-.++.|+.|+|++|.+.  ..|...+.+++|+.|.+++|.+. ..|..++.++.|+.|.+.+|.
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            999999875 57888888999999999999986  57888899999999999999988 678889999999999999999


Q ss_pred             CcccCCccccccccc---CcccccCCCCCC
Q 045291          569 LSGEIPEWTAQFATF---NESSYEGNIFLC  595 (682)
Q Consensus       569 l~~~~~~~~~~~~~l---~~~~~~~n~~~c  595 (682)
                      ++-.-|+ ++.+.-.   +....+.|||.-
T Consensus       185 l~vlppe-l~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  185 LTVLPPE-LANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             eeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence            9854444 4443222   234456677653

>PLN03150 hypothetical protein; Provisional

Probab=99.35  E-value=2.9e-12  Score=139.97  Aligned_cols=114  Identities=32%  Similarity=0.560  Sum_probs=97.4

Q ss_pred             CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEc
Q 045291          485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV  564 (682)
Q Consensus       485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  564 (682)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++ .+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            46788899999988888889999999999999999987 67888899999999999999999999999999999999999


Q ss_pred             cCccCcccCCccccc-ccccCcccccCCCCCCCCCC
Q 045291          565 AYNNLSGEIPEWTAQ-FATFNESSYEGNIFLCGLPL  599 (682)
Q Consensus       565 ~~n~l~~~~~~~~~~-~~~l~~~~~~~n~~~c~~~~  599 (682)
                      ++|++++.+|..+.. ...+..+++.+|+..|+.+.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            999999999876554 24556778899999998654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=8e-13  Score=128.16  Aligned_cols=185  Identities=24%  Similarity=0.266  Sum_probs=78.4

Q ss_pred             CCCceEEEecCCcCCcC--CCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCc-ccccCCCCCCc
Q 045291          362 LPSLFSFNISTNALHGS--IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH-MFSRNFNLTNL  438 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L  438 (682)
                      |++++.|+++.|-+..-  +......+|+|+.|+++.|++..-.....-..+++|+.|.++.|.++.. .......+|+|
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            44445555544444321  1122334445555555555443111111111244555555555554411 11222234555


Q ss_pred             cEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCc-hhhhcCCCCCCeecCCCCcCcCCc-chh-----ccCCCCCC
Q 045291          439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI-PRWLGNLTRLQYIIMPNNHLEGPI-PVE-----FCQLDLLQ  511 (682)
Q Consensus       439 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~  511 (682)
                      +.|++.+|...........-+..|++|+|++|++.... -.....++.|+.|+++.|.+.++- |+.     ...+++|+
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~  304 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE  304 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence            55555555322122222233445555555555544211 022344555555555555554321 111     23345566


Q ss_pred             EEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291          512 ILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       512 ~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      +|++++|+|.....-..+..+++|+.|.+..|.+.
T Consensus       305 ~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  305 YLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             eeecccCccccccccchhhccchhhhhhccccccc
Confidence            66666665543222233444455555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=1.1e-12  Score=131.24  Aligned_cols=195  Identities=29%  Similarity=0.445  Sum_probs=134.5

Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  441 (682)
                      +..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+. .+..|..|+++.|++... |..+..++ |+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLSHL-PDGLCDLP-LKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhhcC-ChhhhcCc-ceeE
Confidence            334455677777776 55666666777777788888776 6776665 577788888888887743 33444454 7778


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291          442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  521 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  521 (682)
                      .+++|+++ .+|..++....|..||.+.|.+. .+|..+.++.+|+.|.++.|.+.. .|..++.++ |..||+|+|+++
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis  224 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS  224 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee
Confidence            88888776 56666667778888888888877 566667778888888888888773 444455554 788888888887


Q ss_pred             CCcchhhccCCCCCcEEECCCCcCCCCchhhhhc---CCCCCEEEccCcc
Q 045291          522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE---LKTLEVFSVAYNN  568 (682)
Q Consensus       522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~n~  568 (682)
                        .+|-.|..|+.|++|-|.+|.+. ..|..+..   ..--++|+..-++
T Consensus       225 --~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  225 --YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             --ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence              37777888888888888888887 55554432   2233455666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=1.1e-11  Score=117.12  Aligned_cols=138  Identities=16%  Similarity=0.244  Sum_probs=104.2

Q ss_pred             CCCCCccEEECCCCcCccc----CCccccCCCCCCEEeccCCcCCC----CchhhhcCCCCCCeecCCCCcCcCC----c
Q 045291          433 FNLTNLKWLLLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLSG----KIPRWLGNLTRLQYIIMPNNHLEGP----I  500 (682)
Q Consensus       433 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~  500 (682)
                      ...+.|+.+...+|++...    +...|...+.|+.+.+..|.|..    .....|..+++|+.|||++|.++..    +
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            3567899999999987643    34567778899999999998753    2345678899999999999998743    3


Q ss_pred             chhccCCCCCCEEEccCCcCCCCcc---hhhc-cCCCCCcEEECCCCcCCCC----chhhhhcCCCCCEEEccCccCc
Q 045291          501 PVEFCQLDLLQILDISDNNISGRLI---PSTF-SNLKQIESLDLSYNKLNGK----MPHQLVELKTLEVFSVAYNNLS  570 (682)
Q Consensus       501 ~~~~~~l~~L~~L~Ls~n~~~~~~~---~~~~-~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~  570 (682)
                      ..+++.+++|+.|++++|.+...-.   ..++ ...++|+.|.+.+|.|+..    +...+...+.|..|+|++|.+.
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            4568889999999999998874211   1222 3468999999999998733    2234556789999999999994

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=4.5e-11  Score=106.30  Aligned_cols=15  Identities=27%  Similarity=0.394  Sum_probs=4.0

Q ss_pred             CCCCCcEEECCCCcC
Q 045291          531 NLKQIESLDLSYNKL  545 (682)
Q Consensus       531 ~l~~L~~L~l~~n~l  545 (682)
                      .+++|+.|++.+|++
T Consensus       111 ~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen  111 SLPKLRVLSLEGNPV  125 (175)
T ss_dssp             G-TT--EEE-TT-GG
T ss_pred             cCCCcceeeccCCcc
Confidence            334444444444433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=1.3e-11  Score=113.91  Aligned_cols=130  Identities=28%  Similarity=0.299  Sum_probs=62.8

Q ss_pred             CCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecC
Q 045291          412 VNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIM  491 (682)
Q Consensus       412 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  491 (682)
                      ..|+++|+++|.++. +....+-.|.++.|+++.|.+...  ..+..+++|+.||+++|.+. ....+=..+-++++|.|
T Consensus       284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            344555555554442 222333445555555555555432  12444555555555555554 33333344455555555


Q ss_pred             CCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291          492 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       492 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  547 (682)
                      ++|.|.+.  +.+..+-+|..||+++|+|..-.....++++|.|+.+.|.+|++.+
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            55555422  2334445555555555555431222345555555555555555553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.3e-11  Score=119.80  Aligned_cols=212  Identities=24%  Similarity=0.213  Sum_probs=156.6

Q ss_pred             cCCCceEEEecCCcCCcCCC-cccCCCCCCCEEEccCCcCCCcC-chhhhhCCCCCCEEEccCCcCCCccccc-CCCCCC
Q 045291          361 ILPSLFSFNISTNALHGSIP-SSFGNMKFLQILDLSNNHLTGEI-PEYLAVGCVNLNSLALSNNNLQGHMFSR-NFNLTN  437 (682)
Q Consensus       361 ~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~  437 (682)
                      .+.+|+++.+.++.+..... +....+++++.||+++|-+..-. -..+...+++|+.|+++.|++....... -..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            46788888898887762221 46678999999999999775211 1244557999999999999887433221 125788


Q ss_pred             ccEEECCCCcCccc-CCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcc-hhccCCCCCCEEEc
Q 045291          438 LKWLLLEGNRFVGE-IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDLLQILDI  515 (682)
Q Consensus       438 L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L  515 (682)
                      |+.|.++.|.++.. +......+|+|+.|++..|...........-+..|++|+|++|++.+... .....++.|..|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            99999999998732 33455678999999999995332333344567889999999999875432 34677899999999


Q ss_pred             cCCcCCCCcchhh-----ccCCCCCcEEECCCCcCCCCch-hhhhcCCCCCEEEccCccCccc
Q 045291          516 SDNNISGRLIPST-----FSNLKQIESLDLSYNKLNGKMP-HQLVELKTLEVFSVAYNNLSGE  572 (682)
Q Consensus       516 s~n~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~  572 (682)
                      +.+.+++...|++     -..+++|+.|++..|++..... ..+..+++|+.|.+..|++...
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            9999986444544     4678999999999999974322 4566788899999999998753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=4.8e-12  Score=126.75  Aligned_cols=196  Identities=27%  Similarity=0.389  Sum_probs=159.9

Q ss_pred             CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCC
Q 045291          336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLN  415 (682)
Q Consensus       336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  415 (682)
                      .+..-...|++.|++. .+|..+.. +-.|+.+.+..|.+. .+|..+..+..|+.++++.|+++ .+|..++  .--|+
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk  146 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK  146 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence            3445567899999997 88887766 778999999999988 66778889999999999999998 8888887  45699


Q ss_pred             EEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCc
Q 045291          416 SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH  495 (682)
Q Consensus       416 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  495 (682)
                      .|.+++|+++. .|..++..+.|..||.+.|.+. .+|..+.++.+|+.|.+..|++. .+|..+. .-.|..||++.|+
T Consensus       147 vli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk  222 (722)
T KOG0532|consen  147 VLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK  222 (722)
T ss_pred             eEEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence            99999999985 4555668899999999999987 57788899999999999999998 5566666 4468899999999


Q ss_pred             CcCCcchhccCCCCCCEEEccCCcCCCCcchhhcc---CCCCCcEEECCCCc
Q 045291          496 LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFS---NLKQIESLDLSYNK  544 (682)
Q Consensus       496 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~---~l~~L~~L~l~~n~  544 (682)
                      ++ .+|..|..++.|++|.|.+|++.+  +|..+.   ..-=-+.|+..-|+
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLqS--PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQS--PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCCC--ChHHHHhccceeeeeeecchhcc
Confidence            99 788899999999999999999985  554332   12223567777664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=2e-11  Score=115.49  Aligned_cols=246  Identities=17%  Similarity=0.129  Sum_probs=166.8

Q ss_pred             CCCCCcEEeCCCCCcC--CCCccccccCCCCCCCEEecCCCCCCCccccCcc-------ccCCCCCCCEEeCCCCCCCcc
Q 045291            3 GLRKLKSFGLSGVGIR--DGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQ-------ELHNFTNLEYLTLDESSLHIS   73 (682)
Q Consensus         3 ~l~~L~~L~L~~~~~~--~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-------~l~~l~~L~~L~L~~n~~~~~   73 (682)
                      .+..+++|+|++|.++  ....+...+.+.+.|+.-++|..--.......+.       ++..+++|++|+||.|-+.-.
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            4567889999999874  1124456677778888888887633222111122       345677899999998887644


Q ss_pred             hhHH----HhhccCcceeeccCccccCc---c--------cCCCCCCCCCCCceeecCCCcccccc--chhHHHhhcCCC
Q 045291           74 LLQS----IASLFPSLKNLSISYCEVNG---V--------LRGQGFPSFKSLEHLHMSFAPIALNT--SFLQIIGESMPS  136 (682)
Q Consensus        74 ~~~~----~~~l~~L~~l~~~~~~~~~~---~--------~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~~l~~  136 (682)
                      .+..    +.++..|++|.+.+|-.--.   .        ......+.-+.|+++..+.|+..-.+  .+...+.. .+.
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~-~~~  186 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS-HPT  186 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh-ccc
Confidence            4333    45567788887776643110   0        01112456689999999986653322  23344444 899


Q ss_pred             CcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc----cCchhhcCCCCCCEEeccCCccccccCCch----h
Q 045291          137 LKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG----SLPWCLANMTSLRILDVSFNQLTGSISSSP----L  208 (682)
Q Consensus       137 L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~----~  208 (682)
                      |+.+.+..|.+......+...++..|++|++|+|+.|.++.    .+...+..+++|++|++++|.+...- ...    +
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G-a~a~~~al  265 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG-AIAFVDAL  265 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc-HHHHHHHH
Confidence            99999999999544444555688999999999999998875    34567778899999999999887432 222    2


Q ss_pred             -cccCCCcEEecCCCcCcccc---CccccccCCCCcEEEccCCccc
Q 045291          209 -VHLTSIEMLILSDNHFQIPI---SLEPLFNHSRLKIFYADNNELN  250 (682)
Q Consensus       209 -~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~~~~~  250 (682)
                       ...+.|+.|.+.+|.++...   -.......+.|..|.+++|.+.
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence             23689999999999987321   1123455788999999999883

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.3e-10  Score=121.60  Aligned_cols=198  Identities=35%  Similarity=0.466  Sum_probs=105.6

Q ss_pred             EEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCC-CCCEEEccCCcCCCcCchhhhhCCCCCCEEEcc
Q 045291          342 FLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMK-FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS  420 (682)
Q Consensus       342 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  420 (682)
                      .++...+.+... ...+.. ++.++.|++.+|.++... .....+. +|+.|++++|++. .++.... .+++|+.|+++
T Consensus        97 ~l~~~~~~~~~~-~~~~~~-~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLE-LTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccccC-chhhhc-ccceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence            466666655312 222222 456777777777766433 2333442 6777777777765 5543332 46666666666


Q ss_pred             CCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCc
Q 045291          421 NNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI  500 (682)
Q Consensus       421 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  500 (682)
                      +|++....+. ....++|+.|++++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .
T Consensus       172 ~N~l~~l~~~-~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~  247 (394)
T COG4886         172 FNDLSDLPKL-LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L  247 (394)
T ss_pred             Cchhhhhhhh-hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence            6666643332 114556666666666665 23333333444666666666433 333445555555555555555542 2


Q ss_pred             chhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchh
Q 045291          501 PVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH  551 (682)
Q Consensus       501 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  551 (682)
                      +..+..+++++.|++++|+++.  ++. ++.+.+++.|++++|.+....+.
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~--i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISS--ISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cchhccccccceeccccccccc--ccc-ccccCccCEEeccCccccccchh
Confidence            3444555556666666666553  222 55555666666666655544443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=3e-10  Score=101.06  Aligned_cols=132  Identities=21%  Similarity=0.241  Sum_probs=50.9

Q ss_pred             CCCCCcEEeCCCCCcCCCCccccccC-CCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhc
Q 045291            3 GLRKLKSFGLSGVGIRDGSKLLQSMG-SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASL   81 (682)
Q Consensus         3 ~l~~L~~L~L~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l   81 (682)
                      +..++|+|+|.+|.|   ..+ +.++ .+.+|+.||||+|.|+.+     ..+..+++|+.|++++|.++.........+
T Consensus        17 n~~~~~~L~L~~n~I---~~I-e~L~~~l~~L~~L~Ls~N~I~~l-----~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l   87 (175)
T PF14580_consen   17 NPVKLRELNLRGNQI---STI-ENLGATLDKLEVLDLSNNQITKL-----EGLPGLPRLKTLDLSNNRISSISEGLDKNL   87 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred             ccccccccccccccc---ccc-cchhhhhcCCCEEECCCCCCccc-----cCccChhhhhhcccCCCCCCccccchHHhC
Confidence            455789999999998   323 3455 578999999999999986     367889999999999999985433323467


Q ss_pred             cCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccC
Q 045291           82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG  144 (682)
Q Consensus        82 ~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~  144 (682)
                      +.|+++.+.+|.... +.+-..++.+++|++|++.+||+.-....-..+...+|+|+.||-..
T Consensus        88 p~L~~L~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   88 PNLQELYLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             TT--EEE-TTS---S-CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCEEECcCCcCCC-hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            888888887776532 33333477788888888888776544333333444488888887644

>PLN03150 hypothetical protein; Provisional

Probab=99.05  E-value=4.9e-10  Score=122.59  Aligned_cols=114  Identities=32%  Similarity=0.483  Sum_probs=103.9

Q ss_pred             CCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEEC
Q 045291          461 SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDL  540 (682)
Q Consensus       461 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l  540 (682)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++ .+|..++.+++|+.|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEEC
Confidence            37889999999999999999999999999999999999999999999999999999999998 78999999999999999


Q ss_pred             CCCcCCCCchhhhhcC-CCCCEEEccCccCcccCCc
Q 045291          541 SYNKLNGKMPHQLVEL-KTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       541 ~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~  575 (682)
                      ++|++++.+|..+... .++..+++.+|+..|..|.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            9999999999988764 4678899999998876554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=3.8e-10  Score=118.16  Aligned_cols=178  Identities=33%  Similarity=0.458  Sum_probs=85.2

Q ss_pred             CCCCEEEccCCcCCCcCchhhhhCC-CCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEE
Q 045291          387 KFLQILDLSNNHLTGEIPEYLAVGC-VNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGL  465 (682)
Q Consensus       387 ~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  465 (682)
                      +.++.|++.+|.++ .++.... .. .+|+.|++++|++.... ..+..+++|+.|++++|++.. ++......++|+.|
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCccccc-cchhhcccccccccchhhhh-hhhhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence            44555555555554 4444332 12 15555555555555321 233345555555555555542 23222245555555


Q ss_pred             eccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcC
Q 045291          466 YLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL  545 (682)
Q Consensus       466 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  545 (682)
                      ++++|.+. .+|.....+..|+++.+++|.+. ..+..+..+.++..+.+++|++..  .+..++.+++++.|++++|.+
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee--ccchhccccccceeccccccc
Confidence            55555554 33333333344555555555322 223334445555555555555542  244445555555555555555


Q ss_pred             CCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          546 NGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       546 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      +....  +..+.+++.+++++|.++...|
T Consensus       268 ~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         268 SSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccccc--ccccCccCEEeccCccccccch
Confidence            53322  4455555555555555554333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=5.4e-11  Score=109.78  Aligned_cols=130  Identities=26%  Similarity=0.333  Sum_probs=82.5

Q ss_pred             CCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEE
Q 045291          435 LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD  514 (682)
Q Consensus       435 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  514 (682)
                      -..|+++|+++|.++ .+..++.-.|.++.|+++.|.+. .+. .++.+++|+.|||++|.++... ..-..+-+.+.|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence            345777777777766 45555666677777777777775 222 2666777777777777766332 2234556677777


Q ss_pred             ccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch-hhhhcCCCCCEEEccCccCcc
Q 045291          515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP-HQLVELKTLEVFSVAYNNLSG  571 (682)
Q Consensus       515 Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~  571 (682)
                      |++|.+..   -..++.+-+|..||+++|+|..... ..++++|-|+++.+.+||+.+
T Consensus       359 La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            77777642   3455666677777777777764432 456667777777777777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=1.9e-09  Score=78.63  Aligned_cols=57  Identities=40%  Similarity=0.603  Sum_probs=22.6

Q ss_pred             CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCC
Q 045291          486 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN  543 (682)
Q Consensus       486 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n  543 (682)
                      |++|++++|+++.+.+..|.++++|++|++++|+++. ..+.+|.++++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCC
Confidence            3334444444433333334444444444444444432 33333444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=2.4e-09  Score=78.12  Aligned_cols=61  Identities=38%  Similarity=0.602  Sum_probs=56.5

Q ss_pred             CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccC
Q 045291          508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL  569 (682)
Q Consensus       508 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  569 (682)
                      |+|++|++++|+++. ..+.+|.++++|++|++++|+++...++.|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE-ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            579999999999985 6678999999999999999999988889999999999999999975

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=6.2e-09  Score=116.38  Aligned_cols=45  Identities=16%  Similarity=0.176  Sum_probs=24.2

Q ss_pred             CcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCc
Q 045291          282 PKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG  327 (682)
Q Consensus       282 ~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  327 (682)
                      +.|....++|+.+.+..+.....+.+. ...+..++.+.+..+.+.
T Consensus       763 l~~~~f~~~L~~l~l~~~~~~e~~i~~-~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  763 LTWLLFAPHLTSLSLVSCRLLEDIIPK-LKALLELKELILPFNKLE  807 (889)
T ss_pred             cchhhccCcccEEEEecccccccCCCH-HHHhhhcccEEecccccc
Confidence            334445677888888877655443333 344555554444443333

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=5.4e-10  Score=117.01  Aligned_cols=246  Identities=23%  Similarity=0.231  Sum_probs=131.6

Q ss_pred             cCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCE
Q 045291          312 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQI  391 (682)
Q Consensus       312 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  391 (682)
                      .+..++.+.+..|.+... ...+..+.+++.|++.+|.+.. +...+ ..+++|+.|++++|.|+...  .+..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~-i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEK-IENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhh-cccch-hhhhcchheecccccccccc--chhhccchhh
Confidence            344555555666655541 1224455666777777776652 22211 22566777777777666443  2344555666


Q ss_pred             EEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCC
Q 045291          392 LDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN  470 (682)
Q Consensus       392 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  470 (682)
                      |++++|.+. .+...-  .+..|+.+++++|++..... . ...+.+++.+++.+|.+...  ..+..+..+..+++..|
T Consensus       145 L~l~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  145 LNLSGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             heeccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence            677777665 333321  25666666666666664433 1 23556666666666665432  22233334444456666


Q ss_pred             cCCCCchhhhcCCCC--CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCC
Q 045291          471 SLSGKIPRWLGNLTR--LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK  548 (682)
Q Consensus       471 ~~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  548 (682)
                      .+...-+  +..+..  |+.+++++|++... +..+..+..+..|++.+|++..   -..+...+.+..+....|++...
T Consensus       219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~  292 (414)
T KOG0531|consen  219 KISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISN---LEGLERLPKLSELWLNDNKLALS  292 (414)
T ss_pred             cceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccc---cccccccchHHHhccCcchhcch
Confidence            5542211  122222  66777777776632 2445556667777777776653   22344555666666666665522


Q ss_pred             ---chhh-hhcCCCCCEEEccCccCcccCC
Q 045291          549 ---MPHQ-LVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       549 ---~~~~-l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                         .... ....+.+..+.+.+|+.....+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  293 EAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hhhhccccccccccccccccccCccccccc
Confidence               1111 3345666677777777665444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=6.2e-09  Score=116.41  Aligned_cols=161  Identities=26%  Similarity=0.292  Sum_probs=99.8

Q ss_pred             CCCCCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhh
Q 045291            1 YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIAS   80 (682)
Q Consensus         1 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~   80 (682)
                      |..++.|++|||++|.-  ..++|..++.+-+|+||||+.+.|+.+    |..+++++.|.+|++..+......+.....
T Consensus       567 f~~m~~LrVLDLs~~~~--l~~LP~~I~~Li~LryL~L~~t~I~~L----P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~  640 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSS--LSKLPSSIGELVHLRYLDLSDTGISHL----PSGLGNLKKLIYLNLEVTGRLESIPGILLE  640 (889)
T ss_pred             HhhCcceEEEECCCCCc--cCcCChHHhhhhhhhcccccCCCcccc----chHHHHHHhhheeccccccccccccchhhh
Confidence            45688888888888765  578888888888888888888888877    788888888888888887765555666666


Q ss_pred             ccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCc----EEEccCCCCCCCCCCccc
Q 045291           81 LFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLK----YLSLSGSILGTNSSRILD  156 (682)
Q Consensus        81 l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~----~L~L~~~~l~~~~~~i~~  156 (682)
                      +.+|+++.+...........-..+.++.+|+.+....  ...  .+...+.. ++.|+    .+.+.++....    .. 
T Consensus       641 L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~--~s~--~~~e~l~~-~~~L~~~~~~l~~~~~~~~~----~~-  710 (889)
T KOG4658|consen  641 LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI--SSV--LLLEDLLG-MTRLRSLLQSLSIEGCSKRT----LI-  710 (889)
T ss_pred             cccccEEEeeccccccchhhHHhhhcccchhhheeec--chh--HhHhhhhh-hHHHHHHhHhhhhcccccce----ee-
Confidence            8888888776554211111100144555555555533  111  11111111 23322    22322222211    22 


Q ss_pred             ccccCCCCCCEEEccCCCCcc
Q 045291          157 QGLCSLVHLQELRMADNDLRG  177 (682)
Q Consensus       157 ~~l~~l~~L~~L~L~~n~l~~  177 (682)
                      ..+..+.+|+.|.+.++.+..
T Consensus       711 ~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  711 SSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             cccccccCcceEEEEcCCCch
Confidence            267778888888888887753

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=1.6e-09  Score=113.46  Aligned_cols=224  Identities=25%  Similarity=0.253  Sum_probs=104.2

Q ss_pred             hcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCC
Q 045291          311 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ  390 (682)
Q Consensus       311 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  390 (682)
                      ..+.+++.+++.+|.+..+... +..+++|+.|++++|.|+...+-.   .++.|+.|++++|.|....  .+..++.|+
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L~~L~l~~N~i~~~~--~~~~l~~L~  165 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLS---TLTLLKELNLSGNLISDIS--GLESLKSLK  165 (414)
T ss_pred             ccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccchh---hccchhhheeccCcchhcc--CCccchhhh
Confidence            3455566666666665553321 344556666666666655322221   1444666666666655321  233455566


Q ss_pred             EEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCC--CCCEEecc
Q 045291          391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCS--SLEGLYLN  468 (682)
Q Consensus       391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~  468 (682)
                      .+++++|.+. .+.......+.+++.+.+.+|.+.....  +..+..+..+++..|.+...-+  +..+.  .|+.++++
T Consensus       166 ~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~  240 (414)
T KOG0531|consen  166 LLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLS  240 (414)
T ss_pred             cccCCcchhh-hhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcc
Confidence            6666666554 3333101245556666666665543221  1123333334555555543211  11112  25566666


Q ss_pred             CCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC--cch-hhccCCCCCcEEECCCCcC
Q 045291          469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR--LIP-STFSNLKQIESLDLSYNKL  545 (682)
Q Consensus       469 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~--~~~-~~~~~l~~L~~L~l~~n~l  545 (682)
                      +|++. ..+..+..+..+..|++.+|++....  .+...+.+..+....|++...  ... ......+.++...+..|.+
T Consensus       241 ~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  241 GNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             cCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence            66654 33234445555566666665554321  123344455555555554310  001 1133445555566666555


Q ss_pred             CCC
Q 045291          546 NGK  548 (682)
Q Consensus       546 ~~~  548 (682)
                      ...
T Consensus       318 ~~~  320 (414)
T KOG0531|consen  318 RKI  320 (414)
T ss_pred             ccc
Confidence            543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=2.9e-08  Score=92.10  Aligned_cols=86  Identities=24%  Similarity=0.286  Sum_probs=56.0

Q ss_pred             CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCcccc-CCCCCCCEEeCCCCCCCcchhH-HHhhc
Q 045291            4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL-HNFTNLEYLTLDESSLHISLLQ-SIASL   81 (682)
Q Consensus         4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~-~~~~l   81 (682)
                      ++.++++||.+|.|+|-.++...+.++|+|++||||.|.+...    ...+ --.++|++|-|.+..+.-...+ .+..+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----cccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            4567788888888865556666777888888888888877654    3333 2466788888877776543322 23445


Q ss_pred             cCcceeeccCcc
Q 045291           82 FPSLKNLSISYC   93 (682)
Q Consensus        82 ~~L~~l~~~~~~   93 (682)
                      +.++++.++.|+
T Consensus       146 P~vtelHmS~N~  157 (418)
T KOG2982|consen  146 PKVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhhccch
Confidence            555555555553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.55  E-value=3.6e-09  Score=109.37  Aligned_cols=198  Identities=23%  Similarity=0.252  Sum_probs=120.3

Q ss_pred             CCCCCEEEccCCcCCCcC-chhhhhCCCCCCEEEccCCcCCCcccccCCCC-CCccEEECCCCcCc----------ccCC
Q 045291          386 MKFLQILDLSNNHLTGEI-PEYLAVGCVNLNSLALSNNNLQGHMFSRNFNL-TNLKWLLLEGNRFV----------GEIP  453 (682)
Q Consensus       386 l~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~----------~~~~  453 (682)
                      +++++.+.+-.-.-.+.. |-.+| .+.+|++|.+.++.+...  ..+..+ ..|+.|.- .|.+.          +.+.
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~  158 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDIS  158 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceec-cccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccc
Confidence            344455544332221122 44555 578999999999887631  111111 12333322 22221          0111


Q ss_pred             ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh-hccCC
Q 045291          454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS-TFSNL  532 (682)
Q Consensus       454 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~-~~~~l  532 (682)
                      .++ .+-.|...+.+.|.+. .+...++-++.|+.|+|++|++++..  .+..++.|+.|||++|.+..  +|. .-.++
T Consensus       159 ns~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc  232 (1096)
T KOG1859|consen  159 NSP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH--VPQLSMVGC  232 (1096)
T ss_pred             cch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc--ccccchhhh
Confidence            111 1345677778888876 66777778888888888888887553  67778888888888888874  332 22334


Q ss_pred             CCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC-cccccccccCcccccCCCCCCC
Q 045291          533 KQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP-EWTAQFATFNESSYEGNIFLCG  596 (682)
Q Consensus       533 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~~~~~~n~~~c~  596 (682)
                      . |+.|.+++|.++..  .++.++.+|+.||+++|-+.+.-. ..+..+..+..+.++|||..|.
T Consensus       233 ~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  233 K-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             h-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            3 88888888888743  456778888888888887764211 1133456677788888887774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=2.4e-09  Score=110.69  Aligned_cols=199  Identities=27%  Similarity=0.254  Sum_probs=94.9

Q ss_pred             CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhc---
Q 045291            5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASL---   81 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l---   81 (682)
                      +++++|.+-+..-.+... |-.+..|..|++|.|.++.++....  ...+.  ..|+.|. -+|+++ .+-..+..+   
T Consensus        84 qkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~G--L~~lr--~qLe~LI-C~~Sl~-Al~~v~ascggd  156 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKG--LQELR--HQLEKLI-CHNSLD-ALRHVFASCGGD  156 (1096)
T ss_pred             hhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhh--hHHHH--Hhhhhhh-hhccHH-HHHHHHHHhccc
Confidence            455566665554322122 6667778888888888887765410  11111  1233331 122221 111111111   


Q ss_pred             -------cCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCc
Q 045291           82 -------FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRI  154 (682)
Q Consensus        82 -------~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i  154 (682)
                             -+|.....+.|.. ..+  +.++.-++.|+.|+|+.|..  ..  .+.+.. ++.|++|||+.|.+..    +
T Consensus       157 ~~ns~~Wn~L~~a~fsyN~L-~~m--D~SLqll~ale~LnLshNk~--~~--v~~Lr~-l~~LkhLDlsyN~L~~----v  224 (1096)
T KOG1859|consen  157 ISNSPVWNKLATASFSYNRL-VLM--DESLQLLPALESLNLSHNKF--TK--VDNLRR-LPKLKHLDLSYNCLRH----V  224 (1096)
T ss_pred             cccchhhhhHhhhhcchhhH-HhH--HHHHHHHHHhhhhccchhhh--hh--hHHHHh-cccccccccccchhcc----c
Confidence                   0122222222222 111  22355556666666666332  11  123333 6666666666666644    4


Q ss_pred             ccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCc
Q 045291          155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ  225 (682)
Q Consensus       155 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  225 (682)
                      |.-....|+ |+.|++++|.++..  ..+.++.+|+.||+++|-|++.-.-..++.+..|+.|+|.+|++-
T Consensus       225 p~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  225 PQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            433333443 66666666665522  235556666666666666654322234555666666666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=2.1e-08  Score=92.95  Aligned_cols=209  Identities=16%  Similarity=0.146  Sum_probs=108.2

Q ss_pred             CccEEEccCCcCCCCCC-hhhhhcCCCceEEEecCCcCCc--CCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCC
Q 045291          339 RLRFLDVSNNNFQGHMP-VEIGDILPSLFSFNISTNALHG--SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLN  415 (682)
Q Consensus       339 ~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  415 (682)
                      .++-|.+.++.|...-. ..+...+..++++|+..|.|+.  .+...+.++|.|++|+++.|++...+...- ....+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceE
Confidence            34455555555542222 1233446677777777777762  233445677777788887777763332221 2456777


Q ss_pred             EEEccCCcCCC-cccccCCCCCCccEEECCCCcCccc--CCccccCC-CCCCEEeccCCcCCC--CchhhhcCCCCCCee
Q 045291          416 SLALSNNNLQG-HMFSRNFNLTNLKWLLLEGNRFVGE--IPQSLSKC-SSLEGLYLNNNSLSG--KIPRWLGNLTRLQYI  489 (682)
Q Consensus       416 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l-~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L  489 (682)
                      .|.+.+..+.- .....+..+|.++.|.++.|.....  ........ +.++++....|...-  ..-..-.-.|++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            77777665542 2223344577777777777754321  11111111 244455554443210  000011223556666


Q ss_pred             cCCCCcCcCCcc-hhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCC
Q 045291          490 IMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK  548 (682)
Q Consensus       490 ~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  548 (682)
                      .+..|.+..... ..+..++.+-.|+|+.|+|.+...-+.+.++++|..|.++++++...
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            666665554322 23444555556666666665433335556666666666666666533

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.9e-09  Score=99.83  Aligned_cols=162  Identities=20%  Similarity=0.150  Sum_probs=79.4

Q ss_pred             CCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCc
Q 045291           32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLE  111 (682)
Q Consensus        32 ~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~  111 (682)
                      +|++||||...|+....  ..-++.|.+|+.|++.++.+.+.+...+.+...|+.++++.++-.++......+.+|+.|.
T Consensus       186 Rlq~lDLS~s~it~stl--~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTL--HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHH--HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            47777777776654310  1245667777777777777776666666666666666666665544333222345566666


Q ss_pred             eeecCCCccccccchhHH-HhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCC-CcccCchhhcCCCCC
Q 045291          112 HLHMSFAPIALNTSFLQI-IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADND-LRGSLPWCLANMTSL  189 (682)
Q Consensus       112 ~L~l~~~~~~~~~~~~~~-l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  189 (682)
                      .|++++  +...+..... +..--++|+.|+++++.-.-....+.. -...|++|.+|||+.|. ++......|.+++.|
T Consensus       264 ~LNlsW--c~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  264 ELNLSW--CFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hcCchH--hhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            666665  3322222111 111123555555555432000000110 11345555555555442 222222334445555


Q ss_pred             CEEeccCCc
Q 045291          190 RILDVSFNQ  198 (682)
Q Consensus       190 ~~L~L~~n~  198 (682)
                      ++|.++.|.
T Consensus       341 ~~lSlsRCY  349 (419)
T KOG2120|consen  341 QHLSLSRCY  349 (419)
T ss_pred             eeeehhhhc
Confidence            555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=7.7e-09  Score=95.82  Aligned_cols=180  Identities=23%  Similarity=0.185  Sum_probs=123.2

Q ss_pred             CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCc-CCCCCChhhhhcCCCceEE
Q 045291          290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN-FQGHMPVEIGDILPSLFSF  368 (682)
Q Consensus       290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L  368 (682)
                      .++.+|++...++..--..++..|.+|+.+.++++.+.+.....+....+|+.|+++.+. ++..-...++..++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            478899999888766566678889999999999999988777777888899999999874 3322234456668889999


Q ss_pred             EecCCcCCcCCCc-ccC-CCCCCCEEEccCCcCC--CcCchhhhhCCCCCCEEEccCCc-CCCcccccCCCCCCccEEEC
Q 045291          369 NISTNALHGSIPS-SFG-NMKFLQILDLSNNHLT--GEIPEYLAVGCVNLNSLALSNNN-LQGHMFSRNFNLTNLKWLLL  443 (682)
Q Consensus       369 ~l~~n~i~~~~~~-~~~-~l~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  443 (682)
                      +++-|.+...... ... --++|+.|+++|+.-.  ..--..+...+++|..||++.|. ++......|..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            9998876533211 111 1256888888886422  11122334468888888888763 45445556667778888888


Q ss_pred             CCCcCcccCCcc---ccCCCCCCEEeccCCc
Q 045291          444 EGNRFVGEIPQS---LSKCSSLEGLYLNNNS  471 (682)
Q Consensus       444 ~~n~~~~~~~~~---~~~l~~L~~L~l~~n~  471 (682)
                      +.|-.  +.|..   +...++|.+|++-++-
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            77753  44543   3455777777776654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=8.1e-08  Score=87.97  Aligned_cols=105  Identities=21%  Similarity=0.261  Sum_probs=63.5

Q ss_pred             ccccCCCCCCCEEecCCCCCCCccccCcc-ccCCCCCCCEEeCCCCCCC---cchhHHHhhccCcceeeccCccccCccc
Q 045291           24 LQSMGSFPSLNTLDLSYNNFTDIAITTTQ-ELHNFTNLEYLTLDESSLH---ISLLQSIASLFPSLKNLSISYCEVNGVL   99 (682)
Q Consensus        24 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~   99 (682)
                      ...+..+..++.+|||+|.|....+.... -+.+-.+|+..+++.-...   ..+++.+.-+                .+
T Consensus        23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~L----------------l~   86 (388)
T COG5238          23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVML----------------LK   86 (388)
T ss_pred             HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHH----------------HH
Confidence            34455577888888888888765321111 3455677777776643221   1222222111                11


Q ss_pred             CCCCCCCCCCCceeecCCCccccccchhHHHh---hcCCCCcEEEccCCCCCC
Q 045291          100 RGQGFPSFKSLEHLHMSFAPIALNTSFLQIIG---ESMPSLKYLSLSGSILGT  149 (682)
Q Consensus       100 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~---~~l~~L~~L~L~~~~l~~  149 (682)
                         ++.+||+|+..+||.  +++...+|+.+.   ++-+.|.+|.+++|.++.
T Consensus        87 ---aLlkcp~l~~v~LSD--NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238          87 ---ALLKCPRLQKVDLSD--NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             ---HHhcCCcceeeeccc--cccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence               267889999999998  566555554432   237789999999888855

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.29  E-value=7.1e-08  Score=78.97  Aligned_cols=84  Identities=18%  Similarity=0.282  Sum_probs=39.0

Q ss_pred             CCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEE
Q 045291          460 SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLD  539 (682)
Q Consensus       460 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~  539 (682)
                      ..|...++++|.+....+..-...+..+.+++++|.|+ ..|..+..++.|+.|+++.|++..  .|..+..+.++-.|+
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc--chHHHHHHHhHHHhc
Confidence            34444455555554222222223334555555555555 223335555555555555555542  344444455555555


Q ss_pred             CCCCcCC
Q 045291          540 LSYNKLN  546 (682)
Q Consensus       540 l~~n~l~  546 (682)
                      ..+|.+.
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            5555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.23  E-value=1.3e-07  Score=77.47  Aligned_cols=132  Identities=20%  Similarity=0.214  Sum_probs=99.3

Q ss_pred             CCCEEeccCCcCCCCchh---hhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcE
Q 045291          461 SLEGLYLNNNSLSGKIPR---WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIES  537 (682)
Q Consensus       461 ~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~  537 (682)
                      .+..+++++|++. -+++   .+.....|+..+|++|.+.+..+..-...+..+.|++++|.|+.  +|..+..+++|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhh
Confidence            4566788888765 3343   34556778888999999996666655667789999999999985  7888999999999


Q ss_pred             EECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccC-cccccCCCCCCCCC
Q 045291          538 LDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN-ESSYEGNIFLCGLP  598 (682)
Q Consensus       538 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~~~~~~n~~~c~~~  598 (682)
                      |+++.|++. ..|+.+..+.++..|+..+|... .+|.. ...++.. ...+..+||.-+|+
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d-l~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD-LFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH-HhccccHHHHHhcCCcccccCc
Confidence            999999999 67888888999999999999887 45542 2223322 23456667666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.13  E-value=2.9e-07  Score=89.73  Aligned_cols=234  Identities=20%  Similarity=0.138  Sum_probs=121.7

Q ss_pred             CCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCC-CCCccccCcccc-CCCCCCCEEeCCCCC-CCcchhHHH-hhc
Q 045291            6 KLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNN-FTDIAITTTQEL-HNFTNLEYLTLDESS-LHISLLQSI-ASL   81 (682)
Q Consensus         6 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l-~~l~~L~~L~L~~n~-~~~~~~~~~-~~l   81 (682)
                      .||+|.++++.--....+-.....+|++++|++.++. +++.   ...++ .++.+|++|++..|. ++......+ ..+
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~---s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS---SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH---HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            4677777776431122333445678888888888775 2222   12223 357788888887743 444333322 456


Q ss_pred             cCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCccccc---
Q 045291           82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQG---  158 (682)
Q Consensus        82 ~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~---  158 (682)
                      ++|.++.++++..++.-.....+.+++.++.+.+.+|- .............+..+..+++..|..      +.+.+   
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~-e~~le~l~~~~~~~~~i~~lnl~~c~~------lTD~~~~~  288 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL-ELELEALLKAAAYCLEILKLNLQHCNQ------LTDEDLWL  288 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc-cccHHHHHHHhccChHhhccchhhhcc------ccchHHHH
Confidence            77777777777766553333335566667777666531 111111112222255566666666644      11111   


Q ss_pred             -ccCCCCCCEEEccCCCC-cccCchhh-cCCCCCCEEeccCCccccccCCchh-cccCCCcEEecCCCcCccccCcc-cc
Q 045291          159 -LCSLVHLQELRMADNDL-RGSLPWCL-ANMTSLRILDVSFNQLTGSISSSPL-VHLTSIEMLILSDNHFQIPISLE-PL  233 (682)
Q Consensus       159 -l~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~  233 (682)
                       -..+..|++|+.+++.- ++..-..+ .++++|+.|-+++++--+......+ .+.+.|+.+++..+.......+. .-
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence             13456777777776543 22222233 3567777777777752112112222 34566777777666543221111 12


Q ss_pred             ccCCCCcEEEccCCcc
Q 045291          234 FNHSRLKIFYADNNEL  249 (682)
Q Consensus       234 ~~~~~L~~L~l~~~~~  249 (682)
                      .+++.|+.+.++.+..
T Consensus       369 ~~C~~lr~lslshce~  384 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCEL  384 (483)
T ss_pred             cCCchhccCChhhhhh
Confidence            3456666666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.09  E-value=1.9e-07  Score=91.06  Aligned_cols=210  Identities=20%  Similarity=0.145  Sum_probs=90.0

Q ss_pred             ccCCCCCEEEcCCCC-CcCcCchHHHhcCCCCcEEEcCCCC-CcccCCC-CCCCCCCccEEEccCCc-CCCCCChhhhhc
Q 045291          286 YHQHDLEFVDLSHIK-MNGEFPTWLLENNAKLETLFLINDS-IGGPFRL-PIHPHRRLRFLDVSNNN-FQGHMPVEIGDI  361 (682)
Q Consensus       286 ~~~~~L~~L~ls~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~  361 (682)
                      ..+++++.|.+.++. +++..-..+...+++++++++..|. +++.... .-.++++|++|+++.+. +.+.--..+..+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            466777777777775 3333334445567777777776632 2221111 11245666666666653 222222233344


Q ss_pred             CCCceEEEecCCcCCcC--CCcccCCCCCCCEEEccCC-cCCCcCchhhhhCCCCCCEEEccCCcC-CCcccccC-CCCC
Q 045291          362 LPSLFSFNISTNALHGS--IPSSFGNMKFLQILDLSNN-HLTGEIPEYLAVGCVNLNSLALSNNNL-QGHMFSRN-FNLT  436 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~-~~l~  436 (682)
                      +..++.+.+.+|.-.+.  +...-..+..+.++++..| .+++.-...+..++.+|+.|+.+++.- +......+ .+.+
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~  320 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH  320 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence            44555554444321110  0001122333444444443 222221122233455556665555432 22111111 2345


Q ss_pred             CccEEECCCCcCccc--CCccccCCCCCCEEeccCCcCCC--CchhhhcCCCCCCeecCCCCc
Q 045291          437 NLKWLLLEGNRFVGE--IPQSLSKCSSLEGLYLNNNSLSG--KIPRWLGNLTRLQYIIMPNNH  495 (682)
Q Consensus       437 ~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~  495 (682)
                      +|+.|.+.+|+..+.  ....-.+++.|+.+++.++....  .+...-.+++.|+.+.+++|.
T Consensus       321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce  383 (483)
T KOG4341|consen  321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE  383 (483)
T ss_pred             ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence            556665555542111  00111234555555555554321  111112334555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.94  E-value=4e-06  Score=77.14  Aligned_cols=240  Identities=21%  Similarity=0.134  Sum_probs=124.8

Q ss_pred             ccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCC---CCCCh------
Q 045291          286 YHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ---GHMPV------  356 (682)
Q Consensus       286 ~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~------  356 (682)
                      ..+..++.+++|+|.|......|+.....+.+.                     |+..+++.-...   +.++.      
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~---------------------L~vvnfsd~ftgr~kde~~~~L~~Ll   85 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRN---------------------LRVVNFSDAFTGRDKDELYSNLVMLL   85 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcc---------------------eeEeehhhhhhcccHHHHHHHHHHHH
Confidence            346778899999999877666665433333222                     222222221100   01111      


Q ss_pred             -hhhhcCCCceEEEecCCcCCcCCCc----ccCCCCCCCEEEccCCcCCCcCch-----hhh--------hCCCCCCEEE
Q 045291          357 -EIGDILPSLFSFNISTNALHGSIPS----SFGNMKFLQILDLSNNHLTGEIPE-----YLA--------VGCVNLNSLA  418 (682)
Q Consensus       357 -~~~~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~-----~~~--------~~~~~L~~L~  418 (682)
                       .+. .||.|+..++++|.+....|.    .+++-+.|++|.+++|.+. .+..     .++        ..-|.|++.+
T Consensus        86 ~aLl-kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238          86 KALL-KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             HHHh-cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence             111 255666666666655433332    2344455666666666543 2111     110        1245566666


Q ss_pred             ccCCcCCCccc----ccCCCCCCccEEECCCCcCcccC-----CccccCCCCCCEEeccCCcCCCC----chhhhcCCCC
Q 045291          419 LSNNNLQGHMF----SRNFNLTNLKWLLLEGNRFVGEI-----PQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTR  485 (682)
Q Consensus       419 l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~  485 (682)
                      ...|++.....    ..+..-.+|+.+.+..|.+...-     -..+..+.+|+.||+.+|-++-.    ....+...+.
T Consensus       164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            66666553221    12222346666777666654221     11223356777777777766522    2233344566


Q ss_pred             CCeecCCCCcCcCCcchh----c--cCCCCCCEEEccCCcCCCCcchh------hccCCCCCcEEECCCCcCCCC
Q 045291          486 LQYIIMPNNHLEGPIPVE----F--CQLDLLQILDISDNNISGRLIPS------TFSNLKQIESLDLSYNKLNGK  548 (682)
Q Consensus       486 L~~L~L~~n~l~~~~~~~----~--~~l~~L~~L~Ls~n~~~~~~~~~------~~~~l~~L~~L~l~~n~l~~~  548 (682)
                      |+.|.+.+|-++..-...    |  ...++|..|...+|.+.+..+..      .-.+++-|..|.+.+|.+...
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            777777777666433322    2  23477778888887665422221      124678888899999998843

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=1.2e-05  Score=53.44  Aligned_cols=39  Identities=36%  Similarity=0.592  Sum_probs=23.5

Q ss_pred             CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCc
Q 045291            5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDI   46 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~   46 (682)
                      ++|++|++++|++   .++|..++++++|++|++++|+|+.+
T Consensus         1 ~~L~~L~l~~N~i---~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQI---TDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS----SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCC---cccCchHhCCCCCCEEEecCCCCCCC
Confidence            4566667776666   34555566666666666666666643

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=3e-06  Score=92.73  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=24.4

Q ss_pred             cCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEc
Q 045291          287 HQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFL  321 (682)
Q Consensus       287 ~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l  321 (682)
                      .+|+|+.||.|+..+...+-+.+...-++|+.+..
T Consensus       248 ~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  248 VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             cCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence            36688999999888877666665555566665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.88  E-value=2.5e-05  Score=69.00  Aligned_cols=126  Identities=25%  Similarity=0.272  Sum_probs=81.2

Q ss_pred             cEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEcc
Q 045291          341 RFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS  420 (682)
Q Consensus       341 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  420 (682)
                      +++++++.++.  ..........+...+|+++|.+...  ..|..++.|.+|.+.+|+|+ .+...+..-+++|+.|.+.
T Consensus        22 ~e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccc--chhhccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            45566665543  1112333355777888888887633  35667788888888888887 6666666667788888888


Q ss_pred             CCcCCCcc-cccCCCCCCccEEECCCCcCcccC---CccccCCCCCCEEeccCCc
Q 045291          421 NNNLQGHM-FSRNFNLTNLKWLLLEGNRFVGEI---PQSLSKCSSLEGLYLNNNS  471 (682)
Q Consensus       421 ~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~l~~n~  471 (682)
                      +|++.... ...+..+|+|++|.+-+|++...-   -..+..+++|+.||+.+=.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            88776321 234456778888888777765321   1345667777777776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1.7e-05  Score=52.64  Aligned_cols=38  Identities=42%  Similarity=0.587  Sum_probs=32.6

Q ss_pred             CCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCc
Q 045291           31 PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHI   72 (682)
Q Consensus        31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~   72 (682)
                      ++|++|++++|+|+.+    ++.++++++|++|++++|.++.
T Consensus         1 ~~L~~L~l~~N~i~~l----~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDL----PPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSH----GGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCccc----CchHhCCCCCCEEEecCCCCCC
Confidence            5799999999999988    6679999999999999999873

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.83  E-value=3.9e-05  Score=67.81  Aligned_cols=110  Identities=18%  Similarity=0.179  Sum_probs=85.2

Q ss_pred             CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291          134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS  213 (682)
Q Consensus       134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~  213 (682)
                      ..+...+||++|.+..    ++  .|..+++|..|.+.+|+|+.+.|.--.-+++|+.|.+.+|+|..--.-..+..+++
T Consensus        41 ~d~~d~iDLtdNdl~~----l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK----LD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccccceecccccchhh----cc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            6678899999999854    33  57889999999999999998777766667899999999998873222345778899


Q ss_pred             CcEEecCCCcCccccC--ccccccCCCCcEEEccCCcc
Q 045291          214 IEMLILSDNHFQIPIS--LEPLFNHSRLKIFYADNNEL  249 (682)
Q Consensus       214 L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~~~~~  249 (682)
                      |+.|.+-+|+.+....  .-.+..+++|+.|++.+-..
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            9999999998863221  12367889999999877543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=9.3e-05  Score=74.57  Aligned_cols=55  Identities=15%  Similarity=0.105  Sum_probs=29.9

Q ss_pred             cCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCC
Q 045291          312 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN  373 (682)
Q Consensus       312 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  373 (682)
                      .+.+++.|++++|.+....    .-..+|++|.+++|.-...+|..+   .++|+.|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence            3466677777766655542    123356666666643323444433   235666666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.75  E-value=7.7e-05  Score=64.15  Aligned_cols=37  Identities=30%  Similarity=0.521  Sum_probs=12.9

Q ss_pred             cccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEc
Q 045291          381 SSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL  419 (682)
Q Consensus       381 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  419 (682)
                      ..|.++++|+.+.+..+ +. .++..++.++++++.+.+
T Consensus        29 ~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred             hhccccccccccccccc-cc-ccceeeeecccccccccc
Confidence            34444444444444332 22 333334433434444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.74  E-value=6.6e-05  Score=64.56  Aligned_cols=83  Identities=20%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             ccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCC
Q 045291          382 SFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSS  461 (682)
Q Consensus       382 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  461 (682)
                      .|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            445555555555543 233 444444444545555555442 3333334444444444444433 222222333444444


Q ss_pred             CCEEecc
Q 045291          462 LEGLYLN  468 (682)
Q Consensus       462 L~~L~l~  468 (682)
                      |+.+++.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            4444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00013  Score=73.45  Aligned_cols=134  Identities=13%  Similarity=0.134  Sum_probs=79.0

Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCC-cCCCcccccCCCCCCccE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN-NLQGHMFSRNFNLTNLKW  440 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  440 (682)
                      +++++.|++++|.++.. |.   -.++|++|.+++|.-...+|..+   .++|+.|++++| .+. ..      .+.|+.
T Consensus        51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sL------P~sLe~  116 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GL------PESVRS  116 (426)
T ss_pred             hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cc------ccccce
Confidence            67889999999877743 41   23468999998754333666543   357888888887 443 22      235777


Q ss_pred             EECCCCcCcccCCccccC-CCCCCEEeccCCcCC--CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccC
Q 045291          441 LLLEGNRFVGEIPQSLSK-CSSLEGLYLNNNSLS--GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD  517 (682)
Q Consensus       441 L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  517 (682)
                      |+++.+....     +.. .++|+.|.+.+++..  ...|.  .-.++|++|++++|... ..|..+.  .+|+.|+++.
T Consensus       117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             EEeCCCCCcc-----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence            7776654431     111 235667777543211  01111  11257888888877765 3343333  5788888877


Q ss_pred             Cc
Q 045291          518 NN  519 (682)
Q Consensus       518 n~  519 (682)
                      +.
T Consensus       187 n~  188 (426)
T PRK15386        187 EQ  188 (426)
T ss_pred             cc
Confidence            63

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.62  E-value=5.8e-05  Score=82.84  Aligned_cols=136  Identities=21%  Similarity=0.248  Sum_probs=91.5

Q ss_pred             CCCcEEeCCCCCcCCCCccccccCC-CCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccC
Q 045291            5 RKLKSFGLSGVGIRDGSKLLQSMGS-FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP   83 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~   83 (682)
                      .+|++|++++.... ...+|..++. +|+|+.|.+++-.+....  -.....++++|+.||+++++++..  ..+.++.+
T Consensus       122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence            47888888887654 4566666544 889999988887665432  022455788899999988888643  66777777


Q ss_pred             cceeeccCccccCc-ccCCCCCCCCCCCceeecCCCccccccchhH---HHhhcCCCCcEEEccCCCC
Q 045291           84 SLKNLSISYCEVNG-VLRGQGFPSFKSLEHLHMSFAPIALNTSFLQ---IIGESMPSLKYLSLSGSIL  147 (682)
Q Consensus        84 L~~l~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~l~~~l~~L~~L~L~~~~l  147 (682)
                      |+.|-+.+-.+... ...+  +-++++|++||+|..+......+..   ..+..+|+||.||.+++.+
T Consensus       197 Lq~L~mrnLe~e~~~~l~~--LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLID--LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHHHhccCCCCCchhhHHH--HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            87777665554331 1112  6678999999999854332222222   2234589999999999887

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=0.00033  Score=64.92  Aligned_cols=64  Identities=23%  Similarity=0.350  Sum_probs=26.0

Q ss_pred             CCCCCeecCCCC--cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291          483 LTRLQYIIMPNN--HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       483 l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      +++|+.|.++.|  .+.+..+.....+++|++|++++|+|.-...-.-+..+.+|..|++.+|..+
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            344444444444  2322222222333555555555555431001112233444555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=3.5e-05  Score=71.37  Aligned_cols=101  Identities=27%  Similarity=0.235  Sum_probs=55.8

Q ss_pred             CCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcc-hhccCCCCCCEE
Q 045291          435 LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDLLQIL  513 (682)
Q Consensus       435 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L  513 (682)
                      +.+.+.|+..+|.+.++  .....++.|+.|.|+-|.|+..-|  +..|++|++|+|..|.|.+... .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34556666666666543  334456666666666666654433  5566666666666666654322 224566666666


Q ss_pred             EccCCcCCCCcch----hhccCCCCCcEEE
Q 045291          514 DISDNNISGRLIP----STFSNLKQIESLD  539 (682)
Q Consensus       514 ~Ls~n~~~~~~~~----~~~~~l~~L~~L~  539 (682)
                      .|..|+-.+...+    ..+.-+++|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666654431111    2345555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.04  E-value=0.00014  Score=78.77  Aligned_cols=63  Identities=29%  Similarity=0.223  Sum_probs=30.4

Q ss_pred             CCCceEEEecCCc-CCcCCCcccC-CCCCCCEEEccCCc-CCCcCchhhhhCCCCCCEEEccCCcC
Q 045291          362 LPSLFSFNISTNA-LHGSIPSSFG-NMKFLQILDLSNNH-LTGEIPEYLAVGCVNLNSLALSNNNL  424 (682)
Q Consensus       362 l~~L~~L~l~~n~-i~~~~~~~~~-~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~l  424 (682)
                      +++|+.++++.+. ++...-..+. .+++|++|.+.++. +++..-..+...++.|++|+++.|..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4555566665555 3322211221 25556666655554 34333344444555666666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=5.4e-05  Score=70.18  Aligned_cols=100  Identities=24%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCc-hhhhcCCCCCCee
Q 045291          411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI-PRWLGNLTRLQYI  489 (682)
Q Consensus       411 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L  489 (682)
                      +.+.++|+..+|.+.++.  ....++.|+.|.|+-|.++..  ..+..|+.|++|+|..|.|.+.- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            445566666666666432  223566677777777776543  34566677777777777665321 1234566777777


Q ss_pred             cCCCCcCcCCcc-----hhccCCCCCCEEE
Q 045291          490 IMPNNHLEGPIP-----VEFCQLDLLQILD  514 (682)
Q Consensus       490 ~L~~n~l~~~~~-----~~~~~l~~L~~L~  514 (682)
                      +|..|.=.+.-+     ..+.-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            776665443322     2245566666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.63  E-value=0.0014  Score=60.85  Aligned_cols=83  Identities=19%  Similarity=0.201  Sum_probs=39.6

Q ss_pred             CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCC--CCCCccccCccccCCCCCCCEEeCCCCCCCc-chhHHHhh
Q 045291            4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYN--NFTDIAITTTQELHNFTNLEYLTLDESSLHI-SLLQSIAS   80 (682)
Q Consensus         4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~   80 (682)
                      +..|..|++.+..+....    .+-.+|+|++|.+|.|  .++.-.   .....++++|++|+++.|++.. .-......
T Consensus        42 ~~~le~ls~~n~gltt~~----~~P~Lp~LkkL~lsdn~~~~~~~l---~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT----NFPKLPKLKKLELSDNYRRVSGGL---EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccchhhhhhhccceeecc----cCCCcchhhhhcccCCcccccccc---eehhhhCCceeEEeecCCccccccccchhhh
Confidence            344455555544442212    2334666677777766  333221   2233445677777777776652 11222334


Q ss_pred             ccCcceeeccCcc
Q 045291           81 LFPSLKNLSISYC   93 (682)
Q Consensus        81 l~~L~~l~~~~~~   93 (682)
                      +.+|..+++..|.
T Consensus       115 l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  115 LENLKSLDLFNCS  127 (260)
T ss_pred             hcchhhhhcccCC
Confidence            4445555544444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.39  E-value=0.00073  Score=73.07  Aligned_cols=114  Identities=21%  Similarity=0.032  Sum_probs=50.4

Q ss_pred             CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCC-CC-CCccccCccccCCCCCCCEEeCCCCC-CCcchhHHHhh
Q 045291            4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYN-NF-TDIAITTTQELHNFTNLEYLTLDESS-LHISLLQSIAS   80 (682)
Q Consensus         4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~i-~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~   80 (682)
                      +++|+.|.+..+.-.....+-.....+++|+.|+++++ .. .............+.+|+.|+++++. ++......+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566666666532101113345556666666666652 11 11100001123345666666666655 44444444432


Q ss_pred             -ccCcceeeccCccccCcccCCCCCCCCCCCceeecCC
Q 045291           81 -LFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSF  117 (682)
Q Consensus        81 -l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  117 (682)
                       ++.|+++.+..+..++...-......++.|++|++++
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~  304 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG  304 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence             4455555533333221111111133455566666655

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.84  E-value=0.0001  Score=77.27  Aligned_cols=191  Identities=26%  Similarity=0.253  Sum_probs=87.9

Q ss_pred             CCEEecCCCCCCCccccCc-cccCCCCCCCEEeCCCCCCCcchhHHHhh----c-cCcceeeccCccccCc----ccCCC
Q 045291           33 LNTLDLSYNNFTDIAITTT-QELHNFTNLEYLTLDESSLHISLLQSIAS----L-FPSLKNLSISYCEVNG----VLRGQ  102 (682)
Q Consensus        33 L~~L~Ls~n~i~~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~----l-~~L~~l~~~~~~~~~~----~~~~~  102 (682)
                      +.+|.|.+|.+..-..... ..+.....|..|++++|.+.+.....+..    . ..++++.+..|.....    +.+  
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~--  166 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA--  166 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH--
Confidence            5555566665554321111 13445556666666666554322222211    1 1222233333332211    111  


Q ss_pred             CCCCCCCCceeecCCCcccccc--chhHHHhh---cCCCCcEEEccCCCCCCCCCCcccccccCCCC-CCEEEccCCCCc
Q 045291          103 GFPSFKSLEHLHMSFAPIALNT--SFLQIIGE---SMPSLKYLSLSGSILGTNSSRILDQGLCSLVH-LQELRMADNDLR  176 (682)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~---~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~-L~~L~L~~n~l~  176 (682)
                      .+.....++.++++.|...-.+  ..+..+.+   ...++++|++.+|.++.......+..+...+. +++|++..|.+.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            1444556666666663322111  11122221   25566777777776643222333334555555 566777766665


Q ss_pred             cc----CchhhcCC-CCCCEEeccCCccccccC---CchhcccCCCcEEecCCCcCc
Q 045291          177 GS----LPWCLANM-TSLRILDVSFNQLTGSIS---SSPLVHLTSIEMLILSDNHFQ  225 (682)
Q Consensus       177 ~~----~~~~~~~l-~~L~~L~L~~n~l~~~i~---~~~~~~l~~L~~L~L~~n~l~  225 (682)
                      +.    ....+..+ ..+++++++.|.+++.-.   ...+..++.++.+.+++|++.
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            32    22334444 566677777776653210   122334556666666666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.28  E-value=0.013  Score=32.05  Aligned_cols=11  Identities=36%  Similarity=0.582  Sum_probs=4.8

Q ss_pred             CcEEeCCCCCc
Q 045291            7 LKSFGLSGVGI   17 (682)
Q Consensus         7 L~~L~L~~~~~   17 (682)
                      |++|+|++|++
T Consensus         2 L~~Ldls~n~l   12 (22)
T PF00560_consen    2 LEYLDLSGNNL   12 (22)
T ss_dssp             ESEEEETSSEE
T ss_pred             ccEEECCCCcC
Confidence            34444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.99  E-value=0.0011  Score=69.85  Aligned_cols=182  Identities=26%  Similarity=0.293  Sum_probs=81.8

Q ss_pred             ceEEEecCCcCCcC----CCcccCCCCCCCEEEccCCcCCCcCchhhhhCC----CCCCEEEccCCcCCCcc----cccC
Q 045291          365 LFSFNISTNALHGS----IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGC----VNLNSLALSNNNLQGHM----FSRN  432 (682)
Q Consensus       365 L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~----~~~~  432 (682)
                      +..+.+.+|.+...    +...+...+.|+.|++++|.+.+.....+..++    ..++.|++..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            56667777776533    223445566777777777776533222222222    23444555555554321    2223


Q ss_pred             CCCCCccEEECCCCcCccc----CCcccc----CCCCCCEEeccCCcCCCC----chhhhcCCCC-CCeecCCCCcCcCC
Q 045291          433 FNLTNLKWLLLEGNRFVGE----IPQSLS----KCSSLEGLYLNNNSLSGK----IPRWLGNLTR-LQYIIMPNNHLEGP  499 (682)
Q Consensus       433 ~~l~~L~~L~l~~n~~~~~----~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~L~~n~l~~~  499 (682)
                      .....++.++++.|.+...    ++..+.    ...++++|.+.+|.++..    ....+...++ +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            3345555566655554210    112222    244555555555554421    1112223333 44455555555432


Q ss_pred             c----chhccCC-CCCCEEEccCCcCCCCc---chhhccCCCCCcEEECCCCcCC
Q 045291          500 I----PVEFCQL-DLLQILDISDNNISGRL---IPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       500 ~----~~~~~~l-~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      .    ...+..+ ..++.++++.|.|+...   ....+..++.++.+.++.|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            1    1122223 34455555555554311   1223344445555555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.59  E-value=0.033  Score=30.48  Aligned_cols=21  Identities=48%  Similarity=0.596  Sum_probs=17.0

Q ss_pred             CCCEEecCCCCCCCccccCccccCC
Q 045291           32 SLNTLDLSYNNFTDIAITTTQELHN   56 (682)
Q Consensus        32 ~L~~L~Ls~n~i~~~~~~~~~~l~~   56 (682)
                      +|++|||++|+++.+    |++|++
T Consensus         1 ~L~~Ldls~n~l~~i----p~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSI----PSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEE----GTTTTT
T ss_pred             CccEEECCCCcCEeC----ChhhcC
Confidence            589999999999976    556654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.85  E-value=0.11  Score=26.24  Aligned_cols=14  Identities=57%  Similarity=0.721  Sum_probs=5.8

Q ss_pred             CCCEEecCCCCCCC
Q 045291           32 SLNTLDLSYNNFTD   45 (682)
Q Consensus        32 ~L~~L~Ls~n~i~~   45 (682)
                      +|++|+|++|+++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            45555555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.32  E-value=0.38  Score=27.48  Aligned_cols=16  Identities=38%  Similarity=0.532  Sum_probs=7.9

Q ss_pred             CCCcEEECCCCcCCCC
Q 045291          533 KQIESLDLSYNKLNGK  548 (682)
Q Consensus       533 ~~L~~L~l~~n~l~~~  548 (682)
                      ++|+.|+|++|+|...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3455555555555533

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.32  E-value=0.38  Score=27.48  Aligned_cols=16  Identities=38%  Similarity=0.532  Sum_probs=7.9

Q ss_pred             CCCcEEECCCCcCCCC
Q 045291          533 KQIESLDLSYNKLNGK  548 (682)
Q Consensus       533 ~~L~~L~l~~n~l~~~  548 (682)
                      ++|+.|+|++|+|...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3455555555555533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.98  E-value=0.4  Score=27.35  Aligned_cols=21  Identities=43%  Similarity=0.491  Sum_probs=13.5

Q ss_pred             CCCCEEEccCCcCCCcCchhhh
Q 045291          387 KFLQILDLSNNHLTGEIPEYLA  408 (682)
Q Consensus       387 ~~L~~L~l~~n~~~~~~~~~~~  408 (682)
                      ++|++|++++|++. .+|..+|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45667777777666 6666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.98  E-value=0.4  Score=27.35  Aligned_cols=21  Identities=43%  Similarity=0.491  Sum_probs=13.5

Q ss_pred             CCCCEEEccCCcCCCcCchhhh
Q 045291          387 KFLQILDLSNNHLTGEIPEYLA  408 (682)
Q Consensus       387 ~~L~~L~l~~n~~~~~~~~~~~  408 (682)
                      ++|++|++++|++. .+|..+|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45667777777666 6666554

>TIGR00864 PCC polycystin cation channel protein

Probab=87.53  E-value=0.34  Score=60.22  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=31.5

Q ss_pred             ECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          539 DLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       539 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      ||++|+|+.+.+..|..+++|+.|+|++|||.|.|.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~   36 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG   36 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence            578899997777888889999999999999998777

Note: this model has been restricted to the amino half because for technical reasons.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.47  E-value=0.13  Score=46.24  Aligned_cols=81  Identities=19%  Similarity=0.121  Sum_probs=39.4

Q ss_pred             CCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCc-chhc-cCCCCCCEEEccCCc-CCCCcchhhccCCCCCcE
Q 045291          461 SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI-PVEF-CQLDLLQILDISDNN-ISGRLIPSTFSNLKQIES  537 (682)
Q Consensus       461 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~-~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~  537 (682)
                      .++.++-+++.|..+--+.+.+++.++.|.+.+|.--+.. -+-+ ...++|+.|+|++|. ||+ .--..+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHHHHHHhhhhHH
Confidence            3456666666665444445555666666666555322110 0001 123556666666553 443 22334445555555


Q ss_pred             EECCC
Q 045291          538 LDLSY  542 (682)
Q Consensus       538 L~l~~  542 (682)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            55543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.72  E-value=0.28  Score=44.14  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=19.2

Q ss_pred             CCCCceeecCCCccccccchhHHHhhcCCCCcEEEccC
Q 045291          107 FKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG  144 (682)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~  144 (682)
                      .++|+.|++++|+ .++..-...+.. +++|+.|.+.+
T Consensus       150 ~~~L~~L~lsgC~-rIT~~GL~~L~~-lknLr~L~l~~  185 (221)
T KOG3864|consen  150 APSLQDLDLSGCP-RITDGGLACLLK-LKNLRRLHLYD  185 (221)
T ss_pred             ccchheeeccCCC-eechhHHHHHHH-hhhhHHHHhcC
Confidence            3566666666653 233333444444 66666666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.17  E-value=0.031  Score=51.06  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=58.7

Q ss_pred             CCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCC
Q 045291          432 NFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ  511 (682)
Q Consensus       432 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  511 (682)
                      +......+.||++.|++. .+...|+.++.|..|+++.|.+. ..|..+.....+..+++..|..+ ..|..+...+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            334556677777777654 33445666667777777777776 66667777777777777777666 5666677777777


Q ss_pred             EEEccCCcCC
Q 045291          512 ILDISDNNIS  521 (682)
Q Consensus       512 ~L~Ls~n~~~  521 (682)
                      .+++.+|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            7777777654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.46  E-value=0.028  Score=51.35  Aligned_cols=82  Identities=17%  Similarity=0.198  Sum_probs=38.3

Q ss_pred             CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEc
Q 045291          485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV  564 (682)
Q Consensus       485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  564 (682)
                      ..+.||++.|++- .....|+-++.|..|+++.|++.  ..|..+.....+..+++..|..+ ..|..+...+.++++++
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            3344444444433 22223444444555555555543  24444554555555555555444 33444445555555555


Q ss_pred             cCccCc
Q 045291          565 AYNNLS  570 (682)
Q Consensus       565 ~~n~l~  570 (682)
                      -+|++.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.13  E-value=0.56  Score=26.13  Aligned_cols=14  Identities=64%  Similarity=0.890  Sum_probs=5.6

Q ss_pred             CCCCEEecCCCCCC
Q 045291           31 PSLNTLDLSYNNFT   44 (682)
Q Consensus        31 ~~L~~L~Ls~n~i~   44 (682)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34445555554443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.70  E-value=1.3  Score=25.37  Aligned_cols=16  Identities=44%  Similarity=0.609  Sum_probs=10.7

Q ss_pred             CCCCEEecCCCCCCCc
Q 045291           31 PSLNTLDLSYNNFTDI   46 (682)
Q Consensus        31 ~~L~~L~Ls~n~i~~~   46 (682)
                      .+|++|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            5677777777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	682
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-31
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-28
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-31
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-28
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-21

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 230/499 (46%), Gaps = 91/499 (18%)
Query: 32  SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
           SL +LDLS N+ +   +TT   L + + L++L +  ++L           FP        
Sbjct: 101 SLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLD----------FPG------- 142
Query: 92  YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNS 151
             +V+G L+        SLE L +S   I+       ++ +    LK+L++SG+ +    
Sbjct: 143 --KVSGGLK------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI---- 190
Query: 152 SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHL 211
           S  +D   C  V+L+ L ++ N+    +P+ L + ++L+ LD+S N+L+G  S + +   
Sbjct: 191 SGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 246
Query: 212 TSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLL 271
           T +++L +S N F  PI   PL     L+      N+   EI     L+     L  L L
Sbjct: 247 TELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDL 301
Query: 272 SSSYGDGFIFPKF------------------------LYHQHDLEFVDLSHIKMNGEFPT 307
           S ++  G + P F                        L     L+ +DLS  + +GE P 
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 308 WLLENNAKLETLFLINDSIGGPF--RLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365
            L   +A L TL L +++  GP    L  +P   L+ L + NN F G +P  + +    L
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SEL 420
Query: 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQ 425
            S ++S N L G+IPSS G++  L+ L L  N L GEIP+ L                  
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL------------------ 462
Query: 426 GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR 485
             M+ +      L+ L+L+ N   GEIP  LS C++L  + L+NN L+G+IP+W+G L  
Sbjct: 463 --MYVKT-----LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 486 LQYIIMPNNHLEGPIPVEF 504
           L  + + NN   G IP E 
Sbjct: 516 LAILKLSNNSFSGNIPAEL 534

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 202/512 (39%), Gaps = 140/512 (27%)
Query: 121 ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH-----LQELRMADNDL 175
            L+ SF +  GE   SL  LS S   L  +S+      L +L       LQEL + +N  
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 176 RGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFN 235
            G +P  L+N + L  L +SFN L+G+I SS L  L+ +  L L  N  +  I  E ++ 
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 236 HSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVD 295
            + L+    D N+L  EI                            P  L +  +L ++ 
Sbjct: 466 KT-LETLILDFNDLTGEI----------------------------PSGLSNCTNLNWIS 496
Query: 296 LSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMP 355
           LS+ ++ GE P W+     +LE L +                     L +SNN+F G++P
Sbjct: 497 LSNNRLTGEIPKWI----GRLENLAI---------------------LKLSNNSFSGNIP 531
Query: 356 VEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA-VGCVXX 414
            E+GD   SL   +++TN  +G+IP++     F Q   ++ N + G+   Y+   G    
Sbjct: 532 AELGDCR-SLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 415 XXXXXXXXXXQG-------HMFSRN-FNLTN----------------LKWLLLEGNRFVG 450
                     QG        + +RN  N+T+                + +L +  N   G
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXX 510
            IP+ +     L  L L +N +SG IP  +G+L  L  + + +N L+G            
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG------------ 694
Query: 511 XXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
                         IP   S L  +  +DLS N                        NLS
Sbjct: 695 -------------RIPQAMSALTMLTEIDLSNN------------------------NLS 717
Query: 571 GEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
           G IPE   QF TF  + +  N  LCG PLP C
Sbjct: 718 GPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 230/499 (46%), Gaps = 91/499 (18%)
Query: 32  SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
           SL +LDLS N+ +   +TT   L + + L++L +  ++L           FP        
Sbjct: 98  SLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLD----------FPG------- 139
Query: 92  YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNS 151
             +V+G L+        SLE L +S   I+       ++ +    LK+L++SG+ +    
Sbjct: 140 --KVSGGLK------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI---- 187
Query: 152 SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHL 211
           S  +D   C  V+L+ L ++ N+    +P+ L + ++L+ LD+S N+L+G  S + +   
Sbjct: 188 SGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 243
Query: 212 TSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLL 271
           T +++L +S N F  PI   PL     L+      N+   EI     L+     L  L L
Sbjct: 244 TELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDL 298
Query: 272 SSSYGDGFIFPKF------------------------LYHQHDLEFVDLSHIKMNGEFPT 307
           S ++  G + P F                        L     L+ +DLS  + +GE P 
Sbjct: 299 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 308 WLLENNAKLETLFLINDSIGGPF--RLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365
            L   +A L TL L +++  GP    L  +P   L+ L + NN F G +P  + +    L
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SEL 417
Query: 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQ 425
            S ++S N L G+IPSS G++  L+ L L  N L GEIP+ L                  
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL------------------ 459
Query: 426 GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR 485
             M+ +      L+ L+L+ N   GEIP  LS C++L  + L+NN L+G+IP+W+G L  
Sbjct: 460 --MYVKT-----LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 486 LQYIIMPNNHLEGPIPVEF 504
           L  + + NN   G IP E 
Sbjct: 513 LAILKLSNNSFSGNIPAEL 531

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 202/512 (39%), Gaps = 140/512 (27%)
Query: 121 ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH-----LQELRMADNDL 175
            L+ SF +  GE   SL  LS S   L  +S+      L +L       LQEL + +N  
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 176 RGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFN 235
            G +P  L+N + L  L +SFN L+G+I SS L  L+ +  L L  N  +  I  E ++ 
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 236 HSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVD 295
            + L+    D N+L  EI                            P  L +  +L ++ 
Sbjct: 463 KT-LETLILDFNDLTGEI----------------------------PSGLSNCTNLNWIS 493
Query: 296 LSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMP 355
           LS+ ++ GE P W+     +LE L +                     L +SNN+F G++P
Sbjct: 494 LSNNRLTGEIPKWI----GRLENLAI---------------------LKLSNNSFSGNIP 528
Query: 356 VEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA-VGCVXX 414
            E+GD   SL   +++TN  +G+IP++     F Q   ++ N + G+   Y+   G    
Sbjct: 529 AELGDCR-SLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 415 XXXXXXXXXXQG-------HMFSRN-FNLTN----------------LKWLLLEGNRFVG 450
                     QG        + +RN  N+T+                + +L +  N   G
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXX 510
            IP+ +     L  L L +N +SG IP  +G+L  L  + + +N L+G            
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG------------ 691
Query: 511 XXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
                         IP   S L  +  +DLS N                        NLS
Sbjct: 692 -------------RIPQAMSALTMLTEIDLSNN------------------------NLS 714
Query: 571 GEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
           G IPE   QF TF  + +  N  LCG PLP C
Sbjct: 715 GPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 114/256 (44%), Gaps = 31/256 (12%)
Query: 348 NNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYL 407
           NN  G +P  I   L  L    I+   + G+IP     +K L  LD S N L+G +P  +
Sbjct: 87  NNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 408 AVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSL-EGLY 466
           +                         +L NL  +  +GNR  G IP S    S L   + 
Sbjct: 146 S-------------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 467 LNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIP 526
           ++ N L+GKIP    NL  L ++ +  N LEG   V F           + N+++  L  
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 527 STFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 586
              S  K +  LDL  N++ G +P  L +LK L   +V++NNL GEIP+       F+ S
Sbjct: 240 VGLS--KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296
Query: 587 SYEGNIFLCGLPLPIC 602
           +Y  N  LCG PLP C
Sbjct: 297 AYANNKCLCGSPLPAC 312

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	682
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-109
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-77
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  345 bits (888), Expect = e-109
 Identities = 157/598 (26%), Positives = 256/598 (42%), Gaps = 35/598 (5%)

Query: 7   LKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLD 66
           L S  L+       S +  S+ S   L +L LS ++       +        +L  L L 
Sbjct: 57  LSSKPLNV----GFSAVSSSLLSLTGLESLFLSNSHING----SVSGFKCSASLTSLDLS 108

Query: 67  ESSLH--ISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT 124
            +SL   ++ L S+ S    LK L++S   ++   +  G     SLE L +S   I+   
Sbjct: 109 RNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 125 SFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLA 184
               ++ +    LK+L++SG+ +   S  +    +   V+L+ L ++ N+    +P+ L 
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKI---SGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LG 220

Query: 185 NMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYA 244
           + ++L+ LD+S N+L+G  S + +   T +++L +S N F  PI   P      L+    
Sbjct: 221 DCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSL 276

Query: 245 DNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGE 304
             N+   EI    S       L  L LS ++  G + P F      LE + LS    +GE
Sbjct: 277 AENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGE 333

Query: 305 FPTWLLENNAKLETLFLINDSIGGPFRLPI-HPHRRLRFLDVSNNNFQGHMPVEIGDI-L 362
            P   L     L+ L L  +   G     + +    L  LD+S+NNF G +   +     
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN 422
            +L    +  N   G IP +  N   L  L LS N+L+G IP  L      L  L L  N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLN 452

Query: 423 NLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 482
            L+G +      +  L+ L+L+ N   GEIP  LS C++L  + L+NN L+G+IP+W+G 
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

Query: 483 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY 542
           L  L  + + NN   G IP E      L  LD++ N  +G  IP+         S  ++ 
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT-IPAAMFKQ----SGKIAA 567

Query: 543 NKLNGKMPHQLVELKTLEVFSVAYN--NLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598
           N + GK    +      +    A N     G   E   + +T N  +    ++     
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  293 bits (753), Expect = 4e-89
 Identities = 146/579 (25%), Positives = 229/579 (39%), Gaps = 102/579 (17%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNL 88
              SL  L L+ N FT   I           L  L L  +  + ++     S    L++L
Sbjct: 267 PLKSLQYLSLAENKFTG-EIPDFL-SGACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESL 323

Query: 89  SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG-SIL 147
           ++S    +G L        + L+ L +SF     +    + +     SL  L LS  +  
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFN--EFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 148 GTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSP 207
           G     +          LQEL + +N   G +P  L+N + L  L +SFN L+G+I SS 
Sbjct: 382 GPILPNL---CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS- 437

Query: 208 LVHLTSIEMLILSDNHFQ--IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 265
           L  L+ +  L L  N  +  IP  L        L+    D N+L  EI            
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQEL---MYVKTLETLILDFNDLTGEI------------ 482

Query: 266 LNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDS 325
                           P  L +  +L ++ LS+ ++ GE P W+                
Sbjct: 483 ----------------PSGLSNCTNLNWISLSNNRLTGEIPKWI---------------- 510

Query: 326 IGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGN 385
                RL       L  L +SNN+F G++P E+GD   SL   +++TN  +G+IP++   
Sbjct: 511 ----GRLE-----NLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFK 560

Query: 386 MKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN--NLQGHMFSRNFNLTNLKWLLL 443
                   ++ N + G+   Y+            + N    QG    +   L+      +
Sbjct: 561 QS----GKIAANFIAGKRYVYIK-NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

Query: 444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 503
               + G    +     S+  L ++ N LSG IP+ +G++  L                 
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI--------------- 660

Query: 504 FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFS 563
                    L++  N+ISG  IP    +L+ +  LDLS NKL+G++P  +  L  L    
Sbjct: 661 ---------LNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 564 VAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
           ++ NNLSG IPE   QF TF  + +  N  LCG PLP C
Sbjct: 711 LSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  262 bits (671), Expect = 2e-77
 Identities = 110/429 (25%), Positives = 174/429 (40%), Gaps = 50/429 (11%)

Query: 160 CSLVHLQELRMADNDLR---GSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEM 216
           C    +  + ++   L     ++   L ++T L  L +S + + GS+S        S+  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTS 104

Query: 217 LILSDNHF--QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSS 274
           L LS N     +      L + S LK     +N L+     S  L   +           
Sbjct: 105 LDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS----------- 152

Query: 275 YGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNA--KLETLFLINDSIGGPFRL 332
                           LE +DLS   ++G      + ++   +L+ L +  + I G   +
Sbjct: 153 ----------------LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V 194

Query: 333 PIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQIL 392
            +     L FLDVS+NNF   +P  +GD   +L   +IS N L G    +      L++L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 393 DLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHM-FSRNFNLTNLKWLLLEGNRFVGE 451
           ++S+N   G IP        +L  L+L+ N   G +    +     L  L L GN F G 
Sbjct: 253 NISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 452 IPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL- 509
           +P     CS LE L L++N+ SG++P   L  +  L+ + +  N   G +P     L   
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 510 LQILDISDNNISGRLIPSTFSN--LKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN 567
           L  LD+S NN SG  I           ++ L L  N   GK+P  L     L    +++N
Sbjct: 370 LLTLDLSSNNFSGP-ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 568 NLSGEIPEW 576
            LSG IP  
Sbjct: 429 YLSGTIPSS 437

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  232 bits (593), Expect = 7e-71
 Identities = 86/274 (31%), Positives = 132/274 (48%), Gaps = 10/274 (3%)

Query: 333 PIHPHRRLRFLDVSNNNFQG--HMPVEIGDILPSLFSFNIS-TNALHGSIPSSFGNMKFL 389
                 R+  LD+S  N      +P  + + LP L    I   N L G IP +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFV 449
             L +++ +++G IP++L+     L +L  S N L G +     +L NL  +  +GNR  
Sbjct: 104 HYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 450 GEIPQSLSKCSSL-EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 508
           G IP S    S L   + ++ N L+GKIP    NL  L ++ +  N LEG   V F    
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221

Query: 509 LLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN 568
             Q + ++ N+++   +       K +  LDL  N++ G +P  L +LK L   +V++NN
Sbjct: 222 NTQKIHLAKNSLAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 569 LSGEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
           L GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 280 LCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  162 bits (412), Expect = 5e-45
 Identities = 67/270 (24%), Positives = 111/270 (41%), Gaps = 14/270 (5%)

Query: 252 EITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKM-NGEFPTWLL 310
             TQ++ +   +     L          I P  L +   L F+ +  I    G  P  + 
Sbjct: 45  TDTQTYRVNNLDLSGLNL-----PKPYPI-PSSLANLPYLNFLYIGGINNLVGPIPPAI- 97

Query: 311 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI 370
               +L  L++ + ++ G     +   + L  LD S N   G +P  I   LP+L     
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITF 156

Query: 371 STNALHGSIPSSFGNMKFL-QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF 429
             N + G+IP S+G+   L   + +S N LTG+IP       +NL  + LS N L+G   
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP--TFANLNLAFVDLSRNMLEGDAS 214

Query: 430 SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489
               +  N + + L  N    ++   +    +L GL L NN + G +P+ L  L  L  +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 490 IMPNNHLEGPIPVEFCQLDLLQILDISDNN 519
            +  N+L G IP     L    +   ++N 
Sbjct: 274 NVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  152 bits (387), Expect = 1e-41
 Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 11/207 (5%)

Query: 378 SIPSSFGNMKFLQ----ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF 433
            I    GN   L       D  N    G + +        +N+L LS  NL       + 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 434 --NLTNLKWLLLEG-NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII 490
             NL  L +L + G N  VG IP +++K + L  LY+ + ++SG IP +L  +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 491 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQ-IESLDLSYNKLNGKM 549
              N L G +P     L  L  +    N ISG  IP ++ +  +   S+ +S N+L GK+
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 550 PHQLVELKTLEVFSVAYNNLSGEIPEW 576
           P     L  L    ++ N L G+    
Sbjct: 191 PPTFANLN-LAFVDLSRNMLEGDASVL 216

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (385), Expect = 3e-41
 Identities = 73/327 (22%), Positives = 112/327 (34%), Gaps = 64/327 (19%)

Query: 172 DNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLV-HLTSIEMLILSD-NHF--QIP 227
           +    G L         +  LD+S   L         + +L  +  L +   N+    IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 228 ISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYH 287
            +   +   ++L   Y  +  ++  I                            P FL  
Sbjct: 95  PA---IAKLTQLHYLYITHTNVSGAI----------------------------PDFLSQ 123

Query: 288 QHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSN 347
              L  +D S+  ++G  P  +                      LP      L  +    
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSI--------------------SSLP-----NLVGITFDG 158

Query: 348 NNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYL 407
           N   G +P   G       S  IS N L G IP +F N+  L  +DLS N L G+     
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF 217

Query: 408 AVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYL 467
                N   + L+ N+L   +  +     NL  L L  NR  G +PQ L++   L  L +
Sbjct: 218 G-SDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 468 NNNSLSGKIPRWLGNLTRLQYIIMPNN 494
           + N+L G+IP+  GNL R       NN
Sbjct: 276 SFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (324), Expect = 5e-33
 Identities = 61/298 (20%), Positives = 113/298 (37%), Gaps = 50/298 (16%)

Query: 133 SMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMAD-NDLRGSLPWCLANMTSLRI 191
               +  L LSG  L      I    L +L +L  L +   N+L G +P  +A +T L  
Sbjct: 48  QTYRVNNLDLSGLNL-PKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 192 LDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ--IPISLEPLFNHSRLKIFYADNNEL 249
           L ++   ++G+I    L  + ++  L  S N     +P S+    +   L     D N +
Sbjct: 106 LYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSI---SSLPNLVGITFDGNRI 161

Query: 250 N----AEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEF 305
           +            L         + +S +   G I P    +  +L FVDLS   + G+ 
Sbjct: 162 SGAIPDSYGSFSKL------FTSMTISRNRLTGKI-PPTFAN-LNLAFVDLSRNMLEGDA 213

Query: 306 PTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365
                 +                         +  + + ++ N+    +  ++G    +L
Sbjct: 214 SVLFGSD-------------------------KNTQKIHLAKNSLAFDLG-KVGL-SKNL 246

Query: 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN 423
              ++  N ++G++P     +KFL  L++S N+L GEIP+         +  A +NN 
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.9 bits (211), Expect = 3e-18
 Identities = 65/384 (16%), Positives = 113/384 (29%), Gaps = 125/384 (32%)

Query: 26  SMGSFPSLNTLDLSYNNFT-DIAITTTQELHNFTNLEYLTL-DESSLHISLLQSIASLFP 83
           +      +N LDLS  N      I +   L N   L +L +   ++L   +  +IA L  
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKL-T 101

Query: 84  SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLS 143
            L  L I++                                                ++S
Sbjct: 102 QLHYLYITHT-----------------------------------------------NVS 114

Query: 144 GSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSI 203
           G+I            L  +  L  L  + N L G+LP  ++++ +L  +    N+++G+I
Sbjct: 115 GAIPDF---------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 204 SSSPLVHLTS-IEMLILSDNHF--QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLT 260
             S     +     + +S N    +IP +   L     L       N L  +        
Sbjct: 166 PDS-YGSFSKLFTSMTISRNRLTGKIPPTFANL----NLAFVDLSRNMLEGDA------- 213

Query: 261 APNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLF 320
                                        + + + L+   +  +     +  +  L  L 
Sbjct: 214 ---------------------SVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLD 250

Query: 321 LINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIP 380
           L                         NN   G +P  +   L  L S N+S N L G IP
Sbjct: 251 L------------------------RNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP 285

Query: 381 SSFGNMKFLQILDLSNNHLTGEIP 404
              GN++   +   +NN      P
Sbjct: 286 QG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.8 bits (177), Expect = 1e-13
 Identities = 54/311 (17%), Positives = 110/311 (35%), Gaps = 76/311 (24%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLS-YNNFT-DIAITTTQELHNFTN 59
               ++ +  LSG+ +     +  S+ + P LN L +   NN    I       +   T 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI----PPAIAKLTQ 102

Query: 60  LEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAP 119
           L YL +  +++  ++   ++ +                          K+L  L  S+  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQI--------------------------KTLVTLDFSY-- 134

Query: 120 IALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSL 179
              N                 +LSG++  +         + SL +L  +    N + G++
Sbjct: 135 ---N-----------------ALSGTLPPS---------ISSLPNLVGITFDGNRISGAI 165

Query: 180 PWCLANMTSL-RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF--QIPISLEPLFNH 236
           P    + + L   + +S N+LTG I  +   +L ++  + LS N       +      + 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL-NLAFVDLSRNMLEGDASVL---FGSD 220

Query: 237 SRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDL 296
              +  +   N L  ++ +          LN L L ++   G + P+ L     L  +++
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSK----NLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNV 275

Query: 297 SHIKMNGEFPT 307
           S   + GE P 
Sbjct: 276 SFNNLCGEIPQ 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  225 bits (575), Expect = 1e-64
 Identities = 109/550 (19%), Positives = 199/550 (36%), Gaps = 48/550 (8%)

Query: 32  SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
           S    D S+   T +           TN+  L L  + L      +       L +L + 
Sbjct: 5   SHEVADCSHLKLTQV------PDDLPTNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVG 57

Query: 92  YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES---MPSLKYLSLSGSILG 148
           +  ++ +           L+ L++       +    Q+  ++     +L  L L  + + 
Sbjct: 58  FNTISKLEPEL-CQKLPMLKVLNLQ------HNELSQLSDKTFAFCTNLTELHLMSNSI- 109

Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSS-P 207
               +I +       +L  L ++ N L  +       + +L+ L +S N++    S    
Sbjct: 110 ---QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 208 LVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLN 267
           +   +S++ L LS N  +            RL   + +N +L   +T+   L   N  + 
Sbjct: 167 IFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

Query: 268 RLLLSSSYGDGFIFPKFL-YHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSI 326
            L LS+S         FL     +L  +DLS+  +N            +LE  FL  ++I
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNI 284

Query: 327 GGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 386
              F   +H    +R+L++  +                    +IS  +L      SF  +
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRS----------------FTKQSISLASLPKIDDFSFQWL 328

Query: 387 KFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFS----RNFNLTNLKWLL 442
           K L+ L++ +N + G        G +NL  L+LSN+       +     +   + L  L 
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 443 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQYIIMPNNHLEGPIP 501
           L  N+       + S    LE L L  N +  ++       L  +  I +  N       
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 502 VEFCQLDLLQILDISDNNISG-RLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLE 560
             F  +  LQ L +    +      PS F  L+ +  LDLS N +       L  L+ LE
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 561 VFSVAYNNLS 570
           +  + +NNL+
Sbjct: 508 ILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  216 bits (551), Expect = 4e-61
 Identities = 114/622 (18%), Positives = 201/622 (32%), Gaps = 86/622 (13%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
                L    L    I+             +L TLDLS+N  +   + T        NL+
Sbjct: 94  AFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGT---QVQLENLQ 148

Query: 62  YLTLDESSLHISLLQSIASLF-PSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPI 120
            L L  + +     + +      SLK L +S  ++     G  F +   L  L ++   +
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQL 207

Query: 121 ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLP 180
             + +    +  +  S++ LSLS S L T S+           +L  L ++ N+L     
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF--LGLKWTNLTMLDLSYNNLNVVGN 265

Query: 181 WCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISL--------EP 232
              A +  L    + +N +    S S L  L ++  L L  +  +  ISL          
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 233 LFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLE 292
                 L+    ++N++                              I         +L+
Sbjct: 325 FQWLKCLEHLNMEDNDIPG----------------------------IKSNMFTGLINLK 356

Query: 293 FVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG 352
           ++ LS+             +   L TL                 H  L  L+++ N    
Sbjct: 357 YLSLSN-------------SFTSLRTL--------TNETFVSLAHSPLHILNLTKNKISK 395

Query: 353 HMPVEIGDILPSLFSFNISTNALHGSIP-SSFGNMKFLQILDLSNNHLTGEIPEYLAVGC 411
                    L  L   ++  N +   +    +  ++ +  + LS N          A   
Sbjct: 396 IESDAFSW-LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LV 453

Query: 412 VNLNSLALSNNNLQGHMFSRNF--NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN 469
            +L  L L    L+    S +    L NL  L L  N         L     LE L L +
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 470 NSLS--------GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 521
           N+L+        G    +L  L+ L  + + +N  +      F  L  L+I+D+  NN++
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL-VELKTLEVFSVAYNNLSGEIP--EWTA 578
             L  S F+N   ++SL+L  N +            + L    + +N          W  
Sbjct: 574 T-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 632

Query: 579 QFA--TFNESSYEGNIFLCGLP 598
            +   T        + +LC  P
Sbjct: 633 NWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  210 bits (537), Expect = 3e-59
 Identities = 107/569 (18%), Positives = 194/569 (34%), Gaps = 77/569 (13%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
           +   +  L +LD+ +N  + +     +       L+ L L  + L     ++ A    +L
Sbjct: 44  NFTRYSQLTSLDVGFNTISKL---EPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNL 99

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGS 145
             L +    +  +     F   K+L  L +S   +   +S        + +L+ L LS +
Sbjct: 100 TELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGL---SSTKLGTQVQLENLQELLLSNN 155

Query: 146 ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
            +    S  L   + +   L++L ++ N ++   P C   +  L  L ++  QL  S++ 
Sbjct: 156 KIQALKSEEL--DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 206 SPLV--HLTSIEMLILSDNHFQ--IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA 261
              +    TSI  L LS++        +   L   + L +     N LN           
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-KWTNLTMLDLSYNNLN----------- 261

Query: 262 PNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFL 321
                             +          LE+  L +  +   F    L     +  L L
Sbjct: 262 -----------------VVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNL 303

Query: 322 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS 381
                           R      +S  +            L  L   N+  N + G   +
Sbjct: 304 ---------------KRSFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSN 347

Query: 382 SFGNMKFLQILDLSNNHLTGEIPEYLA---VGCVNLNSLALSNNNLQGHMFSRNF-NLTN 437
            F  +  L+ L LSN+  +           +    L+ L L+ N +   + S  F  L +
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGH 406

Query: 438 LKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
           L+ L L  N    E+  Q      ++  +YL+ N            +  LQ +++    L
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 497 EG--PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN-------- 546
           +     P  F  L  L ILD+S+NNI+  +       L+++E LDL +N L         
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANP 525

Query: 547 GKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
           G   + L  L  L + ++  N       E
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  206 bits (526), Expect = 1e-57
 Identities = 116/571 (20%), Positives = 201/571 (35%), Gaps = 42/571 (7%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
             L  LK   L    +   S   ++     +L  L L  N+   I            NL 
Sbjct: 70  QKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKI---KNNPFVKQKNLI 124

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQ-GFPSFKSLEHLHMSFAPI 120
            L L  + L  + L +   L  +L+ L +S  ++  +   +    +  SL+ L +S   I
Sbjct: 125 TLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 121 ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLP 180
                F      ++  L  L L+   LG + +  L   L +   ++ L ++++ L  +  
Sbjct: 184 ---KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSN 239

Query: 181 WCLANM--TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ--IPISLEPLFNH 236
                +  T+L +LD+S+N L   + +     L  +E   L  N+ Q     SL  LFN 
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN- 297

Query: 237 SRLKIFYADNNELNAEITQSHSLTAPNF------QLNRLLLSSSYGDGFIFPKFLYHQHD 290
             ++      +     I+ +      +F       L  L +  +   G I         +
Sbjct: 298 --VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLIN 354

Query: 291 LEFVDLSHIKMNGEFP---TWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSN 347
           L+++ LS+   +       T++   ++ L  L L  + I             L  LD+  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 348 NNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG--EIPE 405
           N     +  +    L ++F   +S N       +SF  +  LQ L L    L      P 
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 406 YLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR--------FVGEIPQSLS 457
                  NL  L LSNNN+          L  L+ L L+ N           G     L 
Sbjct: 475 PFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 458 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 517
             S L  L L +N           +L  L+ I +  N+L       F     L+ L++  
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

Query: 518 NNISGRLIPSTFS-NLKQIESLDLSYNKLNG 547
           N I+  +    F    + +  LD+ +N  + 
Sbjct: 594 NLITS-VEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (400), Expect = 8e-41
 Identities = 70/404 (17%), Positives = 138/404 (34%), Gaps = 51/404 (12%)

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
            S  + D S  +LT      P    T+I +L L+ N  +   +      +S+L       
Sbjct: 4   VSHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGF 58

Query: 247 NELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306
           N ++                             + P+       L+ ++L H +++    
Sbjct: 59  NTIS----------------------------KLEPELCQKLPMLKVLNLQHNELSQ-LS 89

Query: 307 TWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLF 366
                    L  L L+++SI      P    + L  LD+S+N             L +L 
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQ 148

Query: 367 SFNISTNALHGSIPSSFGNMKF--LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL 424
              +S N +               L+ L+LS+N +    P         L  L L+N  L
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQL 207

Query: 425 QGHM---FSRNFNLTNLKWLLLEGNRFVGEIPQSLS--KCSSLEGLYLNNNSLSGKIPRW 479
              +          T+++ L L  ++       +    K ++L  L L+ N+L+      
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 480 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG--------RLIPSTFSN 531
              L +L+Y  +  N+++         L  ++ L++  +            ++   +F  
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 532 LKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
           LK +E L++  N + G   +    L  L+  S++ +  S     
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (334), Expect = 2e-32
 Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 32/244 (13%)

Query: 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH 398
                D S+      +P    D+  ++   N++ N L     ++F     L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 399 LTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK 458
           ++   PE                             L  LK L L+ N       ++ + 
Sbjct: 61  ISKLEPELCQ-------------------------KLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518
           C++L  L+L +NS+             L  + + +N L         QL+ LQ L +S+N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 519 NISGRLIPSTFSNLK--QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEW 576
            I   L            ++ L+LS N++    P     +  L    +    L   + E 
Sbjct: 156 KIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 577 TAQF 580
               
Sbjct: 215 LCLE 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  220 bits (563), Expect = 2e-63
 Identities = 107/569 (18%), Positives = 201/569 (35%), Gaps = 61/569 (10%)

Query: 70  LHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQI 129
           + ++  +   +L  S KNL +S+  +  +     F SF  L+ L +S            I
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLS------RCEIQTI 67

Query: 130 IGES---MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANM 186
              +   +  L  L L+G+ +      +       L  LQ+L   + +L     + + ++
Sbjct: 68  EDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ--IPISLEPL----------- 233
            +L+ L+V+ N +          +LT++E L LS N  Q      L  L           
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 234 -------------FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFI 280
                        F   RL      NN  +  + ++        +++RL+L     +G +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 281 FPKFLY-----HQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIH 335
                          +E   L+++    +    L      + +  L++ +I         
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFS 301

Query: 336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLS 395
            +   + L++ N  F           L SL     ++N   G    S  ++  L+ LDLS
Sbjct: 302 YNFGWQHLELVNCKFGQF----PTLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLS 355

Query: 396 NNHLT--GEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
            N L+  G   +    G  +L  L LS N +   M S    L  L+ L  + +       
Sbjct: 356 RNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 454 QS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI-PVEFCQLDLLQ 511
            S      +L  L +++             L+ L+ + M  N  +    P  F +L  L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 512 ILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571
            LD+S   +   L P+ F++L  ++ L++S+N            L +L+V   + N++  
Sbjct: 474 FLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

Query: 572 EIPEWTAQFATFNESSY-EGNIFLCGLPL 599
              +    F +         N F C    
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  200 bits (511), Expect = 4e-56
 Identities = 103/576 (17%), Positives = 197/576 (34%), Gaps = 43/576 (7%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
               +L+   LS   I+       +  S   L+TL L+ N    +A+         ++L+
Sbjct: 49  FSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPIQSLALGA---FSGLSSLQ 103

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            L   E++L       I  L  +LK L++++  +      + F +  +LEHL +S     
Sbjct: 104 KLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS----- 157

Query: 122 LNTSFLQIIGESMPSLKYLSLSGS--ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSL 179
            +     I    +  L  + L      L  N    +  G    + L +L + +N    ++
Sbjct: 158 -SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 180 P-WCLANMTSLRILDVSFNQLTGS-----ISSSPLVHLTSIEMLILSDNHFQIPISLEP- 232
              C+  +  L +  +   +            S L  L ++ +      +    +     
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 233 -LFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDL 291
                + +  F   +  +      S+     NF    L L +     F   K       L
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSY-----NFGWQHLELVNCKFGQFPTLKLK----SL 327

Query: 292 EFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLP--IHPHRRLRFLDVSNNN 349
           + +  +  K    F    L +   LE L L  + +               L++LD+S N 
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPS---LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 350 FQGHMPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMKFLQILDLSNNHLTGEIPEYLA 408
                   +G  L  L   +   + L      S F +++ L  LD+S+ H          
Sbjct: 385 VITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 409 VGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYL 467
            G  +L  L ++ N+ Q +     F  L NL +L L   +     P + +  SSL+ L +
Sbjct: 443 -GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 468 NNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL-DLLQILDISDNNISGRLIP 526
           ++N+           L  LQ +    NH+      E       L  L+++ N+ +     
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 527 STF-SNLKQIESLDLSYNKLNGKMPHQLVELKTLEV 561
            +F   +K    L +   ++    P     +  L +
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (286), Expect = 1e-26
 Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 8/190 (4%)

Query: 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVG 450
                  +   +IP+ L     +  +L LS N L+       F+   L+ L L       
Sbjct: 11  TYQCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL 510
               +    S L  L L  N +          L+ LQ ++    +L          L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV----AY 566
           + L+++ N I    +P  FSNL  +E LDLS NK+       L  L  + + ++    + 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 567 NNLSGEIPEW 576
           N ++   P  
Sbjct: 187 NPMNFIQPGA 196

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  200 bits (511), Expect = 3e-56
 Identities = 90/510 (17%), Positives = 167/510 (32%), Gaps = 31/510 (6%)

Query: 79  ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES---MP 135
            +L  S + L  S+  +  +     F    +L  L ++            I  ++     
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLT------RCQIYWIHEDTFQSQH 81

Query: 136 SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVS 195
            L  L L+ + L      + +  L     L+ L      +       L N  +L  L + 
Sbjct: 82  RLDTLVLTANPL----IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 196 FNQLTGSISSSPLVHLTSIEMLILSDNHFQ--IPISLEPLFNHSRLKIFYADNNELNAEI 253
            N ++ SI          +++L   +N         +  L   + L +    N+     I
Sbjct: 138 SNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-----I 191

Query: 254 TQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQ-HDLEFVDLSHIKMNGEFPTWLLEN 312
                    +     L    +     IF          L       +      P      
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 313 -NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIS 371
               +E++ L             H    L+ LD++  +    +P  +   L +L    +S
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLS 309

Query: 372 TNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSR 431
            N        S  N   L  L +  N    E+         NL  L LS+++++      
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 432 N--FNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQY 488
               NL++L+ L L  N  +    ++  +C  LE L L    L  K  +    NL  L+ 
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 489 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG--RLIPSTFSNLKQIESLDLSYNKLN 546
           + + ++ L+      F  L  LQ L++  N+         ++   L ++E L LS+  L+
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 547 GKMPHQLVELKTLEVFSVAYNNLSGEIPEW 576
               H    LK +    +++N L+    E 
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  168 bits (428), Expect = 7e-45
 Identities = 87/502 (17%), Positives = 169/502 (33%), Gaps = 55/502 (10%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSI 90
            +L  L       + I       LHN   LE L L  + +    L         LK L  
Sbjct: 105 KALKHLFFIQTGISSID---FIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDF 160

Query: 91  SYCEVNGVLRGQGFPSFKSLEH--LHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILG 148
               ++  L  +   S +   +  L+++   I    + ++         + L+  G+   
Sbjct: 161 QNNAIHY-LSKEDMSSLQQATNLSLNLNGNDI----AGIEPGAFDSAVFQSLNFGGTQN- 214

Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANM--TSLRILDVSFNQLTGSISSS 206
                       ++  L      D D     P     +   S+  +++  +    +ISS+
Sbjct: 215 -LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSN 272

Query: 207 PLVHLTSIEMLILSDNHF-QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF- 264
                + ++ L L+  H  ++P     L   S LK      N+          ++A NF 
Sbjct: 273 TFHCFSGLQELDLTATHLSELP---SGLVGLSTLKKLVLSANK----FENLCQISASNFP 325

