Citrus Sinensis ID: 045299

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----

MSLSKKGTQISDTKLPSPNKATALNPNAAEFVPFSLRSSSSVGSTSATDATARFAGSGSVGKAVLDRSESSISNNSDEEAHQYWRHQLPDDITPDFKVLNEDESQGLGGLSLAGLSLHDGIEGSRFPASTGSGYVLSEQQELSPHHINGNSFAEKMRFSASSYGEDPTAANFLNLSPRPWDKQILGSDQLREGHPYNGNSRHGFVNDMTGEIGMIEDTEMNPVEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQVDGGFNQNPHSKPLSSPNLSAMDFPVLTVPDGQTGSQKYAVDDLQQTGNPFRSADKENLLMFKTSSSFPSRGATDFASAVRKLASQDSGAWKYERNGSADSTIGSSRSSNVSASAYNSGHGRGIYADRLQNRGSARTAPVWLETGEAVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIYRQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVVIY

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEc

cccccccccccccccccccccccccccHHHHccccccccccccccccccccccEEEccccccEEEcccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEccEEccccccccccccccccccEcccHccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccHHHHHHHHHHccccEccccccEEEEEEc

mslskkgtqisdtklpspnkatalnpnaaefvpfslrssssvgstsatdatarfagsgsvgkAVLDrsessisnnsdeeAHQYWRhqlpdditpdfkvlnedesqglgglslaglslhdgiegsrfpastgsgyvlseqqelsphhingnSFAEKMRFsassygedptaanflnlsprpwdkqilgsdqlreghpyngnsrhgfvndmtgeigmiedtemnpveflasqfpgfaAESLAEVYFANGCDLNLTIEMLTQLELqvdggfnqnphskplsspnlsamdfpvltvpdgqtgsqkyAVDDlqqtgnpfrsadkenllmfktsssfpsrgatDFASAVRKLAsqdsgawkyerngsadstigssrssnvsasaynsghgrgiyadrlqnrgsartapVWLETGEAVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAhgkaqesiyrqrnpvelqgngrgqdrmidlhGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVgtghhtrgsrtpvrlPIAVQRYLLeeegldytepqpgllrvviy

mslskkgtqisdtklpspnkatalnpNAAEFVPFSLRSSSSVGSTSATdatarfagsgsvgKAVLDRSESSISNNSDEEAHQYWRHQLPDDITPDFKVLNEDESQGLGGLSLAGLSLHDGIEGSRFPASTGSGYVLSEQQELSPHHINGNSFAEKMRFSASSYGEDPTAANFLNLSPRPWDKQILGSDQLREGHPyngnsrhgfvnDMTGEIGMIEDTEMNPVEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQVDGGFNQNPHSKPLSSPNLSAMDFPVLTVPDGQTGSQKYAVDDLQQTGNPFRSADKENLLMFKtsssfpsrgaTDFASAVRKLasqdsgawkyerngsadstigssrssNVSASAYNSGHGRGIYADRLQNRGSARTAPVWLETGEAVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIYRQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGtghhtrgsrtpvrlPIAVQRYLLeeegldytepqpgllrvviy

MSLSKKGTQISDTKLPSPNKATALNPNAAEFVPFslrssssvgstsatdataRFAGSGSVGKAVLDRsessisnnsdeeAHQYWRHQLPDDITPDFKVLNEDESQglgglslaglslHDGIEGSRFPASTGSGYVLSEQQELSPHHINGNSFAEKMRFSASSYGEDPTAANFLNLSPRPWDKQILGSDQLREGHPYNGNSRHGFVNDMTGEIGMIEDTEMNPVEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQVDGGFNQNPHSKPLSSPNLSAMDFPVLTVPDGQTGSQKYAVDDLQQTGNPFRSADKENLLMFKTSSSFPSRGATDFASAVRKLASQDSGAWKYERNGSADSTIGssrssnvsasaynsGHGRGIYADRLQNRGSARTAPVWLETGEAVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIYRQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVVIY

**********************************************************************************YWRH*****I***FKV***********LSLAGLSL*************************************************************************************GFVNDMTGEIGMIEDTEMNPVEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQVDG************************************************************************************************************************IYA*********RTAPVWLETGEAVANMYSELR***RDHARLRNAYFEQARQAYLIGNKALAKELSV*************************************RMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVV**

***********************LNPNAAEFVP*************************************************YWRHQLPDDITPDFKVLNE***************************************************************************************************************************FLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLEL*******************************************************************************************************************************************************MYSELREEARDHARLRNAYFEQ************AKELSVKGQLHNMQMKAAHGKAQESIYRQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTR*****VRLPIAVQRYLLEEEGLDYTEPQPGLLRVVIY

***********DTKLPSPNKATALNPNAAEFVPFS*************DATARFAGSGSVGK*****************AHQYWRHQLPDDITPDFKVLNEDESQGLGGLSLAGLSLHDGIEGSRFPASTGSGYVLSEQQELSPHHINGNSFAEKMRFSASSYGEDPTAANFLNLSPRPWDKQILGSDQLREGHPYNGNSRHGFVNDMTGEIGMIEDTEMNPVEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQVDGGFNQNPHSKPLSSPNLSAMDFPVLTVPDGQTGSQKYAVDDLQQTGNPFRSADKENLLMFKTSSSFPSRGATDFASAVRKLASQDSGAWKYERNG******************YNSGHGRGIYADRLQNRGSARTAPVWLETGEAVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNM***********SIYRQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVVIY

******************N*ATALNPNAAEFVPFS**************************************NNSDEEAHQYWRHQLPDDITPDFKVLNEDESQGLGGLSLAGLSLHDGIEGSRFPASTGSGYVLSEQQELSPH***GNSFAEKMRFSASSYGE*PTAANFLNLSPRPWDKQILGSDQLREGHPYNGNSRHGFVNDMTGEIGMIEDTEMNPVEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQVDGGFNQNPHSKPLSSPNLSAMDFPVLTVPDGQ*******************************************************************************************************TAPVWLETGEAVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIYRQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVVIY

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		574	2.2.26 [Sep-21-2011]
Q86UW6		1770	NEDD4-binding protein 2 O	yes	no	0.263	0.085	0.312	6e-13
Q9UTP4		206	Smr domain-containing pro	yes	no	0.250	0.699	0.308	2e-07

>sp\|Q86UW6\|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2	Back alignment and function desciption

 Score = 76.3 bits (186), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 9/160 (5%)

Query: 414  YSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIY 473
            Y + R EA  H + R   + +A++AY IG K +A   + +G LH  +MK A+  A   I+
Sbjct: 1619 YDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEIF 1678

Query: 474  RQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTG 533
             + N   L  N      ++DLHGLHV EA+  L   L       +  G +  + +  G G
Sbjct: 1679 EKVNASLLPQN------VLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRG 1732

Query: 534  HHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVVI 573
            +H++G     R+  AV +YL+      ++E +PG L+V++
Sbjct: 1733 NHSQGGV--ARIKPAVIKYLI-SHSFRFSEIKPGCLKVML 1769

Has 5'-polynucleotide kinase and nicking endonuclease activity. May play a role in DNA repair or recombination.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -

>sp\|Q9UTP4\|YLL3_SCHPO Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		574
359475985		1580	PREDICTED: pentatricopeptide repeat-cont	0.986	0.358	0.786	0.0
255550217		1439	pentatricopeptide repeat-containing prot	0.993	0.396	0.796	0.0
224141701		583	predicted protein [Populus trichocarpa]	1.0	0.984	0.771	0.0
224092057		581	predicted protein [Populus trichocarpa]	0.998	0.986	0.768	0.0
118489135		581	unknown [Populus trichocarpa x Populus d	0.998	0.986	0.768	0.0
356552450		572	PREDICTED: uncharacterized protein LOC10	0.989	0.993	0.743	0.0
356563954		573	PREDICTED: uncharacterized protein LOC10	0.991	0.993	0.750	0.0
296081732		524	unnamed protein product [Vitis vinifera]	0.909	0.996	0.736	0.0
356518183		1582	PREDICTED: pentatricopeptide repeat-cont	0.991	0.359	0.715	0.0
449447363		1573	PREDICTED: pentatricopeptide repeat-cont	0.989	0.361	0.698	0.0