Query: 265 QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIND 324
            L  L +  +     +    L +  +L  +DLSH                 +ET    N 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD---------------IETSDCCNL 370

Query: 325 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIP-SSF 383
            +             L+ L++S N     +  E     P L   +++   L      S F
Sbjct: 371 QLRN--------LSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 384 GNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF---NLTNLKW 440
            N+  L++L+LS++ L     +    G   L  L L  N+       +      L  L+ 
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 441 LLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI 500
           L+L           + +    +  + L++N L+      L +L  + Y+ + +NH+   +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539

Query: 501 PVEFCQLDLLQILDISDNNISG 522
           P     L   + +++  N +  
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (289), Expect = 7e-27
 Identities = 43/241 (17%), Positives = 80/241 (33%), Gaps = 17/241 (7%)

Query: 341 RFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLT 400
           +  +  N      +P   G +  S      S N L     ++F  +  L  LDL+   + 
Sbjct: 15  KTYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 401 GEIPEYLAVGCVNLNSLALSNNNLQG---HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS 457
               +        L++L L+ N L        S       LK L              L 
Sbjct: 71  WIHEDTFQ-SQHRLDTLVLTANPLIFMAETALS---GPKALKHLFFIQTGISSIDFIPLH 126

Query: 458 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI--LDI 515
              +LE LYL +N +S           +L+ +   NN +      +   L       L++
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 516 SDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLV--ELKTLEVFSVAYNNLSGEI 573
           + N+I+G  I     +    +SL+    +    +   L    +++L + +    +     
Sbjct: 187 NGNDIAG--IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 574 P 574
           P
Sbjct: 245 P 245

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 3e-13
 Identities = 44/229 (19%), Positives = 79/229 (34%), Gaps = 25/229 (10%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
             L  L+   LS   I         + +   L +L+LSYN    +    T+       LE
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL---KTEAFKECPQLE 403

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            L L  + L +   QS       LK L++S+  ++       F    +L+HL++      
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGNHFP 462

Query: 122 LNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHL---------------- 165
                     +++  L+ L LS   L +         L  + H+                
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 166 ----QELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVH 210
                 L +A N +   LP  L  ++  R +++  N L  + S+   + 
Sbjct: 522 HLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE 570

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (500), Expect = 2e-54
 Identities = 73/549 (13%), Positives = 173/549 (31%), Gaps = 67/549 (12%)

Query: 53  ELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEH 112
            L++   +  L+L+       +  +I  L   L+ L++     +G    +     K +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQL-TELEVLALGS---HGEKVNERLFGPKGISA 131

Query: 113 LHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRI-LDQGLCSLVHLQELRMA 171
                    +   + +   +  P   +  L    + ++  +  + +     +   ++   
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 172 DNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLE 231
            N++   +   +  +T LR   +  +            +         +  +    +  +
Sbjct: 192 SNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN----SEYAQQYKTEDLKWD 246

Query: 232 PLFNHSRLKIFYADNN---ELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQ 288
            L + + ++++  +     +L   +     +   N   NR +      D +         
Sbjct: 247 NLKDLTDVEVY--NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN 348
             ++ + + +             NN  L+T   +  S+           ++L  L+   N
Sbjct: 305 EKIQIIYIGY-------------NN--LKTFP-VETSLQK--------MKKLGMLECLYN 340

Query: 349 NFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA 408
             +G +P   G     L S N++ N +     +  G  + ++ L  ++N L   IP    
Sbjct: 341 QLEGKLP-AFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397

Query: 409 VG-CVNLNSLALSNNNLQG-------HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCS 460
                 ++++  S N +          +    F   N+  + L  N+      +  S  S
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 461 SLEGLYLNNNSLSG-------KIPRWLGNLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQI 512
            L  + L  N L+               N   L  I +  N L           L  L  
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 513 LDISDNNISGRLIPSTFSNLKQIESL------DLSYNKLNGKMPHQLVELKTLEVFSVAY 566
           +D+S N+ S    P+   N   ++        D   N+   + P  +    +L    +  
Sbjct: 518 IDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 567 NNLSGEIPE 575
           N++   + E
Sbjct: 576 NDIRK-VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  169 bits (430), Expect = 7e-45
 Identities = 54/416 (12%), Positives = 129/416 (31%), Gaps = 62/416 (14%)

Query: 183 LANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242
           L +   +  L +     +G +  + +  LT +E+L L  +  ++   L            
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLF----------- 124

Query: 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMN 302
                     I+ + S                         F+ +    +F DL    +N
Sbjct: 125 ------GPKGISANMSDEQKQKMRMHYQ-----------KTFVDYDPREDFSDLIKDCIN 167

Query: 303 GEFPTW----LLENNAKLETLFLINDSIGGPFRLP--IHPHRRLRFLDVSNNNFQGHMPV 356
            +              K   +  ++++I     +   +    +LR   + N+ F      
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENIC 224

Query: 357 EIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS 416
           E  +        N      + +    + N+K L  +++ N     ++P +L      +  
Sbjct: 225 EAWENE------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQL 277

Query: 417 LALSNNNL--------QGHMFSRNFNLTNLKWLLLEGNRF-VGEIPQSLSKCSSLEGLYL 467
           + ++ N               +       ++ + +  N      +  SL K   L  L  
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337

Query: 468 NNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS 527
             N L GK+P   G+  +L  + +  N +           + ++ L  + N +       
Sbjct: 338 LYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396

Query: 528 TFSNLKQIESLDLSYNKLNG-------KMPHQLVELKTLEVFSVAYNNLSGEIPEW 576
              ++  + ++D SYN++          +     +   +   +++ N +S    E 
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  167 bits (426), Expect = 2e-44
 Identities = 76/566 (13%), Positives = 156/566 (27%), Gaps = 118/566 (20%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
                                + +S         +    NN T +    ++ +   T L 
Sbjct: 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV----SKAVMRLTKLR 209

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
              +  S      +          +N +  Y +         + + K L  + +      
Sbjct: 210 QFYMGNSPFVAENICEA------WENENSEYAQQYKTE-DLKWDNLKDLTDVEVY----- 257

Query: 122 LNTSFLQIIGES---MPSLKYLSLSG----SILGTNSSRILDQGLCSLVHLQELRMADND 174
            N   L  +      +P ++ ++++     S                   +Q + +  N+
Sbjct: 258 -NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 175 LR-GSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISLEP 232
           L+   +   L  M  L +L+  +NQL G + +        +  L L+ N    IP +   
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANF-- 372

Query: 233 LFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLE 292
                +++     +N+L              F    +                     + 
Sbjct: 373 CGFTEQVENLSFAHNKL--------KYIPNIFDAKSV-------------------SVMS 405

Query: 293 FVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG 352
            +D S+ ++                    ++ +              +  +++SNN    
Sbjct: 406 AIDFSYNEIGSVDGKNFDP----------LDPTPFK--------GINVSSINLSNNQISK 447

Query: 353 HMPVEIGDILPSLFSFNISTNALHG-------SIPSSFGNMKFLQILDLSNNHLTGEIPE 405
               E+      L S N+  N L             +F N   L  +DL  N LT    +
Sbjct: 448 FPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 406 YLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGL 465
           + A     L  + LS N+                             P      S+L+G 
Sbjct: 507 FRATTLPYLVGIDLSYNSFSK-------------------------FPTQPLNSSTLKGF 541

Query: 466 YLNN------NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 519
            + N      N    + P  +     L  + + +N +   +  +      + +LDI DN 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNP 598

Query: 520 ISGRLIPSTFSNLKQIESLDLSYNKL 545
               +  S      +     L Y+K 
Sbjct: 599 NIS-IDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 8e-23
 Identities = 47/415 (11%), Positives = 117/415 (28%), Gaps = 76/415 (18%)

Query: 2   GGLRKLKSFGLS------GVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELH 55
             L +++   ++      G  ++D  + L        +  + + YNN     + T   L 
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET--SLQ 327

Query: 56  NFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHM 115
               L  L    + L    L +  S    L +L+++Y ++  +         + +E+L  
Sbjct: 328 KMKKLGMLECLYNQLE-GKLPAFGSE-IKLASLNLAYNQITEIPANF-CGFTEQVENLSF 384

Query: 116 SFAPIALNTSFLQIIGESMPSLKYLSLSG---SILGTNSSRILDQGLCSLVHLQELRMAD 172
           +   +    +      +S+  +  +  S      +   +   LD      +++  + +++
Sbjct: 385 AHNKLKYIPNIFDA--KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 173 NDLRGSLPWCLANMTSLRILDVSFNQLTG------SISSSPLVHLTSIEMLILSDNHFQ- 225
           N +        +  + L  +++  N LT          +    +   +  + L  N    
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 226 IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFL 285
           +            L       N  +                              FP   
Sbjct: 503 LSDDFR-ATTLPYLVGIDLSYNSFSK-----------------------------FPTQP 532

Query: 286 YHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDV 345
            +   L+   + + +          + N  L       + I             L  L +
Sbjct: 533 LNSSTLKGFGIRNQR--------DAQGNRTLRE---WPEGITL--------CPSLTQLQI 573

Query: 346 SNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLT 400
            +N+ +  +  +I    P++   +I  N       S         +  L  +   
Sbjct: 574 GSNDIRK-VNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 3e-21
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 44/236 (18%)

Query: 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN 421
             + ++FN   +        S  +   +  L L     +G +P+ +      L  LAL +
Sbjct: 56  PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGS 114

Query: 422 NNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 481
           +  + +                         P+ +S   S E               +  
Sbjct: 115 HGEKVN--------------------ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154

Query: 482 --NLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLD 539
             + + L    + ++  +  I            +    NNI+   +      L ++    
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFY 212

Query: 540 LSYNKLNGKMPHQLVE-------------------LKTLEVFSVAYNNLSGEIPEW 576
           +  +    +   +  E                   LK L    V       ++P +
Sbjct: 213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  193 bits (493), Expect = 1e-53
 Identities = 109/553 (19%), Positives = 201/553 (36%), Gaps = 37/553 (6%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
             S   +DLS+N    +    +    NF+ L++L L    +     ++   L   L NL 
Sbjct: 31  PSSTKNIDLSFNPLKIL---KSYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLI 86

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGT 149
           ++   +     G  F    SLE+L      +    S        + +LK L+++ + +  
Sbjct: 87  LTGNPIQSFSPGS-FSGLTSLENLVAVETKL---ASLESFPIGQLITLKKLNVAHNFI-- 140

Query: 150 NSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRI----LDVSFNQLTGSISS 205
             S  L     +L +L  + ++ N ++      L  +         LD+S N +   I  
Sbjct: 141 -HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQD 198

Query: 206 SPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEI---TQSHSLTAP 262
                +  +  L L  N     I    L N + L +      E   E        S+   
Sbjct: 199 QAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257

Query: 263 NFQLNRLLLSSSYGDGF-IFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFL 321
              +       +Y + F       +   ++  + L+ + +        +  + K ++L +
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSI 314

Query: 322 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS 381
           I   +      P      L+ L ++ N             LPSL   ++S NAL  S   
Sbjct: 315 IRCQLKQ---FPTLDLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 382 SFGNMKF--LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNL 438
           S+ ++    L+ LDLS N     I     +G   L  L   ++ L+       F +L  L
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQYIIMPNNHLE 497
            +L +       +        +SL  L +  NS           N T L ++ +    LE
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 498 GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK 557
                 F  L  LQ+L++S NN+   L  S ++ L  + +LD S+N++           K
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 558 TLEVFSVAYNNLS 570
           +L  F++  N+++
Sbjct: 546 SLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  190 bits (484), Expect = 2e-52
 Identities = 102/530 (19%), Positives = 181/530 (34%), Gaps = 31/530 (5%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
           S  +F  L  LDLS      I        H   +L  L L  + +      S + L  SL
Sbjct: 51  SFSNFSELQWLDLSRCEIETIEDKA---WHGLHHLSNLILTGNPIQSFSPGSFSGL-TSL 106

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMS---FAPIALNTSFLQIIGESMPSLKYLSL 142
           +NL     ++   L         +L+ L+++        L   F      ++ +L ++ L
Sbjct: 107 ENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYF-----SNLTNLVHVDL 160

Query: 143 SGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGS 202
           S + + T +   L     +      L M+ N +          +  L  L +  N  + +
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN 219

Query: 203 ISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP 262
           I  + L +L  + +  L    F+   +LE         +     +E     T   S    
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279

Query: 263 NFQ----LNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLET 318
            F     ++ + L+             +     + + +   ++  +FPT  L     L++
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLEDVPKHFK---WQSLSIIRCQLK-QFPTLDLPF---LKS 332

Query: 319 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMP-VEIGDILPSLFSFNISTNALHG 377
           L L  +     F         L +LD+S N                SL   ++S N    
Sbjct: 333 LTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI- 389

Query: 378 SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTN 437
            + ++F  ++ LQ LD  ++ L         +    L  L +S  N +         LT+
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 438 LKWLLLEGNRFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
           L  L + GN F      +  +  ++L  L L+   L          L RLQ + M +N+L
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 497 EGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
                  + QL  L  LD S N I            K +   +L+ N + 
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (481), Expect = 5e-52
 Identities = 88/518 (16%), Positives = 179/518 (34%), Gaps = 42/518 (8%)

Query: 75  LQSI-ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES 133
           L  +   +  S KN+ +S+  +  +     F +F  L+ L +S            I  ++
Sbjct: 23  LSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLS------RCEIETIEDKA 75

Query: 134 ---MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLR 190
              +  L  L L+G+ +              L  L+ L   +  L     + +  + +L+
Sbjct: 76  WHGLHHLSNLILTGNPI----QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 191 ILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ--IPISLEPLFN-HSRLKIFYADNN 247
            L+V+ N +      +   +LT++  + LS N+ Q      L+ L              N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 248 ELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPT 307
                I           +L+ L L  ++    I    L +   L    L   +   E   
Sbjct: 192 P----IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 308 WLLENNA-------KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD 360
            + E +         ++   L   +      +  H    +  + ++  + +    +E   
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVP 304

Query: 361 ILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS 420
                 S +I    L         ++ FL+ L L+ N  +    +   V   +L+ L LS
Sbjct: 305 KHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLS 358

Query: 421 NNNLQ--GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 478
            N L   G     +    +L+ L L  N  +  +  +      L+ L   +++L      
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 479 W-LGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIES 537
               +L +L Y+ +   + +      F  L  L  L ++ N+     + + F+N   +  
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 538 LDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
           LDLS  +L          L  L++ ++++NNL      
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  149 bits (379), Expect = 2e-38
 Identities = 77/449 (17%), Positives = 144/449 (32%), Gaps = 18/449 (4%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
           G L  LK   ++   I    KL     +  +L  +DLSYN    I +   Q L     + 
Sbjct: 125 GQLITLKKLNVAHNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            L+LD S   I  +Q  A     L  L++     +  +      +   L    +      
Sbjct: 184 -LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 122 LNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLP 180
              +        M  L  +++    L   +    D      L ++  + +A   +     
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYL 300

Query: 181 WCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLK 240
             +      + L +   QL       P + L  ++ L L+ N   I            L 
Sbjct: 301 EDVPKHFKWQSLSIIRCQLK----QFPTLDLPFLKSLTLTMNKGSIS---FKKVALPSLS 353

Query: 241 IFYADNNELNAEITQSHSLTAPNFQLNRLL-LSSSYGDGFIFPKFLYHQHDLEFVDLSHI 299
                 N     ++ S   +  +   N L  L  S+    I         +L+ +D  H 
Sbjct: 354 YLDLSRNA----LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409

Query: 300 KMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIG 359
            +          +  KL  L +   +    F         L  L ++ N+F+ +    + 
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
               +L   ++S   L       F  +  LQ+L++S+N+L      +      +L++L  
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTLDC 528

Query: 420 SNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448
           S N ++           +L +  L  N  
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (260), Expect = 2e-23
 Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 11/174 (6%)

Query: 377 GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG---HMFSRNF 433
           GS+      +  +      +  L+ ++P+ +     +  ++ LS N L+    + FS   
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFS--- 53

Query: 434 NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN 493
           N + L+WL L          ++      L  L L  N +    P     LT L+ ++   
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547
             L         QL  L+ L+++ N I    +P+ FSNL  +  +DLSYN +  
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 510 LQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569
            + +D+S N +   L   +FSN  +++ LDLS  ++          L  L    +  N +
Sbjct: 34  TKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 570 SGEIPEW 576
               P  
Sbjct: 93  QSFSPGS 99

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (453), Expect = 3e-47
 Identities = 80/574 (13%), Positives = 158/574 (27%), Gaps = 88/574 (15%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
            + +   +  L L+              +   T L+ L+    S  +   +       + 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRV---PDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTP 373

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGS 145
                    +    +       + L    +    I  N     I  +S  SLK   +   
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 146 ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
              TN    + + +  L  LQ +  A++                   +  + +   +   
Sbjct: 434 ---TNRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEEL 485

Query: 206 SPLVHLTSIEMLILSDNHF--QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
           S   +L  +  + L +     Q+P  L  L     L+      N          S     
Sbjct: 486 S-WSNLKDLTDVELYNCPNMTQLPDFLYDL---PELQSLNIACNRGI-------SAAQLK 534

Query: 264 FQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN 323
               RL                     ++   + +             NN  LE      
Sbjct: 535 ADWTRL------------ADDEDTGPKIQIFYMGY-------------NN--LEEF---- 563

Query: 324 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSF 383
                P    +    +L  LD  +N  + H+    G     L    +  N +        
Sbjct: 564 -----PASASLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLTDLKLDYNQIEEIPEDFC 615

Query: 384 GNMKFLQILDLSNNHLTGEIPEYLAVG-CVNLNSLALSNNNLQGH-----MFSRNFNLTN 437
                ++ L  S+N L   IP          + S+  S N +            ++   N
Sbjct: 616 AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS-------GKIPRWLGNLTRLQYII 490
              + L  N       +  +  S +  + L+NN ++               N   L  I 
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 491 MPNNHLEG-PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY------N 543
           +  N L           L  L  +D+S N  S    P+   N  Q+++  + +      N
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 544 KLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWT 577
           ++  + P  +    +L    +  N++  ++ E  
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  175 bits (444), Expect = 5e-46
 Identities = 83/546 (15%), Positives = 162/546 (29%), Gaps = 101/546 (18%)

Query: 28  GSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN 87
                LN  DL  +           +  +  +L+   +   +  I+ +         L+ 
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 88  LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL 147
           +  +            +    S          ++ +         ++  L  + L     
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS---------NLKDLTDVELYN--- 500

Query: 148 GTNSSRILDQGLCSLVHLQELRMADNDLRG---------SLPWCLANMTSLRILDVSFNQ 198
              +   L   L  L  LQ L +A N              L         ++I  + +N 
Sbjct: 501 -CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 199 LTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHS 258
           L    +S+ L  +  + +L    N  +    LE    + +L     D N++         
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQIEE------- 609

Query: 259 LTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLET 318
                                I   F      +E +  SH K+      +  ++   + +
Sbjct: 610 ---------------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 319 LFLINDSIGG-----PFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN 373
           +    + IG         +  +       + +S N  Q   P E+      + +  +S N
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNN 707

Query: 374 AL-------HGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG 426
            +             ++ N   L  +DL  N LT    ++ A     L+++ +S N    
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS- 766

Query: 427 HMFSRNFNLTNLKWL------LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 480
              ++  N + LK          EGNR + + P  ++ C SL  L + +N +  K+   L
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825

Query: 481 GNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDL 540
                                        L ILDI+DN      + S    ++      L
Sbjct: 826 --------------------------TPQLYILDIADNPNISIDVTSVCPYIEA-GMYVL 858

Query: 541 SYNKLN 546
            Y+K  
Sbjct: 859 LYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 49/415 (11%), Positives = 115/415 (27%), Gaps = 78/415 (18%)

Query: 2   GGLRKLKSFGLSG-------VGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL 54
             L +L+S  ++            D ++L     + P +    + YNN  +   + +  L
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS--L 569

Query: 55  HNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLH 114
                L  L        +  L++  +    L +L + Y ++   +          +E L 
Sbjct: 570 QKMVKLGLLDC--VHNKVRHLEAFGTN-VKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLG 625

Query: 115 MSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRIL-DQGLCSLVHLQELRMADN 173
            S   +    +      +S+  +  +  S + +G+    I         ++   + ++ N
Sbjct: 626 FSHNKLKYIPNIFNA--KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

Query: 174 DLRGSLPWCLANMTSLRILDVSFNQLT------GSISSSPLVHLTSIEMLILSDNHFQ-I 226
           +++       A  + +  + +S N +T               +   +  + L  N    +
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743

Query: 227 PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLY 286
                       L       N  ++                             FP    
Sbjct: 744 SDDFR-ATTLPYLSNMDVSYNCFSS-----------------------------FPTQPL 773

Query: 287 HQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVS 346
           +   L+   + H            E N  L         I             L  L + 
Sbjct: 774 NSSQLKAFGIRH--------QRDAEGNRILRQ---WPTGITT--------CPSLIQLQIG 814

Query: 347 NNNFQGHMPVEIGDILPSLFSFNISTNAL-HGSIPSSFGNMKFLQI-LDLSNNHL 399
           +N+ +  +  +   + P L+  +I+ N      + S    ++     L       
Sbjct: 815 SNDIR-KVDEK---LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 8e-13
 Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 30/214 (14%)

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFV 449
             + +        I +Y A+  +   +L   N        +   +  N      E + + 
Sbjct: 255 ANVPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWG 312

Query: 450 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL 509
            +    L     + GL L      G++P  +G LT L+ +    +       +   +   
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 510 LQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG---------------------- 547
             + +   + I            +++   DL  + +N                       
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 548 ------KMPHQLVELKTLEVFSVAYNNLSGEIPE 575
                  +   +  L  L++   A +  + +   
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (431), Expect = 2e-44
 Identities = 125/680 (18%), Positives = 227/680 (33%), Gaps = 103/680 (15%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
             +   L LS+N    +  ++      F  L                        L+ L 
Sbjct: 23  LNTTERLLLSFNYIRTVTASS------FPFL----------------------EQLQLLE 54

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPI-ALNTSFLQIIGESMPSLKYLSLSGSILG 148
           +        +  + F +  +L  L +  + I  L+    Q     +  L  L L    L 
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ----GLFHLFELRLYFCGL- 109

Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILDVSFNQLTGSISSSP 207
            + + + D    +L  L  L ++ N +R   L      + SL+ +D S NQ+   +    
Sbjct: 110 -SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHE 167

Query: 208 LVHLT--SIEMLILSDNHFQIPISLEPL-----FNHSRLKIFYADNNELNAEITQSHSLT 260
           L  L   ++    L+ N     +S++       F +  L+I     N    +IT + S  
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227

Query: 261 APNFQLNRLLLSSSYGDGFIFPKFLYHQHD----------LEFVDLSHIKMNGEFPTWLL 310
               Q   L+L+            +               +  +DLSH  +     + + 
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVF 286

Query: 311 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI 370
           E    L+ L L  + I        +    L+ L++S N     +       LP +   ++
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDL 345

Query: 371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFS 430
             N +      +F  ++ LQ LDL +N LT  I         ++  + LS N L   +  
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-----FIPSIPDIFLSGNKLV-TLPK 398

Query: 431 RNFNLTNLKWLLLEGNRFVG-EIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQY 488
            N     +    L  NR    +I   L +   L+ L LN N  S             L+ 
Sbjct: 399 INLTANLIH---LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 489 IIMPNNHLEGPIPVE-----FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543
           + +  N L+     E     F  L  LQ+L ++ N ++  L P  FS+L  +  L L+ N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSN 514

Query: 544 KLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP--- 600
           +L     + L     LE+  ++ N L          F + +      N F+C   L    
Sbjct: 515 RLTVLSHNDL--PANLEILDISRNQLL-APNPDV--FVSLSVLDITHNKFICECELSTFI 569

Query: 601 -----------------ICISPATMPEASIGN----EQDDNLIDMDSFFITFTTSYIIVI 639
                             C+ P +    S+ +      D+  +     F  F    + + 
Sbjct: 570 NWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLT 629

Query: 640 FGIVIVLYVNSYWRRRWFYF 659
             ++ +L V  +    +  +
Sbjct: 630 LFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  155 bits (394), Expect = 1e-39
 Identities = 95/504 (18%), Positives = 167/504 (33%), Gaps = 67/504 (13%)

Query: 104 FPSFKSLEHLHMSFAPIA--LNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCS 161
                + E L +SF  I     +SF       +  L+ L L           I  +   +
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSF-----PFLEQLQLLELGSQYT---PLTIDKEAFRN 71

Query: 162 LVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLT-GSISSSPLVHLTSIEMLILS 220
           L +L+ L +  + +    P     +  L  L + F  L+   +      +L ++  L LS
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 221 DNHFQIPISLEPLFNH-SRLKIFYADNNELNAEITQS-HSLTAPNFQ---LNRLLLSSSY 275
            N  +  + L P F   + LK     +N++          L         L    L S  
Sbjct: 132 KNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 276 GDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIH 335
              +      +    LE +D+S      +         +K +   LI             
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL------------ 238

Query: 336 PHRRLRFLDVSNNNFQGHMPVEI--GDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
               +       +N +         G    S+   ++S   +       F  +K L++L+
Sbjct: 239 -AHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 394 LSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEI 452
           L+ N +  +I +    G  NL  L LS N L   ++S NF  L  + ++ L+ N      
Sbjct: 297 LAYNKIN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 453 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG-------------- 498
            Q+      L+ L L +N+L+      +  +  +  I +  N L                
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409

Query: 499 -------PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH 551
                   I     ++  LQIL ++ N  S      T S    +E L L  N L      
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 552 QLVE-----LKTLEVFSVAYNNLS 570
           +L       L  L+V  + +N L+
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  126 bits (318), Expect = 3e-30
 Identities = 73/409 (17%), Positives = 136/409 (33%), Gaps = 37/409 (9%)

Query: 150 NSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLV 209
                L Q    L   + L ++ N +R         +  L++L++       +I      
Sbjct: 11  YRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70

Query: 210 HLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRL 269
           +L ++ +L L  +     +  +       L         L+  + +          L RL
Sbjct: 71  NLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF-RNLKALTRL 128

Query: 270 LLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLEN--NAKLETLFL----IN 323
            LS +              + L+ +D S  ++        LE      L    L    + 
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 324 DSIGGPFRLPIHP--HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS 381
             +   +   ++P  +  L  LDVS N +             ++      +NA+  S   
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGW-------------TVDITGNFSNAISKSQAF 234

Query: 382 SFGNMKFLQILDLSNNHLTGEIPEYLAVGC-VNLNSLALSNNNL---QGHMFSRNFNLTN 437
           S      +       +++        A     ++  L LS+  +      +F     L +
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE---TLKD 291

Query: 438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497
           LK L L  N+      ++     +L+ L L+ N L          L ++ YI +  NH+ 
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 498 GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
                 F  L+ LQ LD+ DN +      +T   +  I  + LS NKL 
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 465 LYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL 524
            +    +L+ ++P+ L    RL    +  N++       F  L+ LQ+L++        +
Sbjct: 9   AFYRFCNLT-QVPQVLNTTERLL---LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 525 IPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI 573
               F NL  +  LDL  +K+    P     L  L    + +  LS  +
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (408), Expect = 2e-42
 Identities = 110/551 (19%), Positives = 207/551 (37%), Gaps = 43/551 (7%)

Query: 34  NTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYC 93
            T      NF  I        +   + + L L  + L   L       FP L+ L +S C
Sbjct: 10  ITYQCMELNFYKI------PDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC 62

Query: 94  EVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSR 153
           E+   +    + S   L  L ++  PI    S        + SL+ L    + L    + 
Sbjct: 63  EIQ-TIEDGAYQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQKLVAVETNL----AS 114

Query: 154 ILDQGLCSLVHLQELRMADNDLR-GSLPWCLANMTSLRILDVSFNQLTGSISSS--PLVH 210
           + +  +  L  L+EL +A N ++   LP   +N+T+L  LD+S N++     +    L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 211 LTSIEM-LILSDNHFQIPISLEP-LFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNR 268
           +  + + L LS N       ++P  F   RL      NN  +  + ++        +++R
Sbjct: 175 MPLLNLSLDLSLNPMN---FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 269 LLLSSSYGDGFIFPKFLYH-----QHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN 323
           L+L     +G +               +E   L+++    +    L      + +  L++
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 324 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSF 383
            +I          +   + L++ N  F     ++    L SL     ++N    +   S 
Sbjct: 292 VTIERV--KDFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSNKGGNAF--SE 343

Query: 384 GNMKFLQILDLSNNHLTG-EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWL 441
            ++  L+ LDLS N L+          G  +L  L LS N +     S NF  L  L+ L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHL 401

Query: 442 LLEGNRFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI 500
             + +        S      +L  L +++             L+ L+ + M  N  +   
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 501 PVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL 559
             + F +L  L  LD+S   +  +L P+ F++L  ++ L+++ N+L          L +L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 560 EVFSVAYNNLS 570
           +   +  N   
Sbjct: 521 QKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  150 bits (380), Expect = 1e-38
 Identities = 100/506 (19%), Positives = 187/506 (36%), Gaps = 31/506 (6%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
           S  SFP L  LDLS      I         + ++L  L L  + +  SL     S   SL
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGA---YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 102

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSF---APIALNTSFLQIIGESMPSLKYLSL 142
           + L      +   L        K+L+ L+++        L   F      ++ +L++L L
Sbjct: 103 QKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDL 156

Query: 143 SGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGS 202
           S + + +     L       +    L ++ N +    P     +  L  L +  N  + +
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN 215

Query: 203 ISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNH--SRLKIFYADNNELNAEITQSHSLT 260
           +  + +  L  +E+  L    F+   +LE         L     +   L         + 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 261 APNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLF 320
                L  +   S         K   +    + ++L + K   +FPT  L++   L+ L 
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPTLKLKS---LKRLT 331

Query: 321 LINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG-HMPVEIGDILPSLFSFNISTNALHGSI 379
             ++  G  F         L FLD+S N         +      SL   ++S N +  ++
Sbjct: 332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 380 PSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG---HMFSRNFNLT 436
            S+F  ++ L+ LD  +++L       + +   NL  L +S+ + +     +F+    L+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLS 445

Query: 437 NLKWLLLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495
           +L+ L + GN F         ++  +L  L L+   L    P    +L+ LQ + M +N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 496 LEGPIPVEFCQLDLLQILDISDNNIS 521
           L+      F +L  LQ + +  N   
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (288), Expect = 6e-27
 Identities = 79/427 (18%), Positives = 149/427 (34%), Gaps = 19/427 (4%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
           G L+ LK   ++   I+   KL +   +  +L  LDLS N    I  T  + LH    L 
Sbjct: 121 GHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            L+LD S   ++ +Q  A     L  L++     +  +          LE   +      
Sbjct: 180 -LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 122 LNTSFLQIIGESMPSLKYLSLSGSILGTN--SSRILDQGLCSLVHLQELRMADNDLRGSL 179
              +  +    ++  L  L++    L         +      L ++    +    +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 180 PW-CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSR 238
            +        L +++  F Q        P + L S++ L  + N      S   L +   
Sbjct: 299 DFSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGNAFSEVDLPS--- 348

Query: 239 LKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSH 298
           L+      N L+ +   S S       L  L LS +                LE +D  H
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQH 405

Query: 299 IKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEI 358
             +       +  +   L  L + +      F    +    L  L ++ N+FQ +   +I
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 359 GDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA 418
              L +L   ++S   L    P++F ++  LQ+L++++N L   +P+ +     +L  + 
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIW 524

Query: 419 LSNNNLQ 425
           L  N   
Sbjct: 525 LHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 15/221 (6%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
           ++  S  + ++S N L      SF +   LQ+LDLS   +   I +       +L++L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 420 SNNNLQG---HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL-SGK 475
           + N +Q      FS    L++L+ L+             +    +L+ L + +N + S K
Sbjct: 84  TGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 476 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI----LDISDNNISGRLIPSTFSN 531
           +P +  NLT L+++ + +N ++     +   L  + +    LD+S N ++  + P  F  
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 532 LKQIESLDLSYNKLNGKMPHQLVE-LKTLEVFSVAYNNLSG 571
           ++ +  L L  N  +  +    ++ L  LEV  +       
Sbjct: 200 IR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 54/203 (26%), Positives = 75/203 (36%), Gaps = 11/203 (5%)

Query: 3   GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEY 62
            L  L+   LS  G+       QS     SL  LDLS+N    +    +        LE+
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM----SSNFLGLEQLEH 400

Query: 63  LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL 122
           L    S+L      S+     +L  L IS+        G  F    SLE L M+      
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQE 459

Query: 123 NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWC 182
             +FL  I   + +L +L LS   L   S    +    SL  LQ L MA N L+      
Sbjct: 460 --NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN----SLSSLQVLNMASNQLKSVPDGI 513

Query: 183 LANMTSLRILDVSFNQLTGSISS 205
              +TSL+ + +  N    S   
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCPR 536

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (370), Expect = 2e-37
 Identities = 99/533 (18%), Positives = 191/533 (35%), Gaps = 63/533 (11%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
             ++ +LDLS+N  T I      +L    NL+ L L  S ++     +  SL  SL++L 
Sbjct: 25  TAAMKSLDLSFNKITYI---GHGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLD 80

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMS---FAPIALNTSFLQIIGESMPSLKYLSLSGSI 146
           +S   ++ +     F    SL++L++    +  + + + F      ++ +L+ L +    
Sbjct: 81  LSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLF-----PNLTNLQTLRIGNVE 134

Query: 147 LGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSS 206
                S I       L  L EL +    LR      L ++  +  L +  ++    +   
Sbjct: 135 T---FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEI 190

Query: 207 PLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL 266
               L+S+  L L D +        PL                +                
Sbjct: 191 FADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGS---------------- 233

Query: 267 NRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSH--IKMNGEFPTWLLENNAKLETLFLIND 324
             +L   S+ +     +++    ++EF D +   +       + ++    K+ET+ +   
Sbjct: 234 --VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 325 SIGGPFRLPIHPH-----RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSI 379
            I   +             +++ + V N+     +P      L SL   ++S N +    
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 380 ---PSSFGNMKFLQILDLSNNHLTG-EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNL 435
               +  G    LQ L LS NHL   +    + +   NL SL +S N     M       
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 436 TNLKWLLLEGNRFVGEIPQSLSKC--SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN 493
             +++L L          + +  C   +LE L ++NN+L          L RLQ + +  
Sbjct: 410 EKMRFLNLSSTGI-----RVVKTCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISR 460

Query: 494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
           N L+           +L ++ IS N +   +    F  L  ++ + L  N  +
Sbjct: 461 NKLKTLPDASL--FPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (339), Expect = 2e-33
 Identities = 79/488 (16%), Positives = 170/488 (34%), Gaps = 50/488 (10%)

Query: 107 FKSLEHLHMSFAPIAL--NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH 164
             +++ L +SF  I    +         +  +L+ L L  S +    + I      SL  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDL-----RACANLQVLILKSSRI----NTIEGDAFYSLGS 75

Query: 165 LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF 224
           L+ L ++DN L          ++SL+ L++  N       +S   +LT+++ L + +   
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 225 QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKF 284
              I        + L         L                ++ L L  S    F+   F
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLR---NYQSQSLKSIRDIHHLTLHLS-ESAFLLEIF 191

Query: 285 LYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRL---- 340
                 + +++L    +   F    L  +     +  +            +   +L    
Sbjct: 192 ADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 341 ------RFLDVSNNNFQGHMPVEIGDI-------LPSLFSFNISTNALHGSIPSSFGNMK 387
                  F D + N      P E   +         ++   +I    L   + + +  ++
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLE 444
            ++ + + N+ +   +P   +    +L  L LS N +        +      +L+ L+L 
Sbjct: 311 KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 445 GNRF--VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 502
            N    + +  + L    +L  L ++ N+    +P       +++++ + +  +     V
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---V 425

Query: 503 EFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVF 562
           + C    L++LD+S+NN+      S    L +++ L +S NKL  K          L V 
Sbjct: 426 KTCIPQTLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKL--KTLPDASLFPVLLVM 478

Query: 563 SVAYNNLS 570
            ++ N L 
Sbjct: 479 KISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (263), Expect = 6e-24
 Identities = 58/397 (14%), Positives = 122/397 (30%), Gaps = 43/397 (10%)

Query: 188 SLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNN 247
           +  + D      T    S P     +++ L LS N     I    L   + L++    ++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 248 ELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPT 307
            +N                             I     Y    LE +DLS   ++    +
Sbjct: 61  RIN----------------------------TIEGDAFYSLGSLEHLDLSDNHLS-SLSS 91

Query: 308 WLLENNAKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLF 366
                 + L+ L L+ +                L+ L + N      +       L SL 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 367 SFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG 426
              I   +L      S  +++ +  L L  +     + E  A    ++  L L + NL  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

Query: 427 HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL 486
             FS          +     R      +S ++   L    L  + +         + T  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLN 264

Query: 487 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
                  +  +    +   +   ++ L I    +    + + +S L++++ + +  +K+ 
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVF 323

Query: 547 GKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF 583
                    LK+LE   ++ N +  E  + +A    +
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 72/415 (17%), Positives = 138/415 (33%), Gaps = 42/415 (10%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
             L  L++  +                   SLN L++   +  +     +Q L +  ++ 
Sbjct: 120 PNLTNLQTLRIGN-VETFSEIRRIDFAGLTSLNELEIKALSLRNYQ---SQSLKSIRDIH 175

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGV----------LRGQGFPSFKSLE 111
           +LTL  S     LL+  A +  S++ L +    +                    +F+   
Sbjct: 176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 112 HLHMSFAPI-ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRM 170
               SF  +  L    L++            L G    + S  + + G    V ++ L +
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 171 ADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISL 230
               L   L    + +  ++ + V  +++   +  S   HL S+E L LS+N        
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 231 EPLFNH--SRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLS----SSYGDGFIFPKF 284
                     L+      N L   + ++  +      L  L +S        D   +P+ 
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE- 410

Query: 285 LYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 344
                 + F++LS   +     T + +    LE L + N+++       +    RL+ L 
Sbjct: 411 -----KMRFLNLSSTGIR-VVKTCIPQT---LEVLDVSNNNLD---SFSLFLP-RLQELY 457

Query: 345 VSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL 399
           +S N  +    +    + P L    IS N L       F  +  LQ + L  N  
Sbjct: 458 ISRNKLKT---LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 24/200 (12%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLF---PSL 85
              SL  LDLS N   +  +  +     + +L+ L L  S  H+  +Q    +     +L
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL--SQNHLRSMQKTGEILLTLKNL 389

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGS 145
            +L IS    + +         + +  L++S      +T    +      +L+ L +S +
Sbjct: 390 TSLDISRNTFHPMPD--SCQWPEKMRFLNLS------STGIRVVKTCIPQTLEVLDVSNN 441

Query: 146 ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
            L + S          L  LQEL ++ N L+ +LP   +    L ++ +S NQL  S+  
Sbjct: 442 NLDSFSLF--------LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPD 490

Query: 206 SPLVHLTSIEMLILSDNHFQ 225
                LTS++ + L  N + 
Sbjct: 491 GIFDRLTSLQKIWLHTNPWD 510

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (359), Expect = 2e-36
 Identities = 96/544 (17%), Positives = 177/544 (32%), Gaps = 85/544 (15%)

Query: 32  SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
            L +  ++ +      I                L     +++   S   L   +  L   
Sbjct: 2   PLGSATITQDT----PINQIFTDTALAEKMKTVL--GKTNVTDTVSQTDL-DQVTTLQAD 54

Query: 92  YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNS 151
              +          S   +E+L                      +L  ++ S + L   +
Sbjct: 55  RLGIK---------SIDGVEYL---------------------NNLTQINFSNNQLTDIT 84

Query: 152 SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHL 211
                  L +L  L ++ M +N +    P  LAN+T+L  L +  NQ+T      PL +L
Sbjct: 85  P------LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNL 133

Query: 212 TSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAE-ITQSHSLTAPNFQLNRLL 270
           T++  L LS N       +  L   + L+     N   + + +    +L   +   N++ 
Sbjct: 134 TNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV- 189

Query: 271 LSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPF 330
                         L    +LE +  ++ +++   P   L     L+ L L  + +    
Sbjct: 190 ---------SDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI- 236

Query: 331 RLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ 390
              +     L  LD++NN      P+     L  L    +  N +    P     +  L 
Sbjct: 237 -GTLASLTNLTDLDLANNQISNLAPLSG---LTKLTELKLGANQISNISP--LAGLTALT 290

Query: 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVG 450
            L+L+ N L    P        NL  L L  NN+     S   +LT L+ L    N+   
Sbjct: 291 NLELNENQLEDISP---ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKV-- 343

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL 510
               SL+  +++  L   +N +S   P  L NLTR+  + + +                +
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK---ANV 398

Query: 511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
            I +   N     + P+T S+       D+++N  +                       S
Sbjct: 399 SIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFS 457

Query: 571 GEIP 574
           G + 
Sbjct: 458 GTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  126 bits (319), Expect = 3e-31
 Identities = 98/548 (17%), Positives = 179/548 (32%), Gaps = 108/548 (19%)

Query: 3   GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEY 62
            L +     L    + D      S      + TL         I       +    NL  
Sbjct: 22  ALAEKMKTVLGKTNVTD----TVSQTDLDQVTTLQADRLGIKSI-----DGVEYLNNLTQ 72

Query: 63  LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL 122
           +    S+  ++ +  + +L   L ++ ++  ++  +       +  +L  L +    I  
Sbjct: 73  INF--SNNQLTDITPLKNL-TKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITD 126

Query: 123 NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWC 182
                    +++ +L  L LS + +   S+      L  L  LQ+L    N +    P  
Sbjct: 127 IDPL-----KNLTNLNRLELSSNTISDISA------LSGLTSLQQLSF-GNQVTDLKP-- 172

Query: 183 LANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242
           LAN+T+L  LD+S N+++     S L  LT++E LI ++N       + PL   + L   
Sbjct: 173 LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQIS---DITPLGILTNLDEL 226

Query: 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMN 302
             + N+L                                   L    +L  +DL++ +++
Sbjct: 227 SLNGNQLKD------------------------------IGTLASLTNLTDLDLANNQIS 256

Query: 303 GEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDIL 362
              P   L    KL  L L  + I      P+     L  L+++ N  +           
Sbjct: 257 NLAP---LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED---------- 301

Query: 363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN 422
                             S   N+K L  L L  N+++   P  ++     L  L   NN
Sbjct: 302 -----------------ISPISNLKNLTYLTLYFNNISDISP--VS-SLTKLQRLFFYNN 341

Query: 423 NLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 482
            +     S   NLTN+ WL    N+     P  L+  + +  L LN+ + +     +  N
Sbjct: 342 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 483 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY 542
           ++    +      L  P              DI+ N  S            Q  ++    
Sbjct: 398 VSIPNTVKNVTGALIAPA--TISDGGSYTEPDITWNLPSY--TNEVSYTFSQPVTIGKGT 453

Query: 543 NKLNGKMP 550
              +G + 
Sbjct: 454 TTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (276), Expect = 1e-25
 Identities = 79/456 (17%), Positives = 159/456 (34%), Gaps = 57/456 (12%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
             L  L     S   + D    +  + +   L  + ++ N   DI       L N TNL 
Sbjct: 65  EYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIADI-----TPLANLTNLT 115

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            LTL  +   I+ +  + +L  +L  L +S   ++ +          SL+ L        
Sbjct: 116 GLTLFNN--QITDIDPLKNL-TNLNRLELSSNTISDI---SALSGLTSLQQLS------- 162

Query: 122 LNTSFLQIIG-ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLP 180
                  +    ++ +L+ L +S      N    +   L  L +L+ L   +N +    P
Sbjct: 163 FGNQVTDLKPLANLTTLERLDISS-----NKVSDIS-VLAKLTNLESLIATNNQISDITP 216

Query: 181 WCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLK 240
             L  +T+L  L ++ NQL        L  LT++  L L++N      +L PL   ++L 
Sbjct: 217 --LGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLT 268

Query: 241 IFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIK 300
                 N+++  I+    LT     L  L L+ +          + +  +L ++ L    
Sbjct: 269 ELKLGANQIS-NISPLAGLT----ALTNLELNEN---QLEDISPISNLKNLTYLTLYFNN 320

Query: 301 MNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD 360
           ++   P   + +  KL+ LF  N+ +       +     + +L   +N      P+    
Sbjct: 321 ISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLAN-- 373

Query: 361 ILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS 420
            L  +    ++  A   +  +   N+     +      L    P  ++    +     ++
Sbjct: 374 -LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATIS-DGGSYTEPDIT 429

Query: 421 NNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSL 456
            N         ++  +    +      F G + Q L
Sbjct: 430 WNLPSYTN-EVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 1e-31
 Identities = 75/365 (20%), Positives = 127/365 (34%), Gaps = 38/365 (10%)

Query: 159 LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLI 218
              L       +    +   +      + S+  L V+  ++    S   + +LT++E L 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA---SIQGIEYLTNLEYLN 72

Query: 219 LSDNHFQIPISLEPLFNHSRLKIFYADNNELN--AEITQSHSLTAPNFQLNRLLLSSSYG 276
           L+ N       + PL N  +L   Y   N++   + +    +L       + +   S   
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-- 127

Query: 277 DGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHP 336
                   L +   +  ++L       +     L N   L  L +    +      PI  
Sbjct: 128 --------LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--PIAN 175

Query: 337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSN 396
              L  L ++ N  +   P+     L SL  F    N +    P    NM  L  L + N
Sbjct: 176 LTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230

Query: 397 NHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSL 456
           N +T   P  LA     L  L +  N +     +   +LT LK L +  N+        L
Sbjct: 231 NKITDLSP--LA-NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVL 283

Query: 457 SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 516
           +  S L  L+LNNN L  +    +G LT L  + +  NH+    P     L  +   D +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341

Query: 517 DNNIS 521
           +  I 
Sbjct: 342 NQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 5e-31
 Identities = 75/388 (19%), Positives = 146/388 (37%), Gaps = 62/388 (15%)

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
            +L  L    NQ+       P   L      +L        ++ E L     +       
Sbjct: 3   ATLATLPAPINQI------FPDADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAG 53

Query: 247 NELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306
            ++ +                               + + +  +LE+++L+  ++    P
Sbjct: 54  EKVAS------------------------------IQGIEYLTNLEYLNLNGNQITDISP 83

Query: 307 TWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLF 366
              L N  KL  L++  + I       +     LR L ++ +N      +     L  ++
Sbjct: 84  ---LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD---ISPLANLTKMY 135

Query: 367 SFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG 426
           S N+  N    S  S   NM  L  L ++ + +    P  +A    +L SL+L+ N ++ 
Sbjct: 136 SLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IA-NLTDLYSLSLNYNQIED 191

Query: 427 HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL 486
              S   +LT+L +     N+     P  ++  + L  L + NN ++   P  L NL++L
Sbjct: 192 --ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245

Query: 487 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
            ++ +  N +          L  L++L++  N IS     S  +NL Q+ SL L+ N+L 
Sbjct: 246 TWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLG 300

Query: 547 GKMPHQLVELKTLEVFSVAYNNLSGEIP 574
            +    +  L  L    ++ N+++   P
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (285), Expect = 1e-27
 Identities = 73/393 (18%), Positives = 150/393 (38%), Gaps = 48/393 (12%)

Query: 33  LNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISY 92
             TL         I         +        L      ++ + +   L  S+  L ++ 
Sbjct: 2   AATLATLPAPINQIF-----PDADLAEGIRAVL--QKASVTDVVTQEEL-ESITKLVVAG 53

Query: 93  CEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSS 152
            +V  +   QG     +LE+L+++   I   +        ++  L  L +       N  
Sbjct: 54  EKVASI---QGIEYLTNLEYLNLNGNQITDISPL-----SNLVKLTNLYIGT-----NKI 100

Query: 153 RILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLT 212
             +   L +L +L+EL + ++++    P  LAN+T +  L++  N     +  SPL ++T
Sbjct: 101 TDIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL--SPLSNMT 155

Query: 213 SIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLS 272
            +  L ++++  +    + P+ N + L     + N++  +I+   SLT     L+     
Sbjct: 156 GLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQIE-DISPLASLT----SLHYFTAY 207

Query: 273 SSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRL 332
            +          + +   L  + + + K+    P   L N ++L  L +  + I      
Sbjct: 208 VNQITDIT---PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN-- 259

Query: 333 PIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQIL 392
            +    +L+ L+V +N         + + L  L S  ++ N L        G +  L  L
Sbjct: 260 AVKDLTKLKMLNVGSNQISD--ISVLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 393 DLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ 425
            LS NH+T   P  LA     ++S   +N  ++
Sbjct: 317 FLSQNHITDIRP--LA-SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.4 bits (189), Expect = 4e-15
 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 13/162 (8%)

Query: 414 LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473
             +LA     +       + +L      +L+       +     +  S+  L +    ++
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK 533
             I   +  LT L+Y+ +  N +    P     L  L  L I  N I+     S   NL 
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT---DISALQNLT 110

Query: 534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
            +  L L+ + ++   P  L  L  +   ++  N+   ++  
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (310), Expect = 4e-30
 Identities = 68/406 (16%), Positives = 139/406 (34%), Gaps = 32/406 (7%)

Query: 161 SLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILS 220
           +    +  ++ D+ L+ +L     +  +++ LD+S N L+  IS++ L   T +E+L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 221 DNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRL-LLSSSYGDGF 279
            N          L + S L+    +NN +  E+    S+   +   N +  +S S G G 
Sbjct: 67  SNVLY---ETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQG- 121

Query: 280 IFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGG-PFRLPIHPHR 338
                       + + L++ K+            ++++ L L  + I    F        
Sbjct: 122 -----------KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH 398
            L  L++  N       V+   +   L + ++S+N L   +   F +   +  + L NN 
Sbjct: 170 TLEHLNLQYNFIYD---VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 399 LTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK 458
           L   I + L     NL    L  N        R+F   N +   +          Q+  +
Sbjct: 226 LV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG----PIPVEFCQLDLLQILD 514
           C+     +            +   L  L+         +G     +  E       + +D
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLE 560
                    +I       +   +L+     L+ ++ +       L+
Sbjct: 343 ALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  102 bits (256), Expect = 3e-23
 Identities = 59/402 (14%), Positives = 125/402 (31%), Gaps = 62/402 (15%)

Query: 178 SLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ--IPISLEPLFN 235
           ++     N    +I  V+ + L     +S      +++ L LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 236 HSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVD 295
            ++L++    +N L  E     SL+                              L  +D
Sbjct: 58  -TKLELLNLSSNVLY-ETLDLESLST-----------------------------LRTLD 86

Query: 296 LSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMP 355
           L++  +        L     +ETL   N++I    R+     +  + + ++NN       
Sbjct: 87  LNNNYVQE------LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRD 137

Query: 356 VEIGDILPSLFSFNISTNALHG-SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNL 414
           ++ G     +   ++  N +   +      +   L+ L+L  N +  ++     V    L
Sbjct: 138 LDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVFAKL 193

Query: 415 NSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473
            +L LS+N L        F +   + W+ L  N+ V  I ++L    +LE   L  N   
Sbjct: 194 KTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 474 -GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNL 532
            G +  +     R+Q +      ++        +  +  +           L       L
Sbjct: 251 CGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRL 307

Query: 533 KQIESLDLSYNKLNG----KMPHQLVELKTLEVFSVAYNNLS 570
             ++  + +     G    ++  +                  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  102 bits (256), Expect = 4e-23
 Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 14/219 (6%)

Query: 357 EIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS 416
           EI           ++ ++L  ++ S   +   ++ LDLS N L+      LA     L  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 417 LALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 476
           L LS+N L         +L+ L+ L L  N       Q L    S+E L+  NN++S   
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115

Query: 477 PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIE 536
                    +    + NN +     ++      +Q LD+  N I         ++   +E
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 537 SLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
            L+L YN +        V    L+   ++ N L+  +  
Sbjct: 173 HLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGP 208

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 5e-20
 Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 14/201 (6%)

Query: 378 SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTN 437
           +I     N    +I  ++++ L  +    L     N+  L LS N L     +     T 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497
           L+ L L  N         L   S+L  L LNNN +       L     ++ +   NN++ 
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS 112

Query: 498 GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE-L 556
             +     Q    + + +++N I+  L         +++ LDL  N+++     +L    
Sbjct: 113 R-VSCSRGQ--GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 557 KTLEVFSVAYNNLSGEIPEWT 577
            TLE  ++ YN +  ++    
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV 188

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 65/537 (12%), Positives = 157/537 (29%), Gaps = 72/537 (13%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSI 90
                  ++ ++             +  N++ L L  + L       +A     L+ L++
Sbjct: 10  NRYKIEKVTDSSLKQA---LASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNL 65

Query: 91  SYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTN 150
           S   +          S  +L  L ++      N  ++Q +    PS++ L  +      N
Sbjct: 66  SSNVLYET---LDLESLSTLRTLDLNN-----N--YVQELLV-GPSIETLHAAN-----N 109

Query: 151 SSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVH 210
           +   +          + + +A+N +           + ++ LD+  N++     +     
Sbjct: 110 NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 211 LTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELN---AEITQSHSLTAPNFQLN 267
             ++E L L  N       ++     ++LK     +N+L     E   +  +T  + + N
Sbjct: 168 SDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

Query: 268 RLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG 327
           +L+         +  K L    +LE  DL     +          N +++T+     ++ 
Sbjct: 225 KLV---------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVK 273

Query: 328 GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS----IPSSF 383
                                  +  +P    D L +L     +  +  GS    +    
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 384 GNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLL 443
            N    + +D                              +   +            L  
Sbjct: 333 ENQARQREIDALKEQYR----------------------TVIDQVTL---RKQAKITLEQ 367

Query: 444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIM-PNNHLEGPIPV 502
           +      ++       + L+G          ++       + LQ +      + E  +  
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

Query: 503 EFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL 559
           +  Q + ++  D+  +  + +L        K     DL+    N  +   +V  + L
Sbjct: 427 QSVQNNAIRDWDMYQHKET-QLAEENARLKKLNGEADLALASANATLQELVVREQNL 482

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (300), Expect = 3e-29
 Identities = 77/392 (19%), Positives = 143/392 (36%), Gaps = 52/392 (13%)

Query: 155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSI 214
           +D  L       ++ +          +    + + +I+    + +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 215 EMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSS 274
           E+L L+D   +  I          ++  Y   N +                         
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY----------------------- 107

Query: 275 YGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPI 334
                + P    +   L  + L    ++   P  +  N  KL TL + N+++        
Sbjct: 108 -----LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 335 HPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394
                L+ L +S+N    H+ +    ++PSLF  N+S N L     S+      ++ LD 
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ 454
           S+N +   +   +    V L  L L +NNL     +   N   L  + L  N     +  
Sbjct: 213 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 455 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514
              K   LE LY++NN L   +  +   +  L+ + + +NHL   +     Q D L+ L 
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 324

Query: 515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
           +  N+I   L  ST   LK   +L LS+N  +
Sbjct: 325 LDHNSIV-TLKLSTHHTLK---NLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (281), Expect = 7e-27
 Identities = 65/395 (16%), Positives = 132/395 (33%), Gaps = 60/395 (15%)

Query: 104 FPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLV 163
                    +H+      +   F  I   ++ + K ++   S +     ++    L S  
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDI---TLNNQKIVTFKNSTM----RKLPAALLDSFR 69

Query: 164 HLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH 223
            ++ L + D  +     +  A   +++ L + FN +   +      ++  + +L+L  N 
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128

Query: 224 FQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPK 283
               +      N  +L      NN L                              I   
Sbjct: 129 LSS-LPRGIFHNTPKLTTLSMSNNNLER----------------------------IEDD 159

Query: 284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL 343
                  L+ + LS  ++       L+ +   L    +  + +       +     +  L
Sbjct: 160 TFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLST-----LAIPIAVEEL 210

Query: 344 DVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEI 403
           D S+N+    +    G +   L    +  N L  +  +   N   L  +DLS N L  +I
Sbjct: 211 DASHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KI 263

Query: 404 PEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKCSSL 462
             +  V    L  L +SNN L     +     +  LK L L  N  +  + ++  +   L
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320

Query: 463 EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497
           E LYL++NS+   +   L     L+ + + +N  +
Sbjct: 321 ENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (258), Expect = 8e-24
 Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 19/280 (6%)

Query: 291 LEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNF 350
           +E ++L+ +++  E  T+       ++ L++  ++I             L  L +  N+ 
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 351 QGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVG 410
              +P  I    P L + ++S N L      +F     LQ L LS+N LT      +   
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-- 186

Query: 411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN 470
             +L    +S N L     S       ++ L    N     +   +     L  L L +N
Sbjct: 187 --SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 236

Query: 471 SLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFS 530
           +L+     WL N   L  + +  N LE  +   F ++  L+ L IS+N +    +     
Sbjct: 237 NLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQ 292

Query: 531 NLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
            +  ++ LDLS+N L   +     +   LE   + +N++ 
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 4e-20
 Identities = 74/414 (17%), Positives = 138/414 (33%), Gaps = 87/414 (21%)

Query: 36  LDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEV 95
            D+  +  T       +++    N + +T   S++   L  ++   F  ++ L+++  ++
Sbjct: 24  YDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 81

Query: 96  NGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRIL 155
              +    F    +++ L+M F  I         + +++P L  L L       N    L
Sbjct: 82  E-EIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER-----NDLSSL 132

Query: 156 DQGL-CSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSI 214
            +G+  +   L  L M++N+L           TSL+ L +S N+LT  +  S +  L   
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFH- 190

Query: 215 EMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSS 274
               +S N       L  L     ++   A +N +N        +  P            
Sbjct: 191 --ANVSYNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNV--------- 226

Query: 275 YGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPI 334
                          +L  + L H  +                               P 
Sbjct: 227 ---------------ELTILKLQHNNLT----------------------DTAWLLNYP- 248

Query: 335 HPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394
                L  +D+S N  +  +       +  L    IS N L  ++      +  L++LDL
Sbjct: 249 ----GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448
           S+NHL   +          L +L L +N++     S       LK L L  N +
Sbjct: 303 SHNHLL-HVERNQP-QFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 28/222 (12%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
            +   PSL   ++SYN  +         L     +E L    S   I++++    +   L
Sbjct: 181 DLSLIPSLFHANVSYNLLS--------TLAIPIAVEELDA--SHNSINVVR--GPVNVEL 228

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGS 145
             L + +   N +       ++  L  + +S+  +      +      M  L+ L +S  
Sbjct: 229 TILKLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN- 281

Query: 146 ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
               N    L+     +  L+ L ++ N L   +         L  L +  N +  ++  
Sbjct: 282 ----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL 335

Query: 206 SPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNN 247
           S    L +   L LS N +          N +R  +  AD +
Sbjct: 336 STHHTLKN---LTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.2 bits (162), Expect = 9e-12
 Identities = 72/445 (16%), Positives = 129/445 (28%), Gaps = 119/445 (26%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
           L   K        +R        + SF  +  L+L+     +I             ++ L
Sbjct: 44  LNNQKIVTFKNSTMRKLPA--ALLDSFRQVELLNLNDLQIEEIDTYA---FAYAHTIQKL 98

Query: 64  TLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALN 123
            +      I  L     +F ++                                      
Sbjct: 99  YM--GFNAIRYLP--PHVFQNVPL------------------------------------ 118

Query: 124 TSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGL-CSLVHLQELRMADNDLRGSLPWC 182
                        L  L L       N    L +G+  +   L  L M++N+L       
Sbjct: 119 -------------LTVLVLER-----NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 183 LANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242
               TSL+ L +S N+LT  +  S +  L       +S N       L  L     ++  
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDLSLIPSLFH---ANVSYNL------LSTLAIPIAVEEL 210

Query: 243 YADNNELNAEITQSHSLTAPNFQ-LNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKM 301
            A +N +N        +  P    L  L L     +      +L +   L  VDLS+ ++
Sbjct: 211 DASHNSIN-------VVRGPVNVELTILKLQ---HNNLTDTAWLLNYPGLVEVDLSYNEL 260

Query: 302 NGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI 361
             +          +LE L++ N+ +     L   P   L+ LD+S+N+            
Sbjct: 261 E-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL---------- 308

Query: 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN 421
                            +  +      L+ L L +N +   +          L +L LS+
Sbjct: 309 ----------------HVERNQPQFDRLENLYLDHNSIV-TLKLST---HHTLKNLTLSH 348

Query: 422 NNLQGHMFSRNFNLTNLKWLLLEGN 446
           N+      S      N+    ++  
Sbjct: 349 NDWDC--NSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 452 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 511
           I  +L        ++++  +           L   + +   N+ +             ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 512 ILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
           +L+++D  I   +    F+    I+ L + +N +    PH    +  L V  +  N+LS
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 23/174 (13%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
               +L    L    + D       + ++P L  +DLSYN    I             LE
Sbjct: 223 PVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLE 275

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            L +  +   +  L       P+LK L +S+  +  V R    P F  LE+L++      
Sbjct: 276 RLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLD----- 326

Query: 122 LNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDL 175
            + S + +   +  +LK L+LS +    NS R L        ++    + D D 
Sbjct: 327 -HNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRAL------FRNVARPAVDDADQ 373

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (290), Expect = 2e-28
 Identities = 43/266 (16%), Positives = 85/266 (31%), Gaps = 19/266 (7%)

Query: 321 LINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI-LPSLFSFNISTNALHGSI 379
             N             +     ++             + D   P   +  + +  L    
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96

Query: 380 PSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNL 438
           P     +  LQ + +    L  E+P+ +      L +L L+ N L+      +  +L  L
Sbjct: 97  PDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLRA--LPASIASLNRL 152

Query: 439 KWLLLEGNRFVGEIPQSLSKCS---------SLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489
           + L +     + E+P+ L+            +L+ L L    +   +P  + NL  L+ +
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 490 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM 549
            + N+ L   +      L  L+ LD+          P  F     ++ L L        +
Sbjct: 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTL 269

Query: 550 PHQLVELKTLEVFSVAYNNLSGEIPE 575
           P  +  L  LE   +        +P 
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (286), Expect = 7e-28
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNN 397
             L+ + +        +P  +      L +  ++ N L  ++P+S  ++  L+ L +   
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

Query: 398 HLTGEIPEYLA--------VGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRF 448
               E+PE LA         G VNL SL L    ++      +  NL NLK L +  +  
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPL 218

Query: 449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQL 507
              +  ++     LE L L   +     P   G    L+ +I+ + ++L   +P++  +L
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRL 276

Query: 508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVEL 556
             L+ LD+       RL PS  + L     + +  +       H+ V  
Sbjct: 277 TQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.2 bits (209), Expect = 9e-18
 Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 22/210 (10%)

Query: 377 GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLT 436
           GS      +    + L    +       + L+           ++ N   H   R  N  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRW-HSAWRQANSN 56

Query: 437 NLKWLLLEGNRFVGEIPQSLSKCSS--LEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN 494
           N +     G          L   +      L L +  L  + P     L+ LQ++ +   
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY-NKL-------- 545
            L   +P    Q   L+ L ++ N +    +P++ ++L ++  L +    +L        
Sbjct: 115 GLME-LPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLA 171

Query: 546 NGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
           +     +   L  L+   + +  +   +P 
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPA 200

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 47/371 (12%), Positives = 102/371 (27%), Gaps = 71/371 (19%)

Query: 52  QELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLE 111
              H+ +  E L    S+        ++       N   +                 +  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQW-QRHYNADRNRWH--------SAWRQANSN 56

Query: 112 HLHMSFAPIALNTSFLQIIGE-SMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRM 170
           +  +         +   ++ + + P    L L    L              L HLQ + +
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTI 111

Query: 171 ADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDN-------- 222
               L   LP  +     L  L ++ N L  ++ +S +  L  +  L +           
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRACPELTELPE 168

Query: 223 ---HFQIPISLEPLFNHSRLKIFYADNNELN---AEITQSHSLTAPNFQLNRLLLSSSYG 276
                      + L N   L+    +   +    A I    +L +   + + L       
Sbjct: 169 PLASTDASGEHQGLVN---LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS------ 219

Query: 277 DGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHP 336
                   ++H   LE +DL        +P                    G         
Sbjct: 220 ---ALGPAIHHLPKLEELDLRGCTALRNYP-----------------PIFG---GR---- 252

Query: 337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSN 396
              L+ L + + +    +P++I   L  L   ++        +PS    +    I+ +  
Sbjct: 253 -APLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 397 NHLTGEIPEYL 407
           + L  ++ ++ 
Sbjct: 311 H-LQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 46/258 (17%), Positives = 81/258 (31%), Gaps = 34/258 (13%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
                +  L  V +    +          L  + +      ++       +  F  LE L
Sbjct: 80  QPGRVALELRSVPL---PQFPDQAFRLSHLQHMTIDAAGLMEL----PDTMQQFAGLETL 132

Query: 64  TLDESSLHISLLQSIASLFPSLKNLSISYC--------EVNGVLRGQGFPSFKSLEHLHM 115
           TL  + L  +L  SIASL   L+ LSI  C         +             +L+ L +
Sbjct: 133 TLARNPLR-ALPASIASL-NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 116 SFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDL 175
            +  I    S    I   + +LK L +       +    L   +  L  L+EL +     
Sbjct: 191 EWTGI---RSLPASIAN-LQNLKSLKIRN-----SPLSALGPAIHHLPKLEELDLRGCTA 241

Query: 176 RGSLPWCLANMTSLRILDVS-FNQLTGSISSSPLVHLTSIEMLILSDNHF--QIPISLEP 232
             + P        L+ L +   + L  ++    +  LT +E L L       ++P  +  
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLL-TLPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 233 LFNHSRLKIFYADNNELN 250
           L       I     +   
Sbjct: 300 L---PANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 39/257 (15%), Positives = 93/257 (36%), Gaps = 37/257 (14%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
               +    +G  ++  + LL+   + P    L+L              +    ++L+++
Sbjct: 55  SNNPQIETRTGRALKATADLLED-ATQPGRVALELRSVPLPQF----PDQAFRLSHLQHM 109

Query: 64  TLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPS----FKSLEHLHMSFA- 118
           T+D + L   L  ++      L+ L+++   +      +  P+       L  L +    
Sbjct: 110 TIDAAGLM-ELPDTMQQF-AGLETLTLARNPL------RALPASIASLNRLRELSIRACP 161

Query: 119 -----PIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADN 173
                P  L ++      + + +L+ L L          R L   + +L +L+ L++ ++
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEW-----TGIRSLPASIANLQNLKSLKIRNS 216

Query: 174 DLRGSLPWCLANMTSLRILDVS-FNQLTGSISSSPLVHLTSIEMLILSD-NHFQ-IPISL 230
            L  +L   + ++  L  LD+     L  +           ++ LIL D ++   +P+ +
Sbjct: 217 PLS-ALGPAIHHLPKLEELDLRGCTALR-NYPPI-FGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 231 EPLFNHSRLKIFYADNN 247
             L     L+       
Sbjct: 274 HRLTQ---LEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 26/208 (12%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNN-FTDI-----AITTTQELH 55
                L++  L+   +R    L  S+ S   L  L +      T++     +   + E  
Sbjct: 124 QQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 56  NFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHM 115
              NL+ L L+ + +  SL  SIA+L  +LK+L I    ++ +           LE L +
Sbjct: 181 GLVNLQSLRLEWTGI-RSLPASIANL-QNLKSLKIRNSPLSALG--PAIHHLPKLEELDL 236

Query: 116 SFAPIALNTSFLQIIGES---MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMAD 172
                    + L+           LK L L       ++   L   +  L  L++L +  
Sbjct: 237 R------GCTALRNYPPIFGGRAPLKRLILKDC----SNLLTLPLDIHRLTQLEKLDLRG 286

Query: 173 NDLRGSLPWCLANMTSLRILDVSFNQLT 200
                 LP  +A + +  I+ V  +   
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 20/148 (13%), Positives = 38/148 (25%), Gaps = 25/148 (16%)

Query: 449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP------- 501
           +G         S  E LY   ++        L    R         H             
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 502 --------------VEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547
                         +E         L++    +     P     L  ++ + +    L  
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM- 117

Query: 548 KMPHQLVELKTLEVFSVAYNNLSGEIPE 575
           ++P  + +   LE  ++A N L   +P 
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPA 144

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (292), Expect = 2e-27
 Identities = 77/392 (19%), Positives = 143/392 (36%), Gaps = 52/392 (13%)

Query: 155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSI 214
           +D  L       ++ +          +    + + +I+    + +   + ++ L     +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 215 EMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSS 274
           E+L L+D   +  I          ++  Y   N +                         
Sbjct: 78  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY----------------------- 113

Query: 275 YGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPI 334
                + P    +   L  + L    ++   P  +  N  KL TL + N+++        
Sbjct: 114 -----LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 335 HPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394
                L+ L +S+N    H+ +    ++PSLF  N+S N L     S+      ++ LD 
Sbjct: 168 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 218

Query: 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ 454
           S+N +   +   +    V L  L L +NNL     +   N   L  + L  N     +  
Sbjct: 219 SHNSIN-VVRGPV---NVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYH 272

Query: 455 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514
              K   LE LY++NN L   +  +   +  L+ + + +NHL   +     Q D L+ L 
Sbjct: 273 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 330

Query: 515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
           +  N+I   L  ST   LK   +L LS+N  +
Sbjct: 331 LDHNSIV-TLKLSTHHTLK---NLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (280), Expect = 6e-26
 Identities = 65/390 (16%), Positives = 132/390 (33%), Gaps = 60/390 (15%)

Query: 109 SLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQEL 168
               +H+      +   F  I   ++ + K ++   S +     ++    L S   ++ L
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDI---TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELL 80

Query: 169 RMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPI 228
            + D  +     +  A   +++ L + FN +   +      ++  + +L+L  N     +
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-L 138

Query: 229 SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQ 288
                 N  +L      NN L                              I        
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLER----------------------------IEDDTFQAT 170

Query: 289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN 348
             L+ + LS  ++       L+ +   L    +  + +       +     +  LD S+N
Sbjct: 171 TSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLST-----LAIPIAVEELDASHN 221

Query: 349 NFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA 408
           +    +    G +   L    +  N L  +  +   N   L  +DLS N L  +I  +  
Sbjct: 222 SIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPF 274

Query: 409 VGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYL 467
           V    L  L +SNN L     +     +  LK L L  N  +  + ++  +   LE LYL
Sbjct: 275 VKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 468 NNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497
           ++NS+   +   L     L+ + + +N  +
Sbjct: 332 DHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (269), Expect = 1e-24
 Identities = 62/325 (19%), Positives = 122/325 (37%), Gaps = 36/325 (11%)

Query: 266 LNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDS 325
              + +     D +   + +   +  + V   +  M  + P  LL++  ++E L L +  
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 86

Query: 326 IGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGN 385
           I             ++ L +  N  + ++P  +   +P L    +  N L       F N
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 386 MKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG 445
              L  L +SNN+L   I +       +L +L LS+N L     S    + +L    +  
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSY 201

Query: 446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR--------------------WLGNLTR 485
           N        +L+   ++E L  ++NS++  +                      WL N   
Sbjct: 202 NLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTAWLLNYPG 255

Query: 486 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545
           L  + +  N LE  +   F ++  L+ L IS+N +    +      +  ++ LDLS+N L
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHL 313

Query: 546 NGKMPHQLVELKTLEVFSVAYNNLS 570
              +     +   LE   + +N++ 
Sbjct: 314 L-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 91.9 bits (228), Expect = 1e-19
 Identities = 88/544 (16%), Positives = 173/544 (31%), Gaps = 109/544 (20%)

Query: 33  LNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISY 92
               D+  +  T       +++    N + +T   S++   L  ++   F  ++ L+++ 
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 84

Query: 93  CEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSS 152
            ++   +    F    +++ L+M F  I         + +++P L  L L       N  
Sbjct: 85  LQIE-EIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER-----NDL 135

Query: 153 RILDQGL-CSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHL 211
             L +G+  +   L  L M++N+L           TSL+ L +S N+LT       L  +
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLI 191

Query: 212 TSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLL 271
            S+    +S N       L  L     ++   A +N +N        +  P         
Sbjct: 192 PSLFHANVSYNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNV------ 232

Query: 272 SSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFR 331
                             +L  + L H  +                              
Sbjct: 233 ------------------ELTILKLQHNNLT----------------------DTAWLLN 252

Query: 332 LPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQI 391
            P      L  +D+S N  +  +       +  L    IS N L  ++      +  L++
Sbjct: 253 YP-----GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 392 LDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF--- 448
           LDLS+NHL   +          L +L L +N++     S       LK L L  N +   
Sbjct: 306 LDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHNDWDCN 360

Query: 449 -------------VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495
                        V +  Q       LE       S    + R L  +  L  ++     
Sbjct: 361 SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI-ALTSVVEKVQR 419

Query: 496 LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE 555
            +G         D +  +    + I+ +         +Q+E+          ++ ++ ++
Sbjct: 420 AQGRCS----ATDTINSVQSLSHYIT-QQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 556 LKTL 559
            + L
Sbjct: 475 QEQL 478

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 28/222 (12%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
            +   PSL   ++SYN  +         L     +E L    S   I++++    +   L
Sbjct: 187 DLSLIPSLFHANVSYNLLS--------TLAIPIAVEELDA--SHNSINVVR--GPVNVEL 234

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGS 145
             L + +   N +       ++  L  + +S+  +      +      M  L+ L +S  
Sbjct: 235 TILKLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN- 287

Query: 146 ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
               N    L+     +  L+ L ++ N L   +         L  L +  N +  ++  
Sbjct: 288 ----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL 341

Query: 206 SPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNN 247
           S    L +   L LS N +          N +R  +  AD +
Sbjct: 342 STHHTLKN---LTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.0 bits (171), Expect = 1e-12
 Identities = 95/562 (16%), Positives = 177/562 (31%), Gaps = 71/562 (12%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
           L   K        +R        + SF  +  L+L+     +I             ++ L
Sbjct: 50  LNNQKIVTFKNSTMRKLPA--ALLDSFRQVELLNLNDLQIEEIDTYA---FAYAHTIQKL 104

Query: 64  TLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALN 123
            +  +++   L   +    P L  L +   +++  L    F +   L  L MS   +   
Sbjct: 105 YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL--- 159

Query: 124 TSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL 183
                   ++  SL+ L LS      N    +D  L  +  L    ++ N L       L
Sbjct: 160 ERIEDDTFQATTSLQNLQLSS-----NRLTHVDLSL--IPSLFHANVSYNLLST-----L 207

Query: 184 ANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
           A   ++  LD S N +   +     V LT    L L  N+         L N+  L    
Sbjct: 208 AIPIAVEELDASHNSIN-VVRGPVNVELTI---LKLQHNNL---TDTAWLLNYPGLVEVD 260

Query: 244 ADNNELNAEITQSHSLTAPNF----QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHI 299
              NEL         +    F    +L RL +S++         +      L+ +DLSH 
Sbjct: 261 LSYNEL-------EKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHN 311

Query: 300 KMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIG 359
            +         + + +LE L+L ++SI     L +  H  L+ L +S+N++       + 
Sbjct: 312 HLL-HVERNQPQFD-RLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD---CNSLR 363

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNM------------KFLQILDLSNNHLTGEIPEYL 407
            +  ++    +     H  I     +             + LQ + L++     E  +  
Sbjct: 364 ALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV---EKVQRA 420

Query: 408 AVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ----SLSKCSSLE 463
              C   +++    +            L   + L  E N    E+ Q     + +   L+
Sbjct: 421 QGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQ 480

Query: 464 GLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 523
           GL+   ++   +       L R       N         +  +L   Q      +     
Sbjct: 481 GLHAEIDTNLRRYRLPKDGLARSS--DNLNKVFTHLKERQAFKLRETQARRTEADAKQKE 538

Query: 524 LIPSTFSNLKQIESLDLSYNKL 545
                  N+   + LD    K 
Sbjct: 539 TEDLEQENIALEKQLDNKRAKQ 560

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL 510
            I  +L        ++++  +           L   + +   N+ +             +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
           ++L+++D  I   +    F+    I+ L + +N +    PH    +  L V  +  N+LS
Sbjct: 78  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 55/279 (19%), Positives = 93/279 (33%), Gaps = 34/279 (12%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
               +L    L    + D       + ++P L  +DLSYN    I             LE
Sbjct: 229 PVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLE 281

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            L +  +   +  L       P+LK L +S+  +  V R    P F  LE+L++    I 
Sbjct: 282 RLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIV 337

Query: 122 LNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW 181
                  +   +  +LK L+LS +    NS R L        ++    + D D    + +
Sbjct: 338 ------TLKLSTHHTLKNLTLSHNDWDCNSLRAL------FRNVARPAVDDADQHCKIDY 385

Query: 182 -------CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQI-PISLEPL 233
                  C  +        + +  LT  +               ++        I+ +  
Sbjct: 386 QLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGG 445

Query: 234 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLS 272
                 +   A+ NEL AE+ Q   LT    Q  +LL  
Sbjct: 446 VPLQGNEQLEAEVNELRAEVQQ---LTNEQIQQEQLLQG 481

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (289), Expect = 2e-27
 Identities = 58/301 (19%), Positives = 109/301 (36%), Gaps = 24/301 (7%)

Query: 280 IFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPH-- 337
           +          LE ++L+   +          N   L TL L ++ +       I     
Sbjct: 47  LNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKL-----IPLGVF 100

Query: 338 ---RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMKFLQILD 393
                L  LD+S N     +   +   L +L S  +  N L   I   +F  +  L+ L 
Sbjct: 101 TGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLT 158

Query: 394 LSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVG 450
           L   +LT  IP         L  L L + N+     + F     L  LK L +    ++ 
Sbjct: 159 LEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFK---RLYRLKVLEISHWPYLD 214

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVEFCQLDL 509
            +  +     +L  L + + +L+  +P   + +L  L+++ +  N +         +L  
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 510 LQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569
           LQ + +    ++  + P  F  L  +  L++S N+L          +  LE   +  N L
Sbjct: 274 LQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

Query: 570 S 570
           +
Sbjct: 333 A 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (278), Expect = 6e-26
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 11/222 (4%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
            I       ++  N +       F +   L+ L+L+ N ++  +         NL +L L
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87

Query: 420 SNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 476
            +N L+     +F+    L+NL  L +  N+ V  +        +L+ L + +N L    
Sbjct: 88  RSNRLKLIPLGVFT---GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144

Query: 477 PRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQI 535
            R    L  L+ + +   +L   IP E    L  L +L +   NI+  +   +F  L ++
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRL 202

Query: 536 ESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWT 577
           + L++S+      M    +    L   S+ + NL+  +P   
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.4 bits (248), Expect = 3e-22
 Identities = 68/345 (19%), Positives = 126/345 (36%), Gaps = 49/345 (14%)

Query: 135 PSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV 194
              + L L  + +      +      S  HL+EL + +N +    P    N+ +LR L +
Sbjct: 32  TETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 195 SFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEP-LFNH-SRLKIFYADNNELNAE 252
             N+L   I       L+++  L +S+N       L   +F     LK     +N+L   
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDLV-- 141

Query: 253 ITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLEN 312
                                     +I  +     + LE + L    +    PT  L +
Sbjct: 142 --------------------------YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSH 174

Query: 313 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIST 372
              L  L L + +I            RL+ L++S+  +   M         +L S +I+ 
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITH 233

Query: 373 NALHGSIPS-SFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL---QGHM 428
             L  ++P  +  ++ +L+ L+LS N ++  I   +    + L  + L    L   + + 
Sbjct: 234 CNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 429 FSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473
           F     L  L+ L + GN+             +LE L L++N L+
Sbjct: 292 FR---GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 70/399 (17%), Positives = 127/399 (31%), Gaps = 99/399 (24%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
                 LDL  N    +      E  +F +LE L L+E+   +S ++  A          
Sbjct: 31  PTETRLLDLGKNRIKTL---NQDEFASFPHLEELELNEN--IVSAVEPGA---------- 75

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPI-ALNTSFLQIIGESMPSLKYLSLSGSILG 148
                         F +  +L  L +    +  +           + +L  L +S + + 
Sbjct: 76  --------------FNNLFNLRTLGLRSNRLKLIPLGVFT----GLSNLTKLDISENKI- 116

Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPL 208
                +LD     L +L+ L + DNDL        + + SL  L +    LT SI +  L
Sbjct: 117 ---VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEAL 172

Query: 209 VHLTSIEMLILSDNHFQI--PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL 266
            HL  + +L L   +       S + L+    L+I  +    L+                
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI--SHWPYLD---------------- 214

Query: 267 NRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSI 326
                               +  +L  + ++H  +    P   + +   L  L L  + I
Sbjct: 215 -------------TMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

Query: 327 GGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 386
                             +  +             L  L    +    L    P +F  +
Sbjct: 261 S----------------TIEGSMLHE---------LLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 387 KFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ 425
            +L++L++S N LT  + E +     NL +L L +N L 
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 9e-14
 Identities = 38/228 (16%), Positives = 86/228 (37%), Gaps = 22/228 (9%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDE---SSLHISLLQSIASLF 82
              SFP L  L+L+ N  + +        +N  NL  L L       + + +   +    
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGA---FNNLFNLRTLGLRSNRLKLIPLGVFTGL---- 103

Query: 83  PSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA-LNTSFLQIIGESMPSLKYLS 141
            +L  L IS  ++  +L    F    +L+ L +    +  ++          + SL+ L+
Sbjct: 104 SNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFS----GLNSLEQLT 158

Query: 142 LSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTG 201
           L    L    + I  + L  L  L  LR+   ++     +    +  L++L++S      
Sbjct: 159 LEKCNL----TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 202 SISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
           +++ + L +  ++  L ++  +    +    + +   L+      N +
Sbjct: 215 TMTPNCL-YGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPI 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (275), Expect = 1e-26
 Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 7/215 (3%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLT-GEIPEYLAVGCVNLNSLA 418
            I  S     + +N L       F  +  L  L LS+N L+          G  +L  L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 419 LSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLSGKI 476
           LS N +     S NF  L  L+ L  + +        S+     +L  L +++       
Sbjct: 85  LSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 477 PRWLGNLTRLQYIIMP-NNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQI 535
                 L+ L+ + M  N+  E  +P  F +L  L  LD+S   +  +L P+ F++L  +
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSL 201

Query: 536 ESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
           + L++S+N            L +L+V   + N++ 
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 13/222 (5%)

Query: 280 IFPKFLYHQHDLEFVDLSHIKMN-GEFPTWLLENNAKLETLFLINDSIGGPFRLP--IHP 336
           +          L  + LS   ++     +        L+ L L  + +     +      
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLG 99

Query: 337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSN 396
             +L  LD  ++N +      +   L +L   +IS      +    F  +  L++L ++ 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 397 NHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
           N         +     NL  L LS   L+      F+   +L++L+ L +  N F     
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDT 216

Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNL-TRLQYIIMPNN 494
                 +SL+ L  + N +     + L +  + L ++ +  N
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 59/224 (26%), Positives = 87/224 (38%), Gaps = 13/224 (5%)

Query: 3   GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEY 62
            L +L    LS  G+       QS     SL  LDLS+N    +    +        LE+
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM----SSNFLGLEQLEH 105

Query: 63  LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL 122
           L    S+L      S+     +L  L IS+     V     F    SLE L M+      
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNS--F 162

Query: 123 NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWC 182
             +FL  I   + +L +L LS   L     ++      SL  LQ L M+ N+      + 
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQL----EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 183 LANMTSLRILDVSFNQLTGSISSSPLVHL-TSIEMLILSDNHFQ 225
              + SL++LD S N +  +     L H  +S+  L L+ N F 
Sbjct: 219 YKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 54/294 (18%), Positives = 89/294 (30%), Gaps = 67/294 (22%)

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISLEPLFNHSRLKIFYAD 245
           +S   L++  N+L  S+       LT +  L LS N         +  F  + LK     
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 246 NNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEF 305
            N     +    S      QL  L                    D +  +L  +     F
Sbjct: 87  FN----GVITMSSNFLGLEQLEHL--------------------DFQHSNLKQMSEFSVF 122

Query: 306 PTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365
                                           R L +LD+S+ + +      I + L SL
Sbjct: 123 -----------------------------LSLRNLIYLDISHTHTR-VAFNGIFNGLSSL 152

Query: 366 FSFNISTNALHGSIPS-SFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL 424
               ++ N+   +     F  ++ L  LDLS   L  ++         +L  L +S+NN 
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF 211

Query: 425 QG---HMFSRNFNLTNLKWLLLEGNRFVGEIPQSL--SKCSSLEGLYLNNNSLS 473
                  +     L +L+ L    N  +    +       SSL  L L  N  +
Sbjct: 212 FSLDTFPYK---CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 39/226 (17%)

Query: 28  GSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN 87
           G   S   L+L  N    +           T L  L+L  SS  +S     +       +
Sbjct: 25  GIPSSATRLELESNKLQSL---PHGVFDKLTQLTKLSL--SSNGLSFKGCCSQSDFGTTS 79

Query: 88  LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPI-ALNTSFLQIIGESMPSLKYLSLSGSI 146
           L                      ++L +SF  +  ++++F       +  L++L    S 
Sbjct: 80  L----------------------KYLDLSFNGVITMSSNF-----LGLEQLEHLDFQHSN 112

Query: 147 LGTNSSRILDQGL-CSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
           L     ++ +  +  SL +L  L ++    R +       ++SL +L ++ N    +   
Sbjct: 113 L----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 206 SPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNA 251
                L ++  L LS    +  +S     + S L++    +N   +
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFS 213

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 2e-26
 Identities = 49/290 (16%), Positives = 101/290 (34%), Gaps = 35/290 (12%)

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNN 397
            R +   V++++ +      +     ++   ++S N L     +       L++L+LS+N
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 398 HLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS 457
            L  E  +        L +L L+NN +            +++ L    N     +    S
Sbjct: 69  VLY-ETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVS--CS 117

Query: 458 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDIS 516
           +    + +YL NN ++       G  +R+QY+ +  N ++           D L+ L++ 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 517 DNNISG--------------------RLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVEL 556
            N I                        +   F +   +  + L  NKL   +   L   
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 557 KTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYEGNIFLCGLPLPICISP 605
           + LE F +  N    G + ++ ++       + +    L G     C  P
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 1e-24
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 14/219 (6%)

Query: 357 EIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS 416
           EI           ++ ++L  ++ S   +   ++ LDLS N L+ +I          L  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 417 LALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 476
           L LS+N L  +      +L+ L+ L L  N       Q L    S+E L+  NN++S ++
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 477 PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIE 536
                     + I + NN +     ++      +Q LD+  N I         ++   +E
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 537 SLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
            L+L YN +        V    L+   ++ N L+  +  
Sbjct: 173 HLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGP 208

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (252), Expect = 2e-23
 Identities = 55/290 (18%), Positives = 113/290 (38%), Gaps = 25/290 (8%)

Query: 289 HDLEFVDLSH--IKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVS 346
            +++ +DLS   +    +     L    KLE L L ++ +     L +     LR LD++
Sbjct: 34  WNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLN 88

Query: 347 NNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEY 406
           NN  Q     E+  + PS+ + + + N +   +  S    +  + + L+NN +T  + + 
Sbjct: 89  NNYVQ-----ELL-VGPSIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKIT-MLRDL 138

Query: 407 LAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGL 465
                  +  L L  N +    F+    +   L+ L L+ N    ++       + L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTL 196

Query: 466 YLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI 525
            L++N L+  +     +   + +I + NN L   I         L+  D+  N      +
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 526 PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
              FS  ++++++     K   K+  Q  E  T+            ++P 
Sbjct: 255 RDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 61/353 (17%), Positives = 116/353 (32%), Gaps = 73/353 (20%)

Query: 161 SLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILS 220
           +    +  ++ D+ L+ +L     +  +++ LD+S N L+  IS++ L   T +E+L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 221 DNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFI 280
            N          L + S L+    +NN +  E+    S+   +   N +           
Sbjct: 67  SNVLY---ETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNI----------- 111

Query: 281 FPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRL 340
                                         +     + ++L N+ I     L      R+
Sbjct: 112 ----------------------SRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRV 146

Query: 341 RFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLT 400
           ++LD+  N                             +      +   L+ L+L  N + 
Sbjct: 147 QYLDLKLNEID------------------------TVNFAELAASSDTLEHLNLQYNFIY 182

Query: 401 GEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKC 459
            ++     V    L +L LS+N L        F +   + W+ L  N+ V  I ++L   
Sbjct: 183 -DVKG--QVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 460 SSLEGLYLNNNSLS-GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 511
            +LE   L  N    G +  +     R+Q +             E C +  L 
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 20/204 (9%)

Query: 378 SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL---QGHMFSRNFN 434
           +I     N    +I  ++++ L  +    L     N+  L LS N L        +    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLA---P 56

Query: 435 LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN 494
            T L+ L L  N    E    L   S+L  L LNNN +       L     ++ +   NN
Sbjct: 57  FTKLELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANN 109

Query: 495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLV 554
           ++   +     Q    + + +++N I+  L         +++ LDL  N+++     +L 
Sbjct: 110 NISR-VSCSRGQ--GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 555 E-LKTLEVFSVAYNNLSGEIPEWT 577
               TLE  ++ YN +  ++    
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV 188

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 43/273 (15%), Positives = 91/273 (33%), Gaps = 28/273 (10%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
               KL+   LS   + +       + S  +L TLDL+ N           EL    ++E
Sbjct: 55  APFTKLELLNLSSNVLYE----TLDLESLSTLRTLDLNNNYVQ--------ELLVGPSIE 102

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            L    ++ +IS +    S     KN+ ++  ++   LR         +++L +    I 
Sbjct: 103 TLHA--ANNNISRVS--CSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID 157

Query: 122 LNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW 181
              +F ++   S  +L++L+L       N    +   +     L+ L ++ N L   +  
Sbjct: 158 -TVNFAELAA-SSDTLEHLNLQY-----NFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGP 208

Query: 182 CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKI 241
              +   +  + +  N+L   I  + L    ++E   L  N F      +    + R++ 
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 242 FYADNNELNAEITQSHSLTAPNFQLNRLLLSSS 274
                 +      +                   
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 35/256 (13%), Positives = 79/256 (30%), Gaps = 51/256 (19%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDE---SSLHISLLQSIASL------ 81
                  ++ ++             +  N++ L L     S +  + L     L      
Sbjct: 10  NRYKIEKVTDSSLKQA---LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 82  ------------FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQI 129
                         +L+ L ++   V      Q      S+E LH +      N +  ++
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAA------NNNISRV 114

Query: 130 IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTS 188
                   K + L+ + +    + + D        +Q L +  N++   +     A+  +
Sbjct: 115 SCSRGQGKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 189 LRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF-QIPISLEPLFNHSRLKIFYADNN 247
           L  L++ +N +         V    ++ L LS N    +    +     + +      NN
Sbjct: 171 LEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA---AGVTWISLRNN 224

Query: 248 ELN---AEITQSHSLT 260
           +L      +  S +L 
Sbjct: 225 KLVLIEKALRFSQNLE 240

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (281), Expect = 3e-26
 Identities = 86/429 (20%), Positives = 158/429 (36%), Gaps = 33/429 (7%)

Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWC--LANMTSL 189
           +    L+YL LS + L   S           V+L+ L ++ N    +LP C    NM+ L
Sbjct: 66  KFNQELEYLDLSHNKLVKISCH-------PTVNLKHLDLSFNAFD-ALPICKEFGNMSQL 117

Query: 190 RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFN--HSRLKIFYADNN 247
           + L +S   L    S  P+ HL   ++L++    +      E L +     L I +  N 
Sbjct: 118 KFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 248 ELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFL---YHQHDLEFVDLSHIKMNGE 304
           E +  I      T  N +L+ +           F   L        L  + L++I+    
Sbjct: 177 EFHF-ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 305 FPTWLLEN-------NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVE 357
               +L+           +  + L        F       + L    V ++ F       
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF-PQSY 294

Query: 358 IGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSL 417
           I +I  ++   N + +            +     LD SNN LT +           L +L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETL 353

Query: 418 ALSNNNLQ--GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLSG 474
            L  N L+    +      + +L+ L +  N    +  +   S   SL  L +++N L+ 
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 475 KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQ 534
            I R L    R++ + + +N ++  IP +  +L+ LQ L+++ N +   +    F  L  
Sbjct: 414 TIFRCL--PPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469

Query: 535 IESLDLSYN 543
           ++ + L  N
Sbjct: 470 LQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (267), Expect = 2e-24
 Identities = 74/442 (16%), Positives = 154/442 (34%), Gaps = 54/442 (12%)

Query: 133 SMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRIL 192
           S+  L+ L +S + +      +          L+ L ++ N L   +        +L+ L
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKF----NQELEYLDLSHNKLV-KISC--HPTVNLKHL 95

Query: 193 DVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAE 252
           D+SFN            +++ ++ L LS  H +   S+ P+ + +  K+          +
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEK 154

Query: 253 ITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLEN 312
                 L   N +   ++  ++    FI    +    +LE  ++  +  + +   +L   
Sbjct: 155 E-DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL--- 210

Query: 313 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDIL--PSLFSFNI 370
                                +  + +L  L ++N     +  + I  ++   +++ F+I
Sbjct: 211 ----------------SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFS 430
           S   L G +     +     +  LS + +                     ++        
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVV--------------------SDVFGFPQSY 294

Query: 431 RNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII 490
                +N+       +          SK S    L  +NN L+  +    G+LT L+ +I
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 491 MPNNHLE--GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK 548
           +  N L+    I     Q+  LQ LDIS N++S        S  K + SL++S N L   
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 549 MPHQLVELKTLEVFSVAYNNLS 570
           +   L     ++V  +  N + 
Sbjct: 415 IFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 8e-12
 Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 13/230 (5%)

Query: 342 FLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG 401
            +D S N    H+P    D+       NIS N +     S   ++  L+IL +S+N +  
Sbjct: 4   LVDRSKNGLI-HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 402 EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQS--LSKC 459
            +   +      L  L LS+N L            NLK L L  N F   +P        
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAF-DALPICKEFGNM 114

Query: 460 SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD-- 517
           S L+ L L+   L       + +L   + +++           E  Q    + L I    
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN 567
           N     ++  +   +  +E  ++     + K  + L  L  L+      N
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 36/198 (18%), Positives = 83/198 (41%), Gaps = 15/198 (7%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNL 88
            F ++N  + + +    + +    ++   +   +L    + L  ++ ++   L   L+ L
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKI---SPFLHLDFSNNLLTDTVFENCGHL-TELETL 353

Query: 89  SISYCEVNGVLRGQG-FPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL 147
            +   ++  + +        KSL+ L +S     ++    +       SL  L++S +IL
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNS--VSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 148 GTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSP 207
                R L         ++ L +  N ++ S+P  +  + +L+ L+V+ NQL  S+    
Sbjct: 412 TDTIFRCLPP------RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463

Query: 208 LVHLTSIEMLILSDNHFQ 225
              LTS++ + L  N + 
Sbjct: 464 FDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 59/385 (15%), Positives = 133/385 (34%), Gaps = 33/385 (8%)

Query: 28  GSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN 87
           G+   L  L LS  +    ++     L+    L  L L E+       + +        +
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL--LVLGETYGEKEDPEGLQDFNTESLH 169

Query: 88  LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFL---QIIGESMPSLKYLSLSG 144
           +     +    +      +  +LE  ++         S+        ++ P L  L+L+ 
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 145 SILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLA-----NMTSLRILDVSFNQL 199
                NS   + Q +     +    +++  L+G L +        ++ +L I  V  +  
Sbjct: 230 IETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 200 TGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNH-SRLKIFYADNNELNAEITQS-- 256
                S      +++ +   + +     +      +  S        NN L   + ++  
Sbjct: 289 G-FPQSYIYEIFSNMNIKNFTVS--GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 257 --HSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNA 314
               L     Q+N+L          +  +       L+ +D+S   ++ +          
Sbjct: 346 HLTELETLILQMNQL--KELSKIAEMTTQM----KSLQQLDISQNSVSYDEKKGDCSWTK 399

Query: 315 KLETLFLINDSI-GGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN 373
            L +L + ++ +    FR       R++ LD+ +N  +  +P ++   L +L   N+++N
Sbjct: 400 SLLSLNMSSNILTDTIFR---CLPPRIKVLDLHSNKIK-SIPKQVVK-LEALQELNVASN 454

Query: 374 ALHGSIP-SSFGNMKFLQILDLSNN 397
            L  S+P   F  +  LQ + L  N
Sbjct: 455 QLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 33/185 (17%)

Query: 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFV 449
           ++D S N L   +P+ L+        L +S N +   +++ +  +L+ L+ L++  NR  
Sbjct: 4   LVDRSKNGLI-HVPKDLSQ---KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 450 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL 509
                       LE L L++N L         NL  L                       
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHL----------------------- 95

Query: 510 LQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569
               D+S N      I   F N+ Q++ L LS   L       +  L   +V  V     
Sbjct: 96  ----DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 570 SGEIP 574
             +  
Sbjct: 152 GEKED 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (270), Expect = 1e-24
 Identities = 83/427 (19%), Positives = 140/427 (32%), Gaps = 61/427 (14%)

Query: 160 CSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLIL 219
           C       L + ++ L  +LP CL     +  L +  N LT S+ +        +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEV 88

Query: 220 SDNHFQ-IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDG 278
           S N    +P+    L     L IF      L A  +    L     QL  L         
Sbjct: 89  SGNQLTSLPVLPPGL---LELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL--------- 136

Query: 279 FIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHR 338
              P        L+ + +S  ++    P       ++L  L+  N+ +     LP+ P  
Sbjct: 137 ---PVLPPG---LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLPMLPSG 182

Query: 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH 398
            L+ L VS+N     +P         L+      N L  S+P+       L+ L +S N 
Sbjct: 183 -LQELSVSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPSG---LKELIVSGNR 232

Query: 399 LTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK 458
           LT  +P   +     L  L +S N L     S     + L  L +  N+    +P+SL  
Sbjct: 233 LT-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIH 282

Query: 459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518
            SS   + L  N LS +  + L  +T       P          +       +       
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR------FDMAGASAPRETRALHL 336

Query: 519 NISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTA 578
             +  L+P+        +   +   + N       ++  +     +       +I  W A
Sbjct: 337 AAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLA 396

Query: 579 QFATFNE 585
           Q A    
Sbjct: 397 QLAEDEA 403

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 58/330 (17%), Positives = 98/330 (29%), Gaps = 65/330 (19%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISL------------LQ 76
             P L TL++S N  T +             L   +   + L                L 
Sbjct: 79  LPPELRTLEVSGNQLTSLP----VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 134

Query: 77  SIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPS 136
           S+  L P L+ LS+S  ++  +           L  L             L  +      
Sbjct: 135 SLPVLPPGLQELSVSDNQLASLP-----ALPSELCKLWAYNNQ-------LTSLPMLPSG 182

Query: 137 LKYLSLSGSILGTNSSRILDQGLCSLVHL-----------------QELRMADNDLRGSL 179
           L+ LS+S      N    L      L  L                 +EL ++ N L  SL
Sbjct: 183 LQELSVSD-----NQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SL 236

Query: 180 PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISLEPLFNHSR 238
           P      + L+ L VS N+LT S+        + +  L +  N    +P   E L + S 
Sbjct: 237 P---VLPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLTRLP---ESLIHLSS 285

Query: 239 LKIFYADNNELNAEITQSH-SLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLS 297
                 + N L+    Q+   +T+       ++     G          H    +++  +
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

Query: 298 HIKMNGEFPTW-LLENNAKLETLFLINDSI 326
                     W +       +   L  D +
Sbjct: 346 REGEPAPADRWHMFGQEDNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.4 bits (167), Expect = 4e-12
 Identities = 68/437 (15%), Positives = 136/437 (31%), Gaps = 76/437 (17%)

Query: 32  SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
               L++  +  T +       L    ++  L + +++     L S+ +L P L+ L +S
Sbjct: 41  GNAVLNVGESGLTTL----PDCL--PAHITTLVIPDNN-----LTSLPALPPELRTLEVS 89

Query: 92  YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNS 151
             ++  +      P    L         +                L  L + G+ L +  
Sbjct: 90  GNQLTSL--PVLPPGLLELSIFSNPLTHLP----------ALPSGLCKLWIFGNQLTSLP 137

Query: 152 SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHL 211
                        LQEL ++DN L  SLP   + +     L    NQLT S+        
Sbjct: 138 V--------LPPGLQELSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPML----P 180

Query: 212 TSIEMLILSDNHFQ-IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLL 270
           + ++ L +SDN    +P     L    +L  +      L A  +    L     +L  L 
Sbjct: 181 SGLQELSVSDNQLASLPTLPSEL---YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL- 236

Query: 271 LSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPF 330
                      P        L+ + +S  ++    P       + L +L +  + +    
Sbjct: 237 -----------PVLPSE---LKELMVSGNRLT-SLPMLP----SGLLSLSVYRNQLT--- 274

Query: 331 RLP--IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKF 388
           RLP  +        +++  N       ++    + S   ++        +  S+      
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSER-TLQALREITSAPGYSGPIIRFDMAGASAPRET-- 331

Query: 389 LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448
            + L L+         E         +     +N      FS   +  +     ++   F
Sbjct: 332 -RALHLAAADWLVPAREGEPAPADRWHMFGQEDNADA---FSLFLDRLSETENFIKDAGF 387

Query: 449 VGEIPQSLSKCSSLEGL 465
             +I   L++ +  E L
Sbjct: 388 KAQISSWLAQLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 36/236 (15%)

Query: 28  GSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN 87
                L  L    N  T +           + L+ L++ ++      L S+ +L   L  
Sbjct: 158 ALPSELCKLWAYNNQLTSL-------PMLPSGLQELSVSDNQ-----LASLPTLPSELYK 205

Query: 88  LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL 147
           L      +  +           L+ L +S          L  +      LK L +SG   
Sbjct: 206 LWAYNNRLTSLP-----ALPSGLKELIVSGNR-------LTSLPVLPSELKELMVSG--- 250

Query: 148 GTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSP 207
             N    L         L  L +  N L   LP  L +++S   +++  N L+   +   
Sbjct: 251 --NRLTSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQA 303

Query: 208 LVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
           L  +TS           +  ++       +R     A +  + A   +       +
Sbjct: 304 LREITSAPGYSGPII--RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (263), Expect = 4e-24
 Identities = 104/525 (19%), Positives = 162/525 (30%), Gaps = 112/525 (21%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNL 88
           S   L       +N T++      E  N  +        S    +           +   
Sbjct: 9   SNTFLQEPLRHSSNLTEMP----VEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REMAVS 63

Query: 89  SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILG 148
            +  C              +    L        LN   L  + E  P L+ L  S     
Sbjct: 64  RLRDC------------LDRQAHELE-------LNNLGLSSLPELPPHLESLVASC---- 100

Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL----------------ANMTSLRIL 192
            NS   L +   SL  L         L   LP  L                 N + L+I+
Sbjct: 101 -NSLTELPELPQSLKSLLVDNNNLKAL-SDLPPLLEYLGVSNNQLEKLPELQNSSFLKII 158

Query: 193 DVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAE 252
           DV  N L   +         S+E +   +N  +    L  L N   L   YADNN L   
Sbjct: 159 DVDNNSLK-KLPDL----PPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKL 210

Query: 253 ITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLEN 312
                SL   +      +L             L +   L  +   +  +    P      
Sbjct: 211 PDLPLSLE--SIVAGNNILEE--------LPELQNLPFLTTIYADNNLLK-TLPDLP--- 256

Query: 313 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIST 372
              LE L + ++ +     LP  P + L FLDVS N F       + ++ P+L+  N S+
Sbjct: 257 -PSLEALNVRDNYLT---DLPELP-QSLTFLDVSENIFS-----GLSELPPNLYYLNASS 306

Query: 373 NALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRN 432
           N +  S+     +   L+ L++SNN L  E+P         L  L  S N+L        
Sbjct: 307 NEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPP----RLERLIASFNHLA----EVP 353

Query: 433 FNLTNLKWLLLEGNRFVGEIPQSLSK----------------CSSLEGLYLNNNSLSGKI 476
               NLK L +E N    E P                       +L+ L++  N L  + 
Sbjct: 354 ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EF 411

Query: 477 PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 521
           P    ++  L+   M +  +  P        D L+      ++  
Sbjct: 412 PDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 7e-22
 Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 30/247 (12%)

Query: 331 RLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ 390
           RL     R+   L+++N          + ++ P L S   S N+L   +P    ++K L 
Sbjct: 64  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVG 450
           + + +   L+   P         L  L +SNN L+        N + LK + ++ N    
Sbjct: 118 VDNNNLKALSDLPP--------LLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK- 166

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL 510
           ++P       SLE +   NN L  ++P  L NL  L  I   NN L+  +P        L
Sbjct: 167 KLPDLP---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKK-LPDLPLS---L 217

Query: 511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
           + +   +N +          NL  + ++    N L   +P     L+ L V      +L 
Sbjct: 218 ESIVAGNNILE---ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLP 273

Query: 571 GEIPEWT 577
                 T
Sbjct: 274 ELPQSLT 280

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 4e-21
 Identities = 80/452 (17%), Positives = 152/452 (33%), Gaps = 83/452 (18%)

Query: 140 LSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLAN-------------M 186
             L   +  +++   +     ++    E   A ++   + P                   
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISLEPLFNHSRLKIFYAD 245
                L+++   L+ S+          +E L+ S N    +P   + L     L +   +
Sbjct: 71  RQAHELELNNLGLS-SLPEL----PPHLESLVASCNSLTELPELPQSL---KSLLVDNNN 122

Query: 246 NNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEF 305
              L+        L   N QL +L            P+       L+ +D+ +  +  + 
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLEKL------------PELQNSSF-LKIIDVDNNSLK-KL 168

Query: 306 PTWLLENNAKLETLFLINDSIGGPFRLP-IHPHRRLRFLDVSNNNFQGHMPVEIGDILPS 364
           P         LE +   N+ +     LP +     L  +   NN+ +     ++ D+  S
Sbjct: 169 PDLP----PSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLK-----KLPDLPLS 216

Query: 365 LFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL 424
           L S     N L         N+ FL  +   NN L   +P+       +L +L + +N L
Sbjct: 217 LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP----SLEALNVRDNYL 269

Query: 425 QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 484
              +     +LT L       +      P       +L  L  ++N +   +     +L 
Sbjct: 270 T-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLE 320

Query: 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK 544
            L    + NN L   +P    +   L+ L  S N+++   +P    NLK    L + YN 
Sbjct: 321 EL---NVSNNKLIE-LPALPPR---LERLIASFNHLAE--VPELPQNLK---QLHVEYNP 368

Query: 545 LNGKMPHQLVELKTLEVFSVAYNNLSGEIPEW 576
           L  + P     ++ L +     N+   E+PE 
Sbjct: 369 LR-EFPDIPESVEDLRM-----NSHLAEVPEL 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 18/144 (12%)

Query: 431 RNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII 490
           RN + T L+  L   +    E+P       S    Y   +      P   G    +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 491 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP 550
           + +                   L++++  +S   +P    +L   ESL  S N L  ++P
Sbjct: 65  LRDCLDRQ-----------AHELELNNLGLSS--LPELPPHL---ESLVASCNSLT-ELP 107

Query: 551 HQLVELKTLEVFSVAYNNLSGEIP 574
                LK+L V +     LS   P
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP 131

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (262), Expect = 8e-24
 Identities = 78/430 (18%), Positives = 150/430 (34%), Gaps = 35/430 (8%)

Query: 133 SMPSLKYLSLSGSILGTNSSRILDQGLC-SLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
            +  L+ L LS + + +     LD  +      L+ L ++ N L+ ++      M SLR 
Sbjct: 74  FLSELRVLRLSHNRIRS-----LDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRH 125

Query: 192 LDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPL-FNHSRLKIFYADNNELN 250
           LD+SFN            +LT +  L LS   F+    L+ L   H  L     D    +
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYH 182

Query: 251 AEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLL 310
            +  ++ SL  PN  +  L+   +          +     L+  ++     N +     L
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 311 EN---NAKLETLFLINDSIGGPFRLPIHP---HRRLRFLDVSNNNFQGHMPVEIGDI--- 361
                   L  + L +        + +      R + +L++ N      +  E       
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 362 -LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS 420
            L SL   ++       S  + +     + I  LS +     I         +   L  +
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFT 361

Query: 421 NNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL----SGK 475
            N        +    L  L+ L+L+ N       +      ++  L   + SL    S  
Sbjct: 362 QNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHA 419

Query: 476 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQI 535
             R       +  + + +N L     V  C    +++LD+ +N I    IP   ++L+ +
Sbjct: 420 YDRTCAWAESILVLNLSSNML--TGSVFRCLPPKVKVLDLHNNRIMS--IPKDVTHLQAL 475

Query: 536 ESLDLSYNKL 545
           + L+++ N+L
Sbjct: 476 QELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (259), Expect = 2e-23
 Identities = 89/480 (18%), Positives = 167/480 (34%), Gaps = 40/480 (8%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSI-ASLFPSLKNLS 89
           P    L LS N+ +++      ++   + L  L      L  + ++S+   +F   ++L 
Sbjct: 52  PRTKALSLSQNSISEL---RMPDISFLSELRVL-----RLSHNRIRSLDFHVFLFNQDLE 103

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMSFAP---IALNTSFLQIIGESMPSLKYLSLSGSI 146
                 N  L+        SL HL +SF     + +   F      ++  L +L LS + 
Sbjct: 104 YLDVSHNR-LQNISCCPMASLRHLDLSFNDFDVLPVCKEF-----GNLTKLTFLGLSAAK 157

Query: 147 LGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANM-TSLRILDVSFNQLTGSISS 205
                   +       +    L +    ++G     L    T++  L    N L     +
Sbjct: 158 FRQLDLLPVAHL---HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 206 SPLVHLTSIEMLILSDNHF---QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP 262
             +  L  +++  +  N     ++   L  L     L      + E   + +        
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 263 NFQLNRLLLSS-SYGDGFIFPKFLYHQHDLEFVDLSHIKMNG--EFPTWLLENNAKLETL 319
              +  L + + +  +     +F Y +  L+ + + H+K          L    A++   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 320 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSI 379
            L          +         FL+ + N F      +    L  L +  +  N L  + 
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NF 392

Query: 380 PSSFG---NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLT 436
                   NM  L+ LD+S N L     +       ++  L LS+N L G +F     L 
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC---LP 449

Query: 437 -NLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQYIIMPNN 494
             +K L L  NR    IP+ ++   +L+ L + +N L   +P      LT LQYI + +N
Sbjct: 450 PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 67/440 (15%), Positives = 132/440 (30%), Gaps = 63/440 (14%)

Query: 187 TSLRILDVSFNQLT-----------------------GSISSSPLVHLTSIEMLILSDNH 223
              + L +S N ++                        S+     +    +E L +S N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 224 FQ-IP-------------------ISLEPLFNH-SRLKIFYADNNEL---NAEITQSHSL 259
            Q I                    + +   F + ++L        +    +        L
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171

Query: 260 TAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETL 319
           +     L    +     +    P             L  +++N           + ++ L
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK-L 230

Query: 320 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDIL--PSLFSFNISTNALHG 377
              N      F   +     L  + + +        V++        +   NI    +  
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 378 SIP-----SSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRN 432
            I       S   +K L I  + N        E L      +N   LS ++         
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 433 FNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS--GKIPRWLGNLTRLQYII 490
            + ++  +L    N F   + Q  S    L+ L L  N L    K+     N++ L+ + 
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 491 MPNNHLEGPIPVEFCQL-DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM 549
           +  N L        C   + + +L++S N ++G +       +K    LDL  N++   +
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV---LDLHNNRIM-SI 465

Query: 550 PHQLVELKTLEVFSVAYNNL 569
           P  +  L+ L+  +VA N L
Sbjct: 466 PKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 78/450 (17%), Positives = 158/450 (35%), Gaps = 63/450 (14%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
           S     SL  LDLS+N+F  + +   +E  N T L +L L  +      L  +A L  S 
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPV--CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC 173

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGS 145
             L +    + G           +   LH+ F P +L +  + +   ++  L+  ++  +
Sbjct: 174 ILLDLVSYHIKGGET--ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

Query: 146 ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
                        L     L  +                   +L+ ++ ++         
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNV-------------------TLQHIETTWKCSVKLFQ- 271

Query: 206 SPLVHLTSIEMLILSDNHFQIPISLEPL-FNHSRLKIFYADNNELNAEITQSHSLTAPNF 264
                   +E L + +      I  E   ++ + LK    ++ +    +    +L +   
Sbjct: 272 --FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329

Query: 265 QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIND 324
           ++N  +LS S    FI            F++ +               N           
Sbjct: 330 EMNIKMLSIS-DTPFIHMVCPPSPSSFTFLNFT--------------QN-VFTDSVF--- 370

Query: 325 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPV-EIGDILPSLFSFNISTNAL-HGSIPSS 382
              G   L      RL+ L +  N  +    V  +   + SL + ++S N+L   +   +
Sbjct: 371 --QGCSTLK-----RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 383 FGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWL 441
               + + +L+LS+N LTG +   L      +  L L NN +      ++  +L  L+ L
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMS--IPKDVTHLQALQEL 478

Query: 442 LLEGNRFVGEIPQ-SLSKCSSLEGLYLNNN 470
            +  N+    +P     + +SL+ ++L++N
Sbjct: 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 48/316 (15%), Positives = 99/316 (31%), Gaps = 19/316 (6%)

Query: 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN 349
           +L  + LSH ++       +   N  LE L + ++ +     +   P   LR LD+S N+
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFND 132

Query: 350 FQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQI-LDLSNNHLTGEIPEYLA 408
           F      +    L  L    +S             ++    I LDL + H+ G   E L 
Sbjct: 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192

Query: 409 VGCVNLNSLALSNNNLQGHMFSRNFN------LTNLKWLLLEGNRFVGEIPQSLSKCSSL 462
           +    +  L    N+L     + + N      L+N+K       R +  + +     + L
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 463 EGLYLNNNSLSGKIPRWLGNL--TRLQYIIMPNNHLEGPIPVEF-----CQLDLLQILDI 515
                +  +      +         ++Y+ + N  +   I  E        L  L I  +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 516 SDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
            +         + +S   ++    LS +              +    +   N  +  + +
Sbjct: 313 KNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 576 WTAQFATFNESSYEGN 591
             +          + N
Sbjct: 372 GCSTLKRLQTLILQRN 387

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 8/145 (5%)

Query: 436 TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQYIIMPNN 494
              K L L  N         +S  S L  L L++N +   +   +      L+Y+ + +N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLV 554
            L+    +  C +  L+ LD+S N+     +   F NL ++  L LS  K        L+
Sbjct: 111 RLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLL 164

Query: 555 ELKTLEVFSVAYNNLSGEIPEWTAQ 579
            +  L +  +  + +S  I     +
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETE 189

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (255), Expect = 9e-24
 Identities = 58/242 (23%), Positives = 94/242 (38%), Gaps = 24/242 (9%)

Query: 315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNA 374
           KLE L+L  + +     LP    + L+ L V  N     +   + + L  +    + TN 
Sbjct: 101 KLERLYLSKNQLK---ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNP 156

Query: 375 LHGSI--PSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMF 429
           L  S     +F  MK L  + +++ ++T  IP+ L     +L  L L  N +        
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASL 212

Query: 430 SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489
                L NL  L L  N        SL+    L  L+LNNN L  K+P  L +   +Q +
Sbjct: 213 K---GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 490 IMPNNHLEG------PIPVEFCQLDLLQILDISDNNISGRLI-PSTFSNLKQIESLDLSY 542
            + NN++          P    +      + +  N +    I PSTF  +    ++ L  
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 543 NK 544
            K
Sbjct: 329 YK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 20/242 (8%)

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMKFLQILDLSN 396
           + L  L + NN     +       L  L    +S N L   +P         LQ L +  
Sbjct: 76  KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT---LQELRVHE 130

Query: 397 NHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRN-F-NLTNLKWLLLEGNRFVGEIPQ 454
           N +T ++ + +  G   +  + L  N L+        F  +  L ++ +        IPQ
Sbjct: 131 NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

Query: 455 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514
            L    SL  L+L+ N ++      L  L  L  + +  N +             L+ L 
Sbjct: 189 GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG------KMPHQLVELKTLEVFSVAYNN 568
           +++N +    +P   ++ K I+ + L  N ++         P    +  +    S+  N 
Sbjct: 247 LNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 569 LS 570
           + 
Sbjct: 305 VQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 9e-21
 Identities = 49/241 (20%), Positives = 87/241 (36%), Gaps = 21/241 (8%)

Query: 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL 399
           LR +  S+   +  +P    D+ P     ++  N +       F N+K L  L L NN +
Sbjct: 33  LRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 400 TGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSL 456
           + +I        V L  L LS N L+     M         L+ L +  N          
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVF 141

Query: 457 SKCSSLEGLYLNNNSLSGKI--PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514
           +  + +  + L  N L            + +L YI + + ++   IP        L  L 
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELH 198

Query: 515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP 574
           +  N I+ ++  ++   L  +  L LS+N ++      L     L    +  N L  ++P
Sbjct: 199 LDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 575 E 575
            
Sbjct: 257 G 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 49/302 (16%), Positives = 101/302 (33%), Gaps = 42/302 (13%)

Query: 164 HLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH 223
               L + +N +         N+ +L  L +  N+++  IS      L  +E L LS N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 224 F-QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF----QLNRLLLSS-SYGD 277
             ++P   E +     L+      NE+         +    F    Q+  + L +     
Sbjct: 112 LKELP---EKMP--KTLQELRVHENEIT-------KVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 278 GFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPH 337
             I          L ++ ++   +    P  L  +   L  L L  + I       +   
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITK-----VDAA 210

Query: 338 -----RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQIL 392
                  L  L +S N+    +        P L   +++ N L   +P    + K++Q++
Sbjct: 211 SLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 393 DLSNNHLT-----GEIPEYLAVGCVNLNSLALSNNNLQGHMFSRN--FNLTNLKWLLLEG 445
            L NN+++        P        + + ++L +N +Q      +    +     + L  
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 446 NR 447
            +
Sbjct: 329 YK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 45/231 (19%), Positives = 92/231 (39%), Gaps = 31/231 (13%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSI-ASLFPS 84
              +  +L+TL L  N  + I+            LE L L ++      L+ +   +  +
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGA---FAPLVKLERLYLSKNQ-----LKELPEKMPKT 122

Query: 85  LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL----NTSFLQIIGESMPSLKYL 140
           L+ L +   E+  V +   F     +  + +   P+      N +F     + M  L Y+
Sbjct: 123 LQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAF-----QGMKKLSYI 176

Query: 141 SLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLT 200
            ++       +   + QGL     L EL +  N +       L  + +L  L +SFN ++
Sbjct: 177 RIAD-----TNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 201 GSISSSPLVHLTSIEMLILSDNHFQ-IPISLEPLFNHSRLKIFYADNNELN 250
            ++ +  L +   +  L L++N    +P     L +H  +++ Y  NN ++
Sbjct: 230 -AVDNGSLANTPHLRELHLNNNKLVKVP---GGLADHKYIQVVYLHNNNIS 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (259), Expect = 1e-23
 Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 11/215 (5%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
            I  +    N+  N +      +F ++  L++L L  N +  +I      G  +LN+L L
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130

Query: 420 SNNNL---QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYL-NNNSLSGK 475
            +N L       F     L+ L+ L L  N        + ++  SL  L L     L   
Sbjct: 131 FDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 476 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQI 535
                  L  L+Y+ +   +++  +P     L  L+ L++S N+    + P +F  L  +
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSL 244

Query: 536 ESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
           + L +  ++++    +    L +L   ++A+NNLS
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 15/191 (7%)

Query: 389 LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN---LQGHMFSRNFNLTNLKWLLLEG 445
              +  +   L+ E+P+ +      LN   L  NN   +Q   F    +L +L+ L L  
Sbjct: 56  FSKVVCTRRGLS-EVPQGIPSNTRYLN---LMENNIQMIQADTFR---HLHHLEVLQLGR 108

Query: 446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-F 504
           N        + +  +SL  L L +N L+         L++L+ + + NN +E  IP   F
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAF 167

Query: 505 CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV 564
            ++  L  LD+ +      +    F  L  ++ L+L    +  K    L  L  LE   +
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEM 225

Query: 565 AYNNLSGEIPE 575
           + N+   EI  
Sbjct: 226 SGNHFP-EIRP 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 53/237 (22%), Positives = 86/237 (36%), Gaps = 20/237 (8%)

Query: 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPH-----RRLRFLD 344
           +  +++L    +          +   LE L L  +SI       I          L  L+
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ-----IEVGAFNGLASLNTLE 129

Query: 345 VSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSN-NHLTGEI 403
           + +N     +P    + L  L    +  N +      +F  +  L  LDL     L   I
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YI 187

Query: 404 PEYLAVGCVNLNSLALSNNNLQG-HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSL 462
            E    G  NL  L L   N++     +    L  L+ L + GN F    P S    SSL
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 463 EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDN 518
           + L++ N+ +S         L  L  + + +N+L   +P + F  L  L  L +  N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 8e-15
 Identities = 50/248 (20%), Positives = 87/248 (35%), Gaps = 26/248 (10%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA-SLFPSLKNL 88
             +   L+L  NN   I         +  +LE L L  +   I  ++  A +   SL  L
Sbjct: 74  PSNTRYLNLMENNIQMI---QADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNTL 128

Query: 89  SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL--NTSFLQIIGESMPSLKYLSLSGSI 146
            +    +  +  G  F     L  L +   PI    + +F       +PSL  L L    
Sbjct: 129 ELFDNWLTVIPSG-AFEYLSKLRELWLRNNPIESIPSYAF-----NRVPSLMRLDLGEL- 181

Query: 147 LGTNS-SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
                   I +     L +L+ L +   +++  +P  L  +  L  L++S N     I  
Sbjct: 182 ---KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRP 235

Query: 206 SPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 265
                L+S++ L + ++   + I        + L      +N L+   +  H L  P   
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLS---SLPHDLFTPLRY 291

Query: 266 LNRLLLSS 273
           L  L L  
Sbjct: 292 LVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 53/294 (18%), Positives = 95/294 (32%), Gaps = 74/294 (25%)

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
           ++ R L++  N +   I +    HL  +E+L L  N  +  I +      + L      +
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFD 132

Query: 247 NELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306
           N                                                L+ I      P
Sbjct: 133 NW-----------------------------------------------LTVI------P 139

Query: 307 TWLLENNAKLETLFLINDSI----GGPFR-LPIHPHRRLRFLDVSNNNFQGHMPVEIGDI 361
           +   E  +KL  L+L N+ I       F  +P      L  LD+       ++     + 
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEGAFEG 194

Query: 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN 421
           L +L   N+    +   +P+    +  L+ L++S NH   EI      G  +L  L + N
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251

Query: 422 NNL---QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 472
           + +   + + F     L +L  L L  N          +    L  L+L++N  
Sbjct: 252 SQVSLIERNAFD---GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 44/226 (19%), Positives = 80/226 (35%), Gaps = 29/226 (12%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDE---SSLHISLLQSIASLFPSL 85
               L  L L  N+   I +      +   +L  L L +   + +     +        L
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGA---FNGLASLNTLELFDNWLTVIPSGAFEY----LSKL 149

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES----MPSLKYLS 141
           + L +    +   +    F    SL  L +           L+ I E     + +LKYL+
Sbjct: 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLG------ELKKLEYISEGAFEGLFNLKYLN 202

Query: 142 LSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTG 201
           L        + + +   L  LV L+EL M+ N      P     ++SL+ L V  +Q++ 
Sbjct: 203 LGM-----CNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS- 255

Query: 202 SISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNN 247
            I  +    L S+  L L+ N+    +  +       L   +  +N
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 50/263 (19%), Positives = 93/263 (35%), Gaps = 36/263 (13%)

Query: 164 HLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH 223
           + + L + +N+++        ++  L +L +  N +   I       L S+  L L DN 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 224 FQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPK 283
             + I        S+L+  +  NN +        S+ +  F                   
Sbjct: 135 LTV-IPSGAFEYLSKLRELWLRNNPI-------ESIPSYAFN------------------ 168

Query: 284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLP-IHPHRRLRF 342
                  L  +DL  +K          E    L+ L L   +I     +P + P   L  
Sbjct: 169 ---RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEE 222

Query: 343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE 402
           L++S N+F   +       L SL    +  + +     ++F  +  L  L+L++N+L+  
Sbjct: 223 LEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S 280

Query: 403 IPEYLAVGCVNLNSLALSNNNLQ 425
           +P  L      L  L L +N   
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 46/257 (17%), Positives = 96/257 (37%), Gaps = 43/257 (16%)

Query: 135 PSLKYLSLSGSILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILD 193
            + +YL+L       N+ +++       L HL+ L++  N +R         + SL  L+
Sbjct: 75  SNTRYLNLME-----NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 194 VSFNQLTGSISSSPLVHLTSIEMLILSDNHFQI--PISLEPLFNHSRLKIFYADNNELNA 251
           +  N LT  I S    +L+ +  L L +N  +     +   + +  RL +   +  +L  
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL--GELKKL-E 185

Query: 252 EITQS-----HSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMN--GE 304
            I++       +L   N  +  +            P        LE +++S    N   E
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK---------DMPNLT-PLVGLEELEMSG---NHFPE 232

Query: 305 FPTWLLENNAKLETLFLINDSIGGPFRLPIHPH-----RRLRFLDVSNNNFQGHMPVEIG 359
                    + L+ L+++N  +       I  +       L  L++++NN    +P ++ 
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSL-----IERNAFDGLASLVELNLAHNNLS-SLPHDLF 286

Query: 360 DILPSLFSFNISTNALH 376
             L  L   ++  N  +
Sbjct: 287 TPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 45/255 (17%), Positives = 83/255 (32%), Gaps = 31/255 (12%)

Query: 75  LQSI-ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL--NTSFLQIIG 131
           L  +   +  + + L++    +  +     F     LE L +    I      +F     
Sbjct: 66  LSEVPQGIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAF----- 119

Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
             + SL  L L  + L    + I       L  L+EL + +N +     +    + SL  
Sbjct: 120 NGLASLNTLELFDNWL----TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 192 LDVS-FNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELN 250
           LD+    +L   IS      L +++ L L   + +    +  L     L+      N   
Sbjct: 176 LDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHF- 230

Query: 251 AEITQSHSLTAPNF----QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306
                   +   +F     L +L + +S     I          L  ++L+H  ++   P
Sbjct: 231 ------PEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLS-SLP 282

Query: 307 TWLLENNAKLETLFL 321
             L      L  L L
Sbjct: 283 HDLFTPLRYLVELHL 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 1e-23
 Identities = 51/260 (19%), Positives = 95/260 (36%), Gaps = 32/260 (12%)

Query: 331 RLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ 390
            L      +   L ++  N    +P  +    P +    I+ NAL  S+P    +   L+
Sbjct: 52  LLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLPELPAS---LE 103

Query: 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVG 450
            LD  +N L+  +PE  A    +L  L + NN L             L+++  + N+   
Sbjct: 104 YLDACDNRLS-TLPELPA----SLKHLDVDNNQLT----MLPELPALLEYINADNNQLT- 153

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL--- 507
            +P+  +   SLE L + NN L+  +P    +L  L    +  N LE  +P    +    
Sbjct: 154 MLPELPT---SLEVLSVRNNQLT-FLPELPESLEALD---VSTNLLES-LPAVPVRNHHS 205

Query: 508 -DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAY 566
            +        +N I+   IP    +L    ++ L  N L+ ++   L +      +    
Sbjct: 206 EETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 567 NNLSGEIPEWTAQFATFNES 586
              S    +         ++
Sbjct: 264 IYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 7e-17
 Identities = 52/316 (16%), Positives = 103/316 (32%), Gaps = 45/316 (14%)

Query: 227 PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLY 286
             SL     ++ +   YA   +  +   +      P    N  +         +  + L 
Sbjct: 10  NFSLSQNSFYNTISGTYA---DYFSAWDKWEKQALPGENRNEAVS--------LLKECLI 58

Query: 287 HQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVS 346
           +Q     + L+ + ++   P  L      +  L +  +++     LP  P   L +LD  
Sbjct: 59  NQ--FSELQLNRLNLS-SLPDNLPPQ---ITVLEITQNALI---SLPELPAS-LEYLDAC 108

Query: 347 NNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEY 406
           +N         + ++  SL   ++  N L   +P        L+ ++  NN LT  +PE 
Sbjct: 109 DNRLS-----TLPELPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPEL 158

Query: 407 LAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLE--- 463
                 +L  L++ NN L   +        +L+ L +  N     +P    +    E   
Sbjct: 159 PT----SLEVLSVRNNQLT-FLPE---LPESLEALDVSTNLLE-SLPAVPVRNHHSEETE 209

Query: 464 -GLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 522
                  N ++  IP  + +L     II+ +N L   I     Q              S 
Sbjct: 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 523 RLIPSTFSNLKQIESL 538
                   +    +++
Sbjct: 269 SDGQQNTLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 6e-14
 Identities = 49/336 (14%), Positives = 95/336 (28%), Gaps = 94/336 (27%)

Query: 173 NDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISLE 231
           +                 +   + N+    +    +   +    L L+  +   +P +L 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE---LQLNRLNLSSLPDNLP 79

Query: 232 PLFNHSRLKIFYADNNELN---AEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQ 288
           P     ++ +     N L            L A + +L+ L            P+     
Sbjct: 80  P-----QITVLEITQNALISLPELPASLEYLDACDNRLSTL------------PELPASL 122

Query: 289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN 348
             L+                 ++NN +L  L    +               L +++  NN
Sbjct: 123 KHLD-----------------VDNN-QLTML---PELPAL-----------LEYINADNN 150

Query: 349 NFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA 408
                                         +P    +   L++L + NN LT  +PE   
Sbjct: 151 QLT--------------------------MLPELPTS---LEVLSVRNNQLT-FLPELPE 180

Query: 409 VGCVNLNSLALSNNNLQG--HMFSRNFNLTNLKWLL-LEGNRFVGEIPQSLSKCSSLEGL 465
               +L +L +S N L+    +  RN +    +       NR    IP+++        +
Sbjct: 181 ----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235

Query: 466 YLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP 501
            L +N LS +I   L   T       P  +      
Sbjct: 236 ILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 62/349 (17%), Positives = 115/349 (32%), Gaps = 52/349 (14%)

Query: 1   YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDI--AITTTQELHNFT 58
           +    K +   L G    +   LL+        + L L+  N + +   +          
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRLNLSSLPDNL--------PP 80

Query: 59  NLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFA 118
            +  L + +++     L S+  L  SL+ L      ++ +          SL+HL +   
Sbjct: 81  QITVLEITQNA-----LISLPELPASLEYLDACDNRLSTLP-----ELPASLKHLDVDNN 130

Query: 119 PIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGS 178
                   L ++ E    L+Y++   + L                 L+ L + +N L   
Sbjct: 131 Q-------LTMLPELPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLT-F 174

Query: 179 LPWCLANMTSLRILDVSFNQLTGSISSSP--LVHLTSIE-MLILSDNHF-QIPISLEPLF 234
           LP       SL  LDVS N L  S+ + P    H    E      +N    IP +   + 
Sbjct: 175 LP---ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPEN---IL 227

Query: 235 NHSRLKIFYADNNELNAEITQSHSLT--APNFQLNRLLLSSSYGDGFIFPKFLYHQHDLE 292
           +         ++N L++ I +S S     P++   R+  S S G      + L       
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

Query: 293 FVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLR 341
           F +     ++  +  +  E +A   T     D +            R +
Sbjct: 288 FPENKQSDVSQIWHAFEHEEHA--NTFSAFLDRLSDTVSARNTSGFREQ 334

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (250), Expect = 2e-23
 Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 13/216 (6%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
            I  +     +  N +     +SF   + L IL L +N L   I      G   L  L L
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 420 SNNN----LQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLSG 474
           S+N     +    F     L  L  L L+      E+        ++L+ LYL +N+L  
Sbjct: 88  SDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 475 KIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK 533
            +P     +L  L ++ +  N +       F  L  L  L +  N ++  + P  F +L 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLG 201

Query: 534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569
           ++ +L L  N L+      L  L+ L+   +  N  
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 10/208 (4%)

Query: 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL 399
            + + +  N    H+P        +L    + +N L     ++F  +  L+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 400 TGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEIP-QS 455
              +      G   L++L L    LQ     +F     L  L++L L+ N     +P  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ-ALPDDT 148

Query: 456 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 515
                +L  L+L+ N +S    R    L  L  +++  N +    P  F  L  L  L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 516 SDNNISGRLIPSTFSNLKQIESLDLSYN 543
             NN+S  L     + L+ ++ L L+ N
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 13/198 (6%)

Query: 378 SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFN 434
           ++P         Q + L  N ++  +P      C NL  L L +N L       F+    
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---G 78

Query: 435 LTNLKWLLLEGNRFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN 493
           L  L+ L L  N  +  +  +       L  L+L+   L    P     L  LQY+ + +
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 494 NHLEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQ 552
           N L+  +P + F  L  L  L +  N IS  +    F  L  ++ L L  N++    PH 
Sbjct: 139 NALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 553 LVELKTLEVFSVAYNNLS 570
             +L  L    +  NNLS
Sbjct: 197 FRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 20/201 (9%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLF---PSL 85
           +  +L  L L  N    I             LE L L +++  +  +    + F     L
Sbjct: 54  ACRNLTILWLHSNVLARIDAAA---FTGLALLEQLDLSDNA-QLRSVD--PATFHGLGRL 107

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPI-ALNTSFLQIIGESMPSLKYLSLSG 144
             L +  C +   L    F    +L++L++    + AL     +     + +L +L L G
Sbjct: 108 HTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR----DLGNLTHLFLHG 162

Query: 145 SILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
           + +    S + ++    L  L  L +  N +    P    ++  L  L +  N L+ ++ 
Sbjct: 163 NRI----SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP 217

Query: 205 SSPLVHLTSIEMLILSDNHFQ 225
           +  L  L +++ L L+DN + 
Sbjct: 218 TEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 37/221 (16%), Positives = 71/221 (32%), Gaps = 19/221 (8%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA-SLFPSLKNL 88
             +   + L  N  + +            NL  L L  +   ++ + + A +    L+ L
Sbjct: 31  PAASQRIFLHGNRISHV---PAASFRACRNLTILWLHSN--VLARIDAAAFTGLALLEQL 85

Query: 89  SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL--NTSFLQIIGESMPSLKYLSLSGSI 146
            +S       +    F     L  LH+    +       F       + +L+YL L  + 
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-----RGLAALQYLYLQDNA 140

Query: 147 LGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSS 206
           L      + D     L +L  L +  N +          + SL  L +  N++   +   
Sbjct: 141 L----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

Query: 207 PLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNN 247
               L  +  L L  N+    +  E L     L+    ++N
Sbjct: 196 AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 3/141 (2%)

Query: 436 TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495
              + + L GNR       S   C +L  L+L++N L+         L  L+ + + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 496 LEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLV 554
               +    F  L  L  L +    +   L P  F  L  ++ L L  N L         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 555 ELKTLEVFSVAYNNLSGEIPE 575
           +L  L    +  N +S  +PE
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL 510
            +P  +   ++ + ++L+ N +S            L  + + +N L       F  L LL
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
           + LD+SDN     + P+TF  L ++ +L L    L    P     L  L+   +  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 571 GEIPE 575
             +P+
Sbjct: 143 -ALPD 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 41/244 (16%), Positives = 78/244 (31%), Gaps = 42/244 (17%)

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
            + + + +  N+++  + ++      ++ +L L  N     I        + L+     +
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSD 89

Query: 247 NELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306
           N       Q  S+    F                          L  + L    +  E  
Sbjct: 90  NA------QLRSVDPATFH---------------------GLGRLHTLHLDRCGLQ-ELG 121

Query: 307 TWLLENNAKLETLFLINDSI----GGPFR-LPIHPHRRLRFLDVSNNNFQGHMPVEIGDI 361
             L    A L+ L+L ++++       FR L       L  L +  N     +P      
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLG-----NLTHLFLHGNRIS-SVPERAFRG 175

Query: 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN 421
           L SL    +  N +    P +F ++  L  L L  N+L+  +P         L  L L++
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLND 234

Query: 422 NNLQ 425
           N   
Sbjct: 235 NPWV 238

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (257), Expect = 2e-23
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 11/215 (5%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
            I  +    N+  N +     +SF +++ L+IL LS NH+   I      G  NLN+L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 420 SNNNLQG---HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYL-NNNSLSGK 475
            +N L       F     L+ LK L L  N        + ++  SL  L L     LS  
Sbjct: 120 FDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 476 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQI 535
                  L+ L+Y+ +   +L   IP     L  L  LD+S N++S  + P +F  L  +
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHL 233

Query: 536 ESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
           + L +  +++     +    L++L   ++A+NNL+
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 5e-18
 Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 14/186 (7%)

Query: 389 LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN---LQGHMFSRNFNLTNLKWLLLEG 445
              +     +L  E+P+ ++     LN   L  N    ++ + F    +L +L+ L L  
Sbjct: 45  FSKVICVRKNLR-EVPDGISTNTRLLN---LHENQIQIIKVNSFK---HLRHLEILQLSR 97

Query: 446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-F 504
           N        + +  ++L  L L +N L+         L++L+ + + NN +E  IP   F
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAF 156

Query: 505 CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV 564
            ++  L+ LD+ +      +    F  L  +  L+L+   L  ++P+ L  L  L+   +
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDL 214

Query: 565 AYNNLS 570
           + N+LS
Sbjct: 215 SGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.5 bits (204), Expect = 7e-17
 Identities = 48/211 (22%), Positives = 73/211 (34%), Gaps = 17/211 (8%)

Query: 315 KLETLFLINDSIGGPFRLPIHPH-----RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369
            LE L L  + I       I          L  L++ +N     +P      L  L    
Sbjct: 89  HLEILQLSRNHIRT-----IEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142

Query: 370 ISTNALHGSIPSSFGNMKFLQILDLS-NNHLTGEIPEYLAVGCVNLNSLALSNNNLQG-H 427
           +  N +      +F  +  L+ LDL     L+  I E    G  NL  L L+  NL+   
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREIP 201

Query: 428 MFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 487
             +    L  L  L L GN      P S      L+ L++  + +         NL  L 
Sbjct: 202 NLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 488 YIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518
            I + +N+L       F  L  L+ + +  N
Sbjct: 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 30/227 (13%)

Query: 3   GLRKLKSFGLSGVGIRDGSKLLQSMGSF---PSLNTLDLSYNNFTDIAITTTQELHNFTN 59
            LR L+   LS   IR     ++  G+F    +LNTL+L  N  T I           + 
Sbjct: 86  HLRHLEILQLSRNHIRT----IEI-GAFNGLANLNTLELFDNRLTTIPNGA---FVYLSK 137

Query: 60  LEYLTLDESSLHISLLQSIASLF---PSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMS 116
           L+ L L   +  I  + S    F   PSL+ L +   +    +    F    +L +L+++
Sbjct: 138 LKELWL--RNNPIESIPS--YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 117 FAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQG-LCSLVHLQELRMADNDL 175
              +    +        +  L  L LSG     N    +  G    L+HLQ+L M  + +
Sbjct: 194 MCNLREIPNL-----TPLIKLDELDLSG-----NHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 176 RGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDN 222
           +        N+ SL  ++++ N LT  +       L  +E + L  N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 56/248 (22%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA-SLFPSLKNL 88
             +   L+L  N    I + +     +  +LE L L  +  HI  ++  A +   +L  L
Sbjct: 63  STNTRLLNLHENQIQIIKVNS---FKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNTL 117

Query: 89  SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL--NTSFLQIIGESMPSLKYLSLSGSI 146
            +    +  +  G  F     L+ L +   PI    + +F       +PSL+ L L    
Sbjct: 118 ELFDNRLTTIPNGA-FVYLSKLKELWLRNNPIESIPSYAF-----NRIPSLRRLDLGEL- 170

Query: 147 LGTNS-SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
                 S I +     L +L+ L +A  +LR  +P  L  +  L  LD+S N L+ +I  
Sbjct: 171 ---KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRP 224

Query: 206 SPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 265
                L  ++ L +  +  Q+ I      N   L      +N L       H L  P   
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLT---LLPHDLFTPLHH 280

Query: 266 LNRLLLSS 273
           L R+ L  
Sbjct: 281 LERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 59/292 (20%), Positives = 102/292 (34%), Gaps = 70/292 (23%)

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
           T+ R+L++  NQ+   I  +   HL  +E+L LS NH +  I +      + L      +
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFD 121

Query: 247 NELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306
           N                                                L+ I      P
Sbjct: 122 NR-----------------------------------------------LTTI------P 128

Query: 307 TWLLENNAKLETLFLINDSIGGPFRLPI---HPHRRLRFLDVSNNNFQGHMPVEIGDILP 363
                  +KL+ L+L N+ I     +P    +    LR LD+       ++     + L 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIE---SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN 423
           +L   N++   L   IP+    +  L  LDLS NHL+  I      G ++L  L +  + 
Sbjct: 186 NLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQ 242

Query: 424 L---QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 472
           +   + + F    NL +L  + L  N          +    LE ++L++N  
Sbjct: 243 IQVIERNAFD---NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 50/263 (19%), Positives = 96/263 (36%), Gaps = 36/263 (13%)

Query: 164 HLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH 223
           + + L + +N ++        ++  L IL +S N +  +I       L ++  L L DN 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 224 FQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPK 283
               I        S+LK  +  NN +        S+ +  F                   
Sbjct: 124 LTT-IPNGAFVYLSKLKELWLRNNPI-------ESIPSYAFN------------------ 157

Query: 284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLP-IHPHRRLRF 342
            +     L  +DL  +K          E  + L  L L   ++     +P + P  +L  
Sbjct: 158 RIPS---LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDE 211

Query: 343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE 402
           LD+S N+    +       L  L    +  + +     ++F N++ L  ++L++N+LT  
Sbjct: 212 LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-L 269

Query: 403 IPEYLAVGCVNLNSLALSNNNLQ 425
           +P  L     +L  + L +N   
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 47/257 (18%), Positives = 99/257 (38%), Gaps = 43/257 (16%)

Query: 135 PSLKYLSLSGSILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILD 193
            + + L+L       N  +I+       L HL+ L+++ N +R         + +L  L+
Sbjct: 64  TNTRLLNLHE-----NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 194 VSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISL-EPLFNHSRLKIFYADNNELNA 251
           +  N+LT +I +   V+L+ ++ L L +N  + IP      + +  RL +   +   L +
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL--GELKRL-S 174

Query: 252 EITQS-----HSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSH--IKMNGE 304
            I++       +L   N  +  L            P        L+ +DLS   +     
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR---------EIPNLT-PLIKLDELDLSGNHLSA--- 221

Query: 305 FPTWLLENNAKLETLFLINDSIGGPFRLPIHPH-----RRLRFLDVSNNNFQGHMPVEIG 359
                 +    L+ L++I   I       I  +     + L  +++++NN    +P ++ 
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQV-----IERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275

Query: 360 DILPSLFSFNISTNALH 376
             L  L   ++  N  +
Sbjct: 276 TPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 47/255 (18%), Positives = 93/255 (36%), Gaps = 31/255 (12%)

Query: 75  LQSI-ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL--NTSFLQIIG 131
           L+ +   +  + + L++   ++  +     F   + LE L +S   I      +F     
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAF----- 108

Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
             + +L  L L  + L    + I +     L  L+EL + +N +     +    + SLR 
Sbjct: 109 NGLANLNTLELFDNRL----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 192 LDVS-FNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELN 250
           LD+    +L+  IS      L+++  L L+  + +    +  L    +L       N L 
Sbjct: 165 LDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL- 219

Query: 251 AEITQSHSLTAPNF----QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306
                  ++   +F     L +L +  S     I      +   L  ++L+H  +    P
Sbjct: 220 ------SAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

Query: 307 TWLLENNAKLETLFL 321
             L      LE + L
Sbjct: 272 HDLFTPLHHLERIHL 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.6 bits (246), Expect = 5e-22
 Identities = 80/477 (16%), Positives = 160/477 (33%), Gaps = 55/477 (11%)

Query: 165 LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF 224
                 A  +++ +       + +L  LD   + +T     + +  LT +  LI + N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 225 QIPISLEPLFNHSRLKIFYADNNELNA-EITQSHSLTAPNFQLNRLLLSSSYGDGFIFPK 283
              I+   L  ++ L     D+N+L   ++T    LT  N   N+L    +  D    P 
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL----TKLDVSQNPL 128

Query: 284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL 343
                  L +++ +   +        + +N +L  L    +       L + P  +L  L
Sbjct: 129 -------LTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITK--LDVTPQTQLTTL 175

Query: 344 DVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEI 403
           D S N       +++      L   N  TN +   +         L  LD S+N LT EI
Sbjct: 176 DCSFNKITE---LDVSQ-NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EI 227

Query: 404 PEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLE 463
                     L     S N L     S    L+ L  L       + EI   L+  + L 
Sbjct: 228 DVT---PLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLL-EID--LTHNTQLI 278

Query: 464 GLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 523
                      ++   + + T+L  +      +     ++  Q   L  L +++  ++  
Sbjct: 279 YFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE- 332

Query: 524 LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF 583
            +    S+  +++SL      +       + ++  L     A       +P+ T    + 
Sbjct: 333 -LD--VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTI-TMPKETLTNNSL 386

Query: 584 NESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYIIVIF 640
             +     +   G P+ I      + + +      +NL   D+  +T+T +      
Sbjct: 387 TIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLST-DNPAVTYTFTSENGAI 442

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 79/545 (14%), Positives = 159/545 (29%), Gaps = 118/545 (21%)

Query: 45  DIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGF 104
             +        NF +      +  +      + +     +L +L      +  +    G 
Sbjct: 8   TQSFNDWFPDDNFASEVAAAFEMQATDTISEEQL----ATLTSLDCHNSSITDM---TGI 60

Query: 105 PSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH 164
                L  L  +      + +   +      +L YL+   + L           +  L  
Sbjct: 61  EKLTGLTKLICT------SNNITTLDLSQNTNLTYLACDSNKLTNLD-------VTPLTK 107

Query: 165 LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF 224
           L  L    N L   L   ++    L  L+ + N LT       + H T +  L    N  
Sbjct: 108 LTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKK 160

Query: 225 QIPISLEPLFNHSRLKIFYADNNELNA-EITQSHSLTAPNFQLNRLLLSSSYGDGFIFPK 283
              I+   +   ++L       N++   +++Q+  L   N   N                
Sbjct: 161 ---ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN--------------- 202

Query: 284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL 343
                  +  +DL+               N +L  L   ++ +     + + P  +L + 
Sbjct: 203 -------ITKLDLN--------------QNIQLTFLDCSSNKLT---EIDVTPLTQLTYF 238

Query: 344 DVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEI 403
           D S N                              +  S   +  L  L      L  EI
Sbjct: 239 DCSVNPLT--------------------------ELDVS--TLSKLTTLHCIQTDLL-EI 269

Query: 404 PEYLAVGCVNLNSLALSNNN-LQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSL 462
                     L          ++    +   + T L  L  +      E+   LS+   L
Sbjct: 270 D---LTHNTQLIYFQAEGCRKIKELDVT---HNTQLYLLDCQAAGIT-ELD--LSQNPKL 320

Query: 463 EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 522
             LYLNN  L+ ++   + + T+L+ +   N H++        ++  L     ++     
Sbjct: 321 VYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTI- 374

Query: 523 RLIPSTFSNLKQIESLDLSYNKLNG-KMPHQLVELKTLEVFS--VAYNNLSGEIPEWTAQ 579
            +   T +N     ++        G  M  +  +    +  +  + + NLS + P  T  
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYT 434

Query: 580 FATFN 584
           F + N
Sbjct: 435 FTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 77/473 (16%), Positives = 134/473 (28%), Gaps = 116/473 (24%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
           L  L S       I D    +  +     L  L  + NN T +      +L   TNL YL
Sbjct: 41  LATLTSLDCHNSSITD----MTGIEKLTGLTKLICTSNNITTL------DLSQNTNLTYL 90

Query: 64  TLDESSL-HISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL 122
             D + L ++ +          L  L+    +    L          L +L+ +      
Sbjct: 91  ACDSNKLTNLDVTP-----LTKLTYLNCDTNK----LTKLDVSQNPLLTYLNCA------ 135

Query: 123 NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWC 182
             +  +I       L  L          + +I    +     L  L  + N +   L   
Sbjct: 136 RNTLTEIDVSHNTQLTELDCH------LNKKITKLDVTPQTQLTTLDCSFNKIT-ELD-- 186

Query: 183 LANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISLEPLFNHSRLKI 241
           ++    L  L+   N +T       L     +  L  S N    I ++       ++L  
Sbjct: 187 VSQNKLLNRLNCDTNNIT----KLDLNQNIQLTFLDCSSNKLTEIDVT-----PLTQLTY 237

Query: 242 FYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKM 301
           F    N L  E+  S        +L  L                    DL  +DL+    
Sbjct: 238 FDCSVNPLT-ELDVST-----LSKLTTLHCIQ---------------TDLLEIDLT---- 272

Query: 302 NGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI 361
                     +N +L                       ++ LDV++N             
Sbjct: 273 ----------HNTQLIYFQAEGCRK-------------IKELDVTHN------------- 296

Query: 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN 421
              L+  +     +   +         L  L L+N  LT E+          L SL+  N
Sbjct: 297 -TQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD---VSHNTKLKSLSCVN 348

Query: 422 NNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG 474
            ++Q   FS    +  L        + +    ++L+  S    +  +     G
Sbjct: 349 AHIQD--FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 37/247 (14%), Positives = 74/247 (29%), Gaps = 39/247 (15%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDE---SSLHISLLQSIASL- 81
            +     L  LD S N  T+I      ++   T L Y        + L +S L  + +L 
Sbjct: 207 DLNQNIQLTFLDCSSNKLTEI------DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH 260

Query: 82  ----------FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIG 131
                           L     E    ++         L  L              ++  
Sbjct: 261 CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ------AAGITELDL 314

Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
              P L YL L+           LD  +     L+ L   +  ++      +  + +L  
Sbjct: 315 SQNPKLVYLYLNN-----TELTELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNN 365

Query: 192 LDVSFNQLT----GSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNN 247
              +  Q       +++++ L    S ++L    N   I      +++ +   I + + +
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLS 425

Query: 248 ELNAEIT 254
             N  +T
Sbjct: 426 TDNPAVT 432

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 5e-22
 Identities = 69/367 (18%), Positives = 130/367 (35%), Gaps = 38/367 (10%)

Query: 133 SMPSLKYLSLSGSILGTNSSRILDQGLC-SLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
            +  L++L +     G     ++       L  L  L++  N            + +L +
Sbjct: 52  RLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107

Query: 192 LDVSFNQLTGS-ISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNH-SRLKIFYADNNEL 249
           L ++   L G+ +S +    LTS+EML+L DN+ +  I     F +  R  +     N++
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKV 166

Query: 250 NAE------ITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSH--IKM 301
            +         Q    T        L   + Y  G+      +    +  +DLS    K 
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 302 NGEFPTWLLENNAKLETLFLINDSIGGPFRLPIH------------PHRRLRFLDVSNNN 349
           +     +      K+++L L N    G      +                ++  D+S + 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 350 FQGHMPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMKFLQILDLSNNHLTGEIPEYLA 408
               +   +      L    ++ N ++  I   +F  +  L  L+LS N L   I   + 
Sbjct: 287 IF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMF 343

Query: 409 VGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGL 465
                L  L LS N+++      F     L NLK L L+ N+          + +SL+ +
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFL---GLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400

Query: 466 YLNNNSL 472
           +L+ N  
Sbjct: 401 WLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 82/486 (16%), Positives = 154/486 (31%), Gaps = 111/486 (22%)

Query: 21  SKLLQSMGSFP-SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA 79
           ++ L  +   P  +N +DLS N+  ++            +L++L +++ +  + +     
Sbjct: 19  NRGLHQVPELPAHVNYVDLSLNSIAEL---NETSFSRLQDLQFLKVEQQTPGLVI---RN 72

Query: 80  SLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKY 139
           + F  L +                                                 L  
Sbjct: 73  NTFRGLSS-------------------------------------------------LII 83

Query: 140 LSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSL--PWCLANMTSLRILDVSFN 197
           L L  +      +   +     L +L+ L +   +L G++        +TSL +L +  N
Sbjct: 84  LKLDYNQFLQLETGAFN----GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 198 QLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISLEPLFNHSRLKIFYADNNELNAEITQS 256
            +     +S  +++    +L L+ N  + I       F      +    +  L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ------ 193

Query: 257 HSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSH--IKMNGEFPTWLLENNA 314
                    +N   L                   +  +DLS    K +     +      
Sbjct: 194 --------DMNEYWLGWEKCGNPF------KNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNA 374
           K+++L L N                  F D  N  F+G            + + ++S + 
Sbjct: 240 KIQSLILSN------SYNMGSSFGHTNFKDPDNFTFKGLEA-------SGVKTCDLSKSK 286

Query: 375 LHGSIPS-SFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFS 430
           +  ++    F +   L+ L L+ N +  +I +    G  +L  L LS N L      MF 
Sbjct: 287 IF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344

Query: 431 RNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQY 488
              NL  L+ L L  N     +  QS     +L+ L L+ N L   +P      LT LQ 
Sbjct: 345 ---NLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQK 399

Query: 489 IIMPNN 494
           I +  N
Sbjct: 400 IWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 74/409 (18%), Positives = 138/409 (33%), Gaps = 61/409 (14%)

Query: 163 VHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDN 222
            H+  + ++ N +        + +  L+ L V        I ++    L+S+ +L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 223 HFQIPISLEP-LFNH-SRLKIFYADNNELNAEITQSHSLTAPNF----QLNRLLLS---- 272
            F     LE   FN  + L++       L         L+   F     L  L+L     
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQCNL-----DGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 273 SSYGDGFIFPKFLYHQHDLEFVDLSH-----------IKMNGEFPTWLLENNAKLETL-- 319
                   F     +      +DL+            +   G+  T L  ++  L+ +  
Sbjct: 142 KKIQPASFF----LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 320 -FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS 378
            +L  +  G PF+        +  LD+S N F+  M     D +      ++  +  +  
Sbjct: 198 YWLGWEKCGNPFKN-----TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 379 IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNL 435
             S           D  N    G       +    + +  LS + +      +FS   + 
Sbjct: 253 GSSFGHT----NFKDPDNFTFKG-------LEASGVKTCDLSKSKIFALLKSVFS---HF 298

Query: 436 TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495
           T+L+ L L  N        +    + L  L L+ N L     R   NL +L+ + +  NH
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358

Query: 496 LEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543
           +   +  + F  L  L+ L +  N +   +    F  L  ++ + L  N
Sbjct: 359 IRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 20/219 (9%)

Query: 357 EIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS 416
           ++ ++   +   ++S N++     +SF  ++ LQ L +        I      G  +L  
Sbjct: 24  QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83

Query: 417 LALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEI--PQSLSKCSSLEGLYLNNNS 471
           L L  N         F+    L NL+ L L      G +         +SLE L L +N+
Sbjct: 84  LKLDYNQFLQLETGAFN---GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 472 LSGKIPRWL-GNLTRLQYIIMPNNHLE----------GPIPVEFCQLDLLQILDISDNNI 520
           +    P     N+ R   + +  N ++                  +L  + + D+++  +
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 521 SGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL 559
                         I +LDLS N     M  +  +    
Sbjct: 201 GW-EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 84/425 (19%), Positives = 135/425 (31%), Gaps = 103/425 (24%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLF---PSLKN 87
            SL  L L YN F  +        +   NLE LTL + +L  ++L    + F    SL+ 
Sbjct: 79  SSLIILKLDYNQFLQLETGA---FNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEM 133

Query: 88  LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL 147
           L +    +  +     F + +    L ++F  +           +S+     L+  G   
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-----------KSICEEDLLNFQGKHF 182

Query: 148 GTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSP 207
                         L  +    M +  L           TS+  LD+S N    S++   
Sbjct: 183 TLLR----------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 208 LVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLN 267
              +   ++  L  ++     S     N                           NF   
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP----------------------DNFTFK 270

Query: 268 RLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG 327
            L  S                  ++  DLS  K+       +  +   LE L L      
Sbjct: 271 GLEASG-----------------VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL------ 306

Query: 328 GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS-SFGNM 386
                             + N     +       L  L   N+S N L GSI S  F N+
Sbjct: 307 ------------------AQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENL 346

Query: 387 KFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLL 443
             L++LDLS NH+   + +   +G  NL  LAL  N L+     +F     LT+L+ + L
Sbjct: 347 DKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWL 402

Query: 444 EGNRF 448
             N +
Sbjct: 403 HTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 28/209 (13%)

Query: 32  SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA------SLFPSL 85
           S+ TLDLS N F +       +    T ++ L L  S    S              F  L
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 86  KNLSISYCEVNG----VLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGE----SMPSL 137
           +   +  C+++      L    F  F  LE L        L  + +  I +     +  L
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT-------LAQNEINKIDDNAFWGLTHL 325

Query: 138 KYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL-ANMTSLRILDVSF 196
             L+LS + LG+  SR+ +    +L  L+ L ++ N +R +L       + +L+ L +  
Sbjct: 326 LKLNLSQNFLGSIDSRMFE----NLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDT 380

Query: 197 NQLTGSISSSPLVHLTSIEMLILSDNHFQ 225
           NQL  S+       LTS++ + L  N + 
Sbjct: 381 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 26/268 (9%)

Query: 289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN 348
             L  + L + K++ +          KL+ L++  + +     +P +    L  L + +N
Sbjct: 78  QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV---EIPPNLPSSLVELRIHDN 133

Query: 349 NFQGHMPVEIGDILPSLFSFNISTNALHGSI--PSSFGNMKFLQILDLSNNHLTGEIPEY 406
             +  +P  +   L ++    +  N L  S   P +F  +K L  L +S   LT  IP+ 
Sbjct: 134 RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT-GIPKD 190

Query: 407 LAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLE 463
           L      LN L L +N +Q             + L  L L  N+       SLS   +L 
Sbjct: 191 LPE---TLNELHLDHNKIQAIELEDLL---RYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244

Query: 464 GLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL------LQILDISD 517
            L+L+NN LS ++P  L +L  LQ + +  N++      +FC +           + + +
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 518 NNISGRLI-PSTFSNLKQIESLDLSYNK 544
           N +    + P+TF  +    ++     K
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 20/241 (8%)

Query: 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL 399
           LR +  S+   +  +P    +I P     ++  N +       F  ++ L  L L NN +
Sbjct: 35  LRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 400 TGEIPEYLAVGCVNLNSLALSNNNL---QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSL 456
           + +I E        L  L +S N+L     ++ S      +L  L +  NR         
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVF 143

Query: 457 SKCSSLEGLYLNNNSL-SGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 515
           S   ++  + +  N L +        +  +L Y+ +    L G IP +    + L  L +
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHL 200

Query: 516 SDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
             N I   +         ++  L L +N++       L  L TL    +  N LS  +P 
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 576 W 576
            
Sbjct: 259 G 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 21/193 (10%)

Query: 388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN---LQGHMFSRNFNLTNLKWLLLE 444
            L+++  S+  L   +P+ ++     L+   L NN+   L+   F     L +L  L+L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLLD---LQNNDISELRKDDFK---GLQHLYALVLV 86

Query: 445 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE- 503
            N+      ++ S    L+ LY++ N L  +IP      + L  + + +N +   +P   
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRK-VPKGV 142

Query: 504 FCQLDLLQILDISDNNISGRLIPS-TFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVF 562
           F  L  +  +++  N +         F  LK +  L +S  KL   +P  L   +TL   
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT-GIPKDL--PETLNEL 198

Query: 563 SVAYNNLSGEIPE 575
            + +N +   I  
Sbjct: 199 HLDHNKIQ-AIEL 210

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 51/268 (19%), Positives = 89/268 (33%), Gaps = 41/268 (15%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDES-----------------SLHI 72
            P    LDL  N+ +++      +     +L  L L  +                  L+I
Sbjct: 53  SPDTTLLDLQNNDISEL---RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 73  S--LLQSI-ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQI 129
           S   L  I  +L  SL  L I    +  V +G  F   +++  + M   P+    S  + 
Sbjct: 110 SKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGV-FSGLRNMNCIEMGGNPL--ENSGFEP 166

Query: 130 IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSL 189
                  L YL +S           + + L     L EL +  N ++      L   + L
Sbjct: 167 GAFDGLKLNYLRISE-----AKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 190 RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISLEPLFNHSRLKIFYADNN- 247
             L +  NQ+   I +  L  L ++  L L +N    +P     L +   L++ Y   N 
Sbjct: 220 YRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVP---AGLPDLKLLQVVYLHTNN 275

Query: 248 --ELNAEITQSHSLTAPNFQLNRLLLSS 273
             ++                 N + L +
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 38/243 (15%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSI 90
             L  L L  N  + I             L+ L +  S  H+  +    +L  SL  L I
Sbjct: 78  QHLYALVLVNNKISKIHEKA---FSPLRKLQKLYI--SKNHLVEIP--PNLPSSLVELRI 130

Query: 91  SYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA------------------LNTSFLQIIGE 132
               +  V +G  F   +++  + M   P+                   ++ + L  I +
Sbjct: 131 HDNRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK 189

Query: 133 SMP-SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
            +P +L  L L  + +      I  + L     L  L +  N +R      L+ + +LR 
Sbjct: 190 DLPETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 192 LDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ-IPI----SLEPLFNHSRLKIFYADN 246
           L +  N+L+  + +  L  L  ++++ L  N+   + +     +      +        N
Sbjct: 246 LHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 247 NEL 249
           N +
Sbjct: 304 NPV 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 89.2 bits (221), Expect = 1e-19
 Identities = 55/276 (19%), Positives = 88/276 (31%), Gaps = 38/276 (13%)

Query: 309 LLENNAKLETLFLINDSIGGPFRLPIH-PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS 367
           L      LE L    D+     +         L+ L V        +      +L     
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL----- 92

Query: 368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCV-NLNSLALSNNNLQG 426
                             +  LQ L L N  +TG  P  L      +LN L L N +   
Sbjct: 93  -----------------GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 427 HMFS----RNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW--- 479
                   + +    LK L +     +    + +    +L  L L++N   G+       
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 480 -LGNLTRLQYIIMPNNHLE---GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQI 535
                  LQ + + N  +E   G           LQ LD+S N++       +     Q+
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 536 ESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571
            SL+LS+  L  ++P  L     L V  ++YN L  
Sbjct: 256 NSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 41/232 (17%), Positives = 71/232 (30%), Gaps = 11/232 (4%)

Query: 1   YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNL 60
           YGG R L+          D  +    + S  SL  L +         +     +   + L
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 61  EYLTLDESSLHISLLQSIASL-FPSLKNLSISYCEVNGVLRGQG---FPSFKSLEHLHMS 116
           + LTL+   +  +    +     P L  L++                      L+ L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 117 FAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLR 176
            A      +F        P+L  L LS +        I          LQ L + +  + 
Sbjct: 158 QAHS---LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 177 ---GSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ 225
              G      A    L+ LD+S N L  +  +      + +  L LS    +
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 5e-16
 Identities = 57/306 (18%), Positives = 86/306 (28%), Gaps = 21/306 (6%)

Query: 182 CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKI 241
           C  N +  +    S     G+          S+E L+   +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 242 FYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQH-DLEFVDLSHIK 300
                  + + I            L  L L +    G   P  L     DL  ++L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 301 MNG------EFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHM 354
                    E   WL      L+ L +            +     L  LD+S+N   G  
Sbjct: 133 WATRDAWLAELQQWLKPG---LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 355 PVE---IGDILPSLFSFNISTNALH---GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA 408
            +         P+L    +    +    G   +       LQ LDLS+N L         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 409 VGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN 468
                LNSL LS   L+  +         L  L L  NR     P    +   +  L L 
Sbjct: 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLK 304

Query: 469 NNSLSG 474
            N    
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 40/224 (17%), Positives = 74/224 (33%), Gaps = 17/224 (7%)

Query: 368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH 427
           ++ + N L  +    +G  + L+ L    +           +  ++L  L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 428 MFS---RNFNLTNLKWLLLEGNRFVGEIPQSLSKCS--SLEGLYLNNNSLSGKIPRWLGN 482
           +     R   ++ L+ L LE     G  P  L + +   L  L L N S +     WL  
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 483 L-----TRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR------LIPSTFSN 531
           L       L+ + +   H       +      L  LD+SDN   G       L P  F  
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 532 LKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575
           L+ +   +      +G           L+   +++N+L      
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 47/245 (19%), Positives = 79/245 (32%), Gaps = 30/245 (12%)

Query: 6   KLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTL 65
            +++  +    +    ++L        L  L L     T  A     E     +L  L L
Sbjct: 74  TVRAARIPSRILFGALRVL----GISGLQELTLENLEVTGTAPPPLLEATG-PDLNILNL 128

Query: 66  ---DESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL 122
                ++    L +    L P LK LSI+          Q    F +L  L +S  P   
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELG 187

Query: 123 NTSFL-QIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLP- 180
               +  +     P+L+ L+L  + +    S +      + V LQ L ++ N LR +   
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 181 WCLANMTSLRILDVSFNQLTG-----------------SISSSPLV-HLTSIEMLILSDN 222
                 + L  L++SF  L                    +  +P    L  +  L L  N
Sbjct: 247 PSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGN 306

Query: 223 HFQIP 227
            F   
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 21/206 (10%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSF--PSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
              L    L  V        L  +  +  P L  L ++  +  +    + +++  F  L 
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF---SCEQVRVFPALS 176

Query: 62  YLTLDE---SSLHISLLQSIASLFPSLKNLSISYCEVNGV--LRGQGFPSFKSLEHLHMS 116
            L L +         +       FP+L+ L++    +     +      +   L+ L +S
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 117 FAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLR 176
               +L  +      +    L  L+LS + L                 L  L ++ N L 
Sbjct: 237 HN--SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-------GLPAKLSVLDLSYNRLD 287

Query: 177 GSLPWCLANMTSLRILDVSFNQLTGS 202
              P     +  +  L +  N    S
Sbjct: 288 -RNPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 9/154 (5%)

Query: 434 NLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRW---LGNLTRLQYI 489
              +L++LL   +          + K  SL+ L +    +  +I      +  ++ LQ +
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 490 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQ-----IESLDLSYNK 544
            + N  + G  P    +     +  ++  N+S     +  + L+Q     ++ L ++   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 545 LNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTA 578
                  Q+     L    ++ N   GE    +A
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 43/251 (17%), Positives = 103/251 (41%), Gaps = 21/251 (8%)

Query: 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMKFLQILDLSNNH 398
           ++ LD+SNN    ++         +L +  +++N ++ +I   SF ++  L+ LDLS N+
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 399 LTGEIPEYLAVGCVNLNSLALSNNNLQ----GHMFSRNFNLTNLKWLLLEGNRFVGEIP- 453
           L+  +         +L  L L  N  +      +FS   +LT L+ L +       +I  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQR 167

Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL 513
           +  +  + LE L ++ + L    P+ L ++  + ++I+        + +       ++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 514 DISDNNISG-------RLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAY 566
           ++ D ++             ++        ++ ++   L  ++   L ++  L     + 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 567 NNLSGEIPEWT 577
           N L   +P+  
Sbjct: 287 NQLKS-VPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.2 bits (211), Expect = 5e-18
 Identities = 45/204 (22%), Positives = 77/204 (37%), Gaps = 10/204 (4%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
            +  ++ S ++S N +     S       LQ L L++N +   I E       +L  L L
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107

Query: 420 SNNNLQG---HMFSRNFNLTNLKWLLLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLSGK 475
           S N L       F     L++L +L L GN +      SL S  + L+ L + N     K
Sbjct: 108 SYNYLSNLSSSWFK---PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 476 IP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQ 534
           I  +    LT L+ + +  + L+   P     +  +  L +        L+         
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223

Query: 535 IESLDLSYNKLNGKMPHQLVELKT 558
           +E L+L    L+     +L   +T
Sbjct: 224 VECLELRDTDLDTFHFSELSTGET 247

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMKFLQILDLSN 396
             L  LD+S N    ++       L SL   N+  N       +S F ++  LQIL + N
Sbjct: 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 397 NHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
                +I      G   L  L +  ++LQ           ++ N+  L+L   + +  + 
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK---SIQNVSHLILHMKQHILLLE 215

Query: 454 QSLSKCSSLEGLYLNNN--------SLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 505
             +   SS+E L L +          LS      L      + + + +  L   +     
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN 274

Query: 506 QLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
           Q+  L  L+ S N +   +    F  L  ++ + L  N  +
Sbjct: 275 QISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 12/199 (6%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSI 90
            SL  L+L  N +  +  T+     + T L+ L +        + +   +    L+ L I
Sbjct: 124 SSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 91  SYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTN 150
              ++          S +++ HL +           L+I  +   S++ L L  + L T 
Sbjct: 182 DASDLQSYEPK-SLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 151 SSRILDQG----LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSS 206
               L  G    L      + +++ D  L   +   L  ++ L  L+ S NQL  S+   
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDG 295

Query: 207 PLVHLTSIEMLILSDNHFQ 225
               LTS++ + L  N + 
Sbjct: 296 IFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 30/257 (11%)

Query: 28  GSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN 87
           G   ++ +LDLS N  T I   +  +L    NL+ L L  +   I+ ++     F SL +
Sbjct: 49  GLTEAVKSLDLSNNRITYI---SNSDLQRCVNLQALVLTSN--GINTIE--EDSFSSLGS 101

Query: 88  LSISYCEVN--GVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGS 145
           L       N    L    F    SL  L+       L  +  + +GE+        L   
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLN-------LLGNPYKTLGETSLFSHLTKLQIL 154

Query: 146 ILGTNS--SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSI 203
            +G     ++I  +    L  L+EL +  +DL+   P  L ++ ++  L +   Q    +
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LL 213

Query: 204 SSSPLVHLTSIEMLILSDNHFQI-------PISLEPLFNHSRLKIFYADNNELNAEITQS 256
               +   +S+E L L D                  L      +     +  L   +   
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 257 HSLTAPNFQLNRLLLSS 273
           + ++     L  L  S 
Sbjct: 274 NQIS----GLLELEFSR 286

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 40/199 (20%), Positives = 65/199 (32%), Gaps = 13/199 (6%)

Query: 3   GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLD-LSYNNFTDIAITTTQELHNFTNLE 61
            L  L    L G   +     L     F  L  L  L   N         ++    T LE
Sbjct: 122 PLSSLTFLNLLGNPYKT----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 62  YLTLDESSLHISLLQSI-ASLFPSLKNLSISYCEVNG--VLRGQGFPSFKSLEHLHMSFA 118
            L +D S L     QS       S++N+S     +    +L         S+E L +   
Sbjct: 178 ELEIDASDL-----QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 119 PIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGS 178
            +          GE+   +K  +     +   S   + + L  +  L EL  + N L+  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292

Query: 179 LPWCLANMTSLRILDVSFN 197
                  +TSL+ + +  N
Sbjct: 293 PDGIFDRLTSLQKIWLHTN 311

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.6 bits (215), Expect = 4e-18
 Identities = 70/415 (16%), Positives = 130/415 (31%), Gaps = 55/415 (13%)

Query: 108 KSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQE 167
             ++ L +    +  + +    +   +   + + L    L     + +   L     L E
Sbjct: 3   LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 168 LRMADNDLRGSLPWCLANM-----TSLRILDVSFNQLT----GSISSSPLVHLTSIEMLI 218
           L +  N+L      C+          ++ L +    LT    G +SS+ L  L +++ L 
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 219 LSDNHFQIP----ISLEPLFNHSRLKIFYADNNELNAE--------ITQSHSLTAPNFQL 266
           LSDN         +    L    RL+    +   L+A         +             
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 267 NRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWL---LENNAKLETLFLIN 323
           N +   +  G   +          LE + L    +  +    L   + + A L  L L +
Sbjct: 180 NDI---NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 324 DSIGGP-----FRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDIL---PSLFSFNISTNAL 375
           + +G           +HP  RLR L +           ++  +L    SL   +++ N L
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 376 HGSIPSSFGNM-----KFLQILDLSNNHLTGEIPEYLAVG---CVNLNSLALSNNNLQG- 426
                             L+ L + +   T     + +        L  L +SNN L+  
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 427 --HMFSR--NFNLTNLKWLLLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSLS 473
                 +      + L+ L L            +  +L    SL  L L+NN L 
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 8e-14
 Identities = 85/459 (18%), Positives = 158/459 (34%), Gaps = 73/459 (15%)

Query: 6   KLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL--HNFTNLEYL 63
           +L   GL+    +D S  L+     P+L  L+L  N   D+ +    +        ++ L
Sbjct: 34  RLDDCGLTEARCKDISSALRVN---PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90

Query: 64  TLDESSLHISLLQSIASLF---PSLKNLSISYCE-----VNGVLRGQGFPSFKSLEHLHM 115
           +L    L  +    ++S     P+L+ L +S        +  +  G   P  + LE L +
Sbjct: 91  SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR-LEKLQL 149

Query: 116 SFAPIALNTSFLQIIGE---SMPSLKYLSLSGSILGTNSSRILDQGL-CSLVHLQELRMA 171
            +   +L+ +  + +     + P  K L++S + +     R+L QGL  S   L+ L++ 
Sbjct: 150 EY--CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207

Query: 172 DNDLR----GSLPWCLANMTSLRILDVSFNQLTGS----ISSSPLVHLTSIEMLILSDNH 223
              +       L   +A+  SLR L +  N+L       +    L   + +  L + +  
Sbjct: 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267

Query: 224 FQIPISLEPLF----NHSRLKIFYADNNELNAEITQ--SHSLTAPNFQLNRLLLSSSY-- 275
                    L         LK      NEL  E  +    +L  P  QL  L + S    
Sbjct: 268 IT-AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

Query: 276 GDGFI-FPKFLYHQHDLEFVDLSHIKMNGE----FPTWLLENNAKLETLFLINDSIG--- 327
                 F   L     L  + +S+ ++           L +  + L  L+L +  +    
Sbjct: 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386

Query: 328 -GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 386
                  +  +  LR LD+SNN         +GD        ++                
Sbjct: 387 CSSLAATLLANHSLRELDLSNNC--------LGDAGILQLVESVRQPGCL---------- 428

Query: 387 KFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ 425
             L+ L L + + + E           L +L     +L+
Sbjct: 429 --LEQLVLYDIYWSEE-------MEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 47/231 (20%), Positives = 75/231 (32%), Gaps = 58/231 (25%)

Query: 5   RKLKSFGLSGVGIRD--GSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEY 62
            +L++  +   GI       L + + +  SL  L L+ N   D                 
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-------------- 301

Query: 63  LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL 122
                      L +++      L++L +  C            +     H          
Sbjct: 302 ---------RLLCETLLEPGCQLESLWVKSCSF----------TAACCSHF--------- 333

Query: 123 NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCS-LVHLQELRMADNDLR----G 177
            +S L         L  L +S + L     R L QGL      L+ L +AD D+      
Sbjct: 334 -SSVLA----QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388

Query: 178 SLPWCLANMTSLRILDVSFNQLTGS----ISSSPLVHLTSIEMLILSDNHF 224
           SL   L    SLR LD+S N L  +    +  S       +E L+L D ++
Sbjct: 389 SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.3 bits (213), Expect = 9e-18
 Identities = 45/284 (15%), Positives = 92/284 (32%), Gaps = 34/284 (11%)

Query: 3   GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEY 62
              +     L    + D            S++ +  + ++   +     Q +    N+  
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSV-----QGIQYLPNVTK 69

Query: 63  LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL 122
           L L  +   ++ ++ + +L  +L  L +   ++  +         K L+ L +    I+ 
Sbjct: 70  LFL--NGNKLTDIKPLTNL-KNLGWLFLDENKIKDL---SSLKDLKKLKSLSLEHNGISD 123

Query: 123 NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILD-QGLCSLVHLQELRMADNDLRGSLPW 181
                      +P L+ L L       N  +I D   L  L  L  L + DN +   +  
Sbjct: 124 INGL-----VHLPQLESLYLGN-----N--KITDITVLSRLTKLDTLSLEDNQIS-DIV- 169

Query: 182 CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKI 241
            LA +T L+ L +S N ++       L  L ++++L L          +    N      
Sbjct: 170 PLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLN-KPINHQSNLVVPNT 225

Query: 242 FYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFL 285
               +  L      S         +   L   +    FIF + +
Sbjct: 226 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.3 bits (213), Expect = 1e-17
 Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 19/221 (8%)

Query: 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL 399
               ++   +          + L S+     + + +  S+      +  +  L L+ N L
Sbjct: 23  TIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 77

Query: 400 TGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKC 459
           T +I + L     NL  L L  N ++    S   +L  LK L LE N  + +I   L   
Sbjct: 78  T-DI-KPLT-NLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNG-ISDI-NGLVHL 130

Query: 460 SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 519
             LE LYL NN ++      L  LT+L  + + +N +   +P     L  LQ L +S N+
Sbjct: 131 PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186

Query: 520 ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLE 560
           IS        + LK ++ L+L   +   K  +    L    
Sbjct: 187 IS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 53/306 (17%), Positives = 93/306 (30%), Gaps = 46/306 (15%)

Query: 33  LNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISY 92
           +            I          F       L + S  ++   +   L  S+  +  + 
Sbjct: 1   MGETITVSTPIKQI-----FPDDAFAETIKDNLKKKS--VTDAVTQNEL-NSIDQIIANN 52

Query: 93  CEVNGVLRGQGFPSFKSLEHLHMSFAPIA-------------LNTSFLQIIG----ESMP 135
            ++  V   QG     ++  L ++   +              L     +I      + + 
Sbjct: 53  SDIKSV---QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLK 109

Query: 136 SLKYLSLSGSILGTNSSRILD-QGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV 194
            LK LSL       N   I D  GL  L  L+ L + +N +       L+ +T L  L +
Sbjct: 110 KLKSLSLEH-----N--GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSL 160

Query: 195 SFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEIT 254
             NQ++      PL  LT ++ L LS NH      L  L     L +    + E      
Sbjct: 161 EDNQIS---DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQEC-LNKP 213

Query: 255 QSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNA 314
            +H          +    S      I     Y + ++++  L        F  +      
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW-HLPEFTNEVSFIFYQPVTIG 272

Query: 315 KLETLF 320
           K +  F
Sbjct: 273 KAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 8e-13
 Identities = 52/355 (14%), Positives = 106/355 (29%), Gaps = 79/355 (22%)

Query: 165 LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF 224
           + E       ++   P            ++    +T    +     L SI+ +I +++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 55

Query: 225 QIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKF 284
           +   S++ +     +   + + N+L  +I    +L      L  L L  +          
Sbjct: 56  K---SVQGIQYLPNVTKLFLNGNKLT-DIKPLTNLK----NLGWLFLDEN---------- 97

Query: 285 LYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRL-PIHPHRRLRFL 343
                      +  +          L++  KL++L L ++ I     +  +    +L  L
Sbjct: 98  ----------KIKDLSS--------LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESL 136

Query: 344 DVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEI 403
            + NN         I DI                   +    +  L  L L +N ++ +I
Sbjct: 137 YLGNNK--------ITDI-------------------TVLSRLTKLDTLSLEDNQIS-DI 168

Query: 404 PEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLE 463
                 G   L +L LS N++          L NL  L L     + +     S      
Sbjct: 169 VPL--AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 464 GLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518
            +   + SL    P  + +    +   +  +  E    V F     + I      
Sbjct: 225 TVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 2e-11
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 26/227 (11%)

Query: 310 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI-----LPS 364
           ++    +  LFL  + +      P+   + L +L +  N         I D+     L  
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENK--------IKDLSSLKDLKK 110

Query: 365 LFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL 424
           L S ++  N +  S  +   ++  L+ L L NN +T      L+     L++L+L +N +
Sbjct: 111 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 165

Query: 425 QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 484
                     LT L+ L L  N  + ++ ++L+   +L+ L L +     K      NL 
Sbjct: 166 SD--IVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSN 531
               +   +  L  P  +        +  ++  +        S    
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDG--DYEKPNVKWHLPEFTNEVSFIFY 266

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 382 SFGNMKFLQILDLSNNHLTGEIP-EYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKW 440
           +   M  L  + L+N ++T     EY      N+  L ++N +     ++    L+NL+ 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEYA----HNIKDLTINNIHATN--YNPISGLSNLER 92

Query: 441 LLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI 500
           L + G     +   +LS  +SL  L +++++    I   +  L ++  I +  N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 501 PVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547
                 L  L+ L+I  + +          +  ++  L      + G
Sbjct: 153 M-PLKTLPELKSLNIQFDGVHD---YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 25/171 (14%), Positives = 63/171 (36%), Gaps = 17/171 (9%)

Query: 82  FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
             SL  ++++   V  +    G     +++ L ++      N + +      + +L+ L 
Sbjct: 43  MNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHAT-NYNPI----SGLSNLERLR 94

Query: 142 LSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTG 201
           + G     + +      L  L  L  L ++ +    S+   +  +  +  +D+S+N    
Sbjct: 95  IMG----KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 202 SISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAE 252
            I   PL  L  ++ L +  +          + +  +L   YA +  +  +
Sbjct: 151 DI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 44/198 (22%)

Query: 26  SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
           +     SL  + L+  N TD+       +    N++ LT+  +++H +    I+ L  +L
Sbjct: 39  TEAQMNSLTYITLANINVTDL-----TGIEYAHNIKDLTI--NNIHATNYNPISGL-SNL 90

Query: 86  KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGS 145
           + L I   +V             +L  L                      SL  L +S  
Sbjct: 91  ERLRIMGKDVTSD-------KIPNLSGL---------------------TSLTLLDIS-- 120

Query: 146 ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
              +     +   + +L  +  + ++ N     +   L  +  L+ L++ F+ +      
Sbjct: 121 --HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH---DY 174

Query: 206 SPLVHLTSIEMLILSDNH 223
             +     +  L      
Sbjct: 175 RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 12/164 (7%)

Query: 410 GCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN 469
           G      L  S +N+       N   +  K  L            + ++ +SL  + L N
Sbjct: 1   GAAEQTGLKASQDNV-------NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLAN 53

Query: 470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF 529
            +++      +     ++ + + N H     P+    L  L+ L I   +++   IP+  
Sbjct: 54  INVTDLTG--IEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPN-L 108

Query: 530 SNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI 573
           S L  +  LD+S++  +  +  ++  L  +    ++YN    +I
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 17/140 (12%)

Query: 340 LRFLDVSNNNFQGHMPVEIGDI-----LPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394
           ++ L ++N +          +      L +L    I    +      +   +  L +LD+
Sbjct: 68  IKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ 454
           S++     I   +      +NS+ LS N     +      L  LK L ++ +        
Sbjct: 120 SHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG- 176

Query: 455 SLSKCSSLEGLYLNNNSLSG 474
            +     L  LY  + ++ G
Sbjct: 177 -IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 45/200 (22%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
             +  L    L+ + + D    L  +    ++  L ++  + T+        +   +NLE
Sbjct: 41  AQMNSLTYITLANINVTD----LTGIEYAHNIKDLTINNIHATNYN-----PISGLSNLE 91

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            L +    +    + +++ L  SL  L IS+   +             +  L        
Sbjct: 92  RLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDS-------ILTKINTL-------- 135

Query: 122 LNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW 181
                        P +  + LS +   T+        L +L  L+ L +  + +      
Sbjct: 136 -------------PKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQFDGVHDYRG- 176

Query: 182 CLANMTSLRILDVSFNQLTG 201
            + +   L  L      + G
Sbjct: 177 -IEDFPKLNQLYAFSQTIGG 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 44/250 (17%), Positives = 91/250 (36%), Gaps = 21/250 (8%)

Query: 310 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369
               A    +     ++     +       +  L            +E    L +L    
Sbjct: 15  DPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLE 69

Query: 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF 429
           +  N +  +  +   N+  +  L+LS N L       +A G  ++ +L L++  +     
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPLK--NVSAIA-GLQSIKTLDLTSTQITD--V 122

Query: 430 SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489
           +    L+NL+ L L+ N+ +  I   L+  ++L+ L + N  +S   P  L NL++L  +
Sbjct: 123 TPLAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 490 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM 549
              +N +    P     L  L  + + +N IS     S  +N   +  + L+   +  + 
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTNQTITNQP 233

Query: 550 PHQLVELKTL 559
                 L   
Sbjct: 234 VFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 62/283 (21%), Positives = 115/283 (40%), Gaps = 38/283 (13%)

Query: 2   GGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLE 61
             L  + +    G G+      ++ +    +L  L+L  N  TD+       L N T + 
Sbjct: 38  ADLDGITTLSAFGTGVTT----IEGVQYLNNLIGLELKDNQITDL-----APLKNLTKIT 88

Query: 62  YLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIA 121
            L L  S   +  + +IA L  S+K L ++  ++  V          +L+ L++    I 
Sbjct: 89  ELEL--SGNPLKNVSAIAGL-QSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQIT 142

Query: 122 LNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW 181
            N S L      + +L+YLS+            L   L +L  L  L+  DN +    P 
Sbjct: 143 -NISPL----AGLTNLQYLSIGN-----AQVSDLT-PLANLSKLTTLKADDNKISDISP- 190

Query: 182 CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKI 241
            LA++ +L  + +  NQ++     SPL + +++ ++ L++      I+ +P+F ++ L +
Sbjct: 191 -LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQ----TITNQPVFYNNNLVV 242

Query: 242 FYADNNELNAEI---TQSHSLTAPNFQLNRLLLSSSYGDGFIF 281
                    A I   T S + T  +  L   L S      + F
Sbjct: 243 PNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTF 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 32/222 (14%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNL 88
           +  +   +    +N TD          +   +  L+       ++ ++ +  L  +L  L
Sbjct: 17  ALANAIKIAAGKSNVTDT-----VTQADLDGITTLSA--FGTGVTTIEGVQYL-NNLIGL 68

Query: 89  SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILG 148
            +   ++  +       +   +  L +S  P+   ++        + S+K L L+     
Sbjct: 69  ELKDNQITDL---APLKNLTKITELELSGNPLKNVSAI-----AGLQSIKTLDLT----- 115

Query: 149 TNSSRILD-QGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSP 207
             S++I D   L  L +LQ L +  N +    P  LA +T+L+ L +   Q++     +P
Sbjct: 116 --STQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS---DLTP 168

Query: 208 LVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
           L +L+ +  L   DN       + PL +   L   +  NN++
Sbjct: 169 LANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 48/244 (19%), Positives = 101/244 (41%), Gaps = 29/244 (11%)

Query: 310 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI-----LPS 364
           ++    L  L L ++ I      P+    ++  L++S N         + ++     L S
Sbjct: 59  VQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNP--------LKNVSAIAGLQS 108

Query: 365 LFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL 424
           + + ++++  +  +  +    +  LQ+L L  N +T  I   LA G  NL  L++ N  +
Sbjct: 109 IKTLDLTSTQI--TDVTPLAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQV 163

Query: 425 QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 484
                +   NL+ L  L  + N+ + +I   L+   +L  ++L NN +S   P  L N +
Sbjct: 164 SD--LTPLANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTS 217

Query: 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK 544
            L  + + N  +           + L + ++        + P+T S+     S +L++N 
Sbjct: 218 NLFIVTLTNQTITNQPVFYN---NNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNL 274

Query: 545 LNGK 548
            +  
Sbjct: 275 TSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 16/186 (8%)

Query: 385 NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLE 444
            +     +    +++T  + +        + +L+     +          L NL  L L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELK 71

Query: 445 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 504
            N+ + ++   L   + +  L L+ N L       +  L  ++ + + +  +    P   
Sbjct: 72  DNQ-ITDLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125

Query: 505 CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV 564
             L  LQ+L +  N I+     S  + L  ++ L +   +++   P  L  L  L     
Sbjct: 126 AGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 565 AYNNLS 570
             N +S
Sbjct: 181 DDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 56/304 (18%), Positives = 104/304 (34%), Gaps = 39/304 (12%)

Query: 149 TNSSRILD-QGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSP 207
           T  + I       +L +  ++    +++  ++    A++  +  L      +T   +   
Sbjct: 4   TQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEG 58

Query: 208 LVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLN 267
           + +L ++  L L DN       L PL N +++       N L   ++    L      + 
Sbjct: 59  VQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIK 110

Query: 268 RLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG 327
            L L+S+          L    +L+ + L   ++    P   L     L+ L + N  + 
Sbjct: 111 TLDLTST---QITDVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVS 164

Query: 328 GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI-----LPSLFSFNISTNALHGSIPSS 382
                P+    +L  L   +N         I DI     LP+L   ++  N +  S  S 
Sbjct: 165 DL--TPLANLSKLTTLKADDNK--------ISDISPLASLPNLIEVHLKNNQI--SDVSP 212

Query: 383 FGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTN--LKW 440
             N   L I+ L+N  +T +   Y     V       S   +     S N    +  L W
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272

Query: 441 LLLE 444
            L  
Sbjct: 273 NLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 28/235 (11%)

Query: 310 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369
           L+N  K+  L L  + +       I   + ++ LD+++       P+     L +L    
Sbjct: 81  LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPLAG---LSNLQVLY 135

Query: 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF 429
           +  N +  +  S    +  LQ L + N  ++   P  LA     L +L   +N +     
Sbjct: 136 LDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LA-NLSKLTTLKADDNKIS--DI 188

Query: 430 SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489
           S   +L NL  + L+ N+     P  L+  S+L  + L N +++ +   +  NL     +
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

Query: 490 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK 544
             P+                +    ISDN         T++    I ++  ++N+
Sbjct: 247 KGPSG-------------APIAPATISDNGTYASP-NLTWNLTSFINNVSYTFNQ 287

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 39/219 (17%), Positives = 72/219 (32%), Gaps = 16/219 (7%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
           D+  +          L      +F     L+ +++S N +   I   +      L+ + +
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 420 SNNN----LQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLSG 474
              N    +    F    NL NL++LL+        +P            L + +N    
Sbjct: 87  EKANNLLYINPEAFQ---NLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 475 KIP-RWLGNLT-RLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSN 531
            I       L+     + +  N ++  I    F    L ++    +NN+   L    F  
Sbjct: 143 TIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHG 200

Query: 532 LKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
                 LD+S  +++    + L  LK L   S    NL 
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARS--TYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 9e-13
 Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 15/212 (7%)

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIS-TNALHGSIPSSFGNMKFLQILDLSN 396
             L  +++S N+    +  ++   LP L    I   N L    P +F N+  LQ L +SN
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

Query: 397 NHLTGEIPEYLAVGCVNLNSLALSNNN----LQGHMFSRNFNLT-NLKWLLLEGNRFVGE 451
             +   +P+   +  +    L + +N     ++ + F     L+     L L  N     
Sbjct: 114 TGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSFESVILWLNKNGIQEI 169

Query: 452 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 511
              + +     E    +NN+L           +    + +    +          L  L+
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229

Query: 512 ILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543
                +     + +P+    L  +    L+Y 
Sbjct: 230 ARSTYNL----KKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 29/219 (13%), Positives = 62/219 (28%), Gaps = 10/219 (4%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
             +   L         I          F +LE + + ++ +   +   + S  P L  + 
Sbjct: 29  PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGT 149
           I        +  + F +  +L++L +S   I        +          L +  +I   
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 150 NSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLV 209
              R    GL        L +  N ++              +     N L   + +    
Sbjct: 143 TIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFH 199

Query: 210 HLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNE 248
             +   +L +S       +    L N  +L+     N +
Sbjct: 200 GASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 63/288 (21%)

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
            +   L     +L   I          +E + +S N     I  +   N  +L     + 
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 247 NELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306
                               N LL        +I P+   +  +L+++ +S+  +    P
Sbjct: 89  A-------------------NNLL--------YINPEAFQNLPNLQYLLISNTGIK-HLP 120

Query: 307 TWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLF 366
                ++ +   L +                  +    +  N+F G              
Sbjct: 121 DVHKIHSLQKVLLDI---------------QDNINIHTIERNSFVGLSF--------ESV 157

Query: 367 SFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ- 425
              ++ N +     S+F   +  ++    NN+L  E+P  +  G      L +S   +  
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS 216

Query: 426 --GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 471
              +      NL  L+       +   ++P +L K  +L    L   S
Sbjct: 217 LPSYGLE---NLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 56/283 (19%)

Query: 75  LQSI-ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES 133
           +  I + L  +   L     ++  V++   F  F  LE + +S   +      L++I   
Sbjct: 21  VTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDV------LEVIEAD 73

Query: 134 ----MPSLKYLSLSGSILGTNSSRILDQGLCS-LVHLQELRMADNDLRGSLPWCLANMTS 188
               +P L  + +  +    N+   ++      L +LQ L +++  ++        +   
Sbjct: 74  VFSNLPKLHEIRIEKA----NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 189 LRILDVSFNQLTGSISSSPLVHLTS-IEMLILSDNHFQIPISLEP-LFNHSRL-KIFYAD 245
             +LD+  N    +I  +  V L+    +L L+ N  Q    +    FN ++L ++  +D
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSD 186

Query: 246 NNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEF 305
           NN L                              +     +       +D+S  +++   
Sbjct: 187 NNNLEE----------------------------LPNDVFHGASGPVILDISRTRIH-SL 217

Query: 306 PTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN 348
           P++ LEN  KL      N                L    ++  
Sbjct: 218 PSYGLENLKKLRARSTYNLKKLPTL----EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 37/228 (16%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASL------- 81
            F  L  +++S N+     +    E   F+NL  L      + I    ++  +       
Sbjct: 52  GFGDLEKIEISQND-----VLEVIEADVFSNLPKLH----EIRIEKANNLLYINPEAFQN 102

Query: 82  FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES-----MPS 136
            P+L+ L IS   +   L             L +       N + +  I  +        
Sbjct: 103 LPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD-----NIN-IHTIERNSFVGLSFE 155

Query: 137 LKYLSLSGSILGTNSSRILDQGLCSLVHLQELR-MADNDLRGSLPWCLANMTSLRILDVS 195
              L L+      N  + +     +   L EL    +N+L           +   ILD+S
Sbjct: 156 SVILWLNK-----NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 196 FNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
             ++  S+ S  L +L  +     S  + +   +LE L       + Y
Sbjct: 211 RTRIH-SLPSYGLENLKKLR--ARSTYNLKKLPTLEKLVALMEASLTY 255

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 84/494 (17%), Positives = 153/494 (30%), Gaps = 72/494 (14%)

Query: 3   GLRKLKSFGLSGVGIRD--GSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNL 60
           G      F L   G        +     S+  L  + L     TD  +       +F N 
Sbjct: 75  GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL--IAKSFKNF 132

Query: 61  EYLTLDE-SSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSF----KSLEHLHM 115
           + L L          L +IA+   +LK L +   +V+ V  G     F     SL  L++
Sbjct: 133 KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV-SGHWLSHFPDTYTSLVSLNI 191

Query: 116 SFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHL---QELRMAD 172
           S     ++ S L+ +    P+LK L L+ ++     + +L Q    L  L          
Sbjct: 192 SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVR 250

Query: 173 NDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEP 232
            D+   L   L+    LR L   F     +   +     + +  L LS    Q       
Sbjct: 251 PDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ------- 302

Query: 233 LFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLE 292
                        + +L   + Q   L        RL +     D  +         DL 
Sbjct: 303 -------------SYDLVKLLCQCPKLQ-------RLWVLDYIEDAGLEV-LASTCKDLR 341

Query: 293 FVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG 352
            + +   +     P   L     L ++                   +L  +         
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQG-LVSV--------------SMGCPKLESVLYFCRQMTN 386

Query: 353 HMPVEIGDILPSLFSFNIS-----------TNALHGSIPSSFGNMKFLQILDLSNNHLTG 401
              + I    P++  F +               L     +   + K L+ L LS   LT 
Sbjct: 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTD 445

Query: 402 EIPEYLAVGCVNLNSLALSNNNLQGH-MFSRNFNLTNLKWLLLEGNRFVGE-IPQSLSKC 459
           ++ EY+      +  L+++        M        +L+ L +    F  + +  + SK 
Sbjct: 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505

Query: 460 SSLEGLYLNNNSLS 473
            ++  L++++ S+S
Sbjct: 506 ETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 67/537 (12%), Positives = 152/537 (28%), Gaps = 76/537 (14%)

Query: 55  HNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLH 114
           +         +   + +     ++   FP ++++ +              P F     + 
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK-----------PHFADFNLVP 86

Query: 115 MSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADND 174
             +        +++ +  S   L+ + L   ++  +   ++ +   +   L  L   +  
Sbjct: 87  DGWG--GYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVL-VLSSCEGF 143

Query: 175 LRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHL----TSIEMLILSDNHFQI-PIS 229
               L    A   +L+ LD+  + +   +S   L H     TS+  L +S    ++   +
Sbjct: 144 STDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202

Query: 230 LEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQH 289
           LE L                                L  L L+ +     +    L    
Sbjct: 203 LERLVTRCP--------------------------NLKSLKLNRAVPLEKLAT-LLQRAP 235

Query: 290 DLEFVDLSHIKMNGEFPTW-----LLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 344
            LE +             +      L    +L  L    D++            RL  L+
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 345 VSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLS--------- 395
           +S    Q +  V++    P L    +        +       K L+ L +          
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355

Query: 396 NNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSR-NFNLTNLKWLLLEGNRFVGEIPQ 454
           N  LT +    +++GC  L S+      +          N  N+                
Sbjct: 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF------------- 402

Query: 455 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514
            L         YL    L       + +   L+ + +     +            +++L 
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS 462

Query: 515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK-MPHQLVELKTLEVFSVAYNNLS 570
           ++    S   +    S    +  L++       K +     +L+T+    ++  ++S
Sbjct: 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 61/447 (13%), Positives = 137/447 (30%), Gaps = 58/447 (12%)

Query: 3   GLRKLKSFGLSGV-GIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL-HNFTNL 60
             +  K   LS   G      L     +  +L  LDL  ++  D++          +T+L
Sbjct: 128 SFKNFKVLVLSSCEGFSTDG-LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 61  EYLTLDESSLHIS--LLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFA 118
             L +   +  +S   L+ + +  P+LK+L ++                           
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV------------------------ 222

Query: 119 PIALNTSFLQIIGESMPSLKYLSLSG--SILGTNSSRILDQGLCSLVHLQELRMADNDLR 176
                   L  + +  P L+ L   G  + +  +    L   L     L+ L    + + 
Sbjct: 223 ----PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 177 GSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLIL----SDNHFQIPISLEP 232
             LP   +  + L  L++S+  +        L     ++ L +     D   ++  S   
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 233 LFNHSRLKIFYADNNELNAEITQS--HSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHD 290
                R+        E N  +T+    S++    +L  +L                ++ +
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398

Query: 291 LEFVDLSHIKMNGEFPTW----------LLENNAKLETLFL---INDSIGGPFRLPIHPH 337
           +    L  I+                  ++E+   L  L L   + D       +  +  
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDK--VFEYIGTY-A 455

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIS-TNALHGSIPSSFGNMKFLQILDLSN 396
           +++  L V+           +     SL    I        ++ ++   ++ ++ L +S+
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

Query: 397 NHLTGEIPEYLAVGCVNLNSLALSNNN 423
             ++    + L      LN   +    
Sbjct: 516 CSVSFGACKLLGQKMPKLNVEVIDERG 542

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 14/185 (7%)

Query: 314 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN 373
                L L  + +       + P+ RL  L++          +++   LP L + ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87

Query: 374 ALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFS 430
            L  S+P     +  L +LD+S N LT  +P     G   L  L L  N L+     + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 431 RNFNLTNLKWLLLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489
                  L+ L L  N    E+P  L +   +L+ L L  NSL   IP+       L + 
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 490 IMPNN 494
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 7/158 (4%)

Query: 389 LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448
             IL LS N L         +    L  L L    L       +  L  L  L L  N+ 
Sbjct: 33  TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQL 89

Query: 449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQL 507
              +P       +L  L ++ N L+  +P   L  L  LQ + +  N L+   P      
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545
             L+ L +++NN++  L     + L+ +++L L  N L
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 45/191 (23%), Positives = 70/191 (36%), Gaps = 20/191 (10%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
           D+       ++S N L+    ++      L  L+L    LT ++          L +L L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDL 84

Query: 420 SNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLS 473
           S+N LQ          L  L  L +  NR       SL          L+ LYL  N L 
Sbjct: 85  SHNQLQ--SLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNELK 137

Query: 474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNL 532
              P  L    +L+ + + NN+L   +P      L+ L  L + +N++    IP  F   
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT--IPKGFFGS 194

Query: 533 KQIESLDLSYN 543
             +    L  N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 16/161 (9%)

Query: 389 LQILDLSNNHLT---GEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG 445
              ++    +LT    ++P        +   L LS N L     +     T L  L L+ 
Sbjct: 12  HLEVNCDKRNLTALPPDLP-------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-F 504
              + ++         L  L L++N L   +P     L  L  + +  N L   +P+   
Sbjct: 65  AE-LTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGAL 120

Query: 505 CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545
             L  LQ L +  N +   L P   +   ++E L L+ N L
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 49/231 (21%), Positives = 82/231 (35%), Gaps = 48/231 (20%)

Query: 21  SKLLQSM--GSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSI 78
            + L ++          L LS N     ++ T   L  +T L  L LD + L      + 
Sbjct: 19  KRNLTALPPDLPKDTTILHLSENLLYTFSLAT---LMPYTRLTQLNLDRAEL------TK 69

Query: 79  ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLK 138
             +  +L  L       N             L+ L +                 ++P+L 
Sbjct: 70  LQVDGTLPVLGTLDLSHN------------QLQSLPLLGQ--------------TLPALT 103

Query: 139 YLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLP-WCLANMTSLRILDVSFN 197
            L +S + L +     L      L  LQEL +  N+L+ +LP   L     L  L ++ N
Sbjct: 104 VLDVSFNRLTSLPLGALRG----LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN 158

Query: 198 QLTGSISSSPLVHLTSIEMLILSDNHFQ-IPISLEPLFNHSRLKIFYADNN 247
            LT  + +  L  L +++ L+L +N    IP   +  F    L   +   N
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 15/141 (10%)

Query: 434 NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN 493
            + +   +  +       +P  L        L+L+ N L       L   TRL  + +  
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP--- 550
             L   + V    L +L  LD+S N +    +P     L  +  LD+S+N+L   +P   
Sbjct: 65  AELTK-LQV-DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

Query: 551 -HQLVELKTLEVFSVAYNNLS 570
              L EL+ L    +  N L 
Sbjct: 120 LRGLGELQEL---YLKGNELK 137

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 33/237 (13%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNL 88
           +F      +L   + TD         +   +++ +    ++  I  +Q I  L P++  L
Sbjct: 22  AFAETIKDNLKKKSVTDA-----VTQNELNSIDQIIA--NNSDIKSVQGIQYL-PNVTKL 73

Query: 89  SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILG 148
            ++    N +   +   + K+L  L +    +  + S L    + +  LK LSL  +   
Sbjct: 74  FLNG---NKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSLEHN--- 122

Query: 149 TNSSRILD-QGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSP 207
                I D  GL  L  L+ L + +N +       L+ +T L  L +  NQ++      P
Sbjct: 123 ----GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVP 173

Query: 208 LVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL-NAEITQSHSLTAPN 263
           L  LT ++ L LS NH      L  L     L +    + E  N  I    +L  PN
Sbjct: 174 LAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 46/282 (16%), Positives = 92/282 (32%), Gaps = 34/282 (12%)

Query: 3   GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEY 62
              +     L    + D            S++ +  + ++   +     Q +    N+  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSV-----QGIQYLPNVTK 72

Query: 63  LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL 122
           L L  +   ++ ++ +A+L  +L  L +   +V  +         K L+ L +    I+ 
Sbjct: 73  LFL--NGNKLTDIKPLANL-KNLGWLFLDENKVKDL---SSLKDLKKLKSLSLEHNGISD 126

Query: 123 NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILD-QGLCSLVHLQELRMADNDLRGSLPW 181
                      +P L+ L L         ++I D   L  L  L  L + DN +   +  
Sbjct: 127 INGL-----VHLPQLESLYLGN-------NKITDITVLSRLTKLDTLSLEDNQIS-DIV- 172

Query: 182 CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKI 241
            LA +T L+ L +S N ++       L  L ++++L L          +    N      
Sbjct: 173 PLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLN-KPINHQSNLVVPNT 228

Query: 242 FYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPK 283
               +  L      S         +   L   +    FIF +
Sbjct: 229 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 270

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 19/230 (8%)

Query: 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL 399
               ++   +          + L S+     + + +  S+      +  +  L L+ N L
Sbjct: 26  TIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 80

Query: 400 TGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKC 459
           T +I         NL  L L  N +     S   +L  LK L LE N  + +I   L   
Sbjct: 81  T-DIKPLA--NLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNG-ISDIN-GLVHL 133

Query: 460 SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 519
             LE LYL NN ++      L  LT+L  + + +N +   +P     L  LQ L +S N+
Sbjct: 134 PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189

Query: 520 ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569
           IS        + LK ++ L+L   +   K  +    L           +L
Sbjct: 190 ISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 47/291 (16%), Positives = 90/291 (30%), Gaps = 75/291 (25%)

Query: 183 LANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242
                     ++    +T    +     L SI+ +I +++  +   S++ +     +   
Sbjct: 20  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 73

Query: 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMN 302
           + + N+L  +I    +L      L  L L  +               DL           
Sbjct: 74  FLNGNKLT-DIKPLANLK----NLGWLFLDEN------------KVKDLSS--------- 107

Query: 303 GEFPTWLLENNAKLETLFLINDSIGGPFRL-PIHPHRRLRFLDVSNNNFQGHMPVEIGDI 361
                  L++  KL++L L ++ I     +  +    +L  L + NN         I DI
Sbjct: 108 -------LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNK--------ITDI 149

Query: 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN 421
                              +    +  L  L L +N ++ +I      G   L +L LS 
Sbjct: 150 -------------------TVLSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSK 187

Query: 422 NNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 472
           N++          L NL  L L     + +     S       +   + SL
Sbjct: 188 NHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 42/240 (17%), Positives = 86/240 (35%), Gaps = 27/240 (11%)

Query: 310 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI-----LPS 364
           ++    +  LFL  + +      P+   + L +L +  N         + D+     L  
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKK 113

Query: 365 LFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL 424
           L S ++  N +  S  +   ++  L+ L L NN +T      L+     L++L+L +N +
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLS-RLTKLDTLSLEDNQI 168

Query: 425 QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 484
                     LT L+ L L  N  + ++ ++L+   +L+ L L +     K      NL 
Sbjct: 169 S--DIVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS-TFSNLKQIESLDLSYN 543
               +   +  L  P  +        +  ++  +        S  F     I      ++
Sbjct: 225 VPNTVKNTDGSLVTPEIISD--DGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 282

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 389 LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEG 445
             +LDLS+N+L+    E+      NL+SL LS+N+L       F     + NL++L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-- 503
           N          S   +LE L L NN +         ++ +LQ + +  N +    PVE  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 504 --FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLS 541
               +L  L +LD+S N +  +L  +    L       L 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 19/188 (10%)

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ----GHMFSRNFNLTNLKWLLLEG 445
            IL  S   L   +P+ L      L+   LS+NNL         +    LTNL  LLL  
Sbjct: 21  NILSCSKQQLP-NVPQSLPSYTALLD---LSHNNLSRLRAEWTPT---RLTNLHSLLLSH 73

Query: 446 NRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE- 503
           N  +  I  ++     +L  L L++N L         +L  L+ +++ NNH+   +    
Sbjct: 74  NH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNA 131

Query: 504 FCQLDLLQILDISDNNISGRLIPSTFSN---LKQIESLDLSYNKLNGKMPHQLVELKTLE 560
           F  +  LQ L +S N IS R       +   L ++  LDLS NKL       L +L    
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 561 VFSVAYNN 568
              +  +N
Sbjct: 191 KNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQYIIMPNNHLEGPIPVE-FCQLD 508
            +PQSL   S    L L++N+LS     W    LT L  +++ +NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 509 LLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN 568
            L+ LD+S N++   L    FS+L+ +E L L  N +     +   ++  L+   ++ N 
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 569 LSGEIPE 575
           +S   P 
Sbjct: 148 IS-RFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 75  LQSI-ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL--NTSFLQIIG 131
           L ++  SL      L +S+  ++ +          +L  L +S   +    + +F     
Sbjct: 30  LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF----- 84

Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW-CLANMTSLR 190
             +P+L+YL LS + L T    +       L  L+ L + +N +   +      +M  L+
Sbjct: 85  VPVPNLRYLDLSSNHLHTLDEFLFS----DLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ 139

Query: 191 ILDVSFNQLTGSISS---SPLVHLTSIEMLILSDNHFQ-IPISLEPLFNHSRLKIFYADN 246
            L +S NQ++             L  + +L LS N  + +P++             Y  N
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

Query: 247 N 247
           N
Sbjct: 199 N 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 47/215 (21%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
                 LDLS+NN +   +         TNL  L L  +      L  I+S         
Sbjct: 38  PSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNH-----LNFISS--------- 81

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPI-ALNTSFLQIIGESMPSLKYLSLSGSILG 148
                              +L +L +S   +  L+          + +L+ L L      
Sbjct: 82  -------EAFVPV-----PNLRYLDLSSNHLHTLDEFLFS----DLQALEVLLLYN---- 121

Query: 149 TNSSRILDQG-LCSLVHLQELRMADNDLRGSLPW----CLANMTSLRILDVSFNQLTGSI 203
            N   ++D+     +  LQ+L ++ N +    P         +  L +LD+S N+L   +
Sbjct: 122 -NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KL 178

Query: 204 SSSPLVHLTSI--EMLILSDNHFQIPISLEPLFNH 236
             + L  L +     L L +N  +    L  LF+H
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSH 213

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 135 PSLKYLSLSGSILGTNSSRILDQG--LCSLVHLQELRMADNDLRGSLPWCLANMTSLRIL 192
                L LS      N+   L        L +L  L ++ N L          + +LR L
Sbjct: 39  SYTALLDLSH-----NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93

Query: 193 DVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEP-LFNH-SRLKIFYADNNEL 249
           D+S N L  ++       L ++E+L+L +NH      ++   F   ++L+  Y   N++
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQI 148

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 79/526 (15%), Positives = 150/526 (28%), Gaps = 80/526 (15%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
           FP+L +L L                        +  +        +  I++    LK++ 
Sbjct: 72  FPNLRSLKLKGKP-------------RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH 118

Query: 90  ISYCEV-NGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILG 148
                V +  L          LE L +        T  L  I      +K L +  S   
Sbjct: 119 FRRMIVSDLDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFS 177

Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRG----SLPWCLANMTSLRILDVSF-NQLTGSI 203
               + L +       L+ L     +        L     N  SL  + V     L    
Sbjct: 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237

Query: 204 SSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
                 +L       L+++                              + + +      
Sbjct: 238 FFKAAANLEEFCGGSLNED----------------------------IGMPEKYMNLVFP 269

Query: 264 FQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN 323
            +L RL LS    +    P        +  +DL +  +  E    L++    LE L   N
Sbjct: 270 RKLCRLGLSYMGPNEM--PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327

Query: 324 D-SIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSS 382
                G   L  +  ++L+ L +     +  M  E G          +S   L  ++   
Sbjct: 328 VIGDRGLEVLAQY-CKQLKRLRIERGADEQGMEDEEG---------LVSQRGLI-ALAQG 376