>gi\|359475985\|ref\|XP_002281998.2\| PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/577 (78%), Positives = 505/577 (87%), Gaps = 11/577 (1%)

Query: 1   MSLSKKGTQISDTKLPSPNKATALNPNAAEFVPFSLRSSSSVGSTSATDATARFAGSGSV 60
           MSLSKKG  I++ KL S  K T LNPNAAEFVPF+LRSSS   STS  DA+ARF  SG++
Sbjct: 1   MSLSKKGNPINNIKLDSTAKVTTLNPNAAEFVPFALRSSSG--STSTGDASARFTPSGTL 58

Query: 61  GKAVLDRSESSISNNSDEEAHQYWRHQLPDDITPDFKVLNEDESQGLGGLSLAGLSLHDG 120
           GKA LDRSESSISNNSDEEAHQYWR QLPDDITPDFKV+ EDESQ LGGLSLAGLSLHD 
Sbjct: 59  GKAKLDRSESSISNNSDEEAHQYWRCQLPDDITPDFKVMGEDESQALGGLSLAGLSLHDS 118

Query: 121 IEGSRFPASTGSGYVLSEQQELSPHHINGNSFAEKMRFSASSYGEDPTAANFLNLSPRPW 180
            E SRF  S GSGY+L+EQQELSPHH+NGNSF +KMR+SAS YGEDP++A FL+L  +PW
Sbjct: 119 TETSRF--SAGSGYILNEQQELSPHHVNGNSFTDKMRYSASPYGEDPSSATFLHLPNKPW 176

Query: 181 DKQILGSDQL----REGHPYNGNSRHGFVNDMTGEIGMIEDTEMNPVEFLASQFPGFAAE 236
           DKQI+  DQL    REG PYNGNSRHGFVNDM  E  M+++T+MNP+EFLA QFPGFAAE
Sbjct: 177 DKQIVHGDQLLSNGREGTPYNGNSRHGFVNDMLNEHAMVDETDMNPLEFLALQFPGFAAE 236

Query: 237 SLAEVYFANGCDLNLTIEMLTQLELQVDGGFNQNPHSKPLSSPNLSAMDFPVLTVPDGQT 296
           SL EVYFAN CDLN+TIEMLTQLELQVDGGF+QN +SK LS+PNLS +DFP L VPDGQ 
Sbjct: 237 SLTEVYFANECDLNMTIEMLTQLELQVDGGFSQNMNSKTLSAPNLSGLDFPSLPVPDGQN 296

Query: 297 GSQKYAVDDLQQTGNPFRSADKENLLMFKTSSSFPSRGATDFASAVRKLASQDSGAWKYE 356
           G  KYA DD+QQ  NP+RS+DK+NLLMFK++SS PSRGATDFASAVRKLA+QDSG WK++
Sbjct: 297 GLPKYAGDDIQQGVNPYRSSDKDNLLMFKSNSSIPSRGATDFASAVRKLATQDSGIWKFD 356

Query: 357 RNGSADSTIGSSRSSNVSASAYNSGHGRGIYADRLQNRGSARTAPVWLETGEAVANMYSE 416
           RNG+AD  +GSSRSS+V AS+YNSGHGRG Y DRLQNRGSAR AP W+ETGEAVANMYSE
Sbjct: 357 RNGTADVNVGSSRSSHVLASSYNSGHGRGTYGDRLQNRGSARVAPAWVETGEAVANMYSE 416

Query: 417 LREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIYRQR 476
           LREEARDHARLRNAYFEQA+QAYLIGNKALAKELS+KG+LH++ MKAAHGKAQE+IYRQR
Sbjct: 417 LREEARDHARLRNAYFEQAQQAYLIGNKALAKELSLKGKLHSIHMKAAHGKAQEAIYRQR 476