Query: 383 FGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLL 442
                 L+ + +  + +T E  E +     NL    L           R   +T+L    
Sbjct: 377 CQE---LEYMAVYVSDITNESLESIGTYLKNLCDFRLVL-------LDREERITDLP--- 423

Query: 443 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG-NLTRLQYIIMPNNHLEGPIP 501
              +  V  +     K       YL    L+     ++G     ++++++          
Sbjct: 424 --LDNGVRSLLIGCKKLRRFA-FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480

Query: 502 VEFCQ-LDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
           +EF +    LQ L++     S R I +  + L  +  L +   + +
Sbjct: 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 70/504 (13%), Positives = 141/504 (27%), Gaps = 63/504 (12%)

Query: 3   GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSY-NNFTDIAITTTQELHNFTNLE 61
            LR+LKS     + + D      +      L TL L   + FT   +     + +   ++
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL--LSIVTHCRKIK 167

Query: 62  YLTLDESSLH---ISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSF----KSLEHLH 114
            L ++ESS        L  +A    SL+ L+    E   +   +   +     +SL  + 
Sbjct: 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI-SPKDLETIARNCRSLVSVK 226

Query: 115 MSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQ--GLCSLVHLQELRMAD 172
           +    I     F +       +L+                         L  L    M  
Sbjct: 227 VGDFEILELVGFFKA----AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 173 NDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEP 232
           N++    P+       +R LD+ +  L      + +    ++E+L   +        LE 
Sbjct: 283 NEMPILFPFA----AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD--RGLEV 336

Query: 233 LFNH-SRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDL 291
           L  +  +LK            +           +    L+S     G I         +L
Sbjct: 337 LAQYCKQLK-----------RLRIERGADEQGMEDEEGLVSQ---RGLIA--LAQGCQEL 380

Query: 292 EFVDLSHIKMNGEFPTWLLENNAKLETLFLIN---------DSIGGPFRLPIHPHRRLRF 342
           E++ +    +  E    +      L    L+            +    R  +   ++LR 
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440

Query: 343 LDVSNN--NFQGHMPVEIGDILPSLFSFNISTNALH-GSIPSSFGNMKFLQILDLSNNHL 399
                            IG   P++    +         +         LQ L++     
Sbjct: 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

Query: 400 TGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGE--IPQ 454
           +            +L  L +           +        N++ +       V +    +
Sbjct: 501 SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIR 560

Query: 455 SLSKCSSLEGLYLNNNSLSGKIPR 478
            +   + +   Y    SL+G   R
Sbjct: 561 EMEHPAHILAYY----SLAG--QR 578

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 62/481 (12%), Positives = 124/481 (25%), Gaps = 75/481 (15%)

Query: 124 TSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL 183
           T+    +    P+L+ L L G        R     L        +     ++  +L    
Sbjct: 62  TATPDRLSRRFPNLRSLKLKGK------PRAAMFNLIPENWGGYVTPWVTEISNNLR--- 112

Query: 184 ANMTSLRILDVSFNQLT-GSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242
                L+ +      ++   +          +E L L          L  +  H R    
Sbjct: 113 ----QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR---- 164

Query: 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYG---DGFIFPKFLYHQHDLEFVDLSHI 299
                                 ++  LL+  S     DG    +   H   LE ++    
Sbjct: 165 ----------------------KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT 202

Query: 300 KMNG---EFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPV 356
           +      +    +  N   L ++ + +  I             L      + N    MP 
Sbjct: 203 EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPE 261

Query: 357 EIGDILPSLFSFNIS--TNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNL 414
           +  + L           +      +P  F     ++ LDL    L  E    L   C NL
Sbjct: 262 KYMN-LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320

Query: 415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK------------CSSL 462
             L   N      +         LK L +E       +                  C  L
Sbjct: 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380

Query: 463 EGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNH------LEGPIPVEFCQLDLLQI 512
           E + +  + ++ +    I  +L NL   + +++          L+  +         L+ 
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440

Query: 513 LDISDN--NISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE-LKTLEVFSVAYNNL 569
                    ++   +         +  + L Y   + +   +       L+   +     
Sbjct: 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

Query: 570 S 570
           S
Sbjct: 501 S 501

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 52/304 (17%), Positives = 96/304 (31%), Gaps = 40/304 (13%)

Query: 8   KSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITT-TQELHNFTNLEYLTL- 65
           KS  L  +   D   +   +    S+  + LS N     A    ++ + +  +LE     
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 66  -----DESSLHISLLQSIASLF---PSLKNLSISYCEV--NGVLR-GQGFPSFKSLEHLH 114
                         L+ +       P L  + +S                     LEHL+
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 115 MSFAPI----------ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH 164
           +    +          AL    +    ++ P L+ +    + L   S +   +   S   
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188

Query: 165 LQELRMADNDLR-----GSLPWCLANMTSLRILDVSFNQLT--GSIS-SSPLVHLTSIEM 216
           L  ++M  N +R       L   LA    L++LD+  N  T  GS + +  L    ++  
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248

Query: 217 LILSDNHFQ------IPISLEPLFNHSRLKIFYADNNELNAEITQ--SHSLTAPNFQLNR 268
           L L+D          +  +   L N   L+      NE+  +  +     +      L  
Sbjct: 249 LGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307

Query: 269 LLLS 272
           L L+
Sbjct: 308 LELN 311

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 50/292 (17%), Positives = 92/292 (31%), Gaps = 60/292 (20%)

Query: 310 LENNAKLETLFLINDSIGGPFRLPI----HPHRRLRFLDVSNNNFQGHMPVEIGDIL--- 362
           L  +  ++ + L  ++IG      +       + L   + S+  F G +  EI + L   
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLL 86

Query: 363 -------PSLFSFNISTNAL--HG--SIPSSFGNMKFLQILDLSNNHLTGE--------- 402
                  P L +  +S NA        +         L+ L L NN L  +         
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 403 ---IPEYLAVGCVNLNSLALSNNNLQ-------GHMFSRNFNLTNLKWLLLEGNRF---- 448
                   A     L S+    N L+          F  +     L  + +  N      
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIRPEG 203

Query: 449 -VGEIPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNHL--EGPIP 501
               + + L+ C  L+ L L +N+ +      +   L +   L+ + + +  L   G   
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 502 V----EFCQLDLLQILDISDNNISGR----LIPSTFSNLKQIESLDLSYNKL 545
           V       +   LQ L +  N I       L       +  +  L+L+ N+ 
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 55/315 (17%), Positives = 97/315 (30%), Gaps = 58/315 (18%)

Query: 283 KFLYHQHDLEFVDLSHIKMN---GEFPTWL------LENNAKLETLFLINDSIGG----P 329
           + +  + DLE  + S I       E P  L      L    KL T+ L +++ G     P
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113

Query: 330 FRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFL 389
               +  H  L  L + NN        +I   L  L            ++     N   L
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL------------AVNKKAKNAPPL 161

Query: 390 QILDLSNNHLTGEIPEYLAVG---CVNLNSLALSNNNLQ--------GHMFSRNFNLTNL 438
           + +    N L     +  A        L+++ +  N ++            +       L
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC---QEL 218

Query: 439 KWLLLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSLS-------GKIPRWLGNLTRLQ 487
           K L L+ N F       +  +L    +L  L LN+  LS             L N+  LQ
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQ 277

Query: 488 YIIMPNNHLEGPIPVEFCQ-----LDLLQILDISDNNIS--GRLIPSTFSNLKQIESLDL 540
            + +  N +E              +  L  L+++ N  S    ++             +L
Sbjct: 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337

Query: 541 SYNKLNGKMPHQLVE 555
                  ++  +  E
Sbjct: 338 DELDDMEELTDEEEE 352

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 43/236 (18%), Positives = 69/236 (29%), Gaps = 54/236 (22%)

Query: 385 NMKFLQILDLSNNHLTGEIPEYLAVG---CVNLNSLALSNNNLQ-------------GHM 428
               ++ + LS N +  E   +L+       +L     S+                    
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 429 FSRNFNLTNLKWLLLEGNRF----VGEIPQSLSKCSSLEGLYLNNNSLS----------- 473
             +   L  ++   L  N F       +   LSK + LE LYL+NN L            
Sbjct: 90  LLKCPKLHTVR---LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 474 --GKIPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNIS----GR 523
               + +   N   L+ II   N LE          F    LL  + +  N I       
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 524 LIPSTFSNLKQIESLDLSYNKLN-------GKMPHQLVELKTLEVFSVAYNNLSGE 572
           L+    +  ++++ LDL  N                L     L    +    LS  
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA---LKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 57/371 (15%), Positives = 110/371 (29%), Gaps = 92/371 (24%)

Query: 136 SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDL--RG--SLPWCLANMTSLRI 191
           S++  SL    + T   + +   L     ++E+ ++ N +       L   +A+   L I
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 192 LDVSFNQLTGSISSSP---------LVHLTSIEMLILSDNHF----QIPISLEPLFNHSR 238
            + S           P         L+    +  + LSDN F    Q P+  + L  H+ 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHTP 123

Query: 239 LKIFYADNNELNAEITQ--SHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDL 296
           L+  Y  NN L  +     + +L                               L  +  
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-----------------LRSIIC 166

Query: 297 SHIKMNGEFPTWL---LENNAKLETLFLINDSIG-----GPFRLPIHPHRRLRFLDVSNN 348
              ++            +++  L T+ ++ + I            +   + L+ LD+ +N
Sbjct: 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 349 NFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA 408
            F       +   L                      +   L+ L L++  L+        
Sbjct: 227 TFTHLGSSALAIALK---------------------SWPNLRELGLNDCLLSAR------ 259

Query: 409 VGCVNL-NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF----VGEIPQSL-SKCSSL 462
            G   + ++ +   N               L+ L L+ N      V  +   +  K   L
Sbjct: 260 -GAAAVVDAFSKLEN-------------IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 463 EGLYLNNNSLS 473
             L LN N  S
Sbjct: 306 LFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 36/231 (15%)

Query: 27  MGSFPSLNTLDLSYNNFTDIAITT-TQELHNFTNLEYLTLDESSLHISLLQSIASLF--- 82
           M  F S+    L  +  T     +    L    +++ + L  +++     + ++      
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 83  PSLKNLSISYCEVNGVLR---------GQGFPSFKSLEHLHMSFAPIALNTSFLQIIGE- 132
             L+    S      V            Q       L  + +S           + + + 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA--QEPLIDF 117

Query: 133 --SMPSLKYLSLSGSILGTNSSRILDQGLCSLV---------HLQELRMADNDLR--GSL 179
                 L++L L  + LG  +   + + L  L           L+ +    N L      
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 180 PWC--LANMTSLRILDVSFNQLT----GSISSSPLVHLTSIEMLILSDNHF 224
            W     +   L  + +  N +       +    L +   +++L L DN F
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 10/187 (5%)

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMKFLQILDLSN 396
             L+ LD+S    Q  +       L  L +  ++ N +  S+   +F  +  LQ L    
Sbjct: 52  PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 109

Query: 397 NHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQS 455
            +L   +  +       L  L +++N +Q       F NLTNL+ L L  N+        
Sbjct: 110 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 456 LSKCSSLEG----LYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 511
           L     +      L L+ N ++  I        RL+ + +  N L+      F +L  LQ
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227

Query: 512 ILDISDN 518
            + +  N
Sbjct: 228 KIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 45/171 (26%), Positives = 65/171 (38%), Gaps = 39/171 (22%)

Query: 379 IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNL 435
           +P S       + LDLS N L   +  Y       L  L LS   +Q      +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 436 TNLKWLLLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN 494
           ++L  L+L GN  +  +     S  SSL+ L                NL  L+       
Sbjct: 76  SHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-----------NLASLE------- 116

Query: 495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545
                       L  L+ L+++ N I    +P  FSNL  +E LDLS NK+
Sbjct: 117 ------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 54/228 (23%), Positives = 87/228 (38%), Gaps = 50/228 (21%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSI-ASLFPSLKNL 88
             S   LDLS+N    +   +     +F  L+ L L         +Q+I    + SL + 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCE-----IQTIEDGAYQSLSH- 77

Query: 89  SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILG 148
                                L  L ++  PI    S        + SL+ L        
Sbjct: 78  ---------------------LSTLILTGNPI---QSLALGAFSGLSSLQKLVAV----E 109

Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRGSLPW--CLANMTSLRILDVSFNQLTGSISSS 206
           TN + + +  +  L  L+EL +A N ++ S       +N+T+L  LD+S N++  SI  +
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167

Query: 207 PLVHLTSIEM----LILSDNHFQIPISLEP-LFNHSRLKIFYADNNEL 249
            L  L  + +    L LS N       ++P  F   RLK    D N+L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN---FIQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 26/176 (14%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS- 89
             L+TL L+ N    +A+     L   ++L+ L   E++L  SL         +LK L+ 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 90  ----ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGE----SMPSLKYLS 141
               I   ++        F +  +LEHL        L+++ +Q I       +  +  L+
Sbjct: 132 AHNLIQSFKLPEY-----FSNLTNLEHLD-------LSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 142 LSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFN 197
           LS   L  N    +  G    + L+EL +  N L+         +TSL+ + +  N
Sbjct: 180 LSLD-LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 20/173 (11%)

Query: 380 PSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLT 436
             +F  +  L++L L++N L   +P  +     NL +L +++N LQ     +F     L 
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFD---QLV 109

Query: 437 NLKWLLLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQYII 490
           NL  L L+ N+      +SL        + L  L L  N L   +P+ +   LT L+ + 
Sbjct: 110 NLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELR 163

Query: 491 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543
           + NN L+      F +L  L+ L + +N +  R+    F +L++++ L L  N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMKFLQILDLSN 396
            +LR L +++N  Q  +P  I   L +L +  ++ N L  ++P   F  +  L  L L  
Sbjct: 61  TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDR 118

Query: 397 NHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
           N L   +P  +      L  L+L  N LQ     +F +   LT+LK L L  N+      
Sbjct: 119 NQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK---LTSLKELRLYNNQLKRVPE 174

Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN 494
            +  K + L+ L L+NN L         +L +L+ + +  N
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 28/177 (15%)

Query: 379 IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNL 435
           IP+        + LDL +N L+  +P         L  L L++N LQ     +F     L
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---L 84

Query: 436 TNLKWLLLEGNRFVGEIPQSL-----SKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQYI 489
            NL+ L +  N+      Q+L      +  +L  L L+ N L   +P  +  +LT+L Y+
Sbjct: 85  KNLETLWVTDNKL-----QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL 138

Query: 490 IMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545
            +  N L+  +P   F +L  L+ L + +N +  R+    F  L ++++L L  N+L
Sbjct: 139 SLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 21/207 (10%)

Query: 21  SKLLQSM--GSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSI 78
           SK L ++          LDL  N  + +        H  T L  L L+++      LQ++
Sbjct: 25  SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKA---FHRLTKLRLLYLNDNK-----LQTL 76

Query: 79  -ASLFPSLKNLSISYCEVNG--VLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMP 135
            A +F  LKNL   +   N    L    F    +L  L +    +    S    + +S+ 
Sbjct: 77  PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL---KSLPPRVFDSLT 133

Query: 136 SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVS 195
            L YLSL  + L +    + D     L  L+ELR+ +N L+         +T L+ L + 
Sbjct: 134 KLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 196 FNQLTGSISSSPLVHLTSIEMLILSDN 222
            NQL   +       L  ++ML L +N
Sbjct: 190 NNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 436 TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQYIIMPNN 494
            + K L L+ N+      ++  + + L  LYLN+N L   +P  +   L  L+ + + +N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 495 HLEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH-- 551
            L+  +P+  F QL  L  L +  N +   L P  F +L ++  L L YN+L   +P   
Sbjct: 96  KLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 552 --QLVELKTL 559
             +L  LK L
Sbjct: 153 FDKLTSLKEL 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 133 SMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL-ANMTSLRI 191
            +  L+ L L+ + L T  + I  +    L +L+ L + DN L+ +LP  +   + +L  
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKE----LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAE 113

Query: 192 LDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEP-LFNH-SRLKIFYADNNEL 249
           L +  NQL  S+       LT +  L L  N  Q   SL   +F+  + LK     NN+L
Sbjct: 114 LRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ---SLPKGVFDKLTSLKELRLYNNQL 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 36/207 (17%), Positives = 80/207 (38%), Gaps = 9/207 (4%)

Query: 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMKFLQILDLSNNH 398
            + L +   + +  +P      LP++    +S +     + S SF N+  +  +++ N  
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 399 LTGEIPEYLAVGCVNLNSLALSNNNLQG-HMFSRNFNLTNLKWLLLEGNRFVGEIPQSL- 456
               I          L  L + N  L+     ++ ++      L +  N ++  IP +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 457 -SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI-IMPNNHLEGPIPVEFCQL-DLLQIL 513
              C+    L L NN  +  +  +  N T+L  + +  N +L       F  +     +L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 514 DISDNNISGRLIPSTFSNLKQIESLDL 540
           D+S  +++  L      +LK++ + + 
Sbjct: 211 DVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 460 SSLEGLYLNNNSLSGKIPRWLGNLTRLQYI-IMPNNHLEGPIPVE-FCQLDLLQILDISD 517
            S + L L    L         NL  +  I +  +  L+  +    F  L  +  ++I +
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRN 89

Query: 518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQ--LVELKTLEVFSVAYNNLSGEIPE 575
                 + P     L  ++ L +    L    P    +       +  +  N     IP 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 13/198 (6%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA-SLFPSLKNLS 89
           PS  TL L   +   I    +    N  N+  + +    + +  L+S +      + ++ 
Sbjct: 31  PSTQTLKLIETHLRTIP---SHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHIE 86

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIG-ESMPSLKYLSLSGSILG 148
           I        +          L+ L +    +     F  +    S      L ++ +   
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGL---KMFPDLTKVYSTDIFFILEITDNPYM 143

Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPL 208
           T+      QGLC+      L++ +N    S+     N T L  + ++ N+    I     
Sbjct: 144 TSIPVNAFQGLCNE--TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 209 VHLTS-IEMLILSDNHFQ 225
             + S   +L +S     
Sbjct: 201 GGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/208 (14%), Positives = 64/208 (30%), Gaps = 36/208 (17%)

Query: 29  SFPSLNTLDLSYNNFTDIAITTTQE--LHNFTNLEYLTLDESSLHISLLQSI-ASLF--- 82
           + P+++ + +S +      +   +    +N + + ++ +     +   L  I        
Sbjct: 53  NLPNISRIYVSIDV----TLQQLESHSFYNLSKVTHIEIR----NTRNLTYIDPDALKEL 104

Query: 83  PSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESM-----PSL 137
           P LK L I    +          S      L ++      +  ++  I  +         
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT------DNPYMTSIPVNAFQGLCNET 158

Query: 138 KYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLP-WCLANMTS-LRILDVS 195
             L L       N    +     +   L  + +  N     +       + S   +LDVS
Sbjct: 159 LTLKLYN-----NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 196 FNQLTGSISSSPLVHLTSIEMLILSDNH 223
              +T ++ S  L HL     LI  +  
Sbjct: 214 QTSVT-ALPSKGLEHLKE---LIARNTW 237

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 1e-11
 Identities = 40/309 (12%), Positives = 80/309 (25%), Gaps = 14/309 (4%)

Query: 237 SRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDL 296
           SR +   +        +               L +     DG   P  ++          
Sbjct: 251 SREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLN 310

Query: 297 SHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPV 356
             +  +     W   ++ K   L                   R       +      +  
Sbjct: 311 DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL----SVEKSTVLQS 366

Query: 357 EIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS 416
           E+      L            +I      +  L     +  + +       AV  +    
Sbjct: 367 ELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS----TLKAVDPMRAAY 421

Query: 417 LALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 476
           L    +              +++ L L        +   L +   +  L L++N L   +
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-AL 478

Query: 477 PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIE 536
           P  L  L  L+ +   +N LE  +      L  LQ L + +N +          +  ++ 
Sbjct: 479 PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 537 SLDLSYNKL 545
            L+L  N L
Sbjct: 537 LLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 3e-11
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 22/222 (9%)

Query: 28  GSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN 87
            +   L   +LS    T        EL +   L+ L  +     ++++         ++ 
Sbjct: 346 ATDEQLFRCELSVEKST----VLQSELESCKELQELEPENKWCLLTIILL-------MRA 394

Query: 88  LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL 147
           L     E   +       +   +          +       ++      ++ L L+   L
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 148 GTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSP 207
               + +    L  L+ +  L ++ N LR +LP  LA +  L +L  S N L    +   
Sbjct: 454 ----TVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDG 503

Query: 208 LVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
           + +L  ++ L+L +N  Q   +++PL +  RL +     N L
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 8e-11
 Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 12/223 (5%)

Query: 349 NFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA 408
             +             LF   +S       + S   + K LQ L+  N      I   + 
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 409 VGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN 468
                L+ L      LQ     +  +     +L    ++F+ E      + + +  L+L 
Sbjct: 394 ----ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST 528
           +  L+  +   L  L  + ++ + +N L   +P     L  L++L  SDN +    +   
Sbjct: 450 HKDLT-VLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN--VDG- 503

Query: 529 FSNLKQIESLDLSYNKLNG-KMPHQLVELKTLEVFSVAYNNLS 570
            +NL +++ L L  N+L        LV    L + ++  N+L 
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 24  LQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP 83
           L  +     +  LDLS+N    +       L     LE L    S   +  +  +A+L P
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRAL----PPALAALRCLEVLQA--SDNALENVDGVANL-P 508

Query: 84  SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYL 140
            L+ L +    +      Q   S   L  L++    +       + + E +PS+  +
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 17/198 (8%)

Query: 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN 421
           L +    N+   ++  +   S   +  +Q  +  N+++   +   +     NL  L LS+
Sbjct: 18  LANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQ-FFTNLKELHLSH 72

Query: 422 NNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 481
           N +     S   +LT L+ L +  NR +  +  +    + L  L+L+NN L       L 
Sbjct: 73  NQI--SDLSPLKDLTKLEELSVNRNR-LKNL--NGIPSACLSRLFLDNNELRDTDS--LI 125

Query: 482 NLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLS 541
           +L  L+ + + NN L+  + +    L  L++LD+  N I+        + LK++  +DL+
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEITN---TGGLTRLKKVNWIDLT 180

Query: 542 YNKLNGKMPHQLVELKTL 559
             K   +      EL   
Sbjct: 181 GQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 35/234 (14%)

Query: 3   GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEY 62
           GL       L    + D    L S      +   +   +N   +       +  FTNL+ 
Sbjct: 17  GLANAVKQNLGKQSVTD----LVSQKELSGVQNFNGDNSNIQSL-----AGMQFFTNLKE 67

Query: 63  LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIAL 122
           L L  S   IS L  +  L   L+ LS++   +  +           L  L +    +  
Sbjct: 68  LHL--SHNQISDLSPLKDL-TKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNELRD 120

Query: 123 NTSFLQIIGESMPSLKYLSLSGSILGTNSSRILD-QGLCSLVHLQELRMADNDLRGSLPW 181
             S        + +L+ LS+        ++++     L  L  L+ L +  N++  +   
Sbjct: 121 TDSL-----IHLKNLEILSIR-------NNKLKSIVMLGFLSKLEVLDLHGNEITNTGG- 167

Query: 182 CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFN 235
            L  +  +  +D++  +      + P+ +   + +     +     IS   + N
Sbjct: 168 -LTRLKKVNWIDLTGQK----CVNEPVKYQPELYITNTVKDPDGRWISPYYISN 216

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 42/239 (17%), Positives = 80/239 (33%), Gaps = 20/239 (8%)

Query: 310 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369
               A      L   S+     +       ++  +  N+N Q    +       +L   +
Sbjct: 15  DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKELH 69

Query: 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF 429
           +S N +  S  S   ++  L+ L ++ N L   +     +    L+ L L NN L+    
Sbjct: 70  LSHNQI--SDLSPLKDLTKLEELSVNRNRLK-NLN---GIPSACLSRLFLDNNELRD--T 121

Query: 430 SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489
               +L NL+ L +  N+ +  I   L   S LE L L+ N ++      L  L ++ +I
Sbjct: 122 DSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 490 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK 548
            +              +L +   +   D      + P   SN        + +      
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRW---ISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 14/161 (8%)

Query: 410 GCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN 469
           G  N     L   ++          L+ ++    + +    +    +   ++L+ L+L++
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSH 72

Query: 470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF 529
           N +S   P  L +LT+L+ + +  N L+    +    L     L + +N +       + 
Sbjct: 73  NQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACL---SRLFLDNNELRD---TDSL 124

Query: 530 SNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
            +LK +E L +  NKL   +   L  L  LEV  +  N ++
Sbjct: 125 IHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 43/217 (19%), Positives = 81/217 (37%), Gaps = 27/217 (12%)

Query: 48  ITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSF 107
           I          N     L + S  ++ L S   L   ++N +      + +    G   F
Sbjct: 9   INQVFPDPGLANAVKQNLGKQS--VTDLVSQKEL-SGVQNFNGDN---SNIQSLAGMQFF 62

Query: 108 KSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQE 167
            +L+ LH+S   I+ + S L    + +  L+ LS++ +       R+ +        L  
Sbjct: 63  TNLKELHLSHNQIS-DLSPL----KDLTKLEELSVNRN-------RLKNLNGIPSACLSR 110

Query: 168 LRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIP 227
           L + +N+LR +    L ++ +L IL +  N+L    S   L  L+ +E+L L  N     
Sbjct: 111 LFLDNNELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT-- 163

Query: 228 ISLEPLFNHSRLKIFYADNNEL-NAEITQSHSLTAPN 263
            +   L    ++        +  N  +     L   N
Sbjct: 164 -NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 37/217 (17%)

Query: 333 PIHPHRRLRFLDVSNNNFQGHMPVEIGDI-----LPSLFSFNISTNALHGSIPSSFGNMK 387
            +     L+ L +S+N         I D+     L  L   +++ N L            
Sbjct: 58  GMQFFTNLKELHLSHNQ--------ISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-- 107

Query: 388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR 447
            L  L L NN L     + L     NL  L++ NN L+         L+ L+ L L GN 
Sbjct: 108 -LSRLFLDNNELRD--TDSLI-HLKNLEILSIRNNKLK--SIVMLGFLSKLEVLDLHGNE 161

Query: 448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL 507
            +      L++   +  + L       +  ++   L     +  P+              
Sbjct: 162 -ITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG------------- 206

Query: 508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK 544
             +    IS+           +      + +   +++
Sbjct: 207 RWISPYYISNGGSYVDGCV-LWELPVYTDEVSYKFSE 242

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 34/262 (12%), Positives = 82/262 (31%), Gaps = 57/262 (21%)

Query: 183 LANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242
              + +    ++    +T          L+ ++     +++ Q   SL  +   + LK  
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMN 302
           +  +N+++ +++    LT    +L  L ++ +                    +L+ I   
Sbjct: 69  HLSHNQIS-DLSPLKDLT----KLEELSVNRN-----------------RLKNLNGIP-- 104

Query: 303 GEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI- 361
                     +A L  LFL N+ +       +   + L  L + NN         +  I 
Sbjct: 105 ----------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNK--------LKSIV 144

Query: 362 ----LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSL 417
               L  L   ++  N +  +       +K +  +DL+      E  +Y     +     
Sbjct: 145 MLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

Query: 418 ALSNNNLQGHMFSRNFNLTNLK 439
                 +  +  S   +  +  
Sbjct: 203 DPDGRWISPYYISNGGSYVDGC 224

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 373 NALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMF 429
           N +    P +F   K L+ +DLSNN ++ E+      G  +LNSL L  N +      +F
Sbjct: 42  NTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100

Query: 430 SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489
                L +L+ LLL  N+       +     +L  L L +N L          L  +Q +
Sbjct: 101 EG---LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

Query: 490 IMPNN 494
            +  N
Sbjct: 158 HLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 417 LALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGK 475
           + L  N ++  +    F     L+ + L  N+     P +     SL  L L  N ++  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 476 IPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQ 534
                  L  LQ +++  N +   + V+ F  L  L +L + DN +   +   TFS L+ 
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRA 153

Query: 535 IESLDLSYN 543
           I+++ L+ N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ----GHMFSRNFNLTNLKWLLLEG 445
             + L  N +   IP         L  + LSNN +        F     L +L  L+L G
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQG---LRSLNSLVLYG 89

Query: 446 NRFVGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQYIIMPNNHLEGPIPVE 503
           N+   E+P+SL     SL+ L LN N ++  +      +L  L  + + +N L+      
Sbjct: 90  NKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 504 FCQLDLLQILDISDN 518
           F  L  +Q + ++ N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 335 HPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMKFLQILD 393
            P+++LR +D+SNN     +  +    L SL S  +  N +   +P S F  +  LQ+L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 394 LSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGN 446
           L+ N +   +         NLN L+L +N LQ         L  ++ + L  N
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 436 TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495
             +  + LE N      P + S    L  + L+NN +S   P     L  L  +++  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 496 LEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545
           +   +P   F  L  LQ+L ++ N I+  L    F +L  +  L L  NKL
Sbjct: 92  ITE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 133 SMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW-CLANMTSLRI 191
               L+ + LS + +   +          L  L  L +  N +   LP      + SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 192 LDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ 225
           L ++ N++   +       L ++ +L L DN  Q
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMKFLQILDLSNNHLTG 401
           + +  N  +  +P         L   ++S N +   +   +F  ++ L  L L  N +T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 402 EIPEYLAVGCVNLNSLALSNNNLQG---HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK 458
           E+P+ L  G  +L  L L+ N +       F    +L NL  L L  N+       + S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 459 CSSLEGLYLNNN 470
             +++ ++L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 29/206 (14%), Positives = 57/206 (27%), Gaps = 63/206 (30%)

Query: 21  SKLLQSM--GSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSI 78
            K L  +      ++  + L  N    I          +  L  + L  +      +  +
Sbjct: 20  GKGLTEIPTNLPETITEIRLEQNTIKVIPPGA---FSPYKKLRRIDLSNNQ-----ISEL 71

Query: 79  ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLK 138
           A                           F+ L                          L 
Sbjct: 72  AP----------------DA--------FQGLRS------------------------LN 83

Query: 139 YLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQ 198
            L L G+ +      + +     L  LQ L +  N +         ++ +L +L +  N+
Sbjct: 84  SLVLYGNKITELPKSLFE----GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139

Query: 199 LTGSISSSPLVHLTSIEMLILSDNHF 224
           L  +I+      L +I+ + L+ N F
Sbjct: 140 LQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 16/192 (8%)

Query: 57  FTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMS 116
              ++++ L  S + +S L  I S    L+NLS+    ++  +         +L  L++S
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLS 150

Query: 117 FAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLV-----HLQELRMA 171
                 +   LQ +  S   L  L+LS            ++ +   V      + +L ++
Sbjct: 151 GCS-GFSEFALQTLLSSCSRLDELNLSW------CFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 172 DNDLR---GSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPI 228
                     L   +    +L  LD+S + +  +        L  ++ L LS  +  IP 
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263

Query: 229 SLEPLFNHSRLK 240
           +L  L     LK
Sbjct: 264 TLLELGEIPTLK 275

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 63.0 bits (153), Expect = 9e-11
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 24/212 (11%)

Query: 21  SKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIAS 80
            + L    S   +  +DLS +      +     L   + L+ L+L+   L   ++ ++A 
Sbjct: 83  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNLSLEGLRLSDPIVNTLAK 140

Query: 81  LFPSLKNLSISYCE------VNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESM 134
              +L  L++S C       +  +L          L+ L++S+            +    
Sbjct: 141 N-SNLVRLNLSGCSGFSEFALQTLLSS-----CSRLDELNLSWCFDFTEKHVQVAVAHVS 194

Query: 135 PSLKYLSLSGSILGTNSSRILDQGLCSLV----HLQELRMAD-NDLRGSLPWCLANMTSL 189
            ++  L+LSG         +    L +LV    +L  L ++D   L+         +  L
Sbjct: 195 ETITQLNLSGY-----RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249

Query: 190 RILDVSFNQLTGSISSSPLVHLTSIEMLILSD 221
           + L +S        +   L  + +++ L +  
Sbjct: 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 17/167 (10%)

Query: 4   LRKLKSFGLSGV-GIRDGSKLLQSMGSF-PSLNTLDLSY-NNFTDIAITTTQELHNFTNL 60
              L    LSG  G  + +  LQ++ S    L+ L+LS+  +FT+  +      H    +
Sbjct: 141 NSNLVRLNLSGCSGFSEFA--LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETI 197

Query: 61  EYLTLDESSLHIS--LLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSF---KSLEHLHM 115
             L L     ++    L ++    P+L +L +S   +   L+   F  F     L+HL +
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM---LKNDCFQEFFQLNYLQHLSL 254

Query: 116 SFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSL 162
           S     +  + L++    +P+LK L + G I+   + ++L + L  L
Sbjct: 255 SRCYDIIPETLLELG--EIPTLKTLQVFG-IVPDGTLQLLKEALPHL 298

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 41/209 (19%), Positives = 73/209 (34%), Gaps = 14/209 (6%)

Query: 291 LEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSN-NN 349
           ++ +DLS+  +       +L   +KL+ L L    +  P    +  +  L  L++S  + 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 350 FQGHMPVEIGDILPSLFSFNIS------TNALHGSIPSSFGNMKFLQILDLS--NNHLTG 401
           F       +      L   N+S         +  ++       + +  L+LS    +L  
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH---VSETITQLNLSGYRKNLQK 211

Query: 402 EIPEYLAVGCVNLNSLALSN-NNLQGHMFSRNFNLTNLKWLLLEGNRFVGEI-PQSLSKC 459
                L   C NL  L LS+   L+   F   F L  L+ L L     +       L + 
Sbjct: 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271

Query: 460 SSLEGLYLNNNSLSGKIPRWLGNLTRLQY 488
            +L+ L +      G +      L  LQ 
Sbjct: 272 PTLKTLQVFGIVPDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 33/233 (14%)

Query: 341 RFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLT 400
           + LD++  N    +   +  +   + +F    + +   +   F   + +Q +DLSN+ + 
Sbjct: 50  QTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIE 106

Query: 401 GEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGE--IPQSLSK 458
                 +   C  L +L+L    L   + +     +NL  L L G     E  +   LS 
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166

Query: 459 CSSLEGLYLNNNSLSGKIPRWLGNLT--RLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 516
           CS L+ L L           W  + T   +Q  +   +               +  L++S
Sbjct: 167 CSRLDELNL----------SWCFDFTEKHVQVAVAHVSE-------------TITQLNLS 203

Query: 517 D--NNISGRLIPSTFSNLKQIESLDLSY-NKLNGKMPHQLVELKTLEVFSVAY 566
               N+    + +       +  LDLS    L      +  +L  L+  S++ 
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 431 RNFNLTNLKWLLLEGNRF-VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489
           RN   +++K L+L+ +R   G++     +   LE L   N  L+  I   L  L +L+ +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 490 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543
            + +N + G + V   +   L  L++S N I           L+ ++SLDL   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 127 LQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANM 186
           L++   +   +K L L  S   +N  ++          L+ L   +  L  S+   L  +
Sbjct: 9   LELRNRTPSDVKELVLDNS--RSNEGKLEG-LTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
             L+ L++S N+++            ++  L LS N  +   ++EPL     LK     N
Sbjct: 64  NKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 247 NEL 249
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 389 LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNR 447
           ++ L L N+       E L      L  L+  N  L       N   L  LK L L  NR
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLELSDNR 75

Query: 448 FVGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTRLQYIIMPNN 494
             G +     KC +L  L L+ N +        L  L  L+ + + N 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 130 IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSL 189
           + +    L++LS     L    + I    L  L  L++L ++DN + G L        +L
Sbjct: 37  LTDEFEELEFLSTINVGL----TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 190 RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYA 244
             L++S N++    +  PL  L +++ L L +      ++        R  +F  
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EVTNLN---DYRENVFKL 138

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 12/150 (8%)

Query: 47  AITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPS 106
            I         ++++ L LD S  +   L+ +   F  L+ LS     +  +      P 
Sbjct: 6   RIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPK 62

Query: 107 FKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQ 166
              L+ L +S   +   +  L+++ E  P+L +L+LSG+ +       ++  L  L +L+
Sbjct: 63  LNKLKKLELSDNRV---SGGLEVLAEKCPNLTHLNLSGNKI--KDLSTIEP-LKKLENLK 116

Query: 167 ELRMADN---DLRGSLPWCLANMTSLRILD 193
            L + +    +L          +  L  LD
Sbjct: 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 377 GSIPSSFGNMKFLQILDLSNNHLT--GEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFN 434
           G +       + L+ L   N  LT    +P+        L  L LS+N + G +      
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLTSIANLPK-----LNKLKKLELSDNRVSGGLEVLAEK 86

Query: 435 LTNLKWLLLEGNRFVG-EIPQSLSKCSSLEGLYLNNN 470
             NL  L L GN+       + L K  +L+ L L N 
Sbjct: 87  CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 6   KLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTL 65
            +K   L      +G KL      F  L  L       T IA      L     L+ L L
Sbjct: 18  DVKELVLDNSRSNEG-KLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLEL 71

Query: 66  DESSLHIS-LLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT 124
             S   +S  L+ +A   P+L +L++S  ++  +   +     ++L+ L +    +    
Sbjct: 72  --SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 125 SFLQIIGESMPSLKYL 140
            + + + + +P L YL
Sbjct: 130 DYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 26/114 (22%), Positives = 35/114 (30%), Gaps = 6/114 (5%)

Query: 311 ENNAKLETLFLINDSIG-GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369
              + ++ L L N     G           L FL   N        +     L  L    
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLE 70

Query: 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTG-EIPEYLAVGCVNLNSLALSNN 422
           +S N + G +         L  L+LS N +      E L     NL SL L N 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
             +L+      VG+      + ++     L  L+LS N  +              NL +L
Sbjct: 41  FEELEFLSTINVGLTS----IANLPKLNKLKKLELSDNRVSGGL---EVLAEKCPNLTHL 93

Query: 64  TLDESSLHISLLQSIASL--FPSLKNLSISYCEV 95
            L  S   I  L +I  L    +LK+L +  CEV
Sbjct: 94  NL--SGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE 402
           L ++NN F       I   LP L   N S N +      +F     +  + L++N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 403 IPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKC 459
           +   +  G  +L +L L +N +       F     L++++ L L  N+     P +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 460 SSLEGLYLNNN 470
            SL  L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 27/155 (17%)

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFV 449
             L L+NN  T      +      L  +  SNN +                  +E   F 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----------------IEEGAF- 77

Query: 450 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLD 508
               +  S    +  + L +N L     +    L  L+ +++ +N +   +  + F  L 
Sbjct: 78  ----EGASG---VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLS 129

Query: 509 LLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543
            +++L + DN I+  + P  F  L  + +L+L  N
Sbjct: 130 SVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 436 TNLKWLLLEGNRFVGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN 494
                L L  N F       +  K   L  +  +NN ++          + +  I++ +N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 495 HLEGPIPVE-FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545
            LE  +  + F  L+ L+ L +  N I+  +   +F  L  +  L L  N++
Sbjct: 92  RLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW-CLANMTSLR 190
           E    +  + L+ + L     ++       L  L+ L +  N +   +       ++S+R
Sbjct: 78  EGASGVNEILLTSNRLENVQHKMFK----GLESLKTLMLRSNRIT-CVGNDSFIGLSSVR 132

Query: 191 ILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ 225
           +L +  NQ+T +++      L S+  L L  N F 
Sbjct: 133 LLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 13/91 (14%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 161 SLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILS 220
            L  L+++  ++N +           + +  + ++ N+L  ++       L S++ L+L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 221 DNHFQIPISLEP-LFNH-SRLKIFYADNNEL 249
            N       +    F   S +++    +N++
Sbjct: 114 SNRIT---CVGNDSFIGLSSVRLLSLYDNQI 141

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 434 NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN 493
           N    + L L G + +  I    +     + +  ++N +  K+      L RL+ +++ N
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543
           N +          L  L  L +++N++         ++LK +  L +  N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 381 SSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLK 439
           + + N    + LDL    +   I E L       +++  S+N ++       F  L  LK
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 440 WLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTRLQYIIMPNN 494
            LL+  NR              L  L L NNSL        L +L  L Y+ +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 19/161 (11%)

Query: 36  LDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEV 95
           + L+        I    +  N      L L      I +++++ +       +  S    
Sbjct: 2   VKLTAEL-----IEQAAQYTNAVRDRELDLR--GYKIPVIENLGATLDQFDAIDFSD--- 51

Query: 96  NGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRIL 155
           N + +  GFP  + L+ L ++   I       + + +++P L  L L+ + L       L
Sbjct: 52  NEIRKLDGFPLLRRLKTLLVNNNRI---CRIGEGLDQALPDLTELILTNNSL--VELGDL 106

Query: 156 DQGLCSLVHLQELRMADN---DLRGSLPWCLANMTSLRILD 193
           D  L SL  L  L +  N   + +    + +  +  +R+LD
Sbjct: 107 DP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 96  NGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRIL 155
             + +   + +      L +    I      ++ +G ++     +  S      N  R L
Sbjct: 7   ELIEQAAQYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSD-----NEIRKL 57

Query: 156 DQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIE 215
           D G   L  L+ L + +N +          +  L  L ++ N L       PL  L S+ 
Sbjct: 58  D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 216 MLILSDNHFQIPISLEPLFNHSRLKIFYA 244
            L +  N    P++ +    H RL + Y 
Sbjct: 117 YLCILRN----PVTNKK---HYRLYVIYK 138

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
            +    + L L G         +++    +L     +  +DN++R  L      +  L+ 
Sbjct: 16  TNAVRDRELDLRG-----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 68

Query: 192 LDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
           L V+ N++   I       L  +  LIL++N       L+PL +   L       N +
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 310 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369
             N  +   L L    I     L      +   +D S+N  +    ++   +L  L +  
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLT--GEIPEYLAVGCVNLNSLALSNNNLQGH 427
           ++ N +          +  L  L L+NN L   G++ + LA    +L  L +  N +   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 428 MFSRNFNLTNLKWL 441
              R + +  +  +
Sbjct: 129 KHYRLYVIYKVPQV 142

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 480 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLD 539
             N  R + + +    +   I      LD    +D SDN I  +L    F  L+++++L 
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL--DGFPLLRRLKTLL 70

Query: 540 LSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
           ++ N++          L  L    +  N+L 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 9/140 (6%)

Query: 1   YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNL 60
           Y    + +   L G  I     L  +       + +D S N      I           L
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGAT---LDQFDAIDFSDNE-----IRKLDGFPLLRRL 66

Query: 61  EYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPI 120
           + L ++ + +   + + +    P L  L ++   +  +       S KSL +L +   P+
Sbjct: 67  KTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

Query: 121 ALNTSFLQIIGESMPSLKYL 140
                +   +   +P ++ L
Sbjct: 126 TNKKHYRLYVIYKVPQVRVL 145

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 7/104 (6%)

Query: 372 TNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL---QGHM 428
           T              + L  L + N      +      G   L +L +  + L       
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 429 FSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 472
           F        L  L L  N     +     +  SL+ L L+ N L
Sbjct: 76  FH---FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 362 LPSLFSFNISTNALHGSIPS-SFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS 420
             +L    I        +       +  L+ L +  + L   +          L+ L LS
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 421 NNNLQGHMFSRNFNLTNLKWLLLEGNRFV 449
            N L+  +  +     +L+ L+L GN   
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 157 QGLCSLVHLQELRMADNDLRGSLPW-CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIE 215
             L    +L EL + +      L    L  +  LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 216 MLILSDNHFQIPISLEP-LFNHSRLKIFYADNNELN 250
            L LS N  +   SL         L+      N L+
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 500 IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL 559
                   + L  L I +      L       L ++ +L +  + L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 560 EVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLC 595
              ++++N L   +   T Q  +  E    GN   C
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 411 CVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLN 468
               + L  + +     +   +     NL  L +E  + +  +  + L     L  L + 
Sbjct: 7   PHGSSGLRCTRDGALDSL--HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518
            + L    P       RL  + +  N LE  +  +  Q   LQ L +S N
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 133 SMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRIL 192
              +L  L +       +   +  + L  L  L+ L +  + LR   P        L  L
Sbjct: 29  GAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 193 DVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ 225
           ++SFN L  S+S   +  L S++ L+LS N   
Sbjct: 86  NLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 2e-08
 Identities = 72/497 (14%), Positives = 139/497 (27%), Gaps = 156/497 (31%)

Query: 3   GLRKLKS------FGLSGVG--------IRDGSKLLQ--------SMGSFPS-------L 33
            L +L+        G+ G G                +        ++ +  S       L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 34  NTL----DLSYNNFTDIAITTTQELHNFTN-LEYLTLDESSLHISLL-------QSIASL 81
             L    D ++ + +D +      +H+    L  L L        LL           + 
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNA 261

Query: 82  F-PSLKNLSIS-YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKY 139
           F  S K L  + + +V   L      +  SL+H  M+  P  + +  L+ +      L  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 140 LSLSGSILGTNSSRILDQGLCSLV--HLQE-LRMADNDLRGSLPWCLANMTSL-RILDVS 195
             L+ +               S++   +++ L   DN       W   N   L  I++ S
Sbjct: 321 EVLTTNPR-----------RLSIIAESIRDGLATWDN-------WKHVNCDKLTTIIESS 362

Query: 196 FNQLTGSISSSPLVHLTSIEML-ILSDNHFQIPIS-----------------LEPLFNHS 237
            N L       P  +    + L +   +   IP                   +  L  +S
Sbjct: 363 LNVL------EPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 238 RLKIFYADNNELNAEITQSHSL------TAPN-FQLNRLLLSS--------------SYG 276
            ++       E    I    S+         N + L+R ++                 Y 
Sbjct: 416 LVE---KQPKESTISI---PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 277 DGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENN---AKLETLFLINDSIGGPFRLP 333
           D + +    +H  ++E     H +    F    L+      K     + +DS        
Sbjct: 470 DQYFYSHIGHHLKNIE-----HPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASGS 519

Query: 334 IHPHRRLRFLDVSNNNFQGHMPVE-------IGDILPSLFSFNISTNALHGSIPSSFGNM 386
           I          +    ++ ++          +  IL   F   I  N +           
Sbjct: 520 ILN----TLQQL--KFYKPYICDNDPKYERLVNAILD--FLPKIEENLICS--------- 562

Query: 387 KFLQILDLSNNHLTGEI 403
           K+  +L ++       I
Sbjct: 563 KYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 57/461 (12%), Positives = 126/461 (27%), Gaps = 113/461 (24%)

Query: 263 NFQLNRLLLSSSYGDGFIFPKFLYH-QHDLEFVD----LSHIKMNGEFPTWLLENNAKLE 317
           +F+         Y D  I   F      + +  D       I    E    ++  +A   
Sbjct: 8   DFETGEHQYQ--YKD--ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 318 TLFLINDSIGGPFRLPIHPHRRL-RFL-DVSNNNFQGHM-PVEIGDILPSLF--SFNIST 372
           TL L        + L       + +F+ +V   N++  M P++     PS+    +    
Sbjct: 64  TLRLF-------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 373 NALHGSIPSSFGNM------KFLQILDLSNNHLTGEIPE-YLAV----GC---VNLNSLA 418
           + L+      F          +L++       L    P   + +    G      +    
Sbjct: 117 DRLYND-NQVFAKYNVSRLQPYLKL----RQALLELRPAKNVLIDGVLGSGKTW-VALDV 170

Query: 419 LSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI-P 477
             +  +Q  M  + F      WL             +L  C+S E +      L  +I P
Sbjct: 171 CLSYKVQCKMDFKIF------WL-------------NLKNCNSPETVLEMLQKLLYQIDP 211

Query: 478 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL---LQILD-ISDN------NISGR-LIP 526
            W         I +  + ++  +            L +L  + +       N+S + L+ 
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 527 STFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 586
           + F  +    S   + +         L   +   +     +    ++P            
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT------- 324

Query: 587 SYEGNIFLCGLPLPICISPATMPE--------ASIGNEQDDNLIDMDSFFITFTTSYI-- 636
                      P  + I   ++ +          +  ++   +I+     +         
Sbjct: 325 ---------TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES---SLNVLEPAEYR 372

Query: 637 -----IVIF--GIVI---VLYVNSYWRRRWFYFVEMWITSC 667
                + +F     I   +L +   W       V + +   
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSL--IWFDVIKSDVMVVVNKL 411

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 90/574 (15%), Positives = 167/574 (29%), Gaps = 177/574 (30%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNL-S 89
           PS+ T    Y    D      Q               +  ++S LQ    L  +L  L  
Sbjct: 105 PSMMTR--MYIEQRDRLYNDNQVF-------------AKYNVSRLQPYLKLRQALLELRP 149

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMP------SLKYLSLS 143
                ++GVL G G    K+        A     +  +Q     M       +LK  +  
Sbjct: 150 AKNVLIDGVL-GSG----KT------WVALDVCLSYKVQ---CKMDFKIFWLNLKNCNSP 195

Query: 144 GSILG--TNSSRILDQGLCSLV-HLQELRMADNDLRGSLPWCLANM---TSLRILD-V-- 194
            ++L         +D    S   H   +++  + ++  L   L +      L +L  V  
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 195 -----SFN------------QLTGSISSS-----PLVH----LTSIEML-----ILSDNH 223
                +FN            Q+T  +S++      L H    LT  E+       L    
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 224 FQIP---ISLEPLF----------NHSRLKIF-YADNNELNAEITQSHSLTAPNFQLNRL 269
             +P   ++  P              +    + + + ++L   I    SL      L   
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII--ESSLN----VLEPA 369

Query: 270 LLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLE---NNAKLETLFLINDSI 326
                +    +FP              +HI      PT LL     +     + ++ + +
Sbjct: 370 EYRKMFDRLSVFPP-----------S-AHI------PTILLSLIWFDVIKSDVMVVVNKL 411

Query: 327 GGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 386
                     H+    ++           + I  I   L     +  ALH SI   +   
Sbjct: 412 ----------HKY-SLVEKQPKEST----ISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 387 KFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGN 446
           K     DL   +L      ++       + L    +  +  +F   F   + ++L     
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIG------HHLKNIEHPERMTLFRMVF--LDFRFL---EQ 505

Query: 447 RFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN-LTRL----QYIIMPNNHLEGPIP 501
           +                   + ++S +      + N L +L     YI   +   E  + 
Sbjct: 506 K-------------------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 502 VEFCQLDLLQILDISDNNISGRLIPSTFSNLKQI 535
                  +L  L      I   LI S +++L +I
Sbjct: 547 ------AILDFL----PKIEENLICSKYTDLLRI 570

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 372 TNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ----GH 427
            N +    P  F ++  L+ L L +N L   +P  +      L  L L  N L       
Sbjct: 49  DNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSA- 106

Query: 428 MFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 487
           +F R   L +LK L +  N+   E+P+ + + + L  L L+ N L          L+ L 
Sbjct: 107 VFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 488 YIIMPNN 494
           +  +  N
Sbjct: 163 HAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 20/138 (14%)

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ----GHMFSRNFNLTNLKWLLLEG 445
           QIL L +N +T ++   +    +NL  L L +N L     G +F     LT L  L L  
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVG-VFDS---LTQLTVLDLGT 97

Query: 446 NRFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI 500
           N+        L      +   L+ L++  N L+ ++PR +  LT L ++ +  N L+   
Sbjct: 98  NQL-----TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151

Query: 501 PVEFCQLDLLQILDISDN 518
              F +L  L    +  N
Sbjct: 152 HGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 11/117 (9%)

Query: 463 EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNIS 521
           + LYL++N ++   P    +L  L+ + + +N L   P+ V F  L  L +LD+  N ++
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGTNQLT 101

Query: 522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPH---QLVELKTLEVFSVAYNNLSGEIPE 575
             L  + F  L  ++ L +  NKL  ++P    +L  L  L +      N    IP 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL----DQNQLKSIPH 152

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 378 SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFN 434
            +P    N K L ++DLSNN ++  +          L +L LS N L+      F     
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--- 100

Query: 435 LTNLKWLLLEGNRFVGEIPQ-SLSKCSSLEGLYLNNN 470
           L +L+ L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 436 TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495
            ++  L L+GN+F   +P+ LS    L  + L+NN +S    +   N+T+L  +I+  N 
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 496 LEGPIPVE-FCQLDLLQILDISDNNISGRLIP-STFSNLKQIESLDLSYN 543
           L   IP   F  L  L++L +  N+IS   +P   F++L  +  L +  N
Sbjct: 90  LRC-IPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 500 IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL 559
           +P E      L ++D+S+N IS  L   +FSN+ Q+ +L LSYN+L    P     LK+L
Sbjct: 46  VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104

Query: 560 EVFSVAYNNLSGEIPE 575
            + S+  N++S  +PE
Sbjct: 105 RLLSLHGNDIS-VVPE 119

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL 510
           ++  +LS   + + L L+ N++  KI   L  +  L+ + +  N ++  I       D L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTL 95

Query: 511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG-KMPHQLVELKTLEVFSVAYNNL 569
           + L IS N I+  L  S    L  +  L +S NK+       +L  L  LE   +A N L
Sbjct: 96  EELWISYNQIA-SL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

Query: 570 SGEIPE 575
             +  E
Sbjct: 153 YNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 12/124 (9%)

Query: 21  SKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIAS 80
            K+  ++ +  +   L LS NN   I       L    NL  L+L      I  ++++ +
Sbjct: 38  EKMDATLSTLKACKHLALSTNNIEKI-----SSLSGMENLRILSL--GRNLIKKIENLDA 90

Query: 81  LFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYL 140
           +  +L+ L ISY   N +    G     +L  L+MS   I       ++   ++  L+ L
Sbjct: 91  VADTLEELWISY---NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL--AALDKLEDL 145

Query: 141 SLSG 144
            L+G
Sbjct: 146 LLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 30/149 (20%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 112 HLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMA 171
            LH    PI    + L     ++ + K+L+LS + +     +I    L  + +L+ L + 
Sbjct: 29  ELHGMIPPIEKMDATL----STLKACKHLALSTNNI----EKI--SSLSGMENLRILSLG 78

Query: 172 DNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLE 231
            N ++  +    A   +L  L +S+NQ+    S S +  L ++ +L +S+N       ++
Sbjct: 79  RNLIK-KIENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 232 PLFNHSRLKIFYADNNELNAEITQSHSLT 260
            L    +L+      N L  +  ++++ +
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 43/202 (21%)

Query: 46  IAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFP 105
           I I   ++    T  E + L      I  + +  S   + K+L++S              
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----------- 59

Query: 106 SFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHL 165
             + +  L                    M +L+ LSL       N  + ++        L
Sbjct: 60  -IEKISSL------------------SGMENLRILSLGR-----NLIKKIENLDAVADTL 95

Query: 166 QELRMADN---DLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDN 222
           +EL ++ N    L G     +  + +LR+L +S N++T       L  L  +E L+L+ N
Sbjct: 96  EELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

Query: 223 HFQIPISLEPLFNHSRLKIFYA 244
                       +  R+++   
Sbjct: 151 PLYNDYKENNATSEYRIEVVKR 172

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 19/115 (16%)

Query: 384 GNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN------NLQGHMFSRNFNLTN 437
             M+ L+IL L  N +  +I E L      L  L +S N       ++         L N
Sbjct: 67  SGMENLRILSLGRNLIK-KI-ENLDAVADTLEELWISYNQIASLSGIE--------KLVN 116

Query: 438 LKWLLLEGNRF--VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII 490
           L+ L +  N+    GEI   L+    LE L L  N L                ++
Sbjct: 117 LRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 46/373 (12%), Positives = 108/373 (28%), Gaps = 69/373 (18%)

Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLV-HLQELRMADNDLRGSLPWCLANM---- 186
                +  L LS + L + S+  L Q   +    +  L ++ N L       L  +    
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 187 -TSLRILDVSFNQLTG----SISSSPLVHLTSIEMLILSDNHFQ----IPISLEPLFNHS 237
             ++  L++S N L+      +  +      +I +L L  N F                +
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 238 RLKIFYADNNELNAEITQ--SHSLTAPNFQLNRLLLSS-SYGDGFIFPKFLYHQHDLEFV 294
            +       N+L  + +      L A    +N L L   +                    
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC-------------A 185

Query: 295 DLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPI-----HPHRRLRFLDVSNNN 349
           +L+           L    A + +L L  + +G      +          +  L++  N 
Sbjct: 186 ELAKF---------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236

Query: 350 FQGHMPVEIGDIL---PSLFSFNISTNALHG-------SIPSSFGNMKFLQILDLSNNHL 399
             G     +  +      L +  +  + +         ++ ++F N++ + ++D +   +
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

Query: 400 TGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKC 459
                  ++      N +   +            +L N   +  + +       + L+  
Sbjct: 297 HPSHSIPIS------NLIRELSGKAD------VPSLLNQCLIFAQKH---QTNIEDLNIP 341

Query: 460 SSLEGLYLNNNSL 472
             L         L
Sbjct: 342 DELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 46/273 (16%), Positives = 89/273 (32%), Gaps = 58/273 (21%)

Query: 309 LLENNAKLETLFLINDSIGGP-----FRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILP 363
                A + +L L  +S+G        ++       +  L++S N        E+   L 
Sbjct: 46  FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105

Query: 364 S----LFSFNISTNALHGSIPSSFGNM-----KFLQILDLSNNHLTGE----IPEYLAVG 410
           +    +   ++  N       S F          +  L+L  N L  +    + + LA  
Sbjct: 106 AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165

Query: 411 CVNLNSLALSNNNLQ-------GHMFSRNFNLTNLKWLLLEGNRF----VGEIPQSLSKC 459
             N+NSL L  NNL              +    ++  L L  N        E+    S  
Sbjct: 166 PANVNSLNLRGNNLASKNCAELAKFL-ASIP-ASVTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 460 -SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518
            + +  L L  N L G       +L  L+ +     HL              Q + +  +
Sbjct: 224 PNHVVSLNLCLNCLHGP------SLENLKLLKDSLKHL--------------QTVYLDYD 263

Query: 519 NISG------RLIPSTFSNLKQIESLDLSYNKL 545
            +        + + + F N+++I  +D +  ++
Sbjct: 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 37/282 (13%), Positives = 84/282 (29%), Gaps = 47/282 (16%)

Query: 309 LLENNAKLETLFLINDSIGGPFRLPI-----HPHRRLRFLDVSNNNFQGHMPVEIGDIL- 362
           L    A + +L L  + +       +          +  LD+  N+F      E      
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 363 ---PSLFSFNISTNALHGSIPSSFGNM-----KFLQILDLSNNHLTGE----IPEYLAVG 410
               S+ S N+  N L          +       +  L+L  N+L  +    + ++LA  
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 411 CVNLNSLALSNNNLQ-------GHMFSRNFNLTNLKWLLLEGNRF----VGEIPQSLSKC 459
             ++ SL LS N L         ++FS      ++  L L  N      +  +       
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSI--PNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 460 SSLEGLYLNNNSLSGK-------IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL----- 507
             L+ +YL+ + +          +     N+ ++  +      +     +    L     
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS 312

Query: 508 DLLQILDISDNNI----SGRLIPSTFSNLKQIESLDLSYNKL 545
               +  + +  +      +      +   ++     +   L
Sbjct: 313 GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 28/220 (12%)

Query: 5   RKLKSFGLSGVGIRD-GSKLLQSMGSFP--SLNTLDLSYNNFTDIAITTTQEL-----HN 56
             + S  LSG  +    S  L    +    ++  LDL +N+F+  +     E      + 
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS---SEFKQAFSNL 136

Query: 57  FTNLEYLTLDESSLHISLLQSIASLFP----SLKNLSISYCEV--NGVLR-GQGFPSF-K 108
             ++  L L  + L I     +  +      ++ +L++    +         +   S   
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 109 SLEHLHMSFAPIALN--TSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQ 166
           S+  L +S   + L        I       +  L+L  + L   S   L     SL HLQ
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 167 ELRMADNDLRGSLPWC-------LANMTSLRILDVSFNQL 199
            + +  + ++               N+  + ++D +  ++
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 46/265 (17%), Positives = 96/265 (36%), Gaps = 30/265 (11%)

Query: 14  GVGIRDGSKLLQSMGSFP-SLNTLDLSYNNFTDIAITTTQE--LHNFTNLEYLTLDESSL 70
            + +  GS  ++   S P  + +LDLS NN   I+     +   +   ++  L L  +SL
Sbjct: 4   KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL 63

Query: 71  HISLLQSIASLFPS----LKNLSISYCEVN---GVLRGQGFPSFK-SLEHLHMSFAPIAL 122
                  +  +  +    + +L++S   ++        +   +   ++  L + +     
Sbjct: 64  GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-- 121

Query: 123 NTSFLQIIGESM----PSLKYLSLSGSILGTNSSRILDQGLCSL-VHLQELRMADNDLRG 177
           ++       ++      S+  L+L G+ LG  SS  L Q L ++  ++  L +  N+L  
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 178 SLPWCLANM-----TSLRILDVSFNQLTGS----ISSSPLVHLTSIEMLILSDNHFQ--- 225
                LA        S+  LD+S N L       ++         +  L L  N      
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 226 IPISLEPLFNHSRLKIFYADNNELN 250
           +        +   L+  Y D + + 
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVK 266

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 40/221 (18%)

Query: 385 NMKFLQILDLSNNHLTGE----IPEYLAVGCVNLNSLALSNNNLQ---GHMFSRNFNLTN 437
               +  L+LS N L  +    + + LA    N+ SL LS N L         +      
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 438 --LKWLLLEGNRF----VGEIPQSLSKC-SSLEGLYLNNNSLSGKIPRWLGNL-----TR 485
             +  L L  N F      E  Q+ S   +S+  L L  N L  K    L  +       
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 486 LQYIIMPNNHLEGPIPVEFCQL---------DLLQILDISDNNISGR----LIPSTFSNL 532
           +  + +  N+L      + C             +  LD+S N +  +    L     S  
Sbjct: 169 VNSLNLRGNNLA----SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 533 KQIESLDLSYNKLNGKMPHQLVEL----KTLEVFSVAYNNL 569
             + SL+L  N L+G     L  L    K L+   + Y+ +
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 22/116 (18%)

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG---HMFSRNFNLTNLKWLLLEGN 446
             L L++N L     + L     +L  L L  N L G   + F      ++++ L L  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 447 RFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWLG---NLTRLQYIIMPNN 494
           +      + +S         L+ L L +N +S  +    G   +L  L  + + +N
Sbjct: 89  KI-----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMKFLQILDLSNNHLTG 401
           L +++N         +   LP L    +  N L   I  + F     +Q L L  N +  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 402 EIPEYLAVGCVNLNSLALSNNNLQGHM---FSRNFNLTNLKWLLLEGN 446
           EI   + +G   L +L L +N +   M   F    +L +L  L L  N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLTSLNLASN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 12/150 (8%)

Query: 47  AITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPS 106
            I           +  L LD    +   ++ + + F +L+ LS+    +  V      P 
Sbjct: 13  RIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPK 69

Query: 107 FKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQ 166
              L+ L +S   I      L ++ E +P+L +L+LSG+ L       L+  L  L  L+
Sbjct: 70  LPKLKKLELSENRI---FGGLDMLAEKLPNLTHLNLSGNKL--KDISTLEP-LKKLECLK 123

Query: 167 ELRMADN---DLRGSLPWCLANMTSLRILD 193
            L + +    +L          +  L  LD
Sbjct: 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 389 LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNR 447
           ++ L L N        E L    VNL  L+L N  L       N   L  LK L L  NR
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENR 82

Query: 448 FVGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTRLQYIIMPNN 494
             G +     K  +L  L L+ N L        L  L  L+ + + N 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 127 LQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANM 186
           L++   +  +++ L L      +N  +I        V+L+ L + +  L  S+   L  +
Sbjct: 16  LELRNRTPAAVRELVLDNC--KSNDGKIEG-LTAEFVNLEFLSLINVGLI-SVS-NLPKL 70

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
             L+ L++S N++           L ++  L LS N  +   +LEPL     LK     N
Sbjct: 71  PKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 247 NEL 249
            E+
Sbjct: 130 CEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 130 IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSL 189
           +     +L++LSL    L      +    L  L  L++L +++N + G L      + +L
Sbjct: 44  LTAEFVNLEFLSLINVGL----ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 190 RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
             L++S N+L    +  PL  L  ++ L L +      ++        R  +F 
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLN---DYRESVFK 144

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 28/114 (24%), Positives = 37/114 (32%), Gaps = 8/114 (7%)

Query: 312 NNAKLETLFLINDSIGGPFRLPIHPHRR-LRFLDVSNNNFQGHMPVEIGDILPSLFSFNI 370
             A +  L L N          +      L FL + N        V     LP L    +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 371 STNALHGSIPSSFGNMKFLQILDLSNNHLT--GEIPEYLAVGCVNLNSLALSNN 422
           S N + G +      +  L  L+LS N L     + E L      L SL L N 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
              L+   L  VG+      + ++   P L  L+LS N                 NL +L
Sbjct: 48  FVNLEFLSLINVGLIS----VSNLPKLPKLKKLELSENRIFGGL---DMLAEKLPNLTHL 100

Query: 64  TLDESSLHISLLQSIASL--FPSLKNLSISYCEV 95
            L  S   +  + ++  L     LK+L +  CEV
Sbjct: 101 NL--SGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 12/159 (7%)

Query: 317 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALH 376
           E L L +  +            +L +L++  N  Q  +   + D L  L +  ++ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 377 GSIPSS-FGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ----GHMFSR 431
            S+P   F ++  L  L L  N L   +P  +      L  L L+ N LQ    G  F +
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAG-AFDK 153

Query: 432 NFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN 470
              LTNL+ L L  N+       +  +   L+ + L  N
Sbjct: 154 ---LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 51/208 (24%), Positives = 78/208 (37%), Gaps = 43/208 (20%)

Query: 21  SKLLQSMGSFPSLNT--LDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSI 78
            K L S+ S    +T  LDL       ++  T       T L +L LD +      LQ++
Sbjct: 23  GKSLDSVPSGIPADTEKLDLQSTGLATLSDAT---FRGLTKLTWLNLDYNQ-----LQTL 74

Query: 79  -ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSL 137
            A +F  L  L       N            SL                   + + +  L
Sbjct: 75  SAGVFDDLTELGTLGLANN---------QLASLPLG----------------VFDHLTQL 109

Query: 138 KYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW-CLANMTSLRILDVSF 196
             L L G+ L +  S + D     L  L+ELR+  N L+ S+P      +T+L+ L +S 
Sbjct: 110 DKLYLGGNQLKSLPSGVFD----RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLST 164

Query: 197 NQLTGSISSSPLVHLTSIEMLILSDNHF 224
           NQL  S+       L  ++ + L  N F
Sbjct: 165 NQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 412 VNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS-----KCSSLEGLY 466
            +   L L +  L     +    LT L WL L+ N+      Q+LS       + L  L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLG 89

Query: 467 LNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIP 526
           L NN L+        +LT+L  + +  N L+      F +L  L+ L ++ N +   +  
Sbjct: 90  LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPA 148

Query: 527 STFSNLKQIESLDLSYNKL 545
             F  L  +++L LS N+L
Sbjct: 149 GAFDKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 463 EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 522
           E L L +  L+         LT+L ++ +  N L+      F  L  L  L +++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 523 RLIPSTFSNLKQIESLDLSYNKLNGKMPH----QLVELKTL 559
            L    F +L Q++ L L  N+L   +P     +L +LK L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL 136

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 21/177 (11%)

Query: 392 LDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFN-LTNLKWLLLEGNRFVG 450
            +L    +T  +         +++ +  +N++++     +    L N+++L L GN+   
Sbjct: 24  ANLKKKSVTDAVT---QNELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL-- 75

Query: 451 EIPQSLS---KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL 507
                +S   + ++L  L L  N L          LT L+ +++  N L+      F +L
Sbjct: 76  ---HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH----QLVELKTLE 560
             L  L+++ N +   L    F  L  +  LDLSYN+L   +P     +L +LK L 
Sbjct: 133 TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLR 187

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 34/177 (19%)

Query: 333 PIHPHRRLRFLDVSNNNFQGHMPVEIG--DILPSLFSFNISTNALHGSIPSS-FGNMKFL 389
            I     +R+L +  N        +I     L +L    ++ N L  S+P+  F  +  L
Sbjct: 58  GIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNL 111

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ----GHMFSRNFNLTNLKWLLLEG 445
           + L L  N L   +P+ +     NL  L L++N LQ    G +F +   LTNL  L L  
Sbjct: 112 KELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDK---LTNLTELDLSY 166

Query: 446 NRFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWLG---NLTRLQYIIMPNN 494
           N+      QSL      K + L+ L L  N L   +P   G    LT LQYI + +N
Sbjct: 167 NQL-----QSLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 46/207 (22%)

Query: 21  SKLLQSMGSFPSL---NTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQS 77
           +  ++S+     L     L L  N   DI+      L   TNL YL L  + L     QS
Sbjct: 50  NSDIKSVQGIQYLPNVRYLALGGNKLHDISA-----LKELTNLTYLILTGNQL-----QS 99

Query: 78  I-ASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPS 136
           +   +F  L NL       N           +SL                   + + + +
Sbjct: 100 LPNGVFDKLTNLKELVLVEN---------QLQSLPDG----------------VFDKLTN 134

Query: 137 LKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW-CLANMTSLRILDVS 195
           L YL+L+ + L +    + D     L +L EL ++ N L+ SLP      +T L+ L + 
Sbjct: 135 LTYLNLAHNQLQSLPKGVFD----KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLY 189

Query: 196 FNQLTGSISSSPLVHLTSIEMLILSDN 222
            NQL  S+       LTS++ + L DN
Sbjct: 190 QNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 19/135 (14%)

Query: 369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG-- 426
           ++ TN+L       F  +  L  L L  N L   +P  +     +L  L LS N LQ   
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 427 -HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPR-W 479
             +F +   LT LK L L  N+      QSL      K + L+ L L  N L   +P   
Sbjct: 93  NGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGV 143

Query: 480 LGNLTRLQYIIMPNN 494
              LT LQYI + +N
Sbjct: 144 FDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 460 SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 519
           +    L L  NSL          LT L  + +  N L+      F +L  L  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 520 ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH----QLVELKTLE 560
           +   L    F  L Q++ L L+ N+L   +P     +L +LK L 
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLR 130

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.3 bits (124), Expect = 3e-07
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 14/178 (7%)

Query: 11  GLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSL 70
            L+ + I+  + L       P+L +L++      D  +       +  NLE L L     
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILG-SDLPNLEKLVLYVGVE 231

Query: 71  HISLLQSIASL--------FPSLKNLSISYCEVNGVLRGQ--GFPSFKSLEHLHMSFAPI 120
                  +           FP+LK L I   E   V+            LE + +S   +
Sbjct: 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 121 --ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLR 176
                   L  + + +  LK++++  + L     + L + L   + + + +  D+D  
Sbjct: 292 TDEGARLLLDHV-DKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYS 348

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.9 bits (123), Expect = 4e-07
 Identities = 28/197 (14%), Positives = 68/197 (34%), Gaps = 26/197 (13%)

Query: 23  LLQSMGSFPSLNTLDLSYNNFTDIAITTTQE------LHNFTNLEYLTLDESSLHISLLQ 76
           ++++   F     L     +F +  I+  ++      L     L  L +  ++     L 
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN----LS 186

Query: 77  SIASLFPSLKNLSISYCEV-NGVLRGQGFPSFKSLEHLHMSF--------APIALNTSFL 127
                 P+LK+L I    + + V+         +LE L +            + +     
Sbjct: 187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246

Query: 128 QIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGS----LPWCL 183
               +  P+LK+L +  +        +  +    L  L+ + ++   L       L   +
Sbjct: 247 S--KDRFPNLKWLGIVDAEEQNVVVEMFLESDI-LPQLETMDISAGVLTDEGARLLLDHV 303

Query: 184 ANMTSLRILDVSFNQLT 200
             +  L+ +++ +N L+
Sbjct: 304 DKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 4e-06
 Identities = 31/209 (14%), Positives = 76/209 (36%), Gaps = 26/209 (12%)

Query: 371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFS 430
             + +   I  +       + L   +     +   ++     +L+ +  +   L      
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQV--DLSPVLDAMPLLNNLKIK 180

Query: 431 RNFNL-------TNLKWLLLEGNRFVGEIPQSL--SKCSSLEGL--------YLNNNSLS 473
              NL        NLK L +        + + +  S   +LE L        Y  +  ++
Sbjct: 181 GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240

Query: 474 GKIPRWLGN-LTRLQYIIMPNNHLEGPIP---VEFCQLDLLQILDISDNNIS---GRLIP 526
              P +  +    L+++ + +   +  +    +E   L  L+ +DIS   ++    RL+ 
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300

Query: 527 STFSNLKQIESLDLSYNKLNGKMPHQLVE 555
                +K ++ +++ YN L+ +M  +L +
Sbjct: 301 DHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 54/260 (20%)

Query: 310 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369
           ++N   LE    I   +G   R  + P   L  L   +  FQ        ++L SL   N
Sbjct: 22  IKNLDALENAQAIKKKLGKLGRQVLPPSELLDHL-FFHYEFQNQRFSA--EVLSSLRQLN 78

Query: 370 ISTNALHGSIPSSFG----------NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
           ++   +     +                 L  ++L++  L       L    +    L L
Sbjct: 79  LAGVRM-----TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL 133

Query: 420 SNNNLQ-------GHMFSRNFNLTNLKWLLLEGNRF----VGEIPQSLSKCSSLEGLYLN 468
             N+L          +     +   +  L L  N      V  + + L+  +S+  L L 
Sbjct: 134 QLNSLGPEACKDLRDLLLH--DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS---GRLI 525
           +  L  +    L         +  N                LQ L+++ N         +
Sbjct: 192 HTGLGDEGLELLAAQ------LDRNRQ--------------LQELNVAYNGAGDTAALAL 231

Query: 526 PSTFSNLKQIESLDLSYNKL 545
                    +E L L +N+L
Sbjct: 232 ARAAREHPSLELLHLYFNEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 23/186 (12%)

Query: 32  SLNTLDLSYNNFTDIAITTTQE--LHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
           SL  L+L+    T +  T            L+ + L    L  + L+++  +F   + L 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 90  ISYCEVN--------GVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGE---SMPSLK 138
           +    +          +L          +  L +S  P+    + + ++ E      S+ 
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQ----CQITTLRLSNNPL--TAAGVAVLMEGLAGNTSVT 186

Query: 139 YLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGS----LPWCLANMTSLRILDV 194
           +LSL  + LG     +L   L     LQEL +A N    +    L        SL +L +
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246

Query: 195 SFNQLT 200
            FN+L+
Sbjct: 247 YFNELS 252

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 16/101 (15%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 135 PSLKYLSLSGS-ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANM----TSL 189
           P L+ ++L+    +   + +   + L +  ++++  +        + + LA M     +L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 190 RILDVSFNQLTG----SISSSPLVHLTSIEMLILSDNHFQI 226
           + L+V  N ++G    ++  + L   TS+  L + +    +
Sbjct: 96  KSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPL 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	682
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.36
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.29

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.7e-65  Score=580.69  Aligned_cols=573  Identities=30%  Similarity=0.396  Sum_probs=470.4

Q ss_pred             CCCCCCCcEEeCCCCCcCCCCcccc--ccCCCCCCCEEecCCCCCCCccccCcccc-CCCCCCCEEeCCCCCCCcchhHH
Q 045291            1 YGGLRKLKSFGLSGVGIRDGSKLLQ--SMGSFPSLNTLDLSYNNFTDIAITTTQEL-HNFTNLEYLTLDESSLHISLLQS   77 (682)
Q Consensus         1 ~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~   77 (682)
                      |+++++|++|+|++|.+  .+.+|.  .++++++|++|||++|.+.+..   +..+ .++++|++|++++|.+++..+..
T Consensus        96 ~~~l~~L~~L~Ls~n~l--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A           96 FKCSASLTSLDLSRNSL--SGPVTTLTSLGSCSGLKFLNVSSNTLDFPG---KVSGGLKLNSLEVLDLSANSISGANVVG  170 (768)
T ss_dssp             CCCCTTCCEEECCSSEE--EEEGGGGGGGGGCTTCCEEECCSSEEECCS---SCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred             hccCCCCCEEECCCCcC--CCcCCChHHHhCCCCCCEEECcCCccCCcC---CHHHhccCCCCCEEECCCCccCCcCChh
Confidence            46789999999999998  677777  8999999999999999887653   3343 78999999999999998877776


Q ss_pred             ---HhhccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCc
Q 045291           78 ---IASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRI  154 (682)
Q Consensus        78 ---~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i  154 (682)
                         +.++..|+++++.+|...+..+    +..+++|++|++++  +.+.+..|. +.. +++|++|++++|.+..   .+
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~--n~l~~~~~~-l~~-l~~L~~L~Ls~n~l~~---~~  239 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSS--NNFSTGIPF-LGD-CSALQHLDISGNKLSG---DF  239 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCS--SCCCSCCCB-CTT-CCSCCEEECCSSCCCS---CH
T ss_pred             hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcC--CcCCCCCcc-ccc-CCCCCEEECcCCcCCC---cc
Confidence               6788889999888888765444    46788888888888  445555555 555 8888888888888843   04


Q ss_pred             ccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcc-cCCCcEEecCCCcCccccCcccc
Q 045291          155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVH-LTSIEMLILSDNHFQIPISLEPL  233 (682)
Q Consensus       155 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~  233 (682)
                      + ..++++++|++|++++|.+.+..|..  .+++|++|++++|.+++.+ |..+.. +++|++|++++|.+++..+. .+
T Consensus       240 ~-~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~i-p~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~  314 (768)
T 3rgz_A          240 S-RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVPP-FF  314 (768)
T ss_dssp             H-HHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESC-CCCSCTTCTTCSEEECCSSEEEECCCG-GG
T ss_pred             c-HHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCcc-CHHHHhhcCcCCEEECcCCcCCCccch-HH
Confidence            4 37888888888888888888766654  7788888888888888777 444444 58888888888888765553 47


Q ss_pred             ccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCC-CCCEEEcCCCCCcCcCchHHHhc
Q 045291          234 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQH-DLEFVDLSHIKMNGEFPTWLLEN  312 (682)
Q Consensus       234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~  312 (682)
                      ..+++|+.|++++|.+.+......  ......++.+.+ ..+...+.+|..+..++ +|+.|++++|.+.+.+|..+ ..
T Consensus       315 ~~l~~L~~L~L~~n~l~~~ip~~~--l~~l~~L~~L~L-s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~-~~  390 (768)
T 3rgz_A          315 GSCSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDL-SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQ  390 (768)
T ss_dssp             GGCTTCCEEECCSSEEEEECCHHH--HTTCTTCCEEEC-CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT-TC
T ss_pred             hcCCCccEEECCCCcccCcCCHHH--HhcCCCCCEEeC-cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh-hh
Confidence            788888888888888764432110  122345777777 55556667787787776 88888888888887777663 33


Q ss_pred             --CCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCC
Q 045291          313 --NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ  390 (682)
Q Consensus       313 --~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  390 (682)
                        +++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|..+.. +++|+.|++++|.+.+..|..+..+++|+
T Consensus       391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence              678899999998888877778888889999999999888788877765 88899999999998888888888889999


Q ss_pred             EEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCC
Q 045291          391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN  470 (682)
Q Consensus       391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  470 (682)
                      +|++++|++.+.+|..+. .+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       470 ~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             EEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             EEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            999999988877776654 7889999999999998888888888899999999999988888888888999999999998


Q ss_pred             cCCCCchhhh----------------------------------------------------------------------
Q 045291          471 SLSGKIPRWL----------------------------------------------------------------------  480 (682)
Q Consensus       471 ~~~~~~~~~~----------------------------------------------------------------------  480 (682)
                      ++.+.+|..+                                                                      
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            8876666543                                                                      


Q ss_pred             cCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCC
Q 045291          481 GNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLE  560 (682)
Q Consensus       481 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  560 (682)
                      ..+++|++|+|++|++++.+|..+..+++|+.|+|++|++++ .+|..++.+++|+.|||++|++++.+|..+..+++|+
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            335779999999999999999999999999999999999998 7899999999999999999999999999999999999


Q ss_pred             EEEccCccCcccCCcccccccccCcccccCCCCCCCCCCCCC
Q 045291          561 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPIC  602 (682)
Q Consensus       561 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~  602 (682)
                      +|++++|+++|.+|+ ..++.++....+.|||.+|+.|+..|
T Consensus       708 ~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~~C  748 (768)
T 3rgz_A          708 EIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRC  748 (768)
T ss_dssp             EEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred             EEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCcCC
Confidence            999999999999998 67889999999999999999988744

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.9e-61  Score=546.10  Aligned_cols=565  Identities=28%  Similarity=0.364  Sum_probs=407.2

Q ss_pred             CCCcEEeCCCCCcCCCCc---cccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhH--HHh
Q 045291            5 RKLKSFGLSGVGIRDGSK---LLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQ--SIA   79 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~--~~~   79 (682)
                      .++++|+|+++++  .+.   +|..+.++++|+.++++.+.+...    +..++++++|++|+|++|.+++.+|.  .+.
T Consensus        50 ~~v~~L~L~~~~l--~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~  123 (768)
T 3rgz_A           50 DKVTSIDLSSKPL--NVGFSAVSSSLLSLTGLESLFLSNSHINGS----VSGFKCSASLTSLDLSRNSLSGPVTTLTSLG  123 (768)
T ss_dssp             TEEEEEECTTSCC--CEEHHHHHHHTTTCTTCCEEECTTSCEEEC----CCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred             CcEEEEECCCCCc--CCccCccChhHhccCcccccCCcCCCcCCC----chhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence            3577888888877  565   777788888888888887766543    45777888888888888888777776  777


Q ss_pred             hccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHH--hhcCCCCcEEEccCCCCCCCCCCcccc
Q 045291           80 SLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQII--GESMPSLKYLSLSGSILGTNSSRILDQ  157 (682)
Q Consensus        80 ~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l--~~~l~~L~~L~L~~~~l~~~~~~i~~~  157 (682)
                      ++..|+++++.+|...+.++.. .+.++++|++|++++  +.+.+..+...  ...+++|++|++++|.+..    ..  
T Consensus       124 ~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~--  194 (768)
T 3rgz_A          124 SCSGLKFLNVSSNTLDFPGKVS-GGLKLNSLEVLDLSA--NSISGANVVGWVLSDGCGELKHLAISGNKISG----DV--  194 (768)
T ss_dssp             GCTTCCEEECCSSEEECCSSCC-SCCCCTTCSEEECCS--SCCEEETHHHHHHTTCCTTCCEEECCSSEEES----CC--
T ss_pred             CCCCCCEEECcCCccCCcCCHH-HhccCCCCCEEECCC--CccCCcCChhhhhhccCCCCCEEECCCCcccc----cC--
Confidence            8888888888887776655543 236777888888877  44445444441  2236667777776666622    11  


Q ss_pred             cccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCC
Q 045291          158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHS  237 (682)
Q Consensus       158 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  237 (682)
                      .+..+++|++|++++|.+.+..|. ++.+++|++|++++|.+++.+ +..+..+++|++|++++|.+++.++..   .++
T Consensus       195 ~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~  269 (768)
T 3rgz_A          195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPL---PLK  269 (768)
T ss_dssp             BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCCC---CCT
T ss_pred             CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCcc---ccC
Confidence            125566666666666666655554 666666666666666665444 455566666666666666665444321   455


Q ss_pred             CCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCC---
Q 045291          238 RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNA---  314 (682)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~---  314 (682)
                      +|++|++++|.+.+......  ......++.+.+ ..+.+.+..|..+..+++|+.|++++|.+.+.+|...+..++   
T Consensus       270 ~L~~L~L~~n~l~~~ip~~~--~~~~~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          270 SLQYLSLAENKFTGEIPDFL--SGACDTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             TCCEEECCSSEEEESCCCCS--CTTCTTCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred             CCCEEECcCCccCCccCHHH--HhhcCcCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence            55555555555543322111  011134444544 333333344445555555555555555544444444344444   


Q ss_pred             ----------------------CCcEEEcCCCCCcccCCCCCCC--CCCccEEEccCCcCCCCCChhhhhcCCCceEEEe
Q 045291          315 ----------------------KLETLFLINDSIGGPFRLPIHP--HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI  370 (682)
Q Consensus       315 ----------------------~L~~L~l~~~~l~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  370 (682)
                                            +|++|++++|.+.+..+..+..  +++|++|++++|.+++.+|..+.. +++|++|++
T Consensus       347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L  425 (768)
T 3rgz_A          347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHL  425 (768)
T ss_dssp             EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEEC
T ss_pred             EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEEC
Confidence                                  4555555555544433434333  667888888888887777777765 889999999


Q ss_pred             cCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcc
Q 045291          371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVG  450 (682)
Q Consensus       371 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  450 (682)
                      ++|.+++..|..|..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus       426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  504 (768)
T 3rgz_A          426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG  504 (768)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence            99999888888899999999999999999877777665 78999999999999998888888899999999999999998


Q ss_pred             cCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchh---------------------------
Q 045291          451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE---------------------------  503 (682)
Q Consensus       451 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------------  503 (682)
                      ..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|..                           
T Consensus       505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (768)
T 3rgz_A          505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK  584 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred             cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence            89999999999999999999999889999999999999999999888665543                           


Q ss_pred             -------------------------------------------ccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEEC
Q 045291          504 -------------------------------------------FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDL  540 (682)
Q Consensus       504 -------------------------------------------~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l  540 (682)
                                                                 +..+++|+.|+|++|++++ .+|..++.+++|+.|+|
T Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~L  663 (768)
T 3rgz_A          585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNL  663 (768)
T ss_dssp             TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEEC
T ss_pred             ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc-cCCHHHhccccCCEEeC
Confidence                                                       3335778999999999998 78899999999999999


Q ss_pred             CCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCC
Q 045291          541 SYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLC  595 (682)
Q Consensus       541 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c  595 (682)
                      ++|++++.+|..++.+++|+.||+++|++++.+|..+..+..++.+++++|+...
T Consensus       664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            9999999999999999999999999999999999989999999999999997553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-57  Score=511.05  Aligned_cols=568  Identities=19%  Similarity=0.178  Sum_probs=410.0

Q ss_pred             cEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCccee
Q 045291            8 KSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN   87 (682)
Q Consensus         8 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l   87 (682)
                      +.++.+++++   ..+|..+.  +++++|+|++|.+.++.   +..+.++++|++|++++|.+++..+..+.++..|+++
T Consensus         7 ~~~~cs~~~L---~~ip~~~~--~~l~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   78 (680)
T 1ziw_A            7 EVADCSHLKL---TQVPDDLP--TNITVLNLTHNQLRRLP---AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL   78 (680)
T ss_dssp             SEEECCSSCC---SSCCSCSC--TTCSEEECCSSCCCCCC---GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred             CeeECCCCCc---cccccccC--CCCcEEECCCCCCCCcC---HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence            4455555554   33444432  55666666666665552   2345566666666666666655555556666666666


Q ss_pred             eccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCE
Q 045291           88 LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQE  167 (682)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~  167 (682)
                      ++.+|... .++.. +|+++++|++|++++|  .+.+..+..+.. +++|++|++++|.+..    +++..++++++|++
T Consensus        79 ~L~~n~l~-~l~~~-~~~~l~~L~~L~L~~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~  149 (680)
T 1ziw_A           79 NLQHNELS-QLSDK-TFAFCTNLTELHLMSN--SIQKIKNNPFVK-QKNLITLDLSHNGLSS----TKLGTQVQLENLQE  149 (680)
T ss_dssp             ECCSSCCC-CCCTT-TTTTCTTCSEEECCSS--CCCCCCSCTTTT-CTTCCEEECCSSCCSC----CCCCSSSCCTTCCE
T ss_pred             ECCCCccC-ccChh-hhccCCCCCEEECCCC--ccCccChhHccc-cCCCCEEECCCCcccc----cCchhhcccccCCE
Confidence            66555443 23322 3556666666666653  222222233333 6666666666665533    33335555666666


Q ss_pred             EEccCCCCcccCchhhc--CCCCCCEEeccCCccccccCCchhccc---------------------------CCCcEEe
Q 045291          168 LRMADNDLRGSLPWCLA--NMTSLRILDVSFNQLTGSISSSPLVHL---------------------------TSIEMLI  218 (682)
Q Consensus       168 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~i~~~~~~~l---------------------------~~L~~L~  218 (682)
                      |++++|.+++..+..+.  .+++|++|++++|.+++ +.+..+..+                           ++|+.|+
T Consensus       150 L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~  228 (680)
T 1ziw_A          150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS  228 (680)
T ss_dssp             EECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred             EEccCCcccccCHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence            66666666554444433  34566666666665552 223333322                           5677777


Q ss_pred             cCCCcCccccCccccccCC--CCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEc
Q 045291          219 LSDNHFQIPISLEPLFNHS--RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDL  296 (682)
Q Consensus       219 L~~n~l~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l  296 (682)
                      +++|.+++..+ ..+..++  +|+.|++++|.+.+.....   .....+++.+.+ ..+......|..+..+++|+.+++
T Consensus       229 L~~n~l~~~~~-~~~~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L  303 (680)
T 1ziw_A          229 LSNSQLSTTSN-TTFLGLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQLEYFFL-EYNNIQHLFSHSLHGLFNVRYLNL  303 (680)
T ss_dssp             CTTSCCCEECT-TTTGGGGGSCCCEEECTTSCCCEECTTT---TTTCTTCCEEEC-CSCCBSEECTTTTTTCTTCCEEEC
T ss_pred             ccCCcccccCh-hHhhccCcCCCCEEECCCCCcCccCccc---ccCcccccEeeC-CCCccCccChhhhcCCCCccEEec
Confidence            77777765433 2344444  4888888888876543221   223346777777 555666677888899999999999


Q ss_pred             CCCCCcC-----cCc---hHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCC-CCChhhhhc--CCCc
Q 045291          297 SHIKMNG-----EFP---TWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG-HMPVEIGDI--LPSL  365 (682)
Q Consensus       297 s~~~~~~-----~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~--l~~L  365 (682)
                      +++...+     .+|   +..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.. .++...+..  .++|
T Consensus       304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L  383 (680)
T 1ziw_A          304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL  383 (680)
T ss_dssp             TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred             cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence            9875443     122   2236788999999999999999888889999999999999997542 233222221  3689


Q ss_pred             eEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCC
Q 045291          366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG  445 (682)
Q Consensus       366 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  445 (682)
                      +.|++++|.+.+..+..|..+++|++|++++|.+.+.++...+.++++|++|++++|++.+..+..+..+++|+.|++++
T Consensus       384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  463 (680)
T 1ziw_A          384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR  463 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred             ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence            99999999999888999999999999999999998778877777899999999999999988888899999999999999


Q ss_pred             CcCc--ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcc--------hhccCCCCCCEEEc
Q 045291          446 NRFV--GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP--------VEFCQLDLLQILDI  515 (682)
Q Consensus       446 n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L  515 (682)
                      |.+.  +..|..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+        ..|.++++|+.|++
T Consensus       464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L  543 (680)
T 1ziw_A          464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL  543 (680)
T ss_dssp             SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred             ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence            9886  4578889999999999999999998888889999999999999999986532        23788999999999


Q ss_pred             cCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccc-cccccCcccccCCCCC
Q 045291          516 SDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTA-QFATFNESSYEGNIFL  594 (682)
Q Consensus       516 s~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~~~~~~n~~~  594 (682)
                      ++|+++. ..+..|.++++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+. .+++++.+++.+|||.
T Consensus       544 ~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          544 ESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CCCCCCC-CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            9999985 5667899999999999999999988888888999999999999999987776565 6889999999999999


Q ss_pred             CCCCC
Q 045291          595 CGLPL  599 (682)
Q Consensus       595 c~~~~  599 (682)
                      |+|+.
T Consensus       623 c~c~~  627 (680)
T 1ziw_A          623 CTCES  627 (680)
T ss_dssp             BCCCC
T ss_pred             cCCcc
Confidence            99974

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-54  Score=487.14  Aligned_cols=588  Identities=19%  Similarity=0.206  Sum_probs=425.4

Q ss_pred             CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCc
Q 045291            5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS   84 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L   84 (682)
                      +++++|+|++|++  ....+..|.++++|++|+|++|.+.++.   +..+.++++|++|++++|.++...+..+.++..|
T Consensus        25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCC---TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccC---HHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            4678888888877  4555566777888888888888777763   4467777888888888887775555567777788


Q ss_pred             ceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCccccccc--CC
Q 045291           85 LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLC--SL  162 (682)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~--~l  162 (682)
                      +++++.+|...+ ++.. +|+++++|++|++++  +.+.+..+..+.. +++|++|++++|.+..    +++..+.  .+
T Consensus       100 ~~L~L~~n~l~~-~~~~-~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~~~~  170 (680)
T 1ziw_A          100 TELHLMSNSIQK-IKNN-PFVKQKNLITLDLSH--NGLSSTKLGTQVQ-LENLQELLLSNNKIQA----LKSEELDIFAN  170 (680)
T ss_dssp             SEEECCSSCCCC-CCSC-TTTTCTTCCEEECCS--SCCSCCCCCSSSC-CTTCCEEECCSSCCCC----BCHHHHGGGTT
T ss_pred             CEEECCCCccCc-cChh-HccccCCCCEEECCC--CcccccCchhhcc-cccCCEEEccCCcccc----cCHHHhhcccc
Confidence            888877776643 3322 377788888888887  3444444444444 7788888888777744    4443332  45


Q ss_pred             CCCCEEEccCCCCcccCchhhcCC---------------------------CCCCEEeccCCccccccCCchhcccCC--
Q 045291          163 VHLQELRMADNDLRGSLPWCLANM---------------------------TSLRILDVSFNQLTGSISSSPLVHLTS--  213 (682)
Q Consensus       163 ~~L~~L~L~~n~l~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~i~~~~~~~l~~--  213 (682)
                      ++|++|++++|.+++..|..+..+                           ++|++|++++|.+++.. +..+..++.  
T Consensus       171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~-~~~~~~l~~~~  249 (680)
T 1ziw_A          171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS-NTTFLGLKWTN  249 (680)
T ss_dssp             CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC-TTTTGGGGGSC
T ss_pred             ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC-hhHhhccCcCC
Confidence            777888888777776666655543                           56778888888887444 667777654  


Q ss_pred             CcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCC-----CCCc----c
Q 045291          214 IEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGF-----IFPK----F  284 (682)
Q Consensus       214 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~----~  284 (682)
                      |++|++++|.+++.. ...+..+++|+.+++++|.+.+.....   .....+++.+.+.. +....     .+|.    .
T Consensus       250 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~-~~~~~~~~~~~lp~i~~~~  324 (680)
T 1ziw_A          250 LTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHS---LHGLFNVRYLNLKR-SFTKQSISLASLPKIDDFS  324 (680)
T ss_dssp             CCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSCCBSEECTTT---TTTCTTCCEEECTT-CBCCC------CCEECTTT
T ss_pred             CCEEECCCCCcCccC-cccccCcccccEeeCCCCccCccChhh---hcCCCCccEEeccc-hhhhcccccccccccChhh
Confidence            999999999887443 345778889999999998887543221   23334677777732 21111     2333    6


Q ss_pred             cccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCc--ccCCCCCCC--CCCccEEEccCCcCCCCCChhhhh
Q 045291          285 LYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG--GPFRLPIHP--HRRLRFLDVSNNNFQGHMPVEIGD  360 (682)
Q Consensus       285 l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~  360 (682)
                      +..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.  ......|..  .++|+.|++++|.+.+..|..+..
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTTT-TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             cccCCCCCEEECCCCccCCCChhH-hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            778999999999999999766655 789999999999998754  233333333  358999999999998666665544


Q ss_pred             cCCCceEEEecCCcCCcCCC-cccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCC--CcccccCCCCCC
Q 045291          361 ILPSLFSFNISTNALHGSIP-SSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ--GHMFSRNFNLTN  437 (682)
Q Consensus       361 ~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~  437 (682)
                       +++|+.|++++|.+.+..+ ..|.++++|++|++++|++. .++...+..+++|+.|++++|.+.  +..+..+..+++
T Consensus       404 -l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~  481 (680)
T 1ziw_A          404 -LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN  481 (680)
T ss_dssp             -CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred             -CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc-eeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence             8999999999999986554 68999999999999999997 566666668999999999999886  567788999999


Q ss_pred             ccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCch--------hhhcCCCCCCeecCCCCcCcCCcchhccCCCC
Q 045291          438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP--------RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL  509 (682)
Q Consensus       438 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  509 (682)
                      |+.|++++|.+.+..+..|.++++|++|++++|.+.+..+        ..+.++++|++|+|++|+++.+.+..|.++++
T Consensus       482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~  561 (680)
T 1ziw_A          482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE  561 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence            9999999999998888889999999999999999975422        23788999999999999999777778999999


Q ss_pred             CCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhh-cCCCCCEEEccCccCcccCC--cccccccccCcc
Q 045291          510 LQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLV-ELKTLEVFSVAYNNLSGEIP--EWTAQFATFNES  586 (682)
Q Consensus       510 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~~  586 (682)
                      |+.|++++|++++ ..+..|.++++|+.|++++|++++..+..+. .+++|+.+++++|++.|.|+  .|+..|..-...
T Consensus       562 L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~  640 (680)
T 1ziw_A          562 LKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHT  640 (680)
T ss_dssp             CCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC--
T ss_pred             cceeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCc
Confidence            9999999999996 6778899999999999999999998888887 78999999999999999987  444443222211


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 045291          587 SYEGNIFLCGLPLPICISPATMPEASIGNEQDDNL  621 (682)
Q Consensus       587 ~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (682)
                      .+.+.     .....|.+|...++......+...+
T Consensus       641 ~~~~~-----~~~~~C~~p~~~~g~~l~~~~~~~~  670 (680)
T 1ziw_A          641 NIPEL-----SSHYLCNTPPHYHGFPVRLFDTSSC  670 (680)
T ss_dssp             -----------------------------------
T ss_pred             ccccc-----cCCcEECCchHHCCCcccccChhhc
Confidence            11111     0122566677666765555554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.5e-55  Score=498.67  Aligned_cols=559  Identities=19%  Similarity=0.180  Sum_probs=384.8

Q ss_pred             cEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcch-hHHHhhccCcce
Q 045291            8 KSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISL-LQSIASLFPSLK   86 (682)
Q Consensus         8 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~   86 (682)
                      +..+.+++++   ..+|.   -.++|++|||++|.|+.+.   +.++.++++|++|++++|...+.+ +..+.++..|++
T Consensus         7 ~~~dcs~~~L---~~vP~---lp~~l~~LdLs~N~i~~i~---~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~   77 (844)
T 3j0a_A            7 RIAFYRFCNL---TQVPQ---VLNTTERLLLSFNYIRTVT---ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI   77 (844)
T ss_dssp             EEEEESCCCS---SCCCS---SCTTCCEEEEESCCCCEEC---SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred             eEEEccCCCC---CCCCC---CCCCcCEEECCCCcCCccC---hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence            4567777776   55665   4578899999999888774   568888999999999888655444 667778888888


Q ss_pred             eeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHH--HhhcCCCCcEEEccCCCCCCCCCCcccccccCCCC
Q 045291           87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQI--IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH  164 (682)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~  164 (682)
                      +++.+|...+..|..  |.++++|++|++++  +.+.+..+..  +.. +++|++|++++|.+...   .+...++++++
T Consensus        78 L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~~-L~~L~~L~Ls~N~l~~~---~~~~~~~~L~~  149 (844)
T 3j0a_A           78 LDLGSSKIYFLHPDA--FQGLFHLFELRLYF--CGLSDAVLKDGYFRN-LKALTRLDLSKNQIRSL---YLHPSFGKLNS  149 (844)
T ss_dssp             EECTTCCCCEECTTS--SCSCSSCCCEECTT--CCCSSCCSTTCCCSS-CSSCCEEEEESCCCCCC---CCCGGGGTCSS
T ss_pred             EECCCCcCcccCHhH--ccCCcccCEeeCcC--CCCCcccccCccccc-cCCCCEEECCCCccccc---ccchhHhhCCC
Confidence            888877766544553  78888888888888  4444434433  344 88888888888887430   22236788888


Q ss_pred             CCEEEccCCCCcccCchhhcCC--CCCCEEeccCCccccccCCchhcccCC------CcEEecCCCcCccccCcccc--c
Q 045291          165 LQELRMADNDLRGSLPWCLANM--TSLRILDVSFNQLTGSISSSPLVHLTS------IEMLILSDNHFQIPISLEPL--F  234 (682)
Q Consensus       165 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~i~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~--~  234 (682)
                      |++|++++|.+++..+..+..+  ++|+.|++++|.+.+.. +..+..+++      |+.|++++|.+++..+....  .
T Consensus       150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l  228 (844)
T 3j0a_A          150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI  228 (844)
T ss_dssp             CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred             CCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc-ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence            8888888888887777777766  78888888888887555 444444444      88888888877654443221  1


Q ss_pred             cCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCccccc--CCCCCEEEcCCCCCcCcCchHHHhc
Q 045291          235 NHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYH--QHDLEFVDLSHIKMNGEFPTWLLEN  312 (682)
Q Consensus       235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~--~~~L~~L~ls~~~~~~~~~~~~~~~  312 (682)
                      ....++.+.+..+.......                   .+......+..+..  .++|+.|++++|.+.+..+.. +..
T Consensus       229 ~~~~l~~L~l~~~~~~~~~~-------------------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~  288 (844)
T 3j0a_A          229 SKSQAFSLILAHHIMGAGFG-------------------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FET  288 (844)
T ss_dssp             CSCCBSEEECCSSCCBCSSS-------------------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSS
T ss_pred             Ccccccceeccccccccccc-------------------ccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhc
Confidence            22456666665433221100                   00011111122222  357888888888877555554 677


Q ss_pred             CCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEE
Q 045291          313 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQIL  392 (682)
Q Consensus       313 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  392 (682)
                      +++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.. +++|+.|++++|.+....+..|..+++|++|
T Consensus       289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  367 (844)
T 3j0a_A          289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL  367 (844)
T ss_dssp             CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS-CTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred             CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC-CCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence            888888888888888877777888888888888888887554554444 7888888888888877777778888888888


Q ss_pred             EccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccC-CccccCCCCCCEEeccCCc
Q 045291          393 DLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEI-PQSLSKCSSLEGLYLNNNS  471 (682)
Q Consensus       393 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~  471 (682)
                      ++++|.+. .++     .+++|+.|++++|+++... .   ...+++.|++++|.+.+.. +..+.++++|++|++++|+
T Consensus       368 ~Ls~N~l~-~i~-----~~~~L~~L~l~~N~l~~l~-~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~  437 (844)
T 3j0a_A          368 DLRDNALT-TIH-----FIPSIPDIFLSGNKLVTLP-K---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR  437 (844)
T ss_dssp             EEETCCSC-CCS-----SCCSCSEEEEESCCCCCCC-C---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred             ECCCCCCC-ccc-----CCCCcchhccCCCCccccc-c---cccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence            88888876 443     2677888888888877432 2   2456788888888877542 2234577888888888888


Q ss_pred             CCCCchh-hhcCCCCCCeecCCCCcCc-----CCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcC
Q 045291          472 LSGKIPR-WLGNLTRLQYIIMPNNHLE-----GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL  545 (682)
Q Consensus       472 ~~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  545 (682)
                      +.+..+. .+..+++|++|++++|.++     +..+..|.++++|+.|+|++|++++ ..+..|.++++|+.|+|++|++
T Consensus       438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l  516 (844)
T 3j0a_A          438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-LPPGVFSHLTALRGLSLNSNRL  516 (844)
T ss_dssp             CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT-CCTTSSSSCCSCSEEEEESCCC
T ss_pred             ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc-cChhHccchhhhheeECCCCCC
Confidence            7754332 3455778888888888876     3334567777888888888888876 6677778888888888888888


Q ss_pred             CCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCCC--------------------CCCCC
Q 045291          546 NGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP--------------------ICISP  605 (682)
Q Consensus       546 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~--------------------~~~~~  605 (682)
                      ++..+..+.  ++|+.|++++|++++..|..   +..++.+++.+|||.|+|+..                    .|.+|
T Consensus       517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          517 TVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             SSCCCCCCC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred             CccChhhhh--ccccEEECCCCcCCCCChhH---hCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCc
Confidence            866665554  77888888888888777763   446777788888888877642                    46667


Q ss_pred             CCCCCCCCCCCCCCCc
Q 045291          606 ATMPEASIGNEQDDNL  621 (682)
Q Consensus       606 ~~~~~~~~~~~~~~~~  621 (682)
                      ....+.+....+...|
T Consensus       592 ~~~~g~~l~~~~~~~C  607 (844)
T 3j0a_A          592 DSFSGVSLFSLSTEGC  607 (844)
T ss_dssp             SSSCSCCTTTCCCCCC
T ss_pred             hhhCCCccccCccccC
Confidence            7666655444333333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.9e-54  Score=476.08  Aligned_cols=539  Identities=18%  Similarity=0.164  Sum_probs=339.5

Q ss_pred             cEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCccee
Q 045291            8 KSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN   87 (682)
Q Consensus         8 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l   87 (682)
                      +.++.++.++   ..+|..+.  +++++|||++|.|+++.   +.++.++++|++|++++|.+++..|..+.++..|+++
T Consensus        15 ~~~~c~~~~l---~~iP~~l~--~~l~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   86 (606)
T 3t6q_A           15 KTYNCENLGL---NEIPGTLP--NSTECLEFSFNVLPTIQ---NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL   86 (606)
T ss_dssp             TEEECTTSCC---SSCCTTSC--TTCCEEECTTCCCSEEC---TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ceEECCCCCc---ccCcCCCC--CcCcEEEccCCccCcCC---hhHhccCccceEEECCCCccceeChhhccCccccCee
Confidence            5678888776   56777664  47999999999999874   5589999999999999999988888888888888888


Q ss_pred             eccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCE
Q 045291           88 LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQE  167 (682)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~  167 (682)
                      ++.+|...+..|..  |+++++|++|++++|.  +.+..+..+.. +++|++|++++|.+..    ++...+..+++|++
T Consensus        87 ~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~--i~~l~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~  157 (606)
T 3t6q_A           87 VLTANPLIFMAETA--LSGPKALKHLFFIQTG--ISSIDFIPLHN-QKTLESLYLGSNHISS----IKLPKGFPTEKLKV  157 (606)
T ss_dssp             ECTTCCCSEECTTT--TSSCTTCCEEECTTSC--CSCGGGSCCTT-CTTCCEEECCSSCCCC----CCCCTTCCCTTCCE
T ss_pred             eCCCCcccccChhh--hcccccccEeeccccC--cccCCcchhcc-CCcccEEECCCCcccc----cCcccccCCcccCE
Confidence            88888776544543  8888888888888843  33332333444 8888888888888854    43234556888888


Q ss_pred             EEccCCCCcccCchhhcCCCCCC--EEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEcc
Q 045291          168 LRMADNDLRGSLPWCLANMTSLR--ILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYAD  245 (682)
Q Consensus       168 L~L~~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  245 (682)
                      |++++|.+++..+..|..+++|+  +|++++|.+++ +++..+. ..+|+.|++++|....    ..+..+.++....+.
T Consensus       158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~-~~~L~~L~l~~~~~~~----~~~~~l~~~~l~~l~  231 (606)
T 3t6q_A          158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFD-SAVFQSLNFGGTQNLL----VIFKGLKNSTIQSLW  231 (606)
T ss_dssp             EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTT-TCEEEEEECTTCSCHH----HHHHHTTTCEEEEEE
T ss_pred             EEcccCcccccChhhhhhhcccceeEEecCCCccCc-cChhHhh-hccccccccCCchhHH----HHhhhccccchhhee
Confidence            88888888877778888888888  78888888874 4244443 4678888888875221    112333333332222


Q ss_pred             CCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCC--CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCC
Q 045291          246 NNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQH--DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN  323 (682)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~--~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~  323 (682)
                      ...+....                       .....+..+..+.  +++.+++++|.+.+..+.. +..+++|++|++++
T Consensus       232 ~~~~~~~~-----------------------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~  287 (606)
T 3t6q_A          232 LGTFEDMD-----------------------DEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTA  287 (606)
T ss_dssp             CCCCTTSC-----------------------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT-TTTCTTCSEEECTT
T ss_pred             chhhcccc-----------------------ccccChhHhchhhcCceeEEEeecCccCccCHHH-hccccCCCEEeccC
Confidence            22111100                       0001111122221  4566666666665433332 55666666666666


Q ss_pred             CCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCC-cccCCCCCCCEEEccCCcCCCc
Q 045291          324 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIP-SSFGNMKFLQILDLSNNHLTGE  402 (682)
Q Consensus       324 ~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~  402 (682)
                      |.+... +..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .
T Consensus       288 n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~  364 (606)
T 3t6q_A          288 THLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-T  364 (606)
T ss_dssp             SCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-E
T ss_pred             CccCCC-ChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-c
Confidence            666543 334555666666666666665433333333 6666666666666654333 34666666666666666665 2


Q ss_pred             Cc--hhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCchhh
Q 045291          403 IP--EYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRW  479 (682)
Q Consensus       403 ~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~  479 (682)
                      +.  ...+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..
T Consensus       365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  444 (606)
T 3t6q_A          365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL  444 (606)
T ss_dssp             EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred             ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence            22  2223356666666666666666656666666666666666666654433 23566666666666666666556666


Q ss_pred             hcCCCCCCeecCCCCcCcCC---cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcC
Q 045291          480 LGNLTRLQYIIMPNNHLEGP---IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVEL  556 (682)
Q Consensus       480 ~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  556 (682)
                      +..+++|++|++++|.+++.   .+..+..+++|+.|++++|++++ ..|..|..+++|++|++++|++++..|+.+..+
T Consensus       445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  523 (606)
T 3t6q_A          445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL  523 (606)
T ss_dssp             TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred             HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence            66666666666666666542   22445666666666666666664 445666666666666666666666666666666


Q ss_pred             CCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          557 KTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       557 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      ++| .|++++|++++..|..+..+++++.+++.+||+.|+|+
T Consensus       524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            666 66666666665555555556666666666666666664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-53  Score=471.85  Aligned_cols=541  Identities=18%  Similarity=0.158  Sum_probs=361.3

Q ss_pred             CcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcce
Q 045291            7 LKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK   86 (682)
Q Consensus         7 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~   86 (682)
                      -++++.+++++   ..+|..+.  +++++|+|++|.++++.   +..+.++++|++|++++|.+++..+..+.++..|++
T Consensus        13 ~~~~~c~~~~l---~~ip~~~~--~~l~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~   84 (606)
T 3vq2_A           13 NITYQCMDQKL---SKVPDDIP--SSTKNIDLSFNPLKILK---SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN   84 (606)
T ss_dssp             TTEEECTTSCC---SSCCTTSC--TTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CCceEccCCCc---ccCCCCCC--CCcCEEECCCCCcCEeC---hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence            46788888887   56777654  89999999999998884   448999999999999999998877888888888999


Q ss_pred             eeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCC
Q 045291           87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQ  166 (682)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~  166 (682)
                      +++.+|...+..|..  |+++++|++|++++|  .+.+..+..+.. +++|++|++++|.+..  .++|. .++++++|+
T Consensus        85 L~Ls~n~l~~~~p~~--~~~l~~L~~L~L~~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~  156 (606)
T 3vq2_A           85 LILTGNPIQSFSPGS--FSGLTSLENLVAVET--KLASLESFPIGQ-LITLKKLNVAHNFIHS--CKLPA-YFSNLTNLV  156 (606)
T ss_dssp             EECTTCCCCCCCTTS--STTCTTCCEEECTTS--CCCCSSSSCCTT-CTTCCEEECCSSCCCC--CCCCG-GGGTCTTCC
T ss_pred             eECCCCcccccChhh--cCCcccCCEEEccCC--ccccccccccCC-CCCCCEEeCCCCcccc--eechH-hHhhcCCCC
Confidence            998888776544554  888999999999884  333333334455 8889999999888832  01554 788889999


Q ss_pred             EEEccCCCCcccCchhhcCCCCCC----EEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291          167 ELRMADNDLRGSLPWCLANMTSLR----ILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF  242 (682)
Q Consensus       167 ~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  242 (682)
                      +|++++|.+++..+..++.+++|+    +|++++|.++ .+++..+... +|++|++++|.+++......+..++.++.+
T Consensus       157 ~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l  234 (606)
T 3vq2_A          157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVH  234 (606)
T ss_dssp             EEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEE
T ss_pred             EEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccc
Confidence            999999988877777777666554    7899999887 5545544444 888999998888654444557778888887


Q ss_pred             EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEc-CCCCCcCcCchHHHhcCCCCcEEEc
Q 045291          243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDL-SHIKMNGEFPTWLLENNAKLETLFL  321 (682)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l-s~~~~~~~~~~~~~~~~~~L~~L~l  321 (682)
                      .+..+.+........                   .....+..+..+ .++.+++ ..+.+.+.+|.  +..+++|+.+++
T Consensus       235 ~l~~~~~~~~~~l~~-------------------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l  292 (606)
T 3vq2_A          235 RLILGEFKDERNLEI-------------------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSL  292 (606)
T ss_dssp             EEEEECCTTSCCCSC-------------------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEE
T ss_pred             cccccccccCCcccc-------------------cChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEe
Confidence            775544332110000                   000001111111 3444555 44555555554  556666777777


Q ss_pred             CCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCC
Q 045291          322 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG  401 (682)
Q Consensus       322 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  401 (682)
                      +++.+....  .+..+++|++|++++|.+ +.+|. +  .+++|++|++++|...+..  .+..+++|++|++++|.+.+
T Consensus       293 ~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  364 (606)
T 3vq2_A          293 AGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF  364 (606)
T ss_dssp             ESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred             cCccchhhh--hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence            766665543  555666777777777766 35662 2  3667777777776443322  45566777777777776652


Q ss_pred             c--CchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCchh
Q 045291          402 E--IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPR  478 (682)
Q Consensus       402 ~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~  478 (682)
                      .  ++.. +..+++|++|++++|.+.+. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|.
T Consensus       365 ~~~~~~~-~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          365 SGCCSYS-DLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             EEECCHH-HHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             Ccchhhh-hccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence            2  1333 33567777777777766543 3556666777777777777665555 5666677777777777777666666


Q ss_pred             hhcCCCCCCeecCCCCcCcC-CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCC
Q 045291          479 WLGNLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK  557 (682)
Q Consensus       479 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  557 (682)
                      .+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++ ..|..+..+++|++|++++|++++..|..+..++
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY  521 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence            66677777777777777665 356666677777777777777664 5566666777777777777777766666677777


Q ss_pred             CCCEEEccCccCcccCCccccccc-ccCcccccCCCCCCCCCC
Q 045291          558 TLEVFSVAYNNLSGEIPEWTAQFA-TFNESSYEGNIFLCGLPL  599 (682)
Q Consensus       558 ~L~~L~l~~n~l~~~~~~~~~~~~-~l~~~~~~~n~~~c~~~~  599 (682)
                      +|+.|++++|+++ .+|..+..+. +++.+++.+||+.|+|+.
T Consensus       522 ~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          522 SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            7777777777766 4554455554 466777777777776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-52  Score=464.50  Aligned_cols=519  Identities=18%  Similarity=0.155  Sum_probs=433.9

Q ss_pred             CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCc
Q 045291            5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS   84 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L   84 (682)
                      +++++|+|++|.+  ....|..|+++++|++|+|++|++.++.   +.+|.++++|++|++++|.+++..|..+.++..|
T Consensus        33 ~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIH---EDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTCCC--SEECTTTSTTCTTCSEEECTTCCCCEEC---TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             CcCcEEEccCCcc--CcCChhHhccCccceEEECCCCccceeC---hhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence            4799999999999  6666889999999999999999999874   6689999999999999999998889999999999


Q ss_pred             ceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCC
Q 045291           85 LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH  164 (682)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~  164 (682)
                      +++++.+|...+..+.  .++++++|++|++++|.  +.+.....+.. +++|++|++++|.+..    +++..++.+++
T Consensus       108 ~~L~L~~n~i~~l~~~--~~~~l~~L~~L~L~~n~--l~~~~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~  178 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFI--PLHNQKTLESLYLGSNH--ISSIKLPKGFP-TEKLKVLDFQNNAIHY----LSKEDMSSLQQ  178 (606)
T ss_dssp             CEEECTTSCCSCGGGS--CCTTCTTCCEEECCSSC--CCCCCCCTTCC-CTTCCEEECCSSCCCE----ECHHHHHTTTT
T ss_pred             cEeeccccCcccCCcc--hhccCCcccEEECCCCc--ccccCcccccC-CcccCEEEcccCcccc----cChhhhhhhcc
Confidence            9999999987653344  38999999999999954  44422233444 8999999999999966    66668999999


Q ss_pred             CC--EEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCcc----ccCccccccCC-
Q 045291          165 LQ--ELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQI----PISLEPLFNHS-  237 (682)
Q Consensus       165 L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~-  237 (682)
                      |+  .|++++|.+.+..|..+.. .+|++|++++|...    +..+..+.++....+....+..    .++...+..+. 
T Consensus       179 L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~----~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~  253 (606)
T 3t6q_A          179 ATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL----LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE  253 (606)
T ss_dssp             CCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH----HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred             cceeEEecCCCccCccChhHhhh-ccccccccCCchhH----HHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence            99  9999999999877776654 68999999999732    4455556555444433322211    11112222222 


Q ss_pred             -CCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCC
Q 045291          238 -RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKL  316 (682)
Q Consensus       238 -~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L  316 (682)
                       +++.+++++|.+..                            ..+..+..+++|+.|++++|.+. .+|.. +..+++|
T Consensus       254 ~~L~~L~l~~n~l~~----------------------------~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~l~~L  303 (606)
T 3t6q_A          254 MSVESINLQKHYFFN----------------------------ISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTL  303 (606)
T ss_dssp             SEEEEEECTTCCCSS----------------------------CCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCSCTTC
T ss_pred             CceeEEEeecCccCc----------------------------cCHHHhccccCCCEEeccCCccC-CCChh-hcccccC
Confidence             57777777776652                            34556788899999999999998 67776 6788999


Q ss_pred             cEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCC--CcccCCCCCCCEEEc
Q 045291          317 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSI--PSSFGNMKFLQILDL  394 (682)
Q Consensus       317 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l  394 (682)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..  +..+..+++|++|++
T Consensus       304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  383 (606)
T 3t6q_A          304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL  383 (606)
T ss_dssp             CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred             CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence            999999999998888888899999999999999987787765566999999999999998765  778999999999999


Q ss_pred             cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccc-cCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCC
Q 045291          395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFS-RNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS  473 (682)
Q Consensus       395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  473 (682)
                      ++|.+. .++...+..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus       384 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          384 SYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             CSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred             CCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence            999997 44444555899999999999999876554 4888999999999999999888999999999999999999997


Q ss_pred             CC---chhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291          474 GK---IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP  550 (682)
Q Consensus       474 ~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  550 (682)
                      +.   .+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++ ..|..+..+++| .|++++|++++..|
T Consensus       463 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             GGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG-GGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             ccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc-CChhHhCccccc-EEECcCCcccccCH
Confidence            62   23568899999999999999999999999999999999999999987 788999999999 99999999999999


Q ss_pred             hhhhcCCCCCEEEccCccCcccCCc
Q 045291          551 HQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       551 ~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      ..+..+++|+.+++++|++.|.++.
T Consensus       541 ~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          541 SLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             GGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             hhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999999998874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-51  Score=471.27  Aligned_cols=513  Identities=22%  Similarity=0.242  Sum_probs=421.6

Q ss_pred             CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCC-CccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhcc
Q 045291            4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT-DIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLF   82 (682)
Q Consensus         4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~   82 (682)
                      .++|++|+|++|.+  ....|..|..+++|++|||++|... .+.   +.++.++++|++|+|++|.+++..|..+.++.
T Consensus        23 p~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~   97 (844)
T 3j0a_A           23 LNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF   97 (844)
T ss_dssp             CTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEEC---TTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred             CCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccC---HHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence            47899999999999  6777899999999999999999543 342   45899999999999999999988899999999


Q ss_pred             CcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchh-HHHhhcCCCCcEEEccCCCCCCCCCCcccccccC
Q 045291           83 PSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFL-QIIGESMPSLKYLSLSGSILGTNSSRILDQGLCS  161 (682)
Q Consensus        83 ~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~  161 (682)
                      .|+++++.+|...+.++...+++++++|++|++++  +.+.+..+ ..+.. +++|++|++++|.+..    +.+..+..
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~--N~l~~~~~~~~~~~-L~~L~~L~Ls~N~i~~----~~~~~l~~  170 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK--NQIRSLYLHPSFGK-LNSLKSIDFSSNQIFL----VCEHELEP  170 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES--CCCCCCCCCGGGGT-CSSCCEEEEESSCCCC----CCSGGGHH
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCC--CcccccccchhHhh-CCCCCEEECCCCcCCe----eCHHHccc
Confidence            99999999998887677666799999999999999  44444444 34555 9999999999999855    44447776


Q ss_pred             C--CCCCEEEccCCCCcccCchhhcCCCC------CCEEeccCCccccccCCchhcc---cCCCcEEecCCCcCccc---
Q 045291          162 L--VHLQELRMADNDLRGSLPWCLANMTS------LRILDVSFNQLTGSISSSPLVH---LTSIEMLILSDNHFQIP---  227 (682)
Q Consensus       162 l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~L~~n~l~~~i~~~~~~~---l~~L~~L~L~~n~l~~~---  227 (682)
                      +  ++|+.|++++|.+.+..|..+..+++      |++|++++|.+++.+ +..+..   ..+++.+.++.+.....   
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~l~~~~l~~L~l~~~~~~~~~~~  249 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI-TGNFSNAISKSQAFSLILAHHIMGAGFGF  249 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT-TSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhH-HHHHHhhcCcccccceecccccccccccc
Confidence            6  89999999999999888877776665      999999999988766 444433   35788888874433211   


Q ss_pred             -----cCcccccc--CCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCC
Q 045291          228 -----ISLEPLFN--HSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIK  300 (682)
Q Consensus       228 -----~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~  300 (682)
                           .....+..  .++|+.|++++|.+..                            ..+..+..+++|+.|++++|.
T Consensus       250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~----------------------------~~~~~~~~l~~L~~L~L~~n~  301 (844)
T 3j0a_A          250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFS----------------------------LNSRVFETLKDLKVLNLAYNK  301 (844)
T ss_dssp             SSSTTGGGTTTTTTTTSCCCEEECTTCCCCE----------------------------ECSCCSSSCCCCCEEEEESCC
T ss_pred             cccCCCChhhhhccccCCccEEECCCCcccc----------------------------cChhhhhcCCCCCEEECCCCc
Confidence                 11112222  2678888888777653                            345667888999999999999


Q ss_pred             CcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCC
Q 045291          301 MNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIP  380 (682)
Q Consensus       301 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  380 (682)
                      +.+..|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+++.  
T Consensus       302 i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i--  377 (844)
T 3j0a_A          302 INKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTI--  377 (844)
T ss_dssp             CCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCC--
T ss_pred             CCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcc--
Confidence            98766665 7899999999999999999888899999999999999999974 4444445599999999999998843  


Q ss_pred             cccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCC-ccccC
Q 045291          381 SSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIP-QSLSK  458 (682)
Q Consensus       381 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~  458 (682)
                         ..+++|+.|++++|++. .+|..    ..+++.|++++|++.+... ..+..+++|++|++++|.+.+..+ ..+..
T Consensus       378 ---~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  449 (844)
T 3j0a_A          378 ---HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE  449 (844)
T ss_dssp             ---SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred             ---cCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence               33789999999999998 67653    5689999999999987533 234578999999999999986543 34667


Q ss_pred             CCCCCEEeccCCcCC-----CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCC
Q 045291          459 CSSLEGLYLNNNSLS-----GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK  533 (682)
Q Consensus       459 l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~  533 (682)
                      +++|+.|++++|.+.     +..+..|.++++|++|+|++|.+++..+..|.++++|+.|+|++|++++ ..+..+.  +
T Consensus       450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--~  526 (844)
T 3j0a_A          450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLP--A  526 (844)
T ss_dssp             CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCC--S
T ss_pred             CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhh--c
Confidence            899999999999986     3445678899999999999999999999999999999999999999986 5666665  8


Q ss_pred             CCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       534 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      +|+.|++++|++++..|..+   ++|+.+++++|++.|.|+-
T Consensus       527 ~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          527 NLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             cccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence            99999999999999888765   5799999999999998873

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-51  Score=454.76  Aligned_cols=522  Identities=19%  Similarity=0.163  Sum_probs=429.1

Q ss_pred             CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCc
Q 045291            5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS   84 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L   84 (682)
                      +++++|+|++|.+  ....+..|.++++|++|++++|.+.++.   +.++.++++|++|++++|.+++..|..+.++..|
T Consensus        32 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~---~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIE---DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEEC---TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccC---HHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence            6799999999999  6666678999999999999999999884   5589999999999999999998889999999999


Q ss_pred             ceeeccCccccCcccCCCCCCCCCCCceeecCCCcccccc-chhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCC
Q 045291           85 LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT-SFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLV  163 (682)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~  163 (682)
                      +++++.+|...+..+..  ++++++|++|++++|  .+.+ .+|..+.. +++|++|++++|.+..    +++..++.+.
T Consensus       107 ~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n--~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~  177 (606)
T 3vq2_A          107 ENLVAVETKLASLESFP--IGQLITLKKLNVAHN--FIHSCKLPAYFSN-LTNLVHVDLSYNYIQT----ITVNDLQFLR  177 (606)
T ss_dssp             CEEECTTSCCCCSSSSC--CTTCTTCCEEECCSS--CCCCCCCCGGGGT-CTTCCEEECCSSCCCE----ECTTTTHHHH
T ss_pred             CEEEccCCccccccccc--cCCCCCCCEEeCCCC--cccceechHhHhh-cCCCCEEEccCCccee----cChhhhhhhh
Confidence            99999999876533343  999999999999994  4443 46777777 9999999999999865    5555666665


Q ss_pred             CCC----EEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCC
Q 045291          164 HLQ----ELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRL  239 (682)
Q Consensus       164 ~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L  239 (682)
                      +|+    +|++++|.+++..+..+... +|++|++++|.+.+...+..+..+++++.+++..+.+........+      
T Consensus       178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~------  250 (606)
T 3vq2_A          178 ENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF------  250 (606)
T ss_dssp             HCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC------
T ss_pred             ccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc------
Confidence            554    89999999997666666555 9999999999987555477889999999998876655422111100      


Q ss_pred             cEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEE
Q 045291          240 KIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETL  319 (682)
Q Consensus       240 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L  319 (682)
                           ....+.         ......++.+.+...+...+..|. +..+++|+.++++++.+. .+| . +..+++|++|
T Consensus       251 -----~~~~~~---------~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~-l~~~~~L~~L  312 (606)
T 3vq2_A          251 -----EPSIME---------GLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D-VPKHFKWQSL  312 (606)
T ss_dssp             -----CGGGGT---------TGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C-CCTTCCCSEE
T ss_pred             -----ChHHhh---------hhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-h-ccccccCCEE
Confidence                 000000         111123344444334444445555 788899999999999986 556 3 6788999999


Q ss_pred             EcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcC--CCcccCCCCCCCEEEccCC
Q 045291          320 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS--IPSSFGNMKFLQILDLSNN  397 (682)
Q Consensus       320 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n  397 (682)
                      ++++|.+..+ + .+ .+++|++|++++|...+..+  + ..+++|++|++++|.+++.  .+..+..+++|++|++++|
T Consensus       313 ~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n  386 (606)
T 3vq2_A          313 SIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSISFK--K-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN  386 (606)
T ss_dssp             EEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEECC--C-CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred             EcccccCccc-c-cC-CCCccceeeccCCcCccchh--h-ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence            9999999554 3 45 89999999999996554442  2 2489999999999999866  3778899999999999999


Q ss_pred             cCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCC-C
Q 045291          398 HLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG-K  475 (682)
Q Consensus       398 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~  475 (682)
                      .+. .++. .+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+ .
T Consensus       387 ~l~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  464 (606)
T 3vq2_A          387 GAI-IMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT  464 (606)
T ss_dssp             SEE-EECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             ccc-cchh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            987 5664 34479999999999999998877 678899999999999999998899999999999999999999987 4


Q ss_pred             chhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhc
Q 045291          476 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE  555 (682)
Q Consensus       476 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  555 (682)
                      +|..+..+++|++|++++|++++..|..|..+++|++|++++|++++ ..|..+..+++|++|++++|+++ .+|..+..
T Consensus       465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~  542 (606)
T 3vq2_A          465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH  542 (606)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-EEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred             hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC-cCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence            78889999999999999999999999999999999999999999997 77899999999999999999999 56666888


Q ss_pred             CC-CCCEEEccCccCcccCCc
Q 045291          556 LK-TLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       556 l~-~L~~L~l~~n~l~~~~~~  575 (682)
                      ++ +|+.+++++|++.|.++.
T Consensus       543 l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          543 FPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             SCTTCCEEECCSCCCCCSSTT
T ss_pred             hcccCcEEEccCCCcccCCcc
Confidence            87 599999999999998884

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-47  Score=417.26  Aligned_cols=517  Identities=18%  Similarity=0.194  Sum_probs=365.3

Q ss_pred             CcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcce
Q 045291            7 LKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK   86 (682)
Q Consensus         7 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~   86 (682)
                      .+.++.++.++   ..+|..+  .+++++|++++|.++++.   +.++.++++|++|++++|.+++..+..+.++..|++
T Consensus         9 ~~~~~c~~~~l---~~ip~~l--~~~l~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~   80 (570)
T 2z63_A            9 NITYQCMELNF---YKIPDNL--PFSTKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST   80 (570)
T ss_dssp             TTEEECCSSCC---SSCCSSS--CSSCCEEECCSCCCCEEC---TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCc---cccCCCc--cccccEEEccCCccCccC---hhHhhCCCCceEEECCCCcCCccCcccccCchhCCE
Confidence            35667776665   5566644  367999999999988874   457888999999999999887666666666666666


Q ss_pred             eeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCC
Q 045291           87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQ  166 (682)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~  166 (682)
                      +++.+|...+..+.  +|+++++|++|++++|..  ....+..+.. +++|++|++++|.+..  .++|. .++++++|+
T Consensus        81 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l--~~l~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~  152 (570)
T 2z63_A           81 LILTGNPIQSLALG--AFSGLSSLQKLVAVETNL--ASLENFPIGH-LKTLKELNVAHNLIQS--FKLPE-YFSNLTNLE  152 (570)
T ss_dssp             EECTTCCCCEECTT--TTTTCTTCCEEECTTSCC--CCSTTCSCTT-CTTCCEEECCSSCCCC--CCCCG-GGGGCTTCC
T ss_pred             EeCcCCcCCccCHh--hhcCcccccccccccccc--ccCCCccccc-cccccEEecCCCccce--ecChh-hhcccCCCC
Confidence            66666654332222  366666666666666332  2111112333 6666666666666522  01333 566666666


Q ss_pred             EEEccCCCCcccCchhhcCCCCC----CEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291          167 ELRMADNDLRGSLPWCLANMTSL----RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF  242 (682)
Q Consensus       167 ~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  242 (682)
                      +|++++|.+++..+..++.+++|    ++|++++|.+. .+.+..+... +|+.|++++|..........+..+..++..
T Consensus       153 ~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~  230 (570)
T 2z63_A          153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH  230 (570)
T ss_dssp             EEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEE
T ss_pred             EEeCcCCccceecHHHccchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCcccccee
Confidence            66666666665555555555555    56666666665 3324444433 566666666543221111223344444443


Q ss_pred             EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCC--CCCEEEcCCC-CCcCcCchHHHhcCCCCcEE
Q 045291          243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQH--DLEFVDLSHI-KMNGEFPTWLLENNAKLETL  319 (682)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~--~L~~L~ls~~-~~~~~~~~~~~~~~~~L~~L  319 (682)
                      .+....+...                      ..........+..+.  .++.++++.+ .+.+..|.. +..+++|++|
T Consensus       231 ~l~~~~~~~~----------------------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L  287 (570)
T 2z63_A          231 RLVLGEFRNE----------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSF  287 (570)
T ss_dssp             EEEEEECCCC----------------------SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEE
T ss_pred             eeccccccCc----------------------hhhhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEE
Confidence            3322111100                      000000111122222  2556677666 555566665 6788999999


Q ss_pred             EcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcC
Q 045291          320 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL  399 (682)
Q Consensus       320 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  399 (682)
                      ++++|.+... +..+..+ +|++|++++|.+. .+|..   .+++|+.|++++|.+.+..+.  ..+++|++|++++|.+
T Consensus       288 ~l~~~~l~~l-~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l  359 (570)
T 2z63_A          288 SLVSVTIERV-KDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL  359 (570)
T ss_dssp             EEESCEECSC-CBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC
T ss_pred             EecCccchhh-hhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc
Confidence            9999988764 4455666 9999999999997 66653   488999999999998866554  6789999999999998


Q ss_pred             CCcC--chhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCc
Q 045291          400 TGEI--PEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKI  476 (682)
Q Consensus       400 ~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~  476 (682)
                      .+..  +.. +.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..
T Consensus       360 ~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  437 (570)
T 2z63_A          360 SFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  437 (570)
T ss_dssp             BEEEEEEHH-HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             Ccccccccc-ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence            7332  344 44799999999999999876655 8889999999999999987655 57889999999999999999888


Q ss_pred             hhhhcCCCCCCeecCCCCcCc-CCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhc
Q 045291          477 PRWLGNLTRLQYIIMPNNHLE-GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE  555 (682)
Q Consensus       477 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  555 (682)
                      |..+.++++|++|++++|.++ +..|..+..+++|+.|++++|++++ ..|..+..+++|++|++++|++++..+..+..
T Consensus       438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  516 (570)
T 2z63_A          438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR  516 (570)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc-CChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence            999999999999999999997 5688889999999999999999986 66889999999999999999999888888999


Q ss_pred             CCCCCEEEccCccCcccCCc
Q 045291          556 LKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       556 l~~L~~L~l~~n~l~~~~~~  575 (682)
                      +++|+.|++++|+++|.+|.
T Consensus       517 l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          517 LTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCCEEECCSSCBCCCTTT
T ss_pred             ccCCcEEEecCCcccCCCcc
Confidence            99999999999999999986

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-46  Score=412.44  Aligned_cols=514  Identities=20%  Similarity=0.188  Sum_probs=413.5

Q ss_pred             CCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCc
Q 045291           32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLE  111 (682)
Q Consensus        32 ~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~  111 (682)
                      ..++.+.++.+++.+    |..+.  +++++|++++|.+++..+..+.+++.|+++++.+|...+ ++.. +|+++++|+
T Consensus         8 ~~~~~~c~~~~l~~i----p~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~-~~~~l~~L~   79 (570)
T 2z63_A            8 PNITYQCMELNFYKI----PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDG-AYQSLSHLS   79 (570)
T ss_dssp             TTTEEECCSSCCSSC----CSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTT-TTTTCTTCC
T ss_pred             CCcEEEeCCCCcccc----CCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcc-cccCchhCC
Confidence            346788888888887    55443  589999999999998888889999999999999987654 4432 489999999


Q ss_pred             eeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc-cCchhhcCCCCCC
Q 045291          112 HLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLR  190 (682)
Q Consensus       112 ~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  190 (682)
                      +|++++|  .+....+..+.. +++|++|++++|.+..    ++...++++++|++|++++|.+.+ .+|..|.++++|+
T Consensus        80 ~L~L~~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  152 (570)
T 2z63_A           80 TLILTGN--PIQSLALGAFSG-LSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  152 (570)
T ss_dssp             EEECTTC--CCCEECTTTTTT-CTTCCEEECTTSCCCC----STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             EEeCcCC--cCCccCHhhhcC-cccccccccccccccc----CCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence            9999994  444444455555 9999999999999866    666678999999999999999987 4689999999999


Q ss_pred             EEeccCCccccccCCchhcccCCC----cEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccc
Q 045291          191 ILDVSFNQLTGSISSSPLVHLTSI----EMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL  266 (682)
Q Consensus       191 ~L~L~~n~l~~~i~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l  266 (682)
                      +|++++|.++ .+.+..+..+++|    +.|++++|.+++..+ ..+... +|+.+++++|.....              
T Consensus       153 ~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~--------------  215 (570)
T 2z63_A          153 HLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLN--------------  215 (570)
T ss_dssp             EEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTT--------------
T ss_pred             EEeCcCCccc-eecHHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEeccccccccc--------------
Confidence            9999999998 4546778888888    899999999885443 334433 788998888743311              


Q ss_pred             cceeccccCCCCCCCCcccccCCCCCEEEcCCCCCc-----CcCchHHHhcCC--CCcEEEcCCC-CCcccCCCCCCCCC
Q 045291          267 NRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMN-----GEFPTWLLENNA--KLETLFLIND-SIGGPFRLPIHPHR  338 (682)
Q Consensus       267 ~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~-----~~~~~~~~~~~~--~L~~L~l~~~-~l~~~~~~~~~~~~  338 (682)
                                   .++..+..+++++...+....+.     ..++...+..+.  .++.+++..+ .+.+..+..+..++
T Consensus       216 -------------~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~  282 (570)
T 2z63_A          216 -------------VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT  282 (570)
T ss_dssp             -------------HHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred             -------------chhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence                         12333444455544443322111     122222233333  3567777776 66666677888899


Q ss_pred             CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEE
Q 045291          339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA  418 (682)
Q Consensus       339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  418 (682)
                      +|++|++++|.+. .+|..+.. + +|+.|++++|.+. .+|.  ..+++|++|++++|.+.+..+.   ..+++|++|+
T Consensus       283 ~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~  353 (570)
T 2z63_A          283 NVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLD  353 (570)
T ss_dssp             TCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEE
T ss_pred             cccEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEe
Confidence            9999999999997 67777665 5 9999999999998 4443  4788999999999998765554   4789999999


Q ss_pred             ccCCcCCCcc--cccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCch-hhhcCCCCCCeecCCCCc
Q 045291          419 LSNNNLQGHM--FSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTRLQYIIMPNNH  495 (682)
Q Consensus       419 l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~  495 (682)
                      +++|++.+..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus       354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  432 (570)
T 2z63_A          354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  432 (570)
T ss_dssp             CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred             CcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence            9999998654  56677899999999999999865544 9999999999999999987655 578899999999999999


Q ss_pred             CcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          496 LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       496 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      +.+..+..+.++++|+.|++++|++++...|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus       433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            99999999999999999999999997325788999999999999999999988899999999999999999999988888


Q ss_pred             ccccccccCcccccCCCCCCCCCCC
Q 045291          576 WTAQFATFNESSYEGNIFLCGLPLP  600 (682)
Q Consensus       576 ~~~~~~~l~~~~~~~n~~~c~~~~~  600 (682)
                      .+..+++++.+++.+|++.|+|+..
T Consensus       513 ~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          513 IFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             HhhcccCCcEEEecCCcccCCCcch
Confidence            7888999999999999999998753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-45  Score=404.68  Aligned_cols=493  Identities=20%  Similarity=0.177  Sum_probs=334.9

Q ss_pred             CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccC
Q 045291            4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP   83 (682)
Q Consensus         4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~   83 (682)
                      |+...+.+.+++++   ..+|..+.  ++|++|+|++|+++++.   +.++.++++|++|++++|.+++..+..      
T Consensus         4 C~~~~~c~~~~~~l---~~ip~~~~--~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~------   69 (549)
T 2z81_A            4 CDASGVCDGRSRSF---TSIPSGLT--AAMKSLDLSFNKITYIG---HGDLRACANLQVLILKSSRINTIEGDA------   69 (549)
T ss_dssp             ECTTSEEECTTSCC---SSCCSCCC--TTCCEEECCSSCCCEEC---SSTTSSCTTCCEEECTTSCCCEECTTT------
T ss_pred             CCCCceEECCCCcc---ccccccCC--CCccEEECcCCccCccC---hhhhhcCCcccEEECCCCCcCccChhh------
Confidence            34445667777776   56676553  78899999999888773   457888888999988888876443333      


Q ss_pred             cceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCC
Q 045291           84 SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLV  163 (682)
Q Consensus        84 L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~  163 (682)
                                          |.++++|++|++++  +.+.+..+..+.. +++|++|++++|.+..  ..++. .+++++
T Consensus        70 --------------------~~~l~~L~~L~Ls~--n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~--~~~~~-~~~~l~  123 (549)
T 2z81_A           70 --------------------FYSLGSLEHLDLSD--NHLSSLSSSWFGP-LSSLKYLNLMGNPYQT--LGVTS-LFPNLT  123 (549)
T ss_dssp             --------------------TTTCTTCCEEECTT--SCCCSCCHHHHTT-CTTCCEEECTTCCCSS--SCSSC-SCTTCT
T ss_pred             --------------------ccccccCCEEECCC--CccCccCHHHhcc-CCCCcEEECCCCcccc--cchhh-hhhccC
Confidence                                55666666666666  3333333333444 6777777777776632  00232 566677


Q ss_pred             CCCEEEccCCCCcccC-chhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291          164 HLQELRMADNDLRGSL-PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF  242 (682)
Q Consensus       164 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  242 (682)
                      +|++|++++|.+.+.+ +..|.++++|++|++++|.+++.+ +..+..+++|++|++++|.+. .++...+..+++|+.+
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L  201 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYL  201 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEE
T ss_pred             CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-hhhhhccccCceEecccCccc-ccchhhHhhcccccEE
Confidence            7777777776633333 356667777777777777766444 566666777777777776654 2222223456677777


Q ss_pred             EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHH---HhcCCCCcEE
Q 045291          243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWL---LENNAKLETL  319 (682)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~~~~L~~L  319 (682)
                      ++++|.+.+....                         .......+++|+.|++++|.+.+..+..+   +..+++|+.+
T Consensus       202 ~L~~n~l~~~~~~-------------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l  256 (549)
T 2z81_A          202 ELRDTNLARFQFS-------------------------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV  256 (549)
T ss_dssp             EEESCBCTTCCCC-------------------------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred             EccCCcccccccc-------------------------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence            7777666532100                         00111235567777777777665444432   3456677788


Q ss_pred             EcCCCCCcccCC------CCCCCCCCccEEEccCCcCCCC-----CChhhhhcCCCceEEEecCCcCCcCCCcccCCCCC
Q 045291          320 FLINDSIGGPFR------LPIHPHRRLRFLDVSNNNFQGH-----MPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKF  388 (682)
Q Consensus       320 ~l~~~~l~~~~~------~~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~  388 (682)
                      ++++|.+.+...      ..+..+.+++.|++.++.+...     ++ .+....++|+.|++++|.+.......+..+++
T Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~-~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~  335 (549)
T 2z81_A          257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSKVFLVPCSFSQHLKS  335 (549)
T ss_dssp             EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC-HHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred             ccccccccccccccccchhhhhhhcccccccccccccchhhhcccch-hhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence            887776655321      2345677888888888866521     11 12233678888999888887433333457888


Q ss_pred             CCEEEccCCcCCCcCchh--hhhCCCCCCEEEccCCcCCCccc--ccCCCCCCccEEECCCCcCcccCCccccCCCCCCE
Q 045291          389 LQILDLSNNHLTGEIPEY--LAVGCVNLNSLALSNNNLQGHMF--SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEG  464 (682)
Q Consensus       389 L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  464 (682)
                      |++|++++|++.+.++..  .+..+++|+.|++++|++++..+  ..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus       336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~  414 (549)
T 2z81_A          336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF  414 (549)
T ss_dssp             CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCE
T ss_pred             ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccE
Confidence            999999988887555432  23467888999999988886543  45677888999999999887 56777888889999


Q ss_pred             EeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCc
Q 045291          465 LYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK  544 (682)
Q Consensus       465 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~  544 (682)
                      |++++|.+.+ +|..+  .++|++|++++|++++..    ..+++|++|++++|+++.  +|. ...+++|+.|++++|+
T Consensus       415 L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~--ip~-~~~l~~L~~L~Ls~N~  484 (549)
T 2z81_A          415 LNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT--LPD-ASLFPVLLVMKISRNQ  484 (549)
T ss_dssp             EECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS--CCC-GGGCTTCCEEECCSSC
T ss_pred             EECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc--CCC-cccCccCCEEecCCCc
Confidence            9999998873 34332  368899999999988653    578899999999999974  454 3568899999999999


Q ss_pred             CCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          545 LNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       545 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      +++..|..+..+++|+.|++++|++.|.+|.
T Consensus       485 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          485 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             cCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            9988888888999999999999999988873

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-44  Score=395.26  Aligned_cols=482  Identities=15%  Similarity=0.135  Sum_probs=321.3

Q ss_pred             EeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEc
Q 045291           63 LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSL  142 (682)
Q Consensus        63 L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L  142 (682)
                      .+.+++.++ .+|..+.  ..++++++.+|...+..+.  .|.++++|++|++++  +.+.+..+..+.. +++|++|++
T Consensus        10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~--n~i~~~~~~~~~~-l~~L~~L~L   81 (549)
T 2z81_A           10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKS--SRINTIEGDAFYS-LGSLEHLDL   81 (549)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTT--SCCCEECTTTTTT-CTTCCEEEC
T ss_pred             EECCCCccc-cccccCC--CCccEEECcCCccCccChh--hhhcCCcccEEECCC--CCcCccChhhccc-cccCCEEEC
Confidence            345555554 3333322  3566666666554332232  256666666666666  3333333333443 666666666


Q ss_pred             cCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc-cCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCC
Q 045291          143 SGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSD  221 (682)
Q Consensus       143 ~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~  221 (682)
                      ++|.+..    +++..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+++..+..+++|++|++++
T Consensus        82 s~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           82 SDNHLSS----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             TTSCCCS----CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             CCCccCc----cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            6666644    444346666666666666666654 23455666666666666666543355445566666666666666


Q ss_pred             CcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcc-cccCCCCCEEEcCCCC
Q 045291          222 NHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKF-LYHQHDLEFVDLSHIK  300 (682)
Q Consensus       222 n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~  300 (682)
                      |.+++..+ ..+..+++|+.|+++.|.+..                             .|.+ +..+++|+.|++++|.
T Consensus       158 n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~-----------------------------~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          158 LSLRNYQS-QSLKSIRDIHHLTLHLSESAF-----------------------------LLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             TTCCEECT-TTTTTCSEEEEEEEECSBSTT-----------------------------HHHHHHHSTTTBSEEEEESCB
T ss_pred             CcccccCh-hhhhccccCceEecccCcccc-----------------------------cchhhHhhcccccEEEccCCc
Confidence            66654333 235555566666665554321                             1222 2345667777777776


Q ss_pred             CcCcC--chHHHhcCCCCcEEEcCCCCCcccCC----CCCCCCCCccEEEccCCcCCCCCC-----hhhhhcCCCceEEE
Q 045291          301 MNGEF--PTWLLENNAKLETLFLINDSIGGPFR----LPIHPHRRLRFLDVSNNNFQGHMP-----VEIGDILPSLFSFN  369 (682)
Q Consensus       301 ~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~-----~~~~~~l~~L~~L~  369 (682)
                      +.+..  |..+...+++|+.|++++|.+.+...    ..+..+++|+.+++++|.+.+...     ......+++++.|+
T Consensus       208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  287 (549)
T 2z81_A          208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT  287 (549)
T ss_dssp             CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred             cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence            65421  22223445667777777666553221    122345567777777776543210     01112356777777


Q ss_pred             ecCCcCCcC-----CCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc---ccCCCCCCccEE
Q 045291          370 ISTNALHGS-----IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF---SRNFNLTNLKWL  441 (682)
Q Consensus       370 l~~n~i~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L  441 (682)
                      +.++.+...     .+..+...++|++|++++|.+. .+|..++..+++|++|++++|++.+..+   ..+..+++|++|
T Consensus       288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L  366 (549)
T 2z81_A          288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL  366 (549)
T ss_dssp             EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred             ccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence            777765432     1112334568999999999997 8998887789999999999999997653   346789999999


Q ss_pred             ECCCCcCcccCC--ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCc
Q 045291          442 LLEGNRFVGEIP--QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  519 (682)
Q Consensus       442 ~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  519 (682)
                      ++++|.+.+..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++... .+  .++|+.|++++|+
T Consensus       367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N~  442 (549)
T 2z81_A          367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT-CI--PQTLEVLDVSNNN  442 (549)
T ss_dssp             ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-TS--CTTCSEEECCSSC
T ss_pred             EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc-hh--cCCceEEECCCCC
Confidence            999999986532  56888999999999999998 678788899999999999999985433 22  2689999999999


Q ss_pred             CCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          520 ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       520 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      +++ .    ...+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|.++..+..++.+++++|++.|+|+
T Consensus       443 l~~-~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          443 LDS-F----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CSC-C----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hhh-h----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            986 2    257899999999999999 5565 4678999999999999999888888999999999999999999987

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.1e-46  Score=409.45  Aligned_cols=387  Identities=17%  Similarity=0.221  Sum_probs=230.7

Q ss_pred             hhHHHhhcCCCCcEEEccCCCCCCC--CC------------Cccccccc--CCCCCCEEEccCCCCcccCchhhcCCCCC
Q 045291          126 FLQIIGESMPSLKYLSLSGSILGTN--SS------------RILDQGLC--SLVHLQELRMADNDLRGSLPWCLANMTSL  189 (682)
Q Consensus       126 ~~~~l~~~l~~L~~L~L~~~~l~~~--~~------------~i~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  189 (682)
                      +|..+.. +++|++|+|++|.+...  ..            .+|. .++  ++++|++|++++|.+.+.+|..++++++|
T Consensus       198 ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          198 VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            5555554 66666666666655220  00            0332 444  55555555555555555555555555555


Q ss_pred             CEEeccCCc-ccc-ccCCchhccc------CCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCC
Q 045291          190 RILDVSFNQ-LTG-SISSSPLVHL------TSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA  261 (682)
Q Consensus       190 ~~L~L~~n~-l~~-~i~~~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  261 (682)
                      ++|++++|+ +++ .+ |..+..+      ++|++|++++|.++ .                                  
T Consensus       276 ~~L~Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~l~-~----------------------------------  319 (636)
T 4eco_A          276 QLINVACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNNLK-T----------------------------------  319 (636)
T ss_dssp             CEEECTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSCCS-S----------------------------------
T ss_pred             CEEECcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCcCC-c----------------------------------
Confidence            555555555 554 34 3444433      45555555555444 2                                  


Q ss_pred             CcccccceeccccCCCCCCCCc--ccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCC
Q 045291          262 PNFQLNRLLLSSSYGDGFIFPK--FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRR  339 (682)
Q Consensus       262 ~~~~l~~l~l~~~~~~~~~~~~--~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  339 (682)
                                         +|.  .+..+++|+.|++++|.+.+.+| . +..+++|++|++++|.+. ..+..+..+++
T Consensus       320 -------------------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  377 (636)
T 4eco_A          320 -------------------FPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTE  377 (636)
T ss_dssp             -------------------CCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred             -------------------cCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence                               233  44555566666666666655555 2 455666666666666666 23344566666


Q ss_pred             -ccEEEccCCcCCCCCChhhhh-cCCCceEEEecCCcCCcCCCcccC-------CCCCCCEEEccCCcCCCcCchhhhhC
Q 045291          340 -LRFLDVSNNNFQGHMPVEIGD-ILPSLFSFNISTNALHGSIPSSFG-------NMKFLQILDLSNNHLTGEIPEYLAVG  410 (682)
Q Consensus       340 -L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~  410 (682)
                       |++|++++|.++ .+|..+.. .+++|+.|++++|.+.+..|..|.       .+++|++|++++|.+. .+|..++..
T Consensus       378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~  455 (636)
T 4eco_A          378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFST  455 (636)
T ss_dssp             TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHT
T ss_pred             cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHcc
Confidence             777777777776 66654433 134788888888888877777776       6778888888888887 788877777


Q ss_pred             CCCCCEEEccCCcCCCcccccCCCCC-------CccEEECCCCcCcccCCcccc--CCCCCCEEeccCCcCCCCchhhhc
Q 045291          411 CVNLNSLALSNNNLQGHMFSRNFNLT-------NLKWLLLEGNRFVGEIPQSLS--KCSSLEGLYLNNNSLSGKIPRWLG  481 (682)
Q Consensus       411 ~~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~  481 (682)
                      +++|+.|++++|+++......+....       +|++|++++|.+. .+|..+.  .+++|++|++++|++.+ +|..+.
T Consensus       456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~  533 (636)
T 4eco_A          456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL  533 (636)
T ss_dssp             TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred             CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence            88888888888888744333332222       5666666666655 3444443  55556666666665554 455555


Q ss_pred             CCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCE
Q 045291          482 NLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEV  561 (682)
Q Consensus       482 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  561 (682)
                      .+++|++|+|++|+                  ++++|++.+ .+|..+..+++|++|++++|++. .+|..+.  ++|+.
T Consensus       534 ~l~~L~~L~Ls~N~------------------~ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~  591 (636)
T 4eco_A          534 NSSTLKGFGIRNQR------------------DAQGNRTLR-EWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISV  591 (636)
T ss_dssp             GCSSCCEEECCSCB------------------CTTCCBCCC-CCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCE
T ss_pred             cCCCCCEEECCCCc------------------ccccCcccc-cChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCE
Confidence            55555555554443                  235666665 56777777888888888888884 5665544  67888


Q ss_pred             EEccCccCcccCCccccc--ccccCcccccCCCCCCCCC
Q 045291          562 FSVAYNNLSGEIPEWTAQ--FATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       562 L~l~~n~l~~~~~~~~~~--~~~l~~~~~~~n~~~c~~~  598 (682)
                      |++++|++.+.....+..  ......+.+......|+|+
T Consensus       592 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             EECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             EECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence            888888877644332222  1222344445555556654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.1e-44  Score=399.44  Aligned_cols=544  Identities=21%  Similarity=0.227  Sum_probs=277.0

Q ss_pred             CccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccC
Q 045291           21 SKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLR  100 (682)
Q Consensus        21 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~  100 (682)
                      ..+|..+  .+++++||||+|+|+.+.   +.+|.++++|++|+|++|.+++..+..                       
T Consensus        44 ~~vP~~l--p~~~~~LdLs~N~i~~l~---~~~f~~l~~L~~L~Ls~N~i~~i~~~~-----------------------   95 (635)
T 4g8a_A           44 YKIPDNL--PFSTKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRCEIQTIEDGA-----------------------   95 (635)
T ss_dssp             SSCCSSS--CTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTCCCCEECTTT-----------------------
T ss_pred             CccCCCC--CcCCCEEEeeCCCCCCCC---HHHHhCCCCCCEEECCCCcCCCcChhH-----------------------
Confidence            3445433  236677777777776662   336667777777777776665433333                       


Q ss_pred             CCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc-cC
Q 045291          101 GQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SL  179 (682)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~  179 (682)
                         |.++++|++|+|++|+  +. .++...+.++++|++|++++|.+..    +++..|+++++|++|++++|.+++ ..
T Consensus        96 ---f~~L~~L~~L~Ls~N~--l~-~l~~~~f~~L~~L~~L~Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~  165 (635)
T 4g8a_A           96 ---YQSLSHLSTLILTGNP--IQ-SLALGAFSGLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKL  165 (635)
T ss_dssp             ---TTTCTTCCEEECTTCC--CC-EECGGGGTTCTTCCEEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred             ---hcCCCCCCEEEccCCc--CC-CCCHHHhcCCCCCCEEECCCCcCCC----CChhhhhcCcccCeeccccCccccCCC
Confidence               4555555555555532  22 2333222225555555555555544    444445555555555555555543 23


Q ss_pred             chhhcCCCCCCEEeccCCccccccCCchhcccCCCc----EEecCCCcCccccCccccccCCCCcEEEccCCcccccccc
Q 045291          180 PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIE----MLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQ  255 (682)
Q Consensus       180 ~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  255 (682)
                      |..+..+++|++|++++|+++ .+.+..+..+.+++    .++++.|.++.. +.. ......++.+++.+|........
T Consensus       166 ~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i-~~~-~~~~~~~~~l~l~~n~~~~~~~~  242 (635)
T 4g8a_A          166 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPG-AFKEIRLHKLTLRNNFDSLNVMK  242 (635)
T ss_dssp             CGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTT-TTTTCEEEEEEEESCCSSHHHHH
T ss_pred             chhhccchhhhhhcccCcccc-ccccccccchhhhhhhhhhhhcccCccccc-Ccc-cccchhhhhhhhhcccccccccc
Confidence            455555555555555555555 23244444433322    455555555421 111 11222334444444432211100


Q ss_pred             cCCCCCCcccccceeccc---cCCCCCCCCcccccCCCCCEEEcCCCCCcC---cCchHHHhcCCCCcEEEcCCCCCccc
Q 045291          256 SHSLTAPNFQLNRLLLSS---SYGDGFIFPKFLYHQHDLEFVDLSHIKMNG---EFPTWLLENNAKLETLFLINDSIGGP  329 (682)
Q Consensus       256 ~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~---~~~~~~~~~~~~L~~L~l~~~~l~~~  329 (682)
                      ..........+..+....   ...........+.....+...++..+....   ..+.. +.....++.+.+.++.+...
T Consensus       243 ~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~  321 (635)
T 4g8a_A          243 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTIERV  321 (635)
T ss_dssp             HHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEEEEC
T ss_pred             hhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh-hhhhcccccccccccccccc
Confidence            000000001111111100   001111112222333333433333322111   11111 33445566666665555443


Q ss_pred             CCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCC--cCchhh
Q 045291          330 FRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG--EIPEYL  407 (682)
Q Consensus       330 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~  407 (682)
                      ..  +.....++.|++.+|.+.+ ++..   .++.|+.+++..|......  ....+++|+.+++++|.+..  ..+...
T Consensus       322 ~~--~~~~~~L~~L~l~~~~~~~-~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~  393 (635)
T 4g8a_A          322 KD--FSYNFGWQHLELVNCKFGQ-FPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSD  393 (635)
T ss_dssp             GG--GGSCCCCSEEEEESCEESS-CCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred             cc--cccchhhhhhhcccccccC-cCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccch
Confidence            22  2334456666666666542 2211   2456666666666554322  23355666666666665531  122222


Q ss_pred             hhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccC-CccccCCCCCCEEeccCCcCCCCchhhhcCCCCC
Q 045291          408 AVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEI-PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL  486 (682)
Q Consensus       408 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  486 (682)
                      . .+.+|+.+++..+..... +..+..+++|+.++++++...... ...+..+++++.++++.|.+.+..+..+..+++|
T Consensus       394 ~-~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L  471 (635)
T 4g8a_A          394 F-GTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  471 (635)
T ss_dssp             H-SCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             h-hhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence            2 456666666666655432 233445666666666665544332 2445566666666666666666666666666666


Q ss_pred             CeecCCCCcC-cCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEcc
Q 045291          487 QYIIMPNNHL-EGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVA  565 (682)
Q Consensus       487 ~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  565 (682)
                      +.|++++|.+ .+..|..|..+++|++|+|++|++++ ..|..|+++++|++|+|++|++++..|..+..+++|++|+++
T Consensus       472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  550 (635)
T 4g8a_A          472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  550 (635)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred             hhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence            6666666653 23455566666666666666666664 455666666666666666666666666666666666666666


Q ss_pred             CccCcccCCcccccc-cccCcccccCCCCCCCCCC-------------------CCCCCCCCCCCCCCCCCC
Q 045291          566 YNNLSGEIPEWTAQF-ATFNESSYEGNIFLCGLPL-------------------PICISPATMPEASIGNEQ  617 (682)
Q Consensus       566 ~n~l~~~~~~~~~~~-~~l~~~~~~~n~~~c~~~~-------------------~~~~~~~~~~~~~~~~~~  617 (682)
                      +|++++..|+.+..+ .+++.+++++|||.|+|.+                   ..|.+|+..++.++...+
T Consensus       551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~  622 (635)
T 4g8a_A          551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN  622 (635)
T ss_dssp             TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred             CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence            666666666655554 4566666666666666643                   257778877776554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.6e-44  Score=388.88  Aligned_cols=280  Identities=21%  Similarity=0.233  Sum_probs=134.1

Q ss_pred             ccccCCCCCEEEcCCCC-------CcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCC---CCCCCccEEEccCCcCCCC
Q 045291          284 FLYHQHDLEFVDLSHIK-------MNGEFPTWLLENNAKLETLFLINDSIGGPFRLPI---HPHRRLRFLDVSNNNFQGH  353 (682)
Q Consensus       284 ~l~~~~~L~~L~ls~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~n~~~~~  353 (682)
                      .+..+++|+.+++++|.       +.+.+|.  +..+++|+.|+++++.+.+.....+   ...++|++|++++|.+.+.
T Consensus       185 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  262 (520)
T 2z7x_B          185 SVKTVANLELSNIKCVLEDNKCSYFLSILAK--LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ  262 (520)
T ss_dssp             CCTTCSEEEECCEEECCSTTTTHHHHHHHHG--GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred             hhhcccceeeccccccccccccceeecchhh--hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence            34556677777777775       3333331  4555666666665555443111000   0023455555555555544


Q ss_pred             CChhhh----hcCCCceEEEecCCcCCcCCC-cccCCC---CCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCC
Q 045291          354 MPVEIG----DILPSLFSFNISTNALHGSIP-SSFGNM---KFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ  425 (682)
Q Consensus       354 ~~~~~~----~~l~~L~~L~l~~n~i~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~  425 (682)
                      +|..++    ..+++|+.+++++|.+  ..| ..+..+   ++|++|++++|.+. .++.  ...+++|++|++++|+++
T Consensus       263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~  337 (520)
T 2z7x_B          263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPFLHLDFSNNLLT  337 (520)
T ss_dssp             CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCCEEECCSSCCC
T ss_pred             cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-cccc--hhhCCcccEEEeECCccC
Confidence            554441    2245555555555554  122 222222   34555555555543 2210  123455555555555555


Q ss_pred             CcccccCCCCCCccEEECCCCcCcc--cCCccccCCCCCCEEeccCCcCCCCchh-hhcCCCCCCeecCCCCcCcCCcch
Q 045291          426 GHMFSRNFNLTNLKWLLLEGNRFVG--EIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQYIIMPNNHLEGPIPV  502 (682)
Q Consensus       426 ~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~  502 (682)
                      +..+..+..+++|++|++++|.+.+  ..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..+.
T Consensus       338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  417 (520)
T 2z7x_B          338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR  417 (520)
T ss_dssp             TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred             hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh
Confidence            5444555555555555555555543  2334455555555555555555542332 244455555555555555444433


Q ss_pred             hccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          503 EFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       503 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      .+.  ++|+.|++++|+++.  +|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.|+
T Consensus       418 ~l~--~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          418 CLP--PRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SCC--TTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhc--ccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            332  455555555555542  33333455555555555555553222234455555555555555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.8e-43  Score=391.53  Aligned_cols=544  Identities=20%  Similarity=0.189  Sum_probs=396.5

Q ss_pred             CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCc
Q 045291            5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS   84 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L   84 (682)
                      +++|+|+|++|.+  ....+.+|.++++|++|||++|+|+++.   +.+|.++++|++|+|++|+++...+..+.++.+|
T Consensus        52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~---~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEEC---TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcC---hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            3799999999999  5555678999999999999999999884   4589999999999999999987777778888888


Q ss_pred             ceeeccCccccCcccCCCCCCCCCCCceeecCCCcccccc-chhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCC
Q 045291           85 LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT-SFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLV  163 (682)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~  163 (682)
                      +++++.+|...+ ++.. .|+++++|++|++++|.  +.. ..|..+.. +++|++|++++|.+..    +++.++..+.
T Consensus       127 ~~L~Ls~N~l~~-l~~~-~~~~L~~L~~L~Ls~N~--l~~~~~~~~~~~-l~~L~~L~L~~N~l~~----~~~~~l~~L~  197 (635)
T 4g8a_A          127 QKLVAVETNLAS-LENF-PIGHLKTLKELNVAHNL--IQSFKLPEYFSN-LTNLEHLDLSSNKIQS----IYCTDLRVLH  197 (635)
T ss_dssp             CEEECTTSCCCC-STTC-CCTTCTTCCEEECCSSC--CCCCCCCGGGGG-CTTCCEEECCSSCCCE----ECGGGGHHHH
T ss_pred             CEEECCCCcCCC-CChh-hhhcCcccCeeccccCc--cccCCCchhhcc-chhhhhhcccCccccc----cccccccchh
Confidence            888888887654 4432 47888888888888843  332 23444444 8888888888888754    4444554443


Q ss_pred             C----CCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccc-----cCccccc
Q 045291          164 H----LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIP-----ISLEPLF  234 (682)
Q Consensus       164 ~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~  234 (682)
                      +    +..++++.|.+....+..+ ....++.+++.+|.....+.+..+..+..++...+..+.....     .....+.
T Consensus       198 ~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~  276 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE  276 (635)
T ss_dssp             TCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred             hhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence            3    3367777787775444443 3345667777777654333344566666666655543322111     1111122


Q ss_pred             cCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCC
Q 045291          235 NHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNA  314 (682)
Q Consensus       235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~  314 (682)
                      ....+....+..+...                         ......+..+....+++.+++..+.+.... +  +....
T Consensus       277 ~~~~l~~~~l~~~~~~-------------------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~--~~~~~  328 (635)
T 4g8a_A          277 GLCNLTIEEFRLAYLD-------------------------YYLDGIIDLFNCLTNVSSFSLVSVTIERVK-D--FSYNF  328 (635)
T ss_dssp             GGGGSEEEEEEEECCC-------------------------SCEEECTTTTGGGTTCSEEEEESCEEEECG-G--GGSCC
T ss_pred             cccchhhhhhhhhhhc-------------------------ccccchhhhhhhhccccccccccccccccc-c--cccch
Confidence            2233333333222111                         111122334556678889999888876432 2  45678


Q ss_pred             CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCc--CCCcccCCCCCCCEE
Q 045291          315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHG--SIPSSFGNMKFLQIL  392 (682)
Q Consensus       315 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L  392 (682)
                      .++.|++.++.+.....   ..+..|+.+++..|.......  . ..+++|+.+++++|.+..  ..+..+..+.+|+++
T Consensus       329 ~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L  402 (635)
T 4g8a_A          329 GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFS--E-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL  402 (635)
T ss_dssp             CCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBCC--C-CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEE
T ss_pred             hhhhhhcccccccCcCc---ccchhhhhcccccccCCCCcc--c-ccccccccchhhccccccccccccchhhhhhhhhh
Confidence            89999999998876543   346788999999988763322  1 238899999999998863  345566788899999


Q ss_pred             EccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCc-ccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCc
Q 045291          393 DLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH-MFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNS  471 (682)
Q Consensus       393 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  471 (682)
                      ++..+... .++..+ ..+++|+.+++..+..... ....+..+++++.++++.|.+.+..+..+..+++|+.|++++|.
T Consensus       403 ~~~~~~~~-~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~  480 (635)
T 4g8a_A          403 DLSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  480 (635)
T ss_dssp             ECCSCSEE-EECSCC-TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             hccccccc-cccccc-cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence            99999876 444433 4789999999998876544 34567789999999999999998889999999999999999997


Q ss_pred             CC-CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291          472 LS-GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP  550 (682)
Q Consensus       472 ~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  550 (682)
                      +. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++ ..+..|+++++|+.|++++|++++..|
T Consensus       481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB-CCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC-CChhHHhCCCCCCEEECCCCcCCCCCH
Confidence            54 4577889999999999999999999999999999999999999999987 778899999999999999999999999


Q ss_pred             hhhhcC-CCCCEEEccCccCcccCCc-ccccc-cccCcccccCCCCCCCCCCC
Q 045291          551 HQLVEL-KTLEVFSVAYNNLSGEIPE-WTAQF-ATFNESSYEGNIFLCGLPLP  600 (682)
Q Consensus       551 ~~l~~l-~~L~~L~l~~n~l~~~~~~-~~~~~-~~l~~~~~~~n~~~c~~~~~  600 (682)
                      +.+..+ ++|+.|++++|+|.|.|.- |+..| ..-...........|..|..
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~  612 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  612 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTT
T ss_pred             HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchH
Confidence            999888 6899999999999998863 22222 11111112233467877654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.4e-44  Score=386.45  Aligned_cols=465  Identities=17%  Similarity=0.161  Sum_probs=312.6

Q ss_pred             cEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCccee
Q 045291            8 KSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN   87 (682)
Q Consensus         8 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l   87 (682)
                      ++|++++|++   ..+|..+.  ++|++|++++|.+.++.   +..+.++++|++|++++|.+++..|..+.++..|+++
T Consensus         3 ~~l~ls~n~l---~~ip~~~~--~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGL---IHVPKDLS--QKTTILNISQNYISELW---TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCC---SSCCCSCC--TTCSEEECCSSCCCCCC---HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             ceEecCCCCc---cccccccc--ccccEEECCCCcccccC---hhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence            6789999988   35777665  89999999999988873   3578889999999999998876666666655555555


Q ss_pred             eccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCE
Q 045291           88 LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQE  167 (682)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~  167 (682)
                      ++.+|... .+|..    .+++|++|++++                           |.+..  ..+|. .++++++|++
T Consensus        75 ~Ls~N~l~-~lp~~----~l~~L~~L~L~~---------------------------N~l~~--~~~p~-~~~~l~~L~~  119 (520)
T 2z7x_B           75 DLSHNKLV-KISCH----PTVNLKHLDLSF---------------------------NAFDA--LPICK-EFGNMSQLKF  119 (520)
T ss_dssp             ECCSSCCC-EEECC----CCCCCSEEECCS---------------------------SCCSS--CCCCG-GGGGCTTCCE
T ss_pred             ecCCCcee-ecCcc----ccCCccEEeccC---------------------------Ccccc--ccchh-hhccCCcceE
Confidence            55555443 34431    445555555555                           44421  00222 4444444555


Q ss_pred             EEccCCCCcccCchhhcCCCCC--CEEeccCCcc--ccccCCchhcccC-CCcEEecCCCcCccccCccccccCCCCcEE
Q 045291          168 LRMADNDLRGSLPWCLANMTSL--RILDVSFNQL--TGSISSSPLVHLT-SIEMLILSDNHFQIPISLEPLFNHSRLKIF  242 (682)
Q Consensus       168 L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  242 (682)
                      |++++|.+++   ..+..+++|  ++|++++|.+  .+.. +..+..+. +...+++++|.+.+.++...+..+++|+.+
T Consensus       120 L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~-~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L  195 (520)
T 2z7x_B          120 LGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKED-PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS  195 (520)
T ss_dssp             EEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCC-TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred             EEecCcccch---hhccccccceeeEEEeecccccccccc-cccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence            5554444443   223334444  5555555444  3222 23333322 122344444444443333334445555555


Q ss_pred             EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHh--cCCCCcEEE
Q 045291          243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLE--NNAKLETLF  320 (682)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~--~~~~L~~L~  320 (682)
                      ++++|.......                     ...+.+| .+..+++|+.|+++++.+.+..+..+..  ..++|++|+
T Consensus       196 ~l~~n~~~~~~~---------------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          196 NIKCVLEDNKCS---------------------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             CEEECCSTTTTH---------------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             cccccccccccc---------------------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence            554443100000                     0000111 3456667777777777665433322211  245788888


Q ss_pred             cCCCCCcccCCCCC-----CCCCCccEEEccCCcCCCCCC-hhhhhc--CCCceEEEecCCcCCcCCCcccCCCCCCCEE
Q 045291          321 LINDSIGGPFRLPI-----HPHRRLRFLDVSNNNFQGHMP-VEIGDI--LPSLFSFNISTNALHGSIPSSFGNMKFLQIL  392 (682)
Q Consensus       321 l~~~~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~~~--l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  392 (682)
                      +++|.+.+..+..+     ..++.|+.+++++|.+  .+| ..+...  -++|+.|++++|.+....  .+..+++|++|
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L  329 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL  329 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred             eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence            88888876666665     7899999999999998  566 444432  257999999999987433  23688999999


Q ss_pred             EccCCcCCCcCchhhhhCCCCCCEEEccCCcCCC--cccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccC
Q 045291          393 DLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG--HMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNN  469 (682)
Q Consensus       393 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~  469 (682)
                      ++++|++.+.++..+ ..+++|++|++++|++++  ..+..+..+++|++|++++|.+.+.+| ..+..+++|++|++++
T Consensus       330 ~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~  408 (520)
T 2z7x_B          330 DFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS  408 (520)
T ss_dssp             ECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred             EeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence            999999986666655 479999999999999997  445678899999999999999997455 4588899999999999


Q ss_pred             CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCc
Q 045291          470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM  549 (682)
Q Consensus       470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  549 (682)
                      |.+++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|++++ ..+..+..+++|++|++++|++....
T Consensus       409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccC
Confidence            999877776554  79999999999999 566666699999999999999985 44445999999999999999998654


Q ss_pred             h
Q 045291          550 P  550 (682)
Q Consensus       550 ~  550 (682)
                      +
T Consensus       485 ~  485 (520)
T 2z7x_B          485 P  485 (520)
T ss_dssp             H
T ss_pred             C
Confidence            3

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.6e-42  Score=384.39  Aligned_cols=280  Identities=17%  Similarity=0.125  Sum_probs=157.6

Q ss_pred             ccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCC-ccEEEccCCcCCCCCChhhhh-c
Q 045291          284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRR-LRFLDVSNNNFQGHMPVEIGD-I  361 (682)
Q Consensus       284 ~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~-~  361 (682)
                      .+..+++|+.|++++|.+. .+|  .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+|..+.. .
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~  642 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS  642 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred             hhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence            4445555555555555555 444  2455555555555555555 23334555555 666666666665 55543322 1


Q ss_pred             CCCceEEEecCCcCCcCCCccc---C--CCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCC-
Q 045291          362 LPSLFSFNISTNALHGSIPSSF---G--NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNL-  435 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-  435 (682)
                      .++|+.|++++|.+.+..|...   .  .+++|++|++++|.+. .+|..++..+++|+.|++++|++.......+... 
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~  721 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKD  721 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence            1236677777776665444221   1  2346777777777776 6777766667777777777777764333333222 


Q ss_pred             ------CCccEEECCCCcCcccCCcccc--CCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCC
Q 045291          436 ------TNLKWLLLEGNRFVGEIPQSLS--KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL  507 (682)
Q Consensus       436 ------~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  507 (682)
                            ++|+.|++++|.+. .+|..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|+|++|+            
T Consensus       722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------  787 (876)
T 4ecn_A          722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------  787 (876)
T ss_dssp             SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------
T ss_pred             ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------
Confidence                  25666666666665 4444444  56666666666666654 45555556666666665532            


Q ss_pred             CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCccc
Q 045291          508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS  587 (682)
Q Consensus       508 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~  587 (682)
                            ++++|++.+ .+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+..++.........
T Consensus       788 ------~ls~N~l~~-~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~  857 (876)
T 4ecn_A          788 ------DAEGNRILR-QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYV  857 (876)
T ss_dssp             ------CTTCCBCCC-CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCE
T ss_pred             ------Ccccccccc-cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchhee
Confidence                  223455554 5566666666777777777766 35555443  4677777777766654444444433334444


Q ss_pred             ccCCCC
Q 045291          588 YEGNIF  593 (682)
Q Consensus       588 ~~~n~~  593 (682)
                      +.+|+.
T Consensus       858 L~~n~~  863 (876)
T 4ecn_A          858 LLYDKT  863 (876)
T ss_dssp             EECCTT
T ss_pred             ecCCCc
Confidence            444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.3e-41  Score=381.51  Aligned_cols=387  Identities=17%  Similarity=0.179  Sum_probs=262.4

Q ss_pred             ccccCcccCCCCCCCCCCCceeecCCCcccccc-----------------chhHHHh--hcCCCCcEEEccCCCC-CCCC
Q 045291           92 YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT-----------------SFLQIIG--ESMPSLKYLSLSGSIL-GTNS  151 (682)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------------~~~~~l~--~~l~~L~~L~L~~~~l-~~~~  151 (682)
                      |...+ +|..  ++++++|++|++++  +.+.+                 .+|..+.  . +++|++|+|++|.+ +.  
T Consensus       435 N~L~~-IP~~--l~~L~~L~~L~Ls~--N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~-L~~L~~L~Ls~N~l~~~--  506 (876)
T 4ecn_A          435 NRITF-ISKA--IQRLTKLQIIYFAN--SPFTYDNIAVDWEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQ--  506 (876)
T ss_dssp             CEEEE-ECGG--GGGCTTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEESCTTCCS--
T ss_pred             Ccccc-hhHH--HhcCCCCCEEECcC--CcCCCCcccccccccccccccccCChhhhhcc-CCCCCEEECcCCCCCcc--
Confidence            34443 7765  88999999999999  44555                 3777764  5 99999999999987 55  


Q ss_pred             CCcccccccCCCCCCEEEccCCC-Ccc-cCchhhcCCC-------CCCEEeccCCccccccCCc--hhcccCCCcEEecC
Q 045291          152 SRILDQGLCSLVHLQELRMADND-LRG-SLPWCLANMT-------SLRILDVSFNQLTGSISSS--PLVHLTSIEMLILS  220 (682)
Q Consensus       152 ~~i~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~i~~~--~~~~l~~L~~L~L~  220 (682)
                        +|. .++++++|++|++++|. +++ .+|..++.++       +|++|++++|.++ .+ |.  .+..+++|+.|+++
T Consensus       507 --iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i-p~~~~l~~L~~L~~L~Ls  581 (876)
T 4ecn_A          507 --LPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF-PASASLQKMVKLGLLDCV  581 (876)
T ss_dssp             --CCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC-CCHHHHTTCTTCCEEECT
T ss_pred             --ChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc-CChhhhhcCCCCCEEECC
Confidence              775 89999999999999998 887 7887666554       9999999999999 88 56  89999999999999


Q ss_pred             CCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCC-CCEEEcCCC
Q 045291          221 DNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHD-LEFVDLSHI  299 (682)
Q Consensus       221 ~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~-L~~L~ls~~  299 (682)
                      +|.++ .++  .+..+++|+.|++++|.+.                             .+|..+..+++ |+.|++++|
T Consensus       582 ~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-----------------------------~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          582 HNKVR-HLE--AFGTNVKLTDLKLDYNQIE-----------------------------EIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             TSCCC-BCC--CCCTTSEESEEECCSSCCS-----------------------------CCCTTSCEECTTCCEEECCSS
T ss_pred             CCCcc-cch--hhcCCCcceEEECcCCccc-----------------------------cchHHHhhccccCCEEECcCC
Confidence            99998 555  5778888888888887765                             24555666666 777777777


Q ss_pred             CCcCcCchHHHhcCC--CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhh-cCCCceEEEecCCcCC
Q 045291          300 KMNGEFPTWLLENNA--KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD-ILPSLFSFNISTNALH  376 (682)
Q Consensus       300 ~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~i~  376 (682)
                      .+. .+|.. +...+  +|+.|++++|.+.+..+...                     ..... .+++|+.|++++|.+.
T Consensus       630 ~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~---------------------~~l~~~~~~~L~~L~Ls~N~L~  686 (876)
T 4ecn_A          630 KLK-YIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNIS---------------------CSMDDYKGINASTVTLSYNEIQ  686 (876)
T ss_dssp             CCC-SCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCS---------------------SCTTTCCCCCEEEEECCSSCCC
T ss_pred             CCC-cCchh-hhccccCCCCEEECcCCcCCCccccch---------------------hhhccccCCCcCEEEccCCcCC
Confidence            776 55543 22222  25555555555544322110                     00000 1234555555555555


Q ss_pred             cCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCC-------CCCCEEEccCCcCCCcccccCC--CCCCccEEECCCCc
Q 045291          377 GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGC-------VNLNSLALSNNNLQGHMFSRNF--NLTNLKWLLLEGNR  447 (682)
Q Consensus       377 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~  447 (682)
                      ...+..+..+++|++|++++|++. .+|...+...       ++|+.|++++|+++ .+|..+.  .+++|+.|++++|.
T Consensus       687 ~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~  764 (876)
T 4ecn_A          687 KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC  764 (876)
T ss_dssp             SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC
T ss_pred             ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC
Confidence            322223334555555555555554 4554444322       26777777777666 3444444  67778888888888


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291          448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS  527 (682)
Q Consensus       448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~  527 (682)
                      +.+ +|..+..+++|+.|++++|+                  ++++|.+.+..|..+..+++|+.|+|++|++.  .+|.
T Consensus       765 L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~--~Ip~  823 (876)
T 4ecn_A          765 FSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR--KVDE  823 (876)
T ss_dssp             CSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC--BCCS
T ss_pred             CCc-cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCCC--ccCH
Confidence            775 57777788888888888775                  55667777777777777777777777777774  3555


Q ss_pred             hccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291          528 TFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG  571 (682)
Q Consensus       528 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  571 (682)
                      .+.  ++|+.|+|++|++....+..+.....+..+.+.+|++..
T Consensus       824 ~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          824 KLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             hhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            443  577778888777776655555554455666677776653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.5e-41  Score=373.92  Aligned_cols=414  Identities=18%  Similarity=0.247  Sum_probs=340.3

Q ss_pred             CCCcEEEccCCCC-CCCCCCcccccccCCCCCCEEEccCCCCc------c---------------------------cCc
Q 045291          135 PSLKYLSLSGSIL-GTNSSRILDQGLCSLVHLQELRMADNDLR------G---------------------------SLP  180 (682)
Q Consensus       135 ~~L~~L~L~~~~l-~~~~~~i~~~~l~~l~~L~~L~L~~n~l~------~---------------------------~~~  180 (682)
                      .+++.|+|+++.+ +.    +|+ +++++++|++|+|++|.+.      +                           ..|
T Consensus        81 ~~V~~L~L~~~~l~g~----lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~  155 (636)
T 4eco_A           81 GRVTGLSLEGFGASGR----VPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR  155 (636)
T ss_dssp             CCEEEEECTTSCCEEE----ECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred             CCEEEEEecCcccCCc----CCh-HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCch
Confidence            5799999999999 56    775 8999999999999999652      1                           001


Q ss_pred             hhhc-------------------CCCCCCEEecc--CCccccccCCchhcccCCCcEEecCCCcCccc------------
Q 045291          181 WCLA-------------------NMTSLRILDVS--FNQLTGSISSSPLVHLTSIEMLILSDNHFQIP------------  227 (682)
Q Consensus       181 ~~~~-------------------~l~~L~~L~L~--~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~------------  227 (682)
                      ..+.                   ....++.+.+.  .|.+++ + |..+.++++|++|++++|.+++.            
T Consensus       156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  233 (636)
T 4eco_A          156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE  233 (636)
T ss_dssp             GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-E-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred             hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-C-CHHHhcccCCCEEECcCCccccccccccccccccc
Confidence            1111                   11122222222  567886 7 77899999999999999999874            


Q ss_pred             -----cCccccc--cCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCC
Q 045291          228 -----ISLEPLF--NHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIK  300 (682)
Q Consensus       228 -----~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~  300 (682)
                           +|.. ++  .+++|++|++++|.+.+                            .+|..+..+++|+.|++++|+
T Consensus       234 ~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~----------------------------~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          234 YAQQYKTED-LKWDNLKDLTDVEVYNCPNLT----------------------------KLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             HHHHHTTSC-CCGGGCTTCCEEEEECCTTCS----------------------------SCCTTTTTCSSCCEEECTTCT
T ss_pred             hhcccCchh-hhhcccCCCCEEEecCCcCCc----------------------------cChHHHhcCCCCCEEECcCCC
Confidence                 5543 56  88999999998887653                            467888999999999999998


Q ss_pred             -CcC-cCchHHHhcC------CCCcEEEcCCCCCcccCCC--CCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEe
Q 045291          301 -MNG-EFPTWLLENN------AKLETLFLINDSIGGPFRL--PIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI  370 (682)
Q Consensus       301 -~~~-~~~~~~~~~~------~~L~~L~l~~~~l~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  370 (682)
                       +++ .+|..+ ..+      ++|++|++++|.+. ..+.  .+..+++|++|++++|.+.|.+| .+. .+++|++|++
T Consensus       285 ~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L  360 (636)
T 4eco_A          285 GISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNL  360 (636)
T ss_dssp             TSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEEC
T ss_pred             CCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEEC
Confidence             887 788773 444      89999999999999 4455  68899999999999999998888 444 4899999999


Q ss_pred             cCCcCCcCCCcccCCCCC-CCEEEccCCcCCCcCchhhhh-CCCCCCEEEccCCcCCCcccccCC-------CCCCccEE
Q 045291          371 STNALHGSIPSSFGNMKF-LQILDLSNNHLTGEIPEYLAV-GCVNLNSLALSNNNLQGHMFSRNF-------NLTNLKWL  441 (682)
Q Consensus       371 ~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L  441 (682)
                      ++|.++ .+|..+..+++ |++|++++|.+. .+|..+.. .+++|+.|++++|++.+..|..+.       .+++|++|
T Consensus       361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L  438 (636)
T 4eco_A          361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI  438 (636)
T ss_dssp             CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred             CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence            999998 77778999999 999999999998 88875431 134899999999999998888777       78899999


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCC-------CCCeecCCCCcCcCCcchhcc--CCCCCCE
Q 045291          442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT-------RLQYIIMPNNHLEGPIPVEFC--QLDLLQI  512 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~--~l~~L~~  512 (682)
                      ++++|.+....+..+..+++|++|++++|.+....+..+....       +|++|+|++|.++ .+|..+.  .+++|+.
T Consensus       439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~  517 (636)
T 4eco_A          439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVG  517 (636)
T ss_dssp             ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCE
T ss_pred             ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCE
Confidence            9999999966566677899999999999999944444444333       9999999999999 5666665  9999999


Q ss_pred             EEccCCcCCCCcchhhccCCCCCcEEEC------CCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcc
Q 045291          513 LDISDNNISGRLIPSTFSNLKQIESLDL------SYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES  586 (682)
Q Consensus       513 L~Ls~n~~~~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~  586 (682)
                      |+|++|++++  +|..+..+++|+.|++      ++|++.+.+|..+..+++|+.|++++|++ +.+|..+.  ++++.+
T Consensus       518 L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L  592 (636)
T 4eco_A          518 IDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVL  592 (636)
T ss_dssp             EECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEE
T ss_pred             EECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEE
Confidence            9999999986  7888899999999999      56888889999999999999999999999 57887544  799999


Q ss_pred             cccCCCCCCC
Q 045291          587 SYEGNIFLCG  596 (682)
Q Consensus       587 ~~~~n~~~c~  596 (682)
                      ++++|++.|-
T Consensus       593 ~Ls~N~l~~~  602 (636)
T 4eco_A          593 DIKDNPNISI  602 (636)
T ss_dssp             ECCSCTTCEE
T ss_pred             ECcCCCCccc
Confidence            9999998873

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.9e-41  Score=367.95  Aligned_cols=460  Identities=17%  Similarity=0.178  Sum_probs=266.6

Q ss_pred             CCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCC
Q 045291           30 FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKS  109 (682)
Q Consensus        30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~  109 (682)
                      +...+++|+++|+++.+    |..+.  ++|++|++++|.+++..+..                          |.++++
T Consensus        30 ~~~~~~l~ls~~~L~~i----p~~~~--~~L~~L~Ls~N~i~~~~~~~--------------------------~~~l~~   77 (562)
T 3a79_B           30 NELESMVDYSNRNLTHV----PKDLP--PRTKALSLSQNSISELRMPD--------------------------ISFLSE   77 (562)
T ss_dssp             ---CCEEECTTSCCCSC----CTTSC--TTCCEEECCSSCCCCCCGGG--------------------------TTTCTT
T ss_pred             cCCCcEEEcCCCCCccC----CCCCC--CCcCEEECCCCCccccChhh--------------------------hccCCC
Confidence            44457777777777766    44443  67777777777665433332                          445555


Q ss_pred             CceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc-cCchhhcCCCC
Q 045291          110 LEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTS  188 (682)
Q Consensus       110 L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~  188 (682)
                      |++|++++  +.+.+..|..+.. +++|++|++++|.+..    +|..   .+++|++|++++|.+++ ..|..|+++++
T Consensus        78 L~~L~Ls~--N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~----lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           78 LRVLRLSH--NRIRSLDFHVFLF-NQDLEYLDVSHNRLQN----ISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTK  147 (562)
T ss_dssp             CCEEECCS--CCCCEECTTTTTT-CTTCCEEECTTSCCCE----ECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred             ccEEECCC--CCCCcCCHHHhCC-CCCCCEEECCCCcCCc----cCcc---ccccCCEEECCCCCccccCchHhhcccCc
Confidence            55555555  2333333333333 6666666666666654    5542   56677777777777665 23466777777


Q ss_pred             CCEEeccCCccccccCCchhcccCCC--cEEecCCCcC--ccccCccccccCC-CCcEEEccCCcccccccccCCCCCCc
Q 045291          189 LRILDVSFNQLTGSISSSPLVHLTSI--EMLILSDNHF--QIPISLEPLFNHS-RLKIFYADNNELNAEITQSHSLTAPN  263 (682)
Q Consensus       189 L~~L~L~~n~l~~~i~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~  263 (682)
                      |++|++++|.+++    ..+..+++|  ++|++++|.+  ++..+. .+..+. ..-.++++.|.+.+.           
T Consensus       148 L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~-----------  211 (562)
T 3a79_B          148 LTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSLFSV-----------  211 (562)
T ss_dssp             CCEEEEECSBCCT----TTTGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEEEEEECSSSCCCC-----------
T ss_pred             ccEEecCCCcccc----CchhhhhhceeeEEEeecccccccccCcc-cccccCcceEEEEecCccchhh-----------
Confidence            7777777777662    234444544  7777777766  433221 222222 011233444433321           


Q ss_pred             ccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCC-----cCcCchHHHhcCCCCcEEEcCCCCCcccCCC---CCC
Q 045291          264 FQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKM-----NGEFPTWLLENNAKLETLFLINDSIGGPFRL---PIH  335 (682)
Q Consensus       264 ~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~  335 (682)
                                      .....+..+++|+.+++++|..     .+.+ . .+..++.++.+++.++.+.+....   ...
T Consensus       212 ----------------~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  273 (562)
T 3a79_B          212 ----------------QVNMSVNALGHLQLSNIKLNDENCQRLMTFL-S-ELTRGPTLLNVTLQHIETTWKCSVKLFQFF  273 (562)
T ss_dssp             ----------------CCEEEESSEEEEEEEEEECCSTTHHHHHHHH-H-HHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred             ----------------hhhhcccccceEEEecccccccccchHHHHH-H-HHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence                            1122344567788888888752     1111 1 256677777777776655431100   001


Q ss_pred             CCCCccEEEccCCcCCCCCChhhh----hcCCCceEEEecCCcCCcCCC-cccCC---CCCCCEEEccCCcCCCcCchhh
Q 045291          336 PHRRLRFLDVSNNNFQGHMPVEIG----DILPSLFSFNISTNALHGSIP-SSFGN---MKFLQILDLSNNHLTGEIPEYL  407 (682)
Q Consensus       336 ~~~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~i~~~~~-~~~~~---l~~L~~L~l~~n~~~~~~~~~~  407 (682)
                      ..++|++|++++|.+.+.+|..++    ..++.|+.+++..+.+  ..| ..+..   ..+|++|++++|.+. .++  .
T Consensus       274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~  348 (562)
T 3a79_B          274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-HMV--C  348 (562)
T ss_dssp             TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--C
T ss_pred             hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-ccc--C
Confidence            123677777777777766666542    2244444444444444  122 11111   245777777777664 222  1


Q ss_pred             hhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCccc--CCccccCCCCCCEEeccCCcCCCCch-hhhcCCC
Q 045291          408 AVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGE--IPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLT  484 (682)
Q Consensus       408 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~  484 (682)
                      ...+++|++|++++|++++..+..+..+++|++|++++|.+.+.  .|..+.++++|++|++++|.+.+.+| ..+..++
T Consensus       349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            13567777777777777776667777777777777777777653  24556777777777777777776333 3466677


Q ss_pred             CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEc
Q 045291          485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV  564 (682)
Q Consensus       485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  564 (682)
                      +|++|++++|++++..+..+.  ++|+.|++++|+++.  +|..+..+++|++|++++|+++...+..+..+++|+.|++
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence            777777777777655444333  577777777777763  4544457777777777777777433333667777777777


Q ss_pred             cCccCcccCC
Q 045291          565 AYNNLSGEIP  574 (682)
Q Consensus       565 ~~n~l~~~~~  574 (682)
                      ++|++.|.|+
T Consensus       505 ~~N~~~c~c~  514 (562)
T 3a79_B          505 HDNPWDCTCP  514 (562)
T ss_dssp             CSCCBCCCHH
T ss_pred             cCCCcCCCcc
Confidence            7777777665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.4e-40  Score=364.32  Aligned_cols=466  Identities=17%  Similarity=0.157  Sum_probs=304.5

Q ss_pred             CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccC
Q 045291            4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP   83 (682)
Q Consensus         4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~   83 (682)
                      +...++++++++++   ..+|..+.  ++|++|++++|.+.++.   +.++.++++|++|++++|.+++..+..+.++..
T Consensus        30 ~~~~~~l~ls~~~L---~~ip~~~~--~~L~~L~Ls~N~i~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           30 NELESMVDYSNRNL---THVPKDLP--PRTKALSLSQNSISELR---MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             ---CCEEECTTSCC---CSCCTTSC--TTCCEEECCSSCCCCCC---GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             cCCCcEEEcCCCCC---ccCCCCCC--CCcCEEECCCCCccccC---hhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence            34558999999998   44777664  89999999999999983   458999999999999999988665655555555


Q ss_pred             cceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcc-cccccCC
Q 045291           84 SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRIL-DQGLCSL  162 (682)
Q Consensus        84 L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~-~~~l~~l  162 (682)
                      |+++++.+|... .+|..    .                           +++|++|++++|.+..    ++ +..++++
T Consensus       102 L~~L~Ls~N~l~-~lp~~----~---------------------------l~~L~~L~Ls~N~l~~----l~~p~~~~~l  145 (562)
T 3a79_B          102 LEYLDVSHNRLQ-NISCC----P---------------------------MASLRHLDLSFNDFDV----LPVCKEFGNL  145 (562)
T ss_dssp             CCEEECTTSCCC-EECSC----C---------------------------CTTCSEEECCSSCCSB----CCCCGGGGGC
T ss_pred             CCEEECCCCcCC-ccCcc----c---------------------------cccCCEEECCCCCccc----cCchHhhccc
Confidence            555555554432 33321    3                           4455555555554422    22 1244555


Q ss_pred             CCCCEEEccCCCCcccCchhhcCCCCC--CEEeccCCcc--ccccCCchhcccC-CCcEEecCCCcCccccCccccccCC
Q 045291          163 VHLQELRMADNDLRGSLPWCLANMTSL--RILDVSFNQL--TGSISSSPLVHLT-SIEMLILSDNHFQIPISLEPLFNHS  237 (682)
Q Consensus       163 ~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~  237 (682)
                      ++|++|++++|.++..   .+..+++|  ++|++++|.+  ++.. +..+..+. ..-.+++++|.+.+.++...+..++
T Consensus       146 ~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~-~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~  221 (562)
T 3a79_B          146 TKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGE-TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG  221 (562)
T ss_dssp             TTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSS-CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEE
T ss_pred             CcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccC-cccccccCcceEEEEecCccchhhhhhhcccccc
Confidence            5555555555554432   22222333  5555555554  3222 33333322 1113344555544433333344455


Q ss_pred             CCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHH--HhcCCC
Q 045291          238 RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWL--LENNAK  315 (682)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~--~~~~~~  315 (682)
                      +|+.+++++|.......                        ......+..++.++.++++++.+.+.....+  ....++
T Consensus       222 ~L~~L~l~~n~~~~~~l------------------------~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~  277 (562)
T 3a79_B          222 HLQLSNIKLNDENCQRL------------------------MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP  277 (562)
T ss_dssp             EEEEEEEECCSTTHHHH------------------------HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred             eEEEecccccccccchH------------------------HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence            55555555543110000                        0011223445555666665555443211111  112347


Q ss_pred             CcEEEcCCCCCcccCCCCC-----CCCCCccEEEccCCcCCCCCCh-hhhhc--CCCceEEEecCCcCCcCCCcccCCCC
Q 045291          316 LETLFLINDSIGGPFRLPI-----HPHRRLRFLDVSNNNFQGHMPV-EIGDI--LPSLFSFNISTNALHGSIPSSFGNMK  387 (682)
Q Consensus       316 L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~-~~~~~--l~~L~~L~l~~n~i~~~~~~~~~~l~  387 (682)
                      |++|++++|.+.+..+..+     ..++.|+.+++..+.+  .+|. .++..  .++|++|++++|.+....  ....++
T Consensus       278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~  353 (562)
T 3a79_B          278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPS  353 (562)
T ss_dssp             EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred             ccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCC
Confidence            7888888887775555444     5667777777777776  4553 33221  367999999999986432  226889


Q ss_pred             CCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCc--ccccCCCCCCccEEECCCCcCcc-cCCccccCCCCCCE
Q 045291          388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH--MFSRNFNLTNLKWLLLEGNRFVG-EIPQSLSKCSSLEG  464 (682)
Q Consensus       388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~  464 (682)
                      +|++|++++|.+.+.++..+ ..+++|+.|++++|++++.  .+..+..+++|++|++++|.+.+ ..+..+..+++|++
T Consensus       354 ~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            99999999999986566554 4799999999999999974  35678899999999999999997 44456889999999


Q ss_pred             EeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCc
Q 045291          465 LYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK  544 (682)
Q Consensus       465 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~  544 (682)
                      |++++|.+++..|..+.  ++|++|++++|+++. +|..+..+++|+.|++++|++++ ..+..+..+++|+.|++++|+
T Consensus       433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCC
T ss_pred             EECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCC
Confidence            99999999876665443  799999999999995 55555599999999999999985 444459999999999999999


Q ss_pred             CCCCch
Q 045291          545 LNGKMP  550 (682)
Q Consensus       545 l~~~~~  550 (682)
                      +....+
T Consensus       509 ~~c~c~  514 (562)
T 3a79_B          509 WDCTCP  514 (562)
T ss_dssp             BCCCHH
T ss_pred             cCCCcc
Confidence            986554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.1e-39  Score=342.68  Aligned_cols=370  Identities=19%  Similarity=0.188  Sum_probs=239.2

Q ss_pred             CCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291          163 VHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF  242 (682)
Q Consensus       163 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  242 (682)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+.+.+++..|..+++|++|++++|.+++..+ ..+..+++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCEE
Confidence            4556666666655555555555566666666666655544444555556666666666665543222 234555555555


Q ss_pred             EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcC
Q 045291          243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLI  322 (682)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~  322 (682)
                      ++++|.+.+...                          .+..+..+++|+.|++++|.+.+..|..++..+++|++|+++
T Consensus       109 ~L~~n~l~~~~~--------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A          109 TLTQCNLDGAVL--------------------------SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             ECTTSCCBTHHH--------------------------HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             eCCCCCCCcccc--------------------------CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            555555442110                          011244555666666666666655555545566666666666


Q ss_pred             CCCCcccCCCCCCCC--CCccEEEccCCcCCCCCChhhh-------hcCCCceEEEecCCcCCcCCCcccCC---CCCCC
Q 045291          323 NDSIGGPFRLPIHPH--RRLRFLDVSNNNFQGHMPVEIG-------DILPSLFSFNISTNALHGSIPSSFGN---MKFLQ  390 (682)
Q Consensus       323 ~~~l~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~-------~~l~~L~~L~l~~n~i~~~~~~~~~~---l~~L~  390 (682)
                      +|.+.+..+..+..+  .+++.|++++|.+.+..+..+.       ..+++|++|++++|.+.+..+..+..   .++|+
T Consensus       163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~  242 (455)
T 3v47_A          163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ  242 (455)
T ss_dssp             TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred             CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence            666655544444333  4566666666665532221110       01344555555555544433333222   14455


Q ss_pred             EEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCC--CCCCccEEECCCCcCcccCCccccCCCCCCEEecc
Q 045291          391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF--NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN  468 (682)
Q Consensus       391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  468 (682)
                      .|++++|...+...               ..+.+.......+.  ..++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       243 ~L~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  307 (455)
T 3v47_A          243 SLILSNSYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA  307 (455)
T ss_dssp             EEECTTCTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred             eEeecccccccccc---------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence            55555544332100               01111111111222  24689999999999998888889999999999999


Q ss_pred             CCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCC
Q 045291          469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK  548 (682)
Q Consensus       469 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  548 (682)
                      +|.+.+..|..+.++++|++|++++|.+++..+..|..+++|++|++++|++++ ..|..|..+++|++|++++|++++.
T Consensus       308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc-cChhhccccccccEEECCCCccccC
Confidence            999998888889999999999999999998888999999999999999999986 6688999999999999999999987


Q ss_pred             chhhhhcCCCCCEEEccCccCcccCCc
Q 045291          549 MPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       549 ~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      .+..+..+++|+.|++++|+++|.+|.
T Consensus       387 ~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          387 PDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CHhHhccCCcccEEEccCCCcccCCCc
Confidence            777888999999999999999999985

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-37  Score=332.92  Aligned_cols=387  Identities=18%  Similarity=0.224  Sum_probs=290.7

Q ss_pred             CCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEc
Q 045291          165 LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYA  244 (682)
Q Consensus       165 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  244 (682)
                      -+.++.+++.++ .+|. +  .++|++|++++|.++ .+.+..+..+++|++|++++|.+.+.++...+..+++|++|++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            346777777777 5555 2  378999999999998 4547889999999999999999876666666888888888888


Q ss_pred             cCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCch-HHHhcCCCCcEEEcCC
Q 045291          245 DNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPT-WLLENNAKLETLFLIN  323 (682)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-~~~~~~~~L~~L~l~~  323 (682)
                      ++|.+...                            .|..+..+++|+.|++++|.+.+..+. ..+..+++|++|++++
T Consensus        87 s~n~l~~~----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~  138 (455)
T 3v47_A           87 DYNQFLQL----------------------------ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD  138 (455)
T ss_dssp             TTCTTCEE----------------------------CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS
T ss_pred             CCCccCcc----------------------------ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC
Confidence            88877532                            355667778888888888888754332 2355677777777777


Q ss_pred             CCCcccCCCC-CCCCCCccEEEccCCcCCCCCChhhhh-cCCCceEEEecCCcCCcCCCcc--------cCCCCCCCEEE
Q 045291          324 DSIGGPFRLP-IHPHRRLRFLDVSNNNFQGHMPVEIGD-ILPSLFSFNISTNALHGSIPSS--------FGNMKFLQILD  393 (682)
Q Consensus       324 ~~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~  393 (682)
                      |.+.+..+.. +..+++|++|++++|.+.+..+..+.. ..++|+.|++++|.+.+..+..        +..+++|++|+
T Consensus       139 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~  218 (455)
T 3v47_A          139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD  218 (455)
T ss_dssp             SBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEE
T ss_pred             CccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEe
Confidence            7777665544 566777777777777776555544433 1256777777777766544322        22456677777


Q ss_pred             ccCCcCCCcCchhhhhC--CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCcccc--CCCCCCEEeccC
Q 045291          394 LSNNHLTGEIPEYLAVG--CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS--KCSSLEGLYLNN  469 (682)
Q Consensus       394 l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~  469 (682)
                      +++|.+.+..+..+...  .++|+.|++++|...+....              .+.+....+..+.  ..++|++|++++
T Consensus       219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (455)
T 3v47_A          219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSK  284 (455)
T ss_dssp             CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred             cCCCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecC
Confidence            77777665555444321  25666666666655432111              1111111222222  247899999999


Q ss_pred             CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCc
Q 045291          470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM  549 (682)
Q Consensus       470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  549 (682)
                      |.+.+..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++ ..+..|..+++|++|++++|++++..
T Consensus       285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~  363 (455)
T 3v47_A          285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALG  363 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccC
Confidence            99998899999999999999999999999889999999999999999999986 67889999999999999999999888


Q ss_pred             hhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCC
Q 045291          550 PHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPL  599 (682)
Q Consensus       550 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  599 (682)
                      |..+..+++|++|++++|+++...+..+..+++++.+++.+|++.|+|+.
T Consensus       364 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99999999999999999999976666678899999999999999999973

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.3e-36  Score=316.57  Aligned_cols=417  Identities=25%  Similarity=0.257  Sum_probs=231.6

Q ss_pred             CCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCC
Q 045291           57 FTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPS  136 (682)
Q Consensus        57 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~  136 (682)
                      .++|++|++++|.+ +.+|..++++..|+++++.+|...+.+|..  ++++++|+.+++..|.              ..+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~l~l~~c~--------------~~~   72 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG--NGEQREMAVSRLRDCL--------------DRQ   72 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTT--SCCCHHHHHHHHHHHH--------------HHT
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc--cccchhcchhhhhhhh--------------ccC
Confidence            35555555555555 455555555555666665555555556654  7777777777666521              247


Q ss_pred             CcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcE
Q 045291          137 LKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEM  216 (682)
Q Consensus       137 L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~  216 (682)
                      +++|++++|.+..    +|.    -.++|++|++++|.+++ +|..   +++|++|++++|.++ .+ +..   .++|++
T Consensus        73 l~~L~l~~~~l~~----lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l-~~~---~~~L~~  135 (454)
T 1jl5_A           73 AHELELNNLGLSS----LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-AL-SDL---PPLLEY  135 (454)
T ss_dssp             CSEEECTTSCCSC----CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CC-CSC---CTTCCE
T ss_pred             CCEEEecCCcccc----CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cc-cCC---CCCCCE
Confidence            8889999888855    554    13689999999998885 5543   478899999999887 44 221   268899


Q ss_pred             EecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEc
Q 045291          217 LILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDL  296 (682)
Q Consensus       217 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l  296 (682)
                      |++++|.+++ ++  .+..+++|++|++++|.+.+                             +|..   ..+|+.|++
T Consensus       136 L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-----------------------------lp~~---~~~L~~L~L  180 (454)
T 1jl5_A          136 LGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-----------------------------LPDL---PPSLEFIAA  180 (454)
T ss_dssp             EECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-----------------------------CCCC---CTTCCEEEC
T ss_pred             EECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-----------------------------cCCC---cccccEEEC
Confidence            9999998874 44  37788888888888887653                             1211   137888888


Q ss_pred             CCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCC
Q 045291          297 SHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALH  376 (682)
Q Consensus       297 s~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~  376 (682)
                      ++|.+.+ +|+  +..+++|++|++++|.+.+....    .++|++|++++|.+. .+|. + ..+++|++|++++|.++
T Consensus       181 ~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~-~lp~-~-~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          181 GNNQLEE-LPE--LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE-ELPE-L-QNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CSSCCSS-CCC--CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCS-SCCC-C-TTCTTCCEEECCSSCCS
T ss_pred             cCCcCCc-Ccc--ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCC-cccc-c-CCCCCCCEEECCCCcCC
Confidence            8888875 553  57788888888888877764321    247788888888776 5663 3 34778888888888777


Q ss_pred             cCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccc
Q 045291          377 GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSL  456 (682)
Q Consensus       377 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  456 (682)
                      +. |.   .+++|++|++++|++. .+|.    ..++|+.|++++|++++...    ..++|++|++++|.+.+. +   
T Consensus       251 ~l-~~---~~~~L~~L~l~~N~l~-~l~~----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~---  313 (454)
T 1jl5_A          251 TL-PD---LPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C---  313 (454)
T ss_dssp             SC-CS---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C---
T ss_pred             cc-cc---cccccCEEECCCCccc-ccCc----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-c---
Confidence            43 32   2367788888888776 4553    24677788888777765321    125777777777777642 1   


Q ss_pred             cCC-CCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC-cchhhccCCCC
Q 045291          457 SKC-SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR-LIPSTFSNLKQ  534 (682)
Q Consensus       457 ~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~  534 (682)
                       .+ ++|++|++++|.+.+ +|..   +++|++|++++|.+++. |.   .+++|+.|++++|++++. .+|..+     
T Consensus       314 -~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l-----  379 (454)
T 1jl5_A          314 -DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESV-----  379 (454)
T ss_dssp             -CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTC-----
T ss_pred             -CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHH-----
Confidence             22 477777777777764 4432   46777777777777743 33   356777777777777641 122222     


Q ss_pred             CcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc--cCCcccccccccCcccccCCCCCC
Q 045291          535 IESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG--EIPEWTAQFATFNESSYEGNIFLC  595 (682)
Q Consensus       535 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~~~~~n~~~c  595 (682)
                       ..|  +.|...+.+|..   +++|+.|++++|++++  .+|.+      ++.+.+.++...|
T Consensus       380 -~~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~  430 (454)
T 1jl5_A          380 -EDL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD  430 (454)
T ss_dssp             -CEE--ECCC-----------------------------------------------------
T ss_pred             -Hhh--hhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence             222  234444445442   3788999999999987  56653      3444455554444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.5e-36  Score=315.91  Aligned_cols=426  Identities=20%  Similarity=0.200  Sum_probs=191.1

Q ss_pred             CCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCC
Q 045291           30 FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKS  109 (682)
Q Consensus        30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~  109 (682)
                      ..+|++|++++|.+..+    |.+++++++|++|++++|.+.+..|..++++..+..+.+..|..             .+
T Consensus        10 ~~~L~~L~l~~n~l~~i----P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------~~   72 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEM----PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------RQ   72 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------HT
T ss_pred             cccchhhhcccCchhhC----ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------cC
Confidence            35555555555555444    44555555555555555555555555554444433322222211             23


Q ss_pred             CceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCC
Q 045291          110 LEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSL  189 (682)
Q Consensus       110 L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  189 (682)
                      +++|++++|.  +. .+|..    .++|++|++++|.+..    +|.    .+++|++|++++|.+++ ++..   .++|
T Consensus        73 l~~L~l~~~~--l~-~lp~~----~~~L~~L~l~~n~l~~----lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L  133 (454)
T 1jl5_A           73 AHELELNNLG--LS-SLPEL----PPHLESLVASCNSLTE----LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLL  133 (454)
T ss_dssp             CSEEECTTSC--CS-CCCSC----CTTCSEEECCSSCCSS----CCC----CCTTCCEEECCSSCCSC-CCSC---CTTC
T ss_pred             CCEEEecCCc--cc-cCCCC----cCCCCEEEccCCcCCc----ccc----ccCCCcEEECCCCccCc-ccCC---CCCC
Confidence            4444444422  11 11110    2345555555554433    332    12445555555554442 1111   1345


Q ss_pred             CEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccce
Q 045291          190 RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRL  269 (682)
Q Consensus       190 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l  269 (682)
                      ++|++++|.++ .+ + .+..+++|++|++++|.+++ ++.    ...+|+.|++++|.+.+                  
T Consensus       134 ~~L~L~~n~l~-~l-p-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~------------------  187 (454)
T 1jl5_A          134 EYLGVSNNQLE-KL-P-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE------------------  187 (454)
T ss_dssp             CEEECCSSCCS-SC-C-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS------------------
T ss_pred             CEEECcCCCCC-CC-c-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc------------------
Confidence            55555555554 23 2 24555555555555555442 111    12345555555554431                  


Q ss_pred             eccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCc
Q 045291          270 LLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN  349 (682)
Q Consensus       270 ~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  349 (682)
                                 +| .+..+++|+.|++++|.+.+ +|..    .++|++|++++|.+..+.  .+..+++|++|++++|.
T Consensus       188 -----------l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          188 -----------LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             -----------CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC
T ss_pred             -----------Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCc
Confidence                       12 23455556666666665553 3321    246666666666666432  36667777777777777