Query: 477 NPV--ELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGH 534
           NPV  ELQGN RG+ RMIDLHGLHVSEAIHVLKHEL+VLRSTAR+A QRLQVYICVGTGH
Sbjct: 477 NPVSPELQGNARGE-RMIDLHGLHVSEAIHVLKHELNVLRSTARSADQRLQVYICVGTGH 535

Query: 535 HTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRV 571
           HTRGSRTP RLP+AVQRYLLEEEGLDYTEPQ GLLRV
Sbjct: 536 HTRGSRTPARLPVAVQRYLLEEEGLDYTEPQAGLLRV 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255550217\|ref\|XP_002516159.1\| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi\|223544645\|gb\|EEF46161.1\| pentatricopeptide repeat-containing protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224141701\|ref\|XP_002324203.1\| predicted protein [Populus trichocarpa] gi\|222865637\|gb\|EEF02768.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224092057\|ref\|XP_002309456.1\| predicted protein [Populus trichocarpa] gi\|222855432\|gb\|EEE92979.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|118489135\|gb\|ABK96374.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|356552450\|ref\|XP_003544580.1\| PREDICTED: uncharacterized protein LOC100799961 [Glycine max]	Back alignment and taxonomy information

>gi\|356563954\|ref\|XP_003550222.1\| PREDICTED: uncharacterized protein LOC100796128 isoform 1 [Glycine max] gi\|356563956\|ref\|XP_003550223.1\| PREDICTED: uncharacterized protein LOC100796128 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|296081732\|emb\|CBI20737.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356518183\|ref\|XP_003527761.1\| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Glycine max]	Back alignment and taxonomy information

>gi\|449447363\|ref\|XP_004141438.1\| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		574
TAIR\|locus:2057775		567	CID7 "AT2G26280" [Arabidopsis	0.977	0.989	0.617	7.6e-183
ASPGD\|ASPL0000016810		734	AN3578 [Emericella nidulans (t	0.273	0.213	0.333	5.7e-17
POMBASE\|SPAC11H11.03c		206	SPAC11H11.03c "SMR and DUF1771	0.250	0.699	0.320	5.8e-11
DICTYBASE\|DDB_G0287897		606	DDB_G0287897 "CCCH-type zinc f	0.188	0.178	0.377	3.1e-10
UNIPROTKB\|E1BIJ5		1768	N4BP2 "Uncharacterized protein	0.263	0.085	0.312	7.8e-10
RGD\|1565738		1677	N4bp2 "NEDD4 binding protein 2	0.263	0.090	0.306	2.1e-09
UNIPROTKB\|E2R8V6		1773	N4BP2 "Uncharacterized protein	0.263	0.085	0.312	2.3e-09
TAIR\|locus:2179439		175	CID6 "CTC-interacting domain 6	0.080	0.262	0.531	2.9e-09
UNIPROTKB\|F1S4H4		1406	N4BP2 "Uncharacterized protein	0.263	0.107	0.312	1.5e-08
TAIR\|locus:2178878		519	AT5G58720 "AT5G58720" [Arabido	0.250	0.277	0.329	1.7e-08

TAIR\|locus:2057775 CID7 "AT2G26280" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1774 (629.5 bits), Expect = 7.6e-183, P = 7.6e-183
 Identities = 358/580 (61%), Positives = 419/580 (72%)

Query:     1 MSLSKKGTQISDTKLPSPN-KATALNPNAAEFVPFXXXXXXXXXXXXXXXXXXRFAGSGS 59
             MSL+KK    S+ KL   + K T LNP+AAEFVPF                    A S S
Sbjct:     1 MSLTKKA---SEPKLSGTSIKPTTLNPHAAEFVPFTLRSPSSGGTSTLDTRL--LASSSS 55