Q ss_pred             CCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc
Q 045291          350 FQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF  429 (682)
Q Consensus       350 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  429 (682)
                      +. .+|.    .+++|+.|++++|.+.+ +|..   +++|++|++++|++. .++.    ..++|+.|++++|++++...
T Consensus       249 l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~-~l~~----~~~~L~~L~l~~N~l~~i~~  314 (454)
T 1jl5_A          249 LK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEIRSLCD  314 (454)
T ss_dssp             CS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-EESC----CCTTCCEEECCSSCCSEECC
T ss_pred             CC-cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC-cccC----cCCcCCEEECcCCcCCcccC
Confidence            76 3443    24677888888877775 3322   367888888888776 3332    13578888888888775321


Q ss_pred             ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcC--CcchhccCC
Q 045291          430 SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG--PIPVEFCQL  507 (682)
Q Consensus       430 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l  507 (682)
                          ..++|++|++++|.+.+ +|..   +++|++|++++|.++ .+|.   .+++|++|++++|++++  ..|..+   
T Consensus       315 ----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l---  379 (454)
T 1jl5_A          315 ----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV---  379 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC---
T ss_pred             ----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH---
Confidence                12578888888888875 4433   578889999999888 4554   47889999999999887  445433   


Q ss_pred             CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC--CchhhhhcCCCCCEEEccCccCcccCCcccccc
Q 045291          508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG--KMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF  580 (682)
Q Consensus       508 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  580 (682)
                         ..|  +.|.+.+ .+|.   .+++|+.|++++|++++  .+|.      +++.|++.+|.+.+..+.+...+
T Consensus       380 ---~~L--~~n~~~~-~i~~---~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          380 ---EDL--RMNSHLA-EVPE---LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             ---CEE--ECCC---------------------------------------------------------------
T ss_pred             ---Hhh--hhccccc-cccc---ccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHHh
Confidence               333  3455554 3444   35789999999999986  4443      46777889999888777655544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.9e-35  Score=314.04  Aligned_cols=310  Identities=19%  Similarity=0.127  Sum_probs=256.2

Q ss_pred             ccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCC
Q 045291          284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILP  363 (682)
Q Consensus       284 ~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  363 (682)
                      .+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+..+....|..+++|++|++++|.+.+..+..+. .++
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~  128 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-DLY  128 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT-TCT
T ss_pred             HccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcc-ccc
Confidence            3445566666666666666544544 56777777777777777776666777888899999999988755555554 488


Q ss_pred             CceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEEC
Q 045291          364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLL  443 (682)
Q Consensus       364 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  443 (682)
                      +|+.|++++|.+.+..+..|.++++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence            9999999999998888888999999999999999998 677777778999999999999999888888999999999999


Q ss_pred             CCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC
Q 045291          444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  523 (682)
Q Consensus       444 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  523 (682)
                      ++|...+..+.......+|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++ 
T Consensus       208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-  286 (477)
T 2id5_A          208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-  286 (477)
T ss_dssp             ECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-
T ss_pred             CCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce-
Confidence            9998877777666667799999999999997776789999999999999999998888889999999999999999986 


Q ss_pred             cchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          524 LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       524 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      ..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++.|.++. ...+.......+.++...|..|
T Consensus       287 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEES
T ss_pred             ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch-HhHHhhhhccccCccCceeCCc
Confidence            6788999999999999999999988888889999999999999999987763 1112233345566777777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.6e-34  Score=305.72  Aligned_cols=345  Identities=26%  Similarity=0.335  Sum_probs=238.5

Q ss_pred             CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291          134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS  213 (682)
Q Consensus       134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~  213 (682)
                      +++++.|++.++.+..    ++  .+..+++|++|++++|.+++..+  +..+++|++|++++|.++ .+++  +..+++
T Consensus        45 l~~l~~L~l~~~~i~~----l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~  113 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS----ID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTN  113 (466)
T ss_dssp             HHTCCEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred             hccccEEecCCCCCcc----Cc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCC
Confidence            4566666666666644    44  25566677777777776664433  666667777777777666 3312  666666


Q ss_pred             CcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCE
Q 045291          214 IEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF  293 (682)
Q Consensus       214 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~  293 (682)
                      |++|++++|.+++..   .+..+++|++|++++|.+...                             + .+..+++|+.
T Consensus       114 L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~-----------------------------~-~~~~l~~L~~  160 (466)
T 1o6v_A          114 LTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI-----------------------------S-ALSGLTSLQQ  160 (466)
T ss_dssp             CCEEECCSSCCCCCG---GGTTCTTCSEEEEEEEEECCC-----------------------------G-GGTTCTTCSE
T ss_pred             CCEEECCCCCCCCCh---HHcCCCCCCEEECCCCccCCC-----------------------------h-hhccCCcccE
Confidence            666666666665321   144555555555555443310                             0 1233444444


Q ss_pred             EEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCC
Q 045291          294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN  373 (682)
Q Consensus       294 L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  373 (682)
                      |+++ +.+                         ...  ..+..+++|++|++++|.+.+ ++. + ..+++|+.|++++|
T Consensus       161 L~l~-~~~-------------------------~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l-~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          161 LSFG-NQV-------------------------TDL--KPLANLTTLERLDISSNKVSD-ISV-L-AKLTNLESLIATNN  209 (466)
T ss_dssp             EEEE-ESC-------------------------CCC--GGGTTCTTCCEEECCSSCCCC-CGG-G-GGCTTCSEEECCSS
T ss_pred             eecC-Ccc-------------------------cCc--hhhccCCCCCEEECcCCcCCC-Chh-h-ccCCCCCEEEecCC
Confidence            4443 122                         221  124455666666666666652 222 2 33777888888887


Q ss_pred             cCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC
Q 045291          374 ALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP  453 (682)
Q Consensus       374 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  453 (682)
                      .+.+..+  +..+++|++|++++|.+. .++.  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+
T Consensus       210 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~  282 (466)
T 1o6v_A          210 QISDITP--LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP  282 (466)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred             ccccccc--ccccCCCCEEECCCCCcc-cchh--hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence            7775544  566778888888888776 4432  3468888888888888876654  6778889999999998886544


Q ss_pred             ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCC
Q 045291          454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK  533 (682)
Q Consensus       454 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~  533 (682)
                        +..+++|++|++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++  . ..+..++
T Consensus       283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~l~~l~  353 (466)
T 1o6v_A          283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--V-SSLANLT  353 (466)
T ss_dssp             --GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC--C-GGGTTCT
T ss_pred             --ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC--c-hhhccCC
Confidence              7888999999999999986544  7889999999999999997766  7789999999999999986  3 4688999


Q ss_pred             CCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291          534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG  571 (682)
Q Consensus       534 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  571 (682)
                      +|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999999999998777  7889999999999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2e-33  Score=299.94  Aligned_cols=345  Identities=26%  Similarity=0.341  Sum_probs=212.0

Q ss_pred             CCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcC
Q 045291          106 SFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLAN  185 (682)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  185 (682)
                      .++++++|+++++..  . .++. +.. +++|++|++++|.+..    +++  +.++++|++|++++|.+.+..+  +..
T Consensus        44 ~l~~l~~L~l~~~~i--~-~l~~-~~~-l~~L~~L~Ls~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~  110 (466)
T 1o6v_A           44 DLDQVTTLQADRLGI--K-SIDG-VEY-LNNLTQINFSNNQLTD----ITP--LKNLTKLVDILMNNNQIADITP--LAN  110 (466)
T ss_dssp             HHHTCCEEECCSSCC--C-CCTT-GGG-CTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             HhccccEEecCCCCC--c-cCcc-hhh-hcCCCEEECCCCccCC----chh--hhccccCCEEECCCCccccChh--hcC
Confidence            356788888887433  2 2332 444 8889999999888865    554  8888899999999988885544  888


Q ss_pred             CCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCccc
Q 045291          186 MTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ  265 (682)
Q Consensus       186 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  265 (682)
                      +++|++|++++|.++ .+  ..+..+++|++|++++|.+++.   ..+..+++|+.+++++ .+..              
T Consensus       111 l~~L~~L~L~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~-~~~~--------------  169 (466)
T 1o6v_A          111 LTNLTGLTLFNNQIT-DI--DPLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGN-QVTD--------------  169 (466)
T ss_dssp             CTTCCEEECCSSCCC-CC--GGGTTCTTCSEEEEEEEEECCC---GGGTTCTTCSEEEEEE-SCCC--------------
T ss_pred             CCCCCEEECCCCCCC-CC--hHHcCCCCCCEEECCCCccCCC---hhhccCCcccEeecCC-cccC--------------
Confidence            899999999999887 44  2378888999999999887742   2477888888888853 2211              


Q ss_pred             ccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEc
Q 045291          266 LNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDV  345 (682)
Q Consensus       266 l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  345 (682)
                                     . ..+..+++|+.|++++|.+.+. +.  +..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus       170 ---------------~-~~~~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  228 (466)
T 1o6v_A          170 ---------------L-KPLANLTTLERLDISSNKVSDI-SV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSL  228 (466)
T ss_dssp             ---------------C-GGGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred             ---------------c-hhhccCCCCCEEECcCCcCCCC-hh--hccCCCCCEEEecCCccccccc--ccccCCCCEEEC
Confidence                           1 1256778888888888887643 22  5566777777777776665433  444566666666


Q ss_pred             cCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCC
Q 045291          346 SNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ  425 (682)
Q Consensus       346 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~  425 (682)
                      ++|.+.+ ++ .+ ..+++|+.|++++|.+.+..+  +..+++|++|++++|.+. .++.  +..+++|+.|++++|++.
T Consensus       229 ~~n~l~~-~~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~  300 (466)
T 1o6v_A          229 NGNQLKD-IG-TL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLE  300 (466)
T ss_dssp             CSSCCCC-CG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCS
T ss_pred             CCCCccc-ch-hh-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCccc
Confidence            6666652 22 22 235666666666666654433  555566666666666555 3332  234555555555555555


Q ss_pred             CcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhcc
Q 045291          426 GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC  505 (682)
Q Consensus       426 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  505 (682)
                      +..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|++++..|  +.
T Consensus       301 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  372 (466)
T 1o6v_A          301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA  372 (466)
T ss_dssp             CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred             Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh
Confidence            4332  3445555555555555544333  44455555555555555433  234445555555555555554443  44


Q ss_pred             CCCCCCEEEccCCcCC
Q 045291          506 QLDLLQILDISDNNIS  521 (682)
Q Consensus       506 ~l~~L~~L~Ls~n~~~  521 (682)
                      .+++|+.|++++|+++
T Consensus       373 ~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          373 NLTRITQLGLNDQAWT  388 (466)
T ss_dssp             TCTTCCEEECCCEEEE
T ss_pred             cCCCCCEEeccCCccc
Confidence            4555555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=311.03  Aligned_cols=307  Identities=19%  Similarity=0.161  Sum_probs=279.3

Q ss_pred             CCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE
Q 045291          289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF  368 (682)
Q Consensus       289 ~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  368 (682)
                      ++++.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .+|...+..+++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            57999999999998665555 789999999999999999998899999999999999999998 6666655569999999


Q ss_pred             EecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291          369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF  448 (682)
Q Consensus       369 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  448 (682)
                      ++++|.+.+..+..|..+++|++|++++|.+. .++...+.++++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            99999999888999999999999999999998 55555566899999999999999988888889999999999999999


Q ss_pred             cccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh
Q 045291          449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST  528 (682)
Q Consensus       449 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~  528 (682)
                      .+..+..|..+++|++|++++|+..+.++.......+|++|++++|.+++..+..|..+++|+.|+|++|++++ ..+..
T Consensus       189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~  267 (477)
T 2id5_A          189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSM  267 (477)
T ss_dssp             CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-ECTTS
T ss_pred             cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-cChhh
Confidence            98888899999999999999999887777777777799999999999998777889999999999999999986 66788


Q ss_pred             ccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCC
Q 045291          529 FSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPL  599 (682)
Q Consensus       529 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  599 (682)
                      |..+++|++|++++|++.+..|..+..+++|+.|++++|.++...+..+..+.+++.+++.+||+.|+|+.
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            99999999999999999998899999999999999999999977776678889999999999999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-33  Score=294.31  Aligned_cols=266  Identities=20%  Similarity=0.243  Sum_probs=178.7

Q ss_pred             ccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCc
Q 045291          286 YHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL  365 (682)
Q Consensus       286 ~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L  365 (682)
                      ..+++|+.|++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ++.   ..+++|
T Consensus       114 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~---~~l~~L  188 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSL  188 (390)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCG---GGCTTC
T ss_pred             cCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-ccc---cccccc
Confidence            34445555555555554 3444334566667777777666666555556666666666666666552 221   124455


Q ss_pred             eEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCC
Q 045291          366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG  445 (682)
Q Consensus       366 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  445 (682)
                      +.|++++|.+.+                         ++     ..++|++|++++|.+......   ..++|+.|++++
T Consensus       189 ~~L~l~~n~l~~-------------------------~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~  235 (390)
T 3o6n_A          189 FHANVSYNLLST-------------------------LA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQH  235 (390)
T ss_dssp             SEEECCSSCCSE-------------------------EE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCS
T ss_pred             ceeecccccccc-------------------------cC-----CCCcceEEECCCCeeeecccc---ccccccEEECCC
Confidence            555555554432                         11     123455555555555433221   235677777777


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcc
Q 045291          446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI  525 (682)
Q Consensus       446 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~  525 (682)
                      |.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+..+..+++|+.|++++|++++  +
T Consensus       236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~--~  310 (390)
T 3o6n_A          236 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--V  310 (390)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC--C
T ss_pred             CCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee--c
Confidence            777643  466777888888888888887777888888888888888888875 34556778999999999999985  6


Q ss_pred             hhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCC
Q 045291          526 PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPL  599 (682)
Q Consensus       526 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  599 (682)
                      |..+..+++|+.|++++|+++...   +..+++|+.|++++|++.|.+..  ..+..+....+.+++..|.++.
T Consensus       311 ~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~~  379 (390)
T 3o6n_A          311 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKIDY  379 (390)
T ss_dssp             GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTTC
T ss_pred             CccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceecccc
Confidence            667788899999999999998653   66788999999999999986543  4456667777888888887643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.6e-33  Score=293.15  Aligned_cols=355  Identities=18%  Similarity=0.201  Sum_probs=222.7

Q ss_pred             CCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhh
Q 045291          104 FPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL  183 (682)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  183 (682)
                      ++++++|++|++++|.  +.+ +| .+.. +++|++|++++|.+..    ++   ++.+++|++|++++|.+++. +  +
T Consensus        38 ~~~l~~L~~L~Ls~n~--l~~-~~-~l~~-l~~L~~L~Ls~n~l~~----~~---~~~l~~L~~L~Ls~N~l~~~-~--~  102 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSS--ITD-MT-GIEK-LTGLTKLICTSNNITT----LD---LSQNTNLTYLACDSNKLTNL-D--V  102 (457)
T ss_dssp             HHHHTTCCEEECCSSC--CCC-CT-TGGG-CTTCSEEECCSSCCSC----CC---CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred             hhHcCCCCEEEccCCC--ccc-Ch-hhcc-cCCCCEEEccCCcCCe----Ec---cccCCCCCEEECcCCCCcee-e--c
Confidence            5567777777777743  332 33 3444 7777777777777644    32   66677777777777777653 2  6


Q ss_pred             cCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCc
Q 045291          184 ANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN  263 (682)
Q Consensus       184 ~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  263 (682)
                      +.+++|++|++++|.+++ + +  +..+++|++|++++|.+++ ++   +..+++|+.+++++|...+.           
T Consensus       103 ~~l~~L~~L~L~~N~l~~-l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~-----------  163 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTK-L-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITK-----------  163 (457)
T ss_dssp             TTCTTCCEEECCSSCCSC-C-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCC-----------
T ss_pred             CCCCcCCEEECCCCcCCe-e-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcccc-----------
Confidence            677777777777777763 4 2  6677777777777777764 22   55666777777766643211           


Q ss_pred             ccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEE
Q 045291          264 FQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL  343 (682)
Q Consensus       264 ~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  343 (682)
                                       +  .+..+++|+.|++++|.+++ +|   +..+++|+.|++++|.+.+.   .+..+++|+.|
T Consensus       164 -----------------~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L  217 (457)
T 3bz5_A          164 -----------------L--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFL  217 (457)
T ss_dssp             -----------------C--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEE
T ss_pred             -----------------c--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEE
Confidence                             1  13455667777777776664 33   44566666666666666654   35556666666


Q ss_pred             EccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCc
Q 045291          344 DVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN  423 (682)
Q Consensus       344 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  423 (682)
                      ++++|.+++ +|  + ..+++|+.|++++|.+++..   +..+++|+.|++++|               +|+.|++++|.
T Consensus       218 ~Ls~N~l~~-ip--~-~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~  275 (457)
T 3bz5_A          218 DCSSNKLTE-ID--V-TPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNT  275 (457)
T ss_dssp             ECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCT
T ss_pred             ECcCCcccc-cC--c-cccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCc
Confidence            666666653 44  2 23566666666666666542   234555666655443               34445556665


Q ss_pred             CCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchh
Q 045291          424 LQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE  503 (682)
Q Consensus       424 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  503 (682)
                      +.+..+  +..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|++|++++|++++.   .
T Consensus       276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~  334 (457)
T 3bz5_A          276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---D  334 (457)
T ss_dssp             TCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---C
T ss_pred             cCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---c
Confidence            554444  34566777777777765555443   2344555544443             5778888888888764   2


Q ss_pred             ccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          504 FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       504 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      +..+++|+.|++++|++++         ++.|+.|++++|.+.+.     ..+..|+.+++++|.++|.+|.
T Consensus       335 l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          335 VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence            6777888888888888764         24566677777777754     2445677788999999888886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-32  Score=303.27  Aligned_cols=265  Identities=20%  Similarity=0.241  Sum_probs=178.5

Q ss_pred             ccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCc
Q 045291          286 YHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL  365 (682)
Q Consensus       286 ~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L  365 (682)
                      ..+++|+.|++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ++.   ..+++|
T Consensus       120 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~---~~l~~L  194 (597)
T 3oja_B          120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSL  194 (597)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCG---GGCTTC
T ss_pred             cCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cCh---hhhhhh
Confidence            34445555555555554 3333334556666666666666666555556666666666666665553 221   114455


Q ss_pred             eEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCC
Q 045291          366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG  445 (682)
Q Consensus       366 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  445 (682)
                      +.|++++|.+.+.     ..                         .++|+.|++++|.+.......   .++|+.|++++
T Consensus       195 ~~L~l~~n~l~~l-----~~-------------------------~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~  241 (597)
T 3oja_B          195 FHANVSYNLLSTL-----AI-------------------------PIAVEELDASHNSINVVRGPV---NVELTILKLQH  241 (597)
T ss_dssp             SEEECCSSCCSEE-----EC-------------------------CTTCSEEECCSSCCCEEECSC---CSCCCEEECCS
T ss_pred             hhhhcccCccccc-----cC-------------------------CchhheeeccCCccccccccc---CCCCCEEECCC
Confidence            5555555444321     12                         334555555555554332221   25677777777


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcc
Q 045291          446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI  525 (682)
Q Consensus       446 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~  525 (682)
                      |.+.+  +..+..+++|++|++++|.+.+..|..|..+++|++|+|++|.+++ +|..+..+++|+.|+|++|++++  +
T Consensus       242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~--i  316 (597)
T 3oja_B          242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--V  316 (597)
T ss_dssp             SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC--C
T ss_pred             CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc--c
Confidence            77764  3567778888888888888887778888888888888888888885 45566778999999999999985  6


Q ss_pred             hhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          526 PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       526 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      |..+..+++|+.|++++|++.+..   +..+++|+.|++++|++.|.+..  ..+..+....+.+++..|+.+
T Consensus       317 ~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          317 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence            777888999999999999998653   56788999999999999987543  445666667778888888763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.8e-32  Score=284.94  Aligned_cols=351  Identities=19%  Similarity=0.203  Sum_probs=251.5

Q ss_pred             HHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchh
Q 045291          129 IIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPL  208 (682)
Q Consensus       129 ~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~  208 (682)
                      .+.. +++|++|++++|.+..    +|  +++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++ + +  +
T Consensus        37 ~~~~-l~~L~~L~Ls~n~l~~----~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~-~--~  102 (457)
T 3bz5_A           37 SEEQ-LATLTSLDCHNSSITD----MT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-L-D--V  102 (457)
T ss_dssp             EHHH-HTTCCEEECCSSCCCC----CT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-C-C--C
T ss_pred             ChhH-cCCCCEEEccCCCccc----Ch--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-e-e--c
Confidence            3444 7888888888888865    54  578888888888888888854 3  7788888888888888873 4 2  7


Q ss_pred             cccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccC
Q 045291          209 VHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQ  288 (682)
Q Consensus       209 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~  288 (682)
                      ..+++|++|++++|.+++ ++   +..+++|+.|++++|.+.+.                             +  +..+
T Consensus       103 ~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-----------------------------~--l~~l  147 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-----------------------------D--VSHN  147 (457)
T ss_dssp             TTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-----------------------------C--CTTC
T ss_pred             CCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-----------------------------c--cccC
Confidence            788888888888888874 32   66778888888888876531                             1  4456


Q ss_pred             CCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE
Q 045291          289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF  368 (682)
Q Consensus       289 ~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  368 (682)
                      ++|+.|++++|...+.++   +..+++|++|++++|.+++..   +..+++|+.|++++|.+++. +  + ..+++|+.|
T Consensus       148 ~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-~--l-~~l~~L~~L  217 (457)
T 3bz5_A          148 TQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-D--L-NQNIQLTFL  217 (457)
T ss_dssp             TTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-C--C-TTCTTCSEE
T ss_pred             CcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee-c--c-ccCCCCCEE
Confidence            678888888875544443   456777777777777777642   56667777777777777642 2  2 236777777


Q ss_pred             EecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291          369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF  448 (682)
Q Consensus       369 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  448 (682)
                      ++++|.+++ +|  +..+++|++|++++|++.+ ++   ...+++|+.|+++.|              +|+.|++++|..
T Consensus       218 ~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~  276 (457)
T 3bz5_A          218 DCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQ  276 (457)
T ss_dssp             ECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTT
T ss_pred             ECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC---HHHCCCCCEEeccCC--------------CCCEEECCCCcc
Confidence            777777775 33  6667777777777777763 33   124666777766554              456677777776


Q ss_pred             cccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh
Q 045291          449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST  528 (682)
Q Consensus       449 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~  528 (682)
                      .+.+|  +..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|+.|++++|++++ . +  
T Consensus       277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~-l-~--  334 (457)
T 3bz5_A          277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTE-L-D--  334 (457)
T ss_dssp             CCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC-C-C--
T ss_pred             CCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCcccc-c-c--
Confidence            65555  46678888888888887766663   3456666665554             689999999999987 3 2  


Q ss_pred             ccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCC
Q 045291          529 FSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFL  594 (682)
Q Consensus       529 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~  594 (682)
                      ++.+++|+.|++++|++++        ++.|..|++++|.+.+.     ..+..+..+++..|.+.
T Consensus       335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~  387 (457)
T 3bz5_A          335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT  387 (457)
T ss_dssp             CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred             cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence            8899999999999999985        35677778999999875     34456666777777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7e-33  Score=278.80  Aligned_cols=259  Identities=33%  Similarity=0.553  Sum_probs=236.8

Q ss_pred             CCccEEEccCCcCCC--CCChhhhhcCCCceEEEecC-CcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCC
Q 045291          338 RRLRFLDVSNNNFQG--HMPVEIGDILPSLFSFNIST-NALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNL  414 (682)
Q Consensus       338 ~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  414 (682)
                      .+++.|++++|.+.+  .+|..+.. +++|++|++++ |.+.+..|..|..+++|++|++++|.+.+.+|..+. .+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCC
Confidence            478899999999987  78887766 89999999995 889888999999999999999999999877777654 79999


Q ss_pred             CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCC-CCCEEeccCCcCCCCchhhhcCCCCCCeecCCC
Q 045291          415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN  493 (682)
Q Consensus       415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  493 (682)
                      ++|++++|++.+..+..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..|..+..++ |++|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            9999999999988888899999999999999999988999999998 999999999999989999999987 99999999


Q ss_pred             CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccC
Q 045291          494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI  573 (682)
Q Consensus       494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  573 (682)
                      |.+++..+..|..+++|+.|++++|++++ ..+ .+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAF-DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECC-BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceee-ecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            99999999999999999999999999986 344 4889999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCcccccCCCCCCCCCCCCC
Q 045291          574 PEWTAQFATFNESSYEGNIFLCGLPLPIC  602 (682)
Q Consensus       574 ~~~~~~~~~l~~~~~~~n~~~c~~~~~~~  602 (682)
                      |.. ..+++++.+++.+|++.|+.|...|
T Consensus       285 p~~-~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          285 PQG-GNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CCS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             CCC-ccccccChHHhcCCCCccCCCCCCC
Confidence            994 8899999999999999999877654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.9e-32  Score=284.28  Aligned_cols=310  Identities=19%  Similarity=0.245  Sum_probs=183.2

Q ss_pred             CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291          134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS  213 (682)
Q Consensus       134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~  213 (682)
                      ++++++|+++++.+..    +|...+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+++..+..+++
T Consensus        44 l~~l~~l~l~~~~l~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~  118 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRK----LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPL  118 (390)
T ss_dssp             GCCCSEEEEESCEESE----ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             cCCceEEEecCCchhh----CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCC
Confidence            4566666666665544    55544556666666666666666555556666666666666666665 333455566666


Q ss_pred             CcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCE
Q 045291          214 IEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF  293 (682)
Q Consensus       214 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~  293 (682)
                      |++|++++|.++ .++..                                                    .+..+++|+.
T Consensus       119 L~~L~L~~n~l~-~l~~~----------------------------------------------------~~~~l~~L~~  145 (390)
T 3o6n_A          119 LTVLVLERNDLS-SLPRG----------------------------------------------------IFHNTPKLTT  145 (390)
T ss_dssp             CCEEECCSSCCC-CCCTT----------------------------------------------------TTTTCTTCCE
T ss_pred             CCEEECCCCccC-cCCHH----------------------------------------------------HhcCCCCCcE
Confidence            666666666554 12211                                                    1234455666


Q ss_pred             EEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCC
Q 045291          294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN  373 (682)
Q Consensus       294 L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  373 (682)
                      |++++|.+.+..+.. +..+++|++|++++|.+...   .+..+++|+.|++++|.+.+ ++     ..++|++|++++|
T Consensus       146 L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-~~-----~~~~L~~L~l~~n  215 (390)
T 3o6n_A          146 LSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHN  215 (390)
T ss_dssp             EECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-EE-----CCSSCSEEECCSS
T ss_pred             EECCCCccCccChhh-ccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-cC-----CCCcceEEECCCC
Confidence            666666665444443 67889999999999999875   35567899999999998863 21     2467888888888


Q ss_pred             cCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC
Q 045291          374 ALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP  453 (682)
Q Consensus       374 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  453 (682)
                      .+......   ..++|++|++++|.+. ..+  .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+   
T Consensus       216 ~l~~~~~~---~~~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---  286 (390)
T 3o6n_A          216 SINVVRGP---VNVELTILKLQHNNLT-DTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA---  286 (390)
T ss_dssp             CCCEEECC---CCSSCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE---
T ss_pred             eeeecccc---ccccccEEECCCCCCc-ccH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc---
Confidence            87754221   2356777777777765 222  22345555555555555555545555555555555555555442   


Q ss_pred             ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCC
Q 045291          454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK  533 (682)
Q Consensus       454 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~  533 (682)
                                            ++..+..+++|++|++++|++++ .|..+..+++|+.|++++|+++.  .+  +..++
T Consensus       287 ----------------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~--~~--~~~~~  339 (390)
T 3o6n_A          287 ----------------------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT--LK--LSTHH  339 (390)
T ss_dssp             ----------------------EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC--CC--CCTTC
T ss_pred             ----------------------cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccce--eC--chhhc
Confidence                                  23333344555555555555542 23334445556666666666553  21  44556


Q ss_pred             CCcEEECCCCcCCC
Q 045291          534 QIESLDLSYNKLNG  547 (682)
Q Consensus       534 ~L~~L~l~~n~l~~  547 (682)
                      +|+.|++++|++..
T Consensus       340 ~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          340 TLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCSEEECCSSCEEH
T ss_pred             cCCEEEcCCCCccc
Confidence            66666666666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.8e-31  Score=270.71  Aligned_cols=307  Identities=21%  Similarity=0.280  Sum_probs=186.4

Q ss_pred             hcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCC
Q 045291          183 LANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP  262 (682)
Q Consensus       183 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  262 (682)
                      +..+++|++|++++|.+. .+  ..+..+++|++|++++|.++...   .+..+++|+.|++++|.+             
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~--~~~~~~~~L~~L~l~~n~i~~~~---~~~~l~~L~~L~L~~n~i-------------  100 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SI--QGIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKI-------------  100 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CC--TTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCC-------------
T ss_pred             chhcccccEEEEeCCccc-cc--hhhhhcCCccEEEccCCccccch---hhhcCCcCCEEEccCCcc-------------
Confidence            345667777777777766 34  23666677777777777665221   144555555555555543             


Q ss_pred             cccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccE
Q 045291          263 NFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRF  342 (682)
Q Consensus       263 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  342 (682)
                                                             .+ ++.  +..+++|++|++++|.+.+...  +..+++|++
T Consensus       101 ---------------------------------------~~-~~~--~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~  136 (347)
T 4fmz_A          101 ---------------------------------------TD-ISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYS  136 (347)
T ss_dssp             ---------------------------------------CC-CGG--GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCE
T ss_pred             ---------------------------------------cC-chH--HcCCCcCCEEECcCCcccCchh--hccCCceeE
Confidence                                                   32 121  3344444444444444444322  445556666


Q ss_pred             EEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCC
Q 045291          343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN  422 (682)
Q Consensus       343 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  422 (682)
                      |++++|......+. + ..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++.  +..+++|+.|++++|
T Consensus       137 L~l~~n~~~~~~~~-~-~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n  209 (347)
T 4fmz_A          137 LNLGANHNLSDLSP-L-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVN  209 (347)
T ss_dssp             EECTTCTTCCCCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSS
T ss_pred             EECCCCCCcccccc-h-hhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccC
Confidence            66666644323332 2 236666666666666654332  556667777777777665 4443  335667777777777


Q ss_pred             cCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcch
Q 045291          423 NLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPV  502 (682)
Q Consensus       423 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  502 (682)
                      .+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.  .
T Consensus       210 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~  281 (347)
T 4fmz_A          210 QITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S  281 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G
T ss_pred             CCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h
Confidence            6665443  5566777777777777664433  66677777777777777643  3466777777777777777754  3


Q ss_pred             hccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCc
Q 045291          503 EFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS  570 (682)
Q Consensus       503 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  570 (682)
                      .+..+++|+.|++++|++++ ..+..+..+++|+.|++++|++++..|  +..+++|+.|++++|+++
T Consensus       282 ~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          282 VLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGGCTTCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhcCCCCCCEEECcCCcCCC-cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            46677777777777777765 566677777777777777777776555  667777777777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.6e-31  Score=270.20  Aligned_cols=304  Identities=24%  Similarity=0.361  Sum_probs=169.1

Q ss_pred             CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291          134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS  213 (682)
Q Consensus       134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~  213 (682)
                      +++|++|+++++.+..    ++  .+..+++|++|++++|.+++..+  +..+++|++|++++|.++ .+  ..+..+++
T Consensus        43 l~~L~~L~l~~~~i~~----~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~--~~~~~l~~  111 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS----IQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DI--SALQNLTN  111 (347)
T ss_dssp             HTTCSEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CC--GGGTTCTT
T ss_pred             cccccEEEEeCCcccc----ch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cc--hHHcCCCc
Confidence            5667777777766644    43  36666677777777776664322  666667777777776665 33  24566666


Q ss_pred             CcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCE
Q 045291          214 IEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF  293 (682)
Q Consensus       214 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~  293 (682)
                      |++|++++|.+++..   .+..++                                                    +|+.
T Consensus       112 L~~L~l~~n~i~~~~---~~~~l~----------------------------------------------------~L~~  136 (347)
T 4fmz_A          112 LRELYLNEDNISDIS---PLANLT----------------------------------------------------KMYS  136 (347)
T ss_dssp             CSEEECTTSCCCCCG---GGTTCT----------------------------------------------------TCCE
T ss_pred             CCEEECcCCcccCch---hhccCC----------------------------------------------------ceeE
Confidence            666666666654211   133333                                                    4444


Q ss_pred             EEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCC
Q 045291          294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN  373 (682)
Q Consensus       294 L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  373 (682)
                      |++++|.....++.  +..+++|++|++++|.+.....  +..                         +++|++|++++|
T Consensus       137 L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~-------------------------l~~L~~L~l~~n  187 (347)
T 4fmz_A          137 LNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IAN-------------------------LTDLYSLSLNYN  187 (347)
T ss_dssp             EECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGG-------------------------CTTCSEEECTTS
T ss_pred             EECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hcc-------------------------CCCCCEEEccCC
Confidence            44444433222221  2333333333333333322111  222                         444444444444


Q ss_pred             cCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC
Q 045291          374 ALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP  453 (682)
Q Consensus       374 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  453 (682)
                      .+.+..+  +..+++|++|++++|.+. .++.  +..+++|++|++++|++++..+  +..+++|++|++++|.+.+.  
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  258 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--  258 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred             ccccccc--ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence            4443222  444555555555555554 2222  2345555555555555554333  45566666666666666543  


Q ss_pred             ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCC
Q 045291          454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK  533 (682)
Q Consensus       454 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~  533 (682)
                      ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ ..|  +..++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~--~~~l~  333 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP--LASLS  333 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG--GGGCT
T ss_pred             hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC--hhhhh
Confidence            3466667777777777776643  346677777777777777777777777777777777777777765 333  66777


Q ss_pred             CCcEEECCCCcCC
Q 045291          534 QIESLDLSYNKLN  546 (682)
Q Consensus       534 ~L~~L~l~~n~l~  546 (682)
                      +|++|++++|+++
T Consensus       334 ~L~~L~l~~N~i~  346 (347)
T 4fmz_A          334 KMDSADFANQVIK  346 (347)
T ss_dssp             TCSEESSSCC---
T ss_pred             ccceeehhhhccc
Confidence            7777777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=6.6e-31  Score=289.02  Aligned_cols=295  Identities=20%  Similarity=0.182  Sum_probs=258.4

Q ss_pred             CcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhc
Q 045291          282 PKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI  361 (682)
Q Consensus       282 ~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  361 (682)
                      +..+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .+|..++..
T Consensus        68 ~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~  145 (597)
T 3oja_B           68 AALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN  145 (597)
T ss_dssp             THHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             HHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhcc
Confidence            445678999999999999998665554 789999999999999999998888999999999999999998 677766666


Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  441 (682)
                      +++|++|++++|.+.+..|..|..+++|++|++++|.+. .++.   ..+++|+.|++++|.+.+..     ..++|+.|
T Consensus       146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~---~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L  216 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLSTLA-----IPIAVEEL  216 (597)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCG---GGCTTCSEEECCSSCCSEEE-----CCTTCSEE
T ss_pred             CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcCh---hhhhhhhhhhcccCcccccc-----CCchhhee
Confidence            999999999999999988889999999999999999998 4442   35889999999999887542     45689999


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291          442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  521 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  521 (682)
                      ++++|.+....+..   .++|+.|++++|.+.+.  ..+..+++|++|+|++|.+++..|..|..+++|+.|+|++|.++
T Consensus       217 ~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          217 DASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  291 (597)
T ss_dssp             ECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred             eccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence            99999987543322   36899999999999863  67899999999999999999999999999999999999999998


Q ss_pred             CCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      +  +|..+..+++|+.|+|++|++. .+|..+..+++|+.|++++|+++.. |  +..++.++.+++.+|++.|+|.
T Consensus       292 ~--l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          292 A--LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             E--EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             C--CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence            5  6777788999999999999999 5677788999999999999999854 3  5678899999999999999763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=4.4e-31  Score=265.67  Aligned_cols=255  Identities=26%  Similarity=0.392  Sum_probs=216.3

Q ss_pred             CCCcEEEcCCCCCcc--cCCCCCCCCCCccEEEccC-CcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCC
Q 045291          314 AKLETLFLINDSIGG--PFRLPIHPHRRLRFLDVSN-NNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ  390 (682)
Q Consensus       314 ~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  390 (682)
                      .+++.|+++++.+.+  ..+..+..+++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++..|..|..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            356666666666665  4555666778888888884 7787778877765 88999999999998888888888899999


Q ss_pred             EEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCC-CccEEECCCCcCcccCCccccCCCCCCEEeccC
Q 045291          391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLT-NLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN  469 (682)
Q Consensus       391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  469 (682)
                      +|++++|.+.+.+|..+. .+++|++|++++|++++..|..+..++ +|++|++++|.+.+..|..+..++ |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            999999998877776654 688999999999999888888888887 899999999999888888888887 99999999


Q ss_pred             CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCc
Q 045291          470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM  549 (682)
Q Consensus       470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  549 (682)
                      |.+.+..|..+..+++|++|++++|.+++..+. +..+++|++|++++|++++ ..|..+..+++|+.|++++|++++.+
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCCcccccC
Confidence            999988899999999999999999999876665 7889999999999999986 68889999999999999999999888


Q ss_pred             hhhhhcCCCCCEEEccCccCcccCC
Q 045291          550 PHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       550 ~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      |.. ..+++|+.+++++|+..|..|
T Consensus       285 p~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          285 PQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CCC-ccccccChHHhcCCCCccCCC
Confidence            876 788999999999999766544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.1e-29  Score=253.41  Aligned_cols=268  Identities=22%  Similarity=0.248  Sum_probs=141.4

Q ss_pred             CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291          290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN  369 (682)
Q Consensus       290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  369 (682)
                      +++.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+   .++|++|+
T Consensus        53 ~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L~  127 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELR  127 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEE
T ss_pred             CCeEEECCCCcCCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEEE
Confidence            4555555555555332222 455555555555555555555555555666666666666555 444433   24566666


Q ss_pred             ecCCcCCcCCCcccCCCCCCCEEEccCCcCCC-cCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291          370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTG-EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF  448 (682)
Q Consensus       370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  448 (682)
                      +++|.+.+..+..|.++++|++|++++|.+.. .+....+.++++|+.|++++|+++..... +  .++|++|++++|.+
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~--~~~L~~L~l~~n~l  204 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-L--PPSLTELHLDGNKI  204 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-C--CTTCSEEECTTSCC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-c--cccCCEEECCCCcC
Confidence            66666655555555566666666666665531 12222333455666666666555543221 1  14556666666655


Q ss_pred             cccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh
Q 045291          449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST  528 (682)
Q Consensus       449 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~  528 (682)
                      .+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ ..+..
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~  282 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSND  282 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc-cChhh
Confidence            5555555555566666666666555544445555556666666666555 344445555556666666665554 33333


Q ss_pred             ccC------CCCCcEEECCCCcCCC--CchhhhhcCCCCCEEEccCc
Q 045291          529 FSN------LKQIESLDLSYNKLNG--KMPHQLVELKTLEVFSVAYN  567 (682)
Q Consensus       529 ~~~------l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n  567 (682)
                      |..      .+.++.|++++|++..  ..|..+..+++++.+++++|
T Consensus       283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            322      2455555666555542  33445555555555555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=8.2e-33  Score=295.78  Aligned_cols=390  Identities=21%  Similarity=0.133  Sum_probs=206.1

Q ss_pred             CCCCcEEEccCCCCCCCCCCcccc-cccCCCCCCEEEccCCCCcc----cCchhhcCCCCCCEEeccCCccccccCCchh
Q 045291          134 MPSLKYLSLSGSILGTNSSRILDQ-GLCSLVHLQELRMADNDLRG----SLPWCLANMTSLRILDVSFNQLTGSISSSPL  208 (682)
Q Consensus       134 l~~L~~L~L~~~~l~~~~~~i~~~-~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~  208 (682)
                      .++|++|+++++.+..    .+.. .+..+++|++|++++|.+..    .++..+..+++|++|++++|.+.+......+
T Consensus         2 ~~~l~~L~Ls~~~l~~----~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~   77 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSD----ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   77 (461)
T ss_dssp             CEEEEEEEEESCCCCH----HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CccceehhhhhcccCc----hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence            3567788888877743    2221 25667788888888887764    3456677778888888888877643211222


Q ss_pred             cccC----CCcEEecCCCcCcccc---CccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCC
Q 045291          209 VHLT----SIEMLILSDNHFQIPI---SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIF  281 (682)
Q Consensus       209 ~~l~----~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~  281 (682)
                      ..++    +|++|++++|.++...   ....+..+++|++|++++|.+.......                        +
T Consensus        78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~------------------------l  133 (461)
T 1z7x_W           78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL------------------------L  133 (461)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH------------------------H
T ss_pred             HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH------------------------H
Confidence            3344    5777777777765211   0122344555555555555443211000                        0


Q ss_pred             Ccc-cccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhh
Q 045291          282 PKF-LYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD  360 (682)
Q Consensus       282 ~~~-l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  360 (682)
                      ... ....++|+.|++++|.+++..+..+                     +..+..+++|++|++++|.+.+..+..+..
T Consensus       134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l---------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  192 (461)
T 1z7x_W          134 CEGLLDPQCRLEKLQLEYCSLSAASCEPL---------------------ASVLRAKPDFKELTVSNNDINEAGVRVLCQ  192 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHH---------------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             HHHHhcCCCcceEEECCCCCCCHHHHHHH---------------------HHHHhhCCCCCEEECcCCCcchHHHHHHHH
Confidence            000 0112344555555544443221110                     111223345555555555544322222211


Q ss_pred             ----cCCCceEEEecCCcCCcC----CCcccCCCCCCCEEEccCCcCCCcCc----hhhhhCCCCCCEEEccCCcCCCc-
Q 045291          361 ----ILPSLFSFNISTNALHGS----IPSSFGNMKFLQILDLSNNHLTGEIP----EYLAVGCVNLNSLALSNNNLQGH-  427 (682)
Q Consensus       361 ----~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~-  427 (682)
                          ..++|++|++++|.++..    ++..+..+++|++|++++|.+.+...    ..++..+++|++|++++|+++.. 
T Consensus       193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~  272 (461)
T 1z7x_W          193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG  272 (461)
T ss_dssp             HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence                234666666666665542    24445556666666666666542211    22222356666666666666543 


Q ss_pred             ---ccccCCCCCCccEEECCCCcCcccCCcccc-----CCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCc
Q 045291          428 ---MFSRNFNLTNLKWLLLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNH  495 (682)
Q Consensus       428 ---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~  495 (682)
                         .+..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.
T Consensus       273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence               233444466666666666666533222221     225677777777776644    34555666777777777777


Q ss_pred             CcCCcchhccC-----CCCCCEEEccCCcCCCC---cchhhccCCCCCcEEECCCCcCCCCchhhhh-----cCCCCCEE
Q 045291          496 LEGPIPVEFCQ-----LDLLQILDISDNNISGR---LIPSTFSNLKQIESLDLSYNKLNGKMPHQLV-----ELKTLEVF  562 (682)
Q Consensus       496 l~~~~~~~~~~-----l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L  562 (682)
                      +++..+..+..     .++|+.|++++|++++.   .++..+..+++|++|++++|++++.....+.     ...+|+.|
T Consensus       353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L  432 (461)
T 1z7x_W          353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL  432 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhe
Confidence            66544433322     55777777777776520   2455666677777777777776643222221     13456777


Q ss_pred             EccCccCccc
Q 045291          563 SVAYNNLSGE  572 (682)
Q Consensus       563 ~l~~n~l~~~  572 (682)
                      ++.++.+...
T Consensus       433 ~~~~~~~~~~  442 (461)
T 1z7x_W          433 VLYDIYWSEE  442 (461)
T ss_dssp             ECTTCCCCHH
T ss_pred             eecccccCHH
Confidence            7766666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.2e-29  Score=256.23  Aligned_cols=288  Identities=19%  Similarity=0.213  Sum_probs=222.4

Q ss_pred             CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291          290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN  369 (682)
Q Consensus       290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  369 (682)
                      .++.++++++.+. .+|..+   .++++.|++++|.+....+..+..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEE
Confidence            6888888888887 566542   367888999988888877778888888999999988888555655544 88899999


Q ss_pred             ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCC--cccccCCCCCCccEEECCCCc
Q 045291          370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG--HMFSRNFNLTNLKWLLLEGNR  447 (682)
Q Consensus       370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~  447 (682)
                      +++|.++...+ .+.  ++|++|++++|.+. .++...+..+++|+.|++++|.++.  ..+..+..+ +|++|++++|.
T Consensus       109 L~~n~l~~l~~-~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          109 ISKNHLVEIPP-NLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             CCSSCCCSCCS-SCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             CCCCcCCccCc-ccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            99888874433 332  78889999998887 6776666678889999999888863  556666666 88889999888


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291          448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS  527 (682)
Q Consensus       448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~  527 (682)
                      +.+ +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++  .+|.
T Consensus       184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~  258 (332)
T 2ft3_A          184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVPA  258 (332)
T ss_dssp             CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--BCCT
T ss_pred             CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--ecCh
Confidence            875 444332  68888899999888777788888889999999999888888778888889999999999887  3677


Q ss_pred             hccCCCCCcEEECCCCcCCCCchhhhhc------CCCCCEEEccCccCc--ccCCcccccccccCcccccCCC
Q 045291          528 TFSNLKQIESLDLSYNKLNGKMPHQLVE------LKTLEVFSVAYNNLS--GEIPEWTAQFATFNESSYEGNI  592 (682)
Q Consensus       528 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~~~~~~n~  592 (682)
                      .+..+++|+.|++++|++++..+..+..      .++|+.+++++|++.  +..|..+..+..++.+++++|.
T Consensus       259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            7888888999999999888766666654      367888899999887  4455556667777777777663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=8.1e-29  Score=251.94  Aligned_cols=288  Identities=19%  Similarity=0.182  Sum_probs=233.0

Q ss_pred             CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291          290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN  369 (682)
Q Consensus       290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  369 (682)
                      +++.++++++.+. .+|..   -.+.++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCS---CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCcc---CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence            6888999998887 56653   2368999999999999888878889999999999999998665666654 89999999


Q ss_pred             ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCC--cccccCCCCCCccEEECCCCc
Q 045291          370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG--HMFSRNFNLTNLKWLLLEGNR  447 (682)
Q Consensus       370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~  447 (682)
                      +++|.++.. |..+.  ++|++|++++|.+. .++...+.++++|+.|++++|.+..  ..+..+..+++|++|++++|.
T Consensus       107 Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLKEL-PEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCSBC-CSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCCcc-Chhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            999998844 43332  78999999999998 6777667789999999999998864  566778889999999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291          448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS  527 (682)
Q Consensus       448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~  527 (682)
                      +.. +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++.  +|.
T Consensus       183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~  257 (330)
T 1xku_A          183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPG  257 (330)
T ss_dssp             CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCT
T ss_pred             ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--CCh
Confidence            875 444432  789999999999988778889999999999999999998888888999999999999999984  777


Q ss_pred             hccCCCCCcEEECCCCcCCCCchhhhhc------CCCCCEEEccCccCcc--cCCcccccccccCcccccCC
Q 045291          528 TFSNLKQIESLDLSYNKLNGKMPHQLVE------LKTLEVFSVAYNNLSG--EIPEWTAQFATFNESSYEGN  591 (682)
Q Consensus       528 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~~~~~n  591 (682)
                      .+..+++|++|++++|++++..+..+..      .++++.+++++|++..  ..|..+..+..++.+++++|
T Consensus       258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            8889999999999999999777666643      3778899999999874  33444555666777777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.8e-29  Score=254.53  Aligned_cols=269  Identities=21%  Similarity=0.244  Sum_probs=227.1

Q ss_pred             CCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE
Q 045291          289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF  368 (682)
Q Consensus       289 ~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  368 (682)
                      ++++.|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..++   ++|++|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVEL  128 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEE
T ss_pred             CCCeEEECCCCcCCccCHhH-hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEE
Confidence            57899999999998555544 788999999999999999888888999999999999999997 6776553   799999


Q ss_pred             EecCCcCCcCCCcccCCCCCCCEEEccCCcCCC-cCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc
Q 045291          369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTG-EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR  447 (682)
Q Consensus       369 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  447 (682)
                      ++++|.+.+..+..|.++++|++|++++|.+.. .+....+..+ +|+.|++++|++++... .+  .++|++|++++|.
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~  204 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLNELHLDHNK  204 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCSCCBCCSSC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCCEEECCCCc
Confidence            999999998877889999999999999999852 1333444455 99999999999987443 33  3789999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291          448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS  527 (682)
Q Consensus       448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~  527 (682)
                      +.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ ..+.
T Consensus       205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~-~~~~  282 (332)
T 2ft3_A          205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVN  282 (332)
T ss_dssp             CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB-CCTT
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc-cChh
Confidence            99888889999999999999999999888888999999999999999999 667778999999999999999986 5566


Q ss_pred             hccC------CCCCcEEECCCCcCC--CCchhhhhcCCCCCEEEccCcc
Q 045291          528 TFSN------LKQIESLDLSYNKLN--GKMPHQLVELKTLEVFSVAYNN  568 (682)
Q Consensus       528 ~~~~------l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~  568 (682)
                      .|..      .+.|+.|++++|++.  ...|..+..+++|+.+++++|.
T Consensus       283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             HccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            6654      367999999999988  6778889999999999999885

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=7e-29  Score=262.72  Aligned_cols=252  Identities=22%  Similarity=0.202  Sum_probs=206.1

Q ss_pred             CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEc
Q 045291          315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL  394 (682)
Q Consensus       315 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  394 (682)
                      ....++..+..+..+...   -.++++.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus        44 ~~~~v~c~~~~l~~iP~~---~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDG---ISTNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCSSCCSC---CCTTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcCcCCCC---CCCCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            456777777777765432   23678889999998875444444 44889999999999988887788889999999999


Q ss_pred             cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc-CcccCCccccCCCCCCEEeccCCcCC
Q 045291          395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR-FVGEIPQSLSKCSSLEGLYLNNNSLS  473 (682)
Q Consensus       395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~  473 (682)
                      ++|++. .++...+..+++|++|++++|++....+..|..+++|++|++++|. +....+..|.++++|++|++++|.++
T Consensus       120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            999887 7777667788899999999999888777788889999999998854 44445557888899999999999887


Q ss_pred             CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh
Q 045291          474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL  553 (682)
Q Consensus       474 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  553 (682)
                       .+| .+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++ ..+..|.++++|+.|+|++|++++..+..+
T Consensus       199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence             444 37788899999999999988888889999999999999999886 667888889999999999999998777888


Q ss_pred             hcCCCCCEEEccCccCcccCC
Q 045291          554 VELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       554 ~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      ..+++|+.|++++|++.|.|.
T Consensus       276 ~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             SSCTTCCEEECCSSCEECSST
T ss_pred             ccccCCCEEEcCCCCccCCCC
Confidence            888999999999999988776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=8.9e-29  Score=262.88  Aligned_cols=252  Identities=20%  Similarity=0.177  Sum_probs=207.2

Q ss_pred             CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEc
Q 045291          315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL  394 (682)
Q Consensus       315 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  394 (682)
                      ....++.++..+..+.. .  -.++++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|.++++|++|++
T Consensus        55 ~~~~v~c~~~~l~~iP~-~--~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQ-G--IPSNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCSSCCS-C--CCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcCccCC-C--CCCCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            45677777777766433 2  236889999999998855555554 4889999999999998888888899999999999


Q ss_pred             cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCC-cCcccCCccccCCCCCCEEeccCCcCC
Q 045291          395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGN-RFVGEIPQSLSKCSSLEGLYLNNNSLS  473 (682)
Q Consensus       395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~  473 (682)
                      ++|.+. .++...+..+++|++|++++|++....+..|..+++|++|++++| .+....+..|.++++|++|++++|.+.
T Consensus       131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            999987 777777778899999999999998877778888999999999884 444444557888899999999999988


Q ss_pred             CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh
Q 045291          474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL  553 (682)
Q Consensus       474 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  553 (682)
                      +. | .+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++ ..+..|.++++|+.|+|++|++++..+..+
T Consensus       210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            44 4 47788899999999999988888889999999999999999886 667888889999999999999987777788


Q ss_pred             hcCCCCCEEEccCccCcccCC
Q 045291          554 VELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       554 ~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      ..+++|+.|++++|++.|.|.
T Consensus       287 ~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          287 TPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TTCTTCCEEECCSSCEECSTT
T ss_pred             ccccCCCEEEccCCCcCCCCC
Confidence            888999999999999988776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.7e-31  Score=285.54  Aligned_cols=355  Identities=17%  Similarity=0.170  Sum_probs=261.8

Q ss_pred             CCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCcccc--C-ccccccCCCCcEEEccCCcccccccccCCCCCCc
Q 045291          187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPI--S-LEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN  263 (682)
Q Consensus       187 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  263 (682)
                      ++|++|++++|.+++......+..+++|++|++++|.++...  . ...+..+++|++|++++|.+.....         
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~---------   73 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV---------   73 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH---------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH---------
Confidence            578999999999874332233778999999999999987321  1 1235677999999999998764211         


Q ss_pred             ccccceeccccCCCCCCCCcccccCC----CCCEEEcCCCCCcCc----CchHHHhcCCCCcEEEcCCCCCcccCCCC--
Q 045291          264 FQLNRLLLSSSYGDGFIFPKFLYHQH----DLEFVDLSHIKMNGE----FPTWLLENNAKLETLFLINDSIGGPFRLP--  333 (682)
Q Consensus       264 ~~l~~l~l~~~~~~~~~~~~~l~~~~----~L~~L~ls~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--  333 (682)
                                        ......++    +|+.|++++|.+.+.    ++.. +..+++|++|++++|.+.+.....  
T Consensus        74 ------------------~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~  134 (461)
T 1z7x_W           74 ------------------HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQLLC  134 (461)
T ss_dssp             ------------------HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             ------------------HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCcCchHHHHHHH
Confidence                              01111222    699999999998753    3444 678899999999999986532221  


Q ss_pred             ---CCCCCCccEEEccCCcCCCCC----ChhhhhcCCCceEEEecCCcCCcCCCcccC-----CCCCCCEEEccCCcCCC
Q 045291          334 ---IHPHRRLRFLDVSNNNFQGHM----PVEIGDILPSLFSFNISTNALHGSIPSSFG-----NMKFLQILDLSNNHLTG  401 (682)
Q Consensus       334 ---~~~~~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~~~~  401 (682)
                         ....++|++|++++|.+++..    +..+. .+++|++|++++|.+....+..+.     ..++|++|++++|.+.+
T Consensus       135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence               233568999999999987543    22233 378999999999998754333332     36689999999999874


Q ss_pred             c----CchhhhhCCCCCCEEEccCCcCCCcc-----cccCCCCCCccEEECCCCcCccc----CCccccCCCCCCEEecc
Q 045291          402 E----IPEYLAVGCVNLNSLALSNNNLQGHM-----FSRNFNLTNLKWLLLEGNRFVGE----IPQSLSKCSSLEGLYLN  468 (682)
Q Consensus       402 ~----~~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~  468 (682)
                      .    ++..+ ..+++|++|++++|++.+..     +..+..+++|++|++++|.++..    ++..+..+++|++|+++
T Consensus       214 ~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  292 (461)
T 1z7x_W          214 DNCRDLCGIV-ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA  292 (461)
T ss_dssp             THHHHHHHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             HHHHHHHHHH-HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence            3    23333 36899999999999887542     22333578999999999998754    56677778999999999


Q ss_pred             CCcCCCCchhhhcC-----CCCCCeecCCCCcCcCC----cchhccCCCCCCEEEccCCcCCCCcchhhcc----C-CCC
Q 045291          469 NNSLSGKIPRWLGN-----LTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGRLIPSTFS----N-LKQ  534 (682)
Q Consensus       469 ~n~~~~~~~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~----~-l~~  534 (682)
                      +|.+.+..+..+..     .++|++|++++|.+++.    .+..+..+++|+.|++++|++++ ..+..+.    . .++
T Consensus       293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSV  371 (461)
T ss_dssp             TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCC
T ss_pred             CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCc
Confidence            99987554444432     36999999999999865    45567778999999999999875 3333332    2 679


Q ss_pred             CcEEECCCCcCCC----CchhhhhcCCCCCEEEccCccCccc
Q 045291          535 IESLDLSYNKLNG----KMPHQLVELKTLEVFSVAYNNLSGE  572 (682)
Q Consensus       535 L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~  572 (682)
                      |++|++++|+++.    .++..+..+++|+.|++++|+++..
T Consensus       372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            9999999999986    6788888899999999999998754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.1e-28  Score=248.30  Aligned_cols=251  Identities=23%  Similarity=0.264  Sum_probs=197.8

Q ss_pred             cEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcC--CCcccCCCCCCCEEEc
Q 045291          317 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS--IPSSFGNMKFLQILDL  394 (682)
Q Consensus       317 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l  394 (682)
                      +.++.+++.++.+...   -.+++++|++++|.++ .+|...+..+++|++|++++|.+...  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~~ip~~---~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCCSC---CCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCCCC---CCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            4677777777665432   2367888888888887 66666555688888888888888743  2455667888888888


Q ss_pred             cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCC
Q 045291          395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS  473 (682)
Q Consensus       395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  473 (682)
                      ++|.+. .++..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        86 s~n~i~-~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEE-EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCccc-cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            888886 566553 368888888888888876654 56778888888888888888777788888888888888888887


Q ss_pred             C-CchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhh
Q 045291          474 G-KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQ  552 (682)
Q Consensus       474 ~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  552 (682)
                      + ..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++ ..+..+..+++|+.|++++|++.+..|..
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence            5 467778888888888888888887778888888888888888888875 55567888888888888888888888877


Q ss_pred             hhcCC-CCCEEEccCccCcccCC
Q 045291          553 LVELK-TLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       553 l~~l~-~L~~L~l~~n~l~~~~~  574 (682)
                      +..++ +|+.|++++|+++|.++
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECSGG
T ss_pred             HHhhhccCCEEEccCCCeecccC
Confidence            87774 88888888888887655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.1e-28  Score=248.14  Aligned_cols=248  Identities=21%  Similarity=0.200  Sum_probs=144.1

Q ss_pred             CEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCC--CChhhhhcCCCceEEE
Q 045291          292 EFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGH--MPVEIGDILPSLFSFN  369 (682)
Q Consensus       292 ~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~  369 (682)
                      +.++.+++.++ .+|..   -.+++++|++++|.+..+....|..+++|++|++++|.+...  .+..+.. +++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEE
Confidence            45555555554 34432   124566666666666655554555666666666666665421  1333333 56666666


Q ss_pred             ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCch-hhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291          370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPE-YLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF  448 (682)
Q Consensus       370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  448 (682)
                      +++|.+.. .+..+..+++|++|++++|.+. .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            66666553 3344556666666666666665 3332 3344566666666666666655555565666666666666666


Q ss_pred             cc-cCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291          449 VG-EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS  527 (682)
Q Consensus       449 ~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~  527 (682)
                      .+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ ..+.
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~  241 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQ  241 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB-CSSS
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc-cCHH
Confidence            54 355556666666666666666665555566666666666666666665555556666666666666666654 4455


Q ss_pred             hccCCC-CCcEEECCCCcCCC
Q 045291          528 TFSNLK-QIESLDLSYNKLNG  547 (682)
Q Consensus       528 ~~~~l~-~L~~L~l~~n~l~~  547 (682)
                      .+..++ +|+.|++++|++..
T Consensus       242 ~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          242 ELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             SCCCCCTTCCEEECTTCCEEC
T ss_pred             HHHhhhccCCEEEccCCCeec
Confidence            555553 66666666666653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=3.9e-28  Score=241.35  Aligned_cols=248  Identities=21%  Similarity=0.226  Sum_probs=202.3

Q ss_pred             cEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEcc
Q 045291          341 RFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS  420 (682)
Q Consensus       341 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  420 (682)
                      ++++.+++.++ .+|..+   .+++++|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence            56777777776 566543   468888888888888777778888888999999888887 4544445578889999999


Q ss_pred             CCc-CCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCC
Q 045291          421 NNN-LQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGP  499 (682)
Q Consensus       421 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  499 (682)
                      +|+ +....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            887 7777778888899999999999999887788888999999999999999877777788999999999999999977


Q ss_pred             cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccccc
Q 045291          500 IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ  579 (682)
Q Consensus       500 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  579 (682)
                      .+..|..+++|+.|++++|++++ ..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.++. ...
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~  246 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPL  246 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHH
T ss_pred             CHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHH
Confidence            77789999999999999999986 6688899999999999999999988888899999999999999999987774 122


Q ss_pred             ccccCcccccCCCCCC
Q 045291          580 FATFNESSYEGNIFLC  595 (682)
Q Consensus       580 ~~~l~~~~~~~n~~~c  595 (682)
                      +..++......+...|
T Consensus       247 ~~~l~~~~~~~~~~~c  262 (285)
T 1ozn_A          247 WAWLQKFRGSSSEVPC  262 (285)
T ss_dssp             HHHHHHCCSEECCCBE
T ss_pred             HHHHHhcccccCcccc
Confidence            2334444444454444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.1e-28  Score=251.25  Aligned_cols=282  Identities=17%  Similarity=0.148  Sum_probs=229.8

Q ss_pred             CCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceE
Q 045291          288 QHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS  367 (682)
Q Consensus       288 ~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  367 (682)
                      ++.....+.+++.++ .+|..+   .++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+.. +++|++
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCE
Confidence            444556788888887 566542   358999999999999887778889999999999999998555554544 899999


Q ss_pred             EEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCch-hhhhCCCCCCEEEccCC-cCCCcccccCCCCCCccEEECCC
Q 045291          368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPE-YLAVGCVNLNSLALSNN-NLQGHMFSRNFNLTNLKWLLLEG  445 (682)
Q Consensus       368 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~  445 (682)
                      |++++|.+++..+..|.++++|++|++++|++. .++. ..+..+++|++|++++| .+....+..+..+++|++|++++
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            999999998776667889999999999999997 6766 55667999999999998 46766677888999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhc---cCCCCCCEEEccCCcCCC
Q 045291          446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF---CQLDLLQILDISDNNISG  522 (682)
Q Consensus       446 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~~~~  522 (682)
                      |.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+   ...+.++.++++++.+++
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence            99998888999999999999999999875444455678999999999999987655443   346778899999998864


Q ss_pred             C---cchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          523 R---LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       523 ~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      .   .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.+|.
T Consensus       264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            2   2467788999999999999999955545568899999999999999998874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2e-29  Score=278.46  Aligned_cols=439  Identities=14%  Similarity=0.048  Sum_probs=225.9

Q ss_pred             cccccCCCCCCCEEecCCCCCCCccccCcccc------------CCCCCCCEEeCCCCCCCcchhHHHhhccCcceeecc
Q 045291           23 LLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL------------HNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSI   90 (682)
Q Consensus        23 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------------~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~   90 (682)
                      .+..+..+++|++|+++++.........+...            .++++|++|+|++|.+++..+..+...         
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~---------  135 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKA---------  135 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH---------
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHh---------
Confidence            44556778889999988763211000001111            156666777776666655444444332         


Q ss_pred             CccccCcccCCCCCCCCC-CCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEE
Q 045291           91 SYCEVNGVLRGQGFPSFK-SLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELR  169 (682)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~  169 (682)
                                      ++ +|++|++++|.. ........+...+++|++|+|++|.+.....+........+++|++|+
T Consensus       136 ----------------~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~  198 (592)
T 3ogk_B          136 ----------------RADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN  198 (592)
T ss_dssp             ----------------HGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE
T ss_pred             ----------------ccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE
Confidence                            11 255555554321 111111222222666666666666552211110111234556666666


Q ss_pred             ccCCCCc----ccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCcc--ccCccccccCCCCcEEE
Q 045291          170 MADNDLR----GSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQI--PISLEPLFNHSRLKIFY  243 (682)
Q Consensus       170 L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~  243 (682)
                      +++|.++    ..++..+..+++|++|++++|.+. .+ +..+..+++|++|+++......  ......+..+++|+.+.
T Consensus       199 L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~  276 (592)
T 3ogk_B          199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-EL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG  276 (592)
T ss_dssp             CTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GG-HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred             eeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HH-HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence            6666654    233344455666666666666665 34 4556666666666665422110  00011123334444443


Q ss_pred             ccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCC
Q 045291          244 ADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN  323 (682)
Q Consensus       244 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~  323 (682)
                      +..+..                             ..+|..+..+++|+.|++++|.+++.....++             
T Consensus       277 l~~~~~-----------------------------~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~-------------  314 (592)
T 3ogk_B          277 LSYMGP-----------------------------NEMPILFPFAAQIRKLDLLYALLETEDHCTLI-------------  314 (592)
T ss_dssp             ETTCCT-----------------------------TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH-------------
T ss_pred             ccccch-----------------------------hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH-------------
Confidence            333211                             11223333444455555555443322222222             


Q ss_pred             CCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecC-----------CcCCcC-CCcccCCCCCCCE
Q 045291          324 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIST-----------NALHGS-IPSSFGNMKFLQI  391 (682)
Q Consensus       324 ~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-----------n~i~~~-~~~~~~~l~~L~~  391 (682)
                                 ..+++|++|+++ +.+.+.....+...+++|++|++++           +.++.. .+..+..+++|++
T Consensus       315 -----------~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  382 (592)
T 3ogk_B          315 -----------QKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY  382 (592)
T ss_dssp             -----------TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred             -----------HhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence                       334555555555 2232222223333466677777662           334322 1222344667777


Q ss_pred             EEccCCcCCCcCchhhhhCCCCCCEEEcc----CCcCCCc-----ccccCCCCCCccEEECCCCc--CcccCCccc-cCC
Q 045291          392 LDLSNNHLTGEIPEYLAVGCVNLNSLALS----NNNLQGH-----MFSRNFNLTNLKWLLLEGNR--FVGEIPQSL-SKC  459 (682)
Q Consensus       392 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~-~~l  459 (682)
                      |+++.|.+++.....+...+++|+.|+++    .|.+++.     .+..+.++++|+.|++++|.  +.+.....+ ..+
T Consensus       383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~  462 (592)
T 3ogk_B          383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS  462 (592)
T ss_dssp             EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred             EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence            77766666655445554456777777775    4455542     22224457778888876543  443322222 347


Q ss_pred             CCCCEEeccCCcCCC-CchhhhcCCCCCCeecCCCCcCcCC-cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcE
Q 045291          460 SSLEGLYLNNNSLSG-KIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIES  537 (682)
Q Consensus       460 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~  537 (682)
                      ++|++|++++|++++ .++..+..+++|++|+|++|.+++. .+.....+++|+.|++++|+++..........++.+..
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~  542 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI  542 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence            788888888888765 3445557788888888888887643 23344567888888998888875323333456677766


Q ss_pred             EECCCC
Q 045291          538 LDLSYN  543 (682)
Q Consensus       538 L~l~~n  543 (682)
                      ..+..+
T Consensus       543 ~~~~~~  548 (592)
T 3ogk_B          543 ELIPSR  548 (592)
T ss_dssp             EEECCC
T ss_pred             EEecCc
Confidence            666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3.5e-27  Score=249.67  Aligned_cols=251  Identities=24%  Similarity=0.266  Sum_probs=153.9

Q ss_pred             ccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEc
Q 045291          340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL  419 (682)
Q Consensus       340 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  419 (682)
                      .+.++.++..++ .+|..+   .++++.|++++|.+.+..+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence            345666666655 555543   245666666666666655566666666666666666665 444444556666666666


Q ss_pred             cCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCc-CCCCchhhhcCCCCCCeecCCCCcCcC
Q 045291          420 SNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNS-LSGKIPRWLGNLTRLQYIIMPNNHLEG  498 (682)
Q Consensus       420 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~  498 (682)
                      ++|+++...+..+..+++|++|++++|.+....+..|.++++|++|++++|+ +....+..|.++++|++|++++|.++.
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            6666666555556666666666666666665555566666666666666633 332333355666666666666666663


Q ss_pred             CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccc
Q 045291          499 PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTA  578 (682)
Q Consensus       499 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  578 (682)
                      . | .+..+++|+.|+|++|++++ ..+..|.++++|++|++++|++++..+..|..+++|+.|++++|+++...+..+.
T Consensus       200 ~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          200 I-P-NLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             C-C-CCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             c-c-ccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence            3 2 35566666666666666664 4456666666666666666666666666666666666666666666655555455


Q ss_pred             cccccCcccccCCCCCCCCC
Q 045291          579 QFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       579 ~~~~l~~~~~~~n~~~c~~~  598 (682)
                      .+..++.+++.+|||.|+|.
T Consensus       277 ~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          277 PLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             SCTTCCEEECCSSCEECSST
T ss_pred             cccCCCEEEcCCCCccCCCC
Confidence            56666666666666666664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.5e-28  Score=248.19  Aligned_cols=280  Identities=17%  Similarity=0.147  Sum_probs=236.7

Q ss_pred             cCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCE
Q 045291          312 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQI  391 (682)
Q Consensus       312 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  391 (682)
                      .|+.....+.+++.++.+....   .++|++|++++|.+++ ++...+..+++|++|++++|.+++..+..|.++++|++
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            4555566888888888764422   3589999999999984 55433445999999999999999888889999999999


Q ss_pred             EEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCC-cCcccCCccccCCCCCCEEeccC
Q 045291          392 LDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGN-RFVGEIPQSLSKCSSLEGLYLNN  469 (682)
Q Consensus       392 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~  469 (682)
                      |++++|++. .++...+..+++|++|++++|++++... ..+..+++|++|++++| .+....+..+.++++|++|++++
T Consensus       105 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            999999998 7888777789999999999999997665 57889999999999999 46666678899999999999999


Q ss_pred             CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh---ccCCCCCcEEECCCCcCC
Q 045291          470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST---FSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~~l~~L~~L~l~~n~l~  546 (682)
                      |.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|++++ ..+..   ....+.++.++++++.+.
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~~~~l~~l~L~~~~l~  262 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-FHFSELSTGETNSLIKKFTFRNVKIT  262 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-CCCC------CCCCCCEEEEESCBCC
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-ccccccccccccchhhcccccccccc
Confidence            99998889999999999999999999986655556678999999999999986 33332   234677899999999887


Q ss_pred             C----CchhhhhcCCCCCEEEccCccCcccCCcc-cccccccCcccccCCCCCCCCC
Q 045291          547 G----KMPHQLVELKTLEVFSVAYNNLSGEIPEW-TAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       547 ~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      +    .+|..+..+++|+.|++++|+++ .+|.. +..+++++.+++.+|++.|+|+
T Consensus       263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          263 DESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            5    36778899999999999999999 56654 4788999999999999999986

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.1e-27  Score=250.10  Aligned_cols=228  Identities=24%  Similarity=0.209  Sum_probs=114.3

Q ss_pred             CCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEE
Q 045291          314 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD  393 (682)
Q Consensus       314 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  393 (682)
                      ++++.|++++|.+.++.+..|..+++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..|..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc-CcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            3455555555555555444555555555555555555432222222 255555555555555544444455555555555


Q ss_pred             ccCCcCCCcCchhhhhCCCCCCEEEccCC-cCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcC
Q 045291          394 LSNNHLTGEIPEYLAVGCVNLNSLALSNN-NLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL  472 (682)
Q Consensus       394 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  472 (682)
                      +++|++. .++...+..+++|+.|++++| .+....+..+.++++|++|++++|.+.+. | .+..+++|++|++++|.+
T Consensus       154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred             CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence            5555554 444444444555555555552 23333333444555555555555555432 2 244455555555555555


Q ss_pred             CCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291          473 SGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       473 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      .+..|..|.++++|++|++++|.+++..+..|..+++|+.|+|++|++++ ..+..|..+++|+.|++++|++.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEccCCCcC
Confidence            54445555555555555555555555555555555555555555555543 34444455555555555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3.2e-29  Score=276.86  Aligned_cols=383  Identities=13%  Similarity=0.069  Sum_probs=267.2

Q ss_pred             CCCCCCEEEccCCCCcccCchhhcC-CC-CCCEEeccCCc-cccccCCchhcccCCCcEEecCCCcCccccCc---cccc
Q 045291          161 SLVHLQELRMADNDLRGSLPWCLAN-MT-SLRILDVSFNQ-LTGSISSSPLVHLTSIEMLILSDNHFQIPISL---EPLF  234 (682)
Q Consensus       161 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~  234 (682)
                      .+++|++|+|++|.+++..+..+.. ++ +|++|++++|. ++....+.....+++|++|++++|.+++....   ....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            6778888888888777655555554 33 38888888775 22111022234678888888888876532110   1234


Q ss_pred             cCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCC
Q 045291          235 NHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNA  314 (682)
Q Consensus       235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~  314 (682)
                      .+++|+.|+++.|.+.+...                        ..++..+..+++|+.|++++|.+.+ ++.. +..++
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~------------------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~  243 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISP------------------------KDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAA  243 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCH------------------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCT
T ss_pred             cCCCccEEEeeccCCCccCH------------------------HHHHHHHhhCCCCcEEeccCccHHH-HHHH-Hhhhh
Confidence            67788888888777642100                        0123445678899999999988874 5544 78889


Q ss_pred             CCcEEEcCCCCCc---ccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCC-cccCCCCCCC
Q 045291          315 KLETLFLINDSIG---GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIP-SSFGNMKFLQ  390 (682)
Q Consensus       315 ~L~~L~l~~~~l~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~  390 (682)
                      +|++|+++.....   ......+..+++|+.|+++++... .+|..+ ..+++|++|++++|.++.... ..+..+++|+
T Consensus       244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             HHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            9999999854322   222345667889999999986443 455444 448899999999999764333 4468899999


Q ss_pred             EEEccCCcCCCcCchhhhhCCCCCCEEEccC-----------CcCCCcccc-cCCCCCCccEEECCCCcCcccCCccccC
Q 045291          391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSN-----------NNLQGHMFS-RNFNLTNLKWLLLEGNRFVGEIPQSLSK  458 (682)
Q Consensus       391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~  458 (682)
                      +|+++ +.+.......+...+++|++|++++           +.+++.... ....+++|++|+++.+.+++..+..+..
T Consensus       322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            99999 4443333444555789999999993           456543222 2345899999999888887665555554


Q ss_pred             -CCCCCEEecc----CCcCCCC-----chhhhcCCCCCCeecCCCCc--CcCCcchhc-cCCCCCCEEEccCCcCCCCcc
Q 045291          459 -CSSLEGLYLN----NNSLSGK-----IPRWLGNLTRLQYIIMPNNH--LEGPIPVEF-CQLDLLQILDISDNNISGRLI  525 (682)
Q Consensus       459 -l~~L~~L~l~----~n~~~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~  525 (682)
                       +++|++|+++    .|.+++.     ++..+.++++|++|++++|.  +++.....+ ..+++|+.|++++|++++...
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence             8999999996    5677753     45557789999999997654  665444444 348899999999999975345


Q ss_pred             hhhccCCCCCcEEECCCCcCCCC-chhhhhcCCCCCEEEccCccCccc
Q 045291          526 PSTFSNLKQIESLDLSYNKLNGK-MPHQLVELKTLEVFSVAYNNLSGE  572 (682)
Q Consensus       526 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~  572 (682)
                      +..+.++++|++|++++|+++.. ++.....+++|+.|++++|+++..
T Consensus       481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            66678899999999999998644 344556799999999999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.2e-26  Score=230.73  Aligned_cols=250  Identities=20%  Similarity=0.229  Sum_probs=186.9

Q ss_pred             CCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCc-CCCcCchhhhhCCCCCC
Q 045291          337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH-LTGEIPEYLAVGCVNLN  415 (682)
Q Consensus       337 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~  415 (682)
                      .+++++|++++|.+++..+..+ ..+++|++|++++|.+++..+..|.++++|++|++++|. +. .++...+..+++|+
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLH  108 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCC
Confidence            3567777777777763333333 347777788887777777667777788888888888886 54 55555555778888


Q ss_pred             EEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCc
Q 045291          416 SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH  495 (682)
Q Consensus       416 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  495 (682)
                      +|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence            88888888887777778888888888888888887767778888899999999998886666678888999999999999


Q ss_pred             CcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          496 LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       496 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      +++..+..|..+++|+.|++++|++++ ..+..+..+++|+.|++++|++....+.. .....++.+..+.+.+.|..|+
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             ccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence            988888889999999999999999986 66677889999999999999887543321 1112345556788899998887


Q ss_pred             cccc--ccccCcccccC
Q 045291          576 WTAQ--FATFNESSYEG  590 (682)
Q Consensus       576 ~~~~--~~~l~~~~~~~  590 (682)
                      .+..  +..+...++.|
T Consensus       267 ~l~g~~l~~l~~~~l~~  283 (285)
T 1ozn_A          267 RLAGRDLKRLAANDLQG  283 (285)
T ss_dssp             GGTTCBGGGSCGGGSCC
T ss_pred             HhCCcChhhcCHHHhcc
Confidence            5433  34444444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2e-26  Score=233.04  Aligned_cols=225  Identities=20%  Similarity=0.224  Sum_probs=166.8

Q ss_pred             CCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEE
Q 045291          338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSL  417 (682)
Q Consensus       338 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  417 (682)
                      ..++.|++++|.+. .+|..++. +++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEE
T ss_pred             cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEE
Confidence            45667777777776 66666655 677777777777777 56666777777777777777776 6666543 57777777


Q ss_pred             EccCCcCCCcccccCC---------CCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCe
Q 045291          418 ALSNNNLQGHMFSRNF---------NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQY  488 (682)
Q Consensus       418 ~l~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  488 (682)
                      ++++|++.+..|..+.         ++++|++|++++|.+. .+|..+..+++|++|++++|.+.+ +|..+..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            7777766666555443         3778888888888777 567777778888888888888874 4556777888888


Q ss_pred             ecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCcc
Q 045291          489 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN  568 (682)
Q Consensus       489 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  568 (682)
                      |++++|.+.+..|..+..+++|+.|++++|++.+ .+|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..+.
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            8888888877777778888888888888877776 667777888888888888888887888888888888888877765


Q ss_pred             Cc
Q 045291          569 LS  570 (682)
Q Consensus       569 l~  570 (682)
                      +.
T Consensus       313 ~~  314 (328)
T 4fcg_A          313 QA  314 (328)
T ss_dssp             SC
T ss_pred             HH
Confidence            54

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.8e-28  Score=243.65  Aligned_cols=240  Identities=20%  Similarity=0.198  Sum_probs=177.9

Q ss_pred             CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCC
Q 045291          336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLN  415 (682)
Q Consensus       336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  415 (682)
                      .+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++     ..++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~  102 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIE  102 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCC
T ss_pred             cCCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcC
Confidence            34567777777777764333344 347778888888877765443  777888888888888776 443     247888


Q ss_pred             EEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhh-cCCCCCCeecCCCC
Q 045291          416 SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQYIIMPNN  494 (682)
Q Consensus       416 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n  494 (682)
                      +|++++|++++..+..   +++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus       103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            8888888887665543   5678888888888887777778888888888888888887666665 46788888888888


Q ss_pred             cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCc-ccC
Q 045291          495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS-GEI  573 (682)
Q Consensus       495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~  573 (682)
                      .+++..+  ...+++|+.|++++|++++  ++..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. ...
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred             cCccccc--ccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence            8876532  2347888999999998875  4555888888999999999888 46677888888999999999888 455


Q ss_pred             CcccccccccCcccccCCC
Q 045291          574 PEWTAQFATFNESSYEGNI  592 (682)
Q Consensus       574 ~~~~~~~~~l~~~~~~~n~  592 (682)
                      |.++..++.++.+++.++.
T Consensus       255 ~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          255 RDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             HHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhccccceEEECCCch
Confidence            6666777777777766443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.3e-26  Score=231.41  Aligned_cols=224  Identities=19%  Similarity=0.254  Sum_probs=203.5

Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  441 (682)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|++. .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            579999999999998 56667888999999999999998 8887664 7999999999999999 567788899999999


Q ss_pred             ECCCCcCcccCCccccC---------CCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCE
Q 045291          442 LLEGNRFVGEIPQSLSK---------CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI  512 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  512 (682)
                      ++++|.+.+.+|..+..         +++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|+.
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            99999888888876654         999999999999998 788889999999999999999996 4557999999999


Q ss_pred             EEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCC
Q 045291          513 LDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNI  592 (682)
Q Consensus       513 L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~  592 (682)
                      |++++|++.+ .+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|+++..++.++.+.+..+.
T Consensus       234 L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          234 LDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            9999999987 788899999999999999999999999999999999999999999999999999999998888777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.3e-26  Score=247.24  Aligned_cols=247  Identities=20%  Similarity=0.198  Sum_probs=201.8

Q ss_pred             CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCC
Q 045291          336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLN  415 (682)
Q Consensus       336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  415 (682)
                      .+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++..+  |..+++|++|++++|.+. .++.     .++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~  102 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIE  102 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcC
Confidence            345788888888888754444444 48888999998888876554  888899999999999887 4442     47899


Q ss_pred             EEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhc-CCCCCCeecCCCC
Q 045291          416 SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG-NLTRLQYIIMPNN  494 (682)
Q Consensus       416 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n  494 (682)
                      .|++++|.+++..+.   .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+. .+++|++|+|++|
T Consensus       103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            999999999887665   357899999999999988888899999999999999999987887776 7899999999999


Q ss_pred             cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc-cC
Q 045291          495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG-EI  573 (682)
Q Consensus       495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~  573 (682)
                      .+++..+  ...+++|+.|+|++|.+++  +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.| ..
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence            9987633  3458999999999999986  55558899999999999999995 67778889999999999999984 45


Q ss_pred             CcccccccccCccccc-------CCCCCCCCCC
Q 045291          574 PEWTAQFATFNESSYE-------GNIFLCGLPL  599 (682)
Q Consensus       574 ~~~~~~~~~l~~~~~~-------~n~~~c~~~~  599 (682)
                      |.++..+..++.+.+.       .+++.|.|+.
T Consensus       255 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             HHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            5666667777766665       7888887753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.8e-27  Score=236.36  Aligned_cols=249  Identities=20%  Similarity=0.221  Sum_probs=194.6

Q ss_pred             hcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCC-CCCChhhh------hcCCCceEEEecCCcCCcCCCccc
Q 045291          311 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ-GHMPVEIG------DILPSLFSFNISTNALHGSIPSSF  383 (682)
Q Consensus       311 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~------~~l~~L~~L~l~~n~i~~~~~~~~  383 (682)
                      +...+|+++++++|.+ . .+..+.  ..|+.|++++|.+. ..+|....      ..+++|++|++++|.+++..|..+
T Consensus        40 ~~~~~L~~l~l~~n~l-~-~p~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-A-DLGQFT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT-C-CCHHHH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc-c-cHHHHH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3445566666666666 2 122111  12777888888773 34565543      138899999999999998888765


Q ss_pred             --CCCCCCCEEEccCCcCCCcCchhhhhCC-----CCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCccc--CCc
Q 045291          384 --GNMKFLQILDLSNNHLTGEIPEYLAVGC-----VNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGE--IPQ  454 (682)
Q Consensus       384 --~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~  454 (682)
                        ..+++|++|++++|++.+. |..+. .+     ++|++|++++|++.+..+..+..+++|++|++++|.+.+.  .+.
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence              8999999999999999854 64443 34     8999999999999998888999999999999999997654  233


Q ss_pred             cc--cCCCCCCEEeccCCcCCC---CchhhhcCCCCCCeecCCCCcCcCCcc-hhccCCCCCCEEEccCCcCCCCcchhh
Q 045291          455 SL--SKCSSLEGLYLNNNSLSG---KIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLIPST  528 (682)
Q Consensus       455 ~~--~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~  528 (682)
                      .+  ..+++|++|++++|.+.+   .....+..+++|++|++++|.+++..| ..+..+++|+.|++++|+++.  +|..
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~  271 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKG  271 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSS
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhhh
Confidence            33  789999999999999983   222445678999999999999998775 456678999999999999984  5665


Q ss_pred             ccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291          529 FSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG  571 (682)
Q Consensus       529 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  571 (682)
                      +.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            55  8999999999999976 55 8889999999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=3.8e-25  Score=218.61  Aligned_cols=227  Identities=21%  Similarity=0.251  Sum_probs=189.7

Q ss_pred             EEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccC
Q 045291          342 FLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN  421 (682)
Q Consensus       342 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  421 (682)
                      .++..+..+. .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++
T Consensus        11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence            3555555555 566544   357889999999888777778888999999999999887 66665666789999999999


Q ss_pred             CcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCC-chhhhcCCCCCCeecCCCCcCcCCc
Q 045291          422 NNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLTRLQYIIMPNNHLEGPI  500 (682)
Q Consensus       422 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~  500 (682)
                      |++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            999888888888999999999999999877777788999999999999999863 5888999999999999999999887


Q ss_pred             chhccCCCCCC----EEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          501 PVEFCQLDLLQ----ILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       501 ~~~~~~l~~L~----~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      +..+..+++|+    .|++++|++++ ..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             HHHhhhhhhccccceeeecCCCcccc-cCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            77777777776    89999999985 4445444 45899999999999988777788999999999999999998885

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=6.4e-28  Score=266.65  Aligned_cols=229  Identities=18%  Similarity=0.160  Sum_probs=115.3

Q ss_pred             CCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcC-CCcccCCCCCCCEEEccC---------CcCCCcCchh
Q 045291          337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS-IPSSFGNMKFLQILDLSN---------NHLTGEIPEY  406 (682)
Q Consensus       337 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~---------n~~~~~~~~~  406 (682)
                      +++|++|++++|.+++.....+...+++|++|++++| +... .+.....+++|++|++++         +.+++.....
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            4556666666665443222222334566666666655 2211 112222355666666632         2333222222


Q ss_pred             hhhCCCCCCEEEccCCcCCCcccccCC-CCCCccEEECC--C----CcCccc-----CCccccCCCCCCEEeccCCcCCC
Q 045291          407 LAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLE--G----NRFVGE-----IPQSLSKCSSLEGLYLNNNSLSG  474 (682)
Q Consensus       407 ~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~  474 (682)
                      +..++++|+.|.+..|.+++.....+. .+++|+.|+++  +    +.++..     .+..+..+++|++|++++ .+++
T Consensus       367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~  445 (594)
T 2p1m_B          367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD  445 (594)
T ss_dssp             HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred             HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence            333466666666666666544333332 35666666666  2    233311     112245566777777765 4444


Q ss_pred             CchhhhcC-CCCCCeecCCCCcCcCCcchhc-cCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhh
Q 045291          475 KIPRWLGN-LTRLQYIIMPNNHLEGPIPVEF-CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQ  552 (682)
Q Consensus       475 ~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  552 (682)
                      ..+..+.. +++|++|+|++|.+++.....+ .++++|+.|++++|++++.........+++|+.|++++|+++......
T Consensus       446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  525 (594)
T 2p1m_B          446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL  525 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred             HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHH
Confidence            44444433 6667777777776654433333 456677777777777643112223445667777777777664222222


Q ss_pred             h-hcCCCCCEEEccCc
Q 045291          553 L-VELKTLEVFSVAYN  567 (682)
Q Consensus       553 l-~~l~~L~~L~l~~n  567 (682)
                      + ..++.|+...+..+
T Consensus       526 l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          526 LGQKMPKLNVEVIDER  541 (594)
T ss_dssp             HHHHCTTEEEEEECSS
T ss_pred             HHHhCCCCEEEEecCC
Confidence            3 34566655555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=6.1e-27  Score=236.19  Aligned_cols=266  Identities=15%  Similarity=0.172  Sum_probs=213.6

Q ss_pred             CCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEe
Q 045291          291 LEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI  370 (682)
Q Consensus       291 L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  370 (682)
                      ++..+++.+.+. ..+..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+   +..+++|++|++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence            455666666664 3344446667788888888888888766677888889999999988875443   344889999999


Q ss_pred             cCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcc
Q 045291          371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVG  450 (682)
Q Consensus       371 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  450 (682)
                      ++|.+++..     ..++|++|++++|.+. .++..   .+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            999887443     3478999999999987 44432   46789999999999998888888889999999999999987


Q ss_pred             cCCccc-cCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhc
Q 045291          451 EIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF  529 (682)
Q Consensus       451 ~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~  529 (682)
                      ..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++..+ .+..+++|+.|++++|++++  +|..+
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~--l~~~~  233 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL--IEKAL  233 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE--ECTTC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc--hhhHh
Confidence            766666 4789999999999999854 32 3458999999999999996554 48899999999999999984  67889


Q ss_pred             cCCCCCcEEECCCCcCC-CCchhhhhcCCCCCEEEccCc-cCcccCC
Q 045291          530 SNLKQIESLDLSYNKLN-GKMPHQLVELKTLEVFSVAYN-NLSGEIP  574 (682)
Q Consensus       530 ~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n-~l~~~~~  574 (682)
                      ..+++|+.|++++|++. +..+..+..+++|+.+++++| .+.+..|
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            99999999999999998 778888999999999999855 4454333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=2e-24  Score=212.37  Aligned_cols=208  Identities=24%  Similarity=0.280  Sum_probs=183.1

Q ss_pred             CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEE
Q 045291          363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLL  442 (682)
Q Consensus       363 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  442 (682)
                      .+.+.++++++.++. +|..+.  +++++|++++|.+. .++...+..+++|++|++++|+++...+..|..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            467889999999885 454432  67999999999998 67766667899999999999999988777788899999999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCC
Q 045291          443 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  522 (682)
Q Consensus       443 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~  522 (682)
                      +++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            99999998777888999999999999999998888888999999999999999998888889999999999999999986


Q ss_pred             CcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          523 RLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       523 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                       ..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus       172 -~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          172 -VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             -CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             -eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence             6667789999999999999999987777888899999999999999988874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=8.4e-28  Score=265.68  Aligned_cols=207  Identities=14%  Similarity=0.112  Sum_probs=122.3

Q ss_pred             cCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCC---------CCCcccCCCCC-CCCCCccEEEccCCcCCCCCCh
Q 045291          287 HQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN---------DSIGGPFRLPI-HPHRRLRFLDVSNNNFQGHMPV  356 (682)
Q Consensus       287 ~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~  356 (682)
                      .+++|+.|++++| +.+.....+...+++|++|++..         +.+++.....+ ..+++|+.|.+..+.+++....
T Consensus       312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~  390 (594)
T 2p1m_B          312 QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI  390 (594)
T ss_dssp             TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH
T ss_pred             cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH
Confidence            4455566666555 33222223344456666666632         22222111111 1256777777777776654444


Q ss_pred             hhhhcCCCceEEEec--C----CcCCcC-----CCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCC
Q 045291          357 EIGDILPSLFSFNIS--T----NALHGS-----IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ  425 (682)
Q Consensus       357 ~~~~~l~~L~~L~l~--~----n~i~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~  425 (682)
                      .+...+++|+.|+++  +    +.++..     .+..+..+++|++|++++ .+++.....+...+++|+.|++++|.++
T Consensus       391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~  469 (594)
T 2p1m_B          391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDS  469 (594)
T ss_dssp             HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred             HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCc
Confidence            454457888888887  3    344421     112256678888888876 5554444444445788888888888876


Q ss_pred             CcccccC-CCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCchhhh-cCCCCCCeecCCCCc
Q 045291          426 GHMFSRN-FNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQYIIMPNNH  495 (682)
Q Consensus       426 ~~~~~~~-~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~  495 (682)
                      +.....+ .++++|++|++++|.+++... .....+++|++|++++|+++......+ ..+++|+...+..+.
T Consensus       470 ~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            5544433 457888888888888854332 234557889999999998854433334 456777766666553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=4.3e-24  Score=210.03  Aligned_cols=203  Identities=23%  Similarity=0.295  Sum_probs=140.1

Q ss_pred             CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEE
Q 045291          339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA  418 (682)
Q Consensus       339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  418 (682)
                      ..+.++++++.++ .+|..+   .++++.|++++|.+.+..+..|.++++|++|++++|.+. .++..++..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            4566777777766 455543   246777777777777666666777777777777777776 66666665677777777


Q ss_pred             ccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcC
Q 045291          419 LSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG  498 (682)
Q Consensus       419 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  498 (682)
                      +++|++.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            77777776666666667777777777777776666666777777777777777775555556677777777777777776


Q ss_pred             CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291          499 PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       499 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  547 (682)
                      ..+..|..+++|+.|++++|++++ ..+..|..+++|+.|++++|++..
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             eChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeC
Confidence            666667777777777777777765 455566677777777777777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=9.1e-24  Score=229.55  Aligned_cols=248  Identities=23%  Similarity=0.271  Sum_probs=205.6

Q ss_pred             CCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE
Q 045291          289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF  368 (682)
Q Consensus       289 ~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  368 (682)
                      ++|+.|++++|.++ .+|.    .+++|++|++++|.++.+..    .+++|++|++++|.++ .+|.    .+++|+.|
T Consensus        61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT-HLPA----LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCC-CCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCC-CCCC----CCCCcCEE
Confidence            68999999999998 5564    57899999999999987544    6789999999999998 4555    37899999


Q ss_pred             EecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291          369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF  448 (682)
Q Consensus       369 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  448 (682)
                      ++++|.+++. |.   .+++|++|++++|++. .++.    .+++|+.|++++|.+++..    ..+++|+.|++++|.+
T Consensus       127 ~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l  193 (622)
T 3g06_A          127 WIFGNQLTSL-PV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQL  193 (622)
T ss_dssp             ECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred             ECCCCCCCcC-CC---CCCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCC
Confidence            9999999864 33   3589999999999997 5654    4678999999999998754    3578999999999999


Q ss_pred             cccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh
Q 045291          449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST  528 (682)
Q Consensus       449 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~  528 (682)
                      .+ +|.   .+++|+.|++++|.+. .+|.   .+++|++|++++|.+++. |   ..+++|+.|++++|++++  +|. 
T Consensus       194 ~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~--lp~-  258 (622)
T 3g06_A          194 AS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTS--LPM-  258 (622)
T ss_dssp             SC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC--CCC-
T ss_pred             CC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCc--CCc-
Confidence            85 343   2579999999999998 4443   358899999999999964 3   466899999999999985  454 


Q ss_pred             ccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccccccc
Q 045291          529 FSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA  581 (682)
Q Consensus       529 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~  581 (682)
                        .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus       259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence              6789999999999999 6688899999999999999999988777555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1.6e-24  Score=214.76  Aligned_cols=205  Identities=22%  Similarity=0.193  Sum_probs=172.8

Q ss_pred             cCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccE
Q 045291          361 ILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKW  440 (682)
Q Consensus       361 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  440 (682)
                      .++++++++++++.++.. |..+  .+++++|++++|.+. .++...+..+++|+.|++++|++++..+.  ..+++|++
T Consensus         8 ~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             CSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             ccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            478899999999998854 4333  268999999999997 56555666899999999999998875443  67889999


Q ss_pred             EECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcC
Q 045291          441 LLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI  520 (682)
Q Consensus       441 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~  520 (682)
                      |++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            999999987 5677888899999999999999877778889999999999999999988888888999999999999999


Q ss_pred             CCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          521 SGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       521 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      ++ ..+..|..+++|+.|++++|+++ .+|..+...++|+.+++++|++.|.+.
T Consensus       161 ~~-l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          161 TE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             SC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             Cc-cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            86 66677888999999999999998 567777778899999999999988763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.8e-26  Score=230.73  Aligned_cols=247  Identities=26%  Similarity=0.287  Sum_probs=208.5

Q ss_pred             CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCC-cCCCcccC-------CCCCCCEEEccCCcCCCcCchhh
Q 045291          336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALH-GSIPSSFG-------NMKFLQILDLSNNHLTGEIPEYL  407 (682)
Q Consensus       336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~  407 (682)
                      ..++|+.|++++|.+  .+|..+...   |+.|++++|.+. ...+..+.       ++++|++|++++|.+.+.+|..+
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            456789999999999  788877663   899999999985 34555444       68999999999999998888876


Q ss_pred             h-hCCCCCCEEEccCCcCCCcccccCCCC-----CCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCC--chhh
Q 045291          408 A-VGCVNLNSLALSNNNLQGHMFSRNFNL-----TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRW  479 (682)
Q Consensus       408 ~-~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~  479 (682)
                      + ..+++|++|++++|++++. +..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            3 6799999999999999987 6666555     8999999999999988889999999999999999998754  3344


Q ss_pred             h--cCCCCCCeecCCCCcCcCC---cchhccCCCCCCEEEccCCcCCCCcch-hhccCCCCCcEEECCCCcCCCCchhhh
Q 045291          480 L--GNLTRLQYIIMPNNHLEGP---IPVEFCQLDLLQILDISDNNISGRLIP-STFSNLKQIESLDLSYNKLNGKMPHQL  553 (682)
Q Consensus       480 ~--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l  553 (682)
                      +  ..+++|++|++++|++++.   ....+..+++|+.|++++|++++ ..| ..+..+++|+.|++++|+++ .+|..+
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS-SCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc-ccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            4  8899999999999999842   23456788999999999999987 343 56777899999999999999 667666


Q ss_pred             hcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCC
Q 045291          554 VELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFL  594 (682)
Q Consensus       554 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~  594 (682)
                      .  ++|+.|++++|++++. |. +..+++++.+++.+|++.
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            5  8999999999999965 77 888999999999999865

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.2e-24  Score=213.10  Aligned_cols=225  Identities=24%  Similarity=0.270  Sum_probs=192.7

Q ss_pred             EEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc
Q 045291          368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR  447 (682)
Q Consensus       368 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  447 (682)
                      .+..+..+. .+|..+  .++|++|++++|.+. .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.
T Consensus        12 ~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSS--CTTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCC--CCCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            444555554 344433  257999999999998 6666566689999999999999998888889999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCC-cchhccCCCCCCEEEccCCcCCCCcch
Q 045291          448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNISGRLIP  526 (682)
Q Consensus       448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~  526 (682)
                      +.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|+.|++++|++++ ..+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~  166 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYC  166 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCH
Confidence            9988888999999999999999999977776799999999999999999875 58899999999999999999986 566


Q ss_pred             hhccCCCCCc----EEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          527 STFSNLKQIE----SLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       527 ~~~~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      ..+..+++|+    +|++++|++.+..+..+ ...+|+.|++++|.++...+..+..+.+++.+++.+|++.|+|+
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            7777777777    99999999996655544 44589999999999997666666889999999999999999996

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=3.9e-23  Score=224.58  Aligned_cols=227  Identities=23%  Similarity=0.265  Sum_probs=148.8

Q ss_pred             CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291          290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN  369 (682)
Q Consensus       290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  369 (682)
                      +|+.|++++|.++ .+|.    .+++|++|++++|.+..+..    .+++|+.|++++|.++ .+|..    +++|+.|+
T Consensus        82 ~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~  147 (622)
T 3g06_A           82 ELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVL----PPGLQELS  147 (622)
T ss_dssp             TCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCCC----CTTCCEEE
T ss_pred             CCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCCC----CCCCCEEE
Confidence            3444444444443 2332    34455555555555554322    3456667777777665 34432    46777777


Q ss_pred             ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCc
Q 045291          370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFV  449 (682)
Q Consensus       370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  449 (682)
                      +++|.+++. |.   .+++|+.|++++|.+. .+|    ..+++|+.|++++|++++...    .+++|+.|++++|.+.
T Consensus       148 Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~  214 (622)
T 3g06_A          148 VSDNQLASL-PA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT  214 (622)
T ss_dssp             CCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred             CcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc
Confidence            777776643 22   3456777777777776 555    246777777777777775332    2467888888888776


Q ss_pred             ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhc
Q 045291          450 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF  529 (682)
Q Consensus       450 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~  529 (682)
                      . +|.   .+++|++|++++|.+++ +|   ..+++|++|++++|.++.+.+    .+++|+.|+|++|+++.  +|..+
T Consensus       215 ~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~--lp~~l  280 (622)
T 3g06_A          215 S-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR--LPESL  280 (622)
T ss_dssp             S-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCS--CCGGG
T ss_pred             c-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCc--CCHHH
Confidence            3 332   24778888888888874 44   456788888888888885433    56788888888888874  57778


Q ss_pred             cCCCCCcEEECCCCcCCCCchhhhhcCC
Q 045291          530 SNLKQIESLDLSYNKLNGKMPHQLVELK  557 (682)
Q Consensus       530 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~  557 (682)
                      ..+++|+.|++++|++++..|..+..++
T Consensus       281 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          281 IHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             GGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             hhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            8888888888888888887777766544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.9e-25  Score=236.83  Aligned_cols=244  Identities=16%  Similarity=0.176  Sum_probs=194.4

Q ss_pred             CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEc
Q 045291          315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL  394 (682)
Q Consensus       315 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  394 (682)
                      +|+.|++++|.+.+..+..|..+++|++|++++|.+++..|   +..+++|++|++++|.+++..+     .++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            67777777777777666677777788888888887765444   3347888888888888774432     378888888


Q ss_pred             cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCcccc-CCCCCCEEeccCCcCC
Q 045291          395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS-KCSSLEGLYLNNNSLS  473 (682)
Q Consensus       395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~  473 (682)
                      ++|.+.+ ++..   .+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.++
T Consensus       107 ~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            8888873 3332   467899999999999888888888889999999999999887777775 7899999999999998


Q ss_pred             CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC-CCchhh
Q 045291          474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN-GKMPHQ  552 (682)
Q Consensus       474 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~  552 (682)
                      +..+  ...+++|++|+|++|.+++..+. +..+++|+.|++++|.+++  +|..+..+++|+.|++++|++. +.+|..
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            5533  34689999999999999976554 8889999999999999985  6777889999999999999998 667788


Q ss_pred             hhcCCCCCEEEcc-------CccCcccCCc
Q 045291          553 LVELKTLEVFSVA-------YNNLSGEIPE  575 (682)
Q Consensus       553 l~~l~~L~~L~l~-------~n~l~~~~~~  575 (682)
                      +..++.|+.++++       .++..|.++.
T Consensus       258 ~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             HHhCCCCcEEeccccccccCCCcccccCCc
Confidence            8888888888887       6666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.4e-23  Score=206.24  Aligned_cols=200  Identities=22%  Similarity=0.186  Sum_probs=92.6

Q ss_pred             CCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCE
Q 045291          337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS  416 (682)
Q Consensus       337 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  416 (682)
                      ++++++++++++.++ .+|..+   .++++.|++++|.+++..+..|..+++|++|++++|.+. .++..  ..+++|++
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGT   81 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCE
T ss_pred             cCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCE
Confidence            344445555544444 333332   234445555555544444444444555555555555444 23222  23444555


Q ss_pred             EEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcC
Q 045291          417 LALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL  496 (682)
Q Consensus       417 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  496 (682)
                      |++++|++.. .+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|+|++|++
T Consensus        82 L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            5555554442 233334444555555555554444444444455555555555554444444444445555555555555


Q ss_pred             cCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291          497 EGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       497 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      ++..+..|..+++|+.|+|++|+++.  +|..+...++|+.|++++|++.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCcc
Confidence            44444444444555555555555442  3333334444555555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.4e-23  Score=202.35  Aligned_cols=206  Identities=22%  Similarity=0.205  Sum_probs=164.5

Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  441 (682)
                      +++|+.|++++|.+...  ..+..+++|++|++++|.+. .++  .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            56777777777776632  24667788888888888876 343  23467888888888888887777777788888888


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291          442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  521 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  521 (682)
                      ++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|+.|++++|+++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            88888888777777888888888999888888777777788889999999999888887777888899999999999988


Q ss_pred             CCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccc
Q 045291          522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF  580 (682)
Q Consensus       522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  580 (682)
                      + ..+..+..+++|+.|++++|++.+.       ++.|+.++++.|.+++.+|.+++.+
T Consensus       195 ~-~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          195 S-VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             C-CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             c-cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            6 6677788889999999999988753       4568888899999999888866554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.5e-22  Score=196.64  Aligned_cols=183  Identities=22%  Similarity=0.249  Sum_probs=155.5

Q ss_pred             CCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEec
Q 045291          388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYL  467 (682)
Q Consensus       388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  467 (682)
                      ..++++++++.+. .+|..+   .++++.|++++|++.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            3567777777776 666543   257888888888888777777888888999999998888877788888999999999


Q ss_pred             cCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291          468 NNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       468 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  547 (682)
                      ++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++ ..+..|+.+++|+.|++++|++++
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCc
Confidence            9999987777888899999999999999998888888999999999999999986 666789999999999999999998


Q ss_pred             CchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          548 KMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       548 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      ..+..+..+++|+.|++++|++.|...+
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            8888899999999999999999987443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=9.5e-22  Score=193.41  Aligned_cols=204  Identities=24%  Similarity=0.289  Sum_probs=179.5

Q ss_pred             CceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEEC
Q 045291          364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLL  443 (682)
Q Consensus       364 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  443 (682)
                      .+..+++.++.+....  ....+++|++|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence            4555666666665432  3557889999999999987 5554  34699999999999999874  46788999999999


Q ss_pred             CCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC
Q 045291          444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  523 (682)
Q Consensus       444 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  523 (682)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++ 
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  171 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-  171 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-
Confidence            9999998888889999999999999999998888889999999999999999998888889999999999999999986 


Q ss_pred             cchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          524 LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       524 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      ..+..++.+++|+.|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            6777789999999999999999998888899999999999999999998885

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=4.1e-22  Score=200.22  Aligned_cols=227  Identities=19%  Similarity=0.186  Sum_probs=181.2