Query:    60 VGKAVLDRXXXXXXXXXXXXAHQYWRHQLPDDITPDFKVLNEDE-SQXXXXXXXXXXXXH 118
             VGKAVLDR            A Q+W HQLPDDITPDF ++ +D+ S              
Sbjct:    56 VGKAVLDRTESSASHHSDEEARQFWSHQLPDDITPDFGLMTQDDNSYGSGSLSLANLSLF 115

Query:   119 DGIEGSRFPASTGSGYVLSEQQELSPHHINGNSFAEKMRFSASSYGEDPTAANFLNLSPR 178
             DG E  +FP+++G GY  S+Q  L+ H+ NGNS A+K R+  SS+GEDP   +F+ LSP+
Sbjct:   116 DGNEAEKFPSASG-GYGFSDQTGLASHNANGNSLADKSRYPISSFGEDPQRQSFMQLSPK 174

Query:   179 PWDKQILGSDQL----REGHPYNGNSRHGFVNDMTGEIGMIEDTEMNPVEFLASQFPGFA 234
             PWDKQI+ ++QL    RE +P++G SRHGFVNDM  E     D E+NPV+FLASQFPGFA
Sbjct:   175 PWDKQIMNAEQLLGNDRERNPFSGKSRHGFVNDMITESP--GDMEVNPVDFLASQFPGFA 232

Query:   235 AESLAEVYFANGCDLNLTIEMLTQLELQVDGGFNQNPHSKPLSSPNLSAMDFPVLTVPDG 294
             AESLAEVYFANGCDL LTIEMLTQLELQVDGG NQN   K  + P+L+ MDFP L++ + 
Sbjct:   233 AESLAEVYFANGCDLQLTIEMLTQLELQVDGGLNQNISPKTYAPPSLTPMDFPALSISNS 292

Query:   295 QTGSQKYAVDDLQQTGNPFRSADKENLLMFKTSSSFPSRGATDFASAVRKLASQDSGAWK 354
                  ++  DDLQQTGN ++S +K+N+  FK+  S    GA D+ SAVRKLASQDSG WK
Sbjct:   293 HGIPAQFGGDDLQQTGNHYQSPEKDNMFFFKSGPSVSQPGAIDYVSAVRKLASQDSGMWK 352

Query:   355 YERNGSADSTIGXXXXXXXXXXXXXXGHGRGIYADRLQNRGSARTAPVWLETGEAVANMY 414
             YERN SADS+IG              G GR IY+D+LQ+R   R APVW+ETG+AV NMY
Sbjct:   353 YERNDSADSSIGSSRNSGAYKS----GRGRSIYSDKLQSRAQTRPAPVWVETGDAVGNMY 408

Query:   415 SELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIYR 474
             SELREEARD+ARLRN YFEQARQAYL+GNKALAKELSVKGQLHNMQMKAAHGKAQE+IYR
Sbjct:   409 SELREEARDYARLRNVYFEQARQAYLVGNKALAKELSVKGQLHNMQMKAAHGKAQEAIYR 468

Query:   475 QRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGH 534
             QRNPV  QGN RG +RMIDLHGLHVSEA+ VLKHELSVLRSTARA  +RLQ+YICVGTGH
Sbjct:   469 QRNPVG-QGNSRGNERMIDLHGLHVSEALQVLKHELSVLRSTARATQERLQIYICVGTGH 527

Query:   535 HTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVVIY 574
             HTRGSRTP RLP+AVQRYLLEEEGLDY+EPQ GLLRV+IY
Sbjct:   528 HTRGSRTPARLPVAVQRYLLEEEGLDYSEPQAGLLRVIIY 567

GO:0003684 "damaged DNA binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0006298 "mismatch repair" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

ASPGD\|ASPL0000016810 AN3578 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

POMBASE\|SPAC11H11.03c SPAC11H11.03c "SMR and DUF1771 domain protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0287897 DDB_G0287897 "CCCH-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BIJ5 N4BP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1565738 N4bp2 "NEDD4 binding protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R8V6 N4BP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

TAIR\|locus:2179439 CID6 "CTC-interacting domain 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S4H4 N4BP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

TAIR\|locus:2178878 AT5G58720 "AT5G58720" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032297001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (575 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		574
pfam08590		66	pfam08590, DUF1771, Domain of unknown function (DU	1e-16
smart00463		80	smart00463, SMR, Small MutS-related domain	5e-11
pfam01713		80	pfam01713, Smr, Smr domain	1e-05

>gnl\|CDD\|117164 pfam08590, DUF1771, Domain of unknown function (DUF1771)	Back alignment and domain information

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 28/64 (43%), Positives = 42/64 (65%)

Query: 414 YSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIY 473
           Y  LR EA  H + RN  F++A +AY  G+KA AKELS +G+ H  + + A+ +A E+I+
Sbjct: 2   YQRLRAEADKHGQKRNELFQKAAEAYKRGDKAAAKELSEEGKKHGEKAEEANRQAAEAIF 61

Query: 474 RQRN 477
           R+ N
Sbjct: 62  RENN 65

This domain is always found adjacent to pfam01713. Length = 66

>gnl\|CDD\|214676 smart00463, SMR, Small MutS-related domain	Back alignment and domain information

>gnl\|CDD\|216658 pfam01713, Smr, Smr domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		574
smart00463		80	SMR Small MutS-related domain.	99.59
PF08590		66	DUF1771: Domain of unknown function (DUF1771); Int	99.54
PF01713		83	Smr: Smr domain; InterPro: IPR002625 This family i	99.51
KOG2401		448	consensus Predicted MutS-related protein involved	99.0
COG2840		184	Uncharacterized protein conserved in bacteria [Fun	98.8
PRK04946		181	hypothetical protein; Provisional	98.37
PRK00409		782	recombination and DNA strand exchange inhibitor pr	97.66
TIGR01069		771	mutS2 MutS2 family protein. Function of MutS2 is u	97.53
PF07145		18	PAM2: Ataxin-2 C-terminal region; InterPro: IPR009	97.46
PF02845		42	CUE: CUE domain; InterPro: IPR003892 This domain m	96.0
smart00546		43	CUE Domain that may be involved in binding ubiquit	94.32
PF03474		39	DMA: DMRTA motif; InterPro: IPR005173 This region	90.71
COG1193		753	Mismatch repair ATPase (MutS family) [DNA replicat	89.59

>smart00463 SMR Small MutS-related domain	Back alignment and domain information

Probab=99.59  E-value=4.4e-15  Score=124.26  Aligned_cols=78  Identities=31%  Similarity=0.462  Sum_probs=69.3

Q ss_pred             eeeecCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCCcccc-CCCcE
Q 045299          490 RMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTE-PQPGL  568 (574)
Q Consensus       490 ~~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~~f~E-~n~G~  568 (574)
                      ++|||||+++.||+.+|+.+|..++..    +....+.||||+|+||.+|+  ++|+++|.++|. ..+|.|.+ .+.|+
T Consensus         2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~----~~~~~~~II~G~G~~s~~g~--~~i~~~l~~~l~-~~~~~~~~~~~~G~   74 (80)
T smart00463        2 WSLDLHGLTVEEALTALDKFLNNARLK----GLEQKLVIITGKGKHSLGGK--SGVKPALKEHLR-VESFRFAEEGNSGV   74 (80)
T ss_pred             CeEEcCCCCHHHHHHHHHHHHHHHHHc----CCCceEEEEEcccCCCccch--hhHHHHHHhchh-hcccccCCCCCCeE
Confidence            689999999999999999999997642    22158999999999999887  999999999999 99999987 69999


Q ss_pred             EEEEEC
Q 045299          569 LRVVIY  574 (574)
Q Consensus       569 L~V~L~  574 (574)
                      ++|.|+
T Consensus        75 ~~v~l~   80 (80)
T smart00463       75 LVVKLK   80 (80)
T ss_pred             EEEEeC
Confidence            999873

>PF08590 DUF1771: Domain of unknown function (DUF1771); InterPro: IPR013899 This domain is almost always found adjacent to IPR002625 from INTERPRO	Back alignment and domain information

>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein	Back alignment and domain information