Q ss_pred             CCccEEEccCCcCCCCCChhh--hhcCCCceEEEecCCcCCcCCCccc--CCCCCCCEEEccCCcCCCcCc---hhhhhC
Q 045291          338 RRLRFLDVSNNNFQGHMPVEI--GDILPSLFSFNISTNALHGSIPSSF--GNMKFLQILDLSNNHLTGEIP---EYLAVG  410 (682)
Q Consensus       338 ~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~---~~~~~~  410 (682)
                      ..++.+.+.++.+.......+  ...+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+   ...+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            356778888776652211111  1125679999999999998888877  899999999999999986444   222336


Q ss_pred             CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCccc--C--CccccCCCCCCEEeccCCcCCCCchh----hhcC
Q 045291          411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGE--I--PQSLSKCSSLEGLYLNNNSLSGKIPR----WLGN  482 (682)
Q Consensus       411 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~  482 (682)
                      +++|++|++++|++.+..+..+..+++|++|++++|.+.+.  .  +..+..+++|++|++++|.++ .++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            89999999999999998888999999999999999997642  1  233467899999999999997 3333    3578


Q ss_pred             CCCCCeecCCCCcCcCCcchhccCC---CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCC
Q 045291          483 LTRLQYIIMPNNHLEGPIPVEFCQL---DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL  559 (682)
Q Consensus       483 l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  559 (682)
                      +++|++|+|++|.+++..|..+..+   ++|++|+|++|+++.  +|..+.  ++|++|++++|++++. |. +..+++|
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            8999999999999998877776666   799999999999984  565553  7999999999999965 33 6788999


Q ss_pred             CEEEccCccCcc
Q 045291          560 EVFSVAYNNLSG  571 (682)
Q Consensus       560 ~~L~l~~n~l~~  571 (682)
                      +.|++++|+++.
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=3.4e-22  Score=192.72  Aligned_cols=197  Identities=16%  Similarity=0.152  Sum_probs=134.5

Q ss_pred             CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCc-CCCcCchhhhhCCCCCCEEEccC-CcCCCcccccCCCCCCccE
Q 045291          363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH-LTGEIPEYLAVGCVNLNSLALSN-NNLQGHMFSRNFNLTNLKW  440 (682)
Q Consensus       363 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~  440 (682)
                      +++++|++++|.+++..+..|.++++|++|++++|. +. .++...+.++++|++|++++ |++++..+..|.++++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            467777777777776666667777777777777775 55 56655555677777777776 7777666666667777777


Q ss_pred             EECCCCcCcccCCccccCCCCCC---EEeccCC-cCCCCchhhhcCCCCCC-eecCCCCcCcCCcchhccCCCCCCEEEc
Q 045291          441 LLLEGNRFVGEIPQSLSKCSSLE---GLYLNNN-SLSGKIPRWLGNLTRLQ-YIIMPNNHLEGPIPVEFCQLDLLQILDI  515 (682)
Q Consensus       441 L~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L  515 (682)
                      |++++|.+.+ +|. +..+++|+   +|++++| .+.+..+..|.++++|+ +|++++|+++...+..|.. ++|+.|++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            7777777764 443 66666666   7777777 77655556677777777 7777777777554455555 67777777


Q ss_pred             cCCc-CCCCcchhhccCC-CCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCc
Q 045291          516 SDNN-ISGRLIPSTFSNL-KQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN  567 (682)
Q Consensus       516 s~n~-~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  567 (682)
                      ++|+ +++ ..+..|.++ ++|+.|++++|++++..+.   .+++|+.|+++++
T Consensus       187 ~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          187 NKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCCccc-CCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            7774 764 455667777 7777777777777744333   4567777777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=4.9e-21  Score=185.96  Aligned_cols=181  Identities=19%  Similarity=0.201  Sum_probs=165.2

Q ss_pred             CCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecC
Q 045291          412 VNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIM  491 (682)
Q Consensus       412 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  491 (682)
                      ...++++++++.++.... .+  .+.++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|+|
T Consensus        14 ~~~~~l~~~~~~l~~~p~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPS-GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCS-CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCC-CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            457889999999886543 33  368999999999999888889999999999999999999888888999999999999


Q ss_pred             CCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291          492 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG  571 (682)
Q Consensus       492 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  571 (682)
                      ++|.+++..+..|..+++|++|+|++|++++ ..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            9999998888899999999999999999986 667778999999999999999998888889999999999999999998


Q ss_pred             cCCcccccccccCcccccCCCCCCC
Q 045291          572 EIPEWTAQFATFNESSYEGNIFLCG  596 (682)
Q Consensus       572 ~~~~~~~~~~~l~~~~~~~n~~~c~  596 (682)
                      ..+..+..+.+++.+++.+|++.|+
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            7777788899999999999999998

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=9.2e-23  Score=209.69  Aligned_cols=255  Identities=18%  Similarity=0.149  Sum_probs=130.0

Q ss_pred             EEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCC----CCCCCCC-CccEEEccCCcCCCCCChhhhhc----CC
Q 045291          293 FVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFR----LPIHPHR-RLRFLDVSNNNFQGHMPVEIGDI----LP  363 (682)
Q Consensus       293 ~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~----l~  363 (682)
                      ..+++.+.+++.+|+. +....+|++|++++|.+.+...    ..+..++ +|++|++++|.+++..+..+...    .+
T Consensus         2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            3567788887766664 4444557777777777766544    4445555 67777777777765444444331    26


Q ss_pred             CceEEEecCCcCCcCCCcc----cCCC-CCCCEEEccCCcCCCcCchhhhh---C-CCCCCEEEccCCcCCCcccc----
Q 045291          364 SLFSFNISTNALHGSIPSS----FGNM-KFLQILDLSNNHLTGEIPEYLAV---G-CVNLNSLALSNNNLQGHMFS----  430 (682)
Q Consensus       364 ~L~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~~~---~-~~~L~~L~l~~n~l~~~~~~----  430 (682)
                      +|++|++++|.+++..+..    +..+ ++|++|++++|.+.+..+..+..   . .++|++|++++|++++....    
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            6667777766666544432    3333 56666666666665333222211   1 24566666666655532221    


Q ss_pred             cCCCCC-CccEEECCCCcCcccCCc----cccCC-CCCCEEeccCCcCCCC----chhhhcC-CCCCCeecCCCCcCcCC
Q 045291          431 RNFNLT-NLKWLLLEGNRFVGEIPQ----SLSKC-SSLEGLYLNNNSLSGK----IPRWLGN-LTRLQYIIMPNNHLEGP  499 (682)
Q Consensus       431 ~~~~l~-~L~~L~l~~n~~~~~~~~----~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~L~~n~l~~~  499 (682)
                      .+...+ +|++|++++|.+.+..+.    .+..+ ++|++|++++|.+.+.    ++..+.. .++|++|+|++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            222233 555555555555543332    22223 3555555555555431    2333333 23555555555555543


Q ss_pred             cc----hhccCCCCCCEEEccCCcCCCC------cchhhccCCCCCcEEECCCCcCCCC
Q 045291          500 IP----VEFCQLDLLQILDISDNNISGR------LIPSTFSNLKQIESLDLSYNKLNGK  548 (682)
Q Consensus       500 ~~----~~~~~l~~L~~L~Ls~n~~~~~------~~~~~~~~l~~L~~L~l~~n~l~~~  548 (682)
                      .+    ..+..+++|+.|++++|.+.+.      ..+..+..+++|+.|++++|++...
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            33    2234445555555555553220      0112334444555555555555433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.3e-22  Score=208.48  Aligned_cols=256  Identities=19%  Similarity=0.167  Sum_probs=185.8

Q ss_pred             EEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCCh---hhhhcCC-CceEEEecCCcCCcCCCcccCCC-----CC
Q 045291          318 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPV---EIGDILP-SLFSFNISTNALHGSIPSSFGNM-----KF  388 (682)
Q Consensus       318 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l-----~~  388 (682)
                      .++++.|.+++..+..+...++|++|++++|.+++..+.   ..+..++ +|++|++++|.+.+..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            356778888876665555666799999999998754442   2233467 89999999999887766666554     88


Q ss_pred             CCEEEccCCcCCCcCchhhh---hCC-CCCCEEEccCCcCCCccccc----CCC-CCCccEEECCCCcCcccC----Ccc
Q 045291          389 LQILDLSNNHLTGEIPEYLA---VGC-VNLNSLALSNNNLQGHMFSR----NFN-LTNLKWLLLEGNRFVGEI----PQS  455 (682)
Q Consensus       389 L~~L~l~~n~~~~~~~~~~~---~~~-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~n~~~~~~----~~~  455 (682)
                      |++|++++|.+.+..+..+.   ..+ ++|++|++++|++++..+..    +.. .++|++|++++|.+.+..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999998755444332   233 78999999999988665543    333 358999999999887533    344


Q ss_pred             ccCCC-CCCEEeccCCcCCCCchhhh----cCC-CCCCeecCCCCcCcCC----cchhccC-CCCCCEEEccCCcCCCCc
Q 045291          456 LSKCS-SLEGLYLNNNSLSGKIPRWL----GNL-TRLQYIIMPNNHLEGP----IPVEFCQ-LDLLQILDISDNNISGRL  524 (682)
Q Consensus       456 ~~~l~-~L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~~~~~~  524 (682)
                      +..++ +|++|++++|.+++..+..+    ..+ ++|++|+|++|.+++.    ++..+.. .++|+.|+|++|++++ .
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~  240 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG-P  240 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC-C
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc-H
Confidence            45555 89999999999887666444    445 5999999999998863    3444544 4589999999999876 3


Q ss_pred             c----hhhccCCCCCcEEECCCCcCCCCchh-------hhhcCCCCCEEEccCccCcccCC
Q 045291          525 I----PSTFSNLKQIESLDLSYNKLNGKMPH-------QLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       525 ~----~~~~~~l~~L~~L~l~~n~l~~~~~~-------~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      .    ...+..+++|++|++++|.+....+.       .+..+++|+.||+++|++....+
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            2    24457788999999999986654443       45567788899999999876544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.3e-20  Score=188.65  Aligned_cols=192  Identities=23%  Similarity=0.359  Sum_probs=148.1

Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  441 (682)
                      +++|++|++++|.+... + .+..+++|++|++++|.+. .++.  +..+++|++|++++|++.+.  ..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            55677777777766643 2 4666777777777777776 4444  44677777777777777654  256678888888


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291          442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  521 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  521 (682)
                      ++++|.+.+. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|+++
T Consensus       113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            8888888754 2 37888889999999988875544  7888999999999999886554  888999999999999998


Q ss_pred             CCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291          522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG  571 (682)
Q Consensus       522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  571 (682)
                      + . +. +..+++|++|++++|++++..+  +..+++|+.|++++|++++
T Consensus       187 ~-~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 D-I-SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             C-C-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             c-C-hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            6 3 32 7888999999999999986553  7889999999999999975

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=3.9e-22  Score=203.34  Aligned_cols=256  Identities=17%  Similarity=0.166  Sum_probs=151.2

Q ss_pred             CCCEEEcCCCCCcCcCchHHHhcC--CCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceE
Q 045291          290 DLEFVDLSHIKMNGEFPTWLLENN--AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS  367 (682)
Q Consensus       290 ~L~~L~ls~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  367 (682)
                      .++.++++++.+.   +. .+..+  +.++.+++++|.+.+..+. +..+++|++|++++|.+.+.              
T Consensus        48 ~~~~l~l~~~~~~---~~-~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~--------------  108 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PD-VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS--------------  108 (336)
T ss_dssp             TSSEEECTTCBCC---HH-HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH--------------
T ss_pred             hheeeccccccCC---HH-HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH--------------
Confidence            3667777777654   22 23333  5566666666655554332 22345555555555544322              


Q ss_pred             EEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCC-cCCCc-ccccCCCCCCccEEECCC
Q 045291          368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN-NLQGH-MFSRNFNLTNLKWLLLEG  445 (682)
Q Consensus       368 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~  445 (682)
                                ..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++| .+++. .+..+..+++|++|++++
T Consensus       109 ----------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~  177 (336)
T 2ast_B          109 ----------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW  177 (336)
T ss_dssp             ----------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred             ----------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence                      0333444445555555555544433333222 3555555555555 34431 233344556666666666


Q ss_pred             C-cCccc-CCccccCCC-CCCEEeccCC--cCC-CCchhhhcCCCCCCeecCCCCc-CcCCcchhccCCCCCCEEEccCC
Q 045291          446 N-RFVGE-IPQSLSKCS-SLEGLYLNNN--SLS-GKIPRWLGNLTRLQYIIMPNNH-LEGPIPVEFCQLDLLQILDISDN  518 (682)
Q Consensus       446 n-~~~~~-~~~~~~~l~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  518 (682)
                      | .+.+. .+..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus       178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            6 55543 345566677 7888888777  444 3556677778888888888888 66666777888889999999988


Q ss_pred             c-CCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccccc
Q 045291          519 N-ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ  579 (682)
Q Consensus       519 ~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  579 (682)
                      . +.. .....+..+++|+.|++++| +....-..+.  ..+..|++++|++++..|.+.+.
T Consensus       258 ~~~~~-~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          258 YDIIP-ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTCCG-GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCH-HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence            5 321 22235778899999999988 4432222222  23556668999999888875443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3e-21  Score=186.13  Aligned_cols=196  Identities=18%  Similarity=0.184  Sum_probs=129.2

Q ss_pred             CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCc-CCcCCCcccCCCCCCCEEEccC-CcCCCcCchhhhhCCCCCCE
Q 045291          339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNA-LHGSIPSSFGNMKFLQILDLSN-NHLTGEIPEYLAVGCVNLNS  416 (682)
Q Consensus       339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~  416 (682)
                      ++++|++++|.++ .++...+..+++|++|++++|. ++...+..|.++++|++|++++ |++. .++...+.++++|++
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            5566666666665 3333223336666666666665 5555555666666666666666 6665 555555556666666


Q ss_pred             EEccCCcCCCcccccCCCCCCcc---EEECCCC-cCcccCCccccCCCCCC-EEeccCCcCCCCchhhhcCCCCCCeecC
Q 045291          417 LALSNNNLQGHMFSRNFNLTNLK---WLLLEGN-RFVGEIPQSLSKCSSLE-GLYLNNNSLSGKIPRWLGNLTRLQYIIM  491 (682)
Q Consensus       417 L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~L  491 (682)
                      |++++|++++. +. +..+++|+   +|++++| .+.+..+..|.++++|+ +|++++|.+....+..+.. ++|++|++
T Consensus       110 L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            66666666652 22 55666666   7777777 77766666677788888 8888888877433344444 78888888


Q ss_pred             CCCc-CcCCcchhccCC-CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCC
Q 045291          492 PNNH-LEGPIPVEFCQL-DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN  543 (682)
Q Consensus       492 ~~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n  543 (682)
                      ++|+ +++..+..|..+ ++|+.|++++|++++  +|..  .+++|+.|+++++
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~--l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC--CCCT--TCTTCSEEECTTC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCcccc--CChh--HhccCceeeccCc
Confidence            8884 876767778888 888888888888875  3332  5677888888776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.6e-22  Score=206.13  Aligned_cols=246  Identities=20%  Similarity=0.218  Sum_probs=193.6

Q ss_pred             CccEEEccCCcCCCCCChhhhhcC--CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCE
Q 045291          339 RLRFLDVSNNNFQGHMPVEIGDIL--PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS  416 (682)
Q Consensus       339 ~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  416 (682)
                      .++.++++++.+.   +..+.. +  ++++.+++++|.+.+..+. +..+++|++|++++|.+.+......+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4788999988775   233333 4  7999999999999877665 4578999999999999874423344558999999


Q ss_pred             EEccCCcCCCcccccCCCCCCccEEECCCC-cCccc-CCccccCCCCCCEEeccCC-cCCCC-chhhhcCCC-CCCeecC
Q 045291          417 LALSNNNLQGHMFSRNFNLTNLKWLLLEGN-RFVGE-IPQSLSKCSSLEGLYLNNN-SLSGK-IPRWLGNLT-RLQYIIM  491 (682)
Q Consensus       417 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~L  491 (682)
                      |++++|.+++..+..+..+++|++|++++| .+++. .+..+.++++|++|++++| .+++. ++..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999999888888888999999999999 56653 5667888999999999999 88754 677788999 9999999


Q ss_pred             CCC--cCc-CCcchhccCCCCCCEEEccCCc-CCCCcchhhccCCCCCcEEECCCCc-CCCCchhhhhcCCCCCEEEccC
Q 045291          492 PNN--HLE-GPIPVEFCQLDLLQILDISDNN-ISGRLIPSTFSNLKQIESLDLSYNK-LNGKMPHQLVELKTLEVFSVAY  566 (682)
Q Consensus       492 ~~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~  566 (682)
                      ++|  .++ +..+..+..+++|+.|++++|. +++ ..+..+..+++|++|++++|. +.......+..+++|+.|++++
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            999  455 3556677889999999999999 664 567788999999999999996 3322223578899999999999


Q ss_pred             ccCcccCCcccccc-cccCcccccCCCCC
Q 045291          567 NNLSGEIPEWTAQF-ATFNESSYEGNIFL  594 (682)
Q Consensus       567 n~l~~~~~~~~~~~-~~l~~~~~~~n~~~  594 (682)
                      | ++   .+.+..+ ..+..+++..|...
T Consensus       282 ~-i~---~~~~~~l~~~l~~L~l~~n~l~  306 (336)
T 2ast_B          282 I-VP---DGTLQLLKEALPHLQINCSHFT  306 (336)
T ss_dssp             S-SC---TTCHHHHHHHSTTSEESCCCSC
T ss_pred             c-cC---HHHHHHHHhhCcceEEecccCc
Confidence            9 32   1123333 34677777666544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.4e-21  Score=194.56  Aligned_cols=227  Identities=18%  Similarity=0.175  Sum_probs=135.1

Q ss_pred             CCCEEEcCCCCCcCcCchHH--HhcCCCCcEEEcCCCCCcccCCCCC--CCCCCccEEEccCCcCCCCCC----hhhhhc
Q 045291          290 DLEFVDLSHIKMNGEFPTWL--LENNAKLETLFLINDSIGGPFRLPI--HPHRRLRFLDVSNNNFQGHMP----VEIGDI  361 (682)
Q Consensus       290 ~L~~L~ls~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~~  361 (682)
                      .++.+.+.++.++......+  +...++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+    ..+. .
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence            46778888777653221111  1234668888888888887777666  778888888888888875444    1222 4


Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCc--CchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCcc
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE--IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLK  439 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  439 (682)
                      +++|++|++++|.+.+..+..|..+++|++|++++|++.+.  ++...                       .+..+++|+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------~~~~l~~L~  200 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL-----------------------CPHKFPAIQ  200 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS-----------------------CTTSSCCCC
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH-----------------------hhhcCCCCC
Confidence            77888888888888777777777778888888888776422  11111                       112344444


Q ss_pred             EEECCCCcCcccCC--c-cccCCCCCCEEeccCCcCCCCchhhhcCC---CCCCeecCCCCcCcCCcchhccCCCCCCEE
Q 045291          440 WLLLEGNRFVGEIP--Q-SLSKCSSLEGLYLNNNSLSGKIPRWLGNL---TRLQYIIMPNNHLEGPIPVEFCQLDLLQIL  513 (682)
Q Consensus       440 ~L~l~~n~~~~~~~--~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  513 (682)
                      +|++++|.++...+  . .+..+++|++|++++|.+.+..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|
T Consensus       201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L  277 (310)
T 4glp_A          201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL  277 (310)
T ss_dssp             SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred             EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence            45555554431110  0 23445555555555555554444444443   46666666666666 3333332  567777


Q ss_pred             EccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291          514 DISDNNISGRLIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       514 ~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      +|++|++++  .|. +..+++|+.|++++|+++
T Consensus       278 ~Ls~N~l~~--~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          278 DLSSNRLNR--APQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             ECCSCCCCS--CCC-TTSCCCCSCEECSSTTTS
T ss_pred             ECCCCcCCC--Cch-hhhCCCccEEECcCCCCC
Confidence            777777664  222 456667777777777665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=3.3e-22  Score=207.74  Aligned_cols=245  Identities=17%  Similarity=0.237  Sum_probs=143.3

Q ss_pred             HhcCCCCcEEEcCCCCCcccCC----CCCCCCCCccEEEccCCcC---CCCCChhhhhcCCCceEEEecCCcCCcCCCcc
Q 045291          310 LENNAKLETLFLINDSIGGPFR----LPIHPHRRLRFLDVSNNNF---QGHMPVEIGDILPSLFSFNISTNALHGSIPSS  382 (682)
Q Consensus       310 ~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  382 (682)
                      +..+++|++|++++|.+.....    ..+..+++|++|++++|.+   .+.+|..+..                  +...
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~------------------l~~~   89 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL------------------LLQA   89 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH------------------HHHH
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH------------------HHHH
Confidence            4566777777777777665322    2355666777777776533   2333433310                  0012


Q ss_pred             cCCCCCCCEEEccCCcCCCc----CchhhhhCCCCCCEEEccCCcCCCcccccC----CCC---------CCccEEECCC
Q 045291          383 FGNMKFLQILDLSNNHLTGE----IPEYLAVGCVNLNSLALSNNNLQGHMFSRN----FNL---------TNLKWLLLEG  445 (682)
Q Consensus       383 ~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~l~~  445 (682)
                      +..+++|++|++++|.+.+.    ++..+ ..+++|++|++++|.++...+..+    ..+         ++|++|++++
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence            23445555555555554421    22222 234555555555555442222111    112         5667777777


Q ss_pred             CcCcc-cCC---ccccCCCCCCEEeccCCcCCC-----CchhhhcCCCCCCeecCCCCcCc----CCcchhccCCCCCCE
Q 045291          446 NRFVG-EIP---QSLSKCSSLEGLYLNNNSLSG-----KIPRWLGNLTRLQYIIMPNNHLE----GPIPVEFCQLDLLQI  512 (682)
Q Consensus       446 n~~~~-~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~  512 (682)
                      |.+.. ..+   ..+..+++|++|++++|.+..     ..+..+..+++|++|+|++|.++    ..++..+..+++|+.
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            66652 222   355566777777777777652     23335667777777777777775    455666777778888


Q ss_pred             EEccCCcCCCCc----chhhcc--CCCCCcEEECCCCcCCC----Cchhhh-hcCCCCCEEEccCccCcccCC
Q 045291          513 LDISDNNISGRL----IPSTFS--NLKQIESLDLSYNKLNG----KMPHQL-VELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       513 L~Ls~n~~~~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      |+|++|++++ .    ++..+.  .+++|+.|++++|.++.    .+|..+ ..+++|+.|++++|++++..+
T Consensus       249 L~L~~n~i~~-~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          249 LGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             EECTTCCCCH-HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EECCCCCCch-hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            8888887764 2    244553  37788888888888876    366666 557888888888888876553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=2.5e-20  Score=186.55  Aligned_cols=192  Identities=21%  Similarity=0.338  Sum_probs=132.4

Q ss_pred             CCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCE
Q 045291          337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS  416 (682)
Q Consensus       337 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  416 (682)
                      +++|++|++++|.+. .++ .+. .+++|++|++++|.+.+..+  +..+++|++|++++|++. .++.  +..+++|++
T Consensus        40 l~~L~~L~l~~~~i~-~l~-~~~-~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~  111 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSIKT  111 (308)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCCE
T ss_pred             cCCcCEEEeeCCCcc-Cch-hhh-ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCCCCE
Confidence            445666666666665 333 232 36677777777776664433  667777777777777765 4442  335777777


Q ss_pred             EEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcC
Q 045291          417 LALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL  496 (682)
Q Consensus       417 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  496 (682)
                      |++++|++++..  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+
T Consensus       112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            777777776543  26677778888888877765433  6777888888888888775433  77788888888888888


Q ss_pred             cCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291          497 EGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       497 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  547 (682)
                      ++..+  +..+++|+.|++++|++++  .+ .+..+++|+.|++++|++++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEEEEEEC
T ss_pred             CcChh--hcCCCCCCEEEccCCccCc--cc-cccCCCCCCEEEccCCeeec
Confidence            76544  6778888888888888875  33 37788888888888888874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=5.2e-21  Score=195.51  Aligned_cols=242  Identities=20%  Similarity=0.101  Sum_probs=145.0

Q ss_pred             cEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCC-CcccCCCCCCCE-EEc
Q 045291          317 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSI-PSSFGNMKFLQI-LDL  394 (682)
Q Consensus       317 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~-L~l  394 (682)
                      +.++.++++++.+... +  .+++++|++++|+++ .+|...+..+++|++|+|++|.+.+.+ +..|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSD-L--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTT-C--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcC-c--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            3455666666654321 1  346777777777776 555554445777777777777765433 346667776654 444


Q ss_pred             cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCC-CcCcccCCccccCCC-CCCEEeccCCcC
Q 045291          395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG-NRFVGEIPQSLSKCS-SLEGLYLNNNSL  472 (682)
Q Consensus       395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~-~L~~L~l~~n~~  472 (682)
                      .+|++. .++...+.++++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.+
T Consensus        88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            556665 56555566677777777777777766655555566666777654 445544445555553 466777777777


Q ss_pred             CCCchhhhcCCCCCCeecCCC-CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchh
Q 045291          473 SGKIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH  551 (682)
Q Consensus       473 ~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  551 (682)
                      +. ++.......+|+++++.+ |.++.+.+.+|.++++|+.|++++|+++. ..+..|   .+|++|.+.++.-...+|.
T Consensus       167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~~~---~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGL---ENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSSSC---TTCCEEECTTCTTCCCCCC
T ss_pred             cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChhhh---ccchHhhhccCCCcCcCCC
Confidence            63 333333455677777754 55665555667777777777777777764 333333   3444444444433334443


Q ss_pred             hhhcCCCCCEEEccCccC
Q 045291          552 QLVELKTLEVFSVAYNNL  569 (682)
Q Consensus       552 ~l~~l~~L~~L~l~~n~l  569 (682)
                       +..+++|+.++++++..
T Consensus       242 -l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          242 -LEKLVALMEASLTYPSH  258 (350)
T ss_dssp             -TTTCCSCCEEECSCHHH
T ss_pred             -chhCcChhhCcCCCCcc
Confidence             56677777777765433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=4.1e-22  Score=207.07  Aligned_cols=244  Identities=18%  Similarity=0.226  Sum_probs=193.7

Q ss_pred             CCChhhhhcCCCceEEEecCCcCCcCCC----cccCCCCCCCEEEccCCcC---CCcCchhh------hhCCCCCCEEEc
Q 045291          353 HMPVEIGDILPSLFSFNISTNALHGSIP----SSFGNMKFLQILDLSNNHL---TGEIPEYL------AVGCVNLNSLAL  419 (682)
Q Consensus       353 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~~~~------~~~~~~L~~L~l  419 (682)
                      .++..+.. +++|+.|++++|.+....+    ..+..+++|++|++++|.+   .+.+|..+      +..+++|++|++
T Consensus        23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            44555544 7899999999998876533    4577899999999999754   34455444      247899999999


Q ss_pred             cCCcCCC----cccccCCCCCCccEEECCCCcCcccCCcc----ccCC---------CCCCEEeccCCcCC-CCch---h
Q 045291          420 SNNNLQG----HMFSRNFNLTNLKWLLLEGNRFVGEIPQS----LSKC---------SSLEGLYLNNNSLS-GKIP---R  478 (682)
Q Consensus       420 ~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~l---------~~L~~L~l~~n~~~-~~~~---~  478 (682)
                      ++|.+..    ..+..+..+++|++|++++|.+....+..    +..+         ++|++|++++|++. +.++   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9999987    35667778999999999999987543333    3334         89999999999997 3444   4


Q ss_pred             hhcCCCCCCeecCCCCcCcC-----CcchhccCCCCCCEEEccCCcCCC---CcchhhccCCCCCcEEECCCCcCCCC--
Q 045291          479 WLGNLTRLQYIIMPNNHLEG-----PIPVEFCQLDLLQILDISDNNISG---RLIPSTFSNLKQIESLDLSYNKLNGK--  548 (682)
Q Consensus       479 ~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~--  548 (682)
                      .+..+++|++|++++|.++.     ..+..+..+++|+.|+|++|.++.   ..++..+..+++|+.|+|++|+++..  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            67789999999999999983     334478899999999999999951   14678899999999999999999865  


Q ss_pred             --chhhhhc--CCCCCEEEccCccCcc----cCCccc-ccccccCcccccCCCCCCCC
Q 045291          549 --MPHQLVE--LKTLEVFSVAYNNLSG----EIPEWT-AQFATFNESSYEGNIFLCGL  597 (682)
Q Consensus       549 --~~~~l~~--l~~L~~L~l~~n~l~~----~~~~~~-~~~~~l~~~~~~~n~~~c~~  597 (682)
                        ++..+..  +++|+.|++++|+++.    .+|..+ ..+++++.+++.+|+.....
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              4666644  8999999999999997    477656 45799999999999877654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=2.5e-20  Score=176.52  Aligned_cols=156  Identities=22%  Similarity=0.223  Sum_probs=141.3

Q ss_pred             CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCC
Q 045291          415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN  494 (682)
Q Consensus       415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  494 (682)
                      +.++.+++.++.... .+  .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~iP~-~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCS-SC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCC-cc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            678889988886543 33  368999999999999888889999999999999999999888999999999999999999


Q ss_pred             cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      .++...+..|.++++|+.|+|++|++++ ..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            9998888889999999999999999997 778899999999999999999998888889999999999999999998665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.1e-19  Score=171.14  Aligned_cols=179  Identities=21%  Similarity=0.206  Sum_probs=132.8

Q ss_pred             CEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccC
Q 045291          390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN  469 (682)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  469 (682)
                      +.++.+++.+. .+|...   .++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            34555555554 455432   34677777777777666666666777777777777777766666677788888888888


Q ss_pred             CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCc
Q 045291          470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM  549 (682)
Q Consensus       470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  549 (682)
                      |.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++ ..+..+..+++|+.|++++|.+.+  
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~--  162 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC--  162 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec--
Confidence            88876666667788888888888888887777778888888888888888875 556668888888888888887764  


Q ss_pred             hhhhhcCCCCCEEEccCccCcccCCcccccc
Q 045291          550 PHQLVELKTLEVFSVAYNNLSGEIPEWTAQF  580 (682)
Q Consensus       550 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  580 (682)
                           .+++|+.|+++.|.+++.+|++++.+
T Consensus       163 -----~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          163 -----TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             -----CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             -----CCCCHHHHHHHHHhCCceeeccCccc
Confidence                 34578888888899988888765544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.1e-19  Score=185.52  Aligned_cols=240  Identities=17%  Similarity=0.173  Sum_probs=180.0

Q ss_pred             CEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceE-EEe
Q 045291          292 EFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS-FNI  370 (682)
Q Consensus       292 ~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~-L~l  370 (682)
                      +.++.++++++ .+|..+   .+++++|++++|.++.+...+|.++++|++|++++|.+.+.+|...+..++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777888887 667543   3578999999999998888888899999999999998876777766666777665 566


Q ss_pred             cCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccC-CcCCCcccccCCCCC-CccEEECCCCcC
Q 045291          371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN-NNLQGHMFSRNFNLT-NLKWLLLEGNRF  448 (682)
Q Consensus       371 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~~  448 (682)
                      ..|.++...+..|..+++|++|++++|++. .++...+....++..+++.+ +++.......|..+. .++.|++++|.+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            778888888888999999999999999987 66655554566778888865 567666666666654 688899999998


Q ss_pred             cccCCccccCCCCCCEEeccC-CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCc-CCCCcch
Q 045291          449 VGEIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLIP  526 (682)
Q Consensus       449 ~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~  526 (682)
                      ..+.+..| ...+|+++++.+ |.++...++.|.++++|++|++++|+++...+..|   .+|+.|.+.++. ++  ..|
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~--~lP  240 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK--KLP  240 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC--CCC
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC--cCC
Confidence            86555555 456788999875 56665555678889999999999999987666554   456666655543 43  344


Q ss_pred             hhccCCCCCcEEECCCC
Q 045291          527 STFSNLKQIESLDLSYN  543 (682)
Q Consensus       527 ~~~~~l~~L~~L~l~~n  543 (682)
                       .+..+++|+.+++.++
T Consensus       241 -~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          241 -TLEKLVALMEASLTYP  256 (350)
T ss_dssp             -CTTTCCSCCEEECSCH
T ss_pred             -CchhCcChhhCcCCCC
Confidence             4778889999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.5e-19  Score=170.03  Aligned_cols=162  Identities=25%  Similarity=0.219  Sum_probs=93.4

Q ss_pred             CCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEec
Q 045291          388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYL  467 (682)
Q Consensus       388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  467 (682)
                      +|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            3444444444443 333333334444444444444444444444445555555555555555444445556666666666


Q ss_pred             cCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291          468 NNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       468 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  547 (682)
                      ++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.+        .+++|+.|+++.|++++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCc
Confidence            6666665555556666666666666666666555566667777777777776653        34567777777777777


Q ss_pred             CchhhhhcCCC
Q 045291          548 KMPHQLVELKT  558 (682)
Q Consensus       548 ~~~~~l~~l~~  558 (682)
                      .+|..++.++.
T Consensus       180 ~ip~~~~~l~~  190 (208)
T 2o6s_A          180 VVRNSAGSVAP  190 (208)
T ss_dssp             TBBCTTSSBCT
T ss_pred             eeeccCccccC
Confidence            77766665544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.1e-19  Score=186.36  Aligned_cols=180  Identities=28%  Similarity=0.255  Sum_probs=137.7

Q ss_pred             CEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCC-CCCCccEEECCCCcCcccCCccccCCCCCCEEecc
Q 045291          390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN  468 (682)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  468 (682)
                      +.++++++.+. .+|..+   ...++.|++++|++++..+..+. .+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            46667777665 566543   23567777777777776666666 77888888888888877777778888888888888


Q ss_pred             CCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhc---cCCCCCcEEECCCCcC
Q 045291          469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF---SNLKQIESLDLSYNKL  545 (682)
Q Consensus       469 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~---~~l~~L~~L~l~~n~l  545 (682)
                      +|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|++++ ..+..|   ..+++|+.|+|++|++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCC
Confidence            888876666678888888888888888887778888888888888888888875 444555   5688888899999888


Q ss_pred             CCCchhhhhcCCC--CCEEEccCccCcccCC
Q 045291          546 NGKMPHQLVELKT--LEVFSVAYNNLSGEIP  574 (682)
Q Consensus       546 ~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~  574 (682)
                      +...+..+..++.  ++.|++++|++.|.|.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             CccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            8777777888776  4788999999887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=4.5e-19  Score=167.87  Aligned_cols=153  Identities=24%  Similarity=0.310  Sum_probs=117.4

Q ss_pred             CEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccC
Q 045291          390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN  469 (682)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  469 (682)
                      +.++++++.+. .+|..+   .++++.|++++|++++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            56777777776 666543   25778888888888777777777788888888888888777777788888888888888


Q ss_pred             CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291          470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  547 (682)
                      |.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++ ..+..|..+++|+.|++++|++..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcCC
Confidence            88876666667778888888888888887777778888888888888888875 556667778888888888887753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=171.88  Aligned_cols=157  Identities=19%  Similarity=0.188  Sum_probs=141.5

Q ss_pred             CCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCC
Q 045291          414 LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMP  492 (682)
Q Consensus       414 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  492 (682)
                      -+.+++++|.++.. |..+  .+.+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus        13 ~~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            35899999999865 3333  3567999999999997744 568899999999999999998888899999999999999


Q ss_pred             CCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCccc
Q 045291          493 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGE  572 (682)
Q Consensus       493 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  572 (682)
                      +|.+++..+..|..+++|++|+|++|++++ ..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++.|.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999999999999999999999999999997 6789999999999999999999998899999999999999999999998


Q ss_pred             CC
Q 045291          573 IP  574 (682)
Q Consensus       573 ~~  574 (682)
                      ++
T Consensus       169 c~  170 (220)
T 2v70_A          169 CY  170 (220)
T ss_dssp             GG
T ss_pred             Cc
Confidence            77

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1.9e-19  Score=184.64  Aligned_cols=181  Identities=20%  Similarity=0.190  Sum_probs=155.7

Q ss_pred             CCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCcccc-CCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCC
Q 045291          414 LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS-KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMP  492 (682)
Q Consensus       414 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  492 (682)
                      -+.+++++++++... ..+  .+.++.|++++|.+.+..+..+. ++++|++|++++|.+.+..+..|..+++|++|+|+
T Consensus        20 ~~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            368999999988644 333  35689999999999988888887 99999999999999998888889999999999999


Q ss_pred             CCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh---hcCCCCCEEEccCccC
Q 045291          493 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL---VELKTLEVFSVAYNNL  569 (682)
Q Consensus       493 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l  569 (682)
                      +|++++..+..|..+++|+.|+|++|++++ ..+..|..+++|+.|+|++|+++...+..+   ..+++|+.|++++|++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            999998888899999999999999999986 668899999999999999999997666655   5699999999999999


Q ss_pred             cccCCcccccccc--cCcccccCCCCCCCCC
Q 045291          570 SGEIPEWTAQFAT--FNESSYEGNIFLCGLP  598 (682)
Q Consensus       570 ~~~~~~~~~~~~~--l~~~~~~~n~~~c~~~  598 (682)
                      +...+..+..+..  ++.+++.+|||.|+|.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             CccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            9544444555555  3788999999999985

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=5.7e-19  Score=167.16  Aligned_cols=155  Identities=22%  Similarity=0.309  Sum_probs=127.0

Q ss_pred             CEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEecc
Q 045291          390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN  468 (682)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  468 (682)
                      +++++++|.+. .+|..+   ...+++|++++|++++..+ ..|..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            57888888887 677644   3457888888888887644 456788888888888888887777788888888888888


Q ss_pred             CCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCC
Q 045291          469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK  548 (682)
Q Consensus       469 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  548 (682)
                      +|.+.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++ ..|..|..+++|+.|++++|++...
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCcCC
Confidence            888887777788888888888888888888888888888888888888888886 5678888888888888888888754


Q ss_pred             c
Q 045291          549 M  549 (682)
Q Consensus       549 ~  549 (682)
                      .
T Consensus       169 c  169 (220)
T 2v70_A          169 C  169 (220)
T ss_dssp             G
T ss_pred             C
Confidence            3

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=4.8e-19  Score=189.99  Aligned_cols=186  Identities=26%  Similarity=0.382  Sum_probs=89.0

Q ss_pred             CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEE
Q 045291          339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA  418 (682)
Q Consensus       339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  418 (682)
                      +++.|++++|.+++ +|..+   +++|+.|++++|.++ .+|   ..+++|++|++++|.++ .+|. +. .  +|+.|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~-~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP-A--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC-T--TCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh-c--CCCEEE
Confidence            45566666665553 44433   245556666665555 233   23455555555555555 2444 21 1  555555


Q ss_pred             ccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcC
Q 045291          419 LSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG  498 (682)
Q Consensus       419 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  498 (682)
                      +++|++++.. .   .+++|+.|++++|.+.+ +|.   .+++|++|++++|.+++ +|. +.  ++|++|+|++|.|+.
T Consensus       127 Ls~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          127 VDNNQLTMLP-E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS
T ss_pred             CCCCcCCCCC-C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc
Confidence            5555555422 2   34555555555555543 222   34455555555555543 333 32  455555555555552


Q ss_pred             CcchhccCCCCC-------CEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhc
Q 045291          499 PIPVEFCQLDLL-------QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE  555 (682)
Q Consensus       499 ~~~~~~~~l~~L-------~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  555 (682)
                       +|. +..  +|       +.|+|++|+++.  +|..+..+++|+.|++++|++++.+|..+..
T Consensus       195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          195 -LPA-VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             -CCC-CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             -hhh-HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence             222 322  34       555555555542  3333334555555555555555444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2e-18  Score=164.63  Aligned_cols=157  Identities=20%  Similarity=0.180  Sum_probs=128.4

Q ss_pred             CCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCC
Q 045291          414 LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN  493 (682)
Q Consensus       414 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  493 (682)
                      -+.++.++++++.... .+  .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            3455666655554332 22  36788888888888877777788888888888888888766667778889999999999


Q ss_pred             CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccC
Q 045291          494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI  573 (682)
Q Consensus       494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  573 (682)
                      |++++..+..|..+++|+.|+|++|+++.  +|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99988888888999999999999999984  6788899999999999999999877788889999999999999999987


Q ss_pred             Cc
Q 045291          574 PE  575 (682)
Q Consensus       574 ~~  575 (682)
                      +.
T Consensus       176 ~~  177 (229)
T 3e6j_A          176 RD  177 (229)
T ss_dssp             GG
T ss_pred             ch
Confidence            64

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=5.2e-18  Score=168.07  Aligned_cols=171  Identities=26%  Similarity=0.371  Sum_probs=122.1

Q ss_pred             CCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCE
Q 045291          385 NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEG  464 (682)
Q Consensus       385 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  464 (682)
                      .+++|++|++++|.+. .++.  +..+++|+.|++++|++++..+  +..+++|++|++++|.+.+.  ..+..+++|++
T Consensus        44 ~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  116 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (291)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             hcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence            4455566666665554 3332  2345666666666666665443  55667777777777776642  23677778888


Q ss_pred             EeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCc
Q 045291          465 LYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK  544 (682)
Q Consensus       465 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~  544 (682)
                      |++++|.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++ ..+  +..+++|+.|++++|+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCc
Confidence            88888887743  3577788888888888888765  567888889999999998886 333  8888999999999998


Q ss_pred             CCCCchhhhhcCCCCCEEEccCccCcc
Q 045291          545 LNGKMPHQLVELKTLEVFSVAYNNLSG  571 (682)
Q Consensus       545 l~~~~~~~l~~l~~L~~L~l~~n~l~~  571 (682)
                      ++.. + .+..+++|+.|++++|+++.
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCC-h-hhccCCCCCEEECcCCcccC
Confidence            8854 4 37888999999999998875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=3.8e-18  Score=162.67  Aligned_cols=157  Identities=20%  Similarity=0.300  Sum_probs=141.2

Q ss_pred             CccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEcc
Q 045291          437 NLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS  516 (682)
Q Consensus       437 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  516 (682)
                      .-+.++.+++.+. .+|..+  .++|++|++++|.+.+..|..|..+++|++|+|++|+++...+..|..+++|+.|+|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3577999998887 455444  3899999999999998889999999999999999999998888889999999999999


Q ss_pred             CCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCC
Q 045291          517 DNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCG  596 (682)
Q Consensus       517 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~  596 (682)
                      +|++++ ..+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+.+++.+++.+||+.|+
T Consensus        97 ~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           97 TNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCcCCc-cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999996 66778899999999999999999 6788889999999999999999976666688899999999999999999


Q ss_pred             CC
Q 045291          597 LP  598 (682)
Q Consensus       597 ~~  598 (682)
                      |+
T Consensus       175 c~  176 (229)
T 3e6j_A          175 CR  176 (229)
T ss_dssp             BG
T ss_pred             cc
Confidence            86

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=4.4e-18  Score=182.56  Aligned_cols=184  Identities=22%  Similarity=0.320  Sum_probs=87.6

Q ss_pred             CceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEEC
Q 045291          364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLL  443 (682)
Q Consensus       364 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  443 (682)
                      +++.|++++|.+++ +|..+  .++|++|++++|.+. .+|    ..+++|+.|++++|++++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            45555555555554 23222  244555555555554 444    124555555555555554 222 322  5555555


Q ss_pred             CCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC
Q 045291          444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  523 (682)
Q Consensus       444 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  523 (682)
                      ++|.+.+ +|.   .+++|+.|++++|.+++ +|.   .+++|++|+|++|.+++ +|. |.  ++|+.|+|++|+++. 
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-
Confidence            5555554 232   34555555555555553 332   34555555555555554 222 33  455555555555542 


Q ss_pred             cchhhccCCCCC-------cEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccc
Q 045291          524 LIPSTFSNLKQI-------ESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWT  577 (682)
Q Consensus       524 ~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  577 (682)
                       +|. +..  +|       +.|++++|+|+ .+|..+..+++|+.|++++|++++.+|..+
T Consensus       195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          195 -LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             -CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             -hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence             333 322  44       55555555555 234444445555555555555555444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7.6e-18  Score=166.89  Aligned_cols=170  Identities=28%  Similarity=0.345  Sum_probs=125.7

Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  441 (682)
                      +++|+.|++++|.+... + .+..+++|++|++++|++. .++.  +..+++|+.|++++|++++.  ..+..+++|++|
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            55667777777766643 2 3566677777777777776 3443  34677777777777777653  236677888888


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291          442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  521 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  521 (682)
                      ++++|.+.+.  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|+++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            8888887753  4577788888888888888754  467888888888888888887655  788889999999999887


Q ss_pred             CCcchhhccCCCCCcEEECCCCcCCC
Q 045291          522 GRLIPSTFSNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       522 ~~~~~~~~~~l~~L~~L~l~~n~l~~  547 (682)
                      +  .+ .+..+++|+.|++++|++..
T Consensus       192 ~--l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          192 D--LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             B--CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             C--Ch-hhccCCCCCEEECcCCcccC
Confidence            5  33 47888899999999998875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=2.6e-17  Score=178.70  Aligned_cols=189  Identities=25%  Similarity=0.304  Sum_probs=113.1

Q ss_pred             ccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEc
Q 045291          340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL  419 (682)
Q Consensus       340 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  419 (682)
                      +..+.+..+.+.+..+.   ..+++|+.|++++|.+... + .+..+++|++|+|++|.+. .++.  +..+++|+.|++
T Consensus        23 l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEEC
T ss_pred             HHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEEC
Confidence            33445555555433332   2256777777777776643 2 4666777777777777776 3443  345677777777


Q ss_pred             cCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCC
Q 045291          420 SNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGP  499 (682)
Q Consensus       420 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  499 (682)
                      ++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.
T Consensus        95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             cCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            77766653  2455666666666666666542  3455666666666666666543  3456666666666666666655


Q ss_pred             cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291          500 IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       500 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  547 (682)
                      .|  +..+++|+.|+|++|++++  + ..+..+++|+.|+|++|++..
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISD--L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCB--C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             hh--hccCCCCCEEECcCCCCCC--C-hHHccCCCCCEEEccCCcCcC
Confidence            44  5566666666666666653  2 235566666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=4e-17  Score=177.29  Aligned_cols=189  Identities=23%  Similarity=0.325  Sum_probs=149.7

Q ss_pred             CcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEcc
Q 045291          316 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLS  395 (682)
Q Consensus       316 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  395 (682)
                      +..+.+..+.+.+..  .+..++.|+.|++++|.+. .++ .+ ..+++|+.|+|++|.+.+..+  +..+++|+.|+++
T Consensus        23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GI-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCT-TG-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CCh-HH-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            334455555555432  2345778899999999887 454 33 348899999999999886654  7889999999999


Q ss_pred             CCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCC
Q 045291          396 NNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGK  475 (682)
Q Consensus       396 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  475 (682)
                      +|.+. .++  .+..+++|+.|++++|++.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.
T Consensus        96 ~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           96 ENKIK-DLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             SSCCC-CCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CCCCC-CCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            99887 555  234788999999999998864  4577889999999999998865  6788899999999999999876


Q ss_pred             chhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCC
Q 045291          476 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  522 (682)
Q Consensus       476 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~  522 (682)
                      .|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            66  88899999999999999865  358889999999999998875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.4e-17  Score=152.31  Aligned_cols=152  Identities=18%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             CCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCC
Q 045291          384 GNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLE  463 (682)
Q Consensus       384 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  463 (682)
                      ..+++|++|++++|.+. .++ . +..+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34566677777777665 555 2 23466666666666644322  2344455555555555555544444455555555


Q ss_pred             EEeccCCcCCCCchhhhcCCCCCCeecCCCCc-CcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCC
Q 045291          464 GLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH-LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY  542 (682)
Q Consensus       464 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~  542 (682)
                      +|++++|.+.+..+..+..+++|++|++++|. +++. + .+..+++|+.|++++|++++  .+ .+..+++|+.|++++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECB
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeC
Confidence            55555555544444444444444444444444 3322 1 23444444444444444432  11 333344444444444


Q ss_pred             CcC
Q 045291          543 NKL  545 (682)
Q Consensus       543 n~l  545 (682)
                      |++
T Consensus       191 N~i  193 (197)
T 4ezg_A          191 QTI  193 (197)
T ss_dssp             C--
T ss_pred             ccc
Confidence            433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=2.5e-17  Score=152.28  Aligned_cols=132  Identities=25%  Similarity=0.361  Sum_probs=100.7

Q ss_pred             cEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchh-hhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccC
Q 045291          439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD  517 (682)
Q Consensus       439 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  517 (682)
                      ++++++++.+. .+|..+.  .+|++|++++|.+.+..+. .+..+++|++|+|++|.+++..|..|.++++|+.|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56677777665 3444332  3777777777777755543 477788888888888888877778888888888888888


Q ss_pred             CcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       518 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      |++++ ..+..|.++++|+.|++++|++++..|..+..+++|+.|++++|++.|.++
T Consensus        88 N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88875 566678888888888888888888778888888888888888888888766

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=6.4e-17  Score=150.42  Aligned_cols=150  Identities=18%  Similarity=0.226  Sum_probs=70.7

Q ss_pred             CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeec
Q 045291          411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII  490 (682)
Q Consensus       411 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  490 (682)
                      +++|+.|++++|.+....  .+..+++|++|++++|.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344555555555544221  34444555555555553321  22444455555555555555443444445555555555


Q ss_pred             CCCCcCcCCcchhccCCCCCCEEEccCCc-CCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccC
Q 045291          491 MPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL  569 (682)
Q Consensus       491 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  569 (682)
                      +++|.+++..+..+..+++|+.|++++|+ ++.  ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence            55555554444445555555555555554 432  22 344455555555555555432 1 344455555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.3e-17  Score=160.65  Aligned_cols=148  Identities=26%  Similarity=0.332  Sum_probs=91.4

Q ss_pred             CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeec
Q 045291          411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII  490 (682)
Q Consensus       411 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  490 (682)
                      +++|+.|++++|+++...  .+..+++|++|++++|.+.+..+  +..+++|++|++++|++.+ ++. +.. ++|++|+
T Consensus        40 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~  112 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLF  112 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEE
T ss_pred             cCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEE
Confidence            444444444444444321  33345555555555555553322  5555666666666666553 222 222 6677777


Q ss_pred             CCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCc
Q 045291          491 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS  570 (682)
Q Consensus       491 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  570 (682)
                      +++|++++.  ..+..+++|+.|++++|++++  .+ .+..+++|+.|++++|++++.  ..+..+++|+.|++++|+++
T Consensus       113 L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          113 LDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             ccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            777777654  246777788888888888775  33 577788888888888888765  55777888888888888887


Q ss_pred             cc
Q 045291          571 GE  572 (682)
Q Consensus       571 ~~  572 (682)
                      +.
T Consensus       186 ~~  187 (263)
T 1xeu_A          186 NE  187 (263)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=6.6e-17  Score=149.31  Aligned_cols=167  Identities=20%  Similarity=0.315  Sum_probs=132.3

Q ss_pred             cEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCC
Q 045291          439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN  518 (682)
Q Consensus       439 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  518 (682)
                      +.++++++.+.. +|..+  .++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            678999999884 55544  368999999999998 67789999999999999999999998899999999999999999


Q ss_pred             cCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          519 NISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       519 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      ++++ ..+..|.++++|+.|+|++|+++...+..+..+++|+.|++++|++.|.+.-  ..+..+...... .     ..
T Consensus        89 ~l~~-i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l--~~l~~~~~~~~~-~-----~~  159 (193)
T 2wfh_A           89 RLRC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM--QWLSDWVKSEYK-E-----PG  159 (193)
T ss_dssp             CCCB-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG--HHHHHHHHHSSC-C-----CS
T ss_pred             ccCE-eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC--HHHHHHHHhccC-C-----CC
Confidence            9986 6778899999999999999999977777899999999999999999987652  222222111110 0     11


Q ss_pred             CCCCCCCCCCCCCCCCCCCC
Q 045291          599 LPICISPATMPEASIGNEQD  618 (682)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~  618 (682)
                      ...|.+|...++......+.
T Consensus       160 ~~~C~~P~~l~g~~l~~~~~  179 (193)
T 2wfh_A          160 IARCAGPGEMADKLLLTTPS  179 (193)
T ss_dssp             CCBEEESGGGTTCBTTTSCG
T ss_pred             CcCcCCchHHCCCCcccCCh
Confidence            23567777777765544443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.7e-16  Score=146.61  Aligned_cols=174  Identities=21%  Similarity=0.236  Sum_probs=110.6

Q ss_pred             CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCc-cccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCC
Q 045291          415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN  493 (682)
Q Consensus       415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  493 (682)
                      +.+++++|+++... ..+  ..++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            45555555554322 222  12666777777766655443 466777777777777777766677777777888888888


Q ss_pred             CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchh-hhhcCCCCCEEEccCccCccc
Q 045291          494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH-QLVELKTLEVFSVAYNNLSGE  572 (682)
Q Consensus       494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~  572 (682)
                      |++++..+..|.++++|+.|+|++|++++ ..|..|..+++|+.|++++|++....+- .+..  .++...+.++...|.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~  164 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG  164 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCC
Confidence            88877777777888888888888888876 5677788888888888888888755431 1111  122223445555665


Q ss_pred             CCcccccccccCcccccCCCCCCCC
Q 045291          573 IPEWTAQFATFNESSYEGNIFLCGL  597 (682)
Q Consensus       573 ~~~~~~~~~~l~~~~~~~n~~~c~~  597 (682)
                      .|..   +......++..+.+.|..
T Consensus       165 ~P~~---l~~~~l~~l~~~~~~C~~  186 (192)
T 1w8a_A          165 APSK---VRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             SSTT---TTTSBGGGSCTTTCCCCC
T ss_pred             CChH---HcCCChhhCcHhhcCcCC
Confidence            5542   233334455566666643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=2.8e-17  Score=166.33  Aligned_cols=284  Identities=12%  Similarity=0.053  Sum_probs=131.3

Q ss_pred             CCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCc--ccCCCCCCCCCCccEEEccCCcCCCCCChhhhhc----
Q 045291          288 QHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG--GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI----  361 (682)
Q Consensus       288 ~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~----  361 (682)
                      +.+++.|.++++ +...-...+...+++|+.|+|++|++.  ......   ++.++.+.+..+    .+|...+..    
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccc
Confidence            345677777653 111111222222677777777777766  221111   122334444444    334444555    


Q ss_pred             ----CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCc----CCCcccccCC
Q 045291          362 ----LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN----LQGHMFSRNF  433 (682)
Q Consensus       362 ----l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~  433 (682)
                          +++|+++++.+ .++.+.+.+|.++++|+++++++|.+. .++..+|.++.++..+....+.    ........|.
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                67777777776 666566667777777777777777665 6666666666655555544421    1122223333


Q ss_pred             CCCCcc-EEECCCCcCcc-cCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCC
Q 045291          434 NLTNLK-WLLLEGNRFVG-EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ  511 (682)
Q Consensus       434 ~l~~L~-~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  511 (682)
                      ++..|+ .+.+....... ..........++..+.+.++-...........+++|+.++|++|+++.+.+.+|.++++|+
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            444444 33332211000 0000000122333333333211101111111245555555555555544444555555555


Q ss_pred             EEEccCCcCCCCcchhhccCCCCCc-EEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccC
Q 045291          512 ILDISDNNISGRLIPSTFSNLKQIE-SLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN  584 (682)
Q Consensus       512 ~L~Ls~n~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~  584 (682)
                      .+++.+| ++. +.+.+|.++++|+ .+++.+ .++.+.+..|.++++|+.+++++|.++..-+..+..+.+++
T Consensus       254 ~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          254 KIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             EEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             EEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence            5555554 332 3344555555555 555554 44434444555555555555555555443333344344433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=1.3e-15  Score=157.02  Aligned_cols=266  Identities=12%  Similarity=0.103  Sum_probs=199.3

Q ss_pred             CCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceE
Q 045291          288 QHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS  367 (682)
Q Consensus       288 ~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  367 (682)
                      +..++.+.+... +. .++...|.++ +|+.+.+.++ +..+...+|.++ +|+.+.+.. .+. .++...+..+++|+.
T Consensus       112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            356666666653 33 3444446664 6888888765 666767777774 688888875 454 455555556888888


Q ss_pred             EEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc
Q 045291          368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR  447 (682)
Q Consensus       368 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  447 (682)
                      +++.+|.++.+....|. ..+|+.+.+..+ +. .++..+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+.+ .
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~  258 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G  258 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence            88888888877677776 578888888754 55 778888888888998888864 56566667766 6888888854 4


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCC-----CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCC
Q 045291          448 FVGEIPQSLSKCSSLEGLYLNNNSLS-----GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  522 (682)
Q Consensus       448 ~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~  522 (682)
                      +..+...+|.+|++|+.+++.+|.+.     ...+.+|.++++|+.+.|. +.++.+...+|.++++|+.++|..+ ++.
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            56567788889999999998887654     3556788889999999998 4577777788999999999999665 553


Q ss_pred             CcchhhccCCCCCcEEECCCCcCCCCchhhhhcCC-CCCEEEccCccCc
Q 045291          523 RLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK-TLEVFSVAYNNLS  570 (682)
Q Consensus       523 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~  570 (682)
                       +...+|.++ +|+++++.+|.+....+..|.+++ .++.+++..+.+.
T Consensus       337 -I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          337 -INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             -ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             -EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence             567889998 899999999988877777777774 7888888887654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=7.6e-17  Score=157.00  Aligned_cols=167  Identities=23%  Similarity=0.296  Sum_probs=93.4

Q ss_pred             ceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECC
Q 045291          365 LFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLE  444 (682)
Q Consensus       365 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  444 (682)
                      +..++++++.+++..  .+..+++|++|++++|.+. .++ . +..+++|+.|++++|++++..+  +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            444444555444322  3444555555555555554 343 1 2245555555555555554433  4555666666666


Q ss_pred             CCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCc
Q 045291          445 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL  524 (682)
Q Consensus       445 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~  524 (682)
                      +|.+.+. +. +.. ++|++|++++|.+++. + .+..+++|++|++++|++++..  .+..+++|+.|++++|++++ .
T Consensus        94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~-~  165 (263)
T 1xeu_A           94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN-T  165 (263)
T ss_dssp             SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB-C
T ss_pred             CCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc-h
Confidence            6655542 21 112 5666666666666532 2 3666666666666666666542  46666777777777777764 2


Q ss_pred             chhhccCCCCCcEEECCCCcCCCC
Q 045291          525 IPSTFSNLKQIESLDLSYNKLNGK  548 (682)
Q Consensus       525 ~~~~~~~l~~L~~L~l~~n~l~~~  548 (682)
                        ..+..+++|+.|++++|++...
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              5566677777777777766643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=9.9e-17  Score=162.25  Aligned_cols=264  Identities=14%  Similarity=0.100  Sum_probs=172.8

Q ss_pred             CCCCcEEEcCCCCCcccCCCCCCC-CCCccEEEccCCcCC--CCCChhhhhcCCCceEEEecCCcCCcCCCcccCC----
Q 045291          313 NAKLETLFLINDSIGGPFRLPIHP-HRRLRFLDVSNNNFQ--GHMPVEIGDILPSLFSFNISTNALHGSIPSSFGN----  385 (682)
Q Consensus       313 ~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----  385 (682)
                      ..+++.|.++++ +.......+.. +++|+.|||++|++.  ...+.    .++.+..+.+..+.   +.+.+|.+    
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~----~~~~~~~~~~~~~~---I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG----TYPNGKFYIYMANF---VPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS----SSGGGCCEEECTTE---ECTTTTEEEETT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc----cccccccccccccc---cCHHHhcccccc
Confidence            345677777643 11100011111 567888888888775  11111    12223444444443   33456666    


Q ss_pred             ----CCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc----CcccCCcccc
Q 045291          386 ----MKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR----FVGEIPQSLS  457 (682)
Q Consensus       386 ----l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----~~~~~~~~~~  457 (682)
                          +++|+++++.+ .+. .++..+|.+|++|+.|++.+|.+..+.+..|.++.++..+....+.    .......+|.
T Consensus        96 ~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                88888888888 776 7888888888888888888888887777788777777777665532    2223445666


Q ss_pred             CCCCCC-EEeccCCcCCCCchhhhc----CCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCC
Q 045291          458 KCSSLE-GLYLNNNSLSGKIPRWLG----NLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNL  532 (682)
Q Consensus       458 ~l~~L~-~L~l~~n~~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l  532 (682)
                      ++.+|+ .+.+....   .++..+.    ...+++.+.+.++-...........+++|+.++|++|+++. +.+.+|.++
T Consensus       174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~  249 (329)
T 3sb4_A          174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQK  249 (329)
T ss_dssp             ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTC
T ss_pred             cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCC
Confidence            777777 55554432   2232221    24566666666542221111112247899999999999985 677899999


Q ss_pred             CCCcEEECCCCcCCCCchhhhhcCCCCC-EEEccCccCcccCCcccccccccCcccccCCC
Q 045291          533 KQIESLDLSYNKLNGKMPHQLVELKTLE-VFSVAYNNLSGEIPEWTAQFATFNESSYEGNI  592 (682)
Q Consensus       533 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~  592 (682)
                      ++|+++++.+| +..+.+..|.++++|+ .+++.+ .++..-+..+..+..++.+++.+|.
T Consensus       250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred             CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence            99999999998 8777778999999999 999999 7776666778888889888886664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=5.9e-16  Score=142.88  Aligned_cols=127  Identities=28%  Similarity=0.365  Sum_probs=68.4

Q ss_pred             CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCC
Q 045291          415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN  494 (682)
Q Consensus       415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  494 (682)
                      +.+++++|+++... ..+  .++|++|++++|.+. .+|..|.++++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-KGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCC-SCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCC-CCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34555555555332 211  235555555555554 34455555555555555555555555555555555555555555


Q ss_pred             cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291          495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      .+++..+..|.++++|+.|+|++|+++. ..+..|..+++|+.|++++|++.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence            5555555555555555555555555553 33444555555555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=3.6e-19  Score=192.19  Aligned_cols=202  Identities=17%  Similarity=0.155  Sum_probs=95.9

Q ss_pred             CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCc-------------CCcCCCcccCCCCCCCEEE-ccCCcCCC
Q 045291          336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNA-------------LHGSIPSSFGNMKFLQILD-LSNNHLTG  401 (682)
Q Consensus       336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~-l~~n~~~~  401 (682)
                      ..++|+.|++++|.+. .+|..+.. +++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+. 
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             cCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            3556666666666665 56666554 5666666665443             2222333333344444443 3333221 


Q ss_pred             cCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhc
Q 045291          402 EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG  481 (682)
Q Consensus       402 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  481 (682)
                      .+           +.+.+++|.+....+      ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.
T Consensus       424 ~L-----------~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          424 DL-----------RSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             HH-----------HHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred             hh-----------hhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence            11           111122222221111      124555555555553 233 555555555555555555 4444555


Q ss_pred             CCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcc-hhhccCCCCCcEEECCCCcCCCCchh---hhhcCC
Q 045291          482 NLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI-PSTFSNLKQIESLDLSYNKLNGKMPH---QLVELK  557 (682)
Q Consensus       482 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~  557 (682)
                      .+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++ .. |..+..+++|+.|++++|++++.+|.   .+..++
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp  560 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP  560 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence            55555555555555554 23 45555555555555555554 22 45555555555555555555543331   122345


Q ss_pred             CCCEEE
Q 045291          558 TLEVFS  563 (682)
Q Consensus       558 ~L~~L~  563 (682)
                      +|+.|+
T Consensus       561 ~L~~L~  566 (567)
T 1dce_A          561 SVSSIL  566 (567)
T ss_dssp             TCSEEE
T ss_pred             ccCccC
Confidence            555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=6.4e-16  Score=139.65  Aligned_cols=133  Identities=20%  Similarity=0.178  Sum_probs=84.7

Q ss_pred             CCccEEECCCCcCc-ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEE
Q 045291          436 TNLKWLLLEGNRFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD  514 (682)
Q Consensus       436 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  514 (682)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666666666655 34455556666666666666666543  4556666666666666666665666666667777777


Q ss_pred             ccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch---hhhhcCCCCCEEEccCccCc
Q 045291          515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP---HQLVELKTLEVFSVAYNNLS  570 (682)
Q Consensus       515 Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~  570 (682)
                      +++|++++...+..+..+++|+.|++++|++++..+   ..+..+++|+.|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            777777641122566677777777777777765544   45666777777777777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=9.3e-15  Score=151.70  Aligned_cols=237  Identities=15%  Similarity=0.103  Sum_probs=135.1

Q ss_pred             ccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCC
Q 045291          284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILP  363 (682)
Q Consensus       284 ~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  363 (682)
                      .|..+++|+.+.+..+..  .+++..|.++.+|+.+.+..+ +..+...+|..+..|+.+.+..+...  +....+. ..
T Consensus       157 aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~  230 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KT  230 (394)
T ss_dssp             TTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TC
T ss_pred             hhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cC
Confidence            355666677777655432  344445667777777776554 44455566666777776666554321  2222222 45


Q ss_pred             CceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEEC
Q 045291          364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLL  443 (682)
Q Consensus       364 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  443 (682)
                      +|+.+.+... ++......|.++..++.+.+..+..  .+....|..+..++.+......+.   ...|..+.+|+.+.+
T Consensus       231 ~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          231 GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL  304 (394)
T ss_dssp             CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred             CCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---ccccccccccccccc
Confidence            6777766543 2334445666777777777765532  445555556667776666554322   234556666777766


Q ss_pred             CCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC
Q 045291          444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  523 (682)
Q Consensus       444 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  523 (682)
                      .++ +..+...+|.++++|+.+++.++ ++.....+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++  
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~--  378 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE--  378 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG--
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE--
Confidence            554 44445566666777777766543 44344456666666666666554 55455566666666666666544 22  


Q ss_pred             cchhhccCCCCCcEE
Q 045291          524 LIPSTFSNLKQIESL  538 (682)
Q Consensus       524 ~~~~~~~~l~~L~~L  538 (682)
                      ....+|.++++|+.+
T Consensus       379 ~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          379 QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGGGBCTTCEEEEE
T ss_pred             EhhheecCCCCCcEE
Confidence            234456666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=3.8e-15  Score=153.60  Aligned_cols=248  Identities=11%  Similarity=0.127  Sum_probs=203.5

Q ss_pred             cccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcC
Q 045291          283 KFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDIL  362 (682)
Q Consensus       283 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l  362 (682)
                      ..|..+ +|+.+.+..+ +. .++...|.++ +|+.+.+.+ .+..+...+|.++.+|+.+++.+|.++ .++...+. +
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~  202 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-Y  202 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-T
T ss_pred             hhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-e
Confidence            344454 6899998776 44 4555556664 699999986 777788889999999999999999987 67776666 6


Q ss_pred             CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEE
Q 045291          363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLL  442 (682)
Q Consensus       363 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  442 (682)
                      .+|+.+.+..+ ++.+...+|.++++|+.+++..+ +. .++..+|.+ .+|+.+.+ .+.++.+...+|.++++|+.++
T Consensus       203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred             cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence            89999999855 77677789999999999999875 54 788888876 79999999 4567777788999999999999


Q ss_pred             CCCCcCc-----ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccC
Q 045291          443 LEGNRFV-----GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD  517 (682)
Q Consensus       443 l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  517 (682)
                      +.++.+.     .+.+.+|.+|++|+.+++.+ .+......+|.++++|+.+.|..+ ++.+...+|.++ +|+.+++++
T Consensus       278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred             eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence            9887764     46678999999999999994 577677788999999999999665 776778899999 999999999


Q ss_pred             CcCCCCcchhhccCCC-CCcEEECCCCcCC
Q 045291          518 NNISGRLIPSTFSNLK-QIESLDLSYNKLN  546 (682)
Q Consensus       518 n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~  546 (682)
                      |.+.. ..+..|.+++ +++.|++..+.+.
T Consensus       355 n~~~~-l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          355 TTPPQ-VFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SSCCB-CCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCCcc-cccccccCCCCCccEEEeCHHHHH
Confidence            98875 5678888885 7889998877544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=7.9e-16  Score=135.96  Aligned_cols=128  Identities=22%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             CCccEEECCCCcCc-ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEE
Q 045291          436 TNLKWLLLEGNRFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD  514 (682)
Q Consensus       436 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  514 (682)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666665 44555556666666666666666544  4556666666666666666655666666667777777


Q ss_pred             ccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch---hhhhcCCCCCEEEcc
Q 045291          515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP---HQLVELKTLEVFSVA  565 (682)
Q Consensus       515 Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~  565 (682)
                      +++|++++...+..+..+++|++|++++|++++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777776641123566677777777777777765544   456667777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=9.2e-17  Score=179.08  Aligned_cols=180  Identities=25%  Similarity=0.331  Sum_probs=84.2

Q ss_pred             CCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccC
Q 045291          379 IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK  458 (682)
Q Consensus       379 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  458 (682)
                      .+..|..++.|++|+|++|.+. .++..++ .+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..+.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            3455666666666666666665 5665555 5666666666666666 44555566666666666666666 44666666


Q ss_pred             CCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCC-CCEEEccCCcCCCCcchhhccCCCCCcE
Q 045291          459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL-LQILDISDNNISGRLIPSTFSNLKQIES  537 (682)
Q Consensus       459 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~~~~~~~~l~~L~~  537 (682)
                      +++|++|+|++|.+. .+|..|..+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++ .+|      ..|+.
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-~~p------~~l~~  363 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI-PLP------HERRF  363 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-CCC------CC---
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC-cCc------cccce
Confidence            666666666666665 44555666666666666666666665555533211 1235566666654 333      23444


Q ss_pred             EECCCC--------cCCCCchhhhhcCCCCCEEEccCccCc
Q 045291          538 LDLSYN--------KLNGKMPHQLVELKTLEVFSVAYNNLS  570 (682)
Q Consensus       538 L~l~~n--------~l~~~~~~~l~~l~~L~~L~l~~n~l~  570 (682)
                      |++++|        .+.+..+..+..+..+....+++|-+.
T Consensus       364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------------------------------------CCC
T ss_pred             eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            555555        233333333444555566666666664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=3.4e-15  Score=136.16  Aligned_cols=134  Identities=22%  Similarity=0.256  Sum_probs=104.4

Q ss_pred             ccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccC
Q 045291          438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD  517 (682)
Q Consensus       438 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  517 (682)
                      .+.++++++.+.. +|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            3566666666653 33322  35778888888888766666677888888888888888877777788888899999999


Q ss_pred             CcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       518 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      |++++ ..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus        86 N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           86 NKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             SCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            98886 5666788888999999999998877666678889999999999999887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.7e-15  Score=136.84  Aligned_cols=134  Identities=22%  Similarity=0.264  Sum_probs=99.8

Q ss_pred             CCCCCEEEccCCcCC-CcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCee
Q 045291          411 CVNLNSLALSNNNLQ-GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI  489 (682)
Q Consensus       411 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  489 (682)
                      .++|++|++++|++. +..+..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356777777777766 44555566677778888877777654  667777888888888888876677777778888888


Q ss_pred             cCCCCcCcCCcc-hhccCCCCCCEEEccCCcCCCCcch---hhccCCCCCcEEECCCCcCCC
Q 045291          490 IMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLIP---STFSNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       490 ~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~  547 (682)
                      ++++|.+++... ..+..+++|+.|++++|++++ ..+   ..+..+++|+.|++++|.+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence            888888876533 677888888888888888875 333   477888888888888888773

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=1.2e-17  Score=180.37  Aligned_cols=109  Identities=24%  Similarity=0.328  Sum_probs=100.2

Q ss_pred             CCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEEC
Q 045291          461 SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDL  540 (682)
Q Consensus       461 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l  540 (682)
                      .|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++  +| .++.+++|+.|+|
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence            58999999999985 565 999999999999999999 678899999999999999999986  56 8999999999999


Q ss_pred             CCCcCCCCc-hhhhhcCCCCCEEEccCccCcccCCc
Q 045291          541 SYNKLNGKM-PHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       541 ~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      ++|++++.. |..+..+++|+.|++++|++++..|.
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            999999887 99999999999999999999976664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=3.9e-15  Score=131.46  Aligned_cols=129  Identities=20%  Similarity=0.241  Sum_probs=102.8

Q ss_pred             CCCCCEEEccCCcCC-CcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCee
Q 045291          411 CVNLNSLALSNNNLQ-GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI  489 (682)
Q Consensus       411 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  489 (682)
                      .++|+.|++++|.++ +..+..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            356777888887776 55666677788888888888888765  677888889999999998887688888888899999


Q ss_pred             cCCCCcCcCC-cchhccCCCCCCEEEccCCcCCCCcch---hhccCCCCCcEEECCC
Q 045291          490 IMPNNHLEGP-IPVEFCQLDLLQILDISDNNISGRLIP---STFSNLKQIESLDLSY  542 (682)
Q Consensus       490 ~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~---~~~~~l~~L~~L~l~~  542 (682)
                      ++++|.+++. .+..+..+++|+.|++++|++++ ..+   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence            9999988864 34778888999999999999875 333   4788889999998864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.57  E-value=9e-14  Score=144.24  Aligned_cols=332  Identities=14%  Similarity=0.079  Sum_probs=158.7

Q ss_pred             ccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc
Q 045291           98 VLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG  177 (682)
Q Consensus        98 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~  177 (682)
                      +... +|.+|++|+.+.+..+ .   ..+....+.+|++|+.+++.++ +..    +...+|.++.+|+.+.+..+ +..
T Consensus        62 Ig~~-AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~-l~~----I~~~aF~~c~~L~~i~~p~~-l~~  130 (394)
T 4fs7_A           62 IGYA-AFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS-VKM----IGRCTFSGCYALKSILLPLM-LKS  130 (394)
T ss_dssp             ECTT-TTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT-CCE----ECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred             hHHH-HhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC-ceE----ccchhhcccccchhhcccCc-eee
Confidence            4433 5777777777777542 1   3344444444677777777543 333    55556677777776655433 333


Q ss_pred             cCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccC
Q 045291          178 SLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSH  257 (682)
Q Consensus       178 ~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  257 (682)
                      ....+|.++..++........   .+...+|..+.+|+.+.+.++..  .++...+..+.+|+.+.+..+-         
T Consensus       131 i~~~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~~---------  196 (394)
T 4fs7_A          131 IGVEAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRNL---------  196 (394)
T ss_dssp             ECTTTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTTC---------
T ss_pred             ecceeeecccccccccCcccc---ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCCc---------
Confidence            444555555433333222222   22244566666666666654432  2333345555555555443321         


Q ss_pred             CCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCC
Q 045291          258 SLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPH  337 (682)
Q Consensus       258 ~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  337 (682)
                                                                  . .+++..+..+..|+.+.+..+...-  ...+...
T Consensus       197 --------------------------------------------~-~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~  229 (394)
T 4fs7_A          197 --------------------------------------------K-IIRDYCFAECILLENMEFPNSLYYL--GDFALSK  229 (394)
T ss_dssp             --------------------------------------------C-EECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTT
T ss_pred             --------------------------------------------e-EeCchhhccccccceeecCCCceEe--ehhhccc
Confidence                                                        1 1222223333333333333221110  1111122


Q ss_pred             CCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEE
Q 045291          338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSL  417 (682)
Q Consensus       338 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  417 (682)
                      ..|+.+.+... ++ .+....+..+..++.+.+..+... .....|..+..++.+....+.    ++...|.++.+|+.+
T Consensus       230 ~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i  302 (394)
T 4fs7_A          230 TGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEV  302 (394)
T ss_dssp             CCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEE
T ss_pred             CCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----ecccccccccccccc
Confidence            34444444322 11 222222233555555555444322 333455555555555554332    333444455566666


Q ss_pred             EccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCc
Q 045291          418 ALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE  497 (682)
Q Consensus       418 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  497 (682)
                      .+..+ +..+...+|.++.+|+.+++.++ +..+...+|.+|++|+.+++..+ +......+|.++++|+.+++..+ ++
T Consensus       303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~  378 (394)
T 4fs7_A          303 KLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE  378 (394)
T ss_dssp             EECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG
T ss_pred             ccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE
Confidence            55433 44444455555666666666533 44344556666666666666554 44344455666666666666443 22


Q ss_pred             CCcchhccCCCCCCEE
Q 045291          498 GPIPVEFCQLDLLQIL  513 (682)
Q Consensus       498 ~~~~~~~~~l~~L~~L  513 (682)
                       ....+|.++++|+.+
T Consensus       379 -~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          379 -QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             -GGGGGBCTTCEEEEE
T ss_pred             -EhhheecCCCCCcEE
Confidence             223456666655543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=3.5e-14  Score=129.38  Aligned_cols=132  Identities=19%  Similarity=0.227  Sum_probs=96.0

Q ss_pred             CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCC
Q 045291          415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN  494 (682)
Q Consensus       415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  494 (682)
                      +.+++++++++.....   ..++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4555555555543321   1356777777777777655666677777888888888777666666777888888888888


Q ss_pred             cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291          495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP  550 (682)
Q Consensus       495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  550 (682)
                      .+++..+..|..+++|+.|++++|++++ ..+..+..+++|++|++++|++.+..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8887777777888888888888888875 555667888888888888888886554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=1.7e-15  Score=168.87  Aligned_cols=188  Identities=23%  Similarity=0.290  Sum_probs=94.6

Q ss_pred             CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCC--------cCchhhhhCCCCCCEEEccCCcCCCcccccCCC
Q 045291          363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG--------EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFN  434 (682)
Q Consensus       363 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~--------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  434 (682)
                      +.++.|++.+|.+... +..     .++.++|+.|.+.+        .++...+..+++|+.|++++|.+... +..+..
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI-SANIFK  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSCC-CGGGGG
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCC-ChhhcC
Confidence            4677788888877653 222     23333444433321        12334444677777777777777643 333446


Q ss_pred             CCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEE
Q 045291          435 LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD  514 (682)
Q Consensus       435 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  514 (682)
                      +++|++|+|++|.+. .+|..|.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence            777777777777777 56677777777777777777777 56777777777777777777776 4455577777777777


Q ss_pred             ccCCcCCCCcchhhccCCC-CCcEEECCCCcCCCCchhhhhcCCCCCEEEccCc
Q 045291          515 ISDNNISGRLIPSTFSNLK-QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN  567 (682)
Q Consensus       515 Ls~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  567 (682)
                      |++|++++ .+|..+..+. .+..+++++|.+++.+|.      .|+.|+++.|
T Consensus       323 L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          323 VEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CCCCccCC-CChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            77777775 5565554432 122366777777766654      3455566665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=2.2e-14  Score=130.54  Aligned_cols=131  Identities=16%  Similarity=0.145  Sum_probs=89.0

Q ss_pred             CCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEE
Q 045291          434 NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL  513 (682)
Q Consensus       434 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  513 (682)
                      .+.+|+.|++++|.+... +......++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..|..+++|+.|
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            456666777777666633 33222233777777777777643  456677777777777777776655556777788888


Q ss_pred             EccCCcCCCCcchh--hccCCCCCcEEECCCCcCCCCchh----hhhcCCCCCEEEccCccCc
Q 045291          514 DISDNNISGRLIPS--TFSNLKQIESLDLSYNKLNGKMPH----QLVELKTLEVFSVAYNNLS  570 (682)
Q Consensus       514 ~Ls~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~  570 (682)
                      ++++|+++.  .|.  .+..+++|+.|++++|++.. .|.    .+..+++|+.||+++|...
T Consensus        94 ~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888887764  444  67777888888888888773 344    3777888888888888765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=3.3e-14  Score=128.19  Aligned_cols=110  Identities=23%  Similarity=0.269  Sum_probs=94.1

Q ss_pred             CCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECC
Q 045291          462 LEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLS  541 (682)
Q Consensus       462 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~  541 (682)
                      .+.+++++|.++ .+|..+  .++|++|+|++|.+++..+..|..+++|+.|+|++|++++ ..+..|..+++|+.|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECC
Confidence            467888888887 455443  3788899999999998888889999999999999999986 677788999999999999


Q ss_pred             CCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          542 YNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       542 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      +|++++..+..+..+++|+.|++++|++.|.+++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            9999988777899999999999999999988764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=7.4e-14  Score=126.96  Aligned_cols=133  Identities=22%  Similarity=0.247  Sum_probs=63.7

Q ss_pred             cCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCC
Q 045291          383 FGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSL  462 (682)
Q Consensus       383 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  462 (682)
                      +..+++|++|++++|.+. .++. +....++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            445556666666666665 4432 222233556666665555543  344455555555555555554333334455555


Q ss_pred             CEEeccCCcCCCCchh--hhcCCCCCCeecCCCCcCcCCcch---hccCCCCCCEEEccCCcC
Q 045291          463 EGLYLNNNSLSGKIPR--WLGNLTRLQYIIMPNNHLEGPIPV---EFCQLDLLQILDISDNNI  520 (682)
Q Consensus       463 ~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~~  520 (682)
                      ++|++++|.+. .+|.  .+..+++|++|++++|.++...+.   .+..+++|+.|++++|.+
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            55555555553 2332  344444444444444444422211   234444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=1e-13  Score=125.32  Aligned_cols=109  Identities=25%  Similarity=0.265  Sum_probs=90.2

Q ss_pred             CEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCC
Q 045291          463 EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY  542 (682)
Q Consensus       463 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~  542 (682)
                      +.+++++|.+. .+|..+.  ++|++|+|++|.+++..|..|..+++|+.|+|++|++++ ..+..|..+++|+.|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCC
Confidence            57788888876 5554443  788888888888888888888899999999999999986 5666788899999999999


Q ss_pred             CcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          543 NKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       543 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      |++++..+..+..+++|+.|++++|++.|.++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            999977777788899999999999999987664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=1e-15  Score=142.38  Aligned_cols=111  Identities=26%  Similarity=0.254  Sum_probs=52.6

Q ss_pred             CCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCC
Q 045291          432 NFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ  511 (682)
Q Consensus       432 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  511 (682)
                      +..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++. | .+..+++|+
T Consensus        44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~  118 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSS
T ss_pred             HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCC
Confidence            3344445555555544443 23 4444455555555555554 3344444445555555555555432 2 344455555


Q ss_pred             EEEccCCcCCCCcch-hhccCCCCCcEEECCCCcCCCC
Q 045291          512 ILDISDNNISGRLIP-STFSNLKQIESLDLSYNKLNGK  548 (682)
Q Consensus       512 ~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~  548 (682)
                      .|++++|++++ ..+ ..+..+++|+.|++++|++.+.
T Consensus       119 ~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          119 VLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccc
Confidence            55555555543 111 2445555555555555555433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=3.1e-15  Score=139.06  Aligned_cols=145  Identities=23%  Similarity=0.246  Sum_probs=116.1

Q ss_pred             CccEEECCCCcCcccCC------ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCC
Q 045291          437 NLKWLLLEGNRFVGEIP------QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL  510 (682)
Q Consensus       437 ~L~~L~l~~n~~~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  510 (682)
                      .++.++++++.+.+..|      ..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            34444444444444433      488899999999999999986 66 7899999999999999999 456677778999


Q ss_pred             CEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch-hhhhcCCCCCEEEccCccCcccCCcc----------ccc
Q 045291          511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP-HQLVELKTLEVFSVAYNNLSGEIPEW----------TAQ  579 (682)
Q Consensus       511 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----------~~~  579 (682)
                      +.|++++|++++  +| .+..+++|+.|++++|+++...+ ..+..+++|+.|++++|++.+.+|..          +..
T Consensus        96 ~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           96 EELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             SEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            999999999986  45 68889999999999999996543 57889999999999999999877652          445


Q ss_pred             ccccCccc
Q 045291          580 FATFNESS  587 (682)
Q Consensus       580 ~~~l~~~~  587 (682)
                      ++.++.++
T Consensus       173 l~~L~~Ld  180 (198)
T 1ds9_A          173 LPNLKKLD  180 (198)
T ss_dssp             CSSCSEEC
T ss_pred             CCCcEEEC
Confidence            56666553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=8e-13  Score=119.08  Aligned_cols=110  Identities=22%  Similarity=0.227  Sum_probs=98.2

Q ss_pred             CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEc
Q 045291          485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV  564 (682)
Q Consensus       485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  564 (682)
                      +.+.+++++|.++.+ |..+  .++|+.|+|++|++++ ..+..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            457899999999964 4444  3789999999999997 67889999999999999999999888888899999999999


Q ss_pred             cCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          565 AYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       565 ~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      ++|+++...+..+..+.+++.+++.+|++.|+|+
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999997777678889999999999999999985

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.40  E-value=3e-11  Score=125.17  Aligned_cols=135  Identities=13%  Similarity=0.179  Sum_probs=71.6

Q ss_pred             CchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcC
Q 045291          403 IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN  482 (682)
Q Consensus       403 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  482 (682)
                      +...+|.++..|+.+.+..+ +..+....|.++++|+.+.+.. .+..+...+|.+|.+|+++++..+ ++.....+|.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            33444555555555555433 2223344555566666666643 334344556666666666666543 43344456666


Q ss_pred             CCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcC
Q 045291          483 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL  545 (682)
Q Consensus       483 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  545 (682)
                      +.+|+.+.|..+ ++.+...+|.++++|+.+++.++...    ...+..+.+|+.+.+..+.+
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC----------
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCCCCE
Confidence            777777776543 55555667777777777777776532    24566667777777665544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=2.3e-12  Score=116.39  Aligned_cols=109  Identities=19%  Similarity=0.204  Sum_probs=96.1

Q ss_pred             CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEcc
Q 045291          486 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVA  565 (682)
Q Consensus       486 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  565 (682)
                      -+.+++++|.++. +|..+.  ++|+.|+|++|++++ ..+..|.++++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus        14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            3689999999984 454443  789999999999997 678899999999999999999998777778899999999999


Q ss_pred             CccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          566 YNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       566 ~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      +|+++...+..+..+++++.+++.+|++.|+|+
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999997666668889999999999999999875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=1.2e-12  Score=133.38  Aligned_cols=102  Identities=25%  Similarity=0.253  Sum_probs=47.0

Q ss_pred             EECCCC-cCcccCCccccCCCCCCEEeccC-CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCC
Q 045291          441 LLLEGN-RFVGEIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN  518 (682)
Q Consensus       441 L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  518 (682)
                      ++.+++ .+.. +|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            344444 4442 333 44445555555543 4444444444444455555555555544444444444445555555555


Q ss_pred             cCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291          519 NISGRLIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       519 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      ++++ ..+..|..++ |+.|+|.+|++.
T Consensus        91 ~l~~-~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALES-LSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence            4443 3333333333 444444444444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.34  E-value=7e-11  Score=122.42  Aligned_cols=137  Identities=12%  Similarity=0.153  Sum_probs=92.5

Q ss_pred             CCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhc
Q 045291          425 QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF  504 (682)
Q Consensus       425 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  504 (682)
                      ..+...+|.++..|+.+.+.++.. .+...+|.++++|+.+.+.. .+......+|.++.+|+.++|..+ ++.+...+|
T Consensus       254 ~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF  330 (394)
T 4gt6_A          254 ARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAF  330 (394)
T ss_dssp             EEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred             eEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence            334456777888888888876543 35667888888888888864 455455677888888888888754 665667788


Q ss_pred             cCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccC
Q 045291          505 CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL  569 (682)
Q Consensus       505 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  569 (682)
                      .++.+|+.+.+..+ ++. +...+|.++++|+++++.++...   ...+.....|+.+.+..+.+
T Consensus       331 ~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          331 AGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             hCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            88888998888654 543 55678888888999888887543   24456667788887776654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=1.5e-13  Score=140.26  Aligned_cols=94  Identities=19%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             CCCCEEeccCCcCCC----CchhhhcCCCCCCeecCCCCcCcCCc----chhccCCCCCCEEEccCCcCCCC---cchhh
Q 045291          460 SSLEGLYLNNNSLSG----KIPRWLGNLTRLQYIIMPNNHLEGPI----PVEFCQLDLLQILDISDNNISGR---LIPST  528 (682)
Q Consensus       460 ~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~---~~~~~  528 (682)
                      ++|++|++++|.+++    .++..+..+++|++|+|++|.+++..    +..+...++|+.|+|++|.++..   .++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            444444444444432    12223344455555555555554321    23344455566666666665421   11223


Q ss_pred             ccCCCCCcEEECCCCcCCCCchhhh
Q 045291          529 FSNLKQIESLDLSYNKLNGKMPHQL  553 (682)
Q Consensus       529 ~~~l~~L~~L~l~~n~l~~~~~~~l  553 (682)
                      +...++|++|+|++|.|+..-...+
T Consensus       235 L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHhCCCCCEEeccCCCCCHHHHHHH
Confidence            3444566666666666654333333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=4.5e-13  Score=136.78  Aligned_cols=161  Identities=18%  Similarity=0.155  Sum_probs=100.8

Q ss_pred             CCCceEEEecCCcCCcCCCcc----cC-CCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccC----
Q 045291          362 LPSLFSFNISTNALHGSIPSS----FG-NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRN----  432 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----  432 (682)
                      ++.|+.|++++|.++......    +. ..++|++|++++|.+.......+...+++|+.|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            457778888888776432222    22 235777888888777543333444445677777887777765433332    


Q ss_pred             -CCCCCccEEECCCCcCccc----CCccccCCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCcCcCCc---
Q 045291          433 -FNLTNLKWLLLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNHLEGPI---  500 (682)
Q Consensus       433 -~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~---  500 (682)
                       ...++|++|++++|.++..    ++..+...++|++|++++|.+.+.    ++..+...++|++|+|++|.|++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2356777777777777542    334446677777777777777542    2445566677777777777776432   


Q ss_pred             -chhccCCCCCCEEEccCCcCCC
Q 045291          501 -PVEFCQLDLLQILDISDNNISG  522 (682)
Q Consensus       501 -~~~~~~l~~L~~L~Ls~n~~~~  522 (682)
                       +..+...++|++|+|++|.|+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence             2334455777777887777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=6.1e-11  Score=120.73  Aligned_cols=132  Identities=19%  Similarity=0.262  Sum_probs=108.8

Q ss_pred             CEEeccCC-cCCCCchhhhcCCCCCCeecCCC-CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEEC
Q 045291          463 EGLYLNNN-SLSGKIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDL  540 (682)
Q Consensus       463 ~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l  540 (682)
                      ..++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|++++ ..+..|.++++|+.|+|
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeC
Confidence            45788888 887 5777 99999999999996 99998888999999999999999999997 77889999999999999


Q ss_pred             CCCcCCCCchhhhhcCCCCCEEEccCccCcccCC-cccccccccCcccccCCCCCCCCC
Q 045291          541 SYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP-EWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       541 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      ++|+|++..+..+..++ |+.|++.+|++.|.+. .|+..+.......+..+.+.|..+
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            99999977777776666 9999999999998776 333333333344455566777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.12  E-value=5.8e-09  Score=107.45  Aligned_cols=145  Identities=12%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             CCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCC
Q 045291          333 PIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCV  412 (682)
Q Consensus       333 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  412 (682)
                      .+..+..++.+.+..+ +. .+....+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++..+|.++.
T Consensus       212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~  286 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS  286 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT
T ss_pred             ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccc
Confidence            3444455555555433 22 223333333566666666554 44444556667777777776543 33 56666666777


Q ss_pred             CCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCC
Q 045291          413 NLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT  484 (682)
Q Consensus       413 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  484 (682)
                      +|+.+.+.++.++.+...+|.++.+|+.+.+..+ +..+...+|.+|++|+++.+..+ ++..-..+|.++.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            7777777766666666667777777777777654 44455667777777777777654 4434445565553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.11  E-value=4.9e-09  Score=108.00  Aligned_cols=79  Identities=8%  Similarity=0.084  Sum_probs=47.8

Q ss_pred             CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291          134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS  213 (682)
Q Consensus       134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~  213 (682)
                      ..+|+.+.+... +..    |...+|.+|.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +. .+...+|.. .+
T Consensus        45 ~~~i~~v~ip~~-vt~----Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~  114 (379)
T 4h09_A           45 RDRISEVRVNSG-ITS----IGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD  114 (379)
T ss_dssp             GGGCSEEEECTT-EEE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred             ccCCEEEEeCCC-ccC----hHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence            567777777542 333    66677888888888888643 554555667766 5666666543 32 343444444 36


Q ss_pred             CcEEecCCC
Q 045291          214 IEMLILSDN  222 (682)
Q Consensus       214 L~~L~L~~n  222 (682)
                      |+.+.+..+
T Consensus       115 L~~i~lp~~  123 (379)
T 4h09_A          115 LDDFEFPGA  123 (379)
T ss_dssp             CSEEECCTT
T ss_pred             cccccCCCc
Confidence            777766544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=7.6e-09  Score=104.41  Aligned_cols=84  Identities=18%  Similarity=0.301  Sum_probs=45.1

Q ss_pred             CCCCCeecCCCCcCcCCcchhc---cCCCCCCEEEccCCcCCCCc---chhhccCCCCCcEEECCCCcCCCCchhhhhc-
Q 045291          483 LTRLQYIIMPNNHLEGPIPVEF---CQLDLLQILDISDNNISGRL---IPSTFSNLKQIESLDLSYNKLNGKMPHQLVE-  555 (682)
Q Consensus       483 l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-  555 (682)
                      +++|++|+|++|.+.+..+..+   ..+++|++|+|+.|.+++..   ++..+..+++|+.|++++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            4566666666665543222222   23567777777777765310   1222344577777777777766433333332 


Q ss_pred             CCCCCEEEccCcc
Q 045291          556 LKTLEVFSVAYNN  568 (682)
Q Consensus       556 l~~L~~L~l~~n~  568 (682)
                      +  ...+++++++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3456777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=5.1e-09  Score=105.68  Aligned_cols=86  Identities=17%  Similarity=0.267  Sum_probs=53.7

Q ss_pred             CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCccc----CchhhcCCCCCCEEeccCCccccccCCchhc
Q 045291          134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGS----LPWCLANMTSLRILDVSFNQLTGSISSSPLV  209 (682)
Q Consensus       134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~  209 (682)
                      +++|++|+|.+|.++........ ....+++|++|+|+.|.+.+.    ++..+..+++|+.|+++.|.+++.. ...+.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~-~~~l~  328 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM-KKELQ  328 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH-HHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH-HHHHH
Confidence            77888888888777320000000 112467899999988888763    3334456788999999999887432 22233


Q ss_pred             c-cCCCcEEecCCCc
Q 045291          210 H-LTSIEMLILSDNH  223 (682)
Q Consensus       210 ~-l~~L~~L~L~~n~  223 (682)
                      . +  ...++++.+.
T Consensus       329 ~al--g~~~~~~~~~  341 (362)
T 2ra8_A          329 KSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHC--CSEEECCSBC
T ss_pred             HHc--CCEEEecCCc
Confidence            2 2  3568888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=6.7e-08  Score=87.83  Aligned_cols=116  Identities=17%  Similarity=0.197  Sum_probs=63.3

Q ss_pred             cccCCCCCCEEeccCC-cCCCC----chhhhcCCCCCCeecCCCCcCcCC----cchhccCCCCCCEEEccCCcCCCC--
Q 045291          455 SLSKCSSLEGLYLNNN-SLSGK----IPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGR--  523 (682)
Q Consensus       455 ~~~~l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~--  523 (682)
                      .+...++|++|++++| .+...    +...+...++|++|+|++|.+.+.    +...+...++|++|+|++|.|+..  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444555555555555 55421    233344455666666666665532    223344445667777777766531  


Q ss_pred             -cchhhccCCCCCcEEEC--CCCcCCCC----chhhhhcCCCCCEEEccCccCc
Q 045291          524 -LIPSTFSNLKQIESLDL--SYNKLNGK----MPHQLVELKTLEVFSVAYNNLS  570 (682)
Q Consensus       524 -~~~~~~~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~  570 (682)
                       .+...+...++|++|+|  ++|.+...    +.+.+...++|+.|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             12344555666777777  66666632    2234445567777777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=8e-08  Score=87.33  Aligned_cols=112  Identities=10%  Similarity=0.125  Sum_probs=61.5

Q ss_pred             CCCccEEECCCC-cCccc----CCccccCCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCcCcCC----cc
Q 045291          435 LTNLKWLLLEGN-RFVGE----IPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNHLEGP----IP  501 (682)
Q Consensus       435 l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~  501 (682)
                      .+.|++|++++| .+...    +...+...++|++|+|++|.+.+.    +...+...++|++|+|++|.|.+.    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            344444444444 43321    223344455566666666655432    233344456666666666666543    23


Q ss_pred             hhccCCCCCCEEEc--cCCcCCCCc---chhhccCCCCCcEEECCCCcCC
Q 045291          502 VEFCQLDLLQILDI--SDNNISGRL---IPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       502 ~~~~~l~~L~~L~L--s~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      ..+...++|++|+|  ++|.+....   +...+...++|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            44555667777777  667775311   2344555677888888877764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.1e-07  Score=90.63  Aligned_cols=82  Identities=21%  Similarity=0.201  Sum_probs=42.3

Q ss_pred             cCCCCCCeecCCCCcCcCC--cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch-------h
Q 045291          481 GNLTRLQYIIMPNNHLEGP--IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP-------H  551 (682)
Q Consensus       481 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~  551 (682)
                      .++++|+.|+|++|.+++.  ++..+..+++|+.|+|++|++++......+..+ +|++|+|++|.+.+..|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            3455666666666666552  234445566666666666666541111222222 56666666666654332       2


Q ss_pred             hhhcCCCCCEEE
Q 045291          552 QLVELKTLEVFS  563 (682)
Q Consensus       552 ~l~~l~~L~~L~  563 (682)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            344556665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=8e-07  Score=78.33  Aligned_cols=94  Identities=16%  Similarity=0.127  Sum_probs=61.8

Q ss_pred             CccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCC-CCcchhHHHhhc----cCcceeeccCcccc
Q 045291           21 SKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESS-LHISLLQSIASL----FPSLKNLSISYCEV   95 (682)
Q Consensus        21 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~l~~~~~~~~   95 (682)
                      ..+|.....-..|++||+|+|.|+...   ...+..+++|++|+|++|. +++.....+..+    ..|++|++++|..+
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~G---L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIG---FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGG---GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHH---HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            344544433457999999999988765   6678899999999999985 776666666653    35666666666544


Q ss_pred             CcccCCCCCCCCCCCceeecCCC
Q 045291           96 NGVLRGQGFPSFKSLEHLHMSFA  118 (682)
Q Consensus        96 ~~~~~~~~~~~l~~L~~L~l~~~  118 (682)
                      ++..-. .+.++++|++|+++++
T Consensus       128 TD~Gl~-~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          128 TDKGII-ALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             CHHHHH-HGGGCTTCCEEEEESC
T ss_pred             CHHHHH-HHhcCCCCCEEECCCC
Confidence            332111 1445666666666663

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=5.5e-07  Score=85.87  Aligned_cols=97  Identities=20%  Similarity=0.217  Sum_probs=68.3

Q ss_pred             ecCCCCcCc---CCcchhccCCCCCCEEEccCCcCCCC-cchhhccCCCCCcEEECCCCcCCCCchhhhhcCC--CCCEE
Q 045291          489 IIMPNNHLE---GPIPVEFCQLDLLQILDISDNNISGR-LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK--TLEVF  562 (682)
Q Consensus       489 L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L  562 (682)
                      ++++.|...   .........+++|+.|+|++|++++. .++..++.+++|+.|+|++|+|++.  ..+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            555666332   12222335688999999999999862 1236677899999999999999966  3344444  99999


Q ss_pred             EccCccCcccCCc-------ccccccccCccc
Q 045291          563 SVAYNNLSGEIPE-------WTAQFATFNESS  587 (682)
Q Consensus       563 ~l~~n~l~~~~~~-------~~~~~~~l~~~~  587 (682)
                      ++++|++.+.+|+       .+..+++++.++
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            9999999987763       234456666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=3.2e-06  Score=74.46  Aligned_cols=34  Identities=6%  Similarity=-0.039  Sum_probs=15.3

Q ss_pred             CccEEECCCCcCcccCCccccCCCCCCEEeccCC
Q 045291          437 NLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN  470 (682)
Q Consensus       437 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  470 (682)
                      .|+.||+++|.++...-..+.++++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3444444444444332233344444455555444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.64  E-value=5.6e-05  Score=67.91  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=28.0

Q ss_pred             cccCCCCCCCEEecCCC-CCCCccccC-ccccCCCCCCCEEeCCCCCCCcch
Q 045291           25 QSMGSFPSLNTLDLSYN-NFTDIAITT-TQELHNFTNLEYLTLDESSLHISL   74 (682)
Q Consensus        25 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~   74 (682)
                      ..+.+-+.|++|+|++| .|....... ...+..-+.|+.|+|++|.+....
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g   86 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE   86 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH
Confidence            34455566777777764 555432111 114555667777777777765433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.63  E-value=4.9e-05  Score=63.90  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             CEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       511 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      ..++.+++.++...+|..+  .++|+.|+|++|+|+.+.+..|..+++|+.|+|++|+|.|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            4789999998711255433  3579999999999998888889999999999999999998665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.36  E-value=0.00019  Score=64.44  Aligned_cols=113  Identities=12%  Similarity=0.151  Sum_probs=62.3

Q ss_pred             cCCCCCCEEeccCC-cCCC----CchhhhcCCCCCCeecCCCCcCcCC----cchhccCCCCCCEEEccCCcCCCC---c
Q 045291          457 SKCSSLEGLYLNNN-SLSG----KIPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGR---L  524 (682)
Q Consensus       457 ~~l~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~---~  524 (682)
                      .+-+.|++|++++| .+.+    .+.+.+..-+.|+.|+|++|.|.+.    +.+++..-+.|+.|+|++|.|...   .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            33455666666654 4432    1334445556666666666666532    223344456677777777777531   1


Q ss_pred             chhhccCCCCCcEEECCCCcC---CC----CchhhhhcCCCCCEEEccCccC
Q 045291          525 IPSTFSNLKQIESLDLSYNKL---NG----KMPHQLVELKTLEVFSVAYNNL  569 (682)
Q Consensus       525 ~~~~~~~l~~L~~L~l~~n~l---~~----~~~~~l~~l~~L~~L~l~~n~l  569 (682)
                      +..++..-+.|++|+|++|..   ..    .+.+.+..-++|..|+++.|..
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            123455556677777775532   21    1234455567777777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.29  E-value=0.00038  Score=58.42  Aligned_cols=56  Identities=20%  Similarity=0.271  Sum_probs=35.4

Q ss_pred             eecCCCCcCc-CCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291          488 YIIMPNNHLE-GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       488 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      .++-+++.++ ..+|..+  -++|+.|+|++|+|+. +.+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCee
Confidence            5666666665 2333222  1357777777777765 55666777777777777777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	682
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	9e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 91.4 bits (225), Expect = 1e-20
 Identities = 73/288 (25%), Positives = 110/288 (38%), Gaps = 46/288 (15%)

Query: 337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSN 396
             R+  LD+S  N     P                       IPSS  N+ +L  L +  
Sbjct: 49  TYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNFLYIGG 85

Query: 397 NHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSL 456
            +               L+ L +++ N+ G +      +  L  L    N   G +P S+
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 457 SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQY-IIMPNNHLEGPIPVEFCQLDLLQILD- 514
           S   +L G+  + N +SG IP   G+ ++L   + +  N L G IP  F  L+L  +   
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205

Query: 515 --------------------ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLV 554
                               I     S           K +  LDL  N++ G +P  L 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 555 ELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
           +LK L   +V++NNL GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 1e-12
 Identities = 38/267 (14%), Positives = 81/267 (30%), Gaps = 14/267 (5%)

Query: 161 SLVHLQELRMADNDLRG--SLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLI 218
               +  L ++  +L     +P  LAN+  L  L +             +  LT +  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 219 LSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP-NFQLNRLLLSSSYGD 277
           ++  +    I        + + + ++ N           SL        +   +S +  D
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 278 GFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPH 337
            +     L+    +    L+           L   +                    +   
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD---------LSRNMLEGDASVLFG 218

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNN 397
                  +          +    +  +L   ++  N ++G++P     +KFL  L++S N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 398 HLTGEIPEYLAVGCVNLNSLALSNNNL 424
           +L GEIP+         +  A +NN  
Sbjct: 279 NLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 55/241 (22%), Positives = 85/241 (35%), Gaps = 5/241 (2%)

Query: 265 QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIND 324
            LN L +          P  +     L ++ ++H  ++G  P +L +    +   F  N 
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN- 135

Query: 325 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFG 384
           ++ G     I     L  +    N   G +P   G       S  IS N L G IP +F 
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 385 NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLE 444
           N+    +    N         + +              N       +     NL  L L 
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH---LAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 445 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 504
            NR  G +PQ L++   L  L ++ N+L G+IP+  GNL R       NN      P+  
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

Query: 505 C 505
           C
Sbjct: 312 C 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.8 bits (224), Expect = 3e-20
 Identities = 71/361 (19%), Positives = 119/361 (32%), Gaps = 24/361 (6%)

Query: 162 LVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSD 221
           L  +  L+     ++ S+   +  + +L  ++ S NQLT       L  L  I M     
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 222 NHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN----FQLNRLLLSSSYGD 277
                  +L  L   +       D + L      +    + N          L S     
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 278 GFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPH 337
                  L    +L  ++   I  N      +L     LE+L   N+ I      P+   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGIL 218

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNN 397
             L  L ++ N  +    +     L +L   +++ N +    P     +  L  L L  N
Sbjct: 219 TNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 398 HLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS 457
            ++   P        NL       N  Q    S   NL NL +L L  N      P  +S
Sbjct: 274 QISNISPLAGLTALTNLE-----LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VS 326

Query: 458 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 517
             + L+ L+  NN +S      L NLT + ++   +N +    P     L  +  L ++D
Sbjct: 327 SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 518 N 518
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 1e-16
 Identities = 75/391 (19%), Positives = 133/391 (34%), Gaps = 41/391 (10%)