>KOG2401 consensus Predicted MutS-related protein involved in mismatch repair [Replication, recombination and repair]	Back alignment and domain information

>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK04946 hypothetical protein; Provisional	Back alignment and domain information

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>TIGR01069 mutS2 MutS2 family protein	Back alignment and domain information

>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2	Back alignment and domain information

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)	Back alignment and domain information

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)	Back alignment and domain information

>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []	Back alignment and domain information

>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		574
2vkc_A		135	Solution Structure Of The B3bp Smr Domain Length =		8e-07
3fau_A		82	Crystal Structure Of Human Small-Muts Related Domai		4e-04
2d9i_A		96	Solution Structure Of The Smr Domain Of Nedd4-Bindi		5e-04

>pdb|3FAU|A Chain A, Crystal Structure Of Human Small-Muts Related Domain Length = 82

Back alignment and structure

>pdb|2D9I|A Chain A, Solution Structure Of The Smr Domain Of Nedd4-Binding Protein 2 Length = 96

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		574
2vkc_A		135	NEDD4-binding protein 2; human BCL3 binding protei	6e-35
3fau_A		82	NEDD4-binding protein 2; SMR, small-MUTS related d	1e-22
2d9i_A		96	NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3	3e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} Length = 82	Back alignment and structure

>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 Length = 96	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 69/607 (11%), Positives = 162/607 (26%), Gaps = 193/607 (31%)

Query: 75  NSDEEAHQYWRHQLP---DDITPDFKVLN-EDESQGLGGLSLAG----LSLHDGIEGSR- 125
            + E  +QY +  L    D    +F   + +D  + +  LS       +   D + G+  
Sbjct: 10  ETGEHQYQY-KDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLR 66

Query: 126 -FPASTGSGYVLSEQQELSPHHINGNSFAEKMRFSASSYGE---DPTA--ANFLNLSPRP 179
            F       + L  +QE               +F  S        P+     ++    R 
Sbjct: 67  LF-------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 180 W-DKQILGSD---------QLREG----HPYNGNSRHGFVNDMTGEIG---MIEDTEMNP 222
           + D Q+             +LR+      P       G    + G  G   +  D     
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----VLG-SGKTWVALDV-CLS 173

Query: 223 VEFLASQFPGFAAESLAEVY---FANGCDLNLTIEMLTQLELQVDGGFNQNP-HSKPLSS 278
            +    +          +++     N       +EML +L  Q+D  +     HS  +  
Sbjct: 174 YKVQ-CKMDF-------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 279 PNLSAMDFPVLTVPDGQTGSQKYA-----VDDLQQTGNPFRSADKENLLMFKTSSSFPSR 333
              S        +      S+ Y      + ++Q         + +    F         
Sbjct: 226 RIHSIQAELRRLLK-----SKPYENCLLVLLNVQ---------NAKAWNAF--------- 262

Query: 334 GATDFASAVRKLA-SQDSGAWKYERNGSADSTIGSSRSSNVSASAYNSG----HGRGIYA 388
              + +   + L  ++             D  + ++ ++++S   ++        + +  
Sbjct: 263 ---NLSC--KILLTTRFKQV--------TDF-LSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 389 DRLQNRGSARTAPVWLETGEAVANMYSELREEARDH---------ARLRN--AYFEQARQ 437
                         +L+          +L  E               +R+  A ++  + 
Sbjct: 309 K-------------YLDCRP------QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 438 AYLIGNKALAK--ELSVKGQLHNMQMKAAHGKAQESIYRQRNPV---------------- 479
              +    L    E S+   L   + +    +   S++     +                
Sbjct: 350 ---VNCDKLTTIIESSLN-VLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 480 ------ELQG----NGRGQDRMIDLHGLHVSEAIHVLK----HELSVLR-STARA----- 519
                 +L        + ++  I +  +++   + +      H   V   +  +      
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 520 -AGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYL--------LEEEGLDYTEPQPG--- 567
                L  Y     GHH +    P R+ +    +L        +  +   +         
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 568 LLRVVIY 574
           L ++  Y
Sbjct: 524 LQQLKFY 530