Query: 184 ANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
             +       +    +T ++S + L  +T+   L       +   S++ +   + L    
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTT---LQADRLGIK---SIDGVEYLNNLTQIN 72

Query: 244 ADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNG 303
             NN+L            P   L +L+      +       L +  +L  + L + ++  
Sbjct: 73  FSNNQLTDIT--------PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 304 EFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILP 363
             P              L N +        I     L  L        G+   ++  +  
Sbjct: 125 IDPLK-----------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173

Query: 364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN 423
                 +  ++   S  S    +  L+ L  +NN ++   P  +     NL+ L+L+ N 
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 230

Query: 424 LQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 483
           L+        +LTNL  L L  N+     P  LS  + L  L L  N +S   P     L
Sbjct: 231 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GL 284

Query: 484 TRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543
           T L  + +  N            L  L  L +  NNIS     S  S+L +++ L  + N
Sbjct: 285 TALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFANN 339

Query: 544 KLNGKMPHQLVELKTLEVFSVAYNNLSGEIP 574
           K++      L  L  +   S  +N +S   P
Sbjct: 340 KVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 7e-14
 Identities = 56/375 (14%), Positives = 128/375 (34%), Gaps = 37/375 (9%)

Query: 4   LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
           L ++ +     +GI+     +  +    +L  ++ S N  TDI       L N T L  +
Sbjct: 43  LDQVTTLQADRLGIKS----IDGVEYLNNLTQINFSNNQLTDI-----TPLKNLTKLVDI 93

Query: 64  TLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFK----SLEHLHMSFAP 119
            ++ + +      +  +    L   +    +++ +         +    ++  +      
Sbjct: 94  LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL 153

Query: 120 IALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSL 179
            +L           +  L  L+    +  +++       L  L +L+ L   +N +    
Sbjct: 154 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 213

Query: 180 PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRL 239
           P     +T+L  L ++ NQL        L  LT++  L L++N      +L PL   ++L
Sbjct: 214 PLG--ILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKL 265

Query: 240 KIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHI 299
                  N+++           P   L  L       +       + +  +L ++ L   
Sbjct: 266 TELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 300 KMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIG 359
            ++   P   + +  KL+ LF  N+ +       +     + +L   +N      P+   
Sbjct: 318 NISDISP---VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPLA-- 370

Query: 360 DILPSLFSFNISTNA 374
             L  +    ++  A
Sbjct: 371 -NLTRITQLGLNDQA 384

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 3/245 (1%)

Query: 332 LPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQI 391
           +P+      + + +  N               +L    + +N L     ++F  +  L+ 
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 392 LDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGE 451
           LDLS+N     +      G   L++L L    LQ         L  L++L L+ N     
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 452 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 511
              +     +L  L+L+ N +S    R    L  L  +++  N +    P  F  L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 512 ILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571
            L +  NN+S  L     + L+ ++ L L+ N        + +    L+ F  + + +  
Sbjct: 205 TLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPC 262

Query: 572 EIPEW 576
            +P+ 
Sbjct: 263 SLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 55/259 (21%), Positives = 85/259 (32%), Gaps = 7/259 (2%)

Query: 289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN 348
              + + L   +++   P         L  L+L ++ +             L  LD+S+N
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 349 NFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA 408
                +       L  L + ++    L    P  F  +  LQ L L +N L     +   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF- 149

Query: 409 VGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN 468
               NL  L L  N +          L +L  LLL  NR     P +      L  LYL 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST 528
            N+LS      L  L  LQY+ + +N               LQ    S + +    +P  
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCS-LPQR 267

Query: 529 FSNLKQIESLDLSYNKLNG 547
            +         L+ N L G
Sbjct: 268 LAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 2e-11
 Identities = 52/223 (23%), Positives = 79/223 (35%), Gaps = 5/223 (2%)

Query: 378 SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTN 437
           ++P         Q + L  N ++          C NL  L L +N L     +    L  
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 438 LKWLLLEGNRFVGEI-PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
           L+ L L  N  +  + P +      L  L+L+   L    P     L  LQY+ + +N L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 497 EGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVEL 556
           +      F  L  L  L +  N IS  +    F  L  ++ L L  N++    PH   +L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 557 KTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPL 599
             L    +  NNLS    E  A            N ++C    
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 40/266 (15%), Positives = 83/266 (31%), Gaps = 18/266 (6%)

Query: 164 HLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH 223
             Q + +  N +            +L IL +  N L    +++        ++ +  +  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 224 FQI--PISLEPLFNHSRLKIFYADNNELNAEITQS-HSLTAPNFQLNRLLLSSSYGDGFI 280
            +   P +   L     L +      EL   + +   +L     Q N L          +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--------QAL 144

Query: 281 FPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRL 340
                    +L  + L   +++   P         L+ L L  + +            RL
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 341 RFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLT 400
             L +  NN        +  +  +L    ++ N       +      +LQ    S++ + 
Sbjct: 204 MTLYLFANNLSALPTEALAPL-RALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVP 261

Query: 401 GEIPEYLAVGCVNLNSLALSNNNLQG 426
             +P+ LA      +   L+ N+LQG
Sbjct: 262 CSLPQRLA----GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 35/181 (19%), Positives = 55/181 (30%), Gaps = 2/181 (1%)

Query: 436 TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495
              + + L GNR       S   C +L  L+L++N L+         L  L+ + + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 496 LEGPI-PVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLV 554
               + P  F  L  L  L +        L P  F  L  ++ L L  N L         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 555 ELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPICISPATMPEASIG 614
           +L  L    +  N +S           + +      N      P         M      
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 615 N 615
           N
Sbjct: 211 N 211

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 7e-15
 Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 36/269 (13%)

Query: 331 RLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ 390
           ++P         LD+ NN        +  + L +L +  +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRN------------------ 432
            L LS N L  E+PE +      L         ++  +F+                    
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 433 -----FNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 487
                  +  L ++ +        IPQ L    SL  L+L+ N ++      L  L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 488 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547
            + +  N +             L+ L +++N +    +P   ++ K I+ + L  N ++ 
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISA 256

Query: 548 ------KMPHQLVELKTLEVFSVAYNNLS 570
                   P    +  +    S+  N + 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 45/217 (20%), Positives = 75/217 (34%), Gaps = 6/217 (2%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
           D+ P     ++  N +       F N+K L  L L NN ++   P   A   V L  L L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 86

Query: 420 SNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 479
           S N L+         L  L+    E  +    +   L++   +E L  N    SG     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 480 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLD 539
              + +L YI + + ++     +       L  L +  N I+     ++   L  +  L 
Sbjct: 146 FQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKV-DAASLKGLNNLAKLG 201

Query: 540 LSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEW 576
           LS+N ++      L     L    +  N L       
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 1e-13
 Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 17/269 (6%)

Query: 280 IFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRR 339
           I      +  +L  + L + K++   P        KLE L+L  + +     LP    + 
Sbjct: 46  IKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLKE---LPEKMPKT 101

Query: 340 LRFLDVSNNNFQGHMPVEIGDI-LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH 398
           L+ L V  N            +    +     +     G    +F  MK L  + +++ +
Sbjct: 102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161

Query: 399 LTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK 458
           +T  IP+ L     +L  L L  N +     +    L NL  L L  N        SL+ 
Sbjct: 162 IT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL------LQI 512
              L  L+LNNN L  K+P  L +   +Q + + NN++      +FC             
Sbjct: 218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 513 LDISDNNIS-GRLIPSTFSNLKQIESLDL 540
           + +  N +    + PSTF  +    ++ L
Sbjct: 277 VSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 2e-13
 Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 13/262 (4%)

Query: 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN 349
           D   +DL + K+         +N   L TL LIN+ I         P  +L  L +S N 
Sbjct: 32  DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 350 FQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAV 409
            +  +P ++   L  L         +  S+ +    M  +++          E   +   
Sbjct: 91  LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-- 147

Query: 410 GCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN 469
           G   L+ + +++ N+            +L  L L+GN+       SL   ++L  L L+ 
Sbjct: 148 GMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG-----RL 524
           NS+S      L N   L+ + + NN L   +P        +Q++ + +NNIS        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 525 IPSTFSNLKQIESLDLSYNKLN 546
            P   +       + L  N + 
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 2e-12
 Identities = 40/218 (18%), Positives = 67/218 (30%), Gaps = 8/218 (3%)

Query: 378 SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTN 437
            +P          +LDL NN +T            NL++L L NN +          L  
Sbjct: 24  KVPKDLPPD--TALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497
           L+ L L  N+      +       L         +   +   L  +  +  +        
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSS 139

Query: 498 GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK 557
           G     F  +  L  + I+D NI+  +      +L     L L  NK+       L  L 
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL---TELHLDGNKITKVDAASLKGLN 195

Query: 558 TLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLC 595
            L    +++N++S       A      E     N  + 
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 40/263 (15%), Positives = 85/263 (32%), Gaps = 13/263 (4%)

Query: 164 HLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH 223
               L + +N +         N+ +L  L +  N+++     +    L  +E L LS N 
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQ 90

Query: 224 FQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPK 283
            +  +  +       L++   +  ++   +    +           L SS          
Sbjct: 91  LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-----ENG 144

Query: 284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL 343
                  L ++ ++   +    P  L  +   L  L L  + I       +     L  L
Sbjct: 145 AFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 344 DVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEI 403
            +S N+             P L   +++ N L   +P    + K++Q++ L NN+++   
Sbjct: 201 GLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 404 PEYLAVGCVNLNSLALSNNNLQG 426
                    N    + S  +L  
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 6e-11
 Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 11/189 (5%)

Query: 389 LQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448
           L+++  S+  L  ++P+ L     +   L L NN +         NL NL  L+L  N+ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 508
               P + +    LE LYL+ N L     +    L  L+   +  N +       F  L+
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLN 124

Query: 509 LLQILDISDNNI-SGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN 567
            + ++++  N + S  +    F  +K++  + ++   +          L  L    +  N
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGN 181

Query: 568 NLSGEIPEW 576
            ++      
Sbjct: 182 KITKVDAAS 190

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 40/257 (15%), Positives = 82/257 (31%), Gaps = 20/257 (7%)

Query: 31  PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSI 90
           P    LDL  N  T+I      +  N  NL  L L  + +      + A L   L+ L +
Sbjct: 31  PDTALLDLQNNKITEI---KDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYL 86

Query: 91  SYCEVNGVLRG------QGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYL---- 140
           S  ++  +         +       +  +  S          +++    + S        
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 141 ----SLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSF 196
                LS   +   +   + QGL     L EL +  N +       L  + +L  L +SF
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 197 NQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQS 256
           N ++   + S        E+ + ++   ++P  L        + +   + + + +     
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 257 HSLTAPNFQLNRLLLSS 273
                     + + L S
Sbjct: 265 PGYNTKKASYSGVSLFS 281

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (141), Expect = 8e-10
 Identities = 54/457 (11%), Positives = 111/457 (24%), Gaps = 30/457 (6%)

Query: 136 SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG----SLPWCLANMTSLRI 191
            ++ L +    L   S     + L  L   Q +R+ D  L       +   L    +L  
Sbjct: 3   DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 192 LDVSFNQLTG----SISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNN 247
           L++  N+L       +          I+ L L +                 L      + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 248 ELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPT 307
             N        L        +           +    L +             +    P 
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQ---------CRLEKLQLEYCSLSAASCEPLASVLRAKPD 170

Query: 308 WLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS 367
           +     +  +        +    +        L+       +        I     SL  
Sbjct: 171 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230

Query: 368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH 427
             + +N L     +            L    +          G +     A  +      
Sbjct: 231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 290

Query: 428 MFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 487
             +   +                     +  CS       + +S+  +    L    ++ 
Sbjct: 291 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL--QIS 348

Query: 488 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG---RLIPSTFSNLKQIESLDLSYNK 544
              + +  +            +L++L ++D ++S      + +T      +  LDLS N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 545 LNGKMPHQLVE-----LKTLEVFSVAYNNLSGEIPEW 576
           L      QLVE        LE   +     S E+ + 
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 5e-08
 Identities = 52/465 (11%), Positives = 116/465 (24%), Gaps = 33/465 (7%)

Query: 32  SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLF---PSLKNL 88
            + +LD+     +D      + L      + + LD+  L  +  + I+S     P+L  L
Sbjct: 3   DIQSLDIQCEELSDARWA--ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 89  SISYCEVNGVLRGQGFPSFKS----LEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG 144
           ++   E+  V         ++    ++ L +    +      +                 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 145 SILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
             L  ++   L          +  ++       S   C    + LR           +  
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF 264
            +        + L  S    +              +         +    +  +L +   
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC--GIVASKASLRELALGSNKL 238

Query: 265 QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIND 324
               +                    +          +              L    L ++
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 325 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN--------ISTNALH 376
                    + P  +L  L V + +F          +L               +    + 
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 377 GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA---VGCVNLNSLALSNNNLQGHMFSR-- 431
                       L++L L++  ++      LA   +   +L  L LSNN L      +  
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 432 ---NFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473
                    L+ L+L    +  E+         L+ L  +  SL 
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 45/434 (10%), Positives = 113/434 (26%), Gaps = 19/434 (4%)

Query: 2   GGLRKLKSFGLSGVGIRD--GSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTN 59
             L++ +   L   G+ +     +  ++   P+L  L+L  N   D+ +    +     +
Sbjct: 24  PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 83

Query: 60  LEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAP 119
            +   L   +  ++               ++    ++  L G           L      
Sbjct: 84  CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 143

Query: 120 IALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSL 179
             L   +  +   S   L  +  +       +    D     +  L +          +L
Sbjct: 144 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 203

Query: 180 PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRL 239
                 +TS    D+     + +      +    +  + +++    +      L      
Sbjct: 204 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 263

Query: 240 KIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHI 299
           +                 +  +              G   +    L     LE + +   
Sbjct: 264 ECGITAKGCG-DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 322

Query: 300 KMNGEFPT--------WLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ 351
                  +               ++    L +  +    +    P   LR L +++ +  
Sbjct: 323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 382

Query: 352 GHMPVEIGDIL---PSLFSFNISTNALHGSIPSSFG-----NMKFLQILDLSNNHLTGEI 403
                 +   L    SL   ++S N L  +               L+ L L + + + E+
Sbjct: 383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442

Query: 404 PEYLAVGCVNLNSL 417
            + L     +  SL
Sbjct: 443 EDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 4e-06
 Identities = 54/447 (12%), Positives = 119/447 (26%), Gaps = 22/447 (4%)

Query: 59  NLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGV---LRGQGFPSFKSLEHLHM 115
           +++ L +    L  +    +  L    + + +  C +                +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 116 SFAPI--ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADN 173
               +        LQ +      ++ LSL    L      +L   L +L  LQEL ++DN
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 174 DLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPL 233
            L  +    L          +   QL     S+      +  +    D       + +  
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 234 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF 293
               R+      ++    E  +  S    +     L    +            ++     
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGH 353
           +      +             +          +    R            +   +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 354 MPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG--------EIPE 405
           +   + +    L S  + + +   +  S F ++       L               E+ +
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 406 YLAVGCVNLNSLALSNNNLQG----HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK--- 458
            L      L  L L++ ++       + +      +L+ L L  N         L +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 459 --CSSLEGLYLNNNSLSGKIPRWLGNL 483
                LE L L +   S ++   L  L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 6e-06
 Identities = 55/449 (12%), Positives = 124/449 (27%), Gaps = 27/449 (6%)

Query: 84  SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGE---SMPSLKYL 140
            +++L I   E++     +  P  +  + + +      L  +  + I       P+L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD--CGLTEARCKDISSALRVNPALAEL 60

Query: 141 SLSGSILGTNSSRILDQGL-CSLVHLQELRMADNDLR----GSLPWCLANMTSLRILDVS 195
           +L  + LG      + QGL      +Q+L + +  L     G L   L  + +L+ L +S
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 196 FNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQ 255
            N L  +        L   +  +         +S       + +     D  EL      
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 256 SHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAK 315
            +                      +    +   +  +   +   K +             
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 316 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNAL 375
           +    L    +    RL                +    +  +      SL    +     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 376 HGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA--------VGCVNLNSLALSNNNLQGH 427
                +       L+ L + +   T     + +        +  + +++  L +  ++  
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 428 MFSRNFNLTNLKWLLLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLSGKIPRWLG-- 481
                   + L+ L L            +  +L    SL  L L+NN L       L   
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 482 ---NLTRLQYIIMPNNHLEGPIPVEFCQL 507
                  L+ +++ + +    +      L
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 412 VNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRF----VGEIPQSLSKCSSLEGLY 466
           +++ SL +    L    ++     L   + + L+          +I  +L    +L  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 467 LNNNSLSGKIPRWLGNL 483
           L +N L       +   
Sbjct: 62  LRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 4/74 (5%)

Query: 510 LQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE----LKTLEVFSVA 565
           +Q LDI    +S          L+Q + + L    L       +         L   ++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 566 YNNLSGEIPEWTAQ 579
            N L         Q
Sbjct: 64  SNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 6   KLKSFGLSGVGIRD--GSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL--HNFTNLE 61
            L+   L+   + D   S L  ++ +  SL  LDLS N   D  I    E        LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 62  YLTLDESSLH---ISLLQSIASLFPSLKNLS 89
            L L +          LQ++    PSL+ +S
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 10/207 (4%)

Query: 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL 399
              ++    N    +P ++          ++S N L+    ++      L  L+L    L
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 400 TGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKC 459
           T    +      + +      ++N    +      L  L  L +  NR       +L   
Sbjct: 68  TKLQVDG----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 460 SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 519
             L+ LYL  N L    P  L    +L+ + + NN+L          L+ L  L + +N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 520 ISGRLIPSTFSNLKQIESLDLSYNKLN 546
           +    IP  F     +    L  N   
Sbjct: 184 LYT--IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 31/207 (14%), Positives = 49/207 (23%), Gaps = 19/207 (9%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
                 L LS N        +   L  +T L  L LD + L          +  +L  L 
Sbjct: 30  PKDTTILHLSENLLYTF---SLATLMPYTRLTQLNLDRAELTKL------QVDGTLPVLG 80

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGT 149
                 N +              +         +     + G       YL         
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-------G 133

Query: 150 NSSRILDQGLCSLVHLQELRMAD-NDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPL 208
           N  + L  GL +     E      N+L       L  + +L  L +  N L         
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGF 191

Query: 209 VHLTSIEMLILSDNHFQIPISLEPLFN 235
                +    L  N +     +     
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRR 218

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 7/169 (4%)

Query: 378 SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTN 437
            IP           L L++N L     + L     +L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497
           ++ L L  N+      +       L+ L L +N +S  +P    +L  L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 498 GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
               + +   + L+   ++             S ++ ++  DL +++  
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARC----GAPSKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 3/148 (2%)

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL 510
           EIP+ +        L LN+N L       L         +    +    I     +    
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
                   N    +    F  L Q+++L+L  N+++  MP     L +L   ++A N  +
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 571 GEIPEWTAQFATFNESSYEGNIFLCGLP 598
                         + S  G    CG P
Sbjct: 140 CNCHLA-WFAEWLRKKSLNGGAARCGAP 166

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 5/157 (3%)

Query: 316 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNAL 375
              L L ++ +G      +              N    +     +    +    +  N +
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 376 HGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNL 435
                  F  +  L+ L+L +N ++  +P        +L SL L++N    +     F  
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFNCNCHLAWF-A 148

Query: 436 TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 472
             L+   L G       P  +      +   L ++  
Sbjct: 149 EWLRKKSLNGGAARCGAPSKVRDVQIKD---LPHSEF 182

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFV 449
           Q LDL+  +L  ++   L      + +     + +   +   +F+   ++ + L  +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 59

Query: 450 GE-IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 508
              +   LS+CS L+ L L    LS  I   L   + L  + +          ++     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 509 L 509
            
Sbjct: 120 C 120

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 12/242 (4%)

Query: 343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE 402
           LD++  N    +   +  +   + +F    + +   +   F   + +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 403 IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL--------LLEGNRFVGEIPQ 454
               +   C  L +L+L    L   + +     +NL  L             + +     
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 455 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514
            L + +           +   +      +T+L       N  +  +     +   L  LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 515 ISDNNISGRLIPSTFSNLKQIESLDLSY-NKLNGKMPHQLVELKTLEVFSVAYNNLSGEI 573
           +SD+ +        F  L  ++ L LS    +  +   +L E+ TL+   V      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 574 PE 575
             
Sbjct: 242 QL 243

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 40/268 (14%), Positives = 80/268 (29%), Gaps = 19/268 (7%)

Query: 294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGH 353
           +DL+   ++ +    LL     +         +  P      P R ++ +D+SN+  +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG--VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 354 MPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVN 413
               I      L + ++    L   I ++      L  L+LS      E      +    
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-- 119

Query: 414 LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473
                   + L     S  F+ T     +   +        +LS           N   S
Sbjct: 120 -------CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-------KNLQKS 165

Query: 474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK 533
                       +   +  +  L+     EF QL+ LQ L +S               + 
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 534 QIESLDLSYNKLNGKMPHQLVELKTLEV 561
            +++L +     +G +      L  L++
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 31/219 (14%), Positives = 72/219 (32%), Gaps = 7/219 (3%)

Query: 5   RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLT 64
           + + +F      +    + L    S   +  +DLS +      +     L   + L+ L+
Sbjct: 23  QGVIAFRCPRSFM---DQPLAEHFSPFRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNLS 77

Query: 65  LDESSLHISLLQSIASLFPSLKNLSISYCE-VNGVLRGQGFPSFKSLEHLHMSFAPIALN 123
           L+   L   ++ ++A    +L  L++S C   +         S   L+ L++S+      
Sbjct: 78  LEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 136

Query: 124 TSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL 183
                 +     ++  L+LSG       S +          +         L+       
Sbjct: 137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 196

Query: 184 ANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDN 222
             +  L+ L +S        +   L  + +++ L +   
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 11/231 (4%)

Query: 133 SMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRIL 192
           S   ++++ LS S++  ++   L   L     LQ L +    L   +   LA  ++L  L
Sbjct: 44  SPFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

Query: 193 DVSFNQ-LTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL-- 249
           ++S     +     + L   + ++ L LS         ++    H    I   + +    
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 250 NAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWL 309
           N + +   +L      L  L LS S        +  +  + L+ + LS            
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 310 LENNAKLETLFLIN-DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIG 359
           L     L+TL +      G    L       L  L ++ ++F       IG
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLK----EALPHLQINCSHFTTIARPTIG 267

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 57/315 (18%), Positives = 94/315 (29%), Gaps = 23/315 (7%)

Query: 161 SLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILS 220
              HL+ L  + N L   LP       SL+ L V  N L       PL+    +    L 
Sbjct: 56  LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 111

Query: 221 DNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSS------ 274
                   S   + +     +    +   + E   + +         + L   +      
Sbjct: 112 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 171

Query: 275 YGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPI 334
                +    L  +  +   ++       +   +L    A    L  + D       L +
Sbjct: 172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 231

Query: 335 HPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394
             +      ++  +     +   I   L  L       NA    I S       L+ L++
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ 454
           SNN L  E+P         L  L  S N+L            NLK L +E N    E P 
Sbjct: 292 SNNKLI-ELPALPP----RLERLIASFNHLA----EVPELPQNLKQLHVEYNPLR-EFPD 341

Query: 455 SLSKCSSLEGLYLNN 469
                 S+E L +N+
Sbjct: 342 IP---ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 55/355 (15%), Positives = 91/355 (25%), Gaps = 41/355 (11%)

Query: 182 CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF-QIPISLEPLFNHSRLK 240
           CL        L+++   L+ S+   P      +E L+ S N   ++P           LK
Sbjct: 35  CLDR--QAHELELNNLGLS-SLPELP----PHLESLVASCNSLTELPELP------QSLK 81

Query: 241 IFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIK 300
               DNN L A       L       N+L       +           + L+ +      
Sbjct: 82  SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141

Query: 301 MNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD 360
           +                       +I                L+           +    
Sbjct: 142 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ 201

Query: 361 ILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS 420
            LP L +     N L                 +   +                       
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELP-----------------Q 244

Query: 421 NNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 480
           +        +    L+ L   L   N    EI        SLE L ++NN L  ++P   
Sbjct: 245 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP 303

Query: 481 GNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQI 535
             L RL   I   NHL   +P        L+ L +  N +     P    +++ +
Sbjct: 304 PRLERL---IASFNHLAE-VPELPQN---LKQLHVEYNPLRE--FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 466 YLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI 525
               N+ S +I         L+ + + NN L   +P    +L   + L  S N+++   +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLAE--V 319

Query: 526 PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEV 561
           P    NLK    L + YN L  + P     ++ L +
Sbjct: 320 PELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 487 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
              +   N     I         L+ L++S+N +    +P+    L   E L  S+N L 
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRL---ERLIASFNHLA 317

Query: 547 GKMPHQLVELKTLEVFSVAYNNLSGEIPEW 576
            ++P     LK L    V YN L  E P+ 
Sbjct: 318 -EVPELPQNLKQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 17/87 (19%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89
            PSL  L++S N   ++             LE L    + L       +  L  +LK L 
Sbjct: 283 PPSLEELNVSNNKLIELP-------ALPPRLERLIASFNHL-----AEVPELPQNLKQLH 330

Query: 90  ISYCEVNGVLRGQGFPSFKSLEHLHMS 116
           + Y  +            +S+E L M+
Sbjct: 331 VEYNPLREFP-----DIPESVEDLRMN 352

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG 498
           + L L        +   L +   +  L L++N L    P  L  L  L+ +   +N LE 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 499 PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK 548
              V        Q L + +N +          +  ++  L+L  N L  +
Sbjct: 58  VDGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 10/126 (7%)

Query: 369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHM 428
           +++   L  ++      +  +  LDLS+N L    P              L  ++     
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPAL----AALRCLEVLQASDNALEN 57

Query: 429 FSRNFNLTNLKWLLLEGNRFVG-EIPQSLSKCSSLEGLYLNNNSLSGK---IPRWLGNLT 484
                NL  L+ LLL  NR       Q L  C  L  L L  NSL  +     R    L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 485 RLQYII 490
            +  I+
Sbjct: 118 SVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHM--FSRNFNLTNLKWLLLEGNR 447
           ++L L++  LT  +  +L    + +  L LS+N L+      +    L  L+      + 
Sbjct: 1   RVLHLAHKDLT--VLCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQA-----SD 52

Query: 448 FVGEIPQSLSKCSSLEGLYLNNNSL-SGKIPRWLGNLTRLQYIIMPNNHLEG 498
              E    ++    L+ L L NN L      + L +  RL  + +  N L  
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNN 397
             +  LD+S+N  +   P      L  L     S N           N+  LQ L L NN
Sbjct: 20  LLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDN--ALENVDGVANLPRLQELLLCNN 75

Query: 398 HLTGEIPEYLAVGCVNLNSLALSNNNLQG 426
            L         V C  L  L L  N+L  
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 24  LQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP 83
           L  +     +  LDLS+N    +             L  L + ++S +        +  P
Sbjct: 13  LCHLEQLLLVTHLDLSHNRLRALP-------PALAALRCLEVLQASDNALENVDGVANLP 65

Query: 84  SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYL 140
            L+ L +    +      Q   S   L  L++    +       + + E +PS+  +
Sbjct: 66  RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 29/238 (12%), Positives = 68/238 (28%), Gaps = 27/238 (11%)

Query: 184 ANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
             + +   +    + +T +++ +    L  I  L           ++E +   + L    
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 244 ADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNG 303
             +N++       +           L   +         K +     L+ +    +    
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 304 EFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILP 363
                 L   + L+ L+L  + I     L    + +       +        +     L 
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL-----SIGNAQVSDLTPLANLS 173

Query: 364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN 421
            L +     N +    P    ++  L  + L NN ++   P        NL  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 29/197 (14%), Positives = 68/197 (34%), Gaps = 15/197 (7%)

Query: 30  FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHI-----SLLQSIASLFPS 84
              + TL       T I     + +    NL  L L ++ +       +L +        
Sbjct: 40  LDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94

Query: 85  LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG 144
               ++S       ++     S +  +   ++                ++  L  L+   
Sbjct: 95  NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154

Query: 145 SILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
            +   N+       L +L  L  L+  DN +    P  LA++ +L  + +  NQ++    
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS- 211

Query: 205 SSPLVHLTSIEMLILSD 221
             PL + +++ ++ L++
Sbjct: 212 --PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 479 WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESL 538
            L NL++L  +   +N +    P     L  L  + + +N IS  + P   +N   +  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIV 222

Query: 539 DLS 541
            L+
Sbjct: 223 TLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 31/217 (14%), Positives = 70/217 (32%), Gaps = 20/217 (9%)

Query: 36  LDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEV 95
           +    +N TD          +   +  L+       ++ ++ +  L  +L  L +   ++
Sbjct: 24  IAAGKSNVTDTVTQA-----DLDGITTLSA--FGTGVTTIEGVQYL-NNLIGLELKDNQI 75

Query: 96  NGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRI- 154
             +   +       LE        ++       I    + S +   ++     +N   + 
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 155 -----LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLV 209
                +              ++  + + S    LAN++ L  L    N+++      PL 
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---PLA 192

Query: 210 HLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
            L ++  + L +N       + PL N S L I    N
Sbjct: 193 SLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 24/219 (10%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
             L +        + +  ++  +  ++  +  L      +T  I         NL  L L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLEL 70

Query: 420 SNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 479
            +N +      +N        L     + V  I    S  +         +         
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 480 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDL--------------LQILDISDNNISGRLI 525
           L  L      I   + L G   +++  +                L  L   DN IS    
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--- 187

Query: 526 PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV 564
            S  ++L  +  + L  N+++   P  L     L + ++
Sbjct: 188 ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 4/211 (1%)

Query: 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246
            +   L     +L   I          +E + +S N     I  +   N  +L     + 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 247 NELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306
                 I        PN Q   +  S++          ++    +      +I ++    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLI--SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 307 TWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLF 366
              +  + +   L+L  + I        +  +     ++S+NN    +P ++        
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL-NLSDNNNLEELPNDVFHGASGPV 204

Query: 367 SFNISTNALHGSIPSSFGNMKFLQILDLSNN 397
             +IS   +H        N+K L+     N 
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 34/213 (15%), Positives = 70/213 (32%), Gaps = 4/213 (1%)

Query: 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419
           D+  +          L      +F     L+ +++S N +   I   +      L+ + +
Sbjct: 26  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 85

Query: 420 SNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 479
              N   ++    F        LL  N  +  +P      S  + L    ++++      
Sbjct: 86  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 480 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS--DNNISGRLIPSTFSNLKQIES 537
              +      ++   +  G   +  C  +  Q+ +++  DNN    L    F        
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 205

Query: 538 LDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
           LD+S  +++    + L  LK L   S    NL 
Sbjct: 206 LDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 381 SSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKW 440
           + + N    + LDL    +   I   L       +++  S+N +          L  LK 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 441 LLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG----KIPRWLGNLTRLQYIIMPNNHL 496
           LL+  NR              L  L L NNSL           L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 497 EGPIPVEFCQLDLLQILD 514
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 503 EFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVF 562
           ++      + LD+    I    I +  + L Q +++D S N++          L+ L+  
Sbjct: 13  QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 563 SVAYNNLSGEIPEW 576
            V  N +       
Sbjct: 69  LVNNNRICRIGEGL 82

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 41/299 (13%), Positives = 78/299 (26%), Gaps = 18/299 (6%)

Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
               S+K + LSG+ +GT ++R L + + S   L+    +D             +  L  
Sbjct: 28  LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 87

Query: 192 LDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLE-PLFNHSRLKIFYADNNELN 250
             +   +L     S      T+ E LI   +       L                     
Sbjct: 88  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 147

Query: 251 AEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLL 310
             + +      P   +         G    + K       L  V +    +  E      
Sbjct: 148 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH-- 205

Query: 311 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI 370
                     L+ + +     L +   +   F  + ++     +          L    +
Sbjct: 206 ----------LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 255

Query: 371 STNA-LHGSIPSSFGNMKFLQILDLSNNHLTGE----IPEYLAVGCVNLNSLALSNNNL 424
           S           S      LQ L L  N +  +    +   +     +L  L L+ N  
Sbjct: 256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 8e-05
 Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 24/216 (11%)

Query: 355 PVEIGDILP-----SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIP-EYLA 408
           P  I  I            N+   ++  ++  +   +  +  +  +N+ +      +YL 
Sbjct: 11  PTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYL- 67

Query: 409 VGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN 468
               N+  L L+ N L          L NLK L             S  K          
Sbjct: 68  ---PNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119

Query: 469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST 528
            ++    I   +         +  N   +  +     +LD L + D   ++I        
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP------ 173

Query: 529 FSNLKQIESLDLSYNKLNGKMP-HQLVELKTLEVFS 563
            + L ++++L LS N ++       L  L  LE+FS
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 19/134 (14%), Positives = 33/134 (24%)

Query: 378 SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTN 437
                    + L  L + N      +      G   L +L +  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497
           L  L L  N       +++   S  E +   N        RWL          +P   L+
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 498 GPIPVEFCQLDLLQ 511
                    +    
Sbjct: 142 CHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 20/141 (14%), Positives = 34/141 (24%), Gaps = 26/141 (18%)

Query: 459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518
                GL    +         L     L  +                         I + 
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTEL------------------------YIENQ 41

Query: 519 NISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTA 578
                L       L ++ +L +  + L    P        L   ++++N L   +   T 
Sbjct: 42  QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTV 100

Query: 579 QFATFNESSYEGNIFLCGLPL 599
           Q  +  E    GN   C   L
Sbjct: 101 QGLSLQELVLSGNPLHCSCAL 121

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL 510
           ++   +SK        L+   L  +    L        +   ++     + +    +  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAAT-LRIIEENIPEL 67

Query: 511 QILDISDNNISGR-LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569
             L++S+N +     + S       ++ L+LS N+L  +     ++   LE   +  N+L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 570 SGEIPE 575
           S    +
Sbjct: 128 SDTFRD 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	682
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.96
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.62
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.32

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=5.7e-29  Score=248.52  Aligned_cols=259  Identities=32%  Similarity=0.529  Sum_probs=231.2

Q ss_pred             CCccEEEccCCcCCC--CCChhhhhcCCCceEEEecC-CcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCC
Q 045291          338 RRLRFLDVSNNNFQG--HMPVEIGDILPSLFSFNIST-NALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNL  414 (682)
Q Consensus       338 ~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  414 (682)
                      ..++.|+++++.+.+  .+|..+.. +++|++|++++ |.+.+.+|..|.++++|++|++++|++.+..+ ..+..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhcccccccccc-ccccchhhh
Confidence            368889999998876  47787776 99999999986 78888899999999999999999999985444 445579999


Q ss_pred             CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCC-CEEeccCCcCCCCchhhhcCCCCCCeecCCC
Q 045291          415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSL-EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN  493 (682)
Q Consensus       415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  493 (682)
                      +.++++.|.+.+..|..+..++.++.+++++|.+.+.+|..+..+.++ +.+++++|++.+..|..+..+..+ .+++++
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~  206 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCS
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            999999999998888999999999999999999998899988888776 889999999998888888877655 799999


Q ss_pred             CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccC
Q 045291          494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI  573 (682)
Q Consensus       494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  573 (682)
                      +...+..|..+..+++++.+++++|.+.+  .+..+..+++|+.|++++|++++.+|+.+..+++|++|+|++|+++|.+
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~--~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             ccccccccccccccccccccccccccccc--cccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence            99999999999999999999999999986  4557888999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCcccccCCCCCCCCCCCCC
Q 045291          574 PEWTAQFATFNESSYEGNIFLCGLPLPIC  602 (682)
Q Consensus       574 ~~~~~~~~~l~~~~~~~n~~~c~~~~~~~  602 (682)
                      |+ ...+++++.+++.+|+..|+.|++.|
T Consensus       285 P~-~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         285 PQ-GGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CC-STTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             CC-cccCCCCCHHHhCCCccccCCCCCCC
Confidence            98 67889999999999999999887755

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.3e-25  Score=231.36  Aligned_cols=341  Identities=24%  Similarity=0.280  Sum_probs=215.0

Q ss_pred             CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291          134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS  213 (682)
Q Consensus       134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~  213 (682)
                      +.+|++|+++++.+..    +.  .++.+++|++|++++|++++..  .++++++|++|++++|.+. .+  ..+..+++
T Consensus        43 l~~l~~L~l~~~~I~~----l~--gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i--~~l~~l~~  111 (384)
T d2omza2          43 LDQVTTLQADRLGIKS----ID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DI--TPLANLTN  111 (384)
T ss_dssp             HTTCCEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CC--GGGTTCTT
T ss_pred             hCCCCEEECCCCCCCC----cc--ccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cc--cccccccc
Confidence            6788888888888855    43  5778888888888888887543  3888888888888888887 33  23778888


Q ss_pred             CcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCE
Q 045291          214 IEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF  293 (682)
Q Consensus       214 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~  293 (682)
                      |+.|+++++.+++...   ......+.......+.+.......                            .........
T Consensus       112 L~~L~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~----------------------------~~~~~~~~~  160 (384)
T d2omza2         112 LTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALS----------------------------GLTSLQQLS  160 (384)
T ss_dssp             CCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGT----------------------------TCTTCSEEE
T ss_pred             cccccccccccccccc---cccccccccccccccccccccccc----------------------------ccccccccc
Confidence            8888888887763222   233344444444443332110000                            000000000


Q ss_pred             EEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCC
Q 045291          294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN  373 (682)
Q Consensus       294 L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  373 (682)
                      .....                         ...     ..+.............+...  ..... ..+++++.+++++|
T Consensus       161 ~~~~~-------------------------~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~-~~l~~~~~l~l~~n  207 (384)
T d2omza2         161 FGNQV-------------------------TDL-----KPLANLTTLERLDISSNKVS--DISVL-AKLTNLESLIATNN  207 (384)
T ss_dssp             EEESC-------------------------CCC-----GGGTTCTTCCEEECCSSCCC--CCGGG-GGCTTCSEEECCSS
T ss_pred             ccccc-------------------------chh-----hhhccccccccccccccccc--ccccc-ccccccceeeccCC
Confidence            00000                         000     01111222333333333322  12222 23667777777777


Q ss_pred             cCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC
Q 045291          374 ALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP  453 (682)
Q Consensus       374 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  453 (682)
                      .+++..+  +..+++|++|++++|++. .++.  +..+++|+.|++++|++++..+  +..+++|++|+++++.+.+.. 
T Consensus       208 ~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~-  279 (384)
T d2omza2         208 QISDITP--LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-  279 (384)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-
T ss_pred             ccCCCCc--ccccCCCCEEECCCCCCC-Ccch--hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC-
Confidence            7665443  345567777777777776 4432  2357777777777777765443  556777888888887776442 


Q ss_pred             ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCC
Q 045291          454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK  533 (682)
Q Consensus       454 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~  533 (682)
                       .+..++.++.+++.+|.+.+.  ..+..+++++.|++++|++++..+  +..+++|++|++++|++++  ++ .+++++
T Consensus       280 -~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~--l~-~l~~l~  351 (384)
T d2omza2         280 -PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VS-SLANLT  351 (384)
T ss_dssp             -GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC--CG-GGGGCT
T ss_pred             -ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC--Ch-hHcCCC
Confidence             366777888888888887643  236777888888888888876543  6778888888888888874  33 577888


Q ss_pred             CCcEEECCCCcCCCCchhhhhcCCCCCEEEccCc
Q 045291          534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN  567 (682)
Q Consensus       534 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  567 (682)
                      +|++|++++|++++..|  +.++++|+.|++++|
T Consensus       352 ~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            88888888888886554  778888888888887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.1e-25  Score=231.97  Aligned_cols=343  Identities=27%  Similarity=0.317  Sum_probs=201.8

Q ss_pred             CCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhc
Q 045291          105 PSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLA  184 (682)
Q Consensus       105 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  184 (682)
                      ..+.+|++|+++++.+  . .+ +++.. +++|++|++++|.+..    ++  .++++++|++|++++|.+.+..  .++
T Consensus        41 ~~l~~l~~L~l~~~~I--~-~l-~gl~~-L~nL~~L~Ls~N~l~~----l~--~l~~L~~L~~L~L~~n~i~~i~--~l~  107 (384)
T d2omza2          41 TDLDQVTTLQADRLGI--K-SI-DGVEY-LNNLTQINFSNNQLTD----IT--PLKNLTKLVDILMNNNQIADIT--PLA  107 (384)
T ss_dssp             HHHTTCCEEECCSSCC--C-CC-TTGGG-CTTCCEEECCSSCCCC----CG--GGTTCTTCCEEECCSSCCCCCG--GGT
T ss_pred             HHhCCCCEEECCCCCC--C-Cc-ccccc-CCCCCEEeCcCCcCCC----Cc--cccCCccccccccccccccccc--ccc
Confidence            4577899999999544  2 22 44555 9999999999999976    66  3899999999999999998543  388


Q ss_pred             CCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcc
Q 045291          185 NMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF  264 (682)
Q Consensus       185 ~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  264 (682)
                      .+++|+.|+++++.+++ +  ........+.......|.+.....   .......+........                
T Consensus       108 ~l~~L~~L~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~----------------  165 (384)
T d2omza2         108 NLTNLTGLTLFNNQITD-I--DPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQV----------------  165 (384)
T ss_dssp             TCTTCCEEECCSSCCCC-C--GGGTTCTTCSEEEEEEEEECCCGG---GTTCTTCSEEEEEESC----------------
T ss_pred             ccccccccccccccccc-c--cccccccccccccccccccccccc---cccccccccccccccc----------------
Confidence            99999999999999874 2  334556677777777776542111   1111111111111000                


Q ss_pred             cccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEE
Q 045291          265 QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  344 (682)
Q Consensus       265 ~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  344 (682)
                                     .....+.............+....  ... ...+++++.+++++|.+.+..+  +..        
T Consensus       166 ---------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~~~~~l~l~~n~i~~~~~--~~~--------  217 (384)
T d2omza2         166 ---------------TDLKPLANLTTLERLDISSNKVSD--ISV-LAKLTNLESLIATNNQISDITP--LGI--------  217 (384)
T ss_dssp             ---------------CCCGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECCSSCCCCCGG--GGG--------
T ss_pred             ---------------chhhhhcccccccccccccccccc--ccc-cccccccceeeccCCccCCCCc--ccc--------
Confidence                           011112222333333333333321  111 2344444444444444333221  122        


Q ss_pred             ccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcC
Q 045291          345 VSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL  424 (682)
Q Consensus       345 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l  424 (682)
                                       +++|++|++++|.++..  ..+..+++|+.|++++|.+. .++.  +..+++|++|+++++++
T Consensus       218 -----------------~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         218 -----------------LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQI  275 (384)
T ss_dssp             -----------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCC
T ss_pred             -----------------cCCCCEEECCCCCCCCc--chhhcccccchhccccCccC-CCCc--ccccccCCEeeccCccc
Confidence                             34555555555554422  23445555555555555554 2222  22455666666666655


Q ss_pred             CCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhc
Q 045291          425 QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF  504 (682)
Q Consensus       425 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  504 (682)
                      .+..  .+..++.++.+++++|.+.+.  ..+..++++++|++++|++.+..+  +..+++|++|++++|++++. + .+
T Consensus       276 ~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l-~-~l  347 (384)
T d2omza2         276 SNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-S-SL  347 (384)
T ss_dssp             CCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GG
T ss_pred             CCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC-h-hH
Confidence            5432  244566667777776666532  345666777777777777765432  66677777777777777643 2 46


Q ss_pred             cCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCC
Q 045291          505 CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN  543 (682)
Q Consensus       505 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n  543 (682)
                      .++++|++|++++|++++ ..|  ++++++|++|+|++|
T Consensus       348 ~~l~~L~~L~l~~N~l~~-l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         348 ANLTNINWLSAGHNQISD-LTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEECCCE
T ss_pred             cCCCCCCEEECCCCcCCC-Chh--hccCCCCCEeeCCCC
Confidence            777777777777777765 332  677777777777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=8.5e-27  Score=232.60  Aligned_cols=252  Identities=26%  Similarity=0.391  Sum_probs=207.3

Q ss_pred             CCcEEEcCCCCCccc--CCCCCCCCCCccEEEccC-CcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCE
Q 045291          315 KLETLFLINDSIGGP--FRLPIHPHRRLRFLDVSN-NNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQI  391 (682)
Q Consensus       315 ~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  391 (682)
                      +++.|+++++.+.+.  .+..+..+++|++|++++ |.+.|.+|..+.. +++|++|++++|.+.+..+..+..++.|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhcc
Confidence            455566666655542  345566778888888876 6787788888766 889999999999988888888888899999


Q ss_pred             EEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCc-cEEECCCCcCcccCCccccCCCCCCEEeccCC
Q 045291          392 LDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNL-KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN  470 (682)
Q Consensus       392 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  470 (682)
                      +++++|.+.+.+|..+. .+++++.+++++|.+.+..|..+..+..+ +.+++++|.+.+..+..+..+.. ..+++.++
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~  207 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSS
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            99999988877776665 78899999999998888888777777765 88999999998888888877654 47999999


Q ss_pred             cCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291          471 SLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP  550 (682)
Q Consensus       471 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  550 (682)
                      ...+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|+|++|++++ .+|..++++++|++|+|++|++++.+|
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g-~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecc-cCChHHhCCCCCCEEECcCCcccccCC
Confidence            8888888888899999999999999986654 57888999999999999987 688889999999999999999998888


Q ss_pred             hhhhcCCCCCEEEccCccCccc
Q 045291          551 HQLVELKTLEVFSVAYNNLSGE  572 (682)
Q Consensus       551 ~~l~~l~~L~~L~l~~n~l~~~  572 (682)
                      + +..+++|+.+++++|+..|.
T Consensus       286 ~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             C-STTGGGSCGGGTCSSSEEES
T ss_pred             C-cccCCCCCHHHhCCCccccC
Confidence            5 56788999999999986553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=219.47  Aligned_cols=228  Identities=22%  Similarity=0.238  Sum_probs=202.9

Q ss_pred             EEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEcc-
Q 045291          342 FLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS-  420 (682)
Q Consensus       342 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~-  420 (682)
                      .++.+++.++ .+|..+   .+++++|+|++|.+++..+..|.++++|++|++++|.+. .++...+..+..++.+... 
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccc
Confidence            4667777776 777765   357899999999999887788999999999999999997 6777777788899998775 


Q ss_pred             CCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCc
Q 045291          421 NNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI  500 (682)
Q Consensus       421 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  500 (682)
                      .+.+....+..+.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|++++..
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            45677777888999999999999999998777788888999999999999999777888999999999999999999888


Q ss_pred             chhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291          501 PVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       501 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      +.+|.++++|+.+++++|++++ ..|..|.++++|+.|++++|++.+..+..+..+++|+.|++++|++.|.++.
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhhhccccccchhhhhhccccc-cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            9999999999999999999986 7789999999999999999999999999999999999999999999998763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9e-25  Score=214.29  Aligned_cols=229  Identities=23%  Similarity=0.261  Sum_probs=204.1

Q ss_pred             EEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECC-C
Q 045291          367 SFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLE-G  445 (682)
Q Consensus       367 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~  445 (682)
                      .++.+++.++ .+|..+  .+++++|+|++|+++ .++...+.++++|++|++++|++....+..+..++.++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~i--p~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC--CCCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566777776 445443  257899999999998 8888888899999999999999999888888889999999875 5


Q ss_pred             CcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcc
Q 045291          446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI  525 (682)
Q Consensus       446 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~  525 (682)
                      +.+....+..|.++++|++|++++|.+....+..+...++|+.+++++|.++++.+.+|..+++|+.|++++|++++ ..
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~  169 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VP  169 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cc
Confidence            66666678889999999999999999987778888899999999999999998888999999999999999999986 67


Q ss_pred             hhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCCC
Q 045291          526 PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP  600 (682)
Q Consensus       526 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~  600 (682)
                      +.+|.++++|+.+++++|++++..|..|..+++|++|++++|.+....+.++..+..++.+++++||+.|+|+..
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            889999999999999999999999999999999999999999999888787888999999999999999999753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.4e-23  Score=206.57  Aligned_cols=267  Identities=20%  Similarity=0.210  Sum_probs=196.4

Q ss_pred             CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291          290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN  369 (682)
Q Consensus       290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  369 (682)
                      .++.++-++.+++ .+|..+   .+.+++|++++|+++.+.+..|..+++|++|++++|.+....|..+ ..+++|+.|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f-~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh-hCCCccCEec
Confidence            3456666666666 455542   2567788888888877776677778888888888888774334433 4478888888


Q ss_pred             ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCC--CcccccCCCCCCccEEECCCCc
Q 045291          370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ--GHMFSRNFNLTNLKWLLLEGNR  447 (682)
Q Consensus       370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~  447 (682)
                      +++|+++.....   ..+.++.|++.+|.+. .++...+.....+..++...|...  ......+..+++|+.+++++|.
T Consensus        86 l~~n~l~~l~~~---~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          86 LSKNQLKELPEK---MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CCSSCCSBCCSS---CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCCccCcCccc---hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            888887754332   2356778888888886 666666667777788887776543  2334456677888888888888


Q ss_pred             CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291          448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS  527 (682)
Q Consensus       448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~  527 (682)
                      +.. ++..+  +++|++|++++|...+..+..+.+++.+++|++++|.+++..+..+.++++|++|+|++|+++.  +|.
T Consensus       162 l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~--lp~  236 (305)
T d1xkua_         162 ITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPG  236 (305)
T ss_dssp             CCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCT
T ss_pred             ccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc--ccc
Confidence            764 33332  5788888888888887778888888888888888888888878888888889999999998874  577


Q ss_pred             hccCCCCCcEEECCCCcCCCCchhhh------hcCCCCCEEEccCccCc
Q 045291          528 TFSNLKQIESLDLSYNKLNGKMPHQL------VELKTLEVFSVAYNNLS  570 (682)
Q Consensus       528 ~~~~l~~L~~L~l~~n~l~~~~~~~l------~~l~~L~~L~l~~n~l~  570 (682)
                      ++..+++|+.|++++|+|+......|      ..+++|+.|++++|++.
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            88888899999999998886544433      34678889999999886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=5.9e-23  Score=203.70  Aligned_cols=272  Identities=22%  Similarity=0.260  Sum_probs=224.4

Q ss_pred             CCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhh
Q 045291          280 IFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIG  359 (682)
Q Consensus       280 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  359 (682)
                      .+|..+  .+++++|++++|+++ .+|+..+..+++|++|++++|.+..+.+..|..++.|++|++++|+++ .+|... 
T Consensus        24 ~lP~~l--~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~-   98 (305)
T d1xkua_          24 KVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM-   98 (305)
T ss_dssp             SCCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC-
T ss_pred             ccCCCC--CCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch-
Confidence            345544  258999999999998 555544889999999999999999988888999999999999999998 666544 


Q ss_pred             hcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCC-cCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCc
Q 045291          360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG-EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNL  438 (682)
Q Consensus       360 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  438 (682)
                        .+.+..|++.+|.+....+..+.....+..++...|.... ......+.++++|+.+++++|.+......   .+++|
T Consensus        99 --~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~---~~~~L  173 (305)
T d1xkua_          99 --PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSL  173 (305)
T ss_dssp             --CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS---CCTTC
T ss_pred             --hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc---cCCcc
Confidence              5689999999999998777788888899999998886541 22234556789999999999998864332   36789


Q ss_pred             cEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCC
Q 045291          439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN  518 (682)
Q Consensus       439 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  518 (682)
                      +.|++++|...+..+..|.+++.++.|++++|.+.+..+.++.++++|++|+|++|+++. +|..|..+++|+.|+|++|
T Consensus       174 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSS
T ss_pred             CEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-cccccccccCCCEEECCCC
Confidence            999999999998889999999999999999999998888999999999999999999985 4678999999999999999


Q ss_pred             cCCCCcchhh------ccCCCCCcEEECCCCcCC--CCchhhhhcCCCCCEEE
Q 045291          519 NISGRLIPST------FSNLKQIESLDLSYNKLN--GKMPHQLVELKTLEVFS  563 (682)
Q Consensus       519 ~~~~~~~~~~------~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~  563 (682)
                      +|+. +...+      +..+.+|+.|++++|++.  ...|..|..+.....++
T Consensus       253 ~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         253 NISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             CCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             ccCc-cChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcccc
Confidence            9985 43333      346788999999999986  35566666655544443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.6e-24  Score=204.73  Aligned_cols=204  Identities=22%  Similarity=0.206  Sum_probs=175.5

Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  441 (682)
                      ...+.+++.+++.++. +|..+.  +++++|+|++|++. .++...+.++++|++|++++|+++...  .+..+++|++|
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L   82 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL   82 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEE
T ss_pred             cCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccc--ccccccccccc
Confidence            4566778899998885 455442  57999999999998 788777778999999999999998543  35678999999


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291          442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  521 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  521 (682)
                      ++++|++.. .+..+.++++|+.|++++|.+.+..+..+..+.++++|++++|.++...+..+..+++|+.+++++|+++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            999999874 5667888999999999999998878888888999999999999999888888899999999999999998


Q ss_pred             CCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      + ..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|+|.|.|.
T Consensus       162 ~-~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         162 E-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             C-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             c-cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            6 67788999999999999999999 677778889999999999999998765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.9e-23  Score=197.49  Aligned_cols=204  Identities=23%  Similarity=0.213  Sum_probs=118.6

Q ss_pred             CCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEE
Q 045291          386 MKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGL  465 (682)
Q Consensus       386 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  465 (682)
                      ...+.+++.+++.++ .+|..+.   +++++|++++|++++..+..|.++++|++|++++|.++.. + .+..+++|++|
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            344455566666655 5554331   3566666666666655555555666666666666665532 1 23455666666


Q ss_pred             eccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcC
Q 045291          466 YLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL  545 (682)
Q Consensus       466 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  545 (682)
                      ++++|++. ..+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.++. ..+..+..+++++.+++++|++
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~-l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccce-eccccccccccchhcccccccc
Confidence            66666665 334455556666666666666665555555666666666666666654 4455555566666666666666


Q ss_pred             CCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291          546 NGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       546 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      ++..++.+..+++|++|+|++|.++ .+|+.+..+..++.+++.+|||.|+|.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            6555555666666666666666665 455545555566666666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.3e-16  Score=160.99  Aligned_cols=300  Identities=26%  Similarity=0.276  Sum_probs=154.4

Q ss_pred             CCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCC
Q 045291          135 PSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSI  214 (682)
Q Consensus       135 ~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L  214 (682)
                      .++++|+|+++.++.    +|+    ..++|++|++++|+++ .+|+.   ..+|++|++++|+++ .+ +. +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~~----lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l-~~-l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSS----LPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-AL-SD-L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSC----CCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CC-CS-C--CTTC
T ss_pred             cCCCEEEeCCCCCCC----CCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hh-hh-h--cccc
Confidence            468888888888866    764    2467888888888887 55654   457888888888876 44 21 1  2358


Q ss_pred             cEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEE
Q 045291          215 EMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFV  294 (682)
Q Consensus       215 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L  294 (682)
                      ++|++++|.++. ++  .++.+++|+.++++++.+....                                .....+..+
T Consensus       101 ~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~~~~~~~~--------------------------------~~~~~l~~l  145 (353)
T d1jl5a_         101 EYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKKLP--------------------------------DLPPSLEFI  145 (353)
T ss_dssp             CEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSCCC--------------------------------CCCTTCCEE
T ss_pred             cccccccccccc-cc--chhhhccceeeccccccccccc--------------------------------cccccccch
Confidence            888888887762 32  2455666777766666543211                                011223333


Q ss_pred             EcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCc
Q 045291          295 DLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNA  374 (682)
Q Consensus       295 ~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  374 (682)
                      .+..+...                         .  ...+..++.++.+++.+|... ..+..    ....+.+....+.
T Consensus       146 ~~~~~~~~-------------------------~--~~~l~~l~~l~~L~l~~n~~~-~~~~~----~~~~~~l~~~~~~  193 (353)
T d1jl5a_         146 AAGNNQLE-------------------------E--LPELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNI  193 (353)
T ss_dssp             ECCSSCCS-------------------------S--CCCCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSC
T ss_pred             hhcccccc-------------------------c--cccccccccceeccccccccc-ccccc----ccccccccccccc
Confidence            33333222                         1  122334455555666655544 22211    1223344444443


Q ss_pred             CCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCc
Q 045291          375 LHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ  454 (682)
Q Consensus       375 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  454 (682)
                      +. ..+ .+..++.|+.+++++|... .++.    ...++..+.+.++.+.....    ..+.+...++..+.+.+... 
T Consensus       194 ~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~l~~-  261 (353)
T d1jl5a_         194 LE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSE-  261 (353)
T ss_dssp             CS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEESC-
T ss_pred             cc-ccc-ccccccccccccccccccc-cccc----cccccccccccccccccccc----cccccccccccccccccccc-
Confidence            33 122 2445666677777666554 3332    24456666666665543211    23345555555444332100 


Q ss_pred             cccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCC
Q 045291          455 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQ  534 (682)
Q Consensus       455 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~  534 (682)
                         -.......++..+.+.+.    ...+++|++|+|++|+++. +|.   .+++|+.|+|++|+++.  +|.   .+++
T Consensus       262 ---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~~--l~~---~~~~  325 (353)
T d1jl5a_         262 ---LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAE--VPE---LPQN  325 (353)
T ss_dssp             ---CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTT
T ss_pred             ---ccchhcccccccCccccc----cccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCCc--ccc---ccCC
Confidence               012334445555544321    1224556666666665553 222   24456666666666553  332   2345


Q ss_pred             CcEEECCCCcCC
Q 045291          535 IESLDLSYNKLN  546 (682)
Q Consensus       535 L~~L~l~~n~l~  546 (682)
                      |++|++++|+++
T Consensus       326 L~~L~L~~N~L~  337 (353)
T d1jl5a_         326 LKQLHVEYNPLR  337 (353)
T ss_dssp             CCEEECCSSCCS
T ss_pred             CCEEECcCCcCC
Confidence            556666666555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.9e-19  Score=166.85  Aligned_cols=219  Identities=16%  Similarity=0.131  Sum_probs=130.2

Q ss_pred             cEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEcc
Q 045291          341 RFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS  420 (682)
Q Consensus       341 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  420 (682)
                      +.++.++..++ .+|..+   .+++++|++++|.++...+..|.++++|++|++++|.+...++...+.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666665 566544   24677777777777655555677777777777777766645555556667777777665


Q ss_pred             C-CcCCCcccccCCCCCCccEEECCCCcCcccCCc-cccCCCCCCEEeccCCcCCCCchhhhcCCC-CCCeecCCCCcCc
Q 045291          421 N-NNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLT-RLQYIIMPNNHLE  497 (682)
Q Consensus       421 ~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~  497 (682)
                      . |.+....+..|.++++|+.+++++|.+....+. .+..++.+..+...++.+....+..|..++ .++.|++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 455555556666677777777777766533221 222334444445555555544444555443 5666777777776


Q ss_pred             CCcchhccCCCCCCE-EEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEcc
Q 045291          498 GPIPVEFCQLDLLQI-LDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVA  565 (682)
Q Consensus       498 ~~~~~~~~~l~~L~~-L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  565 (682)
                      ...+..|.. ++++. +++++|+++. ..+..|.++++|+.|++++|+++...+..|.++++|+.+++.
T Consensus       167 ~i~~~~~~~-~~l~~~~~l~~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         167 EIHNCAFNG-TQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EECTTTTTT-CCEEEEECTTCTTCCC-CCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccccccc-hhhhcccccccccccc-ccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            554444433 33333 3456666664 444566777777777777777775555555555555554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=8.6e-16  Score=154.96  Aligned_cols=178  Identities=19%  Similarity=0.193  Sum_probs=95.9

Q ss_pred             CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhc-cC
Q 045291            5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASL-FP   83 (682)
Q Consensus         5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~   83 (682)
                      .++++|||+++++   ..+|+   .+++|++|+|++|+|+.+    |..   ..+|+.|++++|.++.. +    .+ ..
T Consensus        38 ~~l~~LdLs~~~L---~~lp~---~~~~L~~L~Ls~N~l~~l----p~~---~~~L~~L~l~~n~l~~l-~----~lp~~   99 (353)
T d1jl5a_          38 RQAHELELNNLGL---SSLPE---LPPHLESLVASCNSLTEL----PEL---PQSLKSLLVDNNNLKAL-S----DLPPL   99 (353)
T ss_dssp             HTCSEEECTTSCC---SCCCS---CCTTCSEEECCSSCCSSC----CCC---CTTCCEEECCSSCCSCC-C----SCCTT
T ss_pred             cCCCEEEeCCCCC---CCCCC---CCCCCCEEECCCCCCccc----ccc---hhhhhhhhhhhcccchh-h----hhccc
Confidence            3688999999987   45675   357899999999998876    544   35788888888877522 1    12 23


Q ss_pred             cceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCC
Q 045291           84 SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLV  163 (682)
Q Consensus        84 L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~  163 (682)
                      |+++++.+|.. ..+|.   ++.+++|++|+++++..  . ..+.    ....+..+.+..+....      ...+..++
T Consensus       100 L~~L~L~~n~l-~~lp~---~~~l~~L~~L~l~~~~~--~-~~~~----~~~~l~~l~~~~~~~~~------~~~l~~l~  162 (353)
T d1jl5a_         100 LEYLGVSNNQL-EKLPE---LQNSSFLKIIDVDNNSL--K-KLPD----LPPSLEFIAAGNNQLEE------LPELQNLP  162 (353)
T ss_dssp             CCEEECCSSCC-SSCCC---CTTCTTCCEEECCSSCC--S-CCCC----CCTTCCEEECCSSCCSS------CCCCTTCT
T ss_pred             ccccccccccc-ccccc---hhhhccceeeccccccc--c-cccc----ccccccchhhccccccc------cccccccc
Confidence            55555555443 33443   45566666666665322  1 1111    13455555554443311      12345555


Q ss_pred             CCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcC
Q 045291          164 HLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF  224 (682)
Q Consensus       164 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  224 (682)
                      .++.+++.+|..... +.   .....+.+...++.+. .+  ..+..++.|+.+++++|..
T Consensus       163 ~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~-~~--~~~~~l~~L~~l~l~~n~~  216 (353)
T d1jl5a_         163 FLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILE-EL--PELQNLPFLTTIYADNNLL  216 (353)
T ss_dssp             TCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-SC--CCCTTCTTCCEEECCSSCC
T ss_pred             cceeccccccccccc-cc---cccccccccccccccc-cc--ccccccccccccccccccc
Confidence            666666665554421 11   1122334444444433 22  1234455555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.4e-20  Score=196.44  Aligned_cols=407  Identities=18%  Similarity=0.123  Sum_probs=222.8

Q ss_pred             CCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCccc----Cchhh
Q 045291          108 KSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGS----LPWCL  183 (682)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~  183 (682)
                      ++|++||+++  +.+++.....+...++++++|+|++|.++....+.....+..+++|++|+|++|.++..    +...+
T Consensus         2 ~~l~~ld~~~--~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQC--EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEES--CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeC--CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            3678888888  44444333333333888888888888874311111123567788888888888887632    22223


Q ss_pred             c-CCCCCCEEeccCCcccccc---CCchhcccCCCcEEecCCCcCccccCcccc-----ccCCCCcEEEccCCccccccc
Q 045291          184 A-NMTSLRILDVSFNQLTGSI---SSSPLVHLTSIEMLILSDNHFQIPISLEPL-----FNHSRLKIFYADNNELNAEIT  254 (682)
Q Consensus       184 ~-~l~~L~~L~L~~n~l~~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~  254 (682)
                      . ...+|++|++++|.+++.-   -+..+..+++|++|++++|.++... ...+     .....................
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG-LQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhh-hhhhhhcccccccccccccccccccchhhh
Confidence            2 2347888888888886421   0234566788888888888775211 1001     001111111111111110000


Q ss_pred             ccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCC
Q 045291          255 QSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPI  334 (682)
Q Consensus       255 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  334 (682)
                                              ......+.....++.++++.+.............+                    .
T Consensus       159 ------------------------~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l--------------------~  194 (460)
T d1z7xw1         159 ------------------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL--------------------K  194 (460)
T ss_dssp             ------------------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH--------------------H
T ss_pred             ------------------------ccccccccccccccccccccccccccccccccccc--------------------c
Confidence                                    00011123344556666665554321111100000                    0


Q ss_pred             CCCCCccEEEccCCcCCCCCCh---hhhhcCCCceEEEecCCcCCc-----CCCcccCCCCCCCEEEccCCcCCCcCchh
Q 045291          335 HPHRRLRFLDVSNNNFQGHMPV---EIGDILPSLFSFNISTNALHG-----SIPSSFGNMKFLQILDLSNNHLTGEIPEY  406 (682)
Q Consensus       335 ~~~~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  406 (682)
                      ........+++..+.+......   ......+.++.+++.+|.+..     ..+........++.+++++|.+.......
T Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~  274 (460)
T d1z7xw1         195 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD  274 (460)
T ss_dssp             HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             cccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccc
Confidence            0011234455555544311100   111235667777777776532     12233445567788888877765222111


Q ss_pred             ---hhhCCCCCCEEEccCCcCCCccccc-----CCCCCCccEEECCCCcCcccCC----ccccCCCCCCEEeccCCcCCC
Q 045291          407 ---LAVGCVNLNSLALSNNNLQGHMFSR-----NFNLTNLKWLLLEGNRFVGEIP----QSLSKCSSLEGLYLNNNSLSG  474 (682)
Q Consensus       407 ---~~~~~~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~  474 (682)
                         .....+.++.+++++|.+.......     ......|+.+++++|.+.....    ..+...++|++|++++|++.+
T Consensus       275 ~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~  354 (460)
T d1z7xw1         275 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  354 (460)
T ss_dssp             HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             ccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccC
Confidence               1224677888888887775322211     1234578888888887764422    334456789999999998864


Q ss_pred             C----chhhhc-CCCCCCeecCCCCcCcCC----cchhccCCCCCCEEEccCCcCCCCcch----hhcc-CCCCCcEEEC
Q 045291          475 K----IPRWLG-NLTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGRLIP----STFS-NLKQIESLDL  540 (682)
Q Consensus       475 ~----~~~~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~----~~~~-~l~~L~~L~l  540 (682)
                      .    ++..+. ..+.|++|+|++|++++.    ++..+...++|++|+|++|+++. ...    ..+. +.+.|+.|++
T Consensus       355 ~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~-~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD-AGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH-HHHHHHHHHHTSTTCCCCEEEC
T ss_pred             cccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH-HHHHHHHHHHHhCCCccCEEEC
Confidence            2    233333 467799999999998753    33456677899999999999874 222    2232 3457999999


Q ss_pred             CCCcCCCCchhhh----hcCCCCCEE
Q 045291          541 SYNKLNGKMPHQL----VELKTLEVF  562 (682)
Q Consensus       541 ~~n~l~~~~~~~l----~~l~~L~~L  562 (682)
                      .+|.+.......+    ...|+|+.+
T Consensus       434 ~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         434 YDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             TTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            9998885544443    345677655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.6e-17  Score=151.77  Aligned_cols=187  Identities=24%  Similarity=0.324  Sum_probs=120.9

Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  441 (682)
                      +.+|+.|++.+|.++..  ..+..+++|++|++++|++. .++.  +..+++++.+++++|.++..  ..+.++++|+.+
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l  112 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc--cccccccccccccccccccc--cccccccccccc
Confidence            44666666666666533  23556666666666666665 3322  33566666666666665532  234566777777


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291          442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  521 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  521 (682)
                      +++++...+.  ..+...+.++.+.++++.+....  .+..+++|++|++++|.+.+..  .+.++++|++|++++|+++
T Consensus       113 ~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccC
Confidence            7777665432  33555677777777777765332  2566777788888777776443  3677788888888888876


Q ss_pred             CCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccC
Q 045291          522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAY  566 (682)
Q Consensus       522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  566 (682)
                      +  ++ .++++++|++|++++|+++...|  +..+++|+.|++++
T Consensus       187 ~--l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 D--IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             C--CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             C--Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            5  33 36778888888888888875432  67788888888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-19  Score=189.74  Aligned_cols=385  Identities=21%  Similarity=0.139  Sum_probs=222.0

Q ss_pred             CCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc----cCchhhcCCCCCCEEeccCCccccccC---Cchh
Q 045291          136 SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG----SLPWCLANMTSLRILDVSFNQLTGSIS---SSPL  208 (682)
Q Consensus       136 ~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~i~---~~~~  208 (682)
                      +|++||+++++++..  .+. +-+..+++++.|+|++|.++.    .+...+..+++|++|||++|.+++.-.   ...+
T Consensus         3 ~l~~ld~~~~~i~~~--~~~-~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDA--RWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHH--HHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCChH--HHH-HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            577888888777331  011 134556777888888887763    334456677778888887777752110   1111


Q ss_pred             c-ccCCCcEEecCCCcCccccC---ccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcc
Q 045291          209 V-HLTSIEMLILSDNHFQIPIS---LEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKF  284 (682)
Q Consensus       209 ~-~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~  284 (682)
                      . ..++|++|++++|.++....   ...+..+++|++|++++|.+.                                  
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~----------------------------------  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG----------------------------------  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH----------------------------------
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch----------------------------------
Confidence            1 22457777777776652210   011334455555555555443                                  


Q ss_pred             cccCCCCCEEEcCCCCCcCcCchHHHh----cCCCCcEEEcCCCCCcccC----CCCCCCCCCccEEEccCCcCCCCC--
Q 045291          285 LYHQHDLEFVDLSHIKMNGEFPTWLLE----NNAKLETLFLINDSIGGPF----RLPIHPHRRLRFLDVSNNNFQGHM--  354 (682)
Q Consensus       285 l~~~~~L~~L~ls~~~~~~~~~~~~~~----~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~n~~~~~~--  354 (682)
                                        +.....+..    ...................    ...+.....++.++++.+......  
T Consensus       126 ------------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~  187 (460)
T d1z7xw1         126 ------------------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR  187 (460)
T ss_dssp             ------------------HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             ------------------hhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence                              211111111    1111222222222111100    001112345667777766543211  


Q ss_pred             --ChhhhhcCCCceEEEecCCcCCcC----CCcccCCCCCCCEEEccCCcCCCc----CchhhhhCCCCCCEEEccCCcC
Q 045291          355 --PVEIGDILPSLFSFNISTNALHGS----IPSSFGNMKFLQILDLSNNHLTGE----IPEYLAVGCVNLNSLALSNNNL  424 (682)
Q Consensus       355 --~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l  424 (682)
                        ...+.........+++..+.+...    ....+...+.++.+++++|.+...    ...........++.+++++|.+
T Consensus       188 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i  267 (460)
T d1z7xw1         188 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  267 (460)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccc
Confidence              111222234567788887766532    112345668899999999876422    1223333567899999999988


Q ss_pred             CCcc----cccCCCCCCccEEECCCCcCcccCCc----c-ccCCCCCCEEeccCCcCCCCchh----hhcCCCCCCeecC
Q 045291          425 QGHM----FSRNFNLTNLKWLLLEGNRFVGEIPQ----S-LSKCSSLEGLYLNNNSLSGKIPR----WLGNLTRLQYIIM  491 (682)
Q Consensus       425 ~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~----~-~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~L  491 (682)
                      ....    ...+...+.++.+++++|.+......    . ......|+.+++++|.+......    .+...++|++|+|
T Consensus       268 ~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~L  347 (460)
T d1z7xw1         268 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI  347 (460)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhhe
Confidence            7432    22334578899999999988643221    1 22346899999999988755333    3455678999999


Q ss_pred             CCCcCcCCc----chhc-cCCCCCCEEEccCCcCCCC---cchhhccCCCCCcEEECCCCcCCCCchhhh----h-cCCC
Q 045291          492 PNNHLEGPI----PVEF-CQLDLLQILDISDNNISGR---LIPSTFSNLKQIESLDLSYNKLNGKMPHQL----V-ELKT  558 (682)
Q Consensus       492 ~~n~l~~~~----~~~~-~~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~-~l~~  558 (682)
                      ++|++++..    +..+ ...+.|++|+|++|+++..   .++..+..+++|++|++++|+++......+    . ....
T Consensus       348 s~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~  427 (460)
T d1z7xw1         348 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL  427 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCC
T ss_pred             eeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCc
Confidence            999987532    2333 3467799999999998741   123456677899999999999874322222    2 3347


Q ss_pred             CCEEEccCccCcccCCc
Q 045291          559 LEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       559 L~~L~l~~n~l~~~~~~  575 (682)
                      |+.|++.+|.+....+.
T Consensus       428 L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         428 LEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             CCEEECTTCCCCHHHHH
T ss_pred             cCEEECCCCCCCHHHHH
Confidence            99999999988754443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=4.2e-18  Score=155.19  Aligned_cols=176  Identities=20%  Similarity=0.220  Sum_probs=112.5

Q ss_pred             CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcc-cCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCC
Q 045291          415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVG-EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN  493 (682)
Q Consensus       415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  493 (682)
                      ++++.++++++.+ |..+  .+++++|+|++|.+++ ..+..|.++++|++|++++|.+....+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCcc-CCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3455555555533 2222  2456667777776654 3345566777777777777777766677777777777777777


Q ss_pred             CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccC
Q 045291          494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI  573 (682)
Q Consensus       494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  573 (682)
                      |+++.+.+.+|.++++|++|+|++|+|++ +.+++|..+++|++|+|++|.+....+.. .....++.+.+..+.+.|..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccc-cCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCC
Confidence            77777777777777777777777777775 56677777777777777777776432211 11123455566777777766


Q ss_pred             CcccccccccCcccccCCCCCCCCC
Q 045291          574 PEWTAQFATFNESSYEGNIFLCGLP  598 (682)
Q Consensus       574 ~~~~~~~~~l~~~~~~~n~~~c~~~  598 (682)
                      |.   .+..++..++..+.+.|.++
T Consensus       166 p~---~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         166 PS---KVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             ST---TTTTSBGGGSCTTTCCCCCC
T ss_pred             Ch---hhcCCEeeecCHhhCcCCCC
Confidence            65   33444556677777777554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=3.3e-17  Score=153.90  Aligned_cols=188  Identities=20%  Similarity=0.291  Sum_probs=128.5

Q ss_pred             CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCC
Q 045291          336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLN  415 (682)
Q Consensus       336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  415 (682)
                      .+.+|+.|++.+|.++ .++ .+. .+++|++|++++|.+++..+  +..+++++++++++|.++ .++.  +.++++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~-~l~-~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~~--l~~l~~L~  110 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSIK  110 (227)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCC
T ss_pred             HcCCcCEEECCCCCCC-cch-hHh-cCCCCcEeecCCceeecccc--cccccccccccccccccc-cccc--cccccccc
Confidence            3455666666666665 332 233 36777777777777664432  667777777777777765 4443  23577777


Q ss_pred             EEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCc
Q 045291          416 SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH  495 (682)
Q Consensus       416 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  495 (682)
                      .++++++...+..  .+...+.++.+.++++.+...  ..+.++++|++|++++|.+.+..  .+.++++|++|++++|+
T Consensus       111 ~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNK  184 (227)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccc--hhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCc
Confidence            7777777665432  244567778888887776533  34667788888888888876443  37788888888888888


Q ss_pred             CcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCC
Q 045291          496 LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY  542 (682)
Q Consensus       496 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~  542 (682)
                      +++..  .+..+++|++|+|++|++++  ++ .++++++|+.|++++
T Consensus       185 l~~l~--~l~~l~~L~~L~Ls~N~lt~--i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISDIS--PLASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCG--GGGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEE
T ss_pred             cCCCh--hhcCCCCCCEEECcCCcCCC--Cc-ccccCCCCCEEEeeC
Confidence            87643  37788888888888888875  33 377888888888863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.6e-18  Score=160.30  Aligned_cols=200  Identities=21%  Similarity=0.108  Sum_probs=119.0

Q ss_pred             CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcC-CCcccCCCCCCCEEEccC-CcCCCcCchhhhhCCCCCCE
Q 045291          339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS-IPSSFGNMKFLQILDLSN-NHLTGEIPEYLAVGCVNLNS  416 (682)
Q Consensus       339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~  416 (682)
                      ++++|++++|.++ .+|...+..+++|++|++++|.+... .+..|.+++.++++.+.. |.+. ..+...+.++++|++
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccccccccccccc
Confidence            4555555555554 34433333355555566555555432 233455566666665543 3443 444444445666666


Q ss_pred             EEccCCcCCCcccc-cCCCCCCccEEECCCCcCcccCCccccCCC-CCCEEeccCCcCCCCchhhhcCCCCCCe-ecCCC
Q 045291          417 LALSNNNLQGHMFS-RNFNLTNLKWLLLEGNRFVGEIPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLTRLQY-IIMPN  493 (682)
Q Consensus       417 L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~-L~L~~  493 (682)
                      +++++|++....+. .+..++.+..+..+++.+....+..|.+++ .++.|++++|++.+..+..+ ..++++. +++++
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~  186 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDN  186 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccc
Confidence            66666655533221 222344555555666666655556666553 67778888888874444443 3444444 45677


Q ss_pred             CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCC
Q 045291          494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY  542 (682)
Q Consensus       494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~  542 (682)
                      |.++.+.+..|.++++|++|++++|+++. ..+..|.+++.|+.+++.+
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCCC-CCSSSCTTCCEEESSSEES
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCCc-cCHHHHcCCcccccCcCCC
Confidence            88887777778889999999999999885 5566777777777766643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=2.7e-18  Score=156.51  Aligned_cols=177  Identities=18%  Similarity=0.245  Sum_probs=133.9

Q ss_pred             CEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCC-cccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEecc
Q 045291          390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG-HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN  468 (682)
Q Consensus       390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  468 (682)
                      ++++.++++++ .+|..+   .+++++|++++|+++. .....|.++++|+.|++++|.+....+..|..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            46777777776 677544   2567788888888765 345566778888888888888887778888888888888888


Q ss_pred             CCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCC
Q 045291          469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK  548 (682)
Q Consensus       469 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  548 (682)
                      +|++....+.+|.++++|++|+|++|+|+.+.+.+|..+++|++|+|++|++.......++.  ..++.+.+..+.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeC
Confidence            88888777778888889999999999998888888999999999999999987522222222  3466777788887766


Q ss_pred             chhhhhcCCCCCEEEccCccCcccCCc
Q 045291          549 MPHQLVELKTLEVFSVAYNNLSGEIPE  575 (682)
Q Consensus       549 ~~~~l~~l~~L~~L~l~~n~l~~~~~~  575 (682)
                      .|..+   ..++.++++.|.+.|..+.
T Consensus       165 ~p~~l---~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         165 APSKV---RDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             SSTTT---TTSBGGGSCTTTCCCCCC-
T ss_pred             CChhh---cCCEeeecCHhhCcCCCCC
Confidence            66544   4567789999999986664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.8e-16  Score=143.47  Aligned_cols=143  Identities=31%  Similarity=0.436  Sum_probs=78.7

Q ss_pred             CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeec
Q 045291          411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII  490 (682)
Q Consensus       411 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  490 (682)
                      +++|++|++++|++++..  .+..+++|++|++++|.+++. + .+..+++|+.|++++|.+.. ++ .+.++++++.++
T Consensus        67 l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~-~~-~l~~l~~l~~l~  140 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLY  140 (210)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCC-CG-GGGGCTTCCEEE
T ss_pred             CCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-cccccccccccccccccccc-cc-cccccccccccc
Confidence            444444444444444322  123455555555555555432 2 34555566666666655542 22 355566666666


Q ss_pred             CCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccC
Q 045291          491 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAY  566 (682)
Q Consensus       491 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  566 (682)
                      +++|.+++.  ..+..+++|+.+++++|++++  ++ .+.++++|++|++++|+++. ++ .+..+++|++|++++
T Consensus       141 ~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~--i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISD--IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccc--ccccccccccccccccccccc--cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            666666532  234556667777777776654  22 25666777777777777663 33 366667777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=7.5e-16  Score=140.90  Aligned_cols=161  Identities=28%  Similarity=0.350  Sum_probs=91.3

Q ss_pred             CCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEE
Q 045291          386 MKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGL  465 (682)
Q Consensus       386 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  465 (682)
                      ++++++|++++|.+. .++.  ...+++|++|++++|++++..+  +.++++|++|++++|.+... + .+.++++|+.|
T Consensus        39 l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccc
Confidence            344555555555544 3322  1235555555555555554332  45566666666666655432 1 35566666666


Q ss_pred             eccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcC
Q 045291          466 YLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL  545 (682)
Q Consensus       466 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  545 (682)
                      ++++|.....  ..+..+++|+.|++++|++...  ..+..+++|+.|++++|++++  ++ .++++++|++|++++|++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~--l~-~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTD--LK-PLANLTTLERLDISSNKV  184 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccC--Cc-cccCCCCCCEEECCCCCC
Confidence            6666665532  2355666677777776666532  245666777777777777664  22 366677777777777777


Q ss_pred             CCCchhhhhcCCCCCEE
Q 045291          546 NGKMPHQLVELKTLEVF  562 (682)
Q Consensus       546 ~~~~~~~l~~l~~L~~L  562 (682)
                      +.. + .+..+++|+.|
T Consensus       185 ~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         185 SDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CCC-G-GGGGCTTCSEE
T ss_pred             CCC-c-cccCCCCCCcC
Confidence            643 2 35666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=6.5e-16  Score=142.56  Aligned_cols=180  Identities=25%  Similarity=0.314  Sum_probs=141.0

Q ss_pred             EccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCc
Q 045291          344 DVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN  423 (682)
Q Consensus       344 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  423 (682)
                      .+..+.+++.++..   .+.+|+.|++++|.++...  .++.+++|++|++++|+++ .++.  +..+++|+.|++++|+
T Consensus        30 ~l~~~~~~~~~~~~---~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          30 NLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENK  101 (210)
T ss_dssp             HTTCSCTTSEECHH---HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSC
T ss_pred             HhCcCccCCccCHH---HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc--cccCcccccccccccc
Confidence            34444554444432   2568999999999988543  3778999999999999997 5554  2468999999999999


Q ss_pred             CCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchh
Q 045291          424 LQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE  503 (682)
Q Consensus       424 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  503 (682)
                      +++..  .+..+++|+.|++++|.+...  ..+..+++++.+++++|.+.+.  ..+..+++|+++++++|++++..  .
T Consensus       102 i~~l~--~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~  173 (210)
T d1h6ta2         102 VKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--P  173 (210)
T ss_dssp             CCCGG--GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--G
T ss_pred             ccccc--ccccccccccccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc--c
Confidence            88643  477889999999999987642  4577889999999999998743  34678899999999999998654  3


Q ss_pred             ccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCC
Q 045291          504 FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY  542 (682)
Q Consensus       504 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~  542 (682)
                      +.++++|+.|++++|++++  ++ .+.++++|+.|+|++
T Consensus       174 l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEE
T ss_pred             ccCCCCCCEEECCCCCCCC--Ch-hhcCCCCCCEEEccC
Confidence            7889999999999999974  44 588999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.4e-15  Score=139.14  Aligned_cols=161  Identities=28%  Similarity=0.367  Sum_probs=103.0

Q ss_pred             CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291          362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  441 (682)
                      ++++++|++++|.++..  +.++.+++|++|++++|+++ .++.  +.++++|+.|++++|.+....  .+.+++.|+.|
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc--ccCCccccccccccccccccc--ccccccccccc
Confidence            55677777777776643  23556677777777777776 3433  345777777777777665433  35567777777


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291          442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  521 (682)
Q Consensus       442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  521 (682)
                      ++++|.....  ..+..+++|+.|++++|.+.. ++ .+..+++|++|++++|++++..  .+.++++|+.|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence            7777766532  345667777777777777653 33 4666777777777777776543  3667777777777777776


Q ss_pred             CCcchhhccCCCCCcEE
Q 045291          522 GRLIPSTFSNLKQIESL  538 (682)
Q Consensus       522 ~~~~~~~~~~l~~L~~L  538 (682)
                      +  ++ .++.+++|++|
T Consensus       186 ~--i~-~l~~L~~L~~L  199 (199)
T d2omxa2         186 D--IS-VLAKLTNLESL  199 (199)
T ss_dssp             C--CG-GGGGCTTCSEE
T ss_pred             C--Cc-cccCCCCCCcC
Confidence            4  22 35666666664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.2e-16  Score=153.24  Aligned_cols=253  Identities=16%  Similarity=0.173  Sum_probs=137.3

Q ss_pred             CEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEec
Q 045291          292 EFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIS  371 (682)
Q Consensus       292 ~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  371 (682)
                      +.+|++++.+.......++.  ..+..+.+....+..... ......+|++|+++++.+.+.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            67888887765433333332  234455555544433222 222345778888887776644344455557777777777


Q ss_pred             CCcCCcCCCcccCCCCCCCEEEccCC-cCCCcCchhhhhCCCCCCEEEccCCc-CCCcccccCCCCCCccEEECCCCcCc
Q 045291          372 TNALHGSIPSSFGNMKFLQILDLSNN-HLTGEIPEYLAVGCVNLNSLALSNNN-LQGHMFSRNFNLTNLKWLLLEGNRFV  449 (682)
Q Consensus       372 ~n~i~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~  449 (682)
                      +|.+....+..+..+++|++|++++| .+++..-..+..++++|++|++++|. +++..                     
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~---------------------  138 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH---------------------  138 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH---------------------
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccccccc---------------------
Confidence            77766555556666777777777775 33322122233345666666666542 22111                     


Q ss_pred             ccCCccc-cCCCCCCEEeccCCc--CCC-CchhhhcCCCCCCeecCCCC-cCcCCcchhccCCCCCCEEEccCC-cCCCC
Q 045291          450 GEIPQSL-SKCSSLEGLYLNNNS--LSG-KIPRWLGNLTRLQYIIMPNN-HLEGPIPVEFCQLDLLQILDISDN-NISGR  523 (682)
Q Consensus       450 ~~~~~~~-~~l~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~~~~~  523 (682)
                        ....+ ..+++|+.|+++++.  +++ .+...+.++++|++|++++| .+++.....+..+++|++|++++| .+++ 
T Consensus       139 --~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~-  215 (284)
T d2astb2         139 --VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-  215 (284)
T ss_dssp             --HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-
T ss_pred             --chhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh-
Confidence              01111 123455555555432  221 12223345667777777665 355555556667777777777775 4553 


Q ss_pred             cchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          524 LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       524 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      .....++.+++|+.|+++++--.+..+.....+|+|+   +..++++...+
T Consensus       216 ~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~  263 (284)
T d2astb2         216 ETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIAR  263 (284)
T ss_dssp             GGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTC
T ss_pred             HHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCC
Confidence            3445567777888888877722222333334455554   45566664433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.9e-15  Score=146.50  Aligned_cols=182  Identities=21%  Similarity=0.204  Sum_probs=109.1

Q ss_pred             CCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCC-cCCCCCChhhhhcCCCceE
Q 045291          289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN-NFQGHMPVEIGDILPSLFS  367 (682)
Q Consensus       289 ~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~  367 (682)
                      ..|+.||++++.+.+.....++..+++|++|+++++.+.+.....+..+++|++|++++| .+++..-..+...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            467788888777765555555777788888888877776554455566778888888876 3432212233445778888


Q ss_pred             EEecCCc-CCcC-CCccc-CCCCCCCEEEccCCc--CCCcCchhhhhCCCCCCEEEccCCc-CCCcccccCCCCCCccEE
Q 045291          368 FNISTNA-LHGS-IPSSF-GNMKFLQILDLSNNH--LTGEIPEYLAVGCVNLNSLALSNNN-LQGHMFSRNFNLTNLKWL  441 (682)
Q Consensus       368 L~l~~n~-i~~~-~~~~~-~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  441 (682)
                      |++++|. ++.. ....+ ...++|+.|+++++.  ++......+...+++|++|++++|. +++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            8887763 3321 11112 234677788877652  3322222333456777777777653 555555555566667777


Q ss_pred             ECCCC-cCcccCCccccCCCCCCEEeccCC
Q 045291          442 LLEGN-RFVGEIPQSLSKCSSLEGLYLNNN  470 (682)
Q Consensus       442 ~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n  470 (682)
                      ++++| .+++.....+.++++|++|++++|
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77664 344333344555666666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-14  Score=126.49  Aligned_cols=127  Identities=16%  Similarity=0.106  Sum_probs=73.5

Q ss_pred             CCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEE
Q 045291          434 NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL  513 (682)
Q Consensus       434 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  513 (682)
                      ++.++++|++++|.++.+ +..+..+++|+.|++++|.+.. ++ .+..+++|++|++++|+++...+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            445566666666666533 4444556666666666666652 22 35566666666666666665555555566666666


Q ss_pred             EccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCc---hhhhhcCCCCCEEE
Q 045291          514 DISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM---PHQLVELKTLEVFS  563 (682)
Q Consensus       514 ~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~  563 (682)
                      ++++|+++.......+..+++|++|++++|++....   +..+..+++|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666654111134566666666666666665332   12455566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.2e-13  Score=114.35  Aligned_cols=102  Identities=23%  Similarity=0.205  Sum_probs=47.3

Q ss_pred             EEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCc
Q 045291          440 WLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  519 (682)
Q Consensus       440 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  519 (682)
                      .|++++|.++.. + .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++. + .+..+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            445555554422 2 2444455555555555554 3333444455555555555555432 1 24445555555555555


Q ss_pred             CCCCcchhhccCCCCCcEEECCCCcCC
Q 045291          520 ISGRLIPSTFSNLKQIESLDLSYNKLN  546 (682)
Q Consensus       520 ~~~~~~~~~~~~l~~L~~L~l~~n~l~  546 (682)
                      +++......+..+++|+.|++++|++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            543111233444555555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.9e-14  Score=123.10  Aligned_cols=111  Identities=24%  Similarity=0.224  Sum_probs=56.7

Q ss_pred             cCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCC
Q 045291          383 FGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSL  462 (682)
Q Consensus       383 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  462 (682)
                      |.++.++++|++++|+++ .++. .+..+++|+.|++++|++...  ..+..+++|++|++++|.+....+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            345556666666666665 4543 233456666666666665533  234455555666666655554444444445555


Q ss_pred             CEEeccCCcCCCCch-hhhcCCCCCCeecCCCCcCc
Q 045291          463 EGLYLNNNSLSGKIP-RWLGNLTRLQYIIMPNNHLE  497 (682)
Q Consensus       463 ~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~  497 (682)
                      ++|++++|.+..... ..+..+++|++|++++|+++
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc
Confidence            555555555542111 23344444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=4.3e-14  Score=141.49  Aligned_cols=249  Identities=18%  Similarity=0.217  Sum_probs=123.0

Q ss_pred             HhcCCCCcEEEcCCCCCcccC----CCCCCCCCCccEEEccCCcCCCC---CChhh------hhcCCCceEEEecCCcCC
Q 045291          310 LENNAKLETLFLINDSIGGPF----RLPIHPHRRLRFLDVSNNNFQGH---MPVEI------GDILPSLFSFNISTNALH  376 (682)
Q Consensus       310 ~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~n~~~~~---~~~~~------~~~l~~L~~L~l~~n~i~  376 (682)
                      +.....++.|++++|.+....    ...+...++|+.++++++.....   .+..+      ...+++|+.|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            456677888888877764321    22345567777777776654311   11111      111345555555555544


Q ss_pred             cC----CCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCccc-
Q 045291          377 GS----IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGE-  451 (682)
Q Consensus       377 ~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-  451 (682)
                      ..    +...+...++|++|++++|.+.......+...+   ..+         .........+.|+.+++++|.+... 
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l---~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~~  174 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL---QEL---------AVNKKAKNAPPLRSIICGRNRLENGS  174 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHH---HHH---------HHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccc---ccc---------ccccccccCcccceeecccccccccc
Confidence            32    112223344555555555543211000000000   000         0000011344566666666655422 


Q ss_pred             ---CCccccCCCCCCEEeccCCcCCCC-----chhhhcCCCCCCeecCCCCcCcCC----cchhccCCCCCCEEEccCCc
Q 045291          452 ---IPQSLSKCSSLEGLYLNNNSLSGK-----IPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNN  519 (682)
Q Consensus       452 ---~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~  519 (682)
                         +...+..++.|++|++++|.+...     +...+..+++|+.|++++|.++..    +...+...++|++|+|++|.
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence               222334456666677766666531     223345566677777777766532    23345566777777777777


Q ss_pred             CCCCc---chhhccC--CCCCcEEECCCCcCCCC----chhhhh-cCCCCCEEEccCccCc
Q 045291          520 ISGRL---IPSTFSN--LKQIESLDLSYNKLNGK----MPHQLV-ELKTLEVFSVAYNNLS  570 (682)
Q Consensus       520 ~~~~~---~~~~~~~--l~~L~~L~l~~n~l~~~----~~~~l~-~l~~L~~L~l~~n~l~  570 (682)
                      +++..   +...+..  .+.|++|++++|+|...    +...+. ..++|+.|++++|.+.
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            65310   1122222  35677777777776532    222332 4567777777777775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.5e-13  Score=111.59  Aligned_cols=103  Identities=24%  Similarity=0.361  Sum_probs=89.7

Q ss_pred             CEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCC
Q 045291          463 EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY  542 (682)
Q Consensus       463 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~  542 (682)
                      +.|++++|+++ .++ .+.++++|++|++++|++++ +|..+..+++|+.|++++|++++  ++ .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~--l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc--cC-ccccccccCeEECCC
Confidence            57999999998 444 48899999999999999985 46678999999999999999985  44 489999999999999


Q ss_pred             CcCCCCch-hhhhcCCCCCEEEccCccCcc
Q 045291          543 NKLNGKMP-HQLVELKTLEVFSVAYNNLSG  571 (682)
Q Consensus       543 n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~  571 (682)
                      |++..... ..+..+++|+.+++++|+++.
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            99996543 678899999999999999974

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.4e-13  Score=117.78  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=91.6

Q ss_pred             CCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCC-cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcE
Q 045291          459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN-HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIES  537 (682)
Q Consensus       459 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~  537 (682)
                      +...+.++.+++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|++++|+|+. +.+.+|..+++|++
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC-cccccccccccccc
Confidence            344566777877776 55667778888999999766 4887778889999999999999999986 66888999999999


Q ss_pred             EECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          538 LDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       538 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      |+|++|+++...+..+.. .+|+.|+|++|+|.|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             EECCSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGG
T ss_pred             eeccCCCCcccChhhhcc-ccccccccCCCcccCCch
Confidence            999999999665555544 479999999999987653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=5.6e-14  Score=140.60  Aligned_cols=248  Identities=16%  Similarity=0.148  Sum_probs=141.1

Q ss_pred             CCcccccCCCCCEEEcCCCCCcCcCchHH---HhcCCCCcEEEcCCCCCcccCC----------CCCCCCCCccEEEccC
Q 045291          281 FPKFLYHQHDLEFVDLSHIKMNGEFPTWL---LENNAKLETLFLINDSIGGPFR----------LPIHPHRRLRFLDVSN  347 (682)
Q Consensus       281 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~----------~~~~~~~~L~~L~l~~  347 (682)
                      +...+.....++.|++++|.+.......+   +...+.|+.++++++.......          ..+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            44556778899999999998875544433   4456889999998876543221          2245578999999999


Q ss_pred             CcCCCCCChhh---hhcCCCceEEEecCCcCCcCCCcc-------------cCCCCCCCEEEccCCcCCCcCchh---hh
Q 045291          348 NNFQGHMPVEI---GDILPSLFSFNISTNALHGSIPSS-------------FGNMKFLQILDLSNNHLTGEIPEY---LA  408 (682)
Q Consensus       348 n~~~~~~~~~~---~~~l~~L~~L~l~~n~i~~~~~~~-------------~~~l~~L~~L~l~~n~~~~~~~~~---~~  408 (682)
                      |.+.......+   ....++|+.|++++|.+.......             ....+.|+.+.+++|.+.......   ..
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            99875433222   234789999999999875221111             123455666666666554221111   11


Q ss_pred             hCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCC----chhhhcCCC
Q 045291          409 VGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLT  484 (682)
Q Consensus       409 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~  484 (682)
                      ...+.|++|++++|++......                   ..+...+..+++|+.|++++|.++..    +...+..++
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~-------------------~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIE-------------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHH-------------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             hhhhhhcccccccccccccccc-------------------cchhhhhcchhhhcccccccccccccccccccccccccc
Confidence            2344455555555544421000                   00122334455555566655554321    233445556


Q ss_pred             CCCeecCCCCcCcCCcc----hhcc--CCCCCCEEEccCCcCCCCc---chhhc-cCCCCCcEEECCCCcCCC
Q 045291          485 RLQYIIMPNNHLEGPIP----VEFC--QLDLLQILDISDNNISGRL---IPSTF-SNLKQIESLDLSYNKLNG  547 (682)
Q Consensus       485 ~L~~L~L~~n~l~~~~~----~~~~--~l~~L~~L~Ls~n~~~~~~---~~~~~-~~l~~L~~L~l~~n~l~~  547 (682)
                      +|++|+|++|.+++...    ..+.  ..+.|++|++++|+++...   ....+ .++++|+.|++++|++..
T Consensus       244 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            66666666666654322    2222  2356788888888775310   12223 246778888888888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.9e-13  Score=114.86  Aligned_cols=113  Identities=16%  Similarity=0.127  Sum_probs=95.5

Q ss_pred             CCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCc-CCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEE
Q 045291          484 TRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVF  562 (682)
Q Consensus       484 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  562 (682)
                      ...+.++.+++.+. ..|..+.++++|++|++++|+ ++. +.+.+|.++++|+.|++++|+|+.+.+..|..+++|++|
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccc-cCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            44567888888887 456778899999999998775 875 667889999999999999999998888999999999999


Q ss_pred             EccCccCcccCCcccccccccCcccccCCCCCCCCCC
Q 045291          563 SVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPL  599 (682)
Q Consensus       563 ~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  599 (682)
                      +|++|+++...+. ......++.+++.+|||.|+|..
T Consensus        86 ~Ls~N~l~~l~~~-~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          86 NLSFNALESLSWK-TVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             ECCSSCCSCCCST-TTCSCCCCEEECCSSCCCCCGGG
T ss_pred             eccCCCCcccChh-hhccccccccccCCCcccCCchH
Confidence            9999999954444 44445789999999999999964

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.2e-13  Score=125.12  Aligned_cols=15  Identities=40%  Similarity=0.363  Sum_probs=5.8

Q ss_pred             cCCCCCEEEccCccC
Q 045291          555 ELKTLEVFSVAYNNL  569 (682)
Q Consensus       555 ~l~~L~~L~l~~n~l  569 (682)
                      .+++|+.|++++|++
T Consensus       138 ~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         138 ALDKLEDLLLAGNPL  152 (198)
T ss_dssp             TTTTCSEEEECSSHH
T ss_pred             CCCccceeecCCCcc
Confidence            333333333333333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=4.5e-13  Score=121.32  Aligned_cols=152  Identities=21%  Similarity=0.186  Sum_probs=114.9

Q ss_pred             CCCCCEEEccCC--cCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCe
Q 045291          411 CVNLNSLALSNN--NLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQY  488 (682)
Q Consensus       411 ~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  488 (682)
                      ....+.+++.+.  .+. ..+..+..+++|++|++++|.+... + .+.++++|++|++++|.++ .++..+..+++|+.
T Consensus        22 ~~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~   97 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE   97 (198)
T ss_dssp             CTTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCE
T ss_pred             ccccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccc
Confidence            344566666654  222 3345677899999999999999854 3 5888999999999999998 55555566778999


Q ss_pred             ecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchh----------hhhcCCC
Q 045291          489 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH----------QLVELKT  558 (682)
Q Consensus       489 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~l~~l~~  558 (682)
                      |++++|+++..  ..+..+++|+.|++++|+++.......+..+++|+.|++++|++....+.          .+..+|+
T Consensus        98 L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~  175 (198)
T d1m9la_          98 LWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN  175 (198)
T ss_dssp             EECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSS
T ss_pred             ccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCC
Confidence            99999999864  34778899999999999998511125789999999999999988643322          2567888


Q ss_pred             CCEEEccCccCc
Q 045291          559 LEVFSVAYNNLS  570 (682)
Q Consensus       559 L~~L~l~~n~l~  570 (682)
                      |+.||  +.+++
T Consensus       176 L~~LD--~~~I~  185 (198)
T d1m9la_         176 LKKLD--GMPVD  185 (198)
T ss_dssp             CCEES--SGGGT
T ss_pred             cCEeC--CccCC
Confidence            88876  44444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1e-08  Score=88.77  Aligned_cols=86  Identities=19%  Similarity=0.078  Sum_probs=49.4

Q ss_pred             hhhhcCCCCCCeecCCCCcCcCCc--chhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch----
Q 045291          477 PRWLGNLTRLQYIIMPNNHLEGPI--PVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP----  550 (682)
Q Consensus       477 ~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----  550 (682)
                      +..+..+++|++|+|++|+|++..  +..+..+++|+.|+|++|.|+. ..+-.+.....|++|++++|++.....    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchh
Confidence            334455667777777777766543  2345566777777777777764 222233334456777777777664432    


Q ss_pred             ---hhhhcCCCCCEEE
Q 045291          551 ---HQLVELKTLEVFS  563 (682)
Q Consensus       551 ---~~l~~l~~L~~L~  563 (682)
                         ..+..+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               1244566666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.9e-08  Score=85.85  Aligned_cols=108  Identities=17%  Similarity=0.069  Sum_probs=73.2

Q ss_pred             CCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCc-chhhccCCCCCcEEEC
Q 045291          462 LEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL-IPSTFSNLKQIESLDL  540 (682)
Q Consensus       462 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~~l~~L~~L~l  540 (682)
                      .+.|+++++....    .+..+..+..+...++... .++..+..+++|++|+|++|+|+... .+..++.+++|+.|++
T Consensus        24 ~~~Ldls~l~~~~----~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          24 QQALDLKGLRSDP----DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SCCBCCCCCSSCT----TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hCeeecccCCCCc----hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence            4455555543221    2333344444544444333 34455677899999999999998621 2456788999999999


Q ss_pred             CCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291          541 SYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP  574 (682)
Q Consensus       541 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  574 (682)
                      ++|+|+...+-.......|+.+++++|++.+...
T Consensus        99 s~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          99 SGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             TTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             ccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            9999997655444455689999999999986554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.96  E-value=7.1e-06  Score=70.69  Aligned_cols=89  Identities=10%  Similarity=0.113  Sum_probs=46.4

Q ss_pred             hcCCCCCCeecCCCCcCcCC----cchhccCCCCCCEEEccCCcCCCC---cchhhccCCCCCcEEECCCCcCCCC----
Q 045291          480 LGNLTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGR---LIPSTFSNLKQIESLDLSYNKLNGK----  548 (682)
Q Consensus       480 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~----  548 (682)
                      +...++|++|+|++|.+...    +...+...+.|+.|+|++|.++..   .+..++...++|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            34445555555555555421    223344456666666666666531   1123455556677777766655432    


Q ss_pred             ---chhhhhcCCCCCEEEccCcc
Q 045291          549 ---MPHQLVELKTLEVFSVAYNN  568 (682)
Q Consensus       549 ---~~~~l~~l~~L~~L~l~~n~  568 (682)
                         +...+...++|+.|+++.+.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence               22334445667777766553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=6.5e-06  Score=70.94  Aligned_cols=18  Identities=17%  Similarity=0.324  Sum_probs=9.4

Q ss_pred             cCCCCCCCEEeCCCCCCC
Q 045291           54 LHNFTNLEYLTLDESSLH   71 (682)
Q Consensus        54 l~~l~~L~~L~L~~n~~~   71 (682)
                      +...++|++|++++|.++
T Consensus        40 L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             HTTCSCCCEEECTTSCCB
T ss_pred             HhhCCccceeeccccccc
Confidence            444455555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.62  E-value=2.5e-05  Score=67.10  Aligned_cols=49  Identities=12%  Similarity=0.165  Sum_probs=27.9

Q ss_pred             cCCCCCCCEEecCC-CCCCCccccC-ccccCCCCCCCEEeCCCCCCCcchh
Q 045291           27 MGSFPSLNTLDLSY-NNFTDIAITT-TQELHNFTNLEYLTLDESSLHISLL   75 (682)
Q Consensus        27 ~~~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~   75 (682)
                      ..+.+.|++|+|++ +.++...... ...+...++|+.|++++|.++....
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~   63 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA   63 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHH
Confidence            34567777777776 3454432111 1145566777777777777654433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.32  E-value=7.5e-05  Score=64.01  Aligned_cols=112  Identities=18%  Similarity=0.215  Sum_probs=57.2

Q ss_pred             CCCCCCEEeccC-CcCCCC----chhhhcCCCCCCeecCCCCcCcCCc----chhccCCCCCCEEEccCCcCCCC---cc
Q 045291          458 KCSSLEGLYLNN-NSLSGK----IPRWLGNLTRLQYIIMPNNHLEGPI----PVEFCQLDLLQILDISDNNISGR---LI  525 (682)
Q Consensus       458 ~l~~L~~L~l~~-n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~---~~  525 (682)
                      +.++|++|++++ +.++..    +...+...++|++|+|++|.++...    ...+...++++.+++++|.+...   .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            445555555554 233321    2223344556666666666554321    22344456677777777666421   11


Q ss_pred             hhhccCCCCCcEEECC--CCcCCC----CchhhhhcCCCCCEEEccCccC
Q 045291          526 PSTFSNLKQIESLDLS--YNKLNG----KMPHQLVELKTLEVFSVAYNNL  569 (682)
Q Consensus       526 ~~~~~~l~~L~~L~l~--~n~l~~----~~~~~l~~l~~L~~L~l~~n~l  569 (682)
                      ...+...++|++++|+  +|++..    .+...+...+.|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2445556667665543  444542    1233445567777777766644