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		574
2vkc_A		135	NEDD4-binding protein 2; human BCL3 binding protei	99.92
3fau_A		82	NEDD4-binding protein 2; SMR, small-MUTS related d	99.77
2d9i_A		96	NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3	99.71
3qd7_X		137	Uncharacterized protein YDAL; alpha/beta/alpha fol	99.13
2zqe_A		83	MUTS2 protein; alpha/beta, ATP-binding, DNA-bindin	98.79
1wgl_A		59	TOLL-interacting protein; CUE domain, structural g	96.7
2dhy_A		67	CUE domain-containing protein 1; structural genomi	95.49
1otr_A		49	Protein CUE2; protein-protein complex, cell cycle;	95.44
1jgn_B		26	PAIP2, polyadenylate-binding protein-interacting p	93.38
2rqh_A		26	G1 to S phase transition 1; protein-protein comple	92.57
1jh4_B		26	PAIP1, polyadenylate-binding protein-interacting p	92.23
1p3q_Q		54	VPS9P, vacuolar protein sorting-associated protein	88.1

>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1	Back alignment and structure

>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1	Back alignment and structure

>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}	Back alignment and structure

>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}	Back alignment and structure

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4	Back alignment and structure

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4	Back alignment and structure

>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2rqh_A G1 to S phase transition 1; protein-protein complex, GTP-binding, nucleotide-binding, Al splicing, cytoplasm, methylation, mRNA processing; NMR {Mus musculus}	Back alignment and structure

>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B	Back alignment and structure

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		574
d2d9ia1		83	d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (	3e-16

>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SMR domain-like
family: Smr domain
domain: Nedd4-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (175), Expect = 3e-16
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 491 MIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQ 550
           ++DLHGLHV EA+  L   L       +  G +  + +  G G+H++G     R+  AV 
Sbjct: 3   VLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQG--GVARIKPAVI 60

Query: 551 RYLLEEEGLDYTEPQPGLLRVVI 573
           +Y L      ++E +PG L+V++
Sbjct: 61  KY-LISHSFRFSEIKPGCLKVML 82

PyMOL of d2d9ia1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		574
d2d9ia1		83	Nedd4-binding protein 2 {Human (Homo sapiens) [Tax	99.82
d1mn3a_		54	Vacuolar protein sorting-associated protein vps9 {	91.88
d1wgla_		59	Toll-interacting protein {Human (Homo sapiens) [Ta	91.83

>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SMR domain-like
family: Smr domain
domain: Nedd4-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=156.61  Aligned_cols=82  Identities=32%  Similarity=0.604  Sum_probs=72.8

Q ss_pred             ceeeecCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCCccccCCCcE
Q 045299          489 DRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGL  568 (574)
Q Consensus       489 ~~~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~~f~E~n~G~  568 (574)
                      +++|||||+++.||+++|+.+|..++...........|+||||+|+||.++.  ++||++|.+||. +++|+|+|.++|+
T Consensus         1 q~~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~~~~l~IItG~G~hS~~g~--~~lk~~V~~~L~-~~~~~~~e~~~G~   77 (83)
T d2d9ia1           1 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGV--ARIKPAVIKYLI-SHSFRFSEIKPGC   77 (83)
T ss_dssp             CCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCT--TCHHHHHHHHHH-HTTCCEECCSTTC
T ss_pred             CCeEECCCCCHHHHHHHHHHHHHHHHHhhhhcCCceEEEEEECCCCCCCCCc--chHHHHHHHHHH-HCCCceecCCCcE
Confidence            3689999999999999999999987654333344578999999999999998  999999999999 9999999999999


Q ss_pred             EEEEE
Q 045299          569 LRVVI  573 (574)
Q Consensus       569 L~V~L  573 (574)
                      |+|.|
T Consensus        78 ~~V~l   82 (83)
T d2d9ia1          78 LKVML   82 (83)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99986

PyMOL of d2d9ia1

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure