Citrus Sinensis ID: 045304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
Protein Sequence
EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILRYRKRVKPPPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN
Secondary Structure (PSIPRED)
cccHHccccccccEEEcccccccccccHHcccccccccEEccccEEEEcccHHHHcccccccEEEccccEEEEcccHHHHHcccccEEEccccEEEEcccccccccccccEEEccccccccccccccccccccccccccEEEccccccccccccccHHcccccccEEEccccEEEEccccccccccccccEEccccEEcccccccccccccccEEEccccccEEEccHHHHcccccccEEcccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccEEccccccccccccHHHHcccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEcEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccEEEEcccccEEEEEEccccEEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEcccccccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEEEccccccccccHcHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHcccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEcHHHHHHHHccccHHHcEEcccccEEEEEEcccccEEEEEEEEcccccccccHHHHcc
Coil and Loop (DISEMBL)
eipheignlRNLELLVLSHNKlvgviptkvfnVSTLKVFEVsnnslsgslssiagvrlpnleVLRMRsnnfcgtiphfifnasklsllelgdnsfsgfipdtfgnlrnlnkVTLYnnyltsstsdlnflsslsncktltyidlsdnpldgilpgtsvgnlshsleyfympncnvsggipeeISNLTNLIIIYLggnklngsipITLSKLQKlqglsladnklegsipnnicRLTELyeldlgsnkfsrsiPACFSNLASLRtlslgsneltsipltfwNLKDILYLnfssnfltgplpleieNLKVLVGIDfsvnnfsgvipttigslkGLQYLFVGYnrlqgsipysigDLISlkslnlsnnnlsgtipvsleklsyLEDLNLSFNKLageiprggsfgnfsaesfegnellcgspnlrvppcktsthhtswkNALLLGTVLPLSTIFMIVVILLILRYrkrvkpppndanmppvatwRRFSYLELCRAtdrfsennligrggfgSVYKARIQDGMEVAVKVFHLHcsgafksfdvecn
Flexible Loop (DISEMBL)
EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSnnslsgslssiagvRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILRYrkrvkpppndanmppvaTWRRFSYLELCRATdrfsennligrggFGSVYKARIQDGMEVAVKVFHLHCsgafksfdvecn
Low Complexity Region (SEG)
EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVsnnslsgslssIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITlsklqklqglslADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIslkslnlsnnnlsGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILRYRKRVKPPPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN
Disordered region (IsUnstruct)
*****IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILRYRKRV*********PPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFD****
Disordered Region (DISOPRED)
EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPN********************LGTVLPLSTIFMIVVILLILR********************RRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN
Disordered Region (DISEMBL)
EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPP********SWKNALLLGTVLPLSTIFMIVVILLILRYRKRVKPPPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN
Disordered Region (DISPRO)
EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILRYRKRV***********VATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILRYRKRVKPPPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	540	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.992	0.530	0.379	1e-79
C0LGT6	1031	LRR receptor-like serine/	no	no	0.994	0.520	0.359	2e-75
Q9SD62	1025	Putative receptor-like pr	no	no	0.994	0.523	0.380	2e-70
Q9FL28	1173	LRR receptor-like serine/	no	no	0.975	0.449	0.339	1e-66
Q42371	976	LRR receptor-like serine/	no	no	0.968	0.535	0.318	4e-64
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.992	0.546	0.328	4e-63
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.946	0.408	0.329	2e-61
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.898	0.388	0.323	1e-60
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.95	0.465	0.306	1e-59
O49318	1124	Probable leucine-rich rep	no	no	0.938	0.451	0.310	7e-59

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  297 bits (761), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 209/551 (37%), Positives = 297/551 (53%), Gaps = 15/551 (2%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           EIP ++  L  +  L L  N   GV P  ++N+S+LK+  +  N  SG L    G+ LPN
Sbjct: 201 EIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPN 260

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L    M  N F G+IP  + N S L  L + +N+ +G IP TFGN+ NL  + L+ N L 
Sbjct: 261 LLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLG 319

Query: 121 SSTS-DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
           S +S DL FL+SL+NC  L  + +  N L G LP  S+ NLS  L    +    +SG IP
Sbjct: 320 SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLP-ISIANLSAKLVTLDLGGTLISGSIP 378

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
            +I NL NL  + L  N L+G +P +L KL  L+ LSL  N+L G IP  I  +T L  L
Sbjct: 379 YDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETL 438

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
           DL +N F   +P    N + L  L +G N+L  +IPL    ++ +L L+ S N L G LP
Sbjct: 439 DLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLP 498

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
            +I  L+ L  +    N  SG +P T+G+   ++ LF+  N   G IP  +  L+ +K +
Sbjct: 499 QDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP-DLKGLVGVKEV 557

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS-P 417
           +LSNN+LSG+IP      S LE LNLSFN L G++P  G F N +  S  GN  LCG   
Sbjct: 558 DLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIM 617

Query: 418 NLRVPPCKTST-----HHTSWKNALLLGTVLPLS---TIFMIVVILLILRYRKRVKPPPN 469
             ++ PC +        H+S    +++G  + ++    +FM  V L+ LR RK+ K   N
Sbjct: 618 GFQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNN 677

Query: 470 DANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVKVFHLHC 528
                      + SY +L  AT+ FS +N++G G FG+VYKA  + +   VAVKV ++  
Sbjct: 678 PTPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQR 737

Query: 529 SGAFKSFDVEC 539
            GA KSF  EC
Sbjct: 738 RGAMKSFMAEC 748

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  283 bits (724), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 199/553 (35%), Positives = 297/553 (53%), Gaps = 16/553 (2%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           EIP E+  L  +    ++ N   G  P  ++N+S+L+   +++NS SG+L +  G  LPN
Sbjct: 208 EIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPN 267

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL-YNNYL 119
           L  L + +N F G IP  + N S L   ++  N  SG IP +FG LRNL  + +  N+  
Sbjct: 268 LRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLG 327

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
            +S+S L F+ +++NC  L Y+D+  N L G LP  S+ NLS +L   ++    +SG IP
Sbjct: 328 NNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPA-SIANLSTTLTSLFLGQNLISGTIP 386

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
            +I NL +L  + L  N L+G +P++  KL  LQ + L  N + G IP+    +T L +L
Sbjct: 387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKL 446

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
            L SN F   IP        L  L + +N L  +IP     +  + Y++ S+NFLTG  P
Sbjct: 447 HLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFP 506

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
            E+  L++LVG+  S N  SG +P  IG    +++LF+  N   G+IP  I  L+SLK++
Sbjct: 507 EEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIP-DISRLVSLKNV 565

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS-P 417
           + SNNNLSG IP  L  L  L +LNLS NK  G +P  G F N +A S  GN  +CG   
Sbjct: 566 DFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVR 625

Query: 418 NLRVPPCKTSTHHT-----SWKNALLLGTVLPLSTIFMIVVILLILRYRKRVKPPPNDAN 472
            +++ PC            S +  ++ G  + ++++ +I+++  +  + KR K       
Sbjct: 626 EMQLKPCIVQASPRKRKPLSVRKKVVSGICIGIASLLLIIIVASLCWFMKRKKKNNASDG 685

Query: 473 MPPVAT-----WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526
            P  +T       + SY EL  AT RFS  NLIG G FG+V+K  +  +   VAVKV +L
Sbjct: 686 NPSDSTTLGMFHEKVSYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNL 745

Query: 527 HCSGAFKSFDVEC 539
              GA KSF  EC
Sbjct: 746 LKHGATKSFMAEC 758

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  266 bits (681), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 305/552 (55%), Gaps = 15/552 (2%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           EIP +I  L+ +    ++ NK  GV P  ++N+S+L    ++ NS SG+L    G  LPN
Sbjct: 216 EIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPN 275

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L++L M  N+F GTIP  + N S L  L++  N  +G IP +FG L+NL  + L NN L 
Sbjct: 276 LQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLG 335

Query: 121 S-STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
           + S+ DL+FL +L+NC  L Y+++  N L G LP   + NLS  L    +    +SG IP
Sbjct: 336 NYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLP-VFIANLSTQLTELSLGGNLISGSIP 394

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             I NL +L  + LG N L G +P +L +L +L+ + L  N L G IP+++  ++ L  L
Sbjct: 395 HGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYL 454

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
            L +N F  SIP+   + + L  L+LG+N+L  SIP     L  ++ LN S N L GPL 
Sbjct: 455 YLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLR 514

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
            +I  LK L+ +D S N  SG IP T+ +   L++L +  N   G IP  I  L  L+ L
Sbjct: 515 QDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIP-DIRGLTGLRFL 573

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS-P 417
           +LS NNLSGTIP  +   S L++LNLS N   G +P  G F N SA S  GN  LCG  P
Sbjct: 574 DLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIP 633

Query: 418 NLRVPPCKTS---THHTSWKNALLLGTVLPLSTIFMIVVILLILRYRKRVKPP-----PN 469
           +L++ PC       H +  K   +  + +  + + + + ++ +  Y+ RVK        N
Sbjct: 634 SLQLQPCSVELPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNEN 693

Query: 470 DANMPPVAT-WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527
           D +  PV + + + SY EL + T  FS +NLIG G FG+V+K  +      VA+KV +L 
Sbjct: 694 DRSFSPVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNLC 753

Query: 528 CSGAFKSFDVEC 539
             GA KSF  EC
Sbjct: 754 KRGAAKSFIAEC 765

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  254 bits (650), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 219/645 (33%), Positives = 311/645 (48%), Gaps = 118/645 (18%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           +IP E+GNL  L+ L +  NKL   IP+ +F ++ L    +S N L G +S   G  L +
Sbjct: 279 KIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGF-LES 337

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           LEVL + SNNF G  P  I N   L++L +G N+ SG +P   G L NL  ++ ++N LT
Sbjct: 338 LEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLT 397

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP-GTSVGNLS------------------ 161
                    SS+SNC  L  +DLS N + G +P G    NL+                  
Sbjct: 398 GPIP-----SSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIF 452

Query: 162 --HSLEYFYMPNCNVSGG------------------------IPEEISNLTNLIIIYLGG 195
              +LE   + + N++G                         IP EI NL +L I+YL  
Sbjct: 453 NCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHS 512

Query: 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
           N   G IP  +S L  LQGL +  N LEG IP  +  +  L  LDL +NKFS  IPA FS
Sbjct: 513 NGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS 572

Query: 256 NLASLRTLSLGSNELT-SIP-----LTFWNLKDI---------------------LYLNF 288
            L SL  LSL  N+   SIP     L+  N  DI                     LYLNF
Sbjct: 573 KLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNF 632

Query: 289 SSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGL---------------QY 333
           S+N LTG +P E+  L+++  ID S N FSG IP ++ + K +                 
Sbjct: 633 SNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDE 692

Query: 334 LFVGY----------NRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLN 383
           +F G           N   G IP S G++  L SL+LS+NNL+G IP SL  LS L+ L 
Sbjct: 693 VFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLK 752

Query: 384 LSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPC---KTSTHHTSWKNALL-- 438
           L+ N L G +P  G F N +A    GN  LCGS    + PC   + S+H +     +L  
Sbjct: 753 LASNNLKGHVPESGVFKNINASDLMGNTDLCGSKK-PLKPCTIKQKSSHFSKRTRVILII 811

Query: 439 LGTVLPLSTIFMIVVILLILRYRKRVKPPPNDANMPPVAT---WRRFSYLELCRATDRFS 495
           LG+   L  + ++V+IL   + +++     +++++P + +    +RF   EL +ATD F+
Sbjct: 812 LGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSALKLKRFEPKELEQATDSFN 871

Query: 496 ENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN 540
             N+IG     +VYK +++DG  +AVKV +L      K F  E +
Sbjct: 872 SANIIGSSSLSTVYKGQLEDGTVIAVKVLNL------KEFSAESD 910

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  246 bits (627), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 288/577 (49%), Gaps = 54/577 (9%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           +IP  I  L+ LE L+L +N+L+G IP+ +  +  LK+ +++ N LSG +  +       
Sbjct: 131 DIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWN-EV 189

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L+ L +R NN  G I   +   + L   ++ +NS +G IP+T GN      + L  N LT
Sbjct: 190 LQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLT 249

Query: 121 SSTS-DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
                D+ FL        +  + L  N L G +P  SV  L  +L    +    +SG IP
Sbjct: 250 GEIPFDIGFLQ-------VATLSLQGNQLSGKIP--SVIGLMQALAVLDLSGNLLSGSIP 300

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             + NLT    +YL  NKL GSIP  L  + KL  L L DN L G IP  + +LT+L++L
Sbjct: 301 PILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDL 360

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
           ++ +N     IP   S+  +L +L++  N+ + +IP  F  L+ + YLN SSN + GP+P
Sbjct: 361 NVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIP 420

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
           +E+  +  L  +D S N  +G+IP+++G L+ L  + +  N + G +P   G+L S+  +
Sbjct: 421 VELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEI 480

Query: 359 NLSNNNLSGTIPVSLEKLS-----YLED------------------LNLSFNKLAGEIPR 395
           +LSNN++SG IP  L +L       LE+                  LN+S N L G+IP+
Sbjct: 481 DLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIPK 540

Query: 396 GGSFGNFSAESFEGNELLCGSPNLRVPPCKTS--THHTSWKNALLLGTVLPLSTIFMIVV 453
             +F  FS +SF GN  LCGS      PC  S  T   S   A +LG  +      +I++
Sbjct: 541 NNNFSRFSPDSFIGNPGLCGS--WLNSPCHDSRRTVRVSISRAAILGIAI---GGLVILL 595

Query: 454 ILLILRYRKRVKPPPNDANMPPVATWRR------------FSYLELCRATDRFSENNLIG 501
           ++LI   R    PP  D ++    T+                Y ++ R T+  SE  +IG
Sbjct: 596 MVLIAACRPHNPPPFLDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIG 655

Query: 502 RGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVE 538
            G   +VYK  +++   VA+K  + H   + K F+ E
Sbjct: 656 HGASSTVYKCVLKNCKPVAIKRLYSHNPQSMKQFETE 692

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  243 bits (619), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 191/581 (32%), Positives = 291/581 (50%), Gaps = 45/581 (7%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVF---NVSTLKVFEVSNNSLSGSLSSIAGVRL 58
           IP E+G L  L  L L  N+L G IP ++F   + S+L+  ++SNNSL+G +       L
Sbjct: 131 IPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHL 190

Query: 59  PNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIP-DTFGNLRNLNKVTLYNN 117
             L  L + SN   GT+P  + N++ L  ++L  N  SG +P      +  L  + L  N
Sbjct: 191 KELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYN 250

Query: 118 YLTSSTSDLN---FLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV 174
           +  S  ++ N   F +SL+N   L  ++L+ N L G +  +SV +LS +L   ++    +
Sbjct: 251 HFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEIT-SSVRHLSVNLVQIHLDQNRI 309

Query: 175 SGGIPEEIS------------------------NLTNLIIIYLGGNKLNGSIPITLSKLQ 210
            G IP EIS                         L+ L  +YL  N L G IP+ L  + 
Sbjct: 310 HGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIP 369

Query: 211 KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNEL 270
           +L  L ++ N L GSIP++   L++L  L L  N  S ++P       +L  L L  N L
Sbjct: 370 RLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNL 429

Query: 271 T-SIPL-TFWNLKDI-LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS 327
           T +IP+    NL+++ LYLN SSN L+GP+PLE+  + +++ +D S N  SG IP  +GS
Sbjct: 430 TGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGS 489

Query: 328 LKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387
              L++L +  N    ++P S+G L  LK L++S N L+G IP S ++ S L+ LN SFN
Sbjct: 490 CIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFN 549

Query: 388 KLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTSTHHTSWKNALLLGTVLPLST 447
            L+G +   GSF   + ESF G+ LLCGS        K   + +     LL     P+  
Sbjct: 550 LLSGNVSDKGSFSKLTIESFLGDSLLCGSIKGMQACKKKHKYPSVLLPVLLSLIATPVLC 609

Query: 448 IFMIVVIL-------LILRYRKRVKPPPNDANMPPVATWRRFSYLELCRATDRFSENNLI 500
           +F   ++        L +  ++ V+         P   + R SY +L  AT  F+ ++LI
Sbjct: 610 VFGYPLVQRSRFGKNLTVYAKEEVEDEEKQNQNDP--KYPRISYQQLIAATGGFNASSLI 667

Query: 501 GRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFK-SFDVECN 540
           G G FG VYK  +++  +VAVKV     +  F  SF  EC 
Sbjct: 668 GSGRFGHVYKGVLRNNTKVAVKVLDPKTALEFSGSFKRECQ 708

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  237 bits (605), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 186/564 (32%), Positives = 274/564 (48%), Gaps = 53/564 (9%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           ++P EIG L  LE++ L  N+  G +P ++ N + L+  +   N LSG + S  G RL +
Sbjct: 424 KVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIG-RLKD 482

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L  L +R N   G IP  + N  ++++++L DN  SG IP +FG L  L    +YNN L 
Sbjct: 483 LTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQ 542

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEY--FYMPNCNVSGGI 178
            +  D     SL N K LT I+ S N  +G     S+  L  S  Y  F +      G I
Sbjct: 543 GNLPD-----SLINLKNLTRINFSSNKFNG-----SISPLCGSSSYLSFDVTENGFEGDI 592

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238
           P E+   TNL  + LG N+  G IP T  K+ +L  L ++ N L G IP  +    +L  
Sbjct: 593 PLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTH 652

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPL 297
           +DL +N  S  IP     L  L  L L SN+   S+P   ++L +IL L    N L G +
Sbjct: 653 IDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSI 712

Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS 357
           P EI NL+ L  ++   N  SG +P+TIG L  L  L +  N L G IP  IG L  L+S
Sbjct: 713 PQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQS 772

Query: 358 -LNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-------------------- 396
            L+LS NN +G IP ++  L  LE L+LS N+L GE+P                      
Sbjct: 773 ALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGK 832

Query: 397 --GSFGNFSAESFEGNELLCGSPNLRVPPCKTSTHHT-SWKNALLLGTVLPLSTI-FMIV 452
               F  + A++F GN  LCGSP        +    + S K  +++  +  L+ I  M++
Sbjct: 833 LKKQFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVL 892

Query: 453 VILLILRYR----KRVK------PPPNDANMPPV----ATWRRFSYLELCRATDRFSENN 498
           VI+L  +      K+V+         + ++  P+           + ++  AT   +E  
Sbjct: 893 VIILFFKQNHDLFKKVRGGNSAFSSNSSSSQAPLFSNGGAKSDIKWDDIMEATHYLNEEF 952

Query: 499 LIGRGGFGSVYKARIQDGMEVAVK 522
           +IG GG G VYKA +++G  +AVK
Sbjct: 953 MIGSGGSGKVYKAELKNGETIAVK 976

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 192/594 (32%), Positives = 287/594 (48%), Gaps = 109/594 (18%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           ++P EI  LR LE+L L  N+  G IP ++ N ++LK+ ++  N   G +    G RL  
Sbjct: 423 KLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIG-RLKE 481

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L +L +R N   G +P  + N  +L++L+L DN  SG IP +FG L+ L ++ LYNN L 
Sbjct: 482 LNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQ 541

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEY--FYMPNCNVSGGI 178
            +  D     SL + + LT I+LS N L+G     ++  L  S  Y  F + N      I
Sbjct: 542 GNLPD-----SLISLRNLTRINLSHNRLNG-----TIHPLCGSSSYLSFDVTNNGFEDEI 591

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP----------- 227
           P E+ N  NL  + LG N+L G IP TL K+++L  L ++ N L G+IP           
Sbjct: 592 PLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTH 651

Query: 228 ----NN---------ICRLTELYELDLGSNKFSRS------------------------I 250
               NN         + +L++L EL L SN+F  S                        I
Sbjct: 652 IDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSI 711

Query: 251 PACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV- 308
           P    NL +L  L+L  N+ + S+P     L  +  L  S N LTG +P+EI  L+ L  
Sbjct: 712 PQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQS 771

Query: 309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT 368
            +D S NNF+G IP+TIG+L  L+ L + +N+L G +P S+GD+ SL             
Sbjct: 772 ALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGY----------- 820

Query: 369 IPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTST 428
                        LN+SFN L G++ +   F  + A+SF GN  LCGSP  R    +++ 
Sbjct: 821 -------------LNVSFNNLGGKLKK--QFSRWPADSFLGNTGLCGSPLSRCNRVRSNN 865

Query: 429 HHT--SWKNALLLGTVLPLSTI-FMIVVILLILRYR----KRV---------KPPPNDAN 472
                S ++ +++  +  L+ I  MI+VI L  + R    K+V             + A 
Sbjct: 866 KQQGLSARSVVIISAISALTAIGLMILVIALFFKQRHDFFKKVGHGSTAYTSSSSSSQAT 925

Query: 473 MPPV----ATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVK 522
             P+    A+     + ++  AT   SE  +IG GG G VYKA +++G  VAVK
Sbjct: 926 HKPLFRNGASKSDIRWEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVK 979

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  231 bits (589), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 187/610 (30%), Positives = 288/610 (47%), Gaps = 97/610 (15%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           E+P EIG L+ L  ++L  N+  G IP ++ N ++L+   +  N L G +    G  L +
Sbjct: 232 ELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELG-DLQS 290

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           LE L +  N   GTIP  I N S    ++  +N+ +G IP   GN+  L  + L+ N LT
Sbjct: 291 LEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLT 350

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP----------------GTSVGNLSHSL 164
            +         LS  K L+ +DLS N L G +P                 +  G +   L
Sbjct: 351 GTIP-----VELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKL 405

Query: 165 EYFY------MPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLA 218
            ++       M + ++SG IP  +   +N+II+ LG N L+G+IP  ++  + L  L LA
Sbjct: 406 GWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLA 465

Query: 219 DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTF 277
            N L G  P+N+C+   +  ++LG N+F  SIP    N ++L+ L L  N  T  +P   
Sbjct: 466 RNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREI 525

Query: 278 WNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVG 337
             L  +  LN SSN LTG +P EI N K+L  +D   NNFSG +P+ +GSL  L+ L + 
Sbjct: 526 GMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLS 585

Query: 338 YNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLE-DLNLSFNKLAGEIPRG 396
            N L G+IP ++G+L  L  L +  N  +G+IP  L  L+ L+  LNLS+NKL GEIP  
Sbjct: 586 NNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPE 645

Query: 397 ----------------------GSFGNFSA-----------------------ESFEGNE 411
                                  SF N S+                        SF GNE
Sbjct: 646 LSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPLLRNISMSSFIGNE 705

Query: 412 LLCGSP------NLRVPPCKTSTHHTSWKNALLLG-TVLPLSTIFMIVVILLILRYRKRV 464
            LCG P           P +++      +++ ++  T   +  + ++++ L++   R+ V
Sbjct: 706 GLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVSLMLIALIVYLMRRPV 765

Query: 465 KPPPNDAN------------MPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKAR 512
           +   + A              PP      F++ +L  ATD F E+ ++GRG  G+VYKA 
Sbjct: 766 RTVASSAQDGQPSEMSLDIYFPPK---EGFTFQDLVAATDNFDESFVVGRGACGTVYKAV 822

Query: 513 IQDGMEVAVK 522
           +  G  +AVK
Sbjct: 823 LPAGYTLAVK 832

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  228 bits (582), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 184/593 (31%), Positives = 282/593 (47%), Gaps = 86/593 (14%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           IP +IGNL +LE L L  N LVG IP+++ N+ +LK   +  N L+G++    G +L  +
Sbjct: 269 IPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELG-KLSKV 327

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
             +    N   G IP  +   S+L LL L  N  +G IP+    LRNL K+ L  N LT 
Sbjct: 328 MEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTG 387

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
                       N  ++  + L  N L G++P   +G L   L         +SG IP  
Sbjct: 388 PIP-----PGFQNLTSMRQLQLFHNSLSGVIP-QGLG-LYSPLWVVDFSENQLSGKIPPF 440

Query: 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241
           I   +NLI++ LG N++ G+IP  + + + L  L +  N+L G  P  +C+L  L  ++L
Sbjct: 441 ICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIEL 500

Query: 242 GSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGPLPLE 300
             N+FS  +P        L+ L L +N+ +S +P     L +++  N SSN LTGP+P E
Sbjct: 501 DQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSE 560

Query: 301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLN- 359
           I N K+L  +D S N+F G +P  +GSL  L+ L +  NR  G+IP++IG+L  L  L  
Sbjct: 561 IANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQM 620

Query: 360 ------------------------------------------------LSNNNLSGTIPV 371
                                                           L+NN+LSG IP 
Sbjct: 621 GGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPT 680

Query: 372 SLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTSTHHT 431
           + E LS L   N S+N L G++P    F N +  SF GN+ LCG  +LR   C  S  H+
Sbjct: 681 TFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG-HLR--SCDPS--HS 735

Query: 432 SWKN--ALLLGTV------------LPLSTIFMIVVILLILR--------YRKRVKPPPN 469
           SW +  +L  G+             +   ++ +I +++  LR        Y    +P   
Sbjct: 736 SWPHISSLKAGSARRGRIIIIVSSVIGGISLLLIAIVVHFLRNPVEPTAPYVHDKEPFFQ 795

Query: 470 DANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVK 522
           ++++  V    RF+  ++  AT  F ++ ++GRG  G+VYKA +  G  +AVK
Sbjct: 796 ESDIYFVPK-ERFTVKDILEATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVK 847

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
255585401	843	serine-threonine protein kinase, plant-t	0.985	0.631	0.525	1e-134
255572272	1089	serine-threonine protein kinase, plant-t	0.996	0.494	0.498	1e-131
224116832	1061	predicted protein [Populus trichocarpa]	0.994	0.506	0.502	1e-131
359485451	1454	PREDICTED: LRR receptor-like serine/thre	0.990	0.367	0.497	1e-128
359485453	1202	PREDICTED: probable LRR receptor-like se	0.987	0.443	0.496	1e-126
359483675	1250	PREDICTED: LRR receptor-like serine/thre	0.990	0.428	0.488	1e-126
359483683	1228	PREDICTED: LRR receptor-like serine/thre	0.990	0.435	0.486	1e-126
359483685	1046	PREDICTED: LRR receptor-like serine/thre	0.990	0.511	0.488	1e-125
147776333	1205	hypothetical protein VITISV_000078 [Viti	0.990	0.443	0.488	1e-124
359497186	1140	PREDICTED: LRR receptor-like serine/thre	0.990	0.469	0.484	1e-123

>gi|255585401|ref|XP_002533396.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526770|gb|EEF28996.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 284/540 (52%), Positives = 360/540 (66%), Gaps = 8/540 (1%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           IP EIG L NL  L+L +N L G IP+ + N+S +K   ++ N LSG L S  G  LPNL
Sbjct: 67  IPTEIGKLSNLVHLLLRYNFLTGSIPSTLLNISAIKTISINVNQLSGHLPSTLGYGLPNL 126

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           E L +  N F GT+P  I NASKL++LE   NS SG IPDT  NL+NL ++ L +N   S
Sbjct: 127 EELYITRNQFIGTLPPSISNASKLTILESSSNSLSGPIPDTLCNLKNLKRLNLADN---S 183

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
            T +L FL+SL+ CK L  + L  NPL+  LP TS+GNLS S+EYF + +CN+ G IP E
Sbjct: 184 FTDELGFLASLARCKELRRLVLIGNPLNSTLP-TSIGNLS-SIEYFNVQSCNIKGNIPSE 241

Query: 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241
           I  L+NLI ++L  N+L GSIP+T+  LQKLQ L L  N L GSIP +IC L+ L EL L
Sbjct: 242 IGVLSNLITLHLQNNELVGSIPVTIGGLQKLQRLYLHGNLLYGSIPTDICHLSNLGELFL 301

Query: 242 GSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGPLPLE 300
            +N     +PACF +L SLR L L SN  TS IP + W+LKD+L LN SSN L+G +PL 
Sbjct: 302 SNNSLFGPLPACFGDLISLRILHLHSNNFTSGIPFSLWSLKDVLELNLSSNSLSGHIPLS 361

Query: 301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNL 360
           I NLKVL  +DFS N+ SG+IP  IGSL+ L  L + +NR +G IP   G+LISL+SL+L
Sbjct: 362 IGNLKVLTQVDFSYNSLSGIIPNAIGSLRNLMSLSLTHNRFEGPIPEPFGELISLESLDL 421

Query: 361 SNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLR 420
           S+NNLSG IP SLE+L YL+ LN+SFN L GE+P  G+F NFSA SF GN  LCGS  L 
Sbjct: 422 SSNNLSGKIPKSLEQLKYLKYLNVSFNNLDGEVPNKGAFANFSASSFLGNLALCGSRLLP 481

Query: 421 VPPCKTSTHHTSWKNA-LLLGTVLPLSTIFMIVVILLILRYRKRVKPPPNDANMPPVATW 479
           + PCK +TH  S  +  LLL  VLP ++I  I  IL+ LR +K      N  ++  V TW
Sbjct: 482 LMPCKNNTHGGSKTSTKLLLIYVLP-ASILTIAFILVFLRCQKVKLELENVMDIITVGTW 540

Query: 480 RRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539
           RR S+ EL +ATD F  +NL+G GG+GSVYK R++DG  VA+KVF+L   GAFK FD EC
Sbjct: 541 RRISFQELEQATDGFCASNLLGAGGYGSVYKGRLEDGTNVAIKVFNLGVEGAFKIFDTEC 600

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 272/546 (49%), Positives = 356/546 (65%), Gaps = 8/546 (1%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            IP EIGNL+NL+++ LS N L G IP  +FN+ST+K   +++N+L G+L +  G+ LPN
Sbjct: 303 RIPLEIGNLQNLQIVHLSFNNLNGSIPHALFNISTMKWIAMTSNNLLGNLPTSLGLHLPN 362

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L  L +  N   G IP +I NASKL++LEL  NSF+GFIPD+ G+LRNL  + L  N L+
Sbjct: 363 LIWLYLGINKLSGPIPSYISNASKLTILELPSNSFTGFIPDSLGDLRNLQTLKLGANLLS 422

Query: 121 S--STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           S  ++ +L   SSL NC+ L Y+ LS NPLDG LP  SVGNLS+SLE F   +  + G +
Sbjct: 423 SKKTSQELTIFSSLKNCQNLKYLWLSYNPLDGYLP-HSVGNLSNSLESFLASDGLIKGSV 481

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238
            E I NL++L  + LG N L G IP T+  L+ LQGL L  N L+GSIP+ +C L  LY 
Sbjct: 482 HESIGNLSSLTRLNLGNNDLTGRIPTTIGTLKHLQGLYLHGNDLDGSIPSELCDLRTLYN 541

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGPL 297
           L+L  NK S SIP CFSNL SLR L L SN   S I  T W LKDIL +N +SN+LTG L
Sbjct: 542 LELTGNKLSGSIPTCFSNLTSLRNLFLASNRFVSTISSTLWTLKDILQVNLASNYLTGSL 601

Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS 357
           P EIENL+ +  I+ S N  SG IP +IG L+ L  L++  N+LQG IP S+GD+ SL+ 
Sbjct: 602 PSEIENLRAVYMINISKNQLSGEIPISIGGLQDLAQLYLSGNKLQGPIPQSVGDIKSLEF 661

Query: 358 LNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP 417
           L+LS+NNLSG IP SL+ L YL+  N+SFN L GEIP GGSF NFSA+SF GNE LCGS 
Sbjct: 662 LDLSSNNLSGMIPKSLDNLLYLKYFNVSFNYLQGEIPEGGSFSNFSAQSFIGNEALCGSA 721

Query: 418 NLRVPPCKTSTHHTSWK--NALLLGTVLP--LSTIFMIVVILLILRYRKRVKPPPNDANM 473
            L+V PCK      +    + ++L  VLP  +  +F++  ++++ RY +R      + + 
Sbjct: 722 RLQVSPCKDDNSRATETPGSKIVLRYVLPAIVFAVFVLAFVIMLKRYCERKAKFSIEDDF 781

Query: 474 PPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFK 533
             + T RR SY EL  AT+ F E+N +G G FGSVYK  + DG  +A KVF+L    AFK
Sbjct: 782 LALTTIRRISYHELQLATNGFQESNFLGMGSFGSVYKGTLSDGTVIAAKVFNLQLERAFK 841

Query: 534 SFDVEC 539
           SFD EC
Sbjct: 842 SFDTEC 847

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116832|ref|XP_002317405.1| predicted protein [Populus trichocarpa] gi|222860470|gb|EEE98017.1| predicted protein [Populus trichocarpa]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 273/543 (50%), Positives = 344/543 (63%), Gaps = 6/543 (1%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           IP+E+GNL  L+ L L  N + G IP+  FN S L+   ++ N LSG L S  G+ LPNL
Sbjct: 275 IPNEMGNLHTLQELDLGFNNITGSIPSTFFNFSILRRVNMAYNYLSGHLPSNTGLGLPNL 334

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           E L +  N   G IP  I NASKL +L+L  NSFSG IPD  GNLRNL K+ L  N LTS
Sbjct: 335 EELYLEKNELSGPIPDSIGNASKLIVLDLSYNSFSGRIPDLLGNLRNLQKLNLAENILTS 394

Query: 122 STSDLNFLSSLS--NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
            +         S  NC++L Y+  + NPL G LP  S+GNLS SLE  Y  +C + G IP
Sbjct: 395 KSLRSELSFLSSLSNCRSLAYLRFNGNPLRGRLP-VSIGNLSASLEELYAFDCRIIGNIP 453

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             I NL+NLI + L  N+L G+IP  + +L+ LQ  SLA NKL+G IPN IC L  L  L
Sbjct: 454 RGIGNLSNLIGLILQQNELTGAIPSEIGRLKHLQDFSLASNKLQGHIPNEICHLERLSYL 513

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL 299
            L  N FS S+PAC SN+ SLR L LGSN  TSIP TFW+LKD+L +N S N LTG LPL
Sbjct: 514 YLLENGFSGSLPACLSNITSLRELYLGSNRFTSIPTTFWSLKDLLQINLSFNSLTGTLPL 573

Query: 300 EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLN 359
           EI NLKV+  IDFS N  SG IPT+I  L+ L +  +  NR+QG IP S GDL+SL+ L+
Sbjct: 574 EIGNLKVVTVIDFSSNQLSGDIPTSIADLQNLAHFSLSDNRMQGPIPSSFGDLVSLEFLD 633

Query: 360 LSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNL 419
           LS N+LSG IP SLEKL +L+  N+SFN+L GEI  GG F NFS  SF  NE LCG   +
Sbjct: 634 LSRNSLSGAIPKSLEKLVHLKTFNVSFNRLQGEILDGGPFANFSFRSFMDNEALCGPIRM 693

Query: 420 RVPPCKT-STHHTSWK-NALLLGTVLPLSTIFMIVVILLILRYRKRVKPPPNDANMP-PV 476
           +VPPCK+ STH  S +    ++  ++P     ++V+ L ++ +R+  K   +    P P 
Sbjct: 694 QVPPCKSISTHRQSKRPREFVIRYIVPAIAFIILVLALAVIIFRRSHKRKLSTQEDPLPP 753

Query: 477 ATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFD 536
           ATWR+ SY EL RAT+ F+E NL+G G  GSVYK  + DG+ +AVKVFHL   G    FD
Sbjct: 754 ATWRKISYHELYRATEGFNETNLLGTGSCGSVYKGTLSDGLCIAVKVFHLQLEGELMRFD 813

Query: 537 VEC 539
            EC
Sbjct: 814 SEC 816

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 271/545 (49%), Positives = 355/545 (65%), Gaps = 10/545 (1%)

Query: 2    IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
            IP+E+GNL NL+ L LS N L G+IP  +FN+S L+   ++ N  SGSL S  G +LP+L
Sbjct: 678  IPNELGNLINLQNLKLSENNLTGIIPEAIFNISKLQSLSLAQNHFSGSLPSSLGTQLPDL 737

Query: 62   EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
            E L +  N F G IP  I N S+L+ L++ DN F+G +P   GNLR L  + L +N LT 
Sbjct: 738  EGLAIGRNEFSGIIPMSISNMSELTELDIWDNFFTGDVPKDLGNLRRLEFLNLGSNQLTD 797

Query: 122  --STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
              S S++ FL+SL+NC  L  + + DNPL GILP  S+GNLS SLE F    C   G IP
Sbjct: 798  EHSASEVGFLTSLTNCNFLRTLWIEDNPLKGILP-NSLGNLSISLESFDASACQFRGTIP 856

Query: 180  EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
              I NLT+LI + LG N L G IP TL +L+KLQ L +A N+L GSIPN++CRL  L  L
Sbjct: 857  TGIGNLTSLISLELGDNDLTGLIPTTLGQLKKLQELGIAGNRLRGSIPNDLCRLKNLGYL 916

Query: 240  DLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGPLP 298
             L SN+ + SIP+C   L  LR L L SN L S IP + W L+ +L LN SSNFLTG LP
Sbjct: 917  FLSSNQLTGSIPSCLGYLPPLRELYLHSNALASNIPPSLWTLRGLLVLNLSSNFLTGHLP 976

Query: 299  LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
             E+ N+K +  +D S N  SG IP T+G L+ L+ L +  NRLQG IP   GDL+SLK L
Sbjct: 977  PEVGNIKSIRTLDLSKNQVSGHIPRTLGELQNLEDLSLSQNRLQGPIPLEFGDLLSLKFL 1036

Query: 359  NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPN 418
            +LS NNLSG IP SL+ L+YL+ LN+SFNKL GEIP GG F NF+AESF  NE LCG+P+
Sbjct: 1037 DLSQNNLSGVIPKSLKALTYLKYLNVSFNKLQGEIPDGGPFMNFTAESFIFNEALCGAPH 1096

Query: 419  LRVPPCKTSTHHTSWKNAL-LLGTVLP--LSTIFMIVVILLILRYRKRVK-PPPNDANMP 474
             +V  C  ST   SW+  L +L  +LP  +S I ++V ++L +R RK ++ P P D+ +P
Sbjct: 1097 FQVIACDKSTRSRSWRTKLFILKYILPPVISIITLVVFLVLWIRRRKNLEVPTPIDSWLP 1156

Query: 475  PVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKS 534
               +  + S+ +L  AT+ F E+NLIG+G    VYK  + +G+ VAVKVF+L   GAF+S
Sbjct: 1157 --GSHEKISHQQLLYATNYFGEDNLIGKGSLSMVYKGVLSNGLTVAVKVFNLEFQGAFRS 1214

Query: 535  FDVEC 539
            FD EC
Sbjct: 1215 FDSEC 1219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 271/546 (49%), Positives = 358/546 (65%), Gaps = 13/546 (2%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           IP E+GNL NL+ L L+ N L G++P  +FN+S L+V  ++ N LSGSL S  G  LPNL
Sbjct: 423 IPKELGNLVNLQFLSLNVNNLTGIVPEAIFNISKLQVLSLAGNHLSGSLPSSIGSWLPNL 482

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           E L +  N F G IP  I N S L  L++ DN F G +P   GNLR L  + L +N LT+
Sbjct: 483 EQLLIGGNEFSGIIPMSISNMSNLISLDISDNFFIGNVPKDLGNLRQLQLLGLSHNQLTN 542

Query: 122 --STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
             S S+L FL+SL+NC  L  + +SDNPL G++P  S+GNLS SLE  Y  +C + G IP
Sbjct: 543 EHSASELAFLTSLTNCIFLRTLSISDNPLKGMIP-NSLGNLSISLEIIYASDCQLRGTIP 601

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             ISNLTNLI + L  N L G IP    +LQKLQ LS++ N++ GSIP+ +C LT L  L
Sbjct: 602 TGISNLTNLIGLRLDDNDLTGLIPTPFGRLQKLQMLSISQNRIHGSIPSGLCHLTNLAFL 661

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGPLP 298
           DL SNK S +IP+C  NL  LR + L SN L S IP +  NL+ +L LN SSNFL   LP
Sbjct: 662 DLSSNKLSGTIPSCSGNLTGLRNVYLHSNGLASEIPSSLCNLRGLLVLNLSSNFLNSQLP 721

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
           L++ N+K LV +D S N FSG IP+TI  L+ L  L++ +N+LQG IP + GDL+SL+SL
Sbjct: 722 LQVGNMKSLVALDLSKNQFSGNIPSTISLLQNLLQLYLSHNKLQGHIPPNFGDLVSLESL 781

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPN 418
           +LS NNLSGTIP SLE L YLE LN+SFNKL GEIP GG F NF+AESF  N  LCG+P 
Sbjct: 782 DLSGNNLSGTIPKSLEHLKYLEYLNVSFNKLQGEIPNGGPFANFTAESFISNLALCGAPR 841

Query: 419 LRVPPCKTSTHHTSWKNALLLGTVLPLS-TIFMIVVILLILRYRKRV----KPPPNDANM 473
            +V  C+  +   +   +LLL  ++PLS ++  I++++L +++++R      P   D ++
Sbjct: 842 FQVMACEKDSRKNT--KSLLLKCIVPLSVSLSTIILVVLFVQWKRRQTKSETPIQVDLSL 899

Query: 474 PPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFK 533
           P +   R   + EL  AT+ F E+NLIG+G  G VYK  + DG+ VAVKVF+L   GAFK
Sbjct: 900 PRMH--RMIPHQELLYATNYFGEDNLIGKGSLGMVYKGVLSDGLIVAVKVFNLELQGAFK 957

Query: 534 SFDVEC 539
           SF+VEC
Sbjct: 958 SFEVEC 963

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483675|ref|XP_003632999.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 266/545 (48%), Positives = 345/545 (63%), Gaps = 10/545 (1%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           IP   GNL+ L+ L L  N L+G IP  +FN+S L+   ++ N LSG L S     LP+L
Sbjct: 452 IPTSFGNLKALKFLQLGSNNLIGTIPEDIFNISKLQTLALAQNHLSGGLPSSISTWLPDL 511

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           E L +  N F GTIP  I N SKL  L + DN F G +P    NLR L  + L  N LT 
Sbjct: 512 EGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFIGNVPKDLSNLRKLEVLNLAGNQLTD 571

Query: 122 S--TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
              TS++ FL+SL+NCK L  + +  NPL G LP  S+GNLS +LE F    C+  G IP
Sbjct: 572 EHLTSEVGFLTSLTNCKFLRTLWIDYNPLKGTLP-NSLGNLSVALESFTASACHFRGTIP 630

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             I NLTNLI + LG N L GSIP TL +LQKLQ L +A N+++GSIPN++  L  L  L
Sbjct: 631 TGIGNLTNLIWLDLGANDLTGSIPTTLGQLQKLQRLYIAGNRIQGSIPNDLFHLKNLGYL 690

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
            L SNK S SIP+CF +L +LR LSL SN L  +IP++FW+L+D+L L+ SSNFLTG LP
Sbjct: 691 HLSSNKLSGSIPSCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLLVLSLSSNFLTGNLP 750

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
            E+ N+K +  +D S N  SG IP  +G L+ L  L +  N+LQGSIP   GDL+SL+S+
Sbjct: 751 PEVGNMKSITTLDLSKNLISGYIPRRMGELQNLVNLCLSQNKLQGSIPVEFGDLLSLESM 810

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPN 418
           +LS NNLSGTIP SLE L YL+ LN+SFNKL GEIP GG F NF+AESF  NE LCG+P+
Sbjct: 811 DLSQNNLSGTIPKSLEALIYLKHLNVSFNKLQGEIPDGGPFVNFTAESFIFNEALCGAPH 870

Query: 419 LRVPPCKTSTHHTSWKNA--LLLGTVLPLSTIFMIV--VILLILRYRKRVKPPPNDANMP 474
            +V  C  + H  SWK    +L   +LP+ +I  +V  ++L I R      P P D+ +P
Sbjct: 871 FQVIACDKNNHTQSWKTKSFILKYILLPVGSIVTLVAFIVLWIRRQDNTEIPAPIDSWLP 930

Query: 475 PVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKS 534
                 + S  +L  AT+ F E+NLIG+G  G VYK  + +G+ VA+KVF+L   GA +S
Sbjct: 931 --GAHEKISQQQLLYATNDFGEDNLIGKGSLGMVYKGVLSNGLTVAIKVFNLEFQGALRS 988

Query: 535 FDVEC 539
           FD EC
Sbjct: 989 FDSEC 993

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483683|ref|XP_003633001.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 265/545 (48%), Positives = 346/545 (63%), Gaps = 10/545 (1%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           IP   GNL+ L+ L L  N L G IP  +FN+S L+   ++ N LSG L S  G  LP+L
Sbjct: 452 IPTSFGNLKALKFLQLGSNNLTGTIPEDIFNISKLQTLALAQNHLSGGLPSSIGTWLPDL 511

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           E L +  N F GTIP  I N SKL  L + DN F+G +P    NLR L  + L  N LT 
Sbjct: 512 EGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFTGNVPKDLSNLRKLEVLNLAGNQLTD 571

Query: 122 S--TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
              TS++ FL+SL+NCK L  + +  NPL G LP  S+GNLS +LE F    C+  G IP
Sbjct: 572 EHLTSEVGFLTSLTNCKFLRTLWIDYNPLKGTLP-NSLGNLSVALESFTASACHFRGTIP 630

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             I NLTNLI + LG N L GSIP TL  LQKLQ L +A N+++GSIPN++C L  L  L
Sbjct: 631 TGIGNLTNLIWLDLGANDLTGSIPTTLGHLQKLQRLYIAGNRIQGSIPNDLCHLKNLGYL 690

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
            L SNK S SIP+CF +L +LR LSL SN L  +IP++FW+L+D++ L+ SSNFLTG LP
Sbjct: 691 HLSSNKLSGSIPSCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLMVLSLSSNFLTGNLP 750

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
            E+ N+K +  +D S N  SG IP  +G L+ L  L +  N+LQGSIP   GDL+SL+S+
Sbjct: 751 PEVGNMKSITTLDLSKNLISGYIPRRMGELQNLVNLCLSQNKLQGSIPVEFGDLLSLESM 810

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPN 418
           +LS NNL GTIP SLE L YL+ LN+SFNKL GEIP GG F NF+AESF  NE LCG+P+
Sbjct: 811 DLSQNNLFGTIPKSLEALIYLKHLNVSFNKLQGEIPNGGPFVNFTAESFIFNEALCGAPH 870

Query: 419 LRVPPCKTSTHHTSWKNA--LLLGTVLPL-STIFMIVVILLILRYRKRVK-PPPNDANMP 474
            +V  C  +    SWK    +L   +LP+ S + ++  I+L +R R   + P P D+ +P
Sbjct: 871 FQVIACDKNNRTQSWKTKSFILKYILLPVGSAVTLVAFIVLWIRRRDNTEIPAPIDSWLP 930

Query: 475 PVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKS 534
                 + S  +L  AT+ F E+NLIG+G  G VYK  + +G+ VA+KVF+L   GA +S
Sbjct: 931 --GAHEKISQQQLLYATNGFGEDNLIGKGSLGMVYKGVLSNGLTVAIKVFNLEFQGALRS 988

Query: 535 FDVEC 539
           FD EC
Sbjct: 989 FDSEC 993

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483685|ref|XP_002263372.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/555 (48%), Positives = 351/555 (63%), Gaps = 20/555 (3%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKV----------FNVSTLKVFEVSNNSLSGSLS 51
           IP EIGNL  LE + LS N L+G IPT            FN+S L+   +  N LSGSL 
Sbjct: 260 IPREIGNLSKLEEIDLSENSLIGSIPTSFGNLMTLKFLSFNISKLQTLGLVQNHLSGSLP 319

Query: 52  SIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
           S  G  LP+LE L +  N F GTIP  I N SKL++L L DNSF+G +P    NL  L  
Sbjct: 320 SSIGTWLPDLEGLYIGINEFSGTIPMSISNMSKLTVLSLSDNSFTGNVPKDLCNLTKLQF 379

Query: 112 VTLYNNYLTSS--TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169
           + L  N LT     S + FL+SL+NCK L  + +  NPL G LP  S+GNL  +LE F  
Sbjct: 380 LDLAYNQLTDEHLASGVGFLTSLTNCKFLRNLWIGYNPLTGTLP-NSLGNLPIALEIFIA 438

Query: 170 PNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNN 229
             C   G IP  I NLTNLI + LG N L GSIP TL +LQKLQ LS+  N++ GSIPN+
Sbjct: 439 SACQFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGQLQKLQALSIVGNRIRGSIPND 498

Query: 230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNF 288
           +C L  L  L L  NK S SIP+CF +L +LR LSL SN L  +IP++FW+L+D+L LN 
Sbjct: 499 LCHLKNLGYLRLSYNKLSGSIPSCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLLVLNL 558

Query: 289 SSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
           SSNFLTG LP E+ N+K +  +D S N  SG IP+ +G L+ L  L +  N+LQG IP  
Sbjct: 559 SSNFLTGNLPPEVGNMKSITTLDLSKNLVSGYIPSRMGKLQNLITLSLSQNKLQGPIPVE 618

Query: 349 IGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFE 408
            GDL+SL+SL+LS NNLSGTIP +LE L YL+ LN+SFNKL GEIP GG F  F+AESF 
Sbjct: 619 FGDLVSLESLDLSQNNLSGTIPKTLEALIYLKYLNVSFNKLQGEIPNGGPFVKFTAESFM 678

Query: 409 GNELLCGSPNLRVPPCKTSTHHTSWKNA--LLLGTVLPL-STIFMIVVILLILRYRKRVK 465
            NE LCG+P+ +V  C  +    SWK    +L   +LP+ ST+ ++V I+L +R R  ++
Sbjct: 679 FNEALCGAPHFQVMACDKNNRTQSWKTKSFILKYILLPVGSTVTLVVFIVLWIRRRDNME 738

Query: 466 -PPPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVF 524
            P P D+ +P   T  + S+ +L  AT+ F E+NLIG+G  G VYK  + +G+ VA+KVF
Sbjct: 739 IPTPIDSWLP--GTHEKISHQQLLYATNDFGEDNLIGKGSQGMVYKGVLSNGLTVAIKVF 796

Query: 525 HLHCSGAFKSFDVEC 539
           +L   GA +SF+ EC
Sbjct: 797 NLEFQGALRSFNSEC 811

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/545 (48%), Positives = 348/545 (63%), Gaps = 10/545 (1%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           IP   GNL+ L+ L L  N L G +P  +FN+S L+   +  N LSGSL S  G  LP+L
Sbjct: 429 IPTSFGNLKALKFLNLGINFLTGTVPEAIFNISELQNLALVQNHLSGSLPSSIGTWLPDL 488

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           E L + +N F GTIP  I N SKL++L L DNSF+G +P    NL  L  + L +N LT 
Sbjct: 489 EGLYIGANEFSGTIPMSISNMSKLTVLSLSDNSFTGNVPKDLCNLTKLKFLNLAHNQLTD 548

Query: 122 S--TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
               S + FL+SL+NCK L Y+ +  NPL G LP  S+GNL  +LE F    C   G IP
Sbjct: 549 EHLASGVGFLTSLTNCKFLRYLWIGYNPLKGTLP-NSLGNLPIALESFTAYACQFRGTIP 607

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             I NLTNLI + LG N L GSIP TL +LQKLQ L +A N++ GSIPN++C L  L  L
Sbjct: 608 TGIGNLTNLIWLDLGANDLTGSIPTTLGRLQKLQRLHIAGNRIRGSIPNDLCHLKNLGYL 667

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
            L SNK S S P+CF +L +LR L L SN L  +IP + W+L+D+L LN SSNFLTG LP
Sbjct: 668 GLSSNKLSGSTPSCFGDLLALRELFLDSNALAFNIPTSLWSLRDLLVLNLSSNFLTGNLP 727

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
            E+ N+K +  +D S N  SG IP+ +G L+ L  L +  NRLQG I    GDL+SL+SL
Sbjct: 728 PEVGNMKSITTLDLSKNLVSGYIPSRMGKLQYLITLSLSQNRLQGPIXVEFGDLVSLESL 787

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPN 418
           +LS+NNLSGTIP SLE L YL+ LN+SFNKL GEIP GG F  F+AESF  NE LCG+P+
Sbjct: 788 DLSHNNLSGTIPKSLEALIYLKYLNVSFNKLQGEIPNGGPFVKFTAESFMFNEALCGAPH 847

Query: 419 LRVPPCKTSTHHTSWKNA--LLLGTVLPL-STIFMIVVILLILRYRKRVK-PPPNDANMP 474
            +V  C  +    SWK    +L   +LP+ ST+ ++V I+L +R R  ++ P P D+ + 
Sbjct: 848 FQVMACDKNNRTQSWKTKSFILKYILLPVGSTVTLVVFIVLWIRRRDNMEIPTPIDSWL- 906

Query: 475 PVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKS 534
            + T  + S+ +L  AT+ F E+NLIG+G  G VYK  + +G+ VA+KVF+L   GA +S
Sbjct: 907 -LGTHEKISHQQLLYATNDFGEDNLIGKGSQGMVYKGVLSNGLNVAIKVFNLEFQGALRS 965

Query: 535 FDVEC 539
           FD EC
Sbjct: 966 FDSEC 970

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 264/545 (48%), Positives = 345/545 (63%), Gaps = 10/545 (1%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           IP   GNL+ L+ L L  N L G +P  +FN+S L+   +  N LSGSL S  G  LP+L
Sbjct: 364 IPTSFGNLKALKFLNLGINNLTGTVPEAIFNISKLQSLAMVKNHLSGSLPSSIGTWLPDL 423

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           E L +  N F G IP  I N SKL++L L  NSF+G +P   GNL  L  + L  N LT 
Sbjct: 424 EGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFTGNVPKDLGNLTKLKVLDLAGNQLTD 483

Query: 122 S--TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
               S++ FL+SL+NCK L  + + + P  G LP  S+GNL  +LE F    C   G IP
Sbjct: 484 EHVASEVGFLTSLTNCKFLKNLWIGNIPFKGTLP-NSLGNLPIALESFIASACQFRGTIP 542

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             I NLTNLI + LG N L GSIP TL +LQKLQ L +A N++ GSIPN++C L +L  L
Sbjct: 543 TGIGNLTNLIRLDLGANDLTGSIPTTLGQLQKLQWLYIAGNRIRGSIPNDLCHLKDLGYL 602

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
            L SNK S SIP+CF +L +L+ L L SN L  +IP + W+L+D+L LN SSNFLTG LP
Sbjct: 603 FLSSNKLSGSIPSCFGDLLALQELFLDSNVLAFNIPTSLWSLRDLLALNLSSNFLTGNLP 662

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
            E+ N+K +  +D S N  SG IP+ +G L+ L  L +  NRLQG IP   GDL+SL+SL
Sbjct: 663 PEVGNMKSITTLDLSKNLVSGYIPSKMGKLQSLITLSLSQNRLQGPIPIEFGDLVSLESL 722

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPN 418
           +LS NNLSGTIP SLE L YL+ LN+S NKL GEIP GG F NF+AESF  NE LCG+P+
Sbjct: 723 DLSQNNLSGTIPKSLEALIYLKYLNVSLNKLQGEIPNGGPFINFTAESFMFNEALCGAPH 782

Query: 419 LRVPPCKTSTHHTSWKNA--LLLGTVLPLSTIFMIVV-ILLILRYRKRVK-PPPNDANMP 474
            +V  C  +    SWK    +L   +LP+ +I  +VV I+L +R R  ++ P P D+ +P
Sbjct: 783 FQVMACDKNNRTQSWKTKSFILKYILLPVGSIVTLVVFIVLWIRRRDNMEIPTPIDSWLP 842

Query: 475 PVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKS 534
              T  + S+ +L  AT+ F E+NLIG+G  G VYK  + +G+ VA+KVF+L   GA +S
Sbjct: 843 --GTHEKISHQQLLYATNDFGEDNLIGKGSQGMVYKGVLSNGLTVAIKVFNLEFQGALRS 900

Query: 535 FDVEC 539
           FD EC
Sbjct: 901 FDSEC 905

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.985	0.519	0.375	3.6e-82
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.985	0.654	0.362	1.1e-78
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.994	0.523	0.351	4e-74
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.994	0.520	0.334	1.6e-71
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.992	0.530	0.348	1.8e-71
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.994	0.532	0.327	2.7e-67
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.994	0.531	0.313	1.8e-63
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.727	0.314	0.347	4.1e-55
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.948	0.436	0.300	4.8e-55
TAIR|locus:2092810	1164	BRL3 "BRI1-like 3" [Arabidopsi	0.755	0.350	0.311	2.5e-42

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 204/544 (37%), Positives = 285/544 (52%)

Query:     2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNL 61
             IP  +G L +L  + L  N L G+IP  ++N+S+L+ F V            A   L  L
Sbjct:   216 IPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLL 275

Query:    62 EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN-YLT 120
             EV+ M +N F G IP  + NAS L+++++  N FSG I   FG LRNL ++ L+ N + T
Sbjct:   276 EVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQT 335

Query:   121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
                 D  F+S L+NC  L  ++L +N L G+LP  S  NLS SL +  +    ++G IP+
Sbjct:   336 REQDDWGFISDLTNCSKLQTLNLGENNLGGVLPN-SFSNLSTSLSFLALELNKITGSIPK 394

Query:   181 EISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELD 240
             +I NL  L  +YL  N   GS+P +             +N L GSIP  I  LTEL  L 
Sbjct:   395 DIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILL 454

Query:   241 LGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDI-LYLNFSSNFLTGPLP 298
             LG+NKFS  IP   SNL +L +L L +N L+  IP   +N++ + + +N S N L G +P
Sbjct:   455 LGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIP 514

Query:   299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXX 358
              EI +LK LV      N  SG IP T+G  + L+YL++  N L GSIP ++G L      
Sbjct:   515 QEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETL 574

Query:   359 XXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS-P 417
                     G IP SL  ++ L  LNLSFN   GE+P  G+F   S  S +GN  LCG  P
Sbjct:   575 DLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGIP 634

Query:   418 NLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILRYRKRVKPPPNDANMP--P 475
             +L +P C     +      L +   L  +   +  + LLI  +++  K  P+  +M   P
Sbjct:   635 DLHLPRCCPLLENRKHFPVLPISVSLAAALAILSSLYLLITWHKRTKKGAPSRTSMKGHP 694

Query:   476 VATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSF 535
             +      SY +L +ATD F+  NL+G G FGSVYK ++     VAVKV  L    A KSF
Sbjct:   695 LV-----SYSQLVKATDGFAPTNLLGSGSFGSVYKGKLNIQDHVAVKVLKLENPKALKSF 749

Query:   536 DVEC 539
               EC
Sbjct:   750 TAEC 753

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 200/551 (36%), Positives = 283/551 (51%)

Query:     2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNL 61
             IP   G LR L  L L+ N L G IP  ++N+S+L +FEV            A   LP+L
Sbjct:   190 IPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSL 249

Query:    62 EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
             + + M  N F G IP  I NAS +S+  +G NSFSG +P   G +RNL ++ L      +
Sbjct:   250 QEVYMYYNQFHGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEA 309

Query:   122 S-TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
               T+D  F+++L+NC  L  ++L      G+LP  SV NLS SL    + +  +SG +P 
Sbjct:   310 EETNDWKFMTALTNCSNLQEVELGGCKFGGVLPD-SVSNLSSSLVSLSIRDNKISGSLPR 368

Query:   181 EISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELD 240
             +I NL NL  + L  N L GS+P +             +NKL GS+P  I  LT+L  ++
Sbjct:   369 DIGNLVNLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNME 428

Query:   241 LGSNKFSRSIPACFSNLASLRTLSLGSNE-LTSIPLTFWNLKDIL-YLNFSSNFLTGPLP 298
             +  N F  +IP+   NL  L  ++LG N  +  IP+  +++  +   L+ S N L G +P
Sbjct:   429 VQFNAFGGTIPSTLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIP 488

Query:   299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXX 358
              EI  LK +V      N  SG  P+TIG  + LQ+LF+  N L GSIP ++  L      
Sbjct:   489 KEIGKLKNIVEFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTL 548

Query:   359 XXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS-P 417
                     G IP+SL  +  L  LNLSFN   GE+P  G F N S    +GN  +CG  P
Sbjct:   549 DLSGNNLSGQIPMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNAHICGGIP 608

Query:   418 NLRVPPCKTSTHHTSWKNALLLGTVLPL-STIFMIVVILLILR-YRKRVKPPPNDANMP- 474
              L +P C   +        LLL  V+ L ST+ +  ++ ++L  +++R K  P   +M  
Sbjct:   609 ELHLPTCSLKSRKKKKHQILLLVVVICLVSTLAVFSLLYMLLTCHKRRKKEVPATTSMQG 668

Query:   475 -PVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI--QDG---MEVAVKVFHLHC 528
              P+ T     Y +L +ATD FS ++L+G G FGSVYK     QDG     VAV+V  L  
Sbjct:   669 HPMIT-----YKQLVKATDGFSSSHLLGSGSFGSVYKGEFDSQDGEITSLVAVRVLKLET 723

Query:   529 SGAFKSFDVEC 539
               A KSF  EC
Sbjct:   724 PKALKSFTAEC 734

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 194/552 (35%), Positives = 282/552 (51%)

Query:     1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
             EIP +I  L+ +    ++ NK  GV P  ++N+S+L    +             G  LPN
Sbjct:   216 EIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPN 275

Query:    61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
             L++L M  N+F GTIP  + N S L  L++  N  +G IP +FG L+NL  + L NN L 
Sbjct:   276 LQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLG 335

Query:   121 S-STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
             + S+ DL+FL +L+NC  L Y+++  N L G LP   + NLS  L    +    +SG IP
Sbjct:   336 NYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLP-VFIANLSTQLTELSLGGNLISGSIP 394

Query:   180 EEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYEL 239
               I NL +L  + LG N L G +P +              N L G IP+++  ++ L  L
Sbjct:   395 HGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYL 454

Query:   240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
              L +N F  SIP+   + + L  L+LG+N+L  SIP     L  ++ LN S N L GPL 
Sbjct:   455 YLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLR 514

Query:   299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXX 358
              +I  LK L+ +D S N  SG IP T+ +   L++L +  N   G IP  I  L      
Sbjct:   515 QDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIP-DIRGLTGLRFL 573

Query:   359 XXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS-P 417
                     GTIP  +   S L++LNLS N   G +P  G F N SA S  GN  LCG  P
Sbjct:   574 DLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIP 633

Query:   418 NLRVPPCKTST--HHTSWKNALLLGTVLPLSTIFMIVVILLILR-YRKRVKPP-----PN 469
             +L++ PC       H+S +  + +     ++ + ++ + ++ L  Y+ RVK        N
Sbjct:   634 SLQLQPCSVELPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNEN 693

Query:   470 DANMPPVAT-WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527
             D +  PV + + + SY EL + T  FS +NLIG G FG+V+K  +      VA+KV +L 
Sbjct:   694 DRSFSPVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNLC 753

Query:   528 CSGAFKSFDVEC 539
               GA KSF  EC
Sbjct:   754 KRGAAKSFIAEC 765

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.6e-71, P = 1.6e-71
 Identities = 185/553 (33%), Positives = 274/553 (49%)

Query:     1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
             EIP E+  L  +    ++ N   G  P  ++N+S+L+   +             G  LPN
Sbjct:   208 EIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPN 267

Query:    61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL- 119
             L  L + +N F G IP  + N S L   ++  N  SG IP +FG LRNL  + + NN L 
Sbjct:   268 LRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLG 327

Query:   120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
              +S+S L F+ +++NC  L Y+D+  N L G LP  S+ NLS +L   ++    +SG IP
Sbjct:   328 NNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPA-SIANLSTTLTSLFLGQNLISGTIP 386

Query:   180 EEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYEL 239
              +I NL +L  + L  N L+G +P++              N + G IP+    +T L +L
Sbjct:   387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKL 446

Query:   240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
              L SN F   IP        L  L + +N L  +IP     +  + Y++ S+NFLTG  P
Sbjct:   447 HLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFP 506

Query:   299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXX 358
              E+  L++LVG+  S N  SG +P  IG    +++LF+  N   G+IP  I  L+     
Sbjct:   507 EEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIP-DISRLVSLKNV 565

Query:   359 XXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPN 418
                     G IP  L  L  L +LNLS NK  G +P  G F N +A S  GN  +CG   
Sbjct:   566 DFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVR 625

Query:   419 -LRVPPC--KTSTHHT---SWKNALLLGTVLPLSTIFMIVVILLILRYRKRVKPP-PNDA 471
              +++ PC  + S       S +  ++ G  + ++++ +I+++  +  + KR K    +D 
Sbjct:   626 EMQLKPCIVQASPRKRKPLSVRKKVVSGICIGIASLLLIIIVASLCWFMKRKKKNNASDG 685

Query:   472 NMPPVATWRRF----SYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526
             N     T   F    SY EL  AT RFS  NLIG G FG+V+K  +  +   VAVKV +L
Sbjct:   686 NPSDSTTLGMFHEKVSYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNL 745

Query:   527 HCSGAFKSFDVEC 539
                GA KSF  EC
Sbjct:   746 LKHGATKSFMAEC 758

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 192/551 (34%), Positives = 273/551 (49%)

Query:     1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
             EIP ++  L  +  L L  N   GV P  ++N+S+LK+  +             G+ LPN
Sbjct:   201 EIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPN 260

Query:    61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
             L    M  N F G+IP  + N S L  L + +N+ +G IP TFGN+ NL  + L+ N L 
Sbjct:   261 LLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLG 319

Query:   121 SSTS-DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
             S +S DL FL+SL+NC  L  + +  N L G LP  S+ NLS  L    +    +SG IP
Sbjct:   320 SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLP-ISIANLSAKLVTLDLGGTLISGSIP 378

Query:   180 EEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYEL 239
              +I NL NL  + L  N L+G +P +              N+L G IP  I  +T L  L
Sbjct:   379 YDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETL 438

Query:   240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
             DL +N F   +P    N + L  L +G N+L  +IPL    ++ +L L+ S N L G LP
Sbjct:   439 DLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLP 498

Query:   299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXX 358
              +I  L+ L  +    N  SG +P T+G+   ++ LF+  N   G IP  +  L+     
Sbjct:   499 QDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP-DLKGLVGVKEV 557

Query:   359 XXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS-P 417
                     G+IP      S LE LNLSFN L G++P  G F N +  S  GN  LCG   
Sbjct:   558 DLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIM 617

Query:   418 NLRVPPCKTST-----HHTSWKNALLLGT---VLPLSTIFMIVVILLILRYRKRVKPPPN 469
               ++ PC +        H+S    +++G    +  L  +FM  V L+ LR RK+ K   N
Sbjct:   618 GFQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNN 677

Query:   470 DANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC 528
                        + SY +L  AT+ FS +N++G G FG+VYKA +  +   VAVKV ++  
Sbjct:   678 PTPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQR 737

Query:   529 SGAFKSFDVEC 539
              GA KSF  EC
Sbjct:   738 RGAMKSFMAEC 748

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 2.7e-67, P = 2.7e-67
 Identities = 180/549 (32%), Positives = 266/549 (48%)

Query:     1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
             EIP +I  L  +  L L+ N   GV P   +N+S+L+   +             G  LPN
Sbjct:   201 EIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPN 260

Query:    61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
             +  L +  N   G IP  + N S L +  +G N  +G I   FG L NL+ + L NN L 
Sbjct:   261 IHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLG 320

Query:   121 S-STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
             S S  DL FL +L+NC  L  + +S N L G LP TS+ N+S  L    +    + G IP
Sbjct:   321 SYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALP-TSIVNMSTELTVLNLKGNLIYGSIP 379

Query:   180 EEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYEL 239
              +I NL  L  + L  N L G +P +              N+  G IP+ I  LT+L +L
Sbjct:   380 HDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKL 439

Query:   240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
              L +N F   +P    + + +  L +G N+L  +IP     +  +++LN  SN L+G LP
Sbjct:   440 YLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTLVHLNMESNSLSGSLP 499

Query:   299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXX 358
              +I  L+ LV +    NN SG +P T+G    ++ +++  N   G+IP  I  L+     
Sbjct:   500 NDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIP-DIKGLMGVKNV 558

Query:   359 XXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS-P 417
                     G+I    E  S LE LNLS N   G +P  G F N +  S  GN+ LCGS  
Sbjct:   559 DLSNNNLSGSISEYFENFSKLEYLNLSDNNFEGRVPTEGIFQNATLVSVFGNKNLCGSIK 618

Query:   418 NLRVPPC-----KTSTHHTSWKNALLLGTVLPLSTIFMIVVILLI-LRYRKRVKPPPNDA 471
              L++ PC        T H S    + +G  + ++ + ++ ++ L   + RK  +   N A
Sbjct:   619 ELKLKPCIAQAPPVETRHPSLLKKVAIGVSVGIALLLLLFIVSLSWFKKRKNNQKINNSA 678

Query:   472 NMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG 530
                      + SY +L  ATD FS +N++G G FG+V+KA +Q +   VAVKV ++   G
Sbjct:   679 PFTLEIFHEKLSYGDLRNATDGFSSSNIVGSGSFGTVFKALLQTENKIVAVKVLNMQRRG 738

Query:   531 AFKSFDVEC 539
             A KSF  EC
Sbjct:   739 AMKSFMAEC 747

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 1.8e-63, P = 1.8e-63
 Identities = 173/551 (31%), Positives = 268/551 (48%)

Query:     1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
             E+P E+  L  +  L LS NK  GV P  ++N+S L+   +             G  LPN
Sbjct:   201 EVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPN 260

Query:    61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
             +  L +  N+  G IP  + N S L    +  N  +G I   FG + +L  + L  N L 
Sbjct:   261 IRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLG 320

Query:   121 SST-SDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
             S T  DL F+ SL+NC  L  + +    L G LP TS+ N+S  L    +   +  G IP
Sbjct:   321 SYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALP-TSIANMSTELISLNLIGNHFFGSIP 379

Query:   180 EEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYEL 239
             ++I NL  L  + LG N L G +P +              N++ G IP+ I  LT+L  L
Sbjct:   380 QDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEIL 439

Query:   240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
              L +N F   +P      + +  L +G N+L  +IP     +  ++ L+   N L+G LP
Sbjct:   440 YLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLP 499

Query:   299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXX 358
              +I +L+ LV +    N FSG +P T+G+   ++ LF+  N   G+IP +I  L+     
Sbjct:   500 NDIGSLQNLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIP-NIRGLMGVRRV 558

Query:   359 XXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS-P 417
                     G+IP      S LE LNLS N   G++P  G+F N +     GN+ LCG   
Sbjct:   559 DLSNNDLSGSIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGIK 618

Query:   418 NLRVPPC-----KTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILR-YRKRVKPPPNDA 471
             +L++ PC        T H+S    + +   + ++ + ++V+  ++L  +RKR K    + 
Sbjct:   619 DLKLKPCLAQEPPVETKHSSHLKKVAILVSIGIALLLLLVIASMVLCWFRKRRKNQQTNN 678

Query:   472 NMPPVAT--WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC 528
              +P        + SY +L  AT+ FS +N++G G FG+V+KA +  +   VAVKV ++  
Sbjct:   679 LVPSKLEIFHEKISYGDLRNATNGFSSSNMVGSGSFGTVFKALLPTESKIVAVKVLNMQR 738

Query:   529 SGAFKSFDVEC 539
              GA KSF  EC
Sbjct:   739 RGAMKSFMAEC 749

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 4.1e-55, Sum P(2) = 4.1e-55
 Identities = 141/406 (34%), Positives = 201/406 (49%)

Query:     1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
             ++P EI  LR LE+L L  N+  G IP ++ N ++LK+ ++             G RL  
Sbjct:   423 KLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIG-RLKE 481

Query:    61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
             L +L +R N   G +P  + N  +L++L+L DN  SG IP +FG L+ L ++ LYNN L 
Sbjct:   482 LNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQ 541

Query:   121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
              +  D     SL + + LT I+LS N L+G +     G+ S+ L  F + N      IP 
Sbjct:   542 GNLPD-----SLISLRNLTRINLSHNRLNGTIHPLC-GSSSY-LS-FDVTNNGFEDEIPL 593

Query:   181 EISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELD 240
             E+ N  NL  + LG N+L G IP T            + N L G+IP  +    +L  +D
Sbjct:   594 ELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHID 653

Query:   241 LGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLPL 299
             L +N  S  IP     L+ L  L L SN+   S+P   +N   +L L+   N L G +P 
Sbjct:   654 LNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQ 713

Query:   300 EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXXX 359
             EI NL  L  ++   N FSG +P  +G L  L  L +  N L G IP  IG L       
Sbjct:   714 EIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSAL 773

Query:   360 XXXXXX-XGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSA 404
                     G IP ++  LS LE L+LS N+L GE+P  GS G+  +
Sbjct:   774 DLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP--GSVGDMKS 817

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 163/542 (30%), Positives = 261/542 (48%)

Query:     1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
             E+P ++G L NL  L    N L G IP+ + N + LK+ ++             G R+ N
Sbjct:   375 ELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFG-RM-N 432

Query:    61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
             L  + +  N+F G IP  IFN S L  L + DN+ +G +    G L+ L  + +  N LT
Sbjct:   433 LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLT 492

Query:   121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
                        + N K L  + L  N   G +P   + NL+  L+   M + ++ G IPE
Sbjct:   493 GPIP-----REIGNLKDLNILYLHSNGFTGRIP-REMSNLT-LLQGLRMYSNDLEGPIPE 545

Query:   181 EISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELD 240
             E+ ++  L ++ L  NK +G IP                NK  GSIP ++  L+ L   D
Sbjct:   546 EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFD 605

Query:   241 LGSNKFSRSIPACFSNLASLRTLSL----GSNELT-SIPLTFWNLKDILYLNFSSNFLTG 295
             +  N  + +IP     LASL+ + L     +N LT +IP     L+ +  ++ S+N  +G
Sbjct:   606 ISDNLLTGTIPG--ELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSG 663

Query:   296 PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLF---VGYNRLQGSIPYSIGDL 352
              +P  ++  K +  +DFS NN SG IP  +   +G+  +    +  N   G IP S G++
Sbjct:   664 SIPRSLQACKNVFTLDFSQNNLSGHIPDEV--FQGMDMIISLNLSRNSFSGEIPQSFGNM 721

Query:   353 IXXXXXXXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNEL 412
                           G IP SL  LS L+ L L+ N L G +P  G F N +A    GN  
Sbjct:   722 THLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTD 781

Query:   413 LCGSPNLRVPPC--KTSTHHTSWKNA---LLLGTVLPLSTIFMIVVILLILRYRKRVKPP 467
             LCGS    + PC  K  + H S +     ++LG+   L  + ++V+IL   + +++    
Sbjct:   782 LCGSKK-PLKPCTIKQKSSHFSKRTRVILIILGSAAALLLVLLLVLILTCCKKKEKKIEN 840

Query:   468 PNDANMPPVAT---WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVF 524
              +++++P + +    +RF   EL +ATD F+  N+IG     +VYK +++DG  +AVKV 
Sbjct:   841 SSESSLPDLDSALKLKRFEPKELEQATDSFNSANIIGSSSLSTVYKGQLEDGTVIAVKVL 900

Query:   525 HL 526
             +L
Sbjct:   901 NL 902

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2092810 BRL3 "BRI1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 2.5e-42, Sum P(2) = 2.5e-42
 Identities = 134/430 (31%), Positives = 198/430 (46%)

Query:    11 NLELLVLSHNKLV-GVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEV--LRMR 67
             +LE+L LS N L    I   VF+ + L +  V            +     N  +  + + 
Sbjct:   125 SLEVLDLSSNSLTDSSIVDYVFS-TCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLS 183

Query:    68 SNNFCGTIPH-FIFN-ASKLSLLELGDNSFSG-FIPDTFGNLRNLNKVTLYNNYLTSSTS 124
             +N F   IP  FI +  + L  L+L  N+ +G F   +FG   NL   +L  N   S + 
Sbjct:   184 NNRFSDEIPETFIADFPNSLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQN---SISG 240

Query:   125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSV-GNLSHSLEYFYMPNCNVSGGIPEEIS 183
             D  F  SLSNCK L  ++LS N L G +PG    GN  + L    + +   SG IP E+S
Sbjct:   241 D-RFPVSLSNCKLLETLNLSRNSLIGKIPGDDYWGNFQN-LRQLSLAHNLYSGEIPPELS 298

Query:   184 NLTNLI-IIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNIC-RLTELYELDL 241
              L   + ++ L GN L G +P +             +NKL G   + +  +L+ +  L L
Sbjct:   299 LLCRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYL 358

Query:   242 GSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLN---FSSNFLTGPL 297
               N  S S+P   +N ++LR L L SNE T  +P  F +L+    L     ++N+L+G +
Sbjct:   359 PFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTV 418

Query:   298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG-DLIXXX 356
             P+E+   K L  ID S N  +G+IP  I +L  L  L +  N L G IP SI  D     
Sbjct:   419 PVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLE 478

Query:   357 XXXXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCG 415
                       G++P S+ K + +  ++LS N L GEIP G G     +     GN  L G
Sbjct:   479 TLILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQL-GNNSLTG 537

Query:   416 SPNLRVPPCK 425
             +    +  CK
Sbjct:   538 NIPSELGNCK 547

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025217001 SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (2202 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	540
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-55
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-47
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	0.001
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	0.001
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	0.001
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	0.002
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  198 bits (505), Expect = 9e-55
 Identities = 143/434 (32%), Positives = 212/434 (48%), Gaps = 57/434 (13%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            IP  +GNL+NL+ L L  NKL G IP  +F++  L   ++S+NSLSG +  +  ++L N
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQN 309

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           LE+L + SNNF G IP  + +  +L +L+L  N FSG IP      +NL K   +NN   
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP------KNLGK---HNN--- 357

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
                            LT +DLS N                          N++G IPE
Sbjct: 358 -----------------LTVLDLSTN--------------------------NLTGEIPE 374

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
            + +  NL  + L  N L G IP +L   + L+ + L DN   G +P+   +L  +Y LD
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434

Query: 241 LGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLE 300
           + +N     I +   ++ SL+ LSL  N+        +  K +  L+ S N  +G +P +
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK 494

Query: 301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNL 360
           + +L  L+ +  S N  SG IP  + S K L  L + +N+L G IP S  ++  L  L+L
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 361 SNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLR 420
           S N LSG IP +L  +  L  +N+S N L G +P  G+F   +A +  GN  LCG     
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTS 614

Query: 421 -VPPCKTSTHHTSW 433
            +PPCK      SW
Sbjct: 615 GLPPCKRVRKTPSW 628

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  180 bits (457), Expect = 2e-48
 Identities = 135/396 (34%), Positives = 208/396 (52%), Gaps = 12/396 (3%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVS-TLKVFEVSNNSLSGSLSSIAGVRLP 59
           +I   I  L  ++ + LS+N+L G IP  +F  S +L+   +SNN+ +GS   I    +P
Sbjct: 84  KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS---IPRGSIP 140

Query: 60  NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL 119
           NLE L + +N   G IP+ I + S L +L+LG N   G IP++  NL +L  +TL +N L
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
                       L   K+L +I L  N L G +P   +G L+ SL +  +   N++G IP
Sbjct: 201 VGQIP-----RELGQMKSLKWIYLGYNNLSGEIP-YEIGGLT-SLNHLDLVYNNLTGPIP 253

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             + NL NL  ++L  NKL+G IP ++  LQKL  L L+DN L G IP  + +L  L  L
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLP 298
            L SN F+  IP   ++L  L+ L L SN+ +  IP       ++  L+ S+N LTG +P
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
             + +   L  +    N+  G IP ++G+ + L+ + +  N   G +P     L  +  L
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
           ++SNNNL G I      +  L+ L+L+ NK  G +P
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  177 bits (451), Expect = 1e-47
 Identities = 120/330 (36%), Positives = 174/330 (52%), Gaps = 9/330 (2%)

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
           S + C        N+S++  ++L   + SG I      L  +  + L NN L+    D  
Sbjct: 54  SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI 113

Query: 128 FLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTN 187
           F +S S    L Y++LS+N   G +P  S+ NL    E   + N  +SG IP +I + ++
Sbjct: 114 FTTSSS----LRYLNLSNNNFTGSIPRGSIPNL----ETLDLSNNMLSGEIPNDIGSFSS 165

Query: 188 LIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS 247
           L ++ LGGN L G IP +L+ L  L+ L+LA N+L G IP  + ++  L  + LG N  S
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 248 RSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKV 306
             IP     L SL  L L  N LT  IP +  NLK++ YL    N L+GP+P  I +L+ 
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285

Query: 307 LVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS 366
           L+ +D S N+ SG IP  +  L+ L+ L +  N   G IP ++  L  L+ L L +N  S
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Query: 367 GTIPVSLEKLSYLEDLNLSFNKLAGEIPRG 396
           G IP +L K + L  L+LS N L GEIP G
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  177 bits (451), Expect = 1e-47
 Identities = 131/388 (33%), Positives = 193/388 (49%), Gaps = 20/388 (5%)

Query: 32  NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN-ASKLSLLEL 90
           N S +   ++S  ++SG +SS A  RLP ++ + + +N   G IP  IF  +S L  L L
Sbjct: 67  NSSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 91  GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSST-SDLNFLSSLSNCKTLTYIDLSDNPLD 149
            +N+F+G IP   G++ NL  + L NN L+    +D+   SSL        +DL  N L 
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK------VLDLGGNVLV 177

Query: 150 GILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKL 209
           G +P  S+ NL+ SLE+  + +  + G IP E+  + +L  IYLG N L+G IP  +  L
Sbjct: 178 GKIPN-SLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 210 QKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNE 269
             L  L L  N L G IP+++  L  L  L L  NK S  IP    +L  L +L L  N 
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 270 LT-SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSL 328
           L+  IP     L+++  L+  SN  TG +P+ + +L  L  +    N FSG IP  +G  
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 329 KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
             L  L +  N L G IP  +    +L  L L +N+L G IP SL     L  + L  N 
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415

Query: 389 LAGEIPRGGS------FGNFSAESFEGN 410
            +GE+P   +      F + S  + +G 
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGR 443

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 86.0 bits (213), Expect = 1e-17
 Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 29/178 (16%)

Query: 286 LNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI 345
           L   +  L G +P +I  L+ L  I+ S N+  G IP ++GS+  L+ L + YN   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 346 PYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAE 405
           P S+G L SL+ LNL+ N+LSG +P +                L G +    SF      
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA----------------LGGRLLHRASF------ 520

Query: 406 SFEGNELLCGSPNLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILRYRKR 463
           +F  N  LCG P LR   C     H S      +G    +S  F+ +VI  +  +++R
Sbjct: 521 NFTDNAGLCGIPGLR--ACGP---HLS--VGAKIGIAFGVSVAFLFLVICAMCWWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query: 198 LNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNL 257
           L G IP  +SKL+ LQ ++L+ N + G+IP ++  +T L  LDL  N F+ SIP     L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 258 ASLRTLSLGSNELT 271
            SLR L+L  N L+
Sbjct: 490 TSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.8 bits (147), Expect = 6e-10
 Identities = 83/348 (23%), Positives = 146/348 (41%), Gaps = 20/348 (5%)

Query: 32  NVSTLKVFEVSNNSLSGSLSSI-AGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL 90
           ++S L   ++ + S   SL      + L  L  L +  N     I   +   + L+ L+L
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDL 123

Query: 91  GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDG 150
            +N+ +   P       NL ++ L +N + S  S L       N   L  +DLS N L  
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR------NLPNLKNLDLSFNDLSD 177

Query: 151 ILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQ 210
           +     + +   +L    +    +S  +P EI  L+ L  + L  N +   +  +LS L+
Sbjct: 178 LPK---LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK 232

Query: 211 KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNEL 270
            L GL L++NKLE  +P +I  L+ L  LDL +N+   S  +   +L +LR L L  N L
Sbjct: 233 NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSL 289

Query: 271 TSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKG 330
           ++       L  +L L  +         LE++   +L+  +   N      P  +  L+ 
Sbjct: 290 SNALPLIALLLLLLELLLNLLLTL--KALELKLNSILLNNNILSNGE-TSSPEALSILES 346

Query: 331 LQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSY 378
           L  L+   N L  S       + +  ++    + +   +   LEK++Y
Sbjct: 347 LNNLWTLDNALDESNLNRY-IVKNPNAIGSLLDLVKKHVNQLLEKVNY 393

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 33/82 (40%), Positives = 47/82 (57%)

Query: 171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI 230
           N  + G IP +IS L +L  I L GN + G+IP +L  +  L+ L L+ N   GSIP ++
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 231 CRLTELYELDLGSNKFSRSIPA 252
            +LT L  L+L  N  S  +PA
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 273 IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQ 332
           IP     L+ +  +N S N + G +P  + ++  L  +D S N+F+G IP ++G L  L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 333 YLFVGYNRLQGSIPYSIGD-LISLKSLNLSNN 363
            L +  N L G +P ++G  L+   S N ++N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 214 GLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-S 272
           GL L +  L G IPN+I +L  L  ++L  N    +IP    ++ SL  L L  N    S
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 273 IPLTFWNLKDILYLNFSSNFLTGPLP 298
           IP +   L  +  LN + N L+G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 69/213 (32%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 201 SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
                L  L  L  L L  N+L  +I + +  LT L  LDL +N  +   P      ++L
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV 320
           + L L  N++ S+P    NL ++  L+ S N L+  LP  + NL  L  +D S N  S  
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 321 IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLE 380
           +P  I  L  L+ L +  N +   +  S+ +L +L  L LSNN L   +P S+  LS LE
Sbjct: 201 LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258

Query: 381 DLNLSFNKLAGEIPRGGSFGNFSAESFEGNELL 413
            L+LS N+++  I   GS  N       GN L 
Sbjct: 259 TLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 34/203 (16%)

Query: 85  LSLLELG-DNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDL 143
           LSL E G        +         L ++ L +N L         L SL    +L  + L
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC--GVLESLLRSSSLQELKL 115

Query: 144 SDNPL-DGILP--GTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG 200
           ++N L D  L      + +L  +LE   +    + G   E ++                 
Sbjct: 116 NNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA--------------- 160

Query: 201 SIPITLSKLQKLQGLSLADNKLEGSIPNNICR----LTELYELDLGSNKF----SRSIPA 252
                L   + L+ L+LA+N +  +    +         L  LDL +N      + ++  
Sbjct: 161 -----LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215

Query: 253 CFSNLASLRTLSLGSNELTSIPL 275
             ++L SL  L+LG N LT    
Sbjct: 216 TLASLKSLEVLNLGDNNLTDAGA 238

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG 200
           + L +  L G +P   +  L H L+   +   ++ G IP  + ++T+L ++ L  N  NG
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 201 SIPITLSKLQKLQGLSLADNKLEGSIP 227
           SIP +L +L  L+ L+L  N L G +P
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 26/75 (34%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           IP++I  LR+L+ + LS N + G IP  + ++++L+V ++S NS +GS+    G +L +L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSL 492

Query: 62  EVLRMRSNNFCGTIP 76
            +L +  N+  G +P
Sbjct: 493 RILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            +P  + NL NL+ L LS N L   +P  + N+S L   ++S N +S  L       L  
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSA 210

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           LE L + SNN    +   + N   LS LEL +N     +P++ GNL NL  + L NN ++
Sbjct: 211 LEELDL-SNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLE 165
           S       +SSL +   L  +DLS N L   LP  ++  L   L 
Sbjct: 269 S-------ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELL 306

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 330 GLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
            L+ L +  NRL      +   L +LK L+LS NNL+   P +   L  L  L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 313 SVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS 372
            V  + G+       +  +     G N + G I  +I  L  ++++NLSNN LSG IP  
Sbjct: 56  DVCLWQGITCNNSSRVVSID--LSGKN-ISGKISSAIFRLPYIQTINLSNNQLSGPIPDD 112

Query: 373 LEKLSY-LEDLNLSFNKLAGEIPRGGSFG 400
           +   S  L  LNLS N   G IPRG    
Sbjct: 113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 15  LVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGT 74
           L L +  L G IP  +  +  L+   +S NS+ G++    G  + +LEVL +  N+F G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGS 481

Query: 75  IPHFIFNASKLSLLELGDNSFSGFIPDTFG 104
           IP  +   + L +L L  NS SG +P   G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 88  LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP 147
           L L +    GFIP+    LR+L  + L  N +  +        SL +  +L  +DLS N 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-----PSLGSITSLEVLDLSYNS 477

Query: 148 LDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITL 206
                                      +G IPE +  LT+L I+ L GN L+G +P  L
Sbjct: 478 F--------------------------NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 12/82 (14%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            IP  +G++ +LE+L LS+N   G IP  +  +++L++  ++ NSLSG + +  G RL  
Sbjct: 457 NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL-- 514

Query: 61  LEVLRMRSNNF------CGTIP 76
              L   S NF      CG IP
Sbjct: 515 ---LHRASFNFTDNAGLCG-IP 532

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 236 LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
           L  LDL +N+ +      F  L +L+ L L  N LTSI    F  L  +  L+ S N
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 21/64 (32%), Positives = 38/64 (59%)

Query: 57  RLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN 116
           +L +L+ + +  N+  G IP  + + + L +L+L  NSF+G IP++ G L +L  + L  
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Query: 117 NYLT 120
           N L+
Sbjct: 500 NSLS 503

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 303 NLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSN 362
           NLK L   D S N  + +       L  L+ L +  N L    P +   L SL+SL+LS 
Sbjct: 1   NLKSL---DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Query: 363 NNL 365
           NNL
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 73  GTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSL 132
           G IP+ I     L  + L  NS  G IP + G++ +L  + L  N    S  +     SL
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-----SL 486

Query: 133 SNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSG--GIPE 180
               +L  ++L+ N L G +P    G L H   + +  N  + G  G+  
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRA 536

Length = 623

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 498 NLIGRGGFGSVYKAR-IQDGMEVAVKVFHL 526
             +G G FG VY AR  + G  VA+KV   
Sbjct: 5   EKLGEGSFGKVYLARDKKTGKLVAIKVIKK 34

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 499 LIGRGGFGSVYKARIQDGMEVAVK 522
            IG+G FG VYK  ++   EVAVK
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVK 25

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 500 IGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           +G G FG+VYKA+    G  VAVK+    
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKR 35

Length = 260

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHL 526
           + F+    IG+G FG VYKA  +     VA+KV  L
Sbjct: 1   ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDL 36

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 18/28 (64%), Positives = 21/28 (75%), Gaps = 1/28 (3%)

Query: 500 IGRGGFGSVYKAR-IQDGMEVAVKVFHL 526
           IG+GGFG VYKAR  + G EVA+KV  L
Sbjct: 8   IGKGGFGEVYKARHKRTGKEVAIKVIKL 35

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 60  NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL 119
           NL+ L + +N               L +L+L  N+ +   P+ F  L +L  + L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	540
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.98
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PLN03150	623	hypothetical protein; Provisional	99.55
PLN03150	623	hypothetical protein; Provisional	99.32
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.24
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
KOG3653	534	consensus Transforming growth factor beta/activin	98.45
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.33
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	98.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.96
KOG2052	513	consensus Activin A type IB receptor, serine/threo	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.8
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.79
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	97.77
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.75
KOG4341	483	consensus F-box protein containing LRR [General fu	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.65
PLN03224	507	probable serine/threonine protein kinase; Provisio	97.59
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	97.54
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	97.5
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.39
KOG4341	483	consensus F-box protein containing LRR [General fu	97.28
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	97.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.15
PRK09188	365	serine/threonine protein kinase; Provisional	96.99
KOG0192	362	consensus Tyrosine kinase specific for activated (	96.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.88
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	96.73
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	96.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.49
PHA02988	283	hypothetical protein; Provisional	96.45
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	96.39
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	96.35
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	96.24
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	96.23
PTZ00284	467	protein kinase; Provisional	96.22
KOG0201	467	consensus Serine/threonine protein kinase [Signal	96.17
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	96.08
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	96.07
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	96.04
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	96.01
PLN00034	353	mitogen-activated protein kinase kinase; Provision	95.97
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	95.94
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	95.93
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.9
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.9
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	95.88
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	95.86
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	95.83
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	95.78
PTZ00283	496	serine/threonine protein kinase; Provisional	95.77
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	95.71
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	95.68
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	95.68
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	95.64
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	95.57
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	95.57
PTZ00263	329	protein kinase A catalytic subunit; Provisional	95.37
PTZ00036	440	glycogen synthase kinase; Provisional	95.36
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	95.32
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	95.3
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	95.23
smart00090	237	RIO RIO-like kinase.	95.2
KOG0577	948	consensus Serine/threonine protein kinase [Signal	95.15
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	95.12
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	95.08
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	95.06
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	95.04
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	95.01
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	94.99
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	94.99
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	94.98
KOG0575	592	consensus Polo-like serine/threonine protein kinas	94.94
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	94.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.89
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	94.86
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	94.84
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	94.81
KOG0581	364	consensus Mitogen-activated protein kinase kinase	94.8
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	94.8
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	94.79
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	94.74
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	94.73
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	94.69
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	94.69
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	94.69
KOG0605	550	consensus NDR and related serine/threonine kinases	94.67
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	94.64
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	94.63
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	94.58
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	94.58
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	94.56
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	94.43
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	94.38
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	94.16
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	94.08
KOG0694	694	consensus Serine/threonine protein kinase [Signal	94.06
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	94.03
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	94.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	93.93
KOG0198	313	consensus MEKK and related serine/threonine protei	93.83
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	93.81
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.7
KOG1989	738	consensus ARK protein kinase family [Signal transd	93.59
KOG4308	478	consensus LRR-containing protein [Function unknown	93.55
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	93.54
KOG4308	478	consensus LRR-containing protein [Function unknown	93.46
KOG1027	903	consensus Serine/threonine protein kinase and endo	93.43
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	93.42
PHA02882	294	putative serine/threonine kinase; Provisional	93.36
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	93.34
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	93.22
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	93.15
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	93.11
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	93.1
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	92.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.56
smart00370	26	LRR Leucine-rich repeats, outliers.	92.56
PRK09605	535	bifunctional UGMP family protein/serine/threonine	92.47
PHA03209	357	serine/threonine kinase US3; Provisional	92.21
COG0661	517	AarF Predicted unusual protein kinase [General fun	92.19
PHA03212	391	serine/threonine kinase US3; Provisional	92.1
KOG0598	357	consensus Ribosomal protein S6 kinase and related	91.95
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	91.8
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	91.31
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	91.27
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.04
PHA03211	461	serine/threonine kinase US3; Provisional	91.04
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.97
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	90.22
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	90.14
smart00370	26	LRR Leucine-rich repeats, outliers.	90.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.07
PTZ00266	1021	NIMA-related protein kinase; Provisional	89.76
KOG4721	904	consensus Serine/threonine protein kinase, contain	89.73
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	89.24
PTZ00267	478	NIMA-related protein kinase; Provisional	89.04
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	88.72
PHA03207	392	serine/threonine kinase US3; Provisional	88.59
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	88.55
KOG0607	463	consensus MAP kinase-interacting kinase and relate	88.43
KOG1167	418	consensus Serine/threonine protein kinase of the C	88.39
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	87.94
KOG0583	370	consensus Serine/threonine protein kinase [Signal	86.95
KOG0578	550	consensus p21-activated serine/threonine protein k	86.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.5
KOG0582	516	consensus Ste20-like serine/threonine protein kina	86.39
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	86.31
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	85.98
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	85.31
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	83.95
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	83.42
KOG0611	668	consensus Predicted serine/threonine protein kinas	83.17
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	83.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.95
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	82.23
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	81.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.85
KOG1235	538	consensus Predicted unusual protein kinase [Genera	81.73
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	81.6
KOG4258	1025	consensus Insulin/growth factor receptor (contains	80.11

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-60  Score=530.04  Aligned_cols=512  Identities=29%  Similarity=0.450  Sum_probs=361.7

Q ss_pred             CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304            2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN   81 (540)
Q Consensus         2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~   81 (540)
                      +|..++++++|++|+|++|.+.+.+|..++.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+++.+|..+++
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhC
Confidence            57778888888888888888888888888888888888888888887777776 67888888888888888788888888


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304           82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS  161 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  161 (540)
                      +++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.     +|..+.++++|+.|++++|.+.+.+| ..+..+ 
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l-  331 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-----IPELVIQLQNLEILHLFSNNFTGKIP-VALTSL-  331 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-----CChhHcCCCCCcEEECCCCccCCcCC-hhHhcC-
Confidence            88888888888888777777777788888888887777654     44455556666666666666655555 444444 


Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccc------------------------cCccccCCCCCCeeee
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGS------------------------IPITLSKLQKLQGLSL  217 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~------------------------~~~~l~~l~~L~~L~l  217 (540)
                      ++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.                        +|..+..+++|+.|++
T Consensus       332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L  411 (968)
T PLN00113        332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL  411 (968)
T ss_pred             CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence            4555555555555555555555555555555555555444                        4444455555555555


Q ss_pred             eCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCC
Q 045304          218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGP  296 (540)
Q Consensus       218 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~  296 (540)
                      ++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+ +|.. ...++|+.|++++|++.+.
T Consensus       412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~  490 (968)
T PLN00113        412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGA  490 (968)
T ss_pred             cCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCc
Confidence            5555555555555566666666666666666555555566666666666666655 4433 3446788888888888888


Q ss_pred             CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCC
Q 045304          297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL  376 (540)
Q Consensus       297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  376 (540)
                      +|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+
T Consensus       491 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  570 (968)
T PLN00113        491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV  570 (968)
T ss_pred             cChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC-CCCCCCCCCCCCcCccccceecccchhhHHHHHHHHHh
Q 045304          377 SYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP-NLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVIL  455 (540)
Q Consensus       377 ~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~-~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~  455 (540)
                      ++|+.+++++|++.|.+|..+.+..+....+.||+.+|+.+ ....++|.....  ......++++++++++++++++++
T Consensus       571 ~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  648 (968)
T PLN00113        571 ESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRK--TPSWWFYITCTLGAFLVLALVAFG  648 (968)
T ss_pred             cccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccc--cceeeeehhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999864 223456643211  111222222222222222222222


Q ss_pred             hheeeeccCCCCCCC---CCCCCCc-----ccccccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          456 LILRYRKRVKPPPND---ANMPPVA-----TWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       456 ~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ++++++|++......   ...+...     ..+.++++++.   ..|.++++||+|+||.||||+. .+|..||||++..
T Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~  725 (968)
T PLN00113        649 FVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEIND  725 (968)
T ss_pred             HHHHHhhhcccccccccccccccccccccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccC
Confidence            222222221111100   0001100     11234445444   4578889999999999999997 5789999999964


Q ss_pred             c
Q 045304          527 H  527 (540)
Q Consensus       527 ~  527 (540)
                      .
T Consensus       726 ~  726 (968)
T PLN00113        726 V  726 (968)
T ss_pred             C
Confidence            3

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9e-50  Score=443.05  Aligned_cols=407  Identities=35%  Similarity=0.556  Sum_probs=343.1

Q ss_pred             CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304            2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN   81 (540)
Q Consensus         2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~   81 (540)
                      +|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..+ .++++|+.|++++|.+++.+|..+++
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhc
Confidence            68889999999999999999999999999999999999999999998899887 79999999999999999999999999


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304           82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS  161 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  161 (540)
                      +++|++|++++|.+++.+|..++++++|++|++++|.+.+.     +|..+.++++|+.|++++|.+.+.+| ..+..+ 
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l-  307 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-----IPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQL-  307 (968)
T ss_pred             CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-----CchhHhhccCcCEEECcCCeeccCCC-hhHcCC-
Confidence            99999999999999999999999999999999999999876     67788999999999999999999888 677777 


Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL  241 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  241 (540)
                      ++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus       308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  387 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL  387 (968)
T ss_pred             CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence            79999999999999999999999999999999999999999999999999999999999888777776666666666666


Q ss_pred             CCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCcccc------------------------CCCCCcEEECCCCcccCC
Q 045304          242 GSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFW------------------------NLKDILYLNFSSNFLTGP  296 (540)
Q Consensus       242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~------------------------~l~~L~~L~L~~n~l~~~  296 (540)
                      ++|.+.+.+|..+..+++|+.|++++|.+++ +|..+.                        .+++|+.|++++|++.+.
T Consensus       388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~  467 (968)
T PLN00113        388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG  467 (968)
T ss_pred             cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence            6666655555555555555555555555543 444444                        445555555555555555


Q ss_pred             CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCC
Q 045304          297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL  376 (540)
Q Consensus       297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  376 (540)
                      +|..+ ...+|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus       468 ~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  546 (968)
T PLN00113        468 LPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM  546 (968)
T ss_pred             cCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence            55433 23567777777777877888888888999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCCC
Q 045304          377 SYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGSP  417 (540)
Q Consensus       377 ~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~  417 (540)
                      ++|+.|++++|++++.+|.. ..+..+...++.+|+..+..|
T Consensus       547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999988864 345567778888888765443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-39  Score=308.40  Aligned_cols=397  Identities=22%  Similarity=0.262  Sum_probs=311.9

Q ss_pred             CCCEEeccCcccccCCCccccCC--CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304           11 NLELLVLSHNKLVGVIPTKVFNV--STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLL   88 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L   88 (540)
                      +-+.|+.+.+.+....-..+...  +.-++||+++|.+. .+....|.++++|+.+++..|.++ .+|...+...+|+.|
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L  130 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL  130 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence            34556777777654322333322  34566899998887 666666688899999999888888 778766667778999


Q ss_pred             EccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEE
Q 045304           89 ELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFY  168 (540)
Q Consensus        89 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~  168 (540)
                      +|.+|.++.+-.+++..++.|+.|||+.|.++.++.     ..+..-.++++|+|++|.++..-. ..+..+ .+|..|.
T Consensus       131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~-----~sfp~~~ni~~L~La~N~It~l~~-~~F~~l-nsL~tlk  203 (873)
T KOG4194|consen  131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK-----PSFPAKVNIKKLNLASNRITTLET-GHFDSL-NSLLTLK  203 (873)
T ss_pred             eeeccccccccHHHHHhHhhhhhhhhhhchhhcccC-----CCCCCCCCceEEeecccccccccc-cccccc-chheeee
Confidence            999988887777788888889999999888887643     335555688899999988876654 566667 5888889


Q ss_pred             ccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcc
Q 045304          169 MPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR  248 (540)
Q Consensus       169 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  248 (540)
                      |+.|.++...+..|.++++|+.|+|..|++.-.---.|.++++|+.|.+..|.+...-...|..+.++++|+|..|+++.
T Consensus       204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            99998886666778889999999999998874445678888999999999998887777788888899999999998887


Q ss_pred             ccCccCCCCCCCCEeeCCCCCCCCC-CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccccc
Q 045304          249 SIPACFSNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS  327 (540)
Q Consensus       249 ~~~~~~~~l~~L~~L~l~~n~l~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  327 (540)
                      .-...+.++++|+.|++++|.|..| +..+..+++|+.|+|+.|+++...+..|..+..|++|.|+.|.+...-...|..
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence            7777788888999999999988885 445667788999999999998888888888889999999999888777778888


Q ss_pred             CCCCcEEeCcCccCcccCC---cccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCc
Q 045304          328 LKGLQYLFVGYNRLQGSIP---YSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSA  404 (540)
Q Consensus       328 l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~  404 (540)
                      +++|++|||++|.+++.+.   ..|.++++|+.|++.+|++....-.+|..++.|+.||+.+|.+...-|....-..+..
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~  443 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE  443 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence            8899999999998887664   3466788899999999998866666788889999999999988766665433335556


Q ss_pred             ccccCCCCCCCC
Q 045304          405 ESFEGNELLCGS  416 (540)
Q Consensus       405 ~~~~~n~~~c~~  416 (540)
                      +.+....++|+|
T Consensus       444 Lv~nSssflCDC  455 (873)
T KOG4194|consen  444 LVMNSSSFLCDC  455 (873)
T ss_pred             hhhcccceEEec
Confidence            666666777877

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-39  Score=308.52  Aligned_cols=373  Identities=23%  Similarity=0.259  Sum_probs=335.9

Q ss_pred             CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304           11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL   90 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L   90 (540)
                      .-+.|++++|.+....+..|.++++|+.+.+.+|.++ .||... .-..+|+.|+|.+|.++..-.+.+..++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            4467999999999888889999999999999999998 899876 56778999999999999888889999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEcc
Q 045304           91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP  170 (540)
Q Consensus        91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~  170 (540)
                      +.|.++.+.-..|..-.++++|+|++|+++....     ..|.++.+|..|.|++|.++...+ ..+.++ +.|+.|+|.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-----~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L-~~L~~LdLn  229 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-----GHFDSLNSLLTLKLSRNRITTLPQ-RSFKRL-PKLESLDLN  229 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeecccccccccc-----ccccccchheeeecccCcccccCH-HHhhhc-chhhhhhcc
Confidence            9999998777788888999999999999998743     468888999999999999987655 778888 899999999


Q ss_pred             CCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc
Q 045304          171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI  250 (540)
Q Consensus       171 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  250 (540)
                      .|.+.-.---.|..+++|+.|.+..|.+...-...|..+.++++|+|+.|++...-..++.+++.|+.|++++|.|...-
T Consensus       230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih  309 (873)
T KOG4194|consen  230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH  309 (873)
T ss_pred             ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence            99987554557889999999999999999777788999999999999999999887889999999999999999999999


Q ss_pred             CccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcc---ccc
Q 045304          251 PACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPT---TIG  326 (540)
Q Consensus       251 ~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~  326 (540)
                      ++.+.-+++|+.|+|++|+++.+++ .|..+..|+.|+|++|.++..-...|..+++|+.|||+.|.+++.+.+   .|.
T Consensus       310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~  389 (873)
T KOG4194|consen  310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN  389 (873)
T ss_pred             cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence            9999999999999999999999876 677889999999999999977778899999999999999999987754   567


Q ss_pred             cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeC
Q 045304          327 SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEI  393 (540)
Q Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  393 (540)
                      .+++|+.|++.+|++....-.+|.++..|+.|||.+|.+....|.+|..+ .|+.|-+..-.+.+.+
T Consensus       390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence            89999999999999996666899999999999999999999999999998 8999888766555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=1e-36  Score=291.76  Aligned_cols=373  Identities=26%  Similarity=0.360  Sum_probs=325.6

Q ss_pred             cCCCCCCCEEeccCcccc-cCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 045304            6 IGNLRNLELLVLSHNKLV-GVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASK   84 (540)
Q Consensus         6 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~   84 (540)
                      .+-++-++-+|+++|.++ +..|.....++.++.|.|....+. .+|... +.+.+|++|.+++|++. .+-..++.++.
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~-~vhGELs~Lp~   79 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLI-SVHGELSDLPR   79 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhH-hhhhhhccchh
Confidence            456778889999999999 778999999999999999999998 899998 79999999999999988 44556888999


Q ss_pred             CCEEEccCCcccc-cCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccccc
Q 045304           85 LSLLELGDNSFSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS  163 (540)
Q Consensus        85 L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~  163 (540)
                      |+.+.+.+|++.. -+|..+.++..|+.|||++|++..      .|..+..-+++-+|+|+.|++..+ |...+.++ ..
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E------vP~~LE~AKn~iVLNLS~N~IetI-Pn~lfinL-tD  151 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE------VPTNLEYAKNSIVLNLSYNNIETI-PNSLFINL-TD  151 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhhh------cchhhhhhcCcEEEEcccCccccC-CchHHHhh-Hh
Confidence            9999999998853 367788899999999999999987      556677888999999999999764 54666666 67


Q ss_pred             CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCcccc-CcCCccccCCCCCCeEEcC
Q 045304          164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLE-GSIPNNICRLTELYELDLG  242 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~  242 (540)
                      |-.|+|++|.+. .+|+.+..+..|++|.|++|.+....-..+..+++|+.|++++.+-+ ..+|..+..+.+|..+|++
T Consensus       152 LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  152 LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            899999999996 78888999999999999999887544445667888899999886532 4688999999999999999


Q ss_pred             CCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee-cC
Q 045304          243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG-VI  321 (540)
Q Consensus       243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~  321 (540)
                      .|.+. ..|+.+..+++|+.|+|++|.++.+........+|++|+|+.|+++ .+|+.+..++.|+.|.+.+|+++- -+
T Consensus       231 ~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  231 ENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             ccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence            99997 7899999999999999999999998777777789999999999998 789999999999999999998863 47


Q ss_pred             ccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          322 PTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      |+.++.+.+|+.+..++|.+. ..|..+..|..|+.|.|+.|.+- ++|+.+.-++.|+.||+..|+-.-..|
T Consensus       309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            999999999999999999997 88999999999999999999998 889999999999999999997543333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=3.4e-35  Score=281.33  Aligned_cols=372  Identities=24%  Similarity=0.378  Sum_probs=322.1

Q ss_pred             cCCCCCCEEEcccCcCc-cccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 045304           31 FNVSTLKVFEVSNNSLS-GSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNL  109 (540)
Q Consensus        31 ~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  109 (540)
                      +.++-.+-.|+++|.++ +.+|..+ ..+++++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..+..++.|
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~L   80 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRL   80 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence            45667788999999999 5789888 79999999999999988 89999999999999999999987 455678899999


Q ss_pred             CEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCC
Q 045304          110 NKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLI  189 (540)
Q Consensus       110 ~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  189 (540)
                      +.+.+..|++....    +|..+..+..|+.|||+.|++... | ..+..- .++-.|+|++|++.....+-+.++..|-
T Consensus        81 Rsv~~R~N~LKnsG----iP~diF~l~dLt~lDLShNqL~Ev-P-~~LE~A-Kn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSG----IPTDIFRLKDLTILDLSHNQLREV-P-TNLEYA-KNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             HHHhhhccccccCC----CCchhcccccceeeecchhhhhhc-c-hhhhhh-cCcEEEEcccCccccCCchHHHhhHhHh
Confidence            99999999987753    788899999999999999999865 3 445444 7889999999999855555678899999


Q ss_pred             eeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc-cccCccCCCCCCCCEeeCCCC
Q 045304          190 IIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS-RSIPACFSNLASLRTLSLGSN  268 (540)
Q Consensus       190 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n  268 (540)
                      .|+|++|++. .+|..+..+.+|++|+|++|.+.-..-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|
T Consensus       154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            9999999998 67777889999999999999886444455678889999999987544 468889999999999999999


Q ss_pred             CCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcc-cCCc
Q 045304          269 ELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG-SIPY  347 (540)
Q Consensus       269 ~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~  347 (540)
                      ++..+|+++.++++|+.|+|++|+++ .+....+...+|++|++|.|+++ .+|++++.++.|+.|.+.+|+++- -+|.
T Consensus       233 ~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  233 NLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             CCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc
Confidence            99999999999999999999999998 44445666789999999999999 899999999999999999998874 4899


Q ss_pred             ccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCCC
Q 045304          348 SIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGSP  417 (540)
Q Consensus       348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~  417 (540)
                      .++.+..|+.+..++|.+. ..|..++.|..|+.|.++.|.+.. +|.. ..+..+..+++..||.+.-.|
T Consensus       311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence            9999999999999999998 899999999999999999999974 5543 456677888888998776543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.98  E-value=1.7e-36  Score=275.94  Aligned_cols=391  Identities=27%  Similarity=0.418  Sum_probs=238.8

Q ss_pred             CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304            2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN   81 (540)
Q Consensus         2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~   81 (540)
                      +|++++.+..++.++.++|++. .+|++++.+..|+.|+.++|.+. .+|+.+ +.+-.|+.++..+|+++ ..|..+++
T Consensus        83 lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~-slp~~~~~  158 (565)
T KOG0472|consen   83 LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQIS-SLPEDMVN  158 (565)
T ss_pred             CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccc-cCchHHHH
Confidence            5666777777777777777776 56666777777777777777766 666666 46666777777666666 55666666


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304           82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS  161 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  161 (540)
                      +.+|..+++.+|.+....|..+ +++.|++||...|-++.      +|..++.+.+|..|++..|.+...   ..++.+ 
T Consensus       159 ~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~t------lP~~lg~l~~L~~LyL~~Nki~~l---Pef~gc-  227 (565)
T KOG0472|consen  159 LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLET------LPPELGGLESLELLYLRRNKIRFL---PEFPGC-  227 (565)
T ss_pred             HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhhc------CChhhcchhhhHHHHhhhcccccC---CCCCcc-
Confidence            6666666666666664333333 36666666666666555      445566666666666666665543   234444 


Q ss_pred             ccCcEEEccCCcceecCChh-ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEE
Q 045304          162 HSLEYFYMPNCNVSGGIPEE-ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD  240 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  240 (540)
                      ..|++|.+..|++. .+|.+ ..+++++..||+.+|++. ..|..+.-+++|.+||+++|.++ .+|..++++ +|+.|.
T Consensus       228 s~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  228 SLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLA  303 (565)
T ss_pred             HHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehh
Confidence            45666666666554 33333 336666666666666665 55555666666666666666666 355566666 566666


Q ss_pred             cCCCCCccc--------------------------------------cCcc---CCCCCCCCEeeCCCCCCCCCCccccC
Q 045304          241 LGSNKFSRS--------------------------------------IPAC---FSNLASLRTLSLGSNELTSIPLTFWN  279 (540)
Q Consensus       241 l~~n~l~~~--------------------------------------~~~~---~~~l~~L~~L~l~~n~l~~ip~~~~~  279 (540)
                      +.+|.+...                                      .+..   ...+.+.+.|+++.-+++.+|...+.
T Consensus       304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe  383 (565)
T KOG0472|consen  304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE  383 (565)
T ss_pred             hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence            666654200                                      0000   01123445555555555555554433


Q ss_pred             CCC---CcEEECCCCccc-----------------------CCCccccccccCcceEEcccceeeecCccccccCCCCcE
Q 045304          280 LKD---ILYLNFSSNFLT-----------------------GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQY  333 (540)
Q Consensus       280 l~~---L~~L~L~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  333 (540)
                      ..+   ...++++.|++.                       +.+|..++.+++|+.|+|++|-+. .+|..++.+..|+.
T Consensus       384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~  462 (565)
T KOG0472|consen  384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQT  462 (565)
T ss_pred             HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhhe
Confidence            322   344445444443                       344555566666666777666555 56666666666777


Q ss_pred             EeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCC
Q 045304          334 LFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELL  413 (540)
Q Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~  413 (540)
                      |+++.|+|. .+|..+..+..++.+-.++|++....|+.+..+.+|.+||+.+|.+....|.-+.+.++....+.|||+-
T Consensus       463 LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  463 LNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            777777665 5555555555555555556666655555577888888888888888876666677888888888888754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=3.6e-34  Score=260.81  Aligned_cols=387  Identities=30%  Similarity=0.443  Sum_probs=291.6

Q ss_pred             cccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCC
Q 045304            4 HEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNAS   83 (540)
Q Consensus         4 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~   83 (540)
                      +++.++..|.+|++++|++. .+|.+++.+..++.|+.++|.+. .+|..+ ..+.+|+.|+.++|++. .+|+.++.+.
T Consensus        62 ~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~-el~~~i~~~~  137 (565)
T KOG0472|consen   62 EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELK-ELPDSIGRLL  137 (565)
T ss_pred             HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhcccccee-ecCchHHHHh
Confidence            46778899999999999999 78999999999999999999998 899998 68999999999999998 7888999999


Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccccc
Q 045304           84 KLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS  163 (540)
Q Consensus        84 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~  163 (540)
                      .|..++..+|+++ ..|+.+..+.+|..+++.+|.+...      ++..-+++.|+++|...|.+.. +| ..++.+ .+
T Consensus       138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l------~~~~i~m~~L~~ld~~~N~L~t-lP-~~lg~l-~~  207 (565)
T KOG0472|consen  138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL------PENHIAMKRLKHLDCNSNLLET-LP-PELGGL-ES  207 (565)
T ss_pred             hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC------CHHHHHHHHHHhcccchhhhhc-CC-hhhcch-hh
Confidence            9999999999998 5788899999999999999999874      4445569999999999987754 55 678888 89


Q ss_pred             CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccc-cCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcC
Q 045304          164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG  242 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  242 (540)
                      |+.|++..|.+. .+| .|..|..|++++++.|++. .+|... .+++++..||+.+|++. ..|+.++.+.+|++||++
T Consensus       208 L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlS  283 (565)
T KOG0472|consen  208 LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLS  283 (565)
T ss_pred             hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhccc
Confidence            999999999997 566 7999999999999999998 566544 58999999999999999 789999999999999999


Q ss_pred             CCCCccccCccCCCCCCCCEeeCCCCCCCCCCc------------------------------------------cccCC
Q 045304          243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPL------------------------------------------TFWNL  280 (540)
Q Consensus       243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~------------------------------------------~~~~l  280 (540)
                      +|.++ .+|..++++ .|+.|.+.+|.+..|-.                                          ....+
T Consensus       284 NN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~  361 (565)
T KOG0472|consen  284 NNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI  361 (565)
T ss_pred             CCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence            99998 578889999 99999999997654210                                          01122


Q ss_pred             CCCcEEECCCCcccCCCcccccccc---CcceEEcccceeeecCccc------------------------cccCCCCcE
Q 045304          281 KDILYLNFSSNFLTGPLPLEIENLK---VLVGIDFSVNNFSGVIPTT------------------------IGSLKGLQY  333 (540)
Q Consensus       281 ~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~  333 (540)
                      .+.+.|++++-+++. +|+......   -.+.++++.|++. .+|..                        ++.+++|..
T Consensus       362 i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~  439 (565)
T KOG0472|consen  362 ITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF  439 (565)
T ss_pred             hhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence            356788888888884 454432222   2566777777766 34443                        444455555


Q ss_pred             EeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCC-CCCCCCCCcccccCCCC
Q 045304          334 LFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPR-GGSFGNFSAESFEGNEL  412 (540)
Q Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~~~~~~~~~~~~~~n~~  412 (540)
                      |+|++|.+. .+|..++.+..|+.||++.|++. .+|.++..+..++.+-.++|++...-|. -..+.+++..++..|..
T Consensus       440 L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl  517 (565)
T KOG0472|consen  440 LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL  517 (565)
T ss_pred             eecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence            555555444 44555555555555555555554 4454444444444444444444322222 12345556666666654


Q ss_pred             CC
Q 045304          413 LC  414 (540)
Q Consensus       413 ~c  414 (540)
                      ..
T Consensus       518 q~  519 (565)
T KOG0472|consen  518 QQ  519 (565)
T ss_pred             hh
Confidence            43

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=2.8e-32  Score=272.80  Aligned_cols=246  Identities=29%  Similarity=0.386  Sum_probs=142.3

Q ss_pred             cccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEE
Q 045304          161 SHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD  240 (540)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  240 (540)
                      +.+|++++++.|+++ .+|+++..+.+|+.+.+..|+++ .+|..+....+|+.|.+..|.+. .+|+....+..|++|+
T Consensus       240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            357888888888877 45688888888888888888885 67777777778888888888877 5667777788888888


Q ss_pred             cCCCCCccccCccCCCCCC-CCEeeCCCCCCCCCCcc-ccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee
Q 045304          241 LGSNKFSRSIPACFSNLAS-LRTLSLGSNELTSIPLT-FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS  318 (540)
Q Consensus       241 l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~ip~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  318 (540)
                      |..|++....+..|..... |+.|+.+.|.+...|.. -...+.|+.|++.+|.++...-..+.+...|+.|+|++|++.
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            8888876333222222221 44444444444444321 112334555555555555555555555555555555555555


Q ss_pred             ecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee-eCCCCC
Q 045304          319 GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG-EIPRGG  397 (540)
Q Consensus       319 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~-~~p~~~  397 (540)
                      ......+.++..|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++. .+|...
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            333334455555555555555555 44555555555555555555555 344 44455555555555555532 222222


Q ss_pred             CCCCCCcccccCCCC
Q 045304          398 SFGNFSAESFEGNEL  412 (540)
Q Consensus       398 ~~~~~~~~~~~~n~~  412 (540)
                      ...++..+++.||++
T Consensus       474 p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  474 PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCcccceeeccCCcc
Confidence            224445555555543

>PLN03210 Resistant to P

Probab=99.94  E-value=2.6e-25  Score=247.71  Aligned_cols=338  Identities=22%  Similarity=0.264  Sum_probs=247.1

Q ss_pred             cccCCCCCCCEEeccCcc------cccCCCccccCC-CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCC
Q 045304            4 HEIGNLRNLELLVLSHNK------LVGVIPTKVFNV-STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIP   76 (540)
Q Consensus         4 ~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (540)
                      .+|.++++|+.|.+..+.      +...+|..|..+ .+|+.|++.++.+. .+|..+  .+.+|+.|++.+|.+. .++
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccc
Confidence            457888899988886553      233466777665 46888999888876 788776  5788999999988877 567


Q ss_pred             ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccc
Q 045304           77 HFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTS  156 (540)
Q Consensus        77 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  156 (540)
                      ..+..+++|+.|+|+++.....+|. +..+++|++|++.+|.....     +|..+.++++|+.|++++|...+.+| ..
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~-----lp~si~~L~~L~~L~L~~c~~L~~Lp-~~  700 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE-----LPSSIQYLNKLEDLDMSRCENLEILP-TG  700 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc-----cchhhhccCCCCEEeCCCCCCcCccC-Cc
Confidence            7778888999999988765555664 77888999999988754433     66778888889999998876666666 33


Q ss_pred             cccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCcccc-------CcCCcc
Q 045304          157 VGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLE-------GSIPNN  229 (540)
Q Consensus       157 ~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-------~~~p~~  229 (540)
                      + .+ .+|+.|++++|...+.+|..   ..+|+.|++++|.+. .+|..+ .+++|++|++.++...       ...+..
T Consensus       701 i-~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        701 I-NL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             C-CC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhh
Confidence            3 34 68888888888766666643   457888888888876 556544 5677888877664321       111222


Q ss_pred             ccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC-CCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcc
Q 045304          230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN-ELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV  308 (540)
Q Consensus       230 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  308 (540)
                      +...++|+.|++++|...+.+|..++++++|+.|++++| .+..+|... .+++|+.|++++|.....+|..   ..+|+
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~  849 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNIS  849 (1153)
T ss_pred             hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccC
Confidence            334567888888888777778888888888888888886 456677665 6788888888887655555543   35788


Q ss_pred             eEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCc
Q 045304          309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNN  364 (540)
Q Consensus       309 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  364 (540)
                      .|+|++|.++ .+|.++..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus       850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            8888888887 577788888888888888854333567677778888888888774

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=5.6e-29  Score=249.32  Aligned_cols=245  Identities=32%  Similarity=0.389  Sum_probs=151.0

Q ss_pred             CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCe
Q 045304          135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQG  214 (540)
Q Consensus       135 l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  214 (540)
                      -.+|++++++.|++.+. | ..++.+ .+|+.+....|+++ .+|..+....+|+.|.+..|.+. -+|....+.+.|++
T Consensus       240 p~nl~~~dis~n~l~~l-p-~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~t  314 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNL-P-EWIGAC-ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT  314 (1081)
T ss_pred             cccceeeecchhhhhcc-h-HHHHhc-ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence            35788888888888765 4 677777 89999999999994 78888999999999999999998 46666788999999


Q ss_pred             eeeeCccccCcCCccc-cCCCC-CCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCC
Q 045304          215 LSLADNKLEGSIPNNI-CRLTE-LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSN  291 (540)
Q Consensus       215 L~l~~n~~~~~~p~~~-~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n  291 (540)
                      |+|..|.+. .+|+.+ ..+.. |..|..+.|.+.......=..++.|+.|.+.+|.+++ .-..+.+...|+.|+|++|
T Consensus       315 LdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  315 LDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             eeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence            999999987 455432 22222 4444445454432211111223445555555555555 2223444455555666665


Q ss_pred             cccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCc
Q 045304          292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV  371 (540)
Q Consensus       292 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  371 (540)
                      ++.......+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++...-.
T Consensus       394 rL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~  470 (1081)
T KOG0618|consen  394 RLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP  470 (1081)
T ss_pred             ccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence            555444444555555555566666555 44555555555555555555555 444 455555555666655555533222


Q ss_pred             cccCCCCCCeEEcccCc
Q 045304          372 SLEKLSYLEDLNLSFNK  388 (540)
Q Consensus       372 ~~~~~~~L~~l~l~~n~  388 (540)
                      .....++|++||+++|.
T Consensus       471 ~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  471 EALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhCCCcccceeeccCCc
Confidence            22223555555555554

>PLN03210 Resistant to P

Probab=99.93  E-value=1.5e-24  Score=241.59  Aligned_cols=342  Identities=23%  Similarity=0.253  Sum_probs=268.7

Q ss_pred             CCccccCCCCCCEEEcccCc------CccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccC
Q 045304           26 IPTKVFNVSTLKVFEVSNNS------LSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFI   99 (540)
Q Consensus        26 ~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~   99 (540)
                      .+.+|.+|.+|+.|.+..+.      +...+|..+..-.++|+.|++.++.+. .+|..+ ...+|+.|++.+|.+. .+
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L  626 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL  626 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence            34678899999999997653      233566665322357999999998876 677766 5689999999999987 56


Q ss_pred             CccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCC
Q 045304          100 PDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP  179 (540)
Q Consensus       100 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~  179 (540)
                      +..+..+++|+.|+|+++.....     +| .+..+++|+.|++++|.....+| ..++.+ .+|+.|++++|...+.+|
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~-----ip-~ls~l~~Le~L~L~~c~~L~~lp-~si~~L-~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKE-----IP-DLSMATNLETLKLSDCSSLVELP-SSIQYL-NKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCc-----CC-ccccCCcccEEEecCCCCccccc-hhhhcc-CCCCEEeCCCCCCcCccC
Confidence            77788999999999998754332     33 47788999999999998777777 677777 799999999988777888


Q ss_pred             hhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc-------cccCc
Q 045304          180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS-------RSIPA  252 (540)
Q Consensus       180 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-------~~~~~  252 (540)
                      ..+ ++++|+.|++++|.....+|..   ..+|+.|++++|.+. .+|..+ .+++|++|++..+...       ...+.
T Consensus       699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~  772 (1153)
T PLN03210        699 TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL  772 (1153)
T ss_pred             CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchh
Confidence            766 7899999999998766666643   468899999999987 567655 6788888888764321       11222


Q ss_pred             cCCCCCCCCEeeCCCCCC-CCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCC
Q 045304          253 CFSNLASLRTLSLGSNEL-TSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGL  331 (540)
Q Consensus       253 ~~~~l~~L~~L~l~~n~l-~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  331 (540)
                      .+..+++|+.|++++|.. ..+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|
T Consensus       773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL  848 (1153)
T PLN03210        773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNI  848 (1153)
T ss_pred             hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---cccc
Confidence            233457899999999864 4599999999999999999987666777766 6899999999998665555543   3689


Q ss_pred             cEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcc
Q 045304          332 QYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL  389 (540)
Q Consensus       332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l  389 (540)
                      +.|+|++|.++ .+|.++..+++|+.|++++|+--..+|..+..++.|+.+++++|.-
T Consensus       849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            99999999998 7888999999999999999654446777788899999999998863

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=3.3e-25  Score=202.25  Aligned_cols=365  Identities=23%  Similarity=0.230  Sum_probs=230.9

Q ss_pred             CCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccC-CcccccCCccccCCCCCCEE
Q 045304           10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRS-NNFCGTIPHFIFNASKLSLL   88 (540)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L   88 (540)
                      .+-..|+|..|.|+.+.|.+|+.+++|+.|||+.|.|+ .|.+..|.++++|..|-+.+ |+|+......|+++..|+.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            36678899999999777789999999999999999998 77777778999888877766 88886666778899999999


Q ss_pred             EccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCc-----------ccc
Q 045304           89 ELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG-----------TSV  157 (540)
Q Consensus        89 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-----------~~~  157 (540)
                      .+.-|++.....+.|..+++|..|.+.+|.+..+..     ..+..+..++.+.+..|.+......           ..+
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~-----~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet  220 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK-----GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET  220 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc-----ccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence            999999988888889999999999999998887533     2577788888888887764321000           000


Q ss_pred             ccc---------------------cccCcEE---EccCCcceecCC-hhccCCCCCCeeeccCCccccccCccccCCCCC
Q 045304          158 GNL---------------------SHSLEYF---YMPNCNVSGGIP-EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKL  212 (540)
Q Consensus       158 ~~l---------------------~~~L~~L---~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  212 (540)
                      +..                     ...++.+   ....+...+..| ..|..+++|+.|++++|+++.+-+.+|.+...+
T Consensus       221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l  300 (498)
T KOG4237|consen  221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL  300 (498)
T ss_pred             ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence            000                     0011111   111222222233 346777888888888888887777778888888


Q ss_pred             CeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC---C---Cccc---------
Q 045304          213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS---I---PLTF---------  277 (540)
Q Consensus       213 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---i---p~~~---------  277 (540)
                      ++|.|..|++...-...|.++..|+.|+|++|+|+...|.+|..+.+|.+|++-.|.+.-   +   -+++         
T Consensus       301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~  380 (498)
T KOG4237|consen  301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP  380 (498)
T ss_pred             hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence            888888887765555667777788888888888887777778777778887776665432   1   0000         


Q ss_pred             --cCCCCCcEEECCCCcccCC---Ccccc---------ccccCcce-EEcccceeeecCccccccCCCCcEEeCcCccCc
Q 045304          278 --WNLKDILYLNFSSNFLTGP---LPLEI---------ENLKVLVG-IDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ  342 (540)
Q Consensus       278 --~~l~~L~~L~L~~n~l~~~---~~~~~---------~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  342 (540)
                        .....++.+.+++..+...   .|...         ..++-+.+ ...|+..+. .+|..+.  ...+++++.+|.++
T Consensus       381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~  457 (498)
T KOG4237|consen  381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT  457 (498)
T ss_pred             CCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc
Confidence              0111233333333322110   11100         00111111 112222221 2222221  23456677777776


Q ss_pred             ccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304          343 GSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN  387 (540)
Q Consensus       343 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  387 (540)
                       .+|..  .+.+| .+|+++|++....-..|.+++.|.++-+++|
T Consensus       458 -~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  458 -SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             -ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence             55554  45556 6777777776555556667777777766654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=4.1e-22  Score=206.44  Aligned_cols=264  Identities=25%  Similarity=0.367  Sum_probs=135.5

Q ss_pred             CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304           11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL   90 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L   90 (540)
                      .-..|+++.+.++ .+|..+.  ++|+.|++.+|.++ .+|.    .+++|++|++++|+++ .+|..   .++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence            3456667777666 4565554  36667777777666 4553    2466666666666666 33432   245666666


Q ss_pred             cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEcc
Q 045304           91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP  170 (540)
Q Consensus        91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~  170 (540)
                      ++|.+.. +|..   ..+|+.|++++|+++..+      .   ..++|+.|++++|.+.+. | .    .+..|+.|.++
T Consensus       270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP------~---~p~~L~~LdLS~N~L~~L-p-~----lp~~L~~L~Ls  330 (788)
T PRK15387        270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLP------V---LPPGLQELSVSDNQLASL-P-A----LPSELCKLWAY  330 (788)
T ss_pred             cCCchhh-hhhc---hhhcCEEECcCCcccccc------c---cccccceeECCCCccccC-C-C----Ccccccccccc
Confidence            6666552 3322   244556666666655431      1   124566666666655542 1 0    11334444454


Q ss_pred             CCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc
Q 045304          171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI  250 (540)
Q Consensus       171 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  250 (540)
                      +|.+++ +|..                           ..+|+.|++++|++++ +|..   ..+|+.|++++|.++. +
T Consensus       331 ~N~L~~-LP~l---------------------------p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-L  377 (788)
T PRK15387        331 NNQLTS-LPTL---------------------------PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-L  377 (788)
T ss_pred             cCcccc-cccc---------------------------ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-C
Confidence            444432 2221                           1244455555555442 3321   1344445555555542 3


Q ss_pred             CccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCC
Q 045304          251 PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKG  330 (540)
Q Consensus       251 ~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  330 (540)
                      |..   ..+|+.|++++|.++.+|..   .++|+.|++++|++.+ +|..   ...|+.|++++|+++ .+|..+..+++
T Consensus       378 P~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~  446 (788)
T PRK15387        378 PAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSS  446 (788)
T ss_pred             ccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccC
Confidence            322   23455555555555555432   1345555566555553 3332   124555666666665 45666666666


Q ss_pred             CcEEeCcCccCcccCCccc
Q 045304          331 LQYLFVGYNRLQGSIPYSI  349 (540)
Q Consensus       331 L~~L~l~~n~l~~~~~~~~  349 (540)
                      |+.|+|++|.+++..+..+
T Consensus       447 L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        447 ETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCeEECCCCCCCchHHHHH
Confidence            6666666666666555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=9.8e-22  Score=203.66  Aligned_cols=264  Identities=26%  Similarity=0.320  Sum_probs=159.6

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCC
Q 045304           60 NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLT  139 (540)
Q Consensus        60 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~  139 (540)
                      .-..|+++++.++ .+|..+.  .+|+.|++.+|+++. +|.   .+++|++|++++|+++..+.         ..++|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~---------lp~sL~  265 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV---------LPPGLL  265 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC---------cccccc
Confidence            3556777777766 5565553  367777777777663 343   24667777777777765321         124667


Q ss_pred             EEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeC
Q 045304          140 YIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLAD  219 (540)
Q Consensus       140 ~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  219 (540)
                      .|++++|.+... |     .++.+|+.|++++|+++ .+|.   ..++|+.|++++|++++ +|..   ...|+.|++++
T Consensus       266 ~L~Ls~N~L~~L-p-----~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~  331 (788)
T PRK15387        266 ELSIFSNPLTHL-P-----ALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN  331 (788)
T ss_pred             eeeccCCchhhh-h-----hchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence            777777766532 1     12245667777777665 3443   23567777777777764 3432   23566677777


Q ss_pred             ccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCcc
Q 045304          220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL  299 (540)
Q Consensus       220 n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~  299 (540)
                      |.+++ +|..   ..+|+.|+|++|++++ +|..   .++|+.|++++|.++.+|...   .+|+.|++++|.+.+ +|.
T Consensus       332 N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~-LP~  399 (788)
T PRK15387        332 NQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTS-LPV  399 (788)
T ss_pred             Ccccc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcccc---cccceEEecCCcccC-CCC
Confidence            77763 4431   1467777777777763 4432   246667777777777766532   456777777777663 333


Q ss_pred             ccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccc
Q 045304          300 EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSL  373 (540)
Q Consensus       300 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  373 (540)
                      .   ..+|+.|++++|.+++ +|..+   .+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus       400 l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        400 L---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             c---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            2   2456667777777663 44322   35666777777766 566666667777777777777776655544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=7.5e-24  Score=193.48  Aligned_cols=353  Identities=23%  Similarity=0.253  Sum_probs=260.5

Q ss_pred             CC-cccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEccc-CcCccccchhhhcCCCCCCEEEccCCcccccCCccc
Q 045304            2 IP-HEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSN-NSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFI   79 (540)
Q Consensus         2 lp-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l   79 (540)
                      || .+|+.+++|+.||||+|+|+.+-|++|.++..|.+|-+.+ |+|+ .+|...|.++..|+.|.+.-|++.....+.|
T Consensus        82 iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al  160 (498)
T KOG4237|consen   82 IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDAL  160 (498)
T ss_pred             CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence            44 4699999999999999999999999999999999887766 9998 9999999999999999999999998888999


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCC-Cc------cccccCCC------------------
Q 045304           80 FNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS-DL------NFLSSLSN------------------  134 (540)
Q Consensus        80 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~------~~~~~l~~------------------  134 (540)
                      ..+++|..|.+.+|.+..+.-..|..+..++++.+..|.+...-. .|      ..+..++.                  
T Consensus       161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~  240 (498)
T KOG4237|consen  161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED  240 (498)
T ss_pred             HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence            999999999999999985555589999999999988876332100 00      00011111                  


Q ss_pred             -------CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCcccc
Q 045304          135 -------CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLS  207 (540)
Q Consensus       135 -------l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  207 (540)
                             ...+..--.+.+......|...+..+ ++|+.|++++|++++.-+.+|.....++.|.|..|++...-...|.
T Consensus       241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~  319 (498)
T KOG4237|consen  241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ  319 (498)
T ss_pred             hhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh
Confidence                   11111112234445666676678888 8999999999999999999999999999999999999877677899


Q ss_pred             CCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccc-----------------cCccCCCCCCCCEeeCCCCCC
Q 045304          208 KLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRS-----------------IPACFSNLASLRTLSLGSNEL  270 (540)
Q Consensus       208 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~l~~L~~L~l~~n~l  270 (540)
                      ++..|+.|+|.+|+++-.-|.+|..+.+|.+|.+-.|.+...                 .|.. .....++.+.++++.+
T Consensus       320 ~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C-q~p~~~~~~~~~dv~~  398 (498)
T KOG4237|consen  320 GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC-QSPGFVRQIPISDVAF  398 (498)
T ss_pred             ccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC-CCCchhccccchhccc
Confidence            999999999999999988999999999999999988865310                 1110 1122456666666554


Q ss_pred             CCC----Cccc---------cCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCc
Q 045304          271 TSI----PLTF---------WNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVG  337 (540)
Q Consensus       271 ~~i----p~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  337 (540)
                      .+.    |+..         ..++-+.++.=-.|.....+|..+.  ..-+.+.+.+|.++ .+|..  .+.+| .++++
T Consensus       399 ~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls  472 (498)
T KOG4237|consen  399 GDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLS  472 (498)
T ss_pred             cccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccc
Confidence            432    2211         1122233222122222224443332  34566788999888 56665  55677 89999


Q ss_pred             CccCcccCCcccCCCCCCCEEECCCC
Q 045304          338 YNRLQGSIPYSIGDLISLKSLNLSNN  363 (540)
Q Consensus       338 ~n~l~~~~~~~~~~l~~L~~L~l~~n  363 (540)
                      +|++.-.-...|.++.+|.+|-+++|
T Consensus       473 ~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  473 NNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cCceehhhcccccchhhhheeEEecC
Confidence            99988666778888889999888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=1.5e-20  Score=196.15  Aligned_cols=203  Identities=23%  Similarity=0.406  Sum_probs=104.1

Q ss_pred             CCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 045304           10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLE   89 (540)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~   89 (540)
                      .+...|+++++.++ .+|..+.  ++|+.|++++|.++ .+|..++   ++|+.|++++|.++ .+|..+.  .+|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence            35566777777776 4555442  46777777777776 5666542   46777777777766 4454432  3567777


Q ss_pred             ccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEc
Q 045304           90 LGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM  169 (540)
Q Consensus        90 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l  169 (540)
                      |++|.+. .+|..+.  ++|+.|++++|.+...      |..+.  ++|+.|++++|.+.+. | ..   ++.+|+.|++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L------P~~l~--~sL~~L~Ls~N~Lt~L-P-~~---lp~sL~~L~L  311 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKISCL------PENLP--EELRYLSVYDNSIRTL-P-AH---LPSGITHLNV  311 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccCcc------ccccC--CCCcEEECCCCccccC-c-cc---chhhHHHHHh
Confidence            7777666 3454442  4566666666666543      22221  3566666666665532 2 11   1134555555


Q ss_pred             cCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc
Q 045304          170 PNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS  247 (540)
Q Consensus       170 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  247 (540)
                      ++|.++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|.++ .+|..+.  ++|++|++++|.++
T Consensus       312 s~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        312 QSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             cCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence            5555442 232221  344455555554442 333221  34444444444444 2333221  34444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=3.5e-20  Score=193.44  Aligned_cols=246  Identities=23%  Similarity=0.368  Sum_probs=115.3

Q ss_pred             CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 045304           35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL  114 (540)
Q Consensus        35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  114 (540)
                      +...|+++++.++ .+|..+   .++|+.|+|++|.++ .+|..+.  .+|++|++++|.++ .+|..+.  .+|+.|+|
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            4455666655555 455433   235556666666555 3443332  35555555555555 2333322  24555555


Q ss_pred             cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeecc
Q 045304          115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG  194 (540)
Q Consensus       115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  194 (540)
                      ++|.+...      |..+.  .+|+.|++++|.+..                           +|..+.  ++|+.|+++
T Consensus       249 s~N~L~~L------P~~l~--s~L~~L~Ls~N~L~~---------------------------LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        249 SINRITEL------PERLP--SALQSLDLFHNKISC---------------------------LPENLP--EELRYLSVY  291 (754)
T ss_pred             cCCccCcC------ChhHh--CCCCEEECcCCccCc---------------------------cccccC--CCCcEEECC
Confidence            55555432      11111  245555555555442                           333222  244555555


Q ss_pred             CCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC
Q 045304          195 GNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP  274 (540)
Q Consensus       195 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip  274 (540)
                      +|++++ +|..+.  ++|+.|++++|.++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++.+|
T Consensus       292 ~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP  362 (754)
T PRK15370        292 DNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLP  362 (754)
T ss_pred             CCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCC
Confidence            554442 232221  245555555555542 333221  345555555555543 333332  45555555555555555


Q ss_pred             ccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccc----ccCCCCcEEeCcCccCc
Q 045304          275 LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTI----GSLKGLQYLFVGYNRLQ  342 (540)
Q Consensus       275 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~  342 (540)
                      ..+.  ++|+.|++++|.+. .+|..+.  ..|+.|++++|+++ .+|..+    ..++.+..|++.+|.++
T Consensus       363 ~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        363 ETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            4332  35555555555555 2333332  24555556666555 233322    23355566666666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=3.4e-20  Score=180.27  Aligned_cols=89  Identities=20%  Similarity=0.242  Sum_probs=48.3

Q ss_pred             cccccCcceEEcccceeeecCccccc-----cCCCCcEEeCcCccCcc----cCCcccCCCCCCCEEECCCCcCccc---
Q 045304          301 IENLKVLVGIDFSVNNFSGVIPTTIG-----SLKGLQYLFVGYNRLQG----SIPYSIGDLISLKSLNLSNNNLSGT---  368 (540)
Q Consensus       301 ~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~---  368 (540)
                      +..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++.    .+...+..+++|+++++++|.++..   
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~  296 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ  296 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence            33445555556665555532222211     13567777777776651    2233445556777777777777643   


Q ss_pred             -cCccccCC-CCCCeEEcccCcc
Q 045304          369 -IPVSLEKL-SYLEDLNLSFNKL  389 (540)
Q Consensus       369 -~~~~~~~~-~~L~~l~l~~n~l  389 (540)
                       ....+... +.|+.+++.+|++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         297 LLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhhcCCchhhcccCCCCC
Confidence             22333334 5677777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=5.6e-20  Score=178.79  Aligned_cols=62  Identities=21%  Similarity=0.156  Sum_probs=33.8

Q ss_pred             EEEccCCccc-ccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCC
Q 045304           87 LLELGDNSFS-GFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLD  149 (540)
Q Consensus        87 ~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  149 (540)
                      .|+|..+.++ ......+..+.+|+.|++.++.++..... .++..+...++++.++++++.+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~-~i~~~l~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK-ALASALRPQPSLKELCLSLNETG   64 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHH-HHHHHHhhCCCceEEeccccccC
Confidence            3555566555 22334455566677777777766432111 13444555666677777666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=7.6e-20  Score=148.44  Aligned_cols=155  Identities=29%  Similarity=0.506  Sum_probs=87.2

Q ss_pred             cCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCE
Q 045304          183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRT  262 (540)
Q Consensus       183 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  262 (540)
                      .++.+++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++.|++. ..|..|+.+|.|+.
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            34455666666666666 44445666666666666666666 45666666666666666666664 56666666666666


Q ss_pred             eeCCCCCCCC--CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304          263 LSLGSNELTS--IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR  340 (540)
Q Consensus       263 L~l~~n~l~~--ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  340 (540)
                      ||+.+|++.+  +|..|+.++.|+.|+|++|.+. .+|..++.+++|+.|.+..|.+- .+|..++.+..|++|++.+|+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            6666666654  5555555555555555555544 33444444444444444444443 334444444444444444444


Q ss_pred             Cc
Q 045304          341 LQ  342 (540)
Q Consensus       341 l~  342 (540)
                      ++
T Consensus       185 l~  186 (264)
T KOG0617|consen  185 LT  186 (264)
T ss_pred             ee
Confidence            43

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.6e-18  Score=140.87  Aligned_cols=162  Identities=28%  Similarity=0.493  Sum_probs=141.9

Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL  241 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  241 (540)
                      .++..|.+++|.++ .+|+.+..+.+|+.|++.+|++. .+|..++.++.|+.|++.-|++. .+|..|+.++.|+.||+
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            45666777777776 56777889999999999999998 67888999999999999999988 78999999999999999


Q ss_pred             CCCCCcc-ccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeec
Q 045304          242 GSNKFSR-SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV  320 (540)
Q Consensus       242 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  320 (540)
                      .+|++.. .+|..|..++.|+.|.+++|.+.-+|..++.+++|+.|.+.+|.+. .+|..++.++.|+.|++.+|.++ .
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v  187 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V  187 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence            9998864 5788888899999999999999999999999999999999999987 78999999999999999999998 6


Q ss_pred             CccccccC
Q 045304          321 IPTTIGSL  328 (540)
Q Consensus       321 ~~~~~~~l  328 (540)
                      +|..++++
T Consensus       188 lppel~~l  195 (264)
T KOG0617|consen  188 LPPELANL  195 (264)
T ss_pred             cChhhhhh
Confidence            67666543

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1.5e-14  Score=151.08  Aligned_cols=118  Identities=36%  Similarity=0.591  Sum_probs=101.6

Q ss_pred             CcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcc
Q 045304          306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLS  385 (540)
Q Consensus       306 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~  385 (540)
                      .++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceeeCCCCC--CCCCCCcccccCCCCCCCCCCCCCCCCC
Q 045304          386 FNKLAGEIPRGG--SFGNFSAESFEGNELLCGSPNLRVPPCK  425 (540)
Q Consensus       386 ~n~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~~~~~~~~~~  425 (540)
                      +|+++|.+|..-  .........+.+|+.+|+.|..  ++|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l--~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL--RACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCC--CCCc
Confidence            999999998641  1223456778999999987653  5674

>PLN03150 hypothetical protein; Provisional

Probab=99.32  E-value=4.9e-12  Score=132.27  Aligned_cols=113  Identities=37%  Similarity=0.525  Sum_probs=104.0

Q ss_pred             CCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECC
Q 045304          282 DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLS  361 (540)
Q Consensus       282 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  361 (540)
                      .++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCccccCccccCC-CCCCeEEcccCcceeeCC
Q 045304          362 NNNLSGTIPVSLEKL-SYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       362 ~n~l~~~~~~~~~~~-~~L~~l~l~~n~l~~~~p  394 (540)
                      +|+++|.+|..+... ..+..+++.+|...+..|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999988653 467789999998766544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=9.9e-14  Score=133.56  Aligned_cols=167  Identities=31%  Similarity=0.464  Sum_probs=95.1

Q ss_pred             EccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc
Q 045304          168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS  247 (540)
Q Consensus       168 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  247 (540)
                      +++.|.+. .+|..+..+-.|+.+.+..|.+. .+|..+..+..|+.++|+.|+++ .+|..++.++ |+.|.+++|+++
T Consensus        81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~  156 (722)
T KOG0532|consen   81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT  156 (722)
T ss_pred             hccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc
Confidence            34444443 44444555555555555555555 45555555566666666666655 4555555554 555666666554


Q ss_pred             cccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccccc
Q 045304          248 RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS  327 (540)
Q Consensus       248 ~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  327 (540)
                       .+|..++..+.|..|+.+.|.+..+|..+.++.+|+.|++..|++. .+|..+. .-.|..||+|.|+++ .+|..|..
T Consensus       157 -~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~  232 (722)
T KOG0532|consen  157 -SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRK  232 (722)
T ss_pred             -cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhh
Confidence             4555555555666666666666666666666666666666666655 3333444 234556666666665 55666666


Q ss_pred             CCCCcEEeCcCccCc
Q 045304          328 LKGLQYLFVGYNRLQ  342 (540)
Q Consensus       328 l~~L~~L~l~~n~l~  342 (540)
                      ++.|++|-|.+|.++
T Consensus       233 m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  233 MRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhheeeeeccCCCC
Confidence            666666666666665

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.28  E-value=3.3e-12  Score=124.04  Aligned_cols=63  Identities=48%  Similarity=0.706  Sum_probs=55.7

Q ss_pred             ccccccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhcC
Q 045304          478 TWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN  540 (540)
Q Consensus       478 ~~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~~  540 (540)
                      ..+.|+|.|++.||++|+++++||+||||.||||.++||+.||||++.....+..++|.+||+
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~  123 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVE  123 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHH
Confidence            567899999999999999999999999999999999999999999997654321577999984

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=4.9e-13  Score=124.98  Aligned_cols=210  Identities=20%  Similarity=0.264  Sum_probs=127.4

Q ss_pred             cCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccc
Q 045304           80 FNASKLSLLELGDNSFSGFIP-DTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG  158 (540)
Q Consensus        80 ~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  158 (540)
                      +++.+|+.+.|.++....... .....|++++.|+|+.|-+.....   +......+++|+.|+++.|.+..... ....
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~---v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP---VLKIAEQLPSLENLNLSSNRLSNFIS-SNTT  193 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH---HHHHHHhcccchhcccccccccCCcc-ccch
Confidence            466788888888887663221 245678888888888887765422   34446678888888888888776554 2222


Q ss_pred             cccccCcEEEccCCcceec-CChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCC--ccccCCCC
Q 045304          159 NLSHSLEYFYMPNCNVSGG-IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP--NNICRLTE  235 (540)
Q Consensus       159 ~l~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~  235 (540)
                      ...+.|+.|.++.|.++-. +-..+..+|+|+.|++..|...........-++.|+.|+|++|.+-. .+  ...+.++.
T Consensus       194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~  272 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccc
Confidence            2336788888888877632 22234556778888887775332333334456677777777776652 22  34556677


Q ss_pred             CCeEEcCCCCCccc-cCcc-----CCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEEECCCCccc
Q 045304          236 LYELDLGSNKFSRS-IPAC-----FSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       236 L~~L~l~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L~L~~n~l~  294 (540)
                      |+.|+++.+.+... .|+.     ...+++|++|++..|++.+++.  .+..+++|+.|.+..|.+.
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            77777777766532 2222     2345666666666666655443  2333444444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=1.1e-13  Score=133.28  Aligned_cols=193  Identities=27%  Similarity=0.422  Sum_probs=157.2

Q ss_pred             CCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeC
Q 045304          186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSL  265 (540)
Q Consensus       186 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  265 (540)
                      .--...+++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++|||+.|+++ .+|..+..++ |+.|-+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            34456788999988 78888888888999999999887 78888999999999999999987 5666666654 899999


Q ss_pred             CCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccC
Q 045304          266 GSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI  345 (540)
Q Consensus       266 ~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  345 (540)
                      ++|+++.+|..++....|..|+.+.|++. .+|..++.+..|+.|.+..|++. .+|..+..+ .|..||++.|+++ .+
T Consensus       151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YL  226 (722)
T ss_pred             ecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ec
Confidence            99999999998888889999999999988 67788888999999999999887 566677754 6889999999998 88


Q ss_pred             CcccCCCCCCCEEECCCCcCccccCccccC---CCCCCeEEcccC
Q 045304          346 PYSIGDLISLKSLNLSNNNLSGTIPVSLEK---LSYLEDLNLSFN  387 (540)
Q Consensus       346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~l~l~~n  387 (540)
                      |..|..+..|++|-|.+|.+. ..|..+..   ..-.++|+..-|
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            999999999999999999988 55554432   222345555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=6.5e-12  Score=125.63  Aligned_cols=178  Identities=38%  Similarity=0.564  Sum_probs=81.8

Q ss_pred             CCCCeeeeeCccccCcCCccccCCC-CCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEEC
Q 045304          210 QKLQGLSLADNKLEGSIPNNICRLT-ELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNF  288 (540)
Q Consensus       210 ~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L  288 (540)
                      +.++.+++.+|.++ .++.....+. +|+.|+++.|.+. .+|..+..+++|+.|++++|+++.+|......+.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            33444444444444 2333333332 4444444444443 2223344444444444444444444444334444444444


Q ss_pred             CCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304          289 SSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT  368 (540)
Q Consensus       289 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  368 (540)
                      ++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|+++..
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc
Confidence            444444 23333233334555555555322 23344445555555555555554 2244455555556666666655532


Q ss_pred             cCccccCCCCCCeEEcccCcceeeCC
Q 045304          369 IPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       369 ~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      .+  +..+.+++.+++++|.+....|
T Consensus       271 ~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         271 SS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cc--ccccCccCEEeccCccccccch
Confidence            22  5555556666666655554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.24  E-value=1.1e-11  Score=124.06  Aligned_cols=185  Identities=35%  Similarity=0.556  Sum_probs=126.8

Q ss_pred             ccCCCCCCeeeccCCccccccCccccCCC-CCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCC
Q 045304          182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQ-KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL  260 (540)
Q Consensus       182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  260 (540)
                      +..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|+++.|+++ .+|...+..++|
T Consensus       112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence            334456677777777766 4444444553 7777777777776 45455667777777777777776 344444466777


Q ss_pred             CEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304          261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR  340 (540)
Q Consensus       261 ~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  340 (540)
                      +.|++++|+++.+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..++++++|++++|.
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccc
Confidence            7778888877777776555566777778777533 34555667777777777777776 336667777888888888888


Q ss_pred             CcccCCcccCCCCCCCEEECCCCcCccccCccc
Q 045304          341 LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSL  373 (540)
Q Consensus       341 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  373 (540)
                      ++. ++. ++.+.+++.|++++|.+....|...
T Consensus       267 i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         267 ISS-ISS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             ccc-ccc-ccccCccCEEeccCccccccchhhh
Confidence            874 333 7788888888888888886665544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.16  E-value=3.1e-11  Score=128.96  Aligned_cols=132  Identities=24%  Similarity=0.288  Sum_probs=104.4

Q ss_pred             CCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCc--CccccchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 045304            7 GNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNS--LSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASK   84 (540)
Q Consensus         7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~   84 (540)
                      .+....+.+.+.+|.+. .++... .+++|++|-+..|.  +. .++..+|..++.|++|||++|.--+.+|..++++-+
T Consensus       520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            33467788888888776 344433 44589999999986  44 788887889999999999998766789999999999


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCC
Q 045304           85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP  147 (540)
Q Consensus        85 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~  147 (540)
                      |++|+++++.+. .+|..++++..|.+|++..+.....     ++.....+++|++|.+....
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~-----~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLES-----IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheecccccccccc-----ccchhhhcccccEEEeeccc
Confidence            999999999988 7899999999999999988765443     33445568888988886654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=5.8e-12  Score=117.89  Aligned_cols=208  Identities=24%  Similarity=0.256  Sum_probs=125.8

Q ss_pred             cCCCCCCeeeccCCccccccC--ccccCCCCCCeeeeeCccccCc--CCccccCCCCCCeEEcCCCCCccccCccC-CCC
Q 045304          183 SNLTNLIIIYLGGNKLNGSIP--ITLSKLQKLQGLSLADNKLEGS--IPNNICRLTELYELDLGSNKFSRSIPACF-SNL  257 (540)
Q Consensus       183 ~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l  257 (540)
                      .++.+|+.+.+++.... ..+  .....|++++.|+|+.|-+..-  +......+++|+.|+++.|.+........ ..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            34566666666666554 222  2445667777777777655422  11233456777777777776653222211 235


Q ss_pred             CCCCEeeCCCCCCCC--CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecC-ccccccCCCCcEE
Q 045304          258 ASLRTLSLGSNELTS--IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVI-PTTIGSLKGLQYL  334 (540)
Q Consensus       258 ~~L~~L~l~~n~l~~--ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L  334 (540)
                      +.|+.|.++.|.++.  +-.....+|+|+.|+|..|.....-......+..|+.|||++|++.... -...+.++.|..|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            677778888777764  4445556677888888877533333333445667788888888775332 1345677788888


Q ss_pred             eCcCccCcccC-Ccc-----cCCCCCCCEEECCCCcCccc-cCccccCCCCCCeEEcccCccee
Q 045304          335 FVGYNRLQGSI-PYS-----IGDLISLKSLNLSNNNLSGT-IPVSLEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       335 ~l~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~l~~  391 (540)
                      +++.+.+...- |+.     ...+++|++|+++.|++... .-..+..+++|+.+.+..|++..
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            88888776432 222     24567888888888887522 11234556677777777777653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=1.1e-11  Score=110.49  Aligned_cols=135  Identities=24%  Similarity=0.222  Sum_probs=107.1

Q ss_pred             CCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcE
Q 045304          254 FSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQY  333 (540)
Q Consensus       254 ~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  333 (540)
                      ......|+.+|+++|.++.+.+...-+|.++.|++++|.+...  +.+..+.+|+.||||+|.++ .+..+-..+.+.++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            3344578889999999988888888888999999999988733  23778899999999999887 45566677889999


Q ss_pred             EeCcCccCcccCCcccCCCCCCCEEECCCCcCcccc-CccccCCCCCCeEEcccCcceeeC
Q 045304          334 LFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTI-PVSLEKLSYLEDLNLSFNKLAGEI  393 (540)
Q Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~l~~~~  393 (540)
                      |.|+.|.+..  -..+..+-+|..||+++|++.... ...++++|-|+.+.+.+|++.+.+
T Consensus       357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            9999998852  245667778999999999987442 245788999999999999998643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=4.6e-12  Score=115.39  Aligned_cols=183  Identities=23%  Similarity=0.235  Sum_probs=115.6

Q ss_pred             cCCCCCCeeeeeCccccCcCCcc----ccCCCCCCeEEcCCCCCcccc-------------CccCCCCCCCCEeeCCCCC
Q 045304          207 SKLQKLQGLSLADNKLEGSIPNN----ICRLTELYELDLGSNKFSRSI-------------PACFSNLASLRTLSLGSNE  269 (540)
Q Consensus       207 ~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~  269 (540)
                      ..++.|++++|++|-+....++.    +.+++.|++|+|.+|.+...-             ......-+.|+++...+|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            34445555555555544332222    234555566666555543110             1112345678888888888


Q ss_pred             CCCCC-----ccccCCCCCcEEECCCCcccCC----CccccccccCcceEEcccceeeec----CccccccCCCCcEEeC
Q 045304          270 LTSIP-----LTFWNLKDILYLNFSSNFLTGP----LPLEIENLKVLVGIDFSVNNFSGV----IPTTIGSLKGLQYLFV  336 (540)
Q Consensus       270 l~~ip-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l  336 (540)
                      +..-+     ..+...+.|+.+.+..|.+...    +...+..++.|+.|||.+|-++..    +...+..++.|++|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            77633     3466667888888888877522    234567788888888888887643    3345667788889999


Q ss_pred             cCccCcccCCcc----c-CCCCCCCEEECCCCcCccc----cCccccCCCCCCeEEcccCcc
Q 045304          337 GYNRLQGSIPYS----I-GDLISLKSLNLSNNNLSGT----IPVSLEKLSYLEDLNLSFNKL  389 (540)
Q Consensus       337 ~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~l  389 (540)
                      ++|.+...-..+    + ...|+|+.|++.+|.++..    +..++...+.|..|++++|.+
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            988876432222    2 3467889999999988732    223455678888999988877

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=3.8e-11  Score=102.67  Aligned_cols=107  Identities=26%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             CCCCCCEEeccCcccccCCCcccc-CCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccc-cCCCCC
Q 045304            8 NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFI-FNASKL   85 (540)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L   85 (540)
                      +..++++|+|++|.++. + +.++ .+.+|+.|++++|.++ .++..  ..+++|+.|++++|.++. +...+ ..+++|
T Consensus        17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~l--~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEGL--PGLPRLKTLDLSNNRISS-ISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccCc--cChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence            34445556666665552 2 2233 3455556666665555 34322  345555555555555552 22222 235555


Q ss_pred             CEEEccCCcccccC-CccccCCCCCCEEECcCcccc
Q 045304           86 SLLELGDNSFSGFI-PDTFGNLRNLNKVTLYNNYLT  120 (540)
Q Consensus        86 ~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~  120 (540)
                      ++|++++|++.... -..+..+++|++|++.+|.+.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            55555555554321 123444555555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.06  E-value=3.6e-12  Score=116.07  Aligned_cols=135  Identities=16%  Similarity=0.216  Sum_probs=86.3

Q ss_pred             CCCCCCeEEcCCCCCccc----cCccCCCCCCCCEeeCCCCCCCC-----CCccccCCCCCcEEECCCCcccCC----Cc
Q 045304          232 RLTELYELDLGSNKFSRS----IPACFSNLASLRTLSLGSNELTS-----IPLTFWNLKDILYLNFSSNFLTGP----LP  298 (540)
Q Consensus       232 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~-----ip~~~~~l~~L~~L~L~~n~l~~~----~~  298 (540)
                      .-+.|+.+....|++...    +...|...+.|+.+.++.|.+..     +...+.++++|+.|+|.+|.++..    +.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            345666666666665421    23345556677777777776653     233566777777777777776532    33


Q ss_pred             cccccccCcceEEcccceeeecCcccc-----ccCCCCcEEeCcCccCccc----CCcccCCCCCCCEEECCCCcCc
Q 045304          299 LEIENLKVLVGIDFSVNNFSGVIPTTI-----GSLKGLQYLFVGYNRLQGS----IPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       299 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      ..+..+++|+.|++++|.+...-...|     ...++|+.|.+.+|.++..    +.......+.|..|+|++|.+.
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            455667778888888877764433222     2457888999999887632    2334455788899999999883

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.06  E-value=1.3e-10  Score=124.25  Aligned_cols=259  Identities=19%  Similarity=0.192  Sum_probs=163.4

Q ss_pred             CCCCCCEEeccCcc--cccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCC
Q 045304            8 NLRNLELLVLSHNK--LVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKL   85 (540)
Q Consensus         8 ~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L   85 (540)
                      .+++|++|-+..|.  +.....+.|..++.|++|||++|.--+.+|..+ +.+-+|++|+++++.+. .+|..+.++..|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            35589999999986  443333447789999999999987667899999 78999999999999998 899999999999


Q ss_pred             CEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCc
Q 045304           86 SLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLE  165 (540)
Q Consensus        86 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~  165 (540)
                      .+|++..+.....+|.....+++|++|.+..........   ....+.++.+|+.+..................+....+
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~---~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~  697 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL---LLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ  697 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchh---hHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence            999999888766667777789999999998765222111   34456667777777664443310001011111212233


Q ss_pred             EEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccC------CCCCCeeeeeCccccCcCCccccCCCCCCeE
Q 045304          166 YFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSK------LQKLQGLSLADNKLEGSIPNNICRLTELYEL  239 (540)
Q Consensus       166 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  239 (540)
                      .+.+..+... ..+..+..+.+|+.|.+.++.+..........      ++++..+...++... ..+.+.-..++|+.|
T Consensus       698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l  775 (889)
T KOG4658|consen  698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSL  775 (889)
T ss_pred             hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEE
Confidence            3443333332 34456778888999999888776332222111      223333333333222 122223345788888


Q ss_pred             EcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC
Q 045304          240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI  273 (540)
Q Consensus       240 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i  273 (540)
                      .+..+.....+.+....+..+..+.+..+.+.+.
T Consensus       776 ~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  776 SLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             EEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            8887765544444444444555444555544443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=8.7e-11  Score=104.78  Aligned_cols=130  Identities=25%  Similarity=0.362  Sum_probs=64.0

Q ss_pred             CCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEee
Q 045304          185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS  264 (540)
Q Consensus       185 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  264 (540)
                      .+.|+++|+++|.++ .+.++..-.|.++.|++++|++...  ..+..+++|+.|||++|.++. +...-..+-++++|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence            344555555555554 3344444455555555555555422  224555555555555555442 222223344555555


Q ss_pred             CCCCCCCCCCccccCCCCCcEEECCCCcccCCC-ccccccccCcceEEcccceeee
Q 045304          265 LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPL-PLEIENLKVLVGIDFSVNNFSG  319 (540)
Q Consensus       265 l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~  319 (540)
                      ++.|.+.++. .+..+.+|..|++++|++...- -..+++++-|+.+.|.+|.+.+
T Consensus       359 La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            5555544432 2334455555555555554211 1234555666666666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=3.7e-10  Score=96.64  Aligned_cols=125  Identities=26%  Similarity=0.316  Sum_probs=35.0

Q ss_pred             CCCCCCeEEcCCCCCccccCccCC-CCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceE
Q 045304          232 RLTELYELDLGSNKFSRSIPACFS-NLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGI  310 (540)
Q Consensus       232 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  310 (540)
                      +..++++|+|.+|.|+..  +.++ .+.+|+.|++++|.++.++                         .+..++.|+.|
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~-------------------------~l~~L~~L~~L   69 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE-------------------------GLPGLPRLKTL   69 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-------------------------T----TT--EE
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc-------------------------CccChhhhhhc
Confidence            334455556665555422  1232 3445555555555555433                         23334555555


Q ss_pred             EcccceeeecCccccccCCCCcEEeCcCccCcccC-CcccCCCCCCCEEECCCCcCccccCc----cccCCCCCCeEEc
Q 045304          311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI-PYSIGDLISLKSLNLSNNNLSGTIPV----SLEKLSYLEDLNL  384 (540)
Q Consensus       311 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~l~l  384 (540)
                      ++++|.++...+.....+++|++|++++|++...- -..+..+++|+.|++.+|+++.. +.    .+..+|+|+.||-
T Consensus        70 ~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   70 DLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             ccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            55555555322211124556666666666655321 13455667777777777776632 22    2456777777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=2e-09  Score=75.65  Aligned_cols=61  Identities=41%  Similarity=0.553  Sum_probs=41.0

Q ss_pred             CCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcc
Q 045304           10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNF   71 (540)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l   71 (540)
                      ++|++|++++|+++...+..|.++++|++|++++|.++ .+++..|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            45677777777777555566667777777777777766 56666666777777777776653

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=3.6e-10  Score=113.24  Aligned_cols=246  Identities=28%  Similarity=0.313  Sum_probs=128.0

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCC
Q 045304           57 RLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCK  136 (540)
Q Consensus        57 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~  136 (540)
                      .+..++.+++..|.+.. +-..+..+++|+.|++.+|.+..+ ...+..+++|++|++++|.++..       ..+..++
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i-------~~l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL-------EGLSTLT  140 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc-------cchhhcc
Confidence            34455555555555442 223345556666666666665532 11245566666666666666554       2344455


Q ss_pred             CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCC-hhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304          137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP-EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL  215 (540)
Q Consensus       137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  215 (540)
                      .|+.|++++|.+...   ..+..+ ..|+.+++++|.+...-+ . +..+.+++.+++.+|.+...  ..+..+..+..+
T Consensus       141 ~L~~L~l~~N~i~~~---~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~  213 (414)
T KOG0531|consen  141 LLKELNLSGNLISDI---SGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLL  213 (414)
T ss_pred             chhhheeccCcchhc---cCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHh
Confidence            566666666665543   222223 556666666666653332 2 45666677777777766522  223344445555


Q ss_pred             eeeCccccCcCCccccCCCC--CCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcc
Q 045304          216 SLADNKLEGSIPNNICRLTE--LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFL  293 (540)
Q Consensus       216 ~l~~n~~~~~~p~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l  293 (540)
                      ++..|.++..-+  +..+..  |+.+++++|.+.. .+..+..+..+..+++.+|.+..+.. +...+.+..+.+..|.+
T Consensus       214 ~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  214 SLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKL  289 (414)
T ss_pred             hcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc-ccccchHHHhccCcchh
Confidence            666666553221  222222  6677777776652 22445556677777777776665322 22234444555555554


Q ss_pred             cCC---Cccc-cccccCcceEEcccceeeecCc
Q 045304          294 TGP---LPLE-IENLKVLVGIDFSVNNFSGVIP  322 (540)
Q Consensus       294 ~~~---~~~~-~~~l~~L~~L~l~~n~l~~~~~  322 (540)
                      ...   .... ......++.+.+..|......+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  290 ALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cchhhhhccccccccccccccccccCccccccc
Confidence            421   1111 3445666777777776654443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.83  E-value=5e-10  Score=112.19  Aligned_cols=268  Identities=23%  Similarity=0.242  Sum_probs=186.3

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCC
Q 045304           58 LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKT  137 (540)
Q Consensus        58 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~  137 (540)
                      .+.++.++...+.....--. ...+..++.+.+..|.+.. +-..+..+++|+.|++.+|.+....      ..+..+++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~------~~l~~~~~  119 (414)
T KOG0531|consen   48 PSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE------NLLSSLVN  119 (414)
T ss_pred             cchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc------cchhhhhc
Confidence            34455555555543311111 1456777777888888774 3345788899999999999998752      22778999


Q ss_pred             CCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccC-ccccCCCCCCeee
Q 045304          138 LTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIP-ITLSKLQKLQGLS  216 (540)
Q Consensus       138 L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~  216 (540)
                      |++|++++|.+....+   +..+ ..|+.|++.+|.+...  ..+..++.|+.+++++|++...-+ . ...+..++.++
T Consensus       120 L~~L~ls~N~I~~i~~---l~~l-~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~  192 (414)
T KOG0531|consen  120 LQVLDLSFNKITKLEG---LSTL-TLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELD  192 (414)
T ss_pred             chheeccccccccccc---hhhc-cchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHh
Confidence            9999999999987743   4444 5699999999998643  345668899999999999985444 2 47788999999


Q ss_pred             eeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCC--CCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304          217 LADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLAS--LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       217 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~  294 (540)
                      +.+|.+...  ..+..+..+..+++..|.++..-+  +..+..  |+.+++++|.+..++..+..+..+..+++.+|++.
T Consensus       193 l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  193 LGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence            999988732  334455566666888888764432  222333  89999999999988777777888999999999886


Q ss_pred             CCCccccccccCcceEEcccceeeec---Ccc-ccccCCCCcEEeCcCccCcccCC
Q 045304          295 GPLPLEIENLKVLVGIDFSVNNFSGV---IPT-TIGSLKGLQYLFVGYNRLQGSIP  346 (540)
Q Consensus       295 ~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~l~~n~l~~~~~  346 (540)
                      ..-.  +.....+..+....|.+...   ... .....+.++.+.+..|.+....+
T Consensus       269 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  269 NLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            4322  33445555666666665522   111 14456778888888888775544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.9e-09  Score=74.13  Aligned_cols=59  Identities=32%  Similarity=0.497  Sum_probs=34.4

Q ss_pred             CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 045304           35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNS   94 (540)
Q Consensus        35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~   94 (540)
                      +|++|++++|.++ .+|...|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4556666666655 5555555556666666666666555555555555555555555554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=4.9e-10  Score=99.98  Aligned_cols=179  Identities=21%  Similarity=0.179  Sum_probs=108.4

Q ss_pred             CCCEEEccCCccccc-CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC
Q 045304           60 NLEVLRMRSNNFCGT-IPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL  138 (540)
Q Consensus        60 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L  138 (540)
                      .|+.|||+...++.. +-..++.|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+.--..  .. .--.+.+|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~--n~-~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE--NA-LQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch--hH-HHHHHHhhhhH
Confidence            588889988877632 233456788899999999888888878888888999999887643221  10 22346788888


Q ss_pred             CEEECcCCCCCccCCccccccccccCcEEEccCCcce---ecCChhccCCCCCCeeeccCCc-cccccCccccCCCCCCe
Q 045304          139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS---GGIPEEISNLTNLIIIYLGGNK-LNGSIPITLSKLQKLQG  214 (540)
Q Consensus       139 ~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~  214 (540)
                      ..|+|+.|.+........+....++|..|+++++.-.   ..+.--...+++|.+|||+++. ++...-..|..++.|++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            9999998887665432334455567777777765321   1112223456666666666553 22222233445566666


Q ss_pred             eeeeCccccCcCCc---cccCCCCCCeEEcCC
Q 045304          215 LSLADNKLEGSIPN---NICRLTELYELDLGS  243 (540)
Q Consensus       215 L~l~~n~~~~~~p~---~~~~l~~L~~L~l~~  243 (540)
                      |.++.|..  .+|.   .+...|+|.+|++.+
T Consensus       343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             eehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            66655542  2332   233445555555443

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=98.45  E-value=2.4e-07  Score=88.31  Aligned_cols=37  Identities=49%  Similarity=0.750  Sum_probs=29.9

Q ss_pred             CeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhh
Q 045304          498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVE  538 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E  538 (540)
                      .+||+|+||.||||.|. ++.||||++...   ..++|.+|
T Consensus       216 eli~~Grfg~V~KaqL~-~~~VAVKifp~~---~kqs~~~E  252 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQLD-NRLVAVKIFPEQ---EKQSFQNE  252 (534)
T ss_pred             HHhhcCccceeehhhcc-CceeEEEecCHH---HHHHHHhH
Confidence            56999999999999996 599999999543   34556665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=4.2e-09  Score=105.02  Aligned_cols=180  Identities=29%  Similarity=0.234  Sum_probs=120.6

Q ss_pred             CccccCCCCCCeeeeeCccccCcCCccccCC-CCCCeEEcCCCCCc----------cccCccCCCCCCCCEeeCCCCCCC
Q 045304          203 PITLSKLQKLQGLSLADNKLEGSIPNNICRL-TELYELDLGSNKFS----------RSIPACFSNLASLRTLSLGSNELT  271 (540)
Q Consensus       203 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l-~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~  271 (540)
                      |-.+..+..|+.|.+.++.+.. . ..+..+ ..|++|.- .|.+.          |.+..++. ...|.+.++++|.++
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence            5556778889999998887753 1 111111 22333321 12111          11111111 135778888899998


Q ss_pred             CCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304          272 SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD  351 (540)
Q Consensus       272 ~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  351 (540)
                      .+...+.-++.++.|+|++|+++..-  .+..++.|++|||++|.+.....-....|. |+.|.+++|.++..  ..+.+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence            88888888889999999999988543  678889999999999999844333444554 89999999988732  34678


Q ss_pred             CCCCCEEECCCCcCccccC-ccccCCCCCCeEEcccCccee
Q 045304          352 LISLKSLNLSNNNLSGTIP-VSLEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       352 l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~l~~  391 (540)
                      +.+|+.||+++|-+.+.-. ..+..+..|..|.+.+|++.+
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            8889999999998764321 123456678888899998754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.37  E-value=7.9e-09  Score=103.12  Aligned_cols=157  Identities=25%  Similarity=0.243  Sum_probs=76.8

Q ss_pred             CcccCCCCCCCEEeccCcccccCCCccccC-CC--------------------------------CCCEEEcccCcCccc
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFN-VS--------------------------------TLKVFEVSNNSLSGS   49 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~--------------------------------~L~~L~l~~n~l~~~   49 (540)
                      |-++..+++|++|.|.++++...  ..+.. -.                                .|.+.+.++|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            44577788999999999887521  11111 11                                2333344444443 2


Q ss_pred             cchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCcccc
Q 045304           50 LSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFL  129 (540)
Q Consensus        50 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  129 (540)
                      +.... .-++.|+.|+|++|+++..  +.+..+++|++|||++|.+.....-....+. |+.|.+++|.++..       
T Consensus       179 mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-------  247 (1096)
T KOG1859|consen  179 MDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-------  247 (1096)
T ss_pred             HHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-------
Confidence            22222 3345556666666655522  1455555666666666655522111122222 55556666555542       


Q ss_pred             ccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcc
Q 045304          130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV  174 (540)
Q Consensus       130 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~  174 (540)
                      ..+.++.+|+.||++.|-+.+.-....+..+ ..|..|.|.+|.+
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL  291 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence            2345555566666666555443222223333 3455555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=8.5e-08  Score=85.96  Aligned_cols=177  Identities=16%  Similarity=0.177  Sum_probs=90.8

Q ss_pred             CCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceec-CChhccC
Q 045304          106 LRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG-IPEEISN  184 (540)
Q Consensus       106 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~-~~~~l~~  184 (540)
                      .+.++++||.+|.++...+   +...+.++|.|+.|+|+.|++...|. ..-... .+|++|.|.+..+.-. ....+..
T Consensus        70 ~~~v~elDL~~N~iSdWse---I~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~-~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSE---IGAILEQLPALTTLNLSCNSLSSDIK-SLPLPL-KNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             hhhhhhhhcccchhccHHH---HHHHHhcCccceEeeccCCcCCCccc-cCcccc-cceEEEEEcCCCCChhhhhhhhhc
Confidence            4566666666666655322   33445566666666666666654433 111112 4566666666555322 2233556


Q ss_pred             CCCCCeeeccCCcccccc--Ccccc-CCCCCCeeeeeCc---------cccCcCCccccCCCCCCeEEcCCCCCccc-cC
Q 045304          185 LTNLIIIYLGGNKLNGSI--PITLS-KLQKLQGLSLADN---------KLEGSIPNNICRLTELYELDLGSNKFSRS-IP  251 (540)
Q Consensus       185 l~~L~~L~l~~n~l~~~~--~~~l~-~l~~L~~L~l~~n---------~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~  251 (540)
                      +|.++.|.++.|.+....  ..... ..+.+.++++..|         ++...       ++++..+.+..|.+... ..
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e~PlK~~s~e  217 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVCEGPLKTESSE  217 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeeecCcccchhhc
Confidence            667777777766332110  00011 1123344444333         33322       34556666666655422 22


Q ss_pred             ccCCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEEECCCCccc
Q 045304          252 ACFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       252 ~~~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L~L~~n~l~  294 (540)
                      ..+..++.+..|+|+.|++.+...  ++..+++|..|.++++.+.
T Consensus       218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            334556666677777777766332  4555666666666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.3e-08  Score=91.01  Aligned_cols=181  Identities=18%  Similarity=0.173  Sum_probs=118.0

Q ss_pred             CCCEEeccCcccc-cCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCc-cccc-CCccccCCCCCCE
Q 045304           11 NLELLVLSHNKLV-GVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN-FCGT-IPHFIFNASKLSL   87 (540)
Q Consensus        11 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~   87 (540)
                      .|++||||...++ ..+...+..|++|+.|.+.++.+.+.+...+ +.-.+|+.|+|+.|. ++.. ..--+.+|+.|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            5888999888776 2234456788899999999998887777777 677889999998774 3311 1123567888999


Q ss_pred             EEccCCcccccCCcc-cc-CCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCc
Q 045304           88 LELGDNSFSGFIPDT-FG-NLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLE  165 (540)
Q Consensus        88 L~L~~n~~~~~~~~~-~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~  165 (540)
                      |+|+.|.+....... +. --++|+.|+|+++.-.-....  +..-...+++|..|||++|.....-....+-++ +.|+
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh--~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~  341 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQ  341 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH--HHHHHHhCCceeeeccccccccCchHHHHHHhc-chhe
Confidence            999888765432211 11 125677788877532211111  222245688888888888764432221334445 6788


Q ss_pred             EEEccCCcceecCChh---ccCCCCCCeeeccCCc
Q 045304          166 YFYMPNCNVSGGIPEE---ISNLTNLIIIYLGGNK  197 (540)
Q Consensus       166 ~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~n~  197 (540)
                      +|.++.|..  .+|+.   +...|.|++|++.++-
T Consensus       342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            888888864  34543   4667889999887764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.27  E-value=3.3e-08  Score=78.19  Aligned_cols=60  Identities=23%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             cCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304          305 KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       305 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      +.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|.-+..+.++-.|+..+|.+.
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34455555555555 44555555555666666665555 33444444555555666555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=1.4e-07  Score=83.55  Aligned_cols=87  Identities=25%  Similarity=0.306  Sum_probs=42.2

Q ss_pred             CCCCCEEeccCcccccCCC----ccccCCCCCCEEEcccCcC---ccccchh------hhcCCCCCCEEEccCCcccccC
Q 045304            9 LRNLELLVLSHNKLVGVIP----TKVFNVSTLKVFEVSNNSL---SGSLSSI------AGVRLPNLEVLRMRSNNFCGTI   75 (540)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l---~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~   75 (540)
                      +..++.++||+|-+.....    ..+.+-.+|+..++++-..   ...+++.      +..+||+|+..+|++|.|....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4556666666666543322    2233445555555554311   1112211      1135566666666666655444


Q ss_pred             Ccc----ccCCCCCCEEEccCCcc
Q 045304           76 PHF----IFNASKLSLLELGDNSF   95 (540)
Q Consensus        76 ~~~----l~~l~~L~~L~L~~n~~   95 (540)
                      |..    ++.-+.|++|.+++|.+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCC
Confidence            433    23445566666665554

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=98.20  E-value=9.8e-07  Score=89.33  Aligned_cols=60  Identities=25%  Similarity=0.449  Sum_probs=48.0

Q ss_pred             ccccHHHHHHHhccCCc---------cCeeccCCCCcEEEEEec----CCCEEEEEEecccc-CCcchhhhhhc
Q 045304          480 RRFSYLELCRATDRFSE---------NNLIGRGGFGSVYKARIQ----DGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       480 ~~~~~~~l~~at~~f~~---------~~~ig~G~~G~Vykg~l~----~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ..++|+|--+|...|..         +.+||.|.||.||+|.|.    ....||||.|+.+. .+.+.+|+.|.
T Consensus       608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EA  681 (996)
T KOG0196|consen  608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEA  681 (996)
T ss_pred             CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhh
Confidence            45788888777776653         789999999999999982    24689999999876 34567899885

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=2.7e-07  Score=82.81  Aligned_cols=229  Identities=17%  Similarity=0.211  Sum_probs=141.3

Q ss_pred             CCCEEeccCcccccCC-Ccccc-CCCCCCEEEcccCcCcc--ccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC
Q 045304           11 NLELLVLSHNKLVGVI-PTKVF-NVSTLKVFEVSNNSLSG--SLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLS   86 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~-~~~~~-~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~   86 (540)
                      -++.|.+-++.+-..- -..|+ .++.++.|||.+|.+++  +|.. +..++|.|++|+|+.|.+...+...-....+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            3445555566553211 12233 47899999999999873  2222 347899999999999998865544335667999


Q ss_pred             EEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCc
Q 045304           87 LLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLE  165 (540)
Q Consensus        87 ~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~  165 (540)
                      +|.|.+..+.-. ....+..++.+++|.++.|.+.....+..-.+.  --+.++++....|....-.....++...+++.
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~  202 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN  202 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence            999988877533 234566788899999888855432111100000  11345555555554321111122333346788


Q ss_pred             EEEccCCcceecC-ChhccCCCCCCeeeccCCcccccc-CccccCCCCCCeeeeeCccccCcCCc------cccCCCCCC
Q 045304          166 YFYMPNCNVSGGI-PEEISNLTNLIIIYLGGNKLNGSI-PITLSKLQKLQGLSLADNKLEGSIPN------NICRLTELY  237 (540)
Q Consensus       166 ~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~------~~~~l~~L~  237 (540)
                      .+.+..|.+...- -+....++.+--|.|+.+++...- -+.+.+++.|..|.++++.+...+..      .++.+++++
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~  282 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ  282 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence            8888877664322 234555677778888888876422 13577889999999999887644322      356788888


Q ss_pred             eEEcC
Q 045304          238 ELDLG  242 (540)
Q Consensus       238 ~L~l~  242 (540)
                      .|+=+
T Consensus       283 vLNGs  287 (418)
T KOG2982|consen  283 VLNGS  287 (418)
T ss_pred             EecCc
Confidence            77543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.14  E-value=8.6e-08  Score=75.86  Aligned_cols=130  Identities=20%  Similarity=0.338  Sum_probs=73.1

Q ss_pred             CcEEEccCCcceecCChh---ccCCCCCCeeeccCCccccccCcccc-CCCCCCeeeeeCccccCcCCccccCCCCCCeE
Q 045304          164 LEYFYMPNCNVSGGIPEE---ISNLTNLIIIYLGGNKLNGSIPITLS-KLQKLQGLSLADNKLEGSIPNNICRLTELYEL  239 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  239 (540)
                      +..++|++|++- .+++.   +.....|+.++|++|.+. .+|..|. ..+.++.|++++|.++ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344455555442 22332   333455666677777776 3444443 4456777777777776 466667777777777


Q ss_pred             EcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCC
Q 045304          240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPL  297 (540)
Q Consensus       240 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~  297 (540)
                      +++.|.+. ..|..+..+.++-.|+..+|.+..+|.++..-...-...+.++.+.+.-
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~  162 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDET  162 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccC
Confidence            77777765 3455555566667777777766666655333233333333444444333

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=6.1e-07  Score=79.55  Aligned_cols=161  Identities=19%  Similarity=0.150  Sum_probs=72.6

Q ss_pred             ccCCCCCCeeeeeCccccCcCCcc----ccCCCCCCeEEcCCCCCccccCc-------------cCCCCCCCCEeeCCCC
Q 045304          206 LSKLQKLQGLSLADNKLEGSIPNN----ICRLTELYELDLGSNKFSRSIPA-------------CFSNLASLRTLSLGSN  268 (540)
Q Consensus       206 l~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n  268 (540)
                      +..||.|+.++|++|.|....|..    +++-+.|.+|.|++|.+...-..             -...-|.|+++....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            344555555555555554433332    33445555555555544211100             0122355666666666


Q ss_pred             CCCCCCcc-----ccCCCCCcEEECCCCcccCC-----CccccccccCcceEEcccceeeec----CccccccCCCCcEE
Q 045304          269 ELTSIPLT-----FWNLKDILYLNFSSNFLTGP-----LPLEIENLKVLVGIDFSVNNFSGV----IPTTIGSLKGLQYL  334 (540)
Q Consensus       269 ~l~~ip~~-----~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L  334 (540)
                      ++...|..     +..-..|+.+.+..|.|.-.     +-..+..+.+|+.|||..|-++-.    +...++.++.|++|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            66554331     11113555566655555411     001123345566666666655422    12233444555666


Q ss_pred             eCcCccCcccCCcc----c--CCCCCCCEEECCCCcCc
Q 045304          335 FVGYNRLQGSIPYS----I--GDLISLKSLNLSNNNLS  366 (540)
Q Consensus       335 ~l~~n~l~~~~~~~----~--~~l~~L~~L~l~~n~l~  366 (540)
                      .+..|-++..-..+    |  ...++|+.|...+|.+.
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            66665554221111    1  12345555555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=5.6e-06  Score=53.01  Aligned_cols=36  Identities=39%  Similarity=0.599  Sum_probs=20.1

Q ss_pred             CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCc
Q 045304           11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLS   47 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   47 (540)
                      +|++|++++|+++ .+|..+++|++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5566666666666 34445566666666666666555

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=3.2e-05  Score=74.85  Aligned_cols=57  Identities=18%  Similarity=0.297  Sum_probs=31.1

Q ss_pred             ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCC
Q 045304          182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSN  244 (540)
Q Consensus       182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  244 (540)
                      +..+.+++.|++++|.++ .+|. +  ..+|+.|.+.+|.-...+|..+.  ++|++|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            344566777777777655 3341 1  23567777765433234444332  45666666665

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.94  E-value=1.5e-05  Score=75.84  Aligned_cols=29  Identities=45%  Similarity=0.916  Sum_probs=26.2

Q ss_pred             cCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          497 NNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      .+.||+|+||.||||.+. |..||||.+..
T Consensus       216 ~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~s  244 (513)
T KOG2052|consen  216 QEIIGKGRFGEVWRGRWR-GEDVAVKIFSS  244 (513)
T ss_pred             EEEecCccccceeecccc-CCceEEEEecc
Confidence            567999999999999996 88999999954

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=5.3e-05  Score=73.38  Aligned_cols=17  Identities=12%  Similarity=0.163  Sum_probs=9.3

Q ss_pred             CCCCCCEEECcCccccC
Q 045304          105 NLRNLNKVTLYNNYLTS  121 (540)
Q Consensus       105 ~l~~L~~L~l~~n~~~~  121 (540)
                      .+.+++.|++++|.++.
T Consensus        50 ~~~~l~~L~Is~c~L~s   66 (426)
T PRK15386         50 EARASGRLYIKDCDIES   66 (426)
T ss_pred             HhcCCCEEEeCCCCCcc
Confidence            34556666666554444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=4.6e-06  Score=87.50  Aligned_cols=138  Identities=20%  Similarity=0.273  Sum_probs=70.6

Q ss_pred             CCCCEEEcccCcC-ccccchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304           34 STLKVFEVSNNSL-SGSLSSIAGVRLPNLEVLRMRSNNFCG-TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK  111 (540)
Q Consensus        34 ~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  111 (540)
                      .+|+.||+++... ....|..++..+|+|+.|.+++-.+.. .......++++|..||+++++++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4566666665432 223444555566666666666544431 1122234556666666666666533  44556666666


Q ss_pred             EECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccC--Cc---cccccccccCcEEEccCCcceecC
Q 045304          112 VTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGIL--PG---TSVGNLSHSLEYFYMPNCNVSGGI  178 (540)
Q Consensus       112 L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~---~~~~~l~~~L~~L~l~~~~~~~~~  178 (540)
                      |.+.+=.+....    ....+.++++|++||+|........  ..   ..-..+ ++|+.||.+++.+.+.+
T Consensus       200 L~mrnLe~e~~~----~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L-peLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  200 LSMRNLEFESYQ----DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL-PELRFLDCSGTDINEEI  266 (699)
T ss_pred             HhccCCCCCchh----hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC-ccccEEecCCcchhHHH
Confidence            666555444321    2234556666666666665433221  00   011112 56667776666555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=1.6e-05  Score=50.94  Aligned_cols=34  Identities=35%  Similarity=0.543  Sum_probs=13.5

Q ss_pred             CCEeeCCCCCCCCCCccccCCCCCcEEECCCCcc
Q 045304          260 LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFL  293 (540)
Q Consensus       260 L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l  293 (540)
                      |++|++++|+++.+|..+.++++|+.|++++|++
T Consensus         3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            4444444444444443344444444444444443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.80  E-value=4.4e-05  Score=65.09  Aligned_cols=84  Identities=23%  Similarity=0.320  Sum_probs=39.6

Q ss_pred             CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccC-CccccCCCCCCEEE
Q 045304           35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFI-PDTFGNLRNLNKVT  113 (540)
Q Consensus        35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~  113 (540)
                      +...+||++|.+. .++..  ..+++|.+|.|++|.++.+-|.--.-+++|+.|.|.+|++.... -+-+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~-~l~~l--p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLDNL--PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hcccC--CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4445555555543 22222  24555555555555555444433333445555555555543211 12234455555555


Q ss_pred             CcCccccC
Q 045304          114 LYNNYLTS  121 (540)
Q Consensus       114 l~~n~~~~  121 (540)
                      +-+|..+.
T Consensus       120 ll~Npv~~  127 (233)
T KOG1644|consen  120 LLGNPVEH  127 (233)
T ss_pred             ecCCchhc
Confidence            55554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.79  E-value=8.3e-05  Score=61.27  Aligned_cols=106  Identities=21%  Similarity=0.271  Sum_probs=58.1

Q ss_pred             ccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 045304            5 EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASK   84 (540)
Q Consensus         5 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~   84 (540)
                      +|.++++|+.+.+.. .+...-..+|.++++|+.+.+..+ +. .++...|..+++|+.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            477777888888774 455555567777777888887764 54 67777777777788888865 343344455666777


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCEEECcC
Q 045304           85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN  116 (540)
Q Consensus        85 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  116 (540)
                      |+.+++..+ +.......|.++ +|+.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            777777654 444445566666 777777654

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=97.77  E-value=1.2e-05  Score=79.39  Aligned_cols=50  Identities=30%  Similarity=0.533  Sum_probs=38.8

Q ss_pred             cccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      .++++|+..+       ..||+|+||+||||.+.+  .||||.|.....  +..++|..||
T Consensus       388 eIp~~ev~l~-------~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEV  439 (678)
T KOG0193|consen  388 EIPPEEVLLG-------ERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEV  439 (678)
T ss_pred             ccCHHHhhcc-------ceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHH
Confidence            3566776655       569999999999999973  699999975542  2457799997

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.75  E-value=5.6e-05  Score=64.49  Aligned_cols=82  Identities=26%  Similarity=0.348  Sum_probs=44.6

Q ss_pred             CCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEEEC
Q 045304          211 KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNF  288 (540)
Q Consensus       211 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L~L  288 (540)
                      +...++|++|.+...  +.|..++.|.+|.+.+|.|+...|.--.-+++|..|.+.+|++..+.+  .+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            455566666665421  235566666666666666665555443445566666666666555322  2334455555555


Q ss_pred             CCCccc
Q 045304          289 SSNFLT  294 (540)
Q Consensus       289 ~~n~l~  294 (540)
                      -+|.+.
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.68  E-value=6.8e-07  Score=84.11  Aligned_cols=279  Identities=16%  Similarity=0.107  Sum_probs=120.4

Q ss_pred             CCCEEeccCcccccCCC--ccccCCCCCCEEEcccCc-CccccchhhhcCCCCCCEEEccCC-cccccCCcc-ccCCCCC
Q 045304           11 NLELLVLSHNKLVGVIP--TKVFNVSTLKVFEVSNNS-LSGSLSSIAGVRLPNLEVLRMRSN-NFCGTIPHF-IFNASKL   85 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-l~~l~~L   85 (540)
                      .|+.|++.++.=.+.-+  ..-.++++++.|++.++. +++..--.+...+++|+.|++..| .++...-.. -..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46666666664332211  222456666666666654 221111223345667777777664 333222221 2356667


Q ss_pred             CEEEccCCcc-ccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccccc
Q 045304           86 SLLELGDNSF-SGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS  163 (540)
Q Consensus        86 ~~L~L~~n~~-~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~  163 (540)
                      ++++++.+.- ++. +...+.++..++.+.+.+|.-.+...   +...-..+..+..+++..+..........+......
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~---l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA---LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH---HHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            7777766542 221 11223345555555554432111100   111112233333444333322111111222222245


Q ss_pred             CcEEEccCCcceecCC-hh-ccCCCCCCeeeccCCcc-ccccCccc-cCCCCCCeeeeeCcccc--CcCCccccCCCCCC
Q 045304          164 LEYFYMPNCNVSGGIP-EE-ISNLTNLIIIYLGGNKL-NGSIPITL-SKLQKLQGLSLADNKLE--GSIPNNICRLTELY  237 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~-~~-l~~l~~L~~L~l~~n~l-~~~~~~~l-~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~  237 (540)
                      |+.|..+++...+..+ .. -.+..+|+.+-+.+++. +..--..+ .+++.|+.+++..+...  +.+...-.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            5555555554322111 11 13345566666655542 11111111 24456666666555321  11222233556666


Q ss_pred             eEEcCCCCCcccc-----CccCCCCCCCCEeeCCCCCCCC--CCccccCCCCCcEEECCCCc
Q 045304          238 ELDLGSNKFSRSI-----PACFSNLASLRTLSLGSNELTS--IPLTFWNLKDILYLNFSSNF  292 (540)
Q Consensus       238 ~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~--ip~~~~~l~~L~~L~L~~n~  292 (540)
                      .+.++.+......     ...-..+..|..+.++++....  .-+.+..+++|+.+++-+++
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            6666655322110     1111234456666666665443  33345556666666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.65  E-value=1.1e-05  Score=84.65  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=70.9

Q ss_pred             CCCCCEEEccCCccc-ccCCcccc-CCCCCCEEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCC
Q 045304           58 LPNLEVLRMRSNNFC-GTIPHFIF-NASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSN  134 (540)
Q Consensus        58 l~~L~~L~L~~n~l~-~~~~~~l~-~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~  134 (540)
                      -.+|+.|++++...- ..-|..++ -+++|++|.+.+-.+... ......++++|..||+++++++..       ..++.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-------~GIS~  193 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-------SGISR  193 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-------HHHhc
Confidence            367999999886432 22222333 468999999988766432 223456789999999999988864       45788


Q ss_pred             CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCc
Q 045304          135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN  173 (540)
Q Consensus       135 l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~  173 (540)
                      +++|+.|.+.+-.+........+.++ .+|+.||++...
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~  231 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNL-KKLRVLDISRDK  231 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcc-cCCCeeeccccc
Confidence            88888888877666543221234444 566666666544

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=97.59  E-value=4.9e-05  Score=77.22  Aligned_cols=47  Identities=23%  Similarity=0.423  Sum_probs=35.5

Q ss_pred             HhccCCccCeeccCCCCcEEEEEe-----------------cCCCEEEEEEeccccCCcchhhh
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARI-----------------QDGMEVAVKVFHLHCSGAFKSFD  536 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l-----------------~~g~~vAVK~l~~~~~~~~~~F~  536 (540)
                      ..++|...++||+|+||+||||.+                 .+++.||||++.....+..++|.
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl  206 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFL  206 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHH
Confidence            467899999999999999999975                 34578999999654333334444

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=97.54  E-value=0.00014  Score=74.74  Aligned_cols=44  Identities=32%  Similarity=0.511  Sum_probs=34.0

Q ss_pred             ccCeeccCCCCcEEEEEe-cCC----CEEEEEEecccc-CCcchhhhhhc
Q 045304          496 ENNLIGRGGFGSVYKARI-QDG----MEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l-~~g----~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ...+||+|.||+||||.+ +.|    .+||+|++.... .+...||..|+
T Consensus       700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeA  749 (1177)
T KOG1025|consen  700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEA  749 (1177)
T ss_pred             hhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHH
Confidence            457899999999999987 555    578999996544 34467788774

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=2.9e-05  Score=80.05  Aligned_cols=43  Identities=30%  Similarity=0.424  Sum_probs=35.2

Q ss_pred             CeeccCCCCcEEEEEecC------CCEEEEEEeccccCC-cchhhhhhcC
Q 045304          498 NLIGRGGFGSVYKARIQD------GMEVAVKVFHLHCSG-AFKSFDVECN  540 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~~~-~~~~F~~E~~  540 (540)
                      ..||+|.||+||+|+..+      .+.||||.|++.... ..++|.+|++
T Consensus       492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REae  541 (774)
T KOG1026|consen  492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAE  541 (774)
T ss_pred             hhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHH
Confidence            449999999999999733      478999999876644 6788999974

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.39  E-value=0.00057  Score=56.23  Aligned_cols=37  Identities=16%  Similarity=0.291  Sum_probs=11.8

Q ss_pred             ccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCC
Q 045304          230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGS  267 (540)
Q Consensus       230 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  267 (540)
                      |..+++|+.+.+.. .+...-...|..+++|+.+++..
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            33344444444432 23323333344444444444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.28  E-value=7.1e-06  Score=77.44  Aligned_cols=298  Identities=16%  Similarity=0.098  Sum_probs=173.3

Q ss_pred             CCCCEEEcccCcCccccch-hhhcCCCCCCEEEccCCc-ccccCCccc-cCCCCCCEEEccCCc-ccccCCc-cccCCCC
Q 045304           34 STLKVFEVSNNSLSGSLSS-IAGVRLPNLEVLRMRSNN-FCGTIPHFI-FNASKLSLLELGDNS-FSGFIPD-TFGNLRN  108 (540)
Q Consensus        34 ~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~-~~~~~~~-~~~~l~~  108 (540)
                      ..|+.|.+.++.-.+.-+- .+...+|+++.|++.+|. ++...-..+ ..+++|++|++..|. ++...-. --..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4688888888764322221 222578999999999885 332222223 367899999998853 4433322 2346899


Q ss_pred             CCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCC--hhccCCC
Q 045304          109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP--EEISNLT  186 (540)
Q Consensus       109 L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~--~~l~~l~  186 (540)
                      |++++++.+.......   +-....++..++.+.+.+|.-.+.-...........+..+++..|.......  ..-..+.
T Consensus       218 L~~lNlSwc~qi~~~g---v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNG---VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             HHHhhhccCchhhcCc---chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            9999999875433211   2334566777888877765322210001111111335566666664322211  1123467


Q ss_pred             CCCeeeccCCccccc-cCccc-cCCCCCCeeeeeCcc-ccCcCCccc-cCCCCCCeEEcCCCCCc--cccCccCCCCCCC
Q 045304          187 NLIIIYLGGNKLNGS-IPITL-SKLQKLQGLSLADNK-LEGSIPNNI-CRLTELYELDLGSNKFS--RSIPACFSNLASL  260 (540)
Q Consensus       187 ~L~~L~l~~n~l~~~-~~~~l-~~l~~L~~L~l~~n~-~~~~~p~~~-~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L  260 (540)
                      .|+.|+.+++...+. .-..+ .++.+|+.+-++.++ |+..--..+ .+.+.|+.+++..+...  +.+-..-.+++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            788998887654221 11222 467899999998885 332211122 35678999999887542  2233333568899


Q ss_pred             CEeeCCCCCC-CC-----CCccccCCCCCcEEECCCCccc-CCCccccccccCcceEEcccceeeec--CccccccCCCC
Q 045304          261 RTLSLGSNEL-TS-----IPLTFWNLKDILYLNFSSNFLT-GPLPLEIENLKVLVGIDFSVNNFSGV--IPTTIGSLKGL  331 (540)
Q Consensus       261 ~~L~l~~n~l-~~-----ip~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L  331 (540)
                      +.+.++.|.. ++     +...-..+..|..+.|+++... ...-..+..+++|+.+++-+++-...  +...-..++++
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i  454 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI  454 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence            9999998743 22     1233455678889999998754 23334566778899988877643211  22222345555


Q ss_pred             cEE
Q 045304          332 QYL  334 (540)
Q Consensus       332 ~~L  334 (540)
                      +..
T Consensus       455 ~v~  457 (483)
T KOG4341|consen  455 KVH  457 (483)
T ss_pred             eeh
Confidence            544

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.0003  Score=65.63  Aligned_cols=36  Identities=36%  Similarity=0.600  Sum_probs=30.0

Q ss_pred             CCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC
Q 045304          494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS  529 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~  529 (540)
                      +...+++|+|+||.||+|++. .++.|||||.+.+..
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r   62 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR   62 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC
Confidence            445689999999999999994 468999999976553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.00013  Score=65.08  Aligned_cols=93  Identities=24%  Similarity=0.393  Sum_probs=48.8

Q ss_pred             CCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCC--cccccCCccccCCCCCCEEEccCCccccc-CCcc
Q 045304           26 IPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSN--NFCGTIPHFIFNASKLSLLELGDNSFSGF-IPDT  102 (540)
Q Consensus        26 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~  102 (540)
                      +....-.+..|+.|.+.+..++ ++....  .+++|+.|.++.|  ++++.++.....+++|++++++.|++... --..
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~~~~P--~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TLTNFP--KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhcccee-ecccCC--CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence            3333344455555555555554 333222  4666777777766  44444444444556666666666665421 0112


Q ss_pred             ccCCCCCCEEECcCccccC
Q 045304          103 FGNLRNLNKVTLYNNYLTS  121 (540)
Q Consensus       103 ~~~l~~L~~L~l~~n~~~~  121 (540)
                      +..+.+|..|++.+|..+.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcchhhhhcccCCccc
Confidence            3445556666666655444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.15  E-value=0.00021  Score=63.76  Aligned_cols=106  Identities=26%  Similarity=0.310  Sum_probs=73.8

Q ss_pred             CCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccC--cCccccchhhhcCCCCCCEEEccCCccccc-CCccccCCC
Q 045304            7 GNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNN--SLSGSLSSIAGVRLPNLEVLRMRSNNFCGT-IPHFIFNAS   83 (540)
Q Consensus         7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~   83 (540)
                      -.+.+|+.|++.+..++..  ..|-.+++|+.|+++.|  ...+.++..+ ..+|+|++|+++.|++.-. --..+..+.
T Consensus        40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhc
Confidence            3456778888887777633  35667899999999999  6666677666 5679999999999987721 112245677


Q ss_pred             CCCEEEccCCcccccCC---ccccCCCCCCEEECc
Q 045304           84 KLSLLELGDNSFSGFIP---DTFGNLRNLNKVTLY  115 (540)
Q Consensus        84 ~L~~L~L~~n~~~~~~~---~~~~~l~~L~~L~l~  115 (540)
                      +|..|++.+|..+..--   ..|.-+++|++|+-.
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            88899999887654211   234556667666543

>PRK09188 serine/threonine protein kinase; Provisional

Probab=96.99  E-value=0.00053  Score=66.71  Aligned_cols=51  Identities=22%  Similarity=0.167  Sum_probs=36.8

Q ss_pred             HHhccCCccCeeccCCCCcEEEEEec--CCCEEEEEEeccccC-----Ccchhhhhhc
Q 045304          489 RATDRFSENNLIGRGGFGSVYKARIQ--DGMEVAVKVFHLHCS-----GAFKSFDVEC  539 (540)
Q Consensus       489 ~at~~f~~~~~ig~G~~G~Vykg~l~--~g~~vAVK~l~~~~~-----~~~~~F~~E~  539 (540)
                      ..-++|.....||+|+||+||+|...  +|+.||||++.....     ...+.|.+|+
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~   72 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREI   72 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHH
Confidence            34456778899999999999999874  578899999753211     1234477775

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=96.93  E-value=0.00062  Score=66.19  Aligned_cols=41  Identities=37%  Similarity=0.609  Sum_probs=32.2

Q ss_pred             CeeccCCCCcEEEEEecCCCE-EEEEEeccccCCc--chhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQDGME-VAVKVFHLHCSGA--FKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~~g~~-vAVK~l~~~~~~~--~~~F~~E~  539 (540)
                      +.||+|+||+||+|.+. |+. ||||++.......  .++|..|+
T Consensus        47 ~~iG~G~~g~V~~~~~~-g~~~vavK~~~~~~~~~~~~~~f~~E~   90 (362)
T KOG0192|consen   47 EVLGSGSFGTVYKGKWR-GTDVVAVKIISDPDFDDESRKAFRREA   90 (362)
T ss_pred             hhcccCCceeEEEEEeC-CceeEEEEEecchhcChHHHHHHHHHH
Confidence            44999999999999996 666 9999997654322  45788886

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=3.6e-05  Score=68.85  Aligned_cols=99  Identities=23%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             CCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEE
Q 045304          209 LQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYL  286 (540)
Q Consensus       209 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L  286 (540)
                      +.+.+.|++.+|.+++.  .....++.|+.|.|+-|+|+..-|  |..|++|+.|.|..|.|.++.+  -+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44556666666666532  223456677777777777664332  5666777777777777766544  34567777777


Q ss_pred             ECCCCcccCCCccc-----cccccCcceEE
Q 045304          287 NFSSNFLTGPLPLE-----IENLKVLVGID  311 (540)
Q Consensus       287 ~L~~n~l~~~~~~~-----~~~l~~L~~L~  311 (540)
                      .|..|.-.|.-+..     +..+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77777766554432     34455555543

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.73  E-value=0.0011  Score=58.28  Aligned_cols=50  Identities=30%  Similarity=0.402  Sum_probs=38.2

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhcC
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVECN  540 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~~  540 (540)
                      .++|.-+..+|+|.||.||.|... ++-.||+|++....   .+-.+++.+|||
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiE   74 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIE   74 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeE
Confidence            456888899999999999999985 46789999995433   223456777775

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=96.56  E-value=0.0031  Score=65.80  Aligned_cols=37  Identities=30%  Similarity=0.450  Sum_probs=32.1

Q ss_pred             HhccCCccCeeccCCCCcEEEEEecC-----CCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQD-----GMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~~-----g~~vAVK~l~~  526 (540)
                      ..++|...+.||+|+||.||+|+..+     |..||||++..
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~  171 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE  171 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence            56788889999999999999999854     68999999853

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=6.4e-05  Score=67.30  Aligned_cols=106  Identities=20%  Similarity=0.208  Sum_probs=58.2

Q ss_pred             CCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccC-CccccCCCCCC
Q 045304           32 NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFI-PDTFGNLRNLN  110 (540)
Q Consensus        32 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~  110 (540)
                      ++.+.+.|++-++.++ .|.  +..+|+.|++|.|+-|+++..-  .+..|++|++|+|..|.|.... ..-+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            3455666666666665 232  2246777777777777776332  3566777777777777665321 12345667777


Q ss_pred             EEECcCccccCCCCCccccccCCCCCCCCEEE
Q 045304          111 KVTLYNNYLTSSTSDLNFLSSLSNCKTLTYID  142 (540)
Q Consensus       111 ~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~  142 (540)
                      .|.|..|.-.+....---...+..+++|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77776665443211100112244455566554

>PHA02988 hypothetical protein; Provisional

Probab=96.45  E-value=0.0032  Score=59.81  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             cccccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCc---chhhhhhc
Q 045304          479 WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGA---FKSFDVEC  539 (540)
Q Consensus       479 ~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~---~~~F~~E~  539 (540)
                      .+.++.+++.     +.....||+|++|.||+|.+ +|+.||||++.......   .+.|.+|+
T Consensus        12 ~~~i~~~~i~-----~~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~   69 (283)
T PHA02988         12 IKCIESDDID-----KYTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEI   69 (283)
T ss_pred             ceecCHHHcC-----CCCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHH
Confidence            3455666663     33447899999999999999 68999999996543222   24566775

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=96.39  E-value=0.0021  Score=63.89  Aligned_cols=47  Identities=30%  Similarity=0.393  Sum_probs=33.0

Q ss_pred             cCCccCeeccCCCCcEEEEEe------cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||.||+|+.      ..+..||||++.... ....+.|..|+
T Consensus        36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei   89 (375)
T cd05104          36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSEL   89 (375)
T ss_pred             HeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHH
Confidence            355568899999999999974      235689999996433 22234566665

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=96.35  E-value=0.0016  Score=58.33  Aligned_cols=52  Identities=29%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             cccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      .|+-++|+..       ..||.|.||+|+|-.. +.|+..||||++.... ...++|..|.
T Consensus        60 ~F~~~~Lqdl-------g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~  113 (361)
T KOG1006|consen   60 TFTSDNLQDL-------GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEH  113 (361)
T ss_pred             ccccchHHHH-------HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHH
Confidence            4555556554       3499999999999887 6799999999976553 3345566654

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=96.24  E-value=0.003  Score=61.99  Aligned_cols=43  Identities=30%  Similarity=0.510  Sum_probs=33.0

Q ss_pred             cCeeccCCCCcEEEEEe-cCCCEEEEEEecccc--CCcchhhhhhc
Q 045304          497 NNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      ++++|+|.||+||-|+- ..|+.||||++....  .++..+..+||
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EV  614 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEV  614 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHH
Confidence            46899999999999987 469999999996544  23344566665

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=96.23  E-value=0.0053  Score=54.78  Aligned_cols=33  Identities=42%  Similarity=0.390  Sum_probs=28.8

Q ss_pred             CCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          494 FSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      +.-.+.||+|+||.||+|..++|+.||||+...
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~   49 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRL   49 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEec
Confidence            444678999999999999998899999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PTZ00284 protein kinase; Provisional

Probab=96.22  E-value=0.0021  Score=65.94  Aligned_cols=42  Identities=31%  Similarity=0.380  Sum_probs=34.5

Q ss_pred             HHHHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          485 LELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       485 ~~l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      +++...+++|...+.||+|+||+||+|+.. .++.||||++..
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~  164 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRN  164 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEec
Confidence            344556778888899999999999999874 578999999954

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.17  E-value=0.0046  Score=59.37  Aligned_cols=35  Identities=43%  Similarity=0.674  Sum_probs=28.3

Q ss_pred             CCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304          494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC  528 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~  528 (540)
                      |+....||+|.||.||||.-. .++.||+|.+..+.
T Consensus        15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~   50 (467)
T KOG0201|consen   15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEE   50 (467)
T ss_pred             cccchhccccccceeeeeeeccccceEEEEEechhh
Confidence            445577999999999999873 47899999996544

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=96.08  E-value=0.0049  Score=62.69  Aligned_cols=51  Identities=25%  Similarity=0.348  Sum_probs=38.7

Q ss_pred             ccHHHHHHHhccCCccCeeccCCCCcEEEEEe--cCCC--EEEEEEeccccCC-cchhhhhhc
Q 045304          482 FSYLELCRATDRFSENNLIGRGGFGSVYKARI--QDGM--EVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l--~~g~--~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +..++|+..       ++||+|.||+|++|.+  ++|.  .||||.|..+... ...+|..|+
T Consensus       107 Ipee~i~l~-------e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEa  162 (1039)
T KOG0199|consen  107 IPEEQIKLY-------ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREA  162 (1039)
T ss_pred             ccHHHHHHH-------HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHH
Confidence            455666655       5699999999999998  4564  5899999876643 456798886

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=96.07  E-value=0.0031  Score=62.75  Aligned_cols=42  Identities=33%  Similarity=0.544  Sum_probs=31.5

Q ss_pred             CeeccCCCCcEEEEEecC--C---CEEEEEEecccc---CCcchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQD--G---MEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~~--g---~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      ..||+|.||.||+|++..  +   ..||||......   ....++|+.|.
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EA  212 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEA  212 (474)
T ss_pred             ceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHH
Confidence            679999999999999843  2   238999997422   33457788885

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=96.04  E-value=0.0047  Score=61.77  Aligned_cols=47  Identities=23%  Similarity=0.339  Sum_probs=32.6

Q ss_pred             cCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      .|.-.++||+|+||.||+|+..      .+..||||++..... ...+.|..|+
T Consensus        38 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei   91 (400)
T cd05105          38 GLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSEL   91 (400)
T ss_pred             ceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHH
Confidence            3444578999999999999862      134699999965432 2234577775

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=96.01  E-value=0.0045  Score=60.73  Aligned_cols=45  Identities=27%  Similarity=0.386  Sum_probs=38.2

Q ss_pred             ccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          482 FSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ....++..++++|.....||+|+||.||+|.. .+|+.||||++..
T Consensus         7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~   52 (345)
T cd07877           7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR   52 (345)
T ss_pred             hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecC
Confidence            34466777889999999999999999999985 5689999999964

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=95.97  E-value=0.0044  Score=61.06  Aligned_cols=43  Identities=30%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             cCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC-cchhhhhhc
Q 045304          497 NNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      .+.||+|+||.||+|+.. +|+.||||++...... ..+.|..|+
T Consensus        79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~  123 (353)
T PLN00034         79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREI  123 (353)
T ss_pred             hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHH
Confidence            367999999999999874 6899999999643322 234566665

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=95.94  E-value=0.0036  Score=59.75  Aligned_cols=45  Identities=33%  Similarity=0.517  Sum_probs=39.0

Q ss_pred             ccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          482 FSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ++++++..++++|.-...||+|+||.||+|.. .+|+.+|||++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~   57 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDP   57 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecc
Confidence            55677778899999999999999999999988 4688999999854

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=95.93  E-value=0.0046  Score=61.37  Aligned_cols=47  Identities=23%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             cCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccCC-cchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||.||+|+.      .++..||||++...... ....|..|+
T Consensus        39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   92 (374)
T cd05106          39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSEL   92 (374)
T ss_pred             HceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHH
Confidence            455668899999999999874      23468999999654322 233466665

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.92  E-value=0.00072  Score=69.76  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=16.6

Q ss_pred             CCCCCEEECcCCC-CCccCCccccccccccCcEEEccCCcc
Q 045304          135 CKTLTYIDLSDNP-LDGILPGTSVGNLSHSLEYFYMPNCNV  174 (540)
Q Consensus       135 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~~L~~L~l~~~~~  174 (540)
                      +++|+.|.+.++. ++..-- ..+....+.|++|+++.|..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCcc
Confidence            5555555554444 222111 12222224466666655543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.90  E-value=0.0033  Score=33.30  Aligned_cols=20  Identities=50%  Similarity=0.590  Sum_probs=10.8

Q ss_pred             CCCEEeccCcccccCCCcccc
Q 045304           11 NLELLVLSHNKLVGVIPTKVF   31 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~   31 (540)
                      +|++|+|++|+++ .+|..|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3556666666555 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.90  E-value=0.00049  Score=70.97  Aligned_cols=113  Identities=24%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             CCCCCEEEcccCcCccccc-hhhhcCCCCCCEEEccCC-cccccCC----ccccCCCCCCEEEccCCc-ccccCCcccc-
Q 045304           33 VSTLKVFEVSNNSLSGSLS-SIAGVRLPNLEVLRMRSN-NFCGTIP----HFIFNASKLSLLELGDNS-FSGFIPDTFG-  104 (540)
Q Consensus        33 l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~l~~L~~L~L~~n~-~~~~~~~~~~-  104 (540)
                      ++.|+.|.+.++.-..... ..+...+++|+.|+++++ ......+    .....+.+|+.|+++++. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5666666666653221211 122246677777777652 2111111    223345667777777666 4433222222 


Q ss_pred             CCCCCCEEECcCcc-ccCCCCCccccccCCCCCCCCEEECcCCCCC
Q 045304          105 NLRNLNKVTLYNNY-LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLD  149 (540)
Q Consensus       105 ~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  149 (540)
                      .+++|++|.+.++. ++...    +......+++|+.|+++++...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~g----l~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEG----LVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhH----HHHHHHhcCcccEEeeecCccc
Confidence            26677777766554 33221    3334455677777777766543

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=95.88  E-value=0.0051  Score=66.50  Aligned_cols=43  Identities=33%  Similarity=0.583  Sum_probs=33.3

Q ss_pred             cCeeccCCCCcEEEEEecC--C----CEEEEEEecccc-CCcchhhhhhc
Q 045304          497 NNLIGRGGFGSVYKARIQD--G----MEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l~~--g----~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ...||+|.||.||+|++.+  |    ..||||.+.... .+...+|..|.
T Consensus       697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea  746 (1025)
T KOG1095|consen  697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEA  746 (1025)
T ss_pred             eeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHH
Confidence            4679999999999999954  3    349999997665 34456798874

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=95.86  E-value=0.0053  Score=61.39  Aligned_cols=46  Identities=26%  Similarity=0.379  Sum_probs=32.4

Q ss_pred             CCccCeeccCCCCcEEEEEecC------CCEEEEEEeccccCC-cchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +.-...||+|+||.||+|+..+      +..||||++...... ..+.|..|+
T Consensus        39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~   91 (401)
T cd05107          39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSEL   91 (401)
T ss_pred             eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHH
Confidence            3444779999999999999742      357999999754322 234566665

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=95.83  E-value=0.0045  Score=58.82  Aligned_cols=58  Identities=21%  Similarity=0.363  Sum_probs=42.9

Q ss_pred             cccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .+.++.+..++++|.-...||+|+||.||+|+. .+|+.+|||++..... ...++.+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~e~   65 (286)
T cd06638           7 TIIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD-IDEEIEAEY   65 (286)
T ss_pred             eEEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc-hHHHHHHHH
Confidence            355667777888898889999999999999987 4578999999854221 223455553

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=95.78  E-value=0.0051  Score=60.13  Aligned_cols=35  Identities=40%  Similarity=0.683  Sum_probs=28.1

Q ss_pred             CCccCeeccCCCCcEEEEE-ecCCCEEEEEEecccc
Q 045304          494 FSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHC  528 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~  528 (540)
                      |.....||+|.||.||||. +..|..||.||+.-+.
T Consensus       119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~  154 (560)
T KOG0600|consen  119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDN  154 (560)
T ss_pred             HHHHHHhcCcchhheeEeeecccCcEEEEEEeeccc
Confidence            3334569999999999996 5779999999996544

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=95.77  E-value=0.0049  Score=63.56  Aligned_cols=50  Identities=24%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      ..+.|.-.+.||+|+||+||+|+. .+|+.||||++.....  +....+.+|+
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei   82 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEV   82 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHH
Confidence            345666678899999999999975 5789999999964322  2223455554

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=95.71  E-value=0.0038  Score=57.81  Aligned_cols=35  Identities=31%  Similarity=0.536  Sum_probs=28.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ++|-.-|.|++|.||.||||+= .++..||.||++-
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~km  111 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKM  111 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeeccc
Confidence            3445558899999999999986 4578999999964

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=95.68  E-value=0.0096  Score=60.00  Aligned_cols=34  Identities=38%  Similarity=0.545  Sum_probs=29.7

Q ss_pred             cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH  527 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~  527 (540)
                      .|++ +-||+|++|.||+|++.+|+.||||+...+
T Consensus       119 ~fd~-~plasaSigQVh~A~l~~G~~VaVKv~rp~  152 (437)
T TIGR01982       119 EFEE-KPLAAASIAQVHRARLVDGKEVAVKVLRPG  152 (437)
T ss_pred             hCCC-cceeeeehhheEEEEecCCCEEEEEeeCCC
Confidence            4553 679999999999999999999999998655

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=95.68  E-value=0.0028  Score=50.97  Aligned_cols=36  Identities=36%  Similarity=0.497  Sum_probs=30.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC  528 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~  528 (540)
                      ..|++ +-||+|+.|.||+|++.+|+.||||+..++-
T Consensus        12 ~~fd~-~PlasASiaQVh~a~l~~g~~VaVKV~rP~i   47 (119)
T PF03109_consen   12 DEFDP-EPLASASIAQVHRARLKDGEEVAVKVQRPGI   47 (119)
T ss_pred             HHCCc-chhhheehhhheeeeecccchhhhhhcchHH
Confidence            34553 6799999999999999999999999987653

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=95.64  E-value=0.007  Score=60.29  Aligned_cols=44  Identities=30%  Similarity=0.452  Sum_probs=37.5

Q ss_pred             cCeeccCCCCcEEEEEecCCCEEEEEEeccccCC-cchhhhhhcC
Q 045304          497 NNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSG-AFKSFDVECN  540 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~-~~~~F~~E~~  540 (540)
                      .+.||+|-||.|-..+...+..||||.++.+... .+++|..||+
T Consensus       543 ~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIk  587 (807)
T KOG1094|consen  543 KEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIK  587 (807)
T ss_pred             hhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHH
Confidence            4569999999999999987899999999877643 4689999984

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=95.57  E-value=0.011  Score=56.52  Aligned_cols=48  Identities=29%  Similarity=0.380  Sum_probs=35.3

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ..|...+.||+|+||.||+|+- .+|+.||||.+........+.|..|+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~   67 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEI   67 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHH
Confidence            3456668899999999999985 57899999999654433334455554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=95.57  E-value=0.0079  Score=59.19  Aligned_cols=41  Identities=27%  Similarity=0.385  Sum_probs=33.9

Q ss_pred             CeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +.||+|-||.||.|.+.+...||||.+..+... .++|.+|+
T Consensus       212 ~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~-~~~f~~Ea  252 (468)
T KOG0197|consen  212 RELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMS-PEAFLREA  252 (468)
T ss_pred             HHhcCCccceEEEEEEcCCCcccceEEeccccC-hhHHHHHH
Confidence            459999999999999976669999999877543 46788886

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=95.37  E-value=0.01  Score=57.73  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|... +|+.||||++....   ....+.|.+|+
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~   69 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEK   69 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHH
Confidence            34556688999999999999985 58899999996432   12234455554

>PTZ00036 glycogen synthase kinase; Provisional

Probab=95.36  E-value=0.013  Score=59.43  Aligned_cols=36  Identities=33%  Similarity=0.552  Sum_probs=30.0

Q ss_pred             hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      +..|...++||+|+||.||+|+. ..|+.||||++..
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~  101 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQ  101 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEec
Confidence            34577778999999999999987 4578999999854

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=95.32  E-value=0.016  Score=56.84  Aligned_cols=37  Identities=30%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ..+.|.....||+|+||.||+|.- .+|..||||++..
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   50 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSR   50 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCc
Confidence            345566678899999999999986 4678999999964

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=95.30  E-value=0.013  Score=55.52  Aligned_cols=45  Identities=29%  Similarity=0.516  Sum_probs=37.3

Q ss_pred             ccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          482 FSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      .++.++..+.+.|.-...||+|+||.||+|.. .+|+.||+|+...
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~   51 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDV   51 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEec
Confidence            45566667778888888999999999999998 4578999999854

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=95.23  E-value=0.014  Score=55.42  Aligned_cols=50  Identities=30%  Similarity=0.368  Sum_probs=38.1

Q ss_pred             HHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304          489 RATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       489 ~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .++++|...+.||+|+||.||+|... ++..||+|++..... ..++|..|+
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~   66 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEI   66 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHH
Confidence            45566777788999999999999996 688999999965433 344566664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>smart00090 RIO RIO-like kinase

Probab=95.20  E-value=0.021  Score=52.45  Aligned_cols=34  Identities=29%  Similarity=0.312  Sum_probs=28.5

Q ss_pred             CCccCeeccCCCCcEEEEE--ecCCCEEEEEEeccc
Q 045304          494 FSENNLIGRGGFGSVYKAR--IQDGMEVAVKVFHLH  527 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~--l~~g~~vAVK~l~~~  527 (540)
                      |.-...||+|+||.||+|+  ..+|+.||||++...
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~   65 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTG   65 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcC
Confidence            3345679999999999998  678999999998643

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.15  E-value=0.0091  Score=59.61  Aligned_cols=46  Identities=33%  Similarity=0.472  Sum_probs=32.0

Q ss_pred             CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCc---chhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGA---FKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~---~~~F~~E~  539 (540)
                      |++-..||.|+||.||-|.= .+.++||||++.-..++.   +++...||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEV   77 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEV   77 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHH
Confidence            44445599999999999864 456899999997544433   34444444

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=95.12  E-value=0.016  Score=55.23  Aligned_cols=42  Identities=31%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             CeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ..||+|+||.||+|.. .+|..||||++..........|..|+
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~   68 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEV   68 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHH
Confidence            4599999999999988 56899999998654433344566664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=95.08  E-value=0.0036  Score=56.60  Aligned_cols=42  Identities=38%  Similarity=0.533  Sum_probs=31.0

Q ss_pred             CeeccCCCCcEEEEE-ecCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          498 NLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      ..||+|.||.|||+. +.+|..||.|+++-+...  ..+.-.+||
T Consensus        25 ~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei   69 (375)
T KOG0591|consen   25 KKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEI   69 (375)
T ss_pred             HHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHH
Confidence            569999999999995 689999999999744322  233445554

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=95.06  E-value=0.0056  Score=62.40  Aligned_cols=42  Identities=33%  Similarity=0.541  Sum_probs=31.4

Q ss_pred             CeeccCCCCcEEEEE-ecCCCEEEEEEecccc-CCcchhhhhhc
Q 045304          498 NLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ..+|+||||.||+|+ =..|..||||...... ......+..|+
T Consensus        19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~Ei   62 (732)
T KOG4250|consen   19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREI   62 (732)
T ss_pred             hhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHH
Confidence            569999999999999 4679999999997543 33334455554

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=95.04  E-value=0.018  Score=55.18  Aligned_cols=42  Identities=33%  Similarity=0.322  Sum_probs=31.8

Q ss_pred             CeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ..||+|+||.||+|.. .+|+.||||++........+.|.+|+
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~   69 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEV   69 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHH
Confidence            4699999999999987 46899999999654433345566664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=95.01  E-value=0.019  Score=54.88  Aligned_cols=47  Identities=28%  Similarity=0.371  Sum_probs=35.0

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +|.....||+|+||.||+|+- .+|+.||||++........+.|..|+
T Consensus        20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~   67 (296)
T cd06655          20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEI   67 (296)
T ss_pred             eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHH
Confidence            355667899999999999985 57899999999654433344566654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=94.99  E-value=0.021  Score=54.62  Aligned_cols=35  Identities=34%  Similarity=0.505  Sum_probs=29.2

Q ss_pred             cCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLH  527 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~  527 (540)
                      +|.-.+.||+|+||.||+|+..+ |+.||||++...
T Consensus        16 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~   51 (296)
T cd06618          16 DLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRT   51 (296)
T ss_pred             hheeeeEeeccCCeEEEEEEECCCCeEEEEEEEecc
Confidence            34455789999999999999965 899999999643

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=94.99  E-value=0.01  Score=58.81  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=30.9

Q ss_pred             HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      ..++|...+.||+|+||.||+|+.. +|+.||||++..
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~   78 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSK   78 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH
Confidence            3456777789999999999999874 588999999953

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=94.98  E-value=0.018  Score=55.34  Aligned_cols=47  Identities=30%  Similarity=0.397  Sum_probs=34.4

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC---Ccchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS---GAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~---~~~~~F~~E~  539 (540)
                      .|...+.||+|+||.||+|+.. +|+.||+|++.....   +..++|.+|+
T Consensus        16 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei   66 (307)
T cd06607          16 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEV   66 (307)
T ss_pred             hhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHH
Confidence            3566688999999999999874 689999999854322   1234566665

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=94.94  E-value=0.02  Score=57.41  Aligned_cols=33  Identities=39%  Similarity=0.702  Sum_probs=28.9

Q ss_pred             CCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      +.-.++||+|||..||+++- ..|..||||++..
T Consensus        20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk   53 (592)
T KOG0575|consen   20 YKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPK   53 (592)
T ss_pred             eeeeeeeccCcceEEEEEEEcCCCcEEEEEEeeh
Confidence            44558899999999999987 8899999999965

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=94.92  E-value=0.023  Score=54.27  Aligned_cols=47  Identities=30%  Similarity=0.385  Sum_probs=34.0

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||.||+|.- .+|..||+|++........+.|..|+
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~   67 (293)
T cd06647          20 KYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEI   67 (293)
T ss_pred             hceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHH
Confidence            455557899999999999985 46789999998644333334566554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.89  E-value=0.013  Score=31.04  Aligned_cols=11  Identities=27%  Similarity=0.588  Sum_probs=4.4

Q ss_pred             CEEEcccCcCc
Q 045304           37 KVFEVSNNSLS   47 (540)
Q Consensus        37 ~~L~l~~n~l~   47 (540)
                      ++|++++|.++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=94.86  E-value=0.025  Score=54.07  Aligned_cols=47  Identities=28%  Similarity=0.386  Sum_probs=34.2

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .|.....||+|+||.||+|+- .+|+.||||++........+.|..|+
T Consensus        21 ~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~   68 (296)
T cd06654          21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEI   68 (296)
T ss_pred             ceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHH
Confidence            344557799999999999985 56889999999654433344565554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=94.84  E-value=0.0034  Score=57.06  Aligned_cols=44  Identities=27%  Similarity=0.382  Sum_probs=31.9

Q ss_pred             CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      |+--..+|+|+||.||||.. ..|++||||+.-.+.  +.+|...||
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s--DLQEIIKEI   79 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT--DLQEIIKEI   79 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc--hHHHHHHHH
Confidence            33345699999999999987 569999999985433  244555444

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=94.81  E-value=0.016  Score=57.38  Aligned_cols=38  Identities=26%  Similarity=0.428  Sum_probs=31.2

Q ss_pred             HHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          489 RATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       489 ~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      ...++|.-.+.||+|+||.||+|+.. +|+.||+|.+..
T Consensus        40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~   78 (370)
T cd05621          40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSK   78 (370)
T ss_pred             CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence            34466777789999999999999985 478999999853

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=94.80  E-value=0.028  Score=53.01  Aligned_cols=52  Identities=33%  Similarity=0.376  Sum_probs=37.9

Q ss_pred             cccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      .++..|++..       +.||+|..|+|||+.. +.|+..|.|++..... .-.++..+|+
T Consensus        75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl  128 (364)
T KOG0581|consen   75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILREL  128 (364)
T ss_pred             ccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHH
Confidence            4667777765       6799999999999998 4578899999954332 2245566665

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=94.80  E-value=0.051  Score=33.16  Aligned_cols=28  Identities=29%  Similarity=0.726  Sum_probs=15.3

Q ss_pred             ceecccchhhHHHHHHHHHhhheeeecc
Q 045304          436 ALLLGTVLPLSTIFMIVVILLILRYRKR  463 (540)
Q Consensus       436 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~  463 (540)
                      .+..+++++++++++++.+++++||||+
T Consensus        12 aIa~~VvVPV~vI~~vl~~~l~~~~rR~   39 (40)
T PF08693_consen   12 AIAVGVVVPVGVIIIVLGAFLFFWYRRK   39 (40)
T ss_pred             EEEEEEEechHHHHHHHHHHhheEEecc
Confidence            3444555665555555555555556554

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=94.79  E-value=0.017  Score=55.52  Aligned_cols=48  Identities=27%  Similarity=0.376  Sum_probs=34.3

Q ss_pred             ccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|..      ..+..||||++..... ...+.|..|+
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   89 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSEL   89 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHH
Confidence            4577788999999999999974      2345799999865432 2234566665

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=94.74  E-value=0.019  Score=56.16  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=27.4

Q ss_pred             cCCccCeeccCCCCcEEEEEecC--CCEEEEEEecc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQD--GMEVAVKVFHL  526 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~--g~~vAVK~l~~  526 (540)
                      +|.-...||+|+||.||+|...+  +..||||++..
T Consensus        31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~   66 (340)
T PTZ00426         31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEK   66 (340)
T ss_pred             hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEH
Confidence            45566889999999999998743  35899999854

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=94.73  E-value=0.035  Score=56.97  Aligned_cols=35  Identities=34%  Similarity=0.478  Sum_probs=30.7

Q ss_pred             ccCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~  527 (540)
                      ..|++ .-||+|++|.||+|++.+ |+.||||+++++
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~  155 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD  155 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence            45776 689999999999999988 999999999755

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=94.69  E-value=0.017  Score=57.28  Aligned_cols=43  Identities=26%  Similarity=0.385  Sum_probs=35.1

Q ss_pred             HHHHHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          484 YLELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       484 ~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      +.++....++|.-...||+|+||.||++... +|+.||+|++..
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~   78 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSK   78 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEH
Confidence            3445556678888899999999999999885 578999999853

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=94.69  E-value=0.022  Score=54.27  Aligned_cols=42  Identities=33%  Similarity=0.555  Sum_probs=32.1

Q ss_pred             CeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ..||+|+||.||+|+.. +|..||+|++........++|..|+
T Consensus        18 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~   60 (292)
T cd06644          18 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEI   60 (292)
T ss_pred             heecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHH
Confidence            56999999999999985 4789999999654433345566664

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=94.69  E-value=0.027  Score=55.15  Aligned_cols=35  Identities=31%  Similarity=0.547  Sum_probs=29.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      +.|...+.||+|+||.||+|+. .+|+.||||++..
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~   50 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSR   50 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecC
Confidence            4566778999999999999986 4689999999864

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=94.67  E-value=0.023  Score=56.10  Aligned_cols=39  Identities=33%  Similarity=0.486  Sum_probs=32.7

Q ss_pred             HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC  528 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~  528 (540)
                      ..++|.--.+||+|+||.||.+.=. .|...|.|+|....
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~  178 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSE  178 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHH
Confidence            4567888889999999999999774 48999999996543

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=94.64  E-value=0.026  Score=55.35  Aligned_cols=37  Identities=30%  Similarity=0.534  Sum_probs=30.7

Q ss_pred             HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ..+.|...+.||+|+||.||+|.- .+|..||||++..
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   50 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYR   50 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecc
Confidence            345677778899999999999985 4689999999854

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=94.63  E-value=0.026  Score=55.72  Aligned_cols=49  Identities=29%  Similarity=0.212  Sum_probs=35.1

Q ss_pred             hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc--CCcchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      .+.|.....||+|+||.||+|.- ..|..||||++....  ....+.+..|+
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~   71 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYREL   71 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHH
Confidence            35666778899999999999986 458899999996432  12234455554

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=94.58  E-value=0.026  Score=54.54  Aligned_cols=46  Identities=30%  Similarity=0.442  Sum_probs=33.3

Q ss_pred             CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC---cchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG---AFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~---~~~~F~~E~  539 (540)
                      |...+.||+|+||.||+|+. .+|..||||++......   ..++|..|+
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~   76 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEV   76 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHH
Confidence            55668899999999999997 46889999999643221   123465554

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=94.58  E-value=0.018  Score=54.95  Aligned_cols=48  Identities=29%  Similarity=0.410  Sum_probs=33.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEecC------CCEEEEEEecccc-CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|...+      ...||||++.... .+...+|.+|+
T Consensus        12 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~   66 (293)
T cd05053          12 DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEM   66 (293)
T ss_pred             hHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHH
Confidence            446666889999999999998742      3579999996432 22234466664

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=94.56  E-value=0.034  Score=52.83  Aligned_cols=46  Identities=28%  Similarity=0.223  Sum_probs=33.6

Q ss_pred             CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      |...+.||+|++|.||+|.. .+|+.||||++........+.|.+|+
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~   67 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEV   67 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHH
Confidence            44457899999999999986 56889999998644333344465554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=94.43  E-value=0.027  Score=56.81  Aligned_cols=44  Identities=41%  Similarity=0.653  Sum_probs=32.4

Q ss_pred             ccCeeccCCCCcEEEEEecC---C--CEEEEEEeccccCC-cchhhhhhc
Q 045304          496 ENNLIGRGGFGSVYKARIQD---G--MEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l~~---g--~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      ...+||+|-||.||+|++.+   |  ..||||.-+.++.- ..+-|+.|.
T Consensus       393 l~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa  442 (974)
T KOG4257|consen  393 LKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEA  442 (974)
T ss_pred             HHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHH
Confidence            34789999999999999843   3  35899988765533 344588774

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=94.38  E-value=0.026  Score=54.18  Aligned_cols=47  Identities=23%  Similarity=0.393  Sum_probs=32.4

Q ss_pred             cCCccCeeccCCCCcEEEEEe--------cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI--------QDGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l--------~~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      +|.....||+|+||.||+|..        .++..||||++.... ....+++.+|+
T Consensus        16 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~   71 (304)
T cd05101          16 KLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEM   71 (304)
T ss_pred             HeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHH
Confidence            455567899999999999974        234589999986432 22234566664

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=94.16  E-value=0.043  Score=54.29  Aligned_cols=36  Identities=28%  Similarity=0.253  Sum_probs=30.0

Q ss_pred             hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      .+.|.-.+.||+|+||.||+|.- ..++.||||++..
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   59 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR   59 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCc
Confidence            45677778899999999999986 3578999999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=94.08  E-value=0.023  Score=57.15  Aligned_cols=45  Identities=24%  Similarity=0.426  Sum_probs=35.9

Q ss_pred             CCccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ..-.+.+|-|.||.||.|++.. .-.||||.|+++.+. ..||+.|.
T Consensus       269 ItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMe-veEFLkEA  314 (1157)
T KOG4278|consen  269 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEA  314 (1157)
T ss_pred             eeeeeccCCCcccceeeeeeeccceeeehhhhhhcchh-HHHHHHHH
Confidence            3345789999999999999953 468999999877654 67888875

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.06  E-value=0.057  Score=55.17  Aligned_cols=38  Identities=32%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC  528 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~  528 (540)
                      -++|.-..++|+|.||+||.+.+. +++..|||.|+.+.
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~  405 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGD  405 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccc
Confidence            356777789999999999999994 57789999997765

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=94.03  E-value=0.04  Score=52.56  Aligned_cols=42  Identities=31%  Similarity=0.256  Sum_probs=31.3

Q ss_pred             CeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ..||+|+||.||+|.. .+|..||||++........+.|..|+
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~   70 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEV   70 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHH
Confidence            4599999999999987 45889999998654433344566664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=94.00  E-value=0.042  Score=54.08  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=30.5

Q ss_pred             HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ..+.|...+.||+|+||.||+|.- ..|+.||||++..
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   52 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR   52 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCC
Confidence            345677778899999999999975 3578999999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=93.93  E-value=0.019  Score=62.39  Aligned_cols=40  Identities=48%  Similarity=0.721  Sum_probs=32.6

Q ss_pred             HHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          488 CRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       488 ~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      -+.-++|-+-.++|+||||.|||++= -||+..||||+...
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~  515 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLK  515 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCc
Confidence            34566787888999999999999963 27999999999543

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=93.83  E-value=0.046  Score=51.79  Aligned_cols=44  Identities=41%  Similarity=0.561  Sum_probs=31.7

Q ss_pred             ccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhc
Q 045304          496 ENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ..+.||+|.||+||.+...+ |...|||..........++.+.|+
T Consensus        21 ~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei   65 (313)
T KOG0198|consen   21 KGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREI   65 (313)
T ss_pred             hhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHH
Confidence            44789999999999999965 899999998654321133344443

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=93.81  E-value=0.058  Score=51.83  Aligned_cols=34  Identities=35%  Similarity=0.575  Sum_probs=29.1

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      +|.....||+|+||.||+|+-. +|+.||||++..
T Consensus        13 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~   47 (310)
T cd07865          13 KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLM   47 (310)
T ss_pred             heEEEEEeecCCCEEEEEEEECCCCcEEEEEEEec
Confidence            5667788999999999999874 589999999854

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.70  E-value=0.036  Score=27.10  Aligned_cols=14  Identities=64%  Similarity=0.828  Sum_probs=4.7

Q ss_pred             CCCEeeCCCCCCCC
Q 045304          259 SLRTLSLGSNELTS  272 (540)
Q Consensus       259 ~L~~L~l~~n~l~~  272 (540)
                      +|+.|++++|+++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34444444444433

...

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=93.59  E-value=0.045  Score=57.36  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=35.1

Q ss_pred             ccCeeccCCCCcEEEEEecCC-CEEEEEEeccccCCcchhhhhhc
Q 045304          496 ENNLIGRGGFGSVYKARIQDG-MEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l~~g-~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      -+++|.+|||+.||.|....+ ..+|+||+-.....+.+...+||
T Consensus        41 V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI   85 (738)
T KOG1989|consen   41 VEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREI   85 (738)
T ss_pred             EEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHH
Confidence            358899999999999999776 99999999655555556666666

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.55  E-value=0.00046  Score=69.54  Aligned_cols=92  Identities=29%  Similarity=0.286  Sum_probs=44.7

Q ss_pred             hccCCCCCCeeeccCCccccccC----ccccCC-CCCCeeeeeCccccC----cCCccccCCCCCCeEEcCCCCCcc---
Q 045304          181 EISNLTNLIIIYLGGNKLNGSIP----ITLSKL-QKLQGLSLADNKLEG----SIPNNICRLTELYELDLGSNKFSR---  248 (540)
Q Consensus       181 ~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l-~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~---  248 (540)
                      .+...+.|+.|++++|.+...--    ..+... ..++.|++..|.++.    .+...+.....++.++++.|.+..   
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~  189 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL  189 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence            34455666666666666552111    111222 345556665555543    233344445666666666665531   


Q ss_pred             -ccCcc----CCCCCCCCEeeCCCCCCCC
Q 045304          249 -SIPAC----FSNLASLRTLSLGSNELTS  272 (540)
Q Consensus       249 -~~~~~----~~~l~~L~~L~l~~n~l~~  272 (540)
                       .++..    +....++++|++++|.++.
T Consensus       190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~  218 (478)
T KOG4308|consen  190 LVLSQALESAASPLSSLETLKLSRCGVTS  218 (478)
T ss_pred             HHHhhhhhhhhcccccHHHHhhhhcCcCh
Confidence             11111    2234556666666666553

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=93.54  E-value=0.05  Score=52.32  Aligned_cols=47  Identities=26%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             cCCccCeeccCCCCcEEEEEec--------CCCEEEEEEecccc-CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ--------DGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~--------~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||.||+|...        ++..||||.+.... .....+|..|+
T Consensus        19 ~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~   74 (307)
T cd05098          19 RLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEM   74 (307)
T ss_pred             HeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHH
Confidence            3455578999999999999752        23579999997532 22234465564

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.46  E-value=0.0003  Score=70.84  Aligned_cols=184  Identities=25%  Similarity=0.306  Sum_probs=83.4

Q ss_pred             CCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCC---ccccccccccCcEEEccCCccee----cCChh
Q 045304          109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP---GTSVGNLSHSLEYFYMPNCNVSG----GIPEE  181 (540)
Q Consensus       109 L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~~L~~L~l~~~~~~~----~~~~~  181 (540)
                      +.+|.|.+|.+....... +...+...+.|..|++++|.+...-.   ...+....+.+++|.+..|.+++    .+...
T Consensus        89 l~~L~L~~~~l~~~~~~~-l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEE-LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHH-HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            455555555554432111 33445555666666666666542100   00011101345555665565543    33445


Q ss_pred             ccCCCCCCeeeccCCcccc----ccCcccc----CCCCCCeeeeeCccccCc----CCccccCCCC-CCeEEcCCCCCcc
Q 045304          182 ISNLTNLIIIYLGGNKLNG----SIPITLS----KLQKLQGLSLADNKLEGS----IPNNICRLTE-LYELDLGSNKFSR  248 (540)
Q Consensus       182 l~~l~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~~~~~----~p~~~~~l~~-L~~L~l~~n~l~~  248 (540)
                      +.....++.+++..|.+..    .++..+.    ...++++|++.+|.++..    +...+...+. +..|++..|++..
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            5556667777777776531    1112222    345566666666655421    1112223333 4456666665542


Q ss_pred             c----cCccCCCC-CCCCEeeCCCCCCCC-----CCccccCCCCCcEEECCCCcc
Q 045304          249 S----IPACFSNL-ASLRTLSLGSNELTS-----IPLTFWNLKDILYLNFSSNFL  293 (540)
Q Consensus       249 ~----~~~~~~~l-~~L~~L~l~~n~l~~-----ip~~~~~l~~L~~L~L~~n~l  293 (540)
                      .    ....+..+ ..++.++++.|.++.     +...+..++.++++.+++|.+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            2    12223333 445555555555543     222333344444444444443

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=93.43  E-value=0.02  Score=59.60  Aligned_cols=34  Identities=35%  Similarity=0.568  Sum_probs=29.1

Q ss_pred             cCCccCeeccCCCCc-EEEEEecCCCEEEEEEeccc
Q 045304          493 RFSENNLIGRGGFGS-VYKARIQDGMEVAVKVFHLH  527 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~-Vykg~l~~g~~vAVK~l~~~  527 (540)
                      -|+.++++|.|.-|+ ||+|++ +|+.|||||+-.+
T Consensus       510 ~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e  544 (903)
T KOG1027|consen  510 FFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE  544 (903)
T ss_pred             eeccHHHcccCCCCcEEEEEee-CCceehHHHHhhH
Confidence            477888999999985 899999 4899999999544

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=93.42  E-value=0.054  Score=53.06  Aligned_cols=37  Identities=30%  Similarity=0.491  Sum_probs=31.0

Q ss_pred             HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      ..++|.....||+|+||.||+|... +|+.||||++..
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~   50 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSR   50 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEeccc
Confidence            3556777788999999999999985 578999999864

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>PHA02882 putative serine/threonine kinase; Provisional

Probab=93.36  E-value=0.066  Score=51.10  Aligned_cols=31  Identities=32%  Similarity=0.638  Sum_probs=23.1

Q ss_pred             CCccCeeccCCCCcEEEEEecCC----CEEEEEEe
Q 045304          494 FSENNLIGRGGFGSVYKARIQDG----MEVAVKVF  524 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~~g----~~vAVK~l  524 (540)
                      |.-.++||+|+||+||+|...++    ..+|+|+.
T Consensus        14 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~   48 (294)
T PHA02882         14 WKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIE   48 (294)
T ss_pred             eEEeeEEecCCCceEEEEEEcCCcccccceEEEec
Confidence            44457899999999999998654    35566653

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=93.34  E-value=0.065  Score=52.70  Aligned_cols=37  Identities=30%  Similarity=0.359  Sum_probs=30.9

Q ss_pred             HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ..+.|.....||+|+||.||+|.- .+|..||||++..
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~   51 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSR   51 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCc
Confidence            345677788999999999999986 4689999999853

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=93.22  E-value=0.076  Score=51.23  Aligned_cols=33  Identities=39%  Similarity=0.502  Sum_probs=26.9

Q ss_pred             CCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      |...+.||+|+||+||+|+.. +|..||||++..
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~   56 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSY   56 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEec
Confidence            334467999999999999874 578999999964

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=93.15  E-value=0.062  Score=58.32  Aligned_cols=36  Identities=39%  Similarity=0.578  Sum_probs=30.6

Q ss_pred             hccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      -..|.-...||+|+||+||+|+-.+|+.||+|.=+.
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P  732 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKP  732 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecC
Confidence            345666788999999999999999999999998643

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=93.11  E-value=0.061  Score=51.92  Aligned_cols=47  Identities=26%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             cCCccCeeccCCCCcEEEEEec--------CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ--------DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~--------~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||.||+|+-.        .+..||||++..... ....+|..|+
T Consensus        13 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~   68 (314)
T cd05099          13 RLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEM   68 (314)
T ss_pred             HeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHH
Confidence            4555688999999999999742        245799999864322 2234466664

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=93.10  E-value=0.08  Score=52.17  Aligned_cols=42  Identities=36%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             CeeccCCCCcEEEEEecC-CCEEEEEEeccccCCc---chhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGA---FKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~---~~~F~~E~  539 (540)
                      ..||+|.||.||+++-.. |+.+|+|.+.......   ......|+
T Consensus        41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev   86 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREV   86 (382)
T ss_pred             hhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHH
Confidence            679999999999999866 9999999996544322   23466665

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=92.68  E-value=0.065  Score=51.56  Aligned_cols=33  Identities=42%  Similarity=0.602  Sum_probs=27.2

Q ss_pred             CCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      |+..+.||+|+||.||+|... +|..||||++..
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~   50 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY   50 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEec
Confidence            444567999999999999974 578999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.56  E-value=0.11  Score=28.59  Aligned_cols=21  Identities=43%  Similarity=0.447  Sum_probs=11.9

Q ss_pred             CCCCEEEcccCcCccccchhhh
Q 045304           34 STLKVFEVSNNSLSGSLSSIAG   55 (540)
Q Consensus        34 ~~L~~L~l~~n~l~~~~~~~~~   55 (540)
                      ++|++|+|++|.++ .+|..+|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666655 5555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.56  E-value=0.11  Score=28.59  Aligned_cols=21  Identities=43%  Similarity=0.447  Sum_probs=11.9

Q ss_pred             CCCCEEEcccCcCccccchhhh
Q 045304           34 STLKVFEVSNNSLSGSLSSIAG   55 (540)
Q Consensus        34 ~~L~~L~l~~n~l~~~~~~~~~   55 (540)
                      ++|++|+|++|.++ .+|..+|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666655 5555543

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=92.47  E-value=0.18  Score=52.74  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=25.6

Q ss_pred             HHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEE
Q 045304          488 CRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKV  523 (540)
Q Consensus       488 ~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~  523 (540)
                      ...+..+...+.||+|+||+||+|.+.+. .+++|+
T Consensus       329 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~  363 (535)
T PRK09605        329 EEVKRRKIPDHLIGKGAEADIKKGEYLGR-DAVIKE  363 (535)
T ss_pred             cccccccCccceeccCCcEEEEEEeecCc-cceeEE
Confidence            33444556788999999999999999654 455554

>PHA03209 serine/threonine kinase US3; Provisional

Probab=92.21  E-value=0.16  Score=50.09  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=29.5

Q ss_pred             HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEec
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFH  525 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~  525 (540)
                      ...+|.....||+|+||.||+|+.. .+..||+|...
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~  100 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQ  100 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCC
Confidence            3456888889999999999999985 45789999753

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=92.19  E-value=0.12  Score=52.84  Aligned_cols=36  Identities=31%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC  528 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~  528 (540)
                      ..|++ +-|+.++.|.||+|++.+|+.||||+.+++-
T Consensus       126 ~eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi  161 (517)
T COG0661         126 SEFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRPGI  161 (517)
T ss_pred             HHcCC-CchhhhhHhhheeEEecCCCEEEEEecCCCh
Confidence            34654 5689999999999999999999999997754

>PHA03212 serine/threonine kinase US3; Provisional

Probab=92.10  E-value=0.12  Score=51.60  Aligned_cols=34  Identities=18%  Similarity=0.107  Sum_probs=28.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEec
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFH  525 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~  525 (540)
                      +.|.-.+.||+|+||.||++.- ..|+.||||+..
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~  126 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ  126 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh
Confidence            4577778899999999999986 457899999864

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=91.95  E-value=0.084  Score=49.86  Aligned_cols=37  Identities=35%  Similarity=0.625  Sum_probs=30.7

Q ss_pred             hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      -++|.--++||+|+||+||...- +.|+..|+|+|+..
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~   61 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKK   61 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhh
Confidence            35678889999999999999876 45889999999654

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=91.80  E-value=0.14  Score=46.32  Aligned_cols=37  Identities=14%  Similarity=-0.022  Sum_probs=31.0

Q ss_pred             hccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC  528 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~  528 (540)
                      .+.+...+++|.||||.||...- ++..+|||.+.+..
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~   66 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKV   66 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhc
Confidence            46788889999999999999766 57789999997543

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=91.31  E-value=0.15  Score=49.75  Aligned_cols=45  Identities=24%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             CccCeeccCCCCcEEEEEec--------CCCEEEEEEecccc-CCcchhhhhhc
Q 045304          495 SENNLIGRGGFGSVYKARIQ--------DGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       495 ~~~~~ig~G~~G~Vykg~l~--------~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      .-...||+|+||.||+|.-.        .+..||||.+.... ....++|..|+
T Consensus        15 ~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~   68 (334)
T cd05100          15 TLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEM   68 (334)
T ss_pred             eecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHH
Confidence            34467999999999999742        12479999886432 22235566665

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=91.27  E-value=0.27  Score=43.90  Aligned_cols=34  Identities=35%  Similarity=0.567  Sum_probs=27.6

Q ss_pred             CCccCeeccCCCCcEEEEE-ecCCCEEEEEEeccc
Q 045304          494 FSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH  527 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~  527 (540)
                      +.-...||+|+||.+|.|. +.+|..||||.=+..
T Consensus        17 y~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~   51 (341)
T KOG1163|consen   17 YKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSK   51 (341)
T ss_pred             eEEEEeecCCchhheeeeeeccCCceEEEEeeccc
Confidence            4445679999999999996 478999999987543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.04  E-value=0.0048  Score=54.13  Aligned_cols=93  Identities=14%  Similarity=0.119  Sum_probs=67.3

Q ss_pred             ccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccc
Q 045304           49 SLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNF  128 (540)
Q Consensus        49 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  128 (540)
                      .+|..-.......+.||++.|.+. .+-..+..++.|..|+++.|++. ..|..++....+.++++++|..+.      .
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~------~  103 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ------Q  103 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh------C
Confidence            444333356677788888877765 44555666777788888888776 567777878888888888887776      5


Q ss_pred             cccCCCCCCCCEEECcCCCCC
Q 045304          129 LSSLSNCKTLTYIDLSDNPLD  149 (540)
Q Consensus       129 ~~~l~~l~~L~~L~l~~n~l~  149 (540)
                      |.++...+.++++++.++.+.
T Consensus       104 p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  104 PKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             CccccccCCcchhhhccCcch
Confidence            667788888888888888764

>PHA03211 serine/threonine kinase US3; Provisional

Probab=91.04  E-value=0.18  Score=51.41  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=27.2

Q ss_pred             cCCccCeeccCCCCcEEEEEecC-CCEEEEEEe
Q 045304          493 RFSENNLIGRGGFGSVYKARIQD-GMEVAVKVF  524 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l  524 (540)
                      +|.-...||+|+||.||+|+... ++.||||+.
T Consensus       170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~  202 (461)
T PHA03211        170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAG  202 (461)
T ss_pred             CeEEEEEEccCCCeEEEEEEECCCCCEEEEecc
Confidence            46667889999999999999854 788999975

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.97  E-value=0.0049  Score=54.08  Aligned_cols=88  Identities=16%  Similarity=0.107  Sum_probs=54.9

Q ss_pred             cccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 045304           29 KVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRN  108 (540)
Q Consensus        29 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  108 (540)
                      .+......+.||++.|++. .+...+ ..++.|..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~-s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNF-SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccch-HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            4445566667777776654 333333 34566666777766665 56666666666666776666665 45666777777


Q ss_pred             CCEEECcCcccc
Q 045304          109 LNKVTLYNNYLT  120 (540)
Q Consensus       109 L~~L~l~~n~~~  120 (540)
                      ++++++-.|.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            777766666543

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=90.22  E-value=0.12  Score=48.72  Aligned_cols=30  Identities=37%  Similarity=0.525  Sum_probs=25.9

Q ss_pred             ccCeeccCCCCcEEEEEe-cCCCEEEEEEec
Q 045304          496 ENNLIGRGGFGSVYKARI-QDGMEVAVKVFH  525 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~  525 (540)
                      ..+.||+|.||.|.+|+- .+|..||||++.
T Consensus        26 ~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~   56 (359)
T KOG0660|consen   26 LIEPIGRGAYGVVCSAKDKRTGEKVAIKKIL   56 (359)
T ss_pred             ccccccCcceeeEEEEEEcCCCCEeehhhhh
Confidence            346799999999999987 568999999995

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=90.14  E-value=0.18  Score=43.85  Aligned_cols=29  Identities=41%  Similarity=0.589  Sum_probs=23.7

Q ss_pred             CeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ..||+|+||.|-|-.+ .+|+..||||+..
T Consensus        52 ~elGrGayG~vekmrh~~sg~imAvKri~~   81 (282)
T KOG0984|consen   52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRA   81 (282)
T ss_pred             hhhcCCccchhhheeeccCCeEEEEeeehh
Confidence            4599999998866654 5799999999964

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.07  E-value=0.27  Score=27.02  Aligned_cols=19  Identities=42%  Similarity=0.698  Sum_probs=10.7

Q ss_pred             CCCCEeeCCCCCCCCCCcc
Q 045304          258 ASLRTLSLGSNELTSIPLT  276 (540)
Q Consensus       258 ~~L~~L~l~~n~l~~ip~~  276 (540)
                      ++|++|+|++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4555666666666555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.07  E-value=0.27  Score=27.02  Aligned_cols=19  Identities=42%  Similarity=0.698  Sum_probs=10.7

Q ss_pred             CCCCEeeCCCCCCCCCCcc
Q 045304          258 ASLRTLSLGSNELTSIPLT  276 (540)
Q Consensus       258 ~~L~~L~l~~n~l~~ip~~  276 (540)
                      ++|++|+|++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4555666666666555543

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=89.76  E-value=0.16  Score=55.85  Aligned_cols=49  Identities=16%  Similarity=0.226  Sum_probs=34.7

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      .++|.-...||+|+||+||+|... .+..||+|.+.....  .....|..|+
T Consensus        12 l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI   63 (1021)
T PTZ00266         12 LNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEV   63 (1021)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHH
Confidence            345666688999999999999874 467899999864321  1234466665

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=89.73  E-value=0.15  Score=51.10  Aligned_cols=38  Identities=26%  Similarity=0.474  Sum_probs=31.1

Q ss_pred             cccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      .++|++|.+.       +-+|+|+-|.||.|.|. +..||||+.+.
T Consensus       120 eiPFe~IsEL-------eWlGSGaQGAVF~Grl~-netVAVKKV~e  157 (904)
T KOG4721|consen  120 EIPFEEISEL-------EWLGSGAQGAVFLGRLH-NETVAVKKVRE  157 (904)
T ss_pred             cCCHHHhhhh-------hhhccCcccceeeeecc-CceehhHHHhh
Confidence            4677776554       56999999999999996 68999999854

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=89.24  E-value=0.68  Score=43.36  Aligned_cols=42  Identities=17%  Similarity=0.111  Sum_probs=30.8

Q ss_pred             HHHHHHhccCCccCee--ccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          485 LELCRATDRFSENNLI--GRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       485 ~~l~~at~~f~~~~~i--g~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      .+.....++|.-.+.+  |+|+||.||+++- .+|..+|+|....
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~   51 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKA   51 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEeh
Confidence            4444445555555555  9999999999987 4578899999854

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=89.04  E-value=0.29  Score=50.33  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             CCccCeeccCCCCcEEEEEec-C-CCEEEEEEeccccCCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARIQ-D-GMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~-~-g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      |.-.++||+|+||.||+|.-. + ++.||+|++.....+....|..|+
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~  116 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSEL  116 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHH
Confidence            444578999999999999753 3 577899887543333334455564

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=88.72  E-value=0.32  Score=51.54  Aligned_cols=42  Identities=33%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             CeeccCCCCcEEEEEec--------CCCEEEEEEeccccCC-cchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQ--------DGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~--------~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +.+|+|.||.|++|.+.        ....||||.++..... ..+.|..|+
T Consensus       302 ~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El  352 (609)
T KOG0200|consen  302 KYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSEL  352 (609)
T ss_pred             ceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHH
Confidence            48999999999999873        1357999999765533 345677775

>PHA03207 serine/threonine kinase US3; Provisional

Probab=88.59  E-value=0.36  Score=48.21  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=27.2

Q ss_pred             cCCccCeeccCCCCcEEEEEecC---CCEEEEEEecc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQD---GMEVAVKVFHL  526 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~---g~~vAVK~l~~  526 (540)
                      .|.-...||+|+||.||++...+   +..||||++..
T Consensus        93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~  129 (392)
T PHA03207         93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG  129 (392)
T ss_pred             ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc
Confidence            45666789999999999998633   56899999854

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=88.55  E-value=0.16  Score=45.47  Aligned_cols=43  Identities=26%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             cCeeccCCCCcEEEEE-ecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          497 NNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ...+|+|||..||.++ +.++...|+||+.....++.+.-+.|+
T Consensus        26 ~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEi   69 (302)
T KOG2345|consen   26 QRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREI   69 (302)
T ss_pred             eeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHH
Confidence            4679999999999987 678889999999765544444455554

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=88.43  E-value=0.29  Score=45.49  Aligned_cols=52  Identities=27%  Similarity=0.384  Sum_probs=38.4

Q ss_pred             cHHHHHHHhccCCccCeeccCCCCcEEEEE-ecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          483 SYLELCRATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       483 ~~~~l~~at~~f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +|+|+-+.|+     +++|+|.||.|--.+ +..|...|||.+.......+....+||
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREV  126 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREV  126 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHH
Confidence            4678877776     689999999997664 567899999999765433344455555

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=88.39  E-value=0.17  Score=48.65  Aligned_cols=39  Identities=33%  Similarity=0.413  Sum_probs=31.5

Q ss_pred             HhccCCccCeeccCCCCcEEEEEecC----CCEEEEEEecccc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHC  528 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~  528 (540)
                      .-+.|...+.||+|.|++||+|++..    ...||+|.+...+
T Consensus        34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts   76 (418)
T KOG1167|consen   34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS   76 (418)
T ss_pred             hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc
Confidence            34567788999999999999999843    5689999996544

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=87.94  E-value=0.54  Score=47.98  Aligned_cols=30  Identities=37%  Similarity=0.579  Sum_probs=25.9

Q ss_pred             cCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          497 NNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ..+||+|.||.|-|+.= ..|+.||||.++.
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN  221 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKN  221 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEEEEeecc
Confidence            46899999999999975 4489999999964

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=86.95  E-value=0.71  Score=45.48  Aligned_cols=35  Identities=29%  Similarity=0.527  Sum_probs=27.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      +.+.-...||+|+||+||.|.- ..|..||||.+..
T Consensus        17 g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~   52 (370)
T KOG0583|consen   17 GKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDR   52 (370)
T ss_pred             CceeeeeeecCCCCeeEEEeeeccCCCeEEEEEech
Confidence            3344457799999999999965 5689999997654

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=86.79  E-value=0.68  Score=46.48  Aligned_cols=33  Identities=42%  Similarity=0.591  Sum_probs=27.0

Q ss_pred             ccCeeccCCCCcEEEEE-ecCCCEEEEEEecccc
Q 045304          496 ENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHC  528 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~  528 (540)
                      .-..||+|..|.||-|. ...++.||||++....
T Consensus       277 ~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~  310 (550)
T KOG0578|consen  277 DFKKIGQGATGGVYVARKISTKQEVAIKRMDLRK  310 (550)
T ss_pred             chhhhccccccceeeeeeccCCceEEEEEEEecc
Confidence            34569999999999995 5678999999996544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.50  E-value=0.1  Score=45.18  Aligned_cols=64  Identities=19%  Similarity=0.226  Sum_probs=26.8

Q ss_pred             cCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCc-ceecCChhccCCCCCCeeecc
Q 045304          131 SLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN-VSGGIPEEISNLTNLIIIYLG  194 (540)
Q Consensus       131 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~  194 (540)
                      .+.+++.++.|.+.+|.--+......++...++|+.|++++|. ++..--..+..+++|+.|.+.
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            3444445555555544332221112233333455555555443 332222334444555554443

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=86.39  E-value=0.64  Score=45.37  Aligned_cols=31  Identities=35%  Similarity=0.490  Sum_probs=26.5

Q ss_pred             CeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304          498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC  528 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~  528 (540)
                      .+||.|..++||+|.- +-+..||||++..+.
T Consensus        32 e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEk   63 (516)
T KOG0582|consen   32 EVIGVGASAVVYLARCIPTNEVVAIKIINLEK   63 (516)
T ss_pred             EEEeccceeEeeeeeecccCCEEEEEEeehhh
Confidence            5799999999999975 778999999996543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=86.31  E-value=0.52  Score=44.22  Aligned_cols=32  Identities=25%  Similarity=0.530  Sum_probs=26.0

Q ss_pred             cCCccCeeccCCCCcEEEEE-ecCCCEEEEEEe
Q 045304          493 RFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVF  524 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l  524 (540)
                      +|.-...||+|.||+.+.|+ |-++++||||-=
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfE   61 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFE   61 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEec
Confidence            34455789999999999996 557899999964

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=85.98  E-value=0.79  Score=44.37  Aligned_cols=34  Identities=35%  Similarity=0.519  Sum_probs=26.4

Q ss_pred             cCCccCeeccCCCCcEEEEEecCC--CEEEEEEecc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQDG--MEVAVKVFHL  526 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~g--~~vAVK~l~~  526 (540)
                      .|.-...||+|+||.||.+.=.+.  ..+|+|.-..
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~   54 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKK   54 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEe
Confidence            566678899999999999986543  3678887654

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=85.31  E-value=0.14  Score=51.99  Aligned_cols=41  Identities=32%  Similarity=0.537  Sum_probs=30.3

Q ss_pred             eccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhcC
Q 045304          500 IGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVECN  540 (540)
Q Consensus       500 ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~~  540 (540)
                      +|-|+||.||||+-.+ +...|-|++...+.....+|+.||+
T Consensus        40 LGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIe   81 (1187)
T KOG0579|consen   40 LGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIE   81 (1187)
T ss_pred             hcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhh
Confidence            7889999999999865 3445778886555545667887774

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=83.95  E-value=0.82  Score=47.34  Aligned_cols=42  Identities=29%  Similarity=0.486  Sum_probs=28.7

Q ss_pred             cCeeccCCCCcEEEEEecCC-CEEEEEEeccccCCcchhhhhh
Q 045304          497 NNLIGRGGFGSVYKARIQDG-MEVAVKVFHLHCSGAFKSFDVE  538 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l~~g-~~vAVK~l~~~~~~~~~~F~~E  538 (540)
                      .-++|+|.||+||-|.=.+. ..+|||-+.....+..+-...|
T Consensus       580 rvVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEE  622 (1226)
T KOG4279|consen  580 RVVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEE  622 (1226)
T ss_pred             eEEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHH
Confidence            34799999999999986544 4689999965443333333333

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=83.42  E-value=1.1  Score=43.25  Aligned_cols=31  Identities=32%  Similarity=0.534  Sum_probs=25.8

Q ss_pred             cCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          497 NNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      ...+|+|+||.|-.|.= .+|+.||||.++..
T Consensus       177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~kr  208 (475)
T KOG0615|consen  177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKR  208 (475)
T ss_pred             eeeecCCceeEEEEEEEcccCcEEEeeeeehh
Confidence            35699999999999864 57999999999643

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=83.17  E-value=0.44  Score=45.79  Aligned_cols=35  Identities=29%  Similarity=0.366  Sum_probs=28.1

Q ss_pred             eeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcch
Q 045304          499 LIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFK  533 (540)
Q Consensus       499 ~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~  533 (540)
                      .+|+|.||.|-+|.= ..|+.||||-++.+..++.+
T Consensus        60 tLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeq   95 (668)
T KOG0611|consen   60 TLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQ   95 (668)
T ss_pred             HhcCCcccceeehhhccCCcEeehhhhhhhhcccHH
Confidence            499999999999975 56999999999766544433

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=83.10  E-value=0.17  Score=49.30  Aligned_cols=36  Identities=28%  Similarity=0.581  Sum_probs=30.2

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~  527 (540)
                      +.|+.-.+||+||||.||-.... .|...|.|+|...
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KK  221 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKK  221 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHHH
Confidence            45888899999999999998874 4888999988543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.95  E-value=0.18  Score=43.72  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=49.8

Q ss_pred             CCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCccccc-CCcccc-CCCCCCEEEccCCc-ccccCCcc
Q 045304           26 IPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGT-IPHFIF-NASKLSLLELGDNS-FSGFIPDT  102 (540)
Q Consensus        26 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~n~-~~~~~~~~  102 (540)
                      .|.....-..++.+|-++..+...--..+ ..++.++.|.+.+|.-.+. --+.++ -.++|+.|+++.|. |+..--..
T Consensus        93 lp~~~~~~~~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   93 LPGPNADNVKIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             CCCCCCCcceEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            34333333456677777777664333333 5667777777777642211 001112 23678888888664 44333344


Q ss_pred             ccCCCCCCEEECcC
Q 045304          103 FGNLRNLNKVTLYN  116 (540)
Q Consensus       103 ~~~l~~L~~L~l~~  116 (540)
                      +.++++|+.|.+.+
T Consensus       172 L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHhhhhHHHHhcC
Confidence            56677777777654

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=82.23  E-value=1.2  Score=43.96  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=27.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      +.|.-...||+|.||.|-+|.= .+|+.||||.+..
T Consensus        97 Nqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K  132 (576)
T KOG0585|consen   97 NQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPK  132 (576)
T ss_pred             hheehhhhhcCCccceEEEEeecCCCcEEEEEeech
Confidence            3444456699999999988864 4689999999954

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=81.92  E-value=0.48  Score=44.01  Aligned_cols=31  Identities=42%  Similarity=0.590  Sum_probs=24.1

Q ss_pred             cCeeccCCCCcEEEEEecCC-----CEEEEEEeccc
Q 045304          497 NNLIGRGGFGSVYKARIQDG-----MEVAVKVFHLH  527 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l~~g-----~~vAVK~l~~~  527 (540)
                      ...||+|.||.||||+-.++     ...|+|+++.+
T Consensus        29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~   64 (438)
T KOG0666|consen   29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGE   64 (438)
T ss_pred             cceecccccceeeEeeeccCCcccchhhHHHHHhcc
Confidence            35699999999999976432     26899999754

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.85  E-value=0.24  Score=26.68  Aligned_cols=12  Identities=33%  Similarity=0.695  Sum_probs=4.0

Q ss_pred             CCCEEEcccCcC
Q 045304           35 TLKVFEVSNNSL   46 (540)
Q Consensus        35 ~L~~L~l~~n~l   46 (540)
                      +|++|+|++|.+
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            334444444433

...

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=81.73  E-value=1.6  Score=44.73  Aligned_cols=36  Identities=36%  Similarity=0.528  Sum_probs=30.2

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC  528 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~  528 (540)
                      ..|++ .-||.-+.|.||||++++|+.||||+-+++-
T Consensus       162 ~~f~~-~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l  197 (538)
T KOG1235|consen  162 SEFDE-EPIAAASLAQVHRARLKNGEDVAVKVQHPGL  197 (538)
T ss_pred             HhcCc-chhhhcchhheEEEEecCCCEEEEEecCcCh
Confidence            34654 4689999999999999999999999987653

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=81.60  E-value=0.26  Score=47.77  Aligned_cols=29  Identities=48%  Similarity=0.775  Sum_probs=23.8

Q ss_pred             cCeeccCCCCcEEEEE-ecCCCEEEEEEec
Q 045304          497 NNLIGRGGFGSVYKAR-IQDGMEVAVKVFH  525 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~  525 (540)
                      -+++|+|||..||||. +...+.||||.=.
T Consensus       468 LhLLGrGGFSEVyKAFDl~EqRYvAvKIHq  497 (775)
T KOG1151|consen  468 LHLLGRGGFSEVYKAFDLTEQRYVAVKIHQ  497 (775)
T ss_pred             HHHhccccHHHHHHhcccchhheeeEeeeh
Confidence            3679999999999996 5566889999753

>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]

Probab=80.11  E-value=1.4  Score=46.51  Aligned_cols=21  Identities=29%  Similarity=0.648  Sum_probs=17.1

Q ss_pred             CCccCeeccCCCCcEEEEEec
Q 045304          494 FSENNLIGRGGFGSVYKARIQ  514 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~  514 (540)
                      ....+.+|+|+||+||-|.=.
T Consensus       996 it~~relg~gsfg~Vy~g~~n 1016 (1025)
T KOG4258|consen  996 ITLGRELGQGSFGMVYEGNAN 1016 (1025)
T ss_pred             HhhhhhhccCccceEEEecCC
Confidence            445577999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	540
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-28
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-28
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-20
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-09
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-08
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-07
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-07
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-07
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		4e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		4e-07
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		5e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-06
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-04
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 181/427 (42%), Gaps = 59/427 (13%)
Query: 56  VRLPNLEVLRMRSNNFCGTIPHFIFN-ASKLSLLELGDNSFSG-FIPDTFGNLRN-LNKV 112
           +++  L+VL +  N F G +P  + N ++ L  L+L  N+FSG  +P+   N +N L ++
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC 172
            L NN  T          +LSNC  L  + LS N L G +P +S+G+LS   +     N 
Sbjct: 397 YLQNNGFTGKIP-----PTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNM 450
Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICR 232
            + G IP+E+  +  L  + L  N L G IP              ++N+L G IP  I R
Sbjct: 451 -LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN------------ELTSIPLTFWNL 280
           L  L  L L +N FS +IPA   +  SL  L L +N            +   I   F   
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 281 KDILYL-----------------------------------NFSSNFLTGPLPLEIENLK 305
           K  +Y+                                   N +S    G      +N  
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXXXXXXXXX 365
            ++ +D S N  SG IP  IGS+  L  L +G+N + GSIP  +GDL             
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 366 XGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCK 425
            G IP ++  L+ L +++LS N L+G IP  G F  F    F  N  LCG P  R  P  
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 749
Query: 426 TS--THH 430
                HH
Sbjct: 750 ADGYAHH 756

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  121 bits (304), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 179/418 (42%), Gaps = 57/418 (13%)
Query: 56  VRLPNLEVLRMRSNNFCGTIPHFIFN-ASKLSLLELGDNSFSG-FIPDTFGNLRN-LNKV 112
           +++  L+VL +  N F G +P  + N ++ L  L+L  N+FSG  +P+   N +N L ++
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC 172
            L NN  T          +LSNC  L  + LS N L G +P +S+G+LS   +     N 
Sbjct: 400 YLQNNGFTGKIP-----PTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNM 453
Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICR 232
            + G IP+E+  +  L  + L  N L G IP              ++N+L G IP  I R
Sbjct: 454 -LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN------------ELTSIPLTFWNL 280
           L  L  L L +N FS +IPA   +  SL  L L +N            +   I   F   
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 281 KDILYL-----------------------------------NFSSNFLTGPLPLEIENLK 305
           K  +Y+                                   N +S    G      +N  
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXXXXXXXXX 365
            ++ +D S N  SG IP  IGS+  L  L +G+N + GSIP  +GDL             
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 366 XGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPP 423
            G IP ++  L+ L +++LS N L+G IP  G F  F    F  N  LCG P  R  P
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 8/250 (3%)
Query: 178 IPEEISNLTNLIIIYLGG-NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTEL 236
           IP  ++NL  L  +Y+GG N L G IP                  + G+IP+ + ++  L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILY-LNFSSNFLT 294
             LD   N  S ++P   S+L +L  ++   N ++ +IP ++ +   +   +  S N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 295 GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIX 354
           G +P    NL  L  +D S N   G      GS K  Q + +  N L   +   +G    
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 355 XXXXXXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLC 414
                       GT+P  L +L +L  LN+SFN L GEIP+GG+   F   ++  N+ LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 415 GSPNLRVPPC 424
           GSP   +P C
Sbjct: 306 GSP---LPAC 312

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
           +IP+NI   T+  +LDL SNK S      F  L  LR L L  N+L ++P   F  LK++
Sbjct: 30  AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 284 LYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
             L  + N L   LP+ + + L  L  +    N    + P    SL  L YL +GYN LQ
Sbjct: 88  ETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 343 GSIPYSIGDLIXXXXXXXXXXXXXGTIPV-SLEKLSYLEDLNLSFNKLAGEIPRGG 397
            S+P  + D +               +P  + +KL+ L+ L L  N+L   +P G 
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 141/334 (42%), Gaps = 60/334 (17%)
Query: 53  IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
           I GV  L NL  +   +N      P  + N +KL  + + +N  +   P    NL NL  
Sbjct: 56  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------------------SSTSDLNF------LSSLSNC 135
           +TL+NN +T                              +S   LNF      L  L+N 
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL 171
Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
            TL  +D+S N +  I    SV     +LE     N  +S   P  I  LTNL  + L G
Sbjct: 172 TTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNG 225
Query: 196 NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
           N+L      T            A+N++    P  +  LT+L EL LG+N+ S   P   +
Sbjct: 226 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 256 NLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
            L +L  L L  N+L  I P++  NLK++ YL    N ++   P  + +L  L  + FS 
Sbjct: 280 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSN 335
Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
           N  S V  +++ +L  + +L  G+N++    P +
Sbjct: 336 NKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 367

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 462 KRVKPPPNDANMPP-------VATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQ 514
           +R KP  +  ++P        +   +RFS  EL  A+D FS  N++GRGGFG VYK R+ 
Sbjct: 1   RRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA 60
Query: 515 DGMEVAVK 522
           DG  VAVK
Sbjct: 61  DGTLVAVK 68

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 142/361 (39%), Gaps = 65/361 (18%)
Query: 11  NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRSNN 70
           N+ +L L+HN+L  + PT     S L + +            +  + LP L+VL ++ N 
Sbjct: 26  NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQI-LPLLKVLNLQHNE 84
Query: 71  FCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS-------- 122
                       + L+ L+L  NS      + F N +NL K+ L +N L+S+        
Sbjct: 85  LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQL 144
Query: 123 -----------------TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG--TSVGNLSHS 163
                            + +L FL +     +L  +DLS NPL    PG   ++G L   
Sbjct: 145 ENLQELLLAKNKILALRSEELEFLGN----SSLRKLDLSSNPLKEFSPGCFQTIGKLFAL 200
Query: 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLE 223
           L      N +++  +  E+SN T++  + L  N+L  +                +++   
Sbjct: 201 LLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLAT----------------SESTFS 243
Query: 224 GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PLTFWNLKD 282
           G       + T L +LDL  N         FS L SLR LSL  N +  + P +F+ L +
Sbjct: 244 G------LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSN 297
Query: 283 ILYLNFSSNFLTGPLPL---------EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQY 333
           + YL+    F    + L           + LK L  ++   NN       T   L  L+Y
Sbjct: 298 LRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKY 357
Query: 334 L 334
           L
Sbjct: 358 L 358

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 143/335 (42%), Gaps = 61/335 (18%)
Query: 53  IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
           I GV  L NL  +   +N      P  + N +KL  + + +N  +   P    NL NL  
Sbjct: 56  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------SSTSDLNFLSSLS-------------------N 134
           +TL+NN +T                  ++ SD++ LS L+                   N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG 194
             TL  +D+S N +  I    SV     +LE     N  +S   P  I  LTNL  + L 
Sbjct: 172 LTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLN 225
Query: 195 GNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACF 254
           GN+L      T            A+N++    P  +  LT+L EL LG+N+ S   P   
Sbjct: 226 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 279
Query: 255 SNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
           + L +L  L L  N+L  I P++  NLK++ YL    N ++   P  + +L  L  + FS
Sbjct: 280 AGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFS 335
Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
            N  S V  +++ +L  + +L  G+N++    P +
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 480 RRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVK 522
           +RFS  EL  A+D F   N++GRGGFG VYK R+ DG  VAVK
Sbjct: 18  KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVK 60

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 143/334 (42%), Gaps = 60/334 (17%)
Query: 53  IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
           I GV  L NL  +   +N      P  + N +KL  + + +N  +   P    NL NL  
Sbjct: 60  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 115
Query: 112 VTLYNNYLT------------------SSTSDLNFLSSLS------------------NC 135
           +TL+NN +T                  ++ SD++ LS L+                  N 
Sbjct: 116 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 175
Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
            TL  +D+S N +  I    SV     +LE     N  +S   P  I  LTNL  + L G
Sbjct: 176 TTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNG 229
Query: 196 NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
           N+L      T            A+N++    P  +  LT+L EL LG+N+ S   P   +
Sbjct: 230 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 283
Query: 256 NLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
            L +L  L L  N+L  I P++  NLK++ YL    N ++   P  + +L  L  + F+ 
Sbjct: 284 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 339
Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
           N  S V  +++ +L  + +L  G+N++    P +
Sbjct: 340 NKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 371

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 140/334 (41%), Gaps = 60/334 (17%)
Query: 53  IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
           I GV  L NL  +   +N      P  + N +KL  + + +N  +   P    NL NL  
Sbjct: 56  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------------------SSTSDLNF------LSSLSNC 135
           +TL+NN +T                              +S   LNF      L  L+N 
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL 171
Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
            TL  +D+S N +  I    SV     +LE     N  +S   P  I  LTNL  + L G
Sbjct: 172 TTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNG 225
Query: 196 NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
           N+L      T            A+N++    P  +  LT+L EL LG+N+ S   P   +
Sbjct: 226 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 256 NLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
            L +L  L L  N+L  I P++  NLK++ YL    N ++   P  + +L  L  + F  
Sbjct: 280 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 335
Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
           N  S V  +++ +L  + +L  G+N++    P +
Sbjct: 336 NKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 367

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 140/335 (41%), Gaps = 61/335 (18%)
Query: 53  IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
           I GV  L NL  +   +N      P  + N +KL  + + +N  +   P    NL NL  
Sbjct: 56  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------------------SSTSDLNF-------LSSLSN 134
           +TL+NN +T                              +S   LNF       L  L+N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLAN 171
Query: 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG 194
             TL  +D+S N +  I    SV     +LE     N  +S   P  I  LTNL  + L 
Sbjct: 172 LTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLN 225
Query: 195 GNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACF 254
           GN+L      T            A+N++    P  +  LT+L EL LG+N+ S   P   
Sbjct: 226 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 279
Query: 255 SNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
           + L +L  L L  N+L  I P++  NLK++ YL    N ++   P  + +L  L  + F 
Sbjct: 280 AGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 335
Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
            N  S V  +++ +L  + +L  G+N++    P +
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 142/334 (42%), Gaps = 60/334 (17%)
Query: 53  IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
           I GV  L NL  +   +N      P  + N +KL  + + +N  +   P    NL NL  
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116
Query: 112 VTLYNNYLT------------------SSTSDLNFLSSLS------------------NC 135
           +TL+NN +T                  ++ SD++ LS L+                  N 
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 176
Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
            TL  +D+S N +  I    SV     +LE     N  +S   P  I  LTNL  + L G
Sbjct: 177 TTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNG 230
Query: 196 NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
           N+L      T            A+N++    P  +  LT+L EL LG+N+ S   P   +
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284
Query: 256 NLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
            L +L  L L  N+L  I P++  NLK++ YL    N ++   P  + +L  L  + F  
Sbjct: 285 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340
Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
           N  S V  +++ +L  + +L  G+N++    P +
Sbjct: 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 372

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 142/335 (42%), Gaps = 61/335 (18%)
Query: 53  IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
           I GV  L NL  +   +N      P  + N +KL  + + +N  +   P    NL NL  
Sbjct: 56  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------SSTSDLNFLSSLS-------------------N 134
           +TL+NN +T                  ++ SD++ LS L+                   N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG 194
             TL  +D+S N +  I    SV     +LE     N  +S   P  I  LTNL  + L 
Sbjct: 172 LTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLN 225
Query: 195 GNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACF 254
           GN+L      T            A+N++    P  +  LT+L EL LG+N+ S   P   
Sbjct: 226 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 279
Query: 255 SNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
           + L +L  L L  N+L  I P++  NLK++ YL    N ++   P  + +L  L  + F 
Sbjct: 280 AGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 335
Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
            N  S V  +++ +L  + +L  G+N++    P +
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLP 298
           DL  +K    + + FS+   L  L+L  NE+  I    FW L  +L LN S NFL     
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351
              ENL  L  +D S N+   +   +   L  L+ L +  N+L+ S+P  I D
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 28/93 (30%)
Query: 184 NLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNI-CRLTELYELDLG 242
           +LT L  +YLGGN+L                          S+P+ +  RLT+L EL L 
Sbjct: 105 HLTQLDKLYLGGNQLK-------------------------SLPSGVFDRLTKLKELRLN 139
Query: 243 SNKFSRSIPA-CFSNLASLRTLSLGSNELTSIP 274
           +N+  +SIPA  F  L +L+TLSL +N+L S+P
Sbjct: 140 TNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 28/94 (29%)
Query: 183 SNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNI-CRLTELYELDL 241
            +LT L  +YLGGN+L                          S+P+ +  RLT+L EL L
Sbjct: 104 DHLTQLDKLYLGGNQLK-------------------------SLPSGVFDRLTKLKELRL 138
Query: 242 GSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIP 274
            +N+  +SIPA  F  L +L+TLSL +N+L S+P
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 88/226 (38%), Gaps = 34/226 (15%)
Query: 86  SLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSD 145
           +LL+L +N  S    D F  L++L  + L NN ++          + S  + L  + +S 
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-----KAFSPLRKLQKLYISK 111
Query: 146 NPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGS---- 201
           N L  I P     NL  SL    + +  +        S L N+  I +GGN L  S    
Sbjct: 112 NHLVEIPP-----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
Query: 202 ------------------IPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGS 243
                               I               NK++     ++ R ++LY L LG 
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLK--DILYLN 287
           N+         S L +LR L L +N+L+ +P    +LK   ++YL+
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	540
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-122
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-70
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-70
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-49
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	5e-17
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-06
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-08
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-05
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	5e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	7e-05
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	9e-05
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-04
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-04
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-04
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-04
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	3e-04
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	3e-04
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-04
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-04
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-04
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	4e-04
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-04
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	4e-04
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-04
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	5e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	5e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	6e-04
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	6e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-04
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	7e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	7e-04
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  376 bits (967), Expect = e-122
 Identities = 133/438 (30%), Positives = 203/438 (46%), Gaps = 20/438 (4%)

Query: 1   EIPHE-IGNLRNLELLVLSHNKLVGVIPTKVFNVST-LKVFEVSNNSLSGSL-SSIAGVR 57
           E+P + +  +R L++L LS N+  G +P  + N+S  L   ++S+N+ SG +  ++    
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 58  LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
              L+ L +++N F G IP  + N S+L  L L  N  SG IP + G+L  L  + L+ N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
            L            L   KTL  + L  N L G +P + + N + +L +  + N  ++G 
Sbjct: 453 MLEGE-----IPQELMYVKTLETLILDFNDLTGEIP-SGLSNCT-NLNWISLSNNRLTGE 505

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
           IP+ I  L NL I+ L  N  +G+IP  L   + L  L L  N   G+IP  + + +   
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--- 562

Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT---SIPLTFWNLKDILYLNFSSNFLT 294
              + +N  +        N    +      N L            L      N +S    
Sbjct: 563 -GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 295 GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIS 354
           G      +N   ++ +D S N  SG IP  IGS+  L  L +G+N + GSIP  +GDL  
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 355 LKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLC 414
           L  L+LS+N L G IP ++  L+ L +++LS N L+G IP  G F  F    F  N  LC
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741

Query: 415 GSPNLRVPPCKTSTHHTS 432
           G P   +P C  S     
Sbjct: 742 GYP---LPRCDPSNADGY 756

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  312 bits (802), Expect = 6e-98
 Identities = 114/400 (28%), Positives = 180/400 (45%), Gaps = 16/400 (4%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           +    I     L+LL +S N+ VG IP     + +L+   ++ N  +G +          
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT 295

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIP-DTFGNLRNLNKVTLYNNYL 119
           L  L +  N+F G +P F  + S L  L L  N+FSG +P DT   +R L  + L  N  
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 120 TSSTSDLNFLSSLSNCKT-LTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           +          SL+N    L  +DLS N   G +      N  ++L+  Y+ N   +G I
Sbjct: 356 SGE-----LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238
           P  +SN + L+ ++L  N L+G+IP +L  L KL+ L L  N LEG IP  +  +  L  
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPL 297
           L L  N  +  IP+  SN  +L  +SL +N LT  IP     L+++  L  S+N  +G +
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS 357
           P E+ + + L+ +D + N F+G IP  +    G     +  N + G     I +    K 
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKE 586

Query: 358 LNLSNN--NLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPR 395
            + + N     G     L +LS     N++     G    
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  310 bits (797), Expect = 3e-97
 Identities = 121/407 (29%), Positives = 192/407 (47%), Gaps = 17/407 (4%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            IP  +G+   L+ L +S NKL G     +   + LK+  +S+N   G +  +    L +
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKS 270

Query: 61  LEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL 119
           L+ L +  N F G IP F+      L+ L+L  N F G +P  FG+   L  + L +N  
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
           +        + +L   + L  +DLS N   G LP  S+ NLS SL    + + N SG I 
Sbjct: 331 SGELP----MDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPIL 385

Query: 180 EEISN--LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
             +       L  +YL  N   G IP TLS   +L  L L+ N L G+IP+++  L++L 
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGP 296
           +L L  N     IP     + +L TL L  N+LT  IP    N  ++ +++ S+N LTG 
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLK 356
           +P  I  L+ L  +  S N+FSG IP  +G  + L +L +  N   G+IP ++       
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ---- 561

Query: 357 SLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFS 403
           S  ++ N ++G   V ++     ++ + + N L  +  R       S
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  309 bits (795), Expect = 6e-97
 Identities = 124/415 (29%), Positives = 195/415 (46%), Gaps = 26/415 (6%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGV-RLP 59
            +   + +L  LE L LS++ + G +       ++L   ++S NSLSG ++++  +    
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126

Query: 60  NLEVLRMRSNNFCGTIP-HFIFNASKLSLLELGDNSFSGFIPDTF---GNLRNLNKVTLY 115
            L+ L + SN              + L +L+L  NS SG     +        L  + + 
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 116 NNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS 175
            N ++           +S C  L ++D+S N     +P   +G+ S +L++  +    +S
Sbjct: 187 GNKISGDV-------DVSRCVNLEFLDVSSNNFSTGIP--FLGDCS-ALQHLDISGNKLS 236

Query: 176 GGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLT 234
           G     IS  T L ++ +  N+  G IP     L+ LQ LSLA+NK  G IP+ +     
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACD 294

Query: 235 ELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPL-TFWNLKDILYLNFSSNF 292
            L  LDL  N F  ++P  F + + L +L+L SN  +  +P+ T   ++ +  L+ S N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 293 LTGPLPLEIENLKV-LVGIDFSVNNFSGVIPTTIG--SLKGLQYLFVGYNRLQGSIPYSI 349
            +G LP  + NL   L+ +D S NNFSG I   +       LQ L++  N   G IP ++
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 350 GDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSA 404
            +   L SL+LS N LSGTIP SL  LS L DL L  N L GEIP+         
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKT 467

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  281 bits (720), Expect = 5e-86
 Identities = 105/406 (25%), Positives = 184/406 (45%), Gaps = 22/406 (5%)

Query: 7   GNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
             + +++L     N     + + + +++ L+   +SN+ ++GS+S        +L  L +
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK--CSASLTSLDL 107

Query: 67  RSNNFCGTIPHF--IFNASKLSLLELGDNSFSGFIPDT-FGNLRNLNKVTLYNNYLTSST 123
             N+  G +     + + S L  L +  N+       +    L +L  + L  N ++ + 
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 124 SDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEIS 183
                      C  L ++ +S N + G +    V     +LE+  + + N S GIP  + 
Sbjct: 168 VVG--WVLSDGCGELKHLAISGNKISGDVD---VSRCV-NLEFLDVSSNNFSTGIP-FLG 220

Query: 184 NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS 243
           + + L  + + GNKL+G     +S   +L+ L+++ N+  G IP     L  L  L L  
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAE 278

Query: 244 NKFSRSIPAC-FSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLPLE- 300
           NKF+  IP        +L  L L  N    ++P  F +   +  L  SSN  +G LP++ 
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKG-LQYLFVGYNRLQGSIPYSIGD--LISLKS 357
           +  ++ L  +D S N FSG +P ++ +L   L  L +  N   G I  ++      +L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 358 LNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFS 403
           L L NN  +G IP +L   S L  L+LSFN L+G IP   S G+ S
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS--SLGSLS 442

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  255 bits (653), Expect = 3e-76
 Identities = 92/357 (25%), Positives = 158/357 (44%), Gaps = 19/357 (5%)

Query: 57  RLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN 116
           ++ ++++     N     +   + + + L  L L ++  +G +   F    +L  + L  
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109

Query: 117 NYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSG 176
           N L+     +  L+SL +C  L ++++S N LD     +    L+ SLE   +   ++SG
Sbjct: 110 NSLSGP---VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN-SLEVLDLSANSISG 165

Query: 177 GIPEEI---SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRL 233
                         L  + + GNK++G + +  S+   L+ L ++ N     IP  +   
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 234 TELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNF 292
           + L  LD+  NK S       S    L+ L++ SN+    IP     LK + YL+ + N 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280

Query: 293 LTGPLPLEIE-NLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPY-SIG 350
            TG +P  +      L G+D S N+F G +P   GS   L+ L +  N   G +P  ++ 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 351 DLISLKSLNLSNNNLSGTIPVSLEKLSY-LEDLNLSFNKLAGEIPRGGSFGNFSAES 406
            +  LK L+LS N  SG +P SL  LS  L  L+LS N  +G I    +       +
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--NLCQNPKNT 395

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  273 bits (700), Expect = 4e-88
 Identities = 91/297 (30%), Positives = 139/297 (46%), Gaps = 30/297 (10%)

Query: 130 SSLSNCKTLTYIDLSDNPLDGILP-GTSVGNLSHSLEYFYMPNCN-VSGGIPEEISNLTN 187
            + +    +  +DLS   L    P  +S+ NL   L + Y+   N + G IP  I+ LT 
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 188 LIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS 247
           L  +Y+    ++G+IP  LS+++ L  L  + N L G++P +I  L  L  +    N+ S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 248 RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVL 307
            +IP  + + + L T                       +  S N LTG +P    NL  L
Sbjct: 163 GAIPDSYGSFSKLFT----------------------SMTISRNRLTGKIPPTFANLN-L 199

Query: 308 VGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367
             +D S N   G      GS K  Q + +  N L   +   +G   +L  L+L NN + G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258

Query: 368 TIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPC 424
           T+P  L +L +L  LN+SFN L GEIP+GG+   F   ++  N+ LCGSP   +P C
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP---LPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  193 bits (494), Expect = 9e-58
 Identities = 74/289 (25%), Positives = 119/289 (41%), Gaps = 18/289 (6%)

Query: 17  LSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSL---SSIAGVRLPNLEVLRMRS-NNFC 72
             +   +GV+         +   ++S  +L       SS+A   LP L  L +   NN  
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLV 90

Query: 73  GTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSL 132
           G IP  I   ++L  L +   + SG IPD    ++ L  +    N L+ +        S+
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-----LPPSI 145

Query: 133 SNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIY 192
           S+   L  I    N + G +P  S G+ S       +    ++G IP   +NL NL  + 
Sbjct: 146 SSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 193 LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPA 252
           L  N L G   +     +  Q + LA N L   +   +     L  LDL +N+   ++P 
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 253 CFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSN-FLTG-PLP 298
             + L  L +L++  N L   IP    NL+      +++N  L G PLP
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (474), Expect = 8e-55
 Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 18/280 (6%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGV--IPTKVFNVSTLKVFEVSN-NSLSGSL-SSIAGVR 57
           +         +  L LS   L     IP+ + N+  L    +   N+L G +  +IA  +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--K 99

Query: 58  LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
           L  L  L +   N  G IP F+     L  L+   N+ SG +P +  +L NL  +T   N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 118 YLTSSTSDLNFLSSLSNCKTL-TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSG 176
            ++ +        S  +   L T + +S N L G +P  +  NL  +L +  +    + G
Sbjct: 160 RISGAIP-----DSYGSFSKLFTSMTISRNRLTGKIP-PTFANL--NLAFVDLSRNMLEG 211

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
                  +  N   I+L  N L   +   +   + L GL L +N++ G++P  + +L  L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNE-LTSIPL 275
           + L++  N     IP    NL      +  +N+ L   PL
Sbjct: 271 HSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  166 bits (424), Expect = 1e-47
 Identities = 71/229 (31%), Positives = 99/229 (43%), Gaps = 14/229 (6%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSL-SSIAGVRLP 59
            IP  I  L  L  L ++H  + G IP  +  + TL   + S N+LSG+L  SI+   LP
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS--SLP 149

Query: 60  NLEVLRMRSNNFCGTIPHFIFNASKLS-LLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
           NL  +    N   G IP    + SKL   + +  N  +G IP TF NL NL  V L  N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           L    S         + K    I L+ N L   L    VG    +L    + N  + G +
Sbjct: 209 LEGDAS-----VLFGSDKNTQKIHLAKNSLAFDLG--KVGLSK-NLNGLDLRNNRIYGTL 260

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP 227
           P+ ++ L  L  + +  N L G IP     LQ+    + A+NK     P
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  159 bits (404), Expect = 1e-44
 Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 8/193 (4%)

Query: 214 GLSLADNKLEGSIPNNICRLTELYELDLGSNKFS--RSIPACFSNLASLRTLSL-GSNEL 270
                +    G + +   +   +  LDL          IP+  +NL  L  L + G N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 271 T-SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLK 329
              IP     L  + YL  +   ++G +P  +  +K LV +DFS N  SG +P +I SL 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 330 GLQYLFVGYNRLQGSIPYSIGDLISL-KSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
            L  +    NR+ G+IP S G    L  S+ +S N L+G IP +   L+ L  ++LS N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208

Query: 389 LAGEIPRGGSFGN 401
           L G+      FG+
Sbjct: 209 LEGDASV--LFGS 219

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.7 bits (208), Expect = 7e-18
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS--IPYSIGDLISLKSLNLSN-NNL 365
             D     + GV+  T      +  L +    L     IP S+ +L  L  L +   NNL
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 366 SGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFS 403
            G IP ++ KL+ L  L ++   ++G IP         
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPD--FLSQIK 125

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  235 bits (602), Expect = 4e-70
 Identities = 72/434 (16%), Positives = 145/434 (33%), Gaps = 47/434 (10%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVG----VIPTKVFNVSTLKVFEVSNNSLSGS-LSSIAG 55
            +P  IG L  LE+L L  +          P  +    + +  +        + +     
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 56  VRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY 115
               +L    + S+    +I        K + +    N+ +  +      L  L +  + 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214

Query: 116 NNYLTSS-TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV 174
           N+   +    +     +    +     DL               NL   L    + NC  
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDL------------KWDNLK-DLTDVEVYNCPN 261

Query: 175 SGGIPEEISNLTNLIIIYLGGNKL--------NGSIPITLSKLQKLQGLSLADNKL-EGS 225
              +P  +  L  + +I +  N+         +          +K+Q + +  N L    
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 226 IPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFW-NLKDIL 284
           +  ++ ++ +L  L+   N+    +PA F +   L +L+L  N++T IP  F    + + 
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 285 YLNFSSNFLTG-PLPLEIENLKVLVGIDFSVNNFSGV-------IPTTIGSLKGLQYLFV 336
            L+F+ N L   P   + +++ V+  IDFS N    V       +  T      +  + +
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 337 GYNRLQGSIPYSIGDLISLKSLNLSNNNLSG-------TIPVSLEKLSYLEDLNLSFNKL 389
             N++             L S+NL  N L+            + +    L  ++L FNKL
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

Query: 390 AGEIPRGGSFGNFS 403
              +          
Sbjct: 501 TK-LSDDFRATTLP 513

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  235 bits (601), Expect = 6e-70
 Identities = 68/426 (15%), Positives = 136/426 (31%), Gaps = 50/426 (11%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            +   +  L  L    + ++  V     + +                 +        L +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWD-NLKD 250

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSF--------SGFIPDTFGNLRNLNKV 112
           L  + + +      +P F+    ++ L+ +  N                       +  +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC 172
            +  N L +   +    +SL   K L  ++   N L+G LP  + G+    L    +   
Sbjct: 311 YIGYNNLKTFPVE----TSLQKMKKLGMLECLYNQLEGKLP--AFGSEI-KLASLNLAYN 363

Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLS--KLQKLQGLSLADNKLEG------ 224
            ++            +  +    NKL   IP       +  +  +  + N++        
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 225 -SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP--------L 275
             +     +   +  ++L +N+ S+     FS  + L +++L  N LT IP         
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 276 TFWNLKDILYLNFSSNFLTG-PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYL 334
            F N   +  ++   N LT          L  LVGID S N+FS   PT   +   L+  
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541

Query: 335 FVG------YNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
            +        NR     P  I    SL  L + +N++   +   +     +  L++  N 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNP 598

Query: 389 LAGEIP 394
                 
Sbjct: 599 NISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  228 bits (583), Expect = 2e-67
 Identities = 60/412 (14%), Positives = 123/412 (29%), Gaps = 53/412 (12%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAG------ 55
              +  NL++L  + + +   +  +PT +  +  +++  V+ N                 
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 56  -VRLPNLEVLRMRSNNFC-GTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVT 113
                 ++++ +  NN     +   +    KL +LE   N   G +P  FG+   L  + 
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359

Query: 114 LYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM---- 169
           L  N +T   ++          + +  +  + N L  I       ++S  +         
Sbjct: 360 LAYNQITEIPANF-----CGFTEQVENLSFAHNKLKYIPNIFDAKSVS-VMSAIDFSYNE 413

Query: 170 ---PNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEG-- 224
               +      +        N+  I L  N+++       S    L  ++L  N L    
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 225 -----SIPNNICRLTELYELDLGSNKFSRSIPA--CFSNLASLRTLSLGSNELTSIPLTF 277
                    N      L  +DL  NK +  +      + L  L  + L  N  +  P   
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532

Query: 278 WNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVG 337
            N   +      +                    D   N      P  I     L  L +G
Sbjct: 533 LNSSTLKGFGIRNQ------------------RDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 338 YNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
            N ++  +   I    ++  L++ +N         +          L ++K 
Sbjct: 575 SNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (535), Expect = 1e-60
 Identities = 62/424 (14%), Positives = 123/424 (29%), Gaps = 52/424 (12%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            I            +    N +   +   V  ++ L+ F + N+                
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI------CEA 226

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
            E           T      N   L+ +E+ +      +P     L  +  + +  N   
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 121 S---STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
           S      D   L+     + +  I +  N L      TS+  +   L         + G 
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQLEG- 344

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNN--ICRLTE 235
                 +   L  + L  N++           ++++ LS A NKL+  IPN      ++ 
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403

Query: 236 LYELDLGSNKFS-------RSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLN 287
           +  +D   N+           +        ++ +++L +N+++  P   F     +  +N
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 288 FSSNFLTG-------PLPLEIENLKVLVGIDFSVNNFSGVIPT-TIGSLKGLQYLFVGYN 339
              N LT              +N  +L  ID   N  + +       +L  L  + + YN
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSF 399
                 P    +  +LK   + N                    +   N+   E P     
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQ------------------RDAQGNRTLREWPE--GI 562

Query: 400 GNFS 403
               
Sbjct: 563 TLCP 566

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (486), Expect = 1e-53
 Identities = 62/373 (16%), Positives = 124/373 (33%), Gaps = 43/373 (11%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGV--------IPTKVFNVSTLKVFEVSNNSLSGSLSS 52
           ++P  +  L  ++L+ ++ N+ +                    +++  +  N+L      
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 53  IAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKV 112
            +  ++  L +L    N   G +P F  +  KL+ L L  N  +    +  G    +  +
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382

Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGT------SVGNLSHSLEY 166
           +  +N L      +  +    +   ++ ID S N +  +          +      ++  
Sbjct: 383 SFAHNKLKY----IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSS 437

Query: 167 FYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG-------SIPITLSKLQKLQGLSLAD 219
             + N  +S    E  S  + L  I L GN L                    L  + L  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 220 NKLEGSIPNNI--CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNE-------L 270
           NKL   + ++     L  L  +DL  N FS   P    N ++L+   + +         L
Sbjct: 498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 271 TSIPLTFWNLKDILYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLK 329
              P        +  L   SN +   +  +I  N+ VL   D   N    +  + +    
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNISVL---DIKDNPNISIDLSYVCPYI 611

Query: 330 GLQYLFVGYNRLQ 342
                 + Y++ Q
Sbjct: 612 EAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  186 bits (473), Expect = 9e-52
 Identities = 53/372 (14%), Positives = 125/372 (33%), Gaps = 31/372 (8%)

Query: 57  RLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSG----FIPDTFGNLRNLNKV 112
               +  L +      G +P  I   ++L +L LG +        F P       +  + 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC 172
                +   +  D +     S+   L    ++ +P    +       ++         + 
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSD---LIKDCINSDPQQKSIK--KSSRITLKDTQIGQLSN 193

Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICR 232
           N++  + + +  LT L   Y+G +           +       +    +   +       
Sbjct: 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDN 247

Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP---------LTFWNLKDI 283
           L +L ++++ +      +P     L  ++ +++  N   S                 + I
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 284 LYLNFSSN-FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
             +    N   T P+   ++ +K L  ++   N   G +P   GS   L  L + YN++ 
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366

Query: 343 GSIPYSIGDLISLKSLNLSNNNLSGTIPVSLE--KLSYLEDLNLSFNKLAGEIPRGGSFG 400
                  G    +++L+ ++N L   IP   +   +S +  ++ S+N++        +F 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG--KNFD 423

Query: 401 NFSAESFEGNEL 412
                 F+G  +
Sbjct: 424 PLDPTPFKGINV 435

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (411), Expect = 3e-43
 Identities = 46/312 (14%), Positives = 102/312 (32%), Gaps = 24/312 (7%)

Query: 93  NSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGIL 152
           + +      +  +   +  ++L     +    D     ++     L  + L  +      
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-----AIGQLTELEVLALGSHGEKVNE 121

Query: 153 PGTSVGNLSH--SLEYFYMPNCNVSGGIPEEIS--NLTNLIIIYLGGNKLNGSIPITLSK 208
                  +S   S E       +      +     + ++LI   +  +    SI  +   
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 209 LQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268
             K   +    N +   +   + RLT+L +  +G++ F            +         
Sbjct: 182 TLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ--- 237

Query: 269 ELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNF--------SGV 320
              +  L + NLKD+  +   +      LP  ++ L  +  I+ + N             
Sbjct: 238 -YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 321 IPTTIGSLKGLQYLFVGYNRLQ-GSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYL 379
                   + +Q +++GYN L+   +  S+  +  L  L    N L G +P +      L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355

Query: 380 EDLNLSFNKLAG 391
             LNL++N++  
Sbjct: 356 ASLNLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  161 bits (410), Expect = 4e-43
 Identities = 47/289 (16%), Positives = 87/289 (30%), Gaps = 20/289 (6%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
                 G+   L  L L++N++  +          ++    ++N L    +      +  
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 61  LEVLRMRSNNF-------CGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVT 113
           +  +    N            +    F    +S + L +N  S F  + F     L+ + 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 114 LYNNYLTS--STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPN 171
           L  N LT     S  +   +  N   LT IDL  N L  +        L   L    +  
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP-YLVGIDLSY 522

Query: 172 CNVSGGIPEEISNLTNLIIIYLG------GNKLNGSIPITLSKLQKLQGLSLADNKLEGS 225
            + S   P +  N + L    +       GN+     P  ++    L  L +  N +   
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-K 580

Query: 226 IPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
           +   I     +  LD+  N       +            L  ++   I 
Sbjct: 581 VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  138 bits (349), Expect = 5e-35
 Identities = 34/260 (13%), Positives = 76/260 (29%), Gaps = 36/260 (13%)

Query: 150 GILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG----SIPIT 205
           G  PG S+ +    +    +     SG +P+ I  LT L ++ LG +          P  
Sbjct: 70  GAQPGVSLNSNGR-VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKG 128

Query: 206 LSKLQKLQGLSLADNKLEGSIPNNICRL--TELYELDLGSNKFSRSIPACFSNLASLRTL 263
           +S     +         + +  +   R   ++L +  + S+   +SI            +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

Query: 264 SLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPT 323
              SN +T +      L  +      ++        E    +                  
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS---------------- 232

Query: 324 TIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLN 383
                         Y +   +      +L  L  + + N      +P  L+ L  ++ +N
Sbjct: 233 -------------EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 384 LSFNKLAGEIPRGGSFGNFS 403
           ++ N+          +   +
Sbjct: 280 VACNRGISGEQLKDDWQALA 299

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 14/115 (12%), Positives = 30/115 (26%), Gaps = 7/115 (6%)

Query: 313 SVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG----T 368
            ++ +      ++ S   +  L +      G +P +IG L  L+ L L ++         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 369 IPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFS---AESFEGNELLCGSPNLR 420
            P  +      E                    +FS    +    +          
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  227 bits (581), Expect = 1e-66
 Identities = 87/441 (19%), Positives = 159/441 (36%), Gaps = 37/441 (8%)

Query: 8   NLRNLELLVLSHNKLVGVIPT--KVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
              ++  L LS+++L     T       + L + ++S N+L+  + + +   LP LE   
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFF 278

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDN---------SFSGFIPDTFGNLRNLNKVTLYN 116
           +  NN      H +     +  L L  +         S       +F  L+ L  + + +
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 117 NYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPL--DGILPGTSVGNLSHSLEYFYMPNCNV 174
           N +    S+       +    L Y+ LS++      +   T V      L    +    +
Sbjct: 339 NDIPGIKSN-----MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 175 SGGIPEEISNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNICRL 233
           S    +  S L +L ++ LG N++   +       L+ +  + L+ NK      N+   +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 234 TELYELDLGSNKFSR--SIPACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSS 290
             L  L L         S P+ F  L +L  L L +N + +I       L+ +  L+   
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 291 NFLT--------GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
           N L         G     ++ L  L  ++   N F  +       L  L+ + +G N L 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 343 GSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEK-LSYLEDLNLSFNKLAGEIPRGGSFGN 401
                   + +SLKSLNL  N ++             L +L++ FN           F N
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 402 FSAES-----FEGNELLCGSP 417
           +  E+        +  LC +P
Sbjct: 634 WINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  225 bits (575), Expect = 6e-66
 Identities = 88/421 (20%), Positives = 150/421 (35%), Gaps = 24/421 (5%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
                    NL  L L  N +  +          L   ++S+N LS S      V+L NL
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENL 147

Query: 62  EVLRMRSNNFCGTIPHFI--FNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL 119
           + L + +N         +  F  S L  LEL  N    F P  F  +  L  + L N  L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
             S ++   L       ++  + LS++ L      T +G    +L    +   N++    
Sbjct: 208 GPSLTEKLCLEL--ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNN---------I 230
           +  + L  L   +L  N +      +L  L  ++ L+L  +  + SI             
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325

Query: 231 CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL---TFWNL--KDILY 285
             L  L  L++  N         F+ L +L+ LSL ++  +   L   TF +L    +  
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 286 LNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP-TTIGSLKGLQYLFVGYNRLQGS 344
           LN + N ++         L  L  +D  +N     +       L+ +  +++ YN+    
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 345 IPYSIGDLISLKSLNLSNNNLSG--TIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNF 402
              S   + SL+ L L    L    + P   + L  L  L+LS N +A            
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND--DMLEGL 503

Query: 403 S 403
            
Sbjct: 504 E 504

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  223 bits (571), Expect = 3e-65
 Identities = 87/422 (20%), Positives = 162/422 (38%), Gaps = 28/422 (6%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           ++P ++    N+ +L L+HN+L  +        S L   +V  N++S  L      +LP 
Sbjct: 18  QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPM 74

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L+VL ++ N             + L+ L L  NS      + F   +NL  + L +N L+
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
           S+      L +    + L  + LS+N +  +         + SL+   + +  +    P 
Sbjct: 135 STK-----LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLS---KLQKLQGLSLADNKLEGSIPNNI--CRLTE 235
               +  L  ++L   +L  S+   L        ++ LSL++++L  +        + T 
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 236 LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLT 294
           L  LDL  N  +      F+ L  L    L  N +  +   +   L ++ YLN   +F  
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 295 GPL---------PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI 345
             +             + LK L  ++   N+  G+       L  L+YL +  +      
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 346 PYSIG----DLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGN 401
             +          L  LNL+ N +S     +   L +LE L+L  N++  E+  G  +  
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT-GQEWRG 428

Query: 402 FS 403
             
Sbjct: 429 LE 430

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  204 bits (521), Expect = 3e-58
 Identities = 90/414 (21%), Positives = 154/414 (37%), Gaps = 34/414 (8%)

Query: 11  NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN 70
           + E+   SH KL   +P  +   + + V  +++N L   L +    R   L  L +  N 
Sbjct: 5   SHEVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNT 60

Query: 71  FCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLS 130
                P        L +L L  N  S     TF    NL ++ L +N +    ++     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN----- 115

Query: 131 SLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEIS--NLTNL 188
                K L  +DLS N L     G +   L  +L+   + N  +     EE+     ++L
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLG-TQVQLE-NLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC---RLTELYELDLGSNK 245
             + L  N++    P     + +L GL L + +L  S+   +C     T +  L L +++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 246 FSRSIPACFSNLA--SLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIE 302
            S +    F  L   +L  L L  N L  +   +F  L  + Y     N +       + 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 303 NLKVL---------VGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLI 353
            L  +              S+ +   +   +   LK L++L +  N + G        LI
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 354 SLKSLNLSNNNLSGTIPVSLE----KLSYLEDLNLSFNKLAGEIPRGGSFGNFS 403
           +LK L+LSN+  S     +        S L  LNL+ NK++       +F    
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES--DAFSWLG 405

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 5e-18
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 13/161 (8%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVR--- 57
             P     LRNL +L LS+N +  +    +  +  L++ ++ +N+L+  L   A      
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-RLWKHANPGGPI 529

Query: 58  -----LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKV 112
                L +L +L + SN F         +  +L +++LG N+ +      F N  +L  +
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP 153
            L  N +TS    + F  +  N   LT +D+  NP D    
Sbjct: 590 NLQKNLITSVEKKV-FGPAFRN---LTELDMRFNPFDCTCE 626

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  222 bits (567), Expect = 1e-63
 Identities = 73/453 (16%), Positives = 141/453 (31%), Gaps = 57/453 (12%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            I   I  L  L+++  +++            V                  S +   L +
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIA----VDWEDANSDYAKQYENEELSWSN--LKD 492

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF---------IPDTFGNLRNLNK 111
           L  + + +      +P F+++  +L  L +  N              + D       +  
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 112 VTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPN 171
             +  N L    +     +SL     L  +D   N +  +    + G     L    +  
Sbjct: 553 FYMGYNNLEEFPAS----ASLQKMVKLGLLDCVHNKVRHL---EAFGTNV-KLTDLKLDY 604

Query: 172 CNVSGGIPEEI-SNLTNLIIIYLGGNKLNGSIP--ITLSKLQKLQGLSLADNKLEGSIPN 228
             +   IPE+  +    +  +    NKL   IP       +  +  +  + NK+     N
Sbjct: 605 NQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 229 -----NICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP--------L 275
                +  +      + L  N+  +     F+  + + T+ L +N +TSIP         
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 276 TFWNLKDILYLNFSSNFLTG-PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYL 334
            + N   +  ++   N LT          L  L  +D S N FS   PT   +   L+  
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781

Query: 335 ------FVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
                     NR+    P  I    SL  L + +N++   +   L     L  L+++ N 
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNP 838

Query: 389 LAGEIPRGGSFGNFSAE----SFEGNELLCGSP 417
               I          A      ++  + + G  
Sbjct: 839 NI-SIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  220 bits (563), Expect = 4e-63
 Identities = 72/433 (16%), Positives = 128/433 (29%), Gaps = 47/433 (10%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            +P  IG L  L++L    +              T  + E   + +      +       
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSG------FIPDTFGNLRNLNKVTL 114
           L +  +  +         +    K S + L D           FI      L  L  +  
Sbjct: 398 LNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455

Query: 115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV 174
            N+  T            +        +             S  NL   L    + NC  
Sbjct: 456 ANSPFT----------YDNIAVDWEDANSDYAKQYENEEL-SWSNLK-DLTDVELYNCPN 503

Query: 175 SGGIPEEISNLTNLIIIYLGGNKLNG---------SIPITLSKLQKLQGLSLADNKLEG- 224
              +P+ + +L  L  + +  N+             +        K+Q   +  N LE  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
               ++ ++ +L  LD   NK    + A F     L  L L  N++  IP         +
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 284 LYLNFSSNFLTG-PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKG-----LQYLFVG 337
             L FS N L   P     +++ V+  +DFS N           S+          + + 
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 338 YNRLQGSIPYSIGDLISLKSLNLSNNNLS-------GTIPVSLEKLSYLEDLNLSFNKLA 390
           YN +Q            + ++ LSNN ++            + +    L  ++L FNKL 
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 391 GEIPRGGSFGNFS 403
             +          
Sbjct: 742 -SLSDDFRATTLP 753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  205 bits (523), Expect = 1e-57
 Identities = 60/406 (14%), Positives = 133/406 (32%), Gaps = 29/406 (7%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
              ++ N   +  L L+     G +P  +  ++ LKV     +S + S        L   
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
                +          F+    +L+L +L  ++ +         ++  ++++L +  + +
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGN 432

Query: 122 STSDLNFL-SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
            T+ + F+  ++     L  I  +++P           + +                   
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD-------YAKQYENEEL 485

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEG---------SIPNNIC 231
             SNL +L  + L        +P  L  L +LQ L++A N+             + ++  
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 232 RLTELYELDLGSNKFSR-SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSS 290
              ++    +G N        A    +  L  L    N++  +   F     +  L    
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY 604

Query: 291 NFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTT-IGSLKGLQYLFVGYNRLQG----- 343
           N +   +P +       + G+ FS N    +       S+  +  +   YN++       
Sbjct: 605 NQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 344 SIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
           S        I+  ++ LS N +           S +  + LS N +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  172 bits (437), Expect = 4e-46
 Identities = 62/367 (16%), Positives = 117/367 (31%), Gaps = 45/367 (12%)

Query: 69  NNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNF 128
           + +       + N  +++ L L      G +PD  G L  L  ++   +  T S      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 129 LS--------------------SLSNCKTLTYIDLSDNPLDGILPGTSVGNLSH-SLEYF 167
                                  L   + L   DL  + ++       +   S  SL+  
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 168 YMPNC-NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSI 226
            + N  N    I + I  LT L IIY   +           +       +    K   + 
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENE 483

Query: 227 PNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS----------IPLT 276
             +   L +L +++L +      +P    +L  L++L++  N   S          +   
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 277 FWNLKDILYLNFSSNFLTG-PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLF 335
                 I       N L   P    ++ +  L  +D   N          G+   L  L 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLK 601

Query: 336 VGYNRLQGSIPYSIG-DLISLKSLNLSNNNLSGTIP--VSLEKLSYLEDLNLSFNKLAGE 392
           + YN+++  IP         ++ L  S+N L   IP   + + +  +  ++ S+NK+  E
Sbjct: 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 393 IPRGGSF 399
                  
Sbjct: 660 GRNISCS 666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (312), Expect = 4e-30
 Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 15/249 (6%)

Query: 172 CNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC 231
                    ++ N   +  + L G    G +P  + +L +L+ LS   +    S      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 232 RLTELYELDLGSNKFSRSIPACF-SNLASLRTLSLGSNELTSIP-------LTFWNLKDI 283
                   +   ++        F      L    L  + +   P        +  +LKD 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD- 427

Query: 284 LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
             +   +N +T  +   I+ L  L  I F+ + F+             +     Y +   
Sbjct: 428 TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYE 481

Query: 344 SIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFS 403
           +   S  +L  L  + L N      +P  L  L  L+ LN++ N+          +   +
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 404 AESFEGNEL 412
            +   G ++
Sbjct: 542 DDEDTGPKI 550

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 8e-10
 Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 2/193 (1%)

Query: 232 RLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSN 291
           +LT+   + +   + +  I    +  A    L   +    S  +           N   +
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELD 309

Query: 292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351
                  ++++N   + G+  +     G +P  IG L  L+ L  G +    S      +
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 352 LISLKSLNLSNNNLSGTI-PVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGN 410
            ++        + +      + L+    L   +L  + +    P        S  S +  
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDT 428

Query: 411 ELLCGSPNLRVPP 423
           ++   +  +    
Sbjct: 429 QIGNLTNRITFIS 441

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (520), Expect = 1e-58
 Identities = 80/410 (19%), Positives = 145/410 (35%), Gaps = 30/410 (7%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEV----SNNSLSGSLSSIAGV 56
           ++P    NL NLE L LS NK+  +  T +  +  + +  +    S N ++         
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA--F 197

Query: 57  RLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSG------FIPDTFGNLRNL 109
           +   L  L +R+N     +        + L +  L    F        F       L NL
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 110 NKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169
                   YL     D+      +    ++   L    ++ +   +     +   ++  +
Sbjct: 258 TIEEFRLAYLDYYLDDII--DLFNCLTNVSSFSLVSVTIERVKDFS----YNFGWQHLEL 311

Query: 170 PNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKL--EGSIP 227
            NC        ++ +L  L           G    +   L  L+ L L+ N L  +G   
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 228 NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI--PLTFWNLKDILY 285
            +    T L  LDL  N    ++ + F  L  L  L    + L  +     F +L++++Y
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 286 LNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVI-PTTIGSLKGLQYLFVGYNRLQGS 344
           L+ S              L  L  +  + N+F     P     L+ L +L +   +L+  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 345 IPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
            P +   L SL+ LN+S+NN         + L+ L+ L+ S N +     
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (520), Expect = 1e-58
 Identities = 86/433 (19%), Positives = 151/433 (34%), Gaps = 37/433 (8%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
                  L +L+ LV     L  +    + ++ TLK   V++N +           L NL
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSL----LELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
           E L + SN         +    ++ L    L+L  N  +   P  F  +  L+K+TL NN
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYID---LSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV 174
           + + +      +  L+  +    +     ++  L+        G  + ++E F +   + 
Sbjct: 211 FDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 175 SGG-IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLE---------- 223
               I +  + LTN+    L    +        S     Q L L + K            
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 224 ---------GSIPNNICRLTELYELDLGSNKFSRS--IPACFSNLASLRTLSLGSNELTS 272
                    G    +   L  L  LDL  N  S             SL+ L L  N + +
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 273 IPLTFWNLKDILYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGL 331
           +   F  L+ + +L+F  + L       +  +L+ L+ +D S  +           L  L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 332 QYLFVGYNRLQGSI-PYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLA 390
           + L +  N  Q +  P    +L +L  L+LS   L    P +   LS L+ LN+S N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 391 GEIPRGGSFGNFS 403
                   +   +
Sbjct: 508 SLDT--FPYKCLN 518

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  191 bits (487), Expect = 6e-54
 Identities = 79/431 (18%), Positives = 142/431 (32%), Gaps = 47/431 (10%)

Query: 2   IPHEIGNLRNLEL----LVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVR 57
              ++  L  + L    L LS N +  + P   F    L    + NN  S ++       
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 58  LPNLEVLRMRSNNFCGT------IPHFIFNASKLSLLELGDNSFSGF---IPDTFGNLRN 108
           L  LEV R+    F             +     L++ E        +   I D F  L N
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS------- 161
           ++  +L +  +         +   S      +++L +                       
Sbjct: 284 VSSFSLVSVTIER-------VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 162 ----------HSLEYFYMPN--CNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKL 209
                      SLE+  +     +  G   +     T+L  + L  N +   +      L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 210 QKLQGLSLADNKLEGSIPNNI-CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268
           ++L+ L    + L+     ++   L  L  LD+       +    F+ L+SL  L +  N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 269 ELTS--IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIG 326
                 +P  F  L+++ +L+ S   L    P    +L  L  ++ S NNF  +      
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 327 SLKGLQYLFVGYNRLQGSIPYSIGDLI-SLKSLNLSNNNLSGTIPVS--LEKLSYLEDLN 383
            L  LQ L    N +  S    +     SL  LNL+ N+ + T      L+ +     L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 384 LSFNKLAGEIP 394
           +   ++    P
Sbjct: 576 VEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  185 bits (472), Expect = 7e-52
 Identities = 84/442 (19%), Positives = 140/442 (31%), Gaps = 56/442 (12%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           +IP  +    + + L LS N L  +     F+   L+V ++S   +           L +
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSH 77

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L  L +  N             S L  L   + + +       G+L+ L ++ + +N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSH------------------ 162
           S           SN   L ++DLS N +  I     +  L                    
Sbjct: 138 S----FKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 163 --------SLEYFYMPNCNVSGGIPEE-ISNLTNLIIIYLGGNKLNGSIPI------TLS 207
                    L    + N   S  + +  I  L  L +  L   +      +       L 
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 208 KLQKLQGLSLADNKLEGS---IPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS 264
            L  L         L+     I +    LT +    L S    R     FS     + L 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLE 310

Query: 265 LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVN--NFSGVIP 322
           L + +    P     LK +  L F+SN           +L  L  +D S N  +F G   
Sbjct: 311 LVNCKFGQFP--TLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCS 366

Query: 323 TTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS-LEKLSYLED 381
            +      L+YL + +N +   +  +   L  L+ L+  ++NL      S    L  L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 382 LNLSFNKLAGEIPRGGSFGNFS 403
           L++S           G F   S
Sbjct: 426 LDISHTHTRVAFN--GIFNGLS 445

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  162 bits (411), Expect = 2e-43
 Identities = 75/390 (19%), Positives = 133/390 (34%), Gaps = 57/390 (14%)

Query: 44  NSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTF 103
             +  +   I      + + L +  N       +  F+  +L +L+L            +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 104 GNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS 163
            +L +L+ + L  N + S         + S   +L  +   +  L  +     +G+L  +
Sbjct: 73  QSLSHLSTLILTGNPIQSLALG-----AFSGLSSLQKLVAVETNLASLENF-PIGHLK-T 125

Query: 164 LEYFYMPNCNVSGG-IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQ----GLSLA 218
           L+   + +  +    +PE  SNLTNL  + L  NK+       L  L ++      L L+
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 219 DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTS----- 272
            N +   I     +   L++L L +N  S ++   C   LA L    L   E  +     
Sbjct: 186 LNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 273 -----------------------------IPLTFWNLKDILYLNFSSNFLTGPLPLEIEN 303
                                        I   F  L ++   +  S  +          
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SY 302

Query: 304 LKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNN 363
                 ++     F       + SLK L      +   +G   +S  DL SL+ L+LS N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 364 NLS--GTIPVSLEKLSYLEDLNLSFNKLAG 391
            LS  G    S    + L+ L+LSFN +  
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.0 bits (229), Expect = 8e-20
 Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 4/180 (2%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
             +LRNL  L +SH             +S+L+V +++ NS   +        L NL  L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
           +         P    + S L +L +  N+F       +  L +L  +    N++   TS 
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM--TSK 534

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
              L       +L +++L+ N         S            +    +    P +   +
Sbjct: 535 KQELQHF--PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 2/109 (1%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
             P    +L +L++L +SHN    +       +++L+V + S N +  S          +
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 544

Query: 61  LEVLRMRSNNFCGTIPH--FIFNASKLSLLELGDNSFSGFIPDTFGNLR 107
           L  L +  N+F  T  H  F+        L +         P     + 
Sbjct: 545 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  200 bits (511), Expect = 3e-57
 Identities = 77/410 (18%), Positives = 142/410 (34%), Gaps = 17/410 (4%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           EIP  +    + E L  S N L  +  T    +  L   +++   +   +          
Sbjct: 26  EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHR 82

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L+ L + +N         +     L  L       S        N + L  + L +N+++
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
           S       L      + L  +D  +N +  +     + +L  +       N N   GI  
Sbjct: 143 SIK-----LPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEP 196

Query: 181 EISNLTNLIIIYLGGNKLNGSIP--ITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY- 237
              +      +  GG +    I   +  S +Q L   +  D   E   P     L E+  
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 238 -ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296
             ++L  + F       F   + L+ L L +  L+ +P     L  +  L  S+N     
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPT-TIGSLKGLQYLFVGYNRLQGS--IPYSIGDLI 353
             +   N   L  +    N     + T  + +L+ L+ L + ++ ++ S      + +L 
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 354 SLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFS 403
            L+SLNLS N        + ++   LE L+L+F +L         F N  
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-KDAQSPFQNLH 425

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  187 bits (478), Expect = 1e-52
 Identities = 78/428 (18%), Positives = 148/428 (34%), Gaps = 26/428 (6%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
              +      L++L   +N +  +    + ++       ++ N    +            
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 62  EVLRMRSNNFCGTIPHFIFNAS--KLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY--NN 117
           + L          I   + N++   L L    D       P  F  L  ++  ++    +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
           Y  + +S+     +      L  +DL+   L  +  G  +  LS +L+   +        
Sbjct: 265 YFFNISSN-----TFHCFSGLQELDLTATHLSELPSG--LVGLS-TLKKLVLSANKFENL 316

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSI-PITLSKLQKLQGLSLADNKLEGSIPNN--ICRLT 234
                SN  +L  + + GN     +    L  L+ L+ L L+ + +E S   N  +  L+
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 235 ELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNF 292
            L  L+L  N+        F     L  L L    L        F NL  +  LN S + 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 293 LTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKG---LQYLFVGYNRLQGSIPYSI 349
           L        + L  L  ++   N+F         SL+    L+ L + +  L     ++ 
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 350 GDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAES--- 406
             L  +  ++LS+N L+ +   +L  L  +  LNL+ N ++  +P        S +    
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILP--SLLPILSQQRTIN 553

Query: 407 FEGNELLC 414
              N L C
Sbjct: 554 LRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  174 bits (442), Expect = 1e-47
 Identities = 75/378 (19%), Positives = 141/378 (37%), Gaps = 18/378 (4%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFN--VSTLKVFEVSNNSLSG-SLSSIAGVR 57
            I     +    + L     + + VI   + N  + +L +    +      S +   G+ 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 58  LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
             ++E + ++ + F     +     S L  L+L     S  +P     L  L K+ L  N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSAN 311

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN--VS 175
              +         S SN  +LT++ +  N     L    + NL  +L    + + +   S
Sbjct: 312 KFENLCQ-----ISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETS 365

Query: 176 GGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLT 234
                ++ NL++L  + L  N+          +  +L+ L LA  +L+     +    L 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 235 ELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL----TFWNLKDILYLNFSS 290
            L  L+L  +    S    F  L +L+ L+L  N      +    +   L  +  L  S 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 291 NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG 350
             L+        +LK++  +D S N  +      +  LKG+ YL +  N +   +P  + 
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544

Query: 351 DLISLKSLNLSNNNLSGT 368
            L   +++NL  N L  T
Sbjct: 545 ILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  171 bits (436), Expect = 7e-47
 Identities = 67/361 (18%), Positives = 121/361 (33%), Gaps = 17/361 (4%)

Query: 49  SLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRN 108
            L+ I G    + E L    N               L+ L+L          DTF +   
Sbjct: 23  GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82

Query: 109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFY 168
           L+ + L  N L           +LS  K L ++      +  I     + N   +LE  Y
Sbjct: 83  LDTLVLTANPLIFMAET-----ALSGPKALKHLFFIQTGISSI-DFIPLHNQK-TLESLY 135

Query: 169 MPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQG--LSLADNKLEGSI 226
           + + ++S     +      L ++    N ++      +S LQ+     L+L  N +   I
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GI 194

Query: 227 PNNICRLTELYELDLGSNKFSRSIPA--CFSNLASLRTLSLGSNELTSI-PLTFWNLKD- 282
                       L+ G  +    I      S + SL   +    +   I P  F  L + 
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 283 -ILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
            +  +N   ++              L  +D +  + S  +P+ +  L  L+ L +  N+ 
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKF 313

Query: 342 QGSIPYSIGDLISLKSLNLSNNNLSGTI-PVSLEKLSYLEDLNLSFNKLAGEIPRGGSFG 400
           +     S  +  SL  L++  N     +    LE L  L +L+LS + +           
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 401 N 401
           N
Sbjct: 374 N 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (412), Expect = 2e-43
 Identities = 75/361 (20%), Positives = 136/361 (37%), Gaps = 16/361 (4%)

Query: 11  NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN 70
           ++E + L  +    +        S L+  +++   LS   S + G  L  L+ L + +N 
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG--LSTLKKLVLSANK 312

Query: 71  FCGTIPHFIFNASKLSLLELGDNSFSGFI-PDTFGNLRNLNKVTLYNNYLTSSTSDLNFL 129
           F         N   L+ L +  N+    +      NL NL ++ L ++ + +S      L
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI-SNLTNL 188
            +LS+   L  ++LS N    +            LE   +    +     +    NL  L
Sbjct: 373 RNLSH---LQSLNLSYNEPLSLKTEAFKE--CPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSI---PNNICRLTELYELDLGSNK 245
            ++ L  + L+ S       L  LQ L+L  N          N++  L  L  L L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLK 305
            S      F++L  +  + L  N LTS  +   +    +YLN +SN ++  LP  +  L 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILS 547

Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNL 365
               I+   N        T  ++  L++      +L+ +      +   L+ + LS+  L
Sbjct: 548 QQRTINLRQNPLDC----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

Query: 366 S 366
           S
Sbjct: 604 S 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  131 bits (331), Expect = 1e-32
 Identities = 52/269 (19%), Positives = 88/269 (32%), Gaps = 13/269 (4%)

Query: 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG 200
            +  +  L+ I      G L +S E        +        S L NL  + L   ++  
Sbjct: 17  YNCENLGLNEI-----PGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 201 SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
               T     +L  L L  N L       +     L  L       S        N  +L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 261 RTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVN-NFS 318
            +L LGSN ++SI L   +  + +  L+F +N +      ++ +L+    +  ++N N  
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 319 GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG--DLISLKSLNLSNNNLSGTIPVSLEKL 376
             I          Q L  G  +    I   +    + SL      + +     P   E L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 377 S--YLEDLNLSFNKLAGEIPRGGSFGNFS 403
               +E +NL  +          +F  FS
Sbjct: 252 CEMSVESINLQKHYFFNISS--NTFHCFS 278

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (251), Expect = 2e-22
 Identities = 48/274 (17%), Positives = 92/274 (33%), Gaps = 41/274 (14%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
              ++ NL +L+ L LS+N+ + +          L++ +++   L    +      L  L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFI---PDTFGNLRNLNKVTLYNNY 118
           +VL +  +    +          L  L L  N F        ++   L  L  + L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           L+S         + ++ K + ++DLS N L                              
Sbjct: 488 LSSIDQH-----AFTSLKMMNHVDLSHNRLTSS--------------------------S 516

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238
            E +S+L  +  + L  N ++  +P  L  L + + ++L  N L+ +     C      E
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT-----CSNIYFLE 570

Query: 239 -LDLGSNKFSRSIPACFSNLASLRTLSLGSNELT 271
                  K   +      N   LR + L    L+
Sbjct: 571 WYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  173 bits (440), Expect = 2e-49
 Identities = 82/384 (21%), Positives = 154/384 (40%), Gaps = 56/384 (14%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
             +L      VL    +  V+  +   + ++    V+   ++ S+  I    L NLE L 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA-SIQGIEY--LTNLEYLN 72

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
           +  N      P  + N  KL+ L +G N  +        NL NL ++ L  + ++     
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD---- 124

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
              +S L+N   +  ++L  N                                   +SN+
Sbjct: 125 ---ISPLANLTKMYSLNLGANHN---------------------------LSDLSPLSNM 154

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNK 245
           T L  + +  +K+    PI  + L  L  LSL  N++E   P  +  LT L+      N+
Sbjct: 155 TGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210

Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLK 305
            +   P   +N+  L +L +G+N++T +     NL  + +L   +N ++    ++  +L 
Sbjct: 211 ITDITP--VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINAVK--DLT 265

Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNL 365
            L  ++   N  S +    + +L  L  LF+  N+L       IG L +L +L LS N++
Sbjct: 266 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 366 SGTIPVSLEKLSYLEDLNLSFNKL 389
           +   P  L  LS ++  + +   +
Sbjct: 324 TDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  153 bits (390), Expect = 2e-42
 Identities = 75/315 (23%), Positives = 133/315 (42%), Gaps = 29/315 (9%)

Query: 81  NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY 140
           + ++     L   S +  +      L ++ K+ +    + S       +  +     L Y
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS-------IQGIEYLTNLEY 70

Query: 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG 200
           ++L+ N +  I P   + NL   L   Y+    ++      + NLTNL  +YL  + ++ 
Sbjct: 71  LNLNGNQITDISP---LSNLV-KLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD 124

Query: 201 SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
             P  L+ L K+  L+L  N    S  + +  +T L  L +  +K     P   +NL  L
Sbjct: 125 ISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179

Query: 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV 320
            +LSL  N++  I     +L  + Y     N +T   P+   N+  L  +    N  + +
Sbjct: 180 YSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITPVA--NMTRLNSLKIGNNKITDL 236

Query: 321 IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLE 380
            P  + +L  L +L +G N++   I  ++ DL  LK LN+ +N +S      L  LS L 
Sbjct: 237 SP--LANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQISDISV--LNNLSQLN 290

Query: 381 DLNLSFNKLAGEIPR 395
            L L+ N+L  E   
Sbjct: 291 SLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  149 bits (379), Expect = 8e-41
 Identities = 79/362 (21%), Positives = 135/362 (37%), Gaps = 76/362 (20%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
            I  L NLE L L+ N++  + P                              L  L  L
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISPLS---------------------------NLVKLTNL 93

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
            + +N    T    + N + L  L L +++ S   P    NL  +  + L  N+  S   
Sbjct: 94  YIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-- 147

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
               LS LSN   L Y+ ++++ +  +                              I+N
Sbjct: 148 ----LSPLSNMTGLNYLTVTESKVKDV----------------------------TPIAN 175

Query: 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSN 244
           LT+L  + L  N++    P  L+ L  L   +   N++    P  +  +T L  L +G+N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231

Query: 245 KFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENL 304
           K +   P   +NL+ L  L +G+N+++ I     +L  +  LN  SN ++      + NL
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISV--LNNL 286

Query: 305 KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNN 364
             L  +  + N         IG L  L  LF+  N +    P  +  L  + S + +N  
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 365 LS 366
           + 
Sbjct: 345 IK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (358), Expect = 7e-38
 Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 20/271 (7%)

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           L +  + +N +   ++        L    +  ++       L  S+    +    V+   
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT---QEELE-SITKLVVAGEKVAS-- 58

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238
            + I  LTNL  + L GN++    P  LS L KL  L +  NK+  +  + +  LT L E
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLP 298
           L L  +  S   P   +NL  + +L+LG+N   S      N+  + YL  + + +    P
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP 172

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
             I NL  L  +  + N    + P  + SL  L Y     N++    P  + ++  L SL
Sbjct: 173 --IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
            + NN ++   P  L  LS L  L +  N++
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (333), Expect = 3e-34
 Identities = 55/271 (20%), Positives = 110/271 (40%), Gaps = 25/271 (9%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
                + NL NL  L L+ + +  + P  + N++ +    +  N     LS ++   +  
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSN--MTG 156

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L  L +  +      P  I N + L  L L  N      P    +L +L+  T Y N +T
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
                   ++ ++N   L  + + +N +  +   + + NLS  L +  +    +S     
Sbjct: 213 D-------ITPVANMTRLNSLKIGNNKITDL---SPLANLS-QLTWLEIGTNQISD--IN 259

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
            + +LT L ++ +G N+++    +  + L +L  L L +N+L       I  LT L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 241 LGSNKFSRSIPACFSNLASLRTLSLGSNELT 271
           L  N  +   P   ++L+ + +    +  + 
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (295), Expect = 3e-29
 Identities = 50/244 (20%), Positives = 100/244 (40%), Gaps = 23/244 (9%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
            + NL  +  L L  N  +  +   + N++ L    V+ + +   ++ IA   L +L  L
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTPIAN--LTDLYSL 182

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
            +  N      P  + + + L       N  +   P    N+  LN + + NN +T    
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--- 235

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
               LS L+N   LT++++  N +  I    +V +L+  L+   + +  +S      ++N
Sbjct: 236 ----LSPLANLSQLTWLEIGTNQISDI---NAVKDLT-KLKMLNVGSNQISD--ISVLNN 285

Query: 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSN 244
           L+ L  ++L  N+L       +  L  L  L L+ N +    P  +  L+++   D  + 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

Query: 245 KFSR 248
              +
Sbjct: 344 VIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.9 bits (224), Expect = 9e-20
 Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 12/183 (6%)

Query: 212 LQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT 271
              L+     +    P     L E     L     +  +      L S+  L +   ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 272 SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGL 331
           SI      L ++ YLN + N +T   PL   NL  L  +    N  +    + + +L  L
Sbjct: 58  SIQ-GIEYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKIT--DISALQNLTNL 112

Query: 332 QYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG 391
           + L++  + +    P  + +L  + SLNL  N+    +   L  ++ L  L ++ +K+  
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD 169

Query: 392 EIP 394
             P
Sbjct: 170 VTP 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (453), Expect = 4e-49
 Identities = 76/420 (18%), Positives = 130/420 (30%), Gaps = 37/420 (8%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGV--RL 58
           ++P    NL NL  + LS+N +  +    +  +       +S +     +  I     + 
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 59  PNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSG------FIPDTFGNLRNLNK 111
             L  L +R N     I        + L +  L    F        F P     L ++  
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 112 VTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSH--------- 162
                 Y    + D+     L+N   ++ + L+   +  +                    
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLAN---VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320

Query: 163 --------SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQ--KL 212
                    L+   +     S  I  +   L +L  + L  N L+ S   + S L    L
Sbjct: 321 QFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELT 271
           + L L+ N     +  N   L EL  LD   +   R      F +L  L  L +      
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 272 SIPL-TFWNLKDILYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLK 329
                 F  L  +  L  + N         +  N   L  +D S      +      +L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 330 GLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
            LQ L + +N L          L SL +L+ S N +  +  +       L   NL+ N +
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  171 bits (435), Expect = 1e-46
 Identities = 84/415 (20%), Positives = 144/415 (34%), Gaps = 31/415 (7%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           ++P +I    + + + LS N L  +      N S L+  ++S   +  ++   A   L +
Sbjct: 25  KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHH 81

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L  L +  N      P      + L  L   +   +       G L  L K+ + +N++ 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGT--SVGNLSHSLEYFYMPNCNVSGGI 178
           S        +  SN   L ++DLS N +  I       +           M    +   I
Sbjct: 142 S----CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FI 196

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIP-ITLSKLQKLQGLSLADNKLEG---------SIPN 228
            ++      L  + L GN  + +I    L  L  L    L   + +          SI  
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 229 NICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNF 288
            +C +T   E  L            F  LA++  +SL    +  +            L+ 
Sbjct: 257 GLCDVTID-EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSI 314

Query: 289 SSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
               L     L++  LK L     ++N  S  I     +L  L YL +  N L  S   S
Sbjct: 315 IRCQLKQFPTLDLPFLKSL---TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 349 IGDL--ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGN 401
             DL   SL+ L+LS N     +  +   L  L+ L+   + L   +    +F +
Sbjct: 370 YSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR-VTEFSAFLS 422

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (431), Expect = 3e-46
 Identities = 81/428 (18%), Positives = 140/428 (32%), Gaps = 41/428 (9%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
             +   N   L+ L LS  ++  +       +  L    ++ N +  S S  +   L +L
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSL 106

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLT 120
           E L              I     L  L +  N      +P  F NL NL  V L  NY+ 
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 121 S-STSDLNFLSSLS---------------------NCKTLTYIDLSDNPLDGILPGTSVG 158
           + + +DL FL                             L  + L  N     +  T + 
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 159 NLSHS-----LEYFYMPNCNVSGGIPEEISNLTNLII--IYLGGNKLNGSIPITLSKLQK 211
           NL+       +   +    N+    P  +  L ++ I    L          +    L  
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 212 LQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT 271
           +  +SLA   +      ++ +  +   L +   +     P    +L  L++L+L  N+  
Sbjct: 287 VSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFP--TLDLPFLKSLTLTMNKG- 340

Query: 272 SIPLTFWNLKDILYLNFSSNFLT--GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLK 329
           SI      L  + YL+ S N L+  G           L  +D S N    ++      L+
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLE 399

Query: 330 GLQYLFVGYNRLQGSIPYS-IGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
            LQ+L   ++ L+    +S    L  L  L++S  N           L+ L  L ++ N 
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 389 LAGEIPRG 396
                   
Sbjct: 460 FKDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  156 bits (396), Expect = 2e-41
 Identities = 67/375 (17%), Positives = 123/375 (32%), Gaps = 47/375 (12%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVF-EVSNNSLSGSLSSIAGVR--- 57
           +   + NL  L +  L   +       ++F  S ++   +V+ +    + ++        
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 58  ---LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL 114
              L N+  + +   +        +    K   L +       F      +L  L  +TL
Sbjct: 281 FHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTL 335

Query: 115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV 174
             N  + S              +L+Y+DLS N L      +     ++SL +  + + N 
Sbjct: 336 TMNKGSIS-------FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL-SFNG 387

Query: 175 SGGIPEEISNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNICRL 233
           +  +      L  L  +    + L           L+KL  L ++    +         L
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 234 TELYELDLGSNKFSRSIPAC-FSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSN 291
           T L  L +  N F  +  +  F+N  +L  L L   +L  I    F  L  +  LN S N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351
                                   N   +  +    L  L  L   +NR++ S       
Sbjct: 508 ------------------------NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 352 LISLKSLNLSNNNLS 366
             SL   NL+NN+++
Sbjct: 544 PKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  130 bits (329), Expect = 2e-32
 Identities = 57/301 (18%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 3   PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLE 62
             +   L N+  + L+   +  +    V      +   +    L         + LP L+
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLK----QFPTLDLPFLK 331

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNL--RNLNKVTLYNNYLT 120
            L +  N   G+I         LS L+L  N+ S     ++ +L   +L  + L  N   
Sbjct: 332 SLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 121 SSTSDLNFLSSL-------------------SNCKTLTYIDLSDNPLDGILPGTSVGNLS 161
             +++   L  L                    + + L Y+D+S         G     L+
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLT 448

Query: 162 HSLEYFYMPNCNVSGGIPEEI-SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADN 220
            SL    M   +        + +N TNL  + L   +L          L +LQ L+++ N
Sbjct: 449 -SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 221 KLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNL 280
            L     ++  +L  L  LD   N+   S         SL   +L +N +  I      L
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFL 567

Query: 281 K 281
           +
Sbjct: 568 Q 568

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  124 bits (314), Expect = 2e-30
 Identities = 47/287 (16%), Positives = 93/287 (32%), Gaps = 20/287 (6%)

Query: 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLI 189
             +     +TY    D  L  +       ++  S +   +    +        SN + L 
Sbjct: 6   PCIEVVPNITY-QCMDQKLSKVPD-----DIPSSTKNIDLSFNPLKILKSYSFSNFSELQ 59

Query: 190 IIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRS 249
            + L   ++          L  L  L L  N ++   P +   LT L  L     K +  
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 250 IPACFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLTGPLPLEIENLK-- 305
                  L +L+ L++  N + S  L   F NL ++++++ S N++      +++ L+  
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 306 --VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIP-YSIGDLISLKSLNLSN 362
             V + +D S+N    +       +K L  L +  N    +I    + +L  L    L  
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 363 NNLSGTIPVS------LEKLSYLEDLNLSFNKLAGEIPRGGSFGNFS 403
                   +       +E L  +                   F   +
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  170 bits (434), Expect = 2e-47
 Identities = 90/389 (23%), Positives = 162/389 (41%), Gaps = 38/389 (9%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
              L      VL    +   +     ++  +   +     +  S+  +    L NL  + 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDGVE--YLNNLTQIN 74

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
             +N      P  + N +KL  + + +N  +   P    NL NL  +TL+NN +T     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD---- 126

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
              +  L N   L  ++LS N +  I   +++  L+ SL+     N        + ++NL
Sbjct: 127 ---IDPLKNLTNLNRLELSSNTISDI---SALSGLT-SLQQLSFGNQVTD---LKPLANL 176

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNK 245
           T L  + +  NK+  S    L+KL  L+ L   +N++    P  +  LT L EL L  N+
Sbjct: 177 TTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232

Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLK 305
               I    ++L +L  L L +N+++++      L  +  L   +N ++   PL    L 
Sbjct: 233 LK-DIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPL--AGLT 287

Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNL 365
            L  ++ + N    + P  I +LK L YL + +N +    P  +  L  L+ L   NN +
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

Query: 366 SGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
           S     SL  L+ +  L+   N+++   P
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  167 bits (425), Expect = 3e-46
 Identities = 100/385 (25%), Positives = 171/385 (44%), Gaps = 36/385 (9%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
            +  L NL  +  S+N+L  + P  + N++ L    ++NN ++  ++ +A   L NL  L
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLAN--LTNLTGL 117

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
            + +N      P  + N + L+ LEL  N+ S         L +L +++  N        
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ------- 166

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
            +  L  L+N  TL  +D+S N +  I   + +  L+ +LE     N  +S   P  +  
Sbjct: 167 -VTDLKPLANLTTLERLDISSNKVSDI---SVLAKLT-NLESLIATNNQISDITP--LGI 219

Query: 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSN 244
           LTNL  + L GN+L      TL+ L  L  L LA+N++    P  +  LT+L EL LG+N
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275

Query: 245 KFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENL 304
           + S   P   + L +L  L L  N+L  I     NLK++ YL    N ++   P+   +L
Sbjct: 276 QISNISP--LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPVS--SL 330

Query: 305 KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNN 364
             L  + F  N  S V    + +L  + +L  G+N++    P  + +L  +  L L++  
Sbjct: 331 TKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386

Query: 365 LSGTIPVSLEKLSYLEDLNLSFNKL 389
            +         +S    +      L
Sbjct: 387 WTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (403), Expect = 3e-43
 Identities = 91/390 (23%), Positives = 164/390 (42%), Gaps = 35/390 (8%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
            + NL NL  L L +N++  + P  + N++ L   E+S+N++S  +S+++G  L +L+ L
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSG--LTSLQQL 161

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
               N      P  + N + L  L++  N  S         L NL  +   NN ++    
Sbjct: 162 SF-GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--- 213

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
               ++ L     L  + L+ N L  I    ++ +L+ +L    + N  +S      +S 
Sbjct: 214 ----ITPLGILTNLDELSLNGNQLKDI---GTLASLT-NLTDLDLANNQISN--LAPLSG 263

Query: 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSN 244
           LT L  + LG N+++   P  L+ L  L  L L +N+LE   P  I  L  L  L L  N
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319

Query: 245 KFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENL 304
             S   P   S+L  L+ L   +N+++ +  +  NL +I +L+   N ++   P  + NL
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANL 374

Query: 305 KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNN 364
             +  +  +   ++        ++     +      L    P +I D  S    +++ N 
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNL 432

Query: 365 LSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
            S T  VS    S    +       +G + 
Sbjct: 433 PSYTNEVSYT-FSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (330), Expect = 3e-33
 Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 23/282 (8%)

Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC 172
            L +  +T  T  +N + + +         L    +   +      +L   +        
Sbjct: 2   PLGSATITQDTP-INQIFTDTALAEKMKTVLGKTNVTDTVS---QTDLD-QVTTLQADRL 56

Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICR 232
            +     + +  L NL  I    N+L    P  L  L KL  + + +N++    P  +  
Sbjct: 57  GIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LAN 110

Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF 292
           LT L  L L +N+ +   P    NL +L  L L SN ++ I      L  +  L+F +  
Sbjct: 111 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQV 167

Query: 293 LTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL 352
                   + NL  L  +D S N  S +    +  L  L+ L    N++    P  +G L
Sbjct: 168 TD---LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGIL 220

Query: 353 ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
            +L  L+L+ N L      +L  L+ L DL+L+ N+++   P
Sbjct: 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 260

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  161 bits (409), Expect = 3e-45
 Identities = 57/342 (16%), Positives = 116/342 (33%), Gaps = 49/342 (14%)

Query: 58  LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
               E L  + +         +   S+       D +       +     N N   +   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL---SQWQRHYNADRN----RWHSAWRQANSNNPQIETR 63

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
              +  +  + L   +       ++L   PL                             
Sbjct: 64  TGRALKATADLLEDATQPG-RVALELRSVPLPQF-------------------------- 96

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
            P++   L++L  + +    L   +P T+ +   L+ L+LA N L  ++P +I  L  L 
Sbjct: 97  -PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 238 ELDLGSNKFSRSIPACFSN---------LASLRTLSLGSNELTSIPLTFWNLKDILYLNF 288
           EL + +      +P   ++         L +L++L L    + S+P +  NL+++  L  
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI 213

Query: 289 SSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV-GYNRLQGSIPY 347
            ++ L+  L   I +L  L  +D          P   G    L+ L +   + L  ++P 
Sbjct: 214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPL 271

Query: 348 SIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
            I  L  L+ L+L        +P  + +L     + +  +  
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  145 bits (369), Expect = 1e-39
 Identities = 59/316 (18%), Positives = 104/316 (32%), Gaps = 32/316 (10%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
                +   +       +             N +  ++   +  +L  +   +     P 
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALKATADLLEDATQPG 82

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
              L +RS       P   F  S L  + +        +PDT      L  +TL  N L 
Sbjct: 83  RVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR 140

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
           +        +S+++   L  + +   P    LP   + +                     
Sbjct: 141 A------LPASIASLNRLRELSIRACPELTELP-EPLASTD----------------ASG 177

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
           E   L NL  + L    +  S+P +++ LQ L+ L + ++ L  ++   I  L +L ELD
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 241 LGSNKFSRSIPACFSNLASLRTLSL-GSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL 299
           L      R+ P  F   A L+ L L   + L ++PL    L  +  L+         LP 
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 300 EIENLKVLVGIDFSVN 315
            I  L     I    +
Sbjct: 296 LIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (318), Expect = 2e-32
 Identities = 47/243 (19%), Positives = 83/243 (34%), Gaps = 20/243 (8%)

Query: 163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKL 222
             E  Y           + +S                             Q  +     L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRAL 68

Query: 223 EGSIPNNICRLTE--LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNL 280
           + +  + +   T+     L+L S       P     L+ L+ +++ +  L  +P T    
Sbjct: 69  K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQF 126

Query: 281 KDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS---------LKGL 331
             +  L  + N L   LP  I +L  L  +          +P  + S         L  L
Sbjct: 127 AGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 332 QYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG 391
           Q L + +  ++ S+P SI +L +LKSL + N+ LS  +  ++  L  LE+L+L       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 392 EIP 394
             P
Sbjct: 244 NYP 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (295), Expect = 3e-29
 Identities = 42/251 (16%), Positives = 92/251 (36%), Gaps = 27/251 (10%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           + P +   L +L+ + +    L+  +P  +   + L+   ++ N L    +SIA   L  
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIA--SLNR 151

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L  L +R+      +P  + +                        L NL  + L    + 
Sbjct: 152 LRELSIRACPELTELPEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIR 196

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
           S        +S++N + L  + + ++PL  + P  ++ +L   LE   +  C      P 
Sbjct: 197 S------LPASIANLQNLKSLKIRNSPLSALGP--AIHHL-PKLEELDLRGCTALRNYPP 247

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
                  L  + L       ++P+ + +L +L+ L L        +P+ I +L     + 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 241 LGSNKFSRSIP 251
           +  +  ++   
Sbjct: 308 VPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 27/204 (13%), Positives = 56/204 (27%), Gaps = 35/204 (17%)

Query: 209 LQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268
               + L    +       + + +    Y  D      +        N  + +  +    
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGR 66

Query: 269 ELTSIPLTFWNLKDI--LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIG 326
            L +      +      + L   S  L                            P    
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-------------------------QFPDQAF 101

Query: 327 SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF 386
            L  LQ++ +    L   +P ++     L++L L+ N L   +P S+  L+ L +L++  
Sbjct: 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 387 NKLAGEIPRGGSFGNFSAESFEGN 410
                E+P      +  A      
Sbjct: 160 CPELTELPE--PLASTDASGEHQG 181

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (404), Expect = 9e-42
 Identities = 93/452 (20%), Positives = 157/452 (34%), Gaps = 43/452 (9%)

Query: 8   NLRNLELLVLSHNKL-VGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
            L +L  L L    L   V+    F N+  L   ++S N +       +  +L +L+ + 
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 66  MRSNNFCGTIPHFIFN---ASKLSLLELGDNSFSGFIPDTFGNLRN------LNKVTLYN 116
             SN     +            LS   L  NS    +   +G   N      L  + +  
Sbjct: 155 FSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 117 NYLTSSTSDLNF-------LSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169
           N  T   +             SL     +       + +      T  G    S+ +  +
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 170 PNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNN 229
            +  V          L +L ++ L  NK+N         L  LQ L+L+ N L     +N
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP---------LTFWNL 280
              L ++  +DL  N  +      F  L  L+TL L  N LT+I          L+   L
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL 393

Query: 281 KDILYLNFSSNFL--------TGPLPLEIENLKVLVGIDFSVNNFSGVIPT-TIGSLKGL 331
             +  +N ++N +           +   +  +  L  +  + N FS      T      L
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 332 QYLFVGYNRLQGSIPYSI-----GDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF 386
           + LF+G N LQ +    +       L  L+ L L++N L+   P     L+ L  L+L+ 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 387 NKLAGEIPRGGSFGNFSAESFEGNELLCGSPN 418
           N+L   +       N        N+LL  +P+
Sbjct: 514 NRLT-VLSHNDLPANLEILDISRNQLLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  155 bits (394), Expect = 2e-40
 Identities = 86/440 (19%), Positives = 150/440 (34%), Gaps = 58/440 (13%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
            L   E L+LS N +  V  +    +  L++ E+ +     ++   A   LPNL +L + 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 68  SNNFCGTIPHFIF-NASKLSLLELGDNSFSGFI--PDTFGNLRNLNKVTLYNNYLTSSTS 124
           S+     +    F     L  L L     S  +     F NL+ L ++ L  N + S   
Sbjct: 82  SSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--- 137

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
            L    S     +L  ID S N +  +           +L +F +   ++   +  +   
Sbjct: 138 -LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 185 LTN------LIIIYLGGNK------------LNGSIPITLSKLQKLQGLSLADNKLEGSI 226
             N      L I+ + GN             ++ S   +L     + G     + ++   
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DP 255

Query: 227 PNNI---CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFWNLKD 282
             N       + +  LDL            F  L  L+ L+L  N++  I    F+ L +
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 283 ILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
           +  LN S N L          L  +  ID   N+ + +   T   L+ LQ L +  N L 
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 343 GSIPYSIGDLISLKSLNLSNNNLSG---------------------TIPVSLEKLSYLED 381
                +I  + S+  + LS N L                        I   L ++ +L+ 
Sbjct: 376 -----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 382 LNLSFNKLAGEIPRGGSFGN 401
           L L+ N+         +   
Sbjct: 431 LILNQNRF-SSCSGDQTPSE 449

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (295), Expect = 6e-28
 Identities = 71/341 (20%), Positives = 128/341 (37%), Gaps = 38/341 (11%)

Query: 3   PHEIGNLRNLELLVLSHNKLVGVIPTKVF---NVSTLKVFEVSNNSLSGSLSSIAGVRLP 59
              +    ++       + +        F     S+++  ++S+  +  SL+S     L 
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLK 290

Query: 60  NLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
           +L+VL +  N     I    F     L +L L  N         F  L  +  + L  N+
Sbjct: 291 DLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 119 LTSSTSDL--------------NFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSL 164
           +                     N L+++    ++  I LS N L       ++  ++ + 
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL------VTLPKINLTA 403

Query: 165 EYFYMPNCNVSG-GIPEEISNLTNLIIIYLGGNKLNG-SIPITLSKLQKLQGLSLADNKL 222
              ++    +    I   +  + +L I+ L  N+ +  S   T S+   L+ L L +N L
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 223 EGSIPNNICR-----LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTF 277
           + +    +C      L+ L  L L  N  +   P  FS+L +LR LSL SN LT +    
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS-HN 522

Query: 278 WNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS 318
               ++  L+ S N L  P P    +L V   +D + N F 
Sbjct: 523 DLPANLEILDISRNQLLAPNPDVFVSLSV---LDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  111 bits (279), Expect = 7e-26
 Identities = 60/293 (20%), Positives = 108/293 (36%), Gaps = 29/293 (9%)

Query: 124 SDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI- 182
              N         T   + LS N +  +    S   L   L+   + +      I +E  
Sbjct: 12  RFCNLTQVPQVLNTTERLLLSFNYIRTVTAS-SFPFLEQ-LQLLELGSQYTPLTIDKEAF 69

Query: 183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSI--PNNICRLTELYELD 240
            NL NL I+ LG +K+    P     L  L  L L    L  ++        L  L  LD
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 241 LGSNKFSR-SIPACFSNLASLRTLSLGSNELTSIP-LTFWNL--KDILYLNFSSNFLTGP 296
           L  N+     +   F  L SL+++   SN++  +       L  K + + + ++N L   
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 297 LPLEIENL------KVLVGIDFSVNNFSGVIP------------TTIGSLKGLQYLFVGY 338
           + ++           VL  +D S N ++  I              ++     +     G+
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 339 NRLQGSIPYSIGDL--ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
           + ++     +   L   S++ L+LS+  +        E L  L+ LNL++NK+
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 282 DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
           D     +    LT  +P  +   + L     S N    V  ++   L+ LQ L +G    
Sbjct: 5   DGRIAFYRFCNLTQ-VPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 342 QGSI-PYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFG 400
             +I   +  +L +L+ L+L ++ +    P + + L +L +L L F  L+  + + G F 
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 401 N 401
           N
Sbjct: 121 N 121

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  155 bits (394), Expect = 2e-41
 Identities = 80/402 (19%), Positives = 141/402 (35%), Gaps = 26/402 (6%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSI-AGV-RLP 59
           +P    NL NLE L LS NK+  +  T +  +  + +  +S +     ++ I  G  +  
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 60  NLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSG------FIPDTFGNLRNLNKV 112
            L  L +R+N     +        + L +  L    F        F       L NL   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC 172
                YL     D+      +    ++   L    ++ +   +        LE       
Sbjct: 261 EFRLAYLDYYLDDII--DLFNCLTNVSSFSLVSVTIERVKDFSYNFGW-QHLELVNCKFG 317

Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLE--GSIPNNI 230
                       L +L  +    NK   +   +   L  L+ L L+ N L   G    + 
Sbjct: 318 QFPTL------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 231 CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP--LTFWNLKDILYLNF 288
              T L  LDL  N    ++ + F  L  L  L    + L  +     F +L++++YL+ 
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 289 SSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTI-GSLKGLQYLFVGYNRLQGSIPY 347
           S              L  L  +  + N+F       I   L+ L +L +   +L+   P 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 348 SIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
           +   L SL+ LN+++N L        ++L+ L+ + L  N  
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (374), Expect = 1e-38
 Identities = 79/417 (18%), Positives = 148/417 (35%), Gaps = 34/417 (8%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           +IP  +    + + L LS N L  +     F+   L+V ++S   +  ++   A   L +
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L  L +  N             S L  L   + + +       G+L+ L ++ + +N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGT--SVGNLSHSLEYFYMPNCNVSGGI 178
           S           SN   L ++DLS N +  I       +  +        + + N    I
Sbjct: 138 S----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL-SLNPMNFI 192

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPIT-LSKLQKLQGLSLA------DNKLEGSIPNNIC 231
                    L  + L  N  + ++  T +  L  L+   L       +  LE    + + 
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 232 RLTELYELDLGSNK---FSRSIPACFSNLASLRTLSLGSNELTSIP--LTFWNLKDILYL 286
            L  L   +        +   I   F+ L ++ + SL S  +  +      +  + +  +
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 287 NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ--GS 344
           N           L++++LK L    F+ N            L  L++L +  N L   G 
Sbjct: 313 NCKFGQFP---TLKLKSLKRL---TFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGC 364

Query: 345 IPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGN 401
              S     SLK L+LS N +  T+  +   L  LE L+   + L  ++     F +
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (372), Expect = 3e-38
 Identities = 82/437 (18%), Positives = 149/437 (34%), Gaps = 47/437 (10%)

Query: 3   PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLE 62
            +   +   L++L LS  ++  +      ++S L    ++ N +  SL+  A   L +L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ 103

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTS 121
            L     N        I +   L  L +  N    F +P+ F NL NL  + L +N + S
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 122 -STSDLNFLSSLSNCK---------------------TLTYIDLSDNPLDGILPGTSVGN 159
              +DL  L  +                          L  + L +N     +  T +  
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 160 LSH----SLEYFYMPNCNVSGGIPEEI-SNLTNLIIIYLGGNKLNGS---IPITLSKLQK 211
           L+      L      N        +     L NL I       L+     I    + L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 212 LQGLSLADNKLEGSIPNNI--CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNE 269
           +   SL    +E  + +         L  ++    +F          L SL+ L+  SN+
Sbjct: 284 VSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNK 336

Query: 270 LTSIPLTFWNLKDILYLNFSSNFLT--GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS 327
             +   +  +L  + +L+ S N L+  G           L  +D S N     + +    
Sbjct: 337 GGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 394

Query: 328 LKGLQYLFVGYNRLQGSIPYSI-GDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF 386
           L+ L++L   ++ L+    +S+   L +L  L++S+ +           LS LE L ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 387 NKLAGEIPRGGSFGNFS 403
           N           F    
Sbjct: 455 NSFQENFLP-DIFTELR 470

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (304), Expect = 3e-29
 Identities = 70/377 (18%), Positives = 125/377 (33%), Gaps = 40/377 (10%)

Query: 3   PHEIGNLRNLEL----LVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRL 58
             ++  L  + L    L LS N +   I    F    L    + NN  S ++       L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 59  PNLEVLRMRSNNFCG-----TIPHFIF-NASKLSLLELGDNSFSGF---IPDTFGNLRNL 109
             LEV R+    F                   L++ E        +   I D F  L N+
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 110 NKVTLYNNYLTSSTSDLNFLSSLS---------------NCKTLTYIDLSDNPLDGILPG 154
           +  +L +  +     D ++                      K+L  +  + N        
Sbjct: 285 SSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 155 TSVGNLSHSLEYFYMPNCNVS--GGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKL 212
             +     SLE+  +    +S  G   +     T+L  + L  N +  ++      L++L
Sbjct: 344 VDL----PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398

Query: 213 QGLSLADNKLEGSIPNNI-CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT 271
           + L    + L+     ++   L  L  LD+       +    F+ L+SL  L +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 272 SI--PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLK 329
               P  F  L+++ +L+ S   L    P    +L  L  ++ + N    V       L 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 330 GLQYLFVGYNRLQGSIP 346
            LQ +++  N    S P
Sbjct: 519 SLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 9e-19
 Identities = 40/223 (17%), Positives = 87/223 (39%), Gaps = 11/223 (4%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSG-SLSSIAGVRLPNLEVLRM 66
            L++L+ L  + NK          ++ +L+  ++S N LS     S +     +L+ L +
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 67  RSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIP-DTFGNLRNLNKVTLYNNYLTSSTSD 125
            S N   T+        +L  L+   ++         F +LRNL  + + + +   + + 
Sbjct: 381 -SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
           +      +   +L  + ++ N             L  +L +  +  C +    P   ++L
Sbjct: 440 I-----FNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSL 493

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPN 228
           ++L ++ +  N+L         +L  LQ + L  N  + S P 
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 30/123 (24%), Positives = 49/123 (39%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
           +LRNL  L +SH             +S+L+V +++ NS   +        L NL  L + 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
                   P    + S L +L +  N         F  L +L K+ L+ N    S   ++
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538

Query: 128 FLS 130
           +LS
Sbjct: 539 YLS 541

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (377), Expect = 4e-39
 Identities = 79/418 (18%), Positives = 152/418 (36%), Gaps = 39/418 (9%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
           +L +LE L LS N L   + +  F  +S+LK   +  N       +     L NL+ LR+
Sbjct: 72  SLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 67  RSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
            +      I    F   + L+ LE+   S   +   +  ++R+++ +TL+ +        
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGN--------LSHSLEYFYMPNCNVSGG 177
                      ++ Y++L D  L          +        L+         + N    
Sbjct: 191 -----FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQK--------LQGLSLADNKLEGSIPNN 229
           +   I  L+ +       N L    P     + +        ++ L +    L   +   
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

Query: 230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLT----FWNLKDILY 285
              L ++  + + ++K      +   +L SL  L L  N +    L           +  
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365

Query: 286 LNFSSNFLT--GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
           L  S N L         +  LK L  +D S N F   +P +    + +++L +    ++ 
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR- 423

Query: 344 SIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGN 401
            +   I    +L+ L++SNNNL  +  + L +   L++L +S NKL   +P    F  
Sbjct: 424 VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (364), Expect = 2e-37
 Identities = 74/425 (17%), Positives = 145/425 (34%), Gaps = 50/425 (11%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
            G L +L+ L L  N    +  T +F N++ L+   + N      +  I    L +L  L
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS--- 121
            +++ +        + +   +  L L  +  +  +      L ++  + L +  L     
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 122 -----------------------STSDLNFLSSLSNCKTLTYIDLSDNPLDGI--LPGTS 156
                                    S    L  L     L+ ++  D  L+G+     + 
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 157 VGNLSH-------SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKL 209
              +S        ++   ++P   +   +    S L  +  I +  +K+          L
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 210 QKLQGLSLADNKLEGSIPNN---ICRLTELYELDLGSNKFS--RSIPACFSNLASLRTLS 264
           + L+ L L++N +      N         L  L L  N     +        L +L +L 
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 265 LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTT 324
           +  N    +P +    + + +LN SS  +        + L+VL   D S NN        
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL---DVSNNNLDSFSL-- 448

Query: 325 IGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNL 384
              L  LQ L++  N+L+ ++P        L  + +S N L        ++L+ L+ + L
Sbjct: 449 --FLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

Query: 385 SFNKL 389
             N  
Sbjct: 505 HTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (335), Expect = 2e-33
 Identities = 72/422 (17%), Positives = 149/422 (35%), Gaps = 38/422 (9%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            IP  +     ++ L LS NK+  +    +   + L+V  + ++ ++ ++   A   L +
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGS 75

Query: 61  LEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNY 118
           LE L +  N+   ++    F   S L  L L  N +    +   F NL NL  + + N  
Sbjct: 76  LEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
             S    ++F    +   +L  +++    L       S+ ++   + +  +     +  +
Sbjct: 135 TFSEIRRIDF----AGLTSLNELEIKALSLRNYQSQ-SLKSI-RDIHHLTLHLSESAFLL 188

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEG----------SIPN 228
                 L+++  + L    L       L   +    +     +              +  
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248

Query: 229 NICRLTELYELDLGSNK---FSRSIPACFSNLASLRTLSLGSNELTSIPLT------FWN 279
            I  L+E+   D   N    F+ S     S L  + T+++    +    L       +  
Sbjct: 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 280 LKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTT---IGSLKGLQYLFV 336
           L+ +  +   ++ +        ++LK L  +D S N             G+   LQ L +
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 337 GYNRLQ--GSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
             N L+        +  L +L SL++S N     +P S +    +  LNLS   +   + 
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVK 426

Query: 395 RG 396
             
Sbjct: 427 TC 428

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (333), Expect = 4e-33
 Identities = 62/378 (16%), Positives = 128/378 (33%), Gaps = 29/378 (7%)

Query: 49  SLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRN 108
           S +SI       ++ L +  N         +   + L +L L  +  +    D F +L +
Sbjct: 16  SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFY 168
           L  + L +N+L+S +S            +L Y++L  NP   +   +   NL+ +L+   
Sbjct: 76  LEHLDLSDNHLSSLSSSW-----FGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-NLQTLR 129

Query: 169 MPNCNVSGGIPEE-ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP 227
           + N      I     + LT+L  + +    L      +L  ++ +  L+L  ++    + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 228 NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN-----------ELTSIPLT 276
                L+ +  L+L     +R   +          +   +            EL  +   
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 277 FWNLKDILYLNFSSNFLTGPLPLEIENLK--------VLVGIDFSVNNFSGVIPTTIGSL 328
              L ++ + + + N L    P E + +          +  +          + T    L
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 329 KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTI---PVSLEKLSYLEDLNLS 385
           + ++ + V  +++          L SL+ L+LS N +                L+ L LS
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 386 FNKLAGEIPRGGSFGNFS 403
            N L      G       
Sbjct: 370 QNHLRSMQKTGEILLTLK 387

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (294), Expect = 4e-28
 Identities = 59/377 (15%), Positives = 110/377 (29%), Gaps = 44/377 (11%)

Query: 3   PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLE 62
             +   L +L  L +    L       + ++  +    +  +  +  L  I    L ++ 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS 122
            L +R  N        +      S ++      S    ++F  L  L +  L  + +   
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 123 TSDLNFLSSLS-------------NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169
              LN L   +                T+  + +    L   L           ++   +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL--EKVKRITV 317

Query: 170 PNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPIT---LSKLQKLQGLSLADNKLE--G 224
            N  V         +L +L  + L  N +                LQ L L+ N L    
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDIL 284
                +  L  L  LD+  N F   +P        +R L+L S  +  +       + + 
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC--IPQTLE 434

Query: 285 YLNFSSNFLTGPLPLEIENLKV-------------------LVGIDFSVNNFSGVIPTTI 325
            L+ S+N L     L +  L+                    L+ +  S N    V     
Sbjct: 435 VLDVSNNNLDS-FSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIF 493

Query: 326 GSLKGLQYLFVGYNRLQ 342
             L  LQ +++  N   
Sbjct: 494 DRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (255), Expect = 3e-23
 Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 8/278 (2%)

Query: 134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYL 193
           +C      D        I        L+ +++   +    ++     ++    NL ++ L
Sbjct: 3   SCDASGVCDGRSRSFTSIPS-----GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 194 GGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR-SIPA 252
             +++N         L  L+ L L+DN L     +    L+ L  L+L  N +    + +
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 253 CFSNLASLRTLSLGS-NELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGI 310
            F NL +L+TL +G+    + I  + F  L  +  L   +  L       +++++ +  +
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIP 370
              ++  + ++      L  ++YL +    L       +        +       S    
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 371 VSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFE 408
            S  +L  L    L  +++  +       G+F+    +
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 16/149 (10%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           +    +  L+NL  L +S N     +P        ++   +S+  +      +       
Sbjct: 378 KTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR----VVKTCIPQT 432

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           LEVL + +NN    +  F     +L  L +  N        +      L  + +  N L 
Sbjct: 433 LEVLDVSNNN----LDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLK 486

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLD 149
           S               +L  I L  NP D
Sbjct: 487 SVPD-----GIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            +P        +  L LS   +  V+ T +    TL+V +VSNN+L  S S      LP 
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFSL----FLPR 452

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L+ L +  N    T+P        L ++++  N         F  L +L K+ L+ N   
Sbjct: 453 LQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

Query: 121 SSTSDLNFLS 130
            S   +++LS
Sbjct: 511 CSCPRIDYLS 520

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  145 bits (369), Expect = 2e-38
 Identities = 86/402 (21%), Positives = 150/402 (37%), Gaps = 67/402 (16%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           E+P    +L++L +   +   L  + P        L+   VSNN L   L  +       
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPELQ--NSSF 154

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L+++ + +N+    +P    +   L  +  G+N     +P+   NL  L  +   NN L 
Sbjct: 155 LKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK 208

Query: 121 S-------------STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYF 167
                           + L  L  L N   LT I   +N L       ++ +L  SLE  
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL------KTLPDLPPSLEAL 262

Query: 168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP 227
            + +  ++  +PE   +LT L +     + L+   P        L  L+ + N++  S+ 
Sbjct: 263 NVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLC 313

Query: 228 NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLN 287
           +    L EL   ++ +NK    +PA    L     L    N L  +P    NLK    L+
Sbjct: 314 DLPPSLEEL---NVSNNKLI-ELPALPPRL---ERLIASFNHLAEVPELPQNLK---QLH 363

Query: 288 FSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPY 347
              N L    P   E+++ L      +N+    +P    +LK    L V  N L+   P 
Sbjct: 364 VEYNPLRE-FPDIPESVEDL-----RMNSHLAEVPELPQNLK---QLHVETNPLR-EFPD 413

Query: 348 SIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
                 S++ L +++  +      + E    LED     +  
Sbjct: 414 IPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  141 bits (358), Expect = 4e-37
 Identities = 82/399 (20%), Positives = 141/399 (35%), Gaps = 64/399 (16%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           E+P E  N+++      + ++     P        + V  + +                 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC------------LDRQ 72

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
              L + +     ++P    +   L  L    NS +  +P+   +L++L         L+
Sbjct: 73  AHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 127

Query: 121 SSTS----------DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP 170
                          L  L  L N   L  ID+ +N L        + +L  SLE+    
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL------KKLPDLPPSLEFIAAG 181

Query: 171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI 230
           N  +   +P E+ NL  L  IY   N L   +P     L+    +   +N L       +
Sbjct: 182 NNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNIL--EELPEL 233

Query: 231 CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSS 290
             L  L  +   +N    ++P       SL  L++  N LT +P    +L    +L+ S 
Sbjct: 234 QNLPFLTTIYADNNLLK-TLP---DLPPSLEALNVRDNYLTDLPELPQSLT---FLDVSE 286

Query: 291 NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG 350
           N  +G L     NL  L   + S N     I +       L+ L V  N+L   +P    
Sbjct: 287 NIFSG-LSELPPNLYYL---NASSNE----IRSLCDLPPSLEELNVSNNKLI-ELPALPP 337

Query: 351 DLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
               L+ L  S N+L+  +P   + L     L++ +N L
Sbjct: 338 ---RLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (300), Expect = 3e-29
 Identities = 75/350 (21%), Positives = 129/350 (36%), Gaps = 48/350 (13%)

Query: 58  LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
              L+     S+N    +P    N    +      + +    P   G  R +    L + 
Sbjct: 10  NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 118 YLTSSTS-DL--NFLSSL-SNCKTLTYIDLSDNPLDGI--------------LPGTSVGN 159
               +   +L    LSSL      L  +  S N L  +                  ++ +
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 128

Query: 160 LSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLAD 219
           L   LEY  + N  +   +P E+ N + L II +  N L   +P     L+    ++  +
Sbjct: 129 LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF---IAAGN 182

Query: 220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWN 279
           N+LE  +P  +  L  L  +   +N     +P       SL ++  G+N L  +P    N
Sbjct: 183 NQLE-ELP-ELQNLPFLTAIYADNNSLK-KLP---DLPLSLESIVAGNNILEELP-ELQN 235

Query: 280 LKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN 339
           L  +  +   +N L   LP    +L+ L       +N+   +P    SL  L      ++
Sbjct: 236 LPFLTTIYADNNLLKT-LPDLPPSLEAL----NVRDNYLTDLPELPQSLTFLDVSENIFS 290

Query: 340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
            L    P       +L  LN S+N +  ++    +    LE+LN+S NKL
Sbjct: 291 GLSELPP-------NLYYLNASSNEIR-SLC---DLPPSLEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (286), Expect = 2e-27
 Identities = 58/323 (17%), Positives = 112/323 (34%), Gaps = 53/323 (16%)

Query: 98  FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTS- 156
           FI     +   L +   +++ LT             N K+ T    + +  +   P  + 
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLTE------MPVEAENVKSKTEYYNAWSEWERNAPPGNG 55

Query: 157 ----------VGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITL 206
                        L        + N  +S  +PE   +L +L       N L   +P   
Sbjct: 56  EQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELP 110

Query: 207 SKLQKLQGLSLADNKLEGSIPN---------------NICRLTELYELDLGSNKFSRSIP 251
             L+ L   +     L    P                 +   + L  +D+ +N     +P
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLP 169

Query: 252 ACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGID 311
                  SL  ++ G+N+L  +P    NL  +  +   +N L   LP    +L+ +    
Sbjct: 170 ---DLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESI---V 221

Query: 312 FSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV 371
              N         + +L  L  ++   N L+ ++P       SL++LN+ +N L+  +P 
Sbjct: 222 AGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPE 274

Query: 372 SLEKLSYLEDLNLSFNKLAGEIP 394
             + L++L+     F+ L+   P
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPP 297

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  144 bits (364), Expect = 2e-38
 Identities = 67/377 (17%), Positives = 130/377 (34%), Gaps = 29/377 (7%)

Query: 43  NNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPD 101
           +            + L N +++  +++     +P  +  +  ++ LL L D         
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTY 87

Query: 102 TFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS 161
            F     + K+ +  N +      +       N   LT + L  N L  +  G       
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLPPHV-----FQNVPLLTVLVLERNDLSSLPRGIFHNT-- 140

Query: 162 HSLEYFYMPNCNVSGGIPEEI-SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADN 220
             L    M N N+   I ++     T+L  + L  N+L     + LS +  L   +++ N
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYN 196

Query: 221 KLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNL 280
            L       +     + ELD   N  +  +         L  L L  N LT       N 
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDTA-WLLNY 247

Query: 281 KDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR 340
             ++ ++ S N L   +      ++ L  +  S N     +      +  L+ L + +N 
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

Query: 341 LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFG 400
           L   +  +      L++L L +N++  T+ +S      L++L LS N           F 
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD-CNSLRALFR 361

Query: 401 NFSAESFEGNELLCGSP 417
           N +  + +  +  C   
Sbjct: 362 NVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (354), Expect = 6e-37
 Identities = 62/360 (17%), Positives = 131/360 (36%), Gaps = 51/360 (14%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
            L N +++   ++ +  +    + +   +++  +++  +   + + A      ++ L M 
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 101

Query: 68  SNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDL 126
            N     +P  +F N   L++L L  N  S      F N   L  +++ NN L     D 
Sbjct: 102 FNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 127 NFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLT 186
                     +L  + LS N L  +   + + +L H+         NVS  +   ++   
Sbjct: 161 -----FQATTSLQNLQLSSNRLTHV-DLSLIPSLFHA---------NVSYNLLSTLAIPI 205

Query: 187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKF 246
            +  +    N +N  +   +    +L  L L  N L       +     L E+DL  N+ 
Sbjct: 206 AVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNEL 260

Query: 247 SRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKV 306
            + +   F  +  L  L + +N L ++ L    +  +  L+ S N L             
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL------------ 308

Query: 307 LVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS 366
                         +         L+ L++ +N +  ++   +    +LK+L LS+N+  
Sbjct: 309 -------------HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (311), Expect = 4e-31
 Identities = 64/331 (19%), Positives = 127/331 (38%), Gaps = 25/331 (7%)

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
                  I   +        + +   +   +       L N   VT  N+ +    + L 
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL- 64

Query: 128 FLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI-SNLT 186
               L + + +  ++L+D  ++ I          H+++  YM    +   +P  +  N+ 
Sbjct: 65  ----LDSFRQVELLNLNDLQIEEIDTYAFAYA--HTIQKLYMGFNAIR-YLPPHVFQNVP 117

Query: 187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICR-LTELYELDLGSNK 245
            L ++ L  N L+           KL  LS+++N LE  I ++  +  T L  L L SN+
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176

Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLK 305
            +  +    S + SL   ++  N L+++         +  L+ S N +          L 
Sbjct: 177 LT-HVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVELT 229

Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNL 365
           +L       NN +      + +  GL  + + YN L+  + +    +  L+ L +SNN L
Sbjct: 230 IL---KLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 366 SGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG 396
              + +  + +  L+ L+LS N L   + R 
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 313

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (298), Expect = 2e-29
 Identities = 66/361 (18%), Positives = 115/361 (31%), Gaps = 58/361 (16%)

Query: 1   EIPHEI-GNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRL 58
           EI          ++ L +  N +   +P  VF NV  L V  +  N LS SL        
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140

Query: 59  PNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
           P L  L M +NN    I    F   + L  L+L  N  +        +L + N   +  N
Sbjct: 141 PKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN---VSYN 196

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
            L+          +L+    +  +D S N ++ +                          
Sbjct: 197 LLS----------TLAIPIAVEELDASHNSINVVRGPV---------------------- 224

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTEL 236
                     L I+ L  N L       L     L  + L+ N+LE  I  +   ++  L
Sbjct: 225 -------NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL 274

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296
             L + +N+   ++      + +L+ L L  N L  +         +  L    N +   
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-- 331

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLK 356
             L++     L  +  S N++       +   + +    V        I Y +   +  K
Sbjct: 332 -TLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCK 388

Query: 357 S 357
            
Sbjct: 389 E 389

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (360), Expect = 3e-37
 Identities = 57/397 (14%), Positives = 109/397 (27%), Gaps = 49/397 (12%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           +     +  N++ L LS N L  +    +   + L++  +S+N L      +    L  L
Sbjct: 26  LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLES--LSTL 82

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
             L + +N         +     +  L   +N+ S          +N+    L NN +T 
Sbjct: 83  RTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITM 134

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
                           + Y+DL  N +D +                            E 
Sbjct: 135 LRDL-----DEGCRSRVQYLDLKLNEIDTVNF-------------------------AEL 164

Query: 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241
            ++   L  + L  N +   +        KL+ L L+ NKL   +         +  + L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 242 GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEI 301
            +NK    I        +L    L  N      L  +  K+      +   +        
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 302 ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS----IPYSIGDLISLKS 357
           E   V     +       +       L  L+         QGS    +     +    + 
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 358 LNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
           ++         I     +      L      L  ++ 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (344), Expect = 5e-35
 Identities = 52/400 (13%), Positives = 119/400 (29%), Gaps = 52/400 (13%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           I     N    ++  ++ + L   + +                               N+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALAS-------------------------LRQSAWNV 36

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           + L +  N         +   +KL LL L  N     +     +L  L  + L NNY+  
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ- 93

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
                     L    ++  +  ++N +  +             +  Y+ N  ++     +
Sbjct: 94  ---------ELLVGPSIETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLD 139

Query: 182 ISNLTNLIIIYLGGNKLNG-SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
               + +  + L  N+++  +     +    L+ L+L  N +   +   +    +L  LD
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLD 197

Query: 241 LGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLE 300
           L SNK +  +   F + A +  +SL +N+L  I       +++ + +   N       L 
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC-GTLR 255

Query: 301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNL 360
               K       +      +                G    +         LI+LK    
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 361 SNNNLSG----TIPVSLEKLSYLEDLNLSFNKLAGEIPRG 396
           +  +  G     +    E  +   +++    +    +   
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQ 354

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (332), Expect = 2e-33
 Identities = 55/350 (15%), Positives = 110/350 (31%), Gaps = 22/350 (6%)

Query: 58  LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
               ++ ++  ++    +     +A  +  L+L  N  S            L  + L +N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
            L            L +  TL  +DL++N +  +L G        S+E  +  N N+S  
Sbjct: 69  VLYE-------TLDLESLSTLRTLDLNNNYVQELLVGP-------SIETLHAANNNISRV 114

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEG-SIPNNICRLTEL 236
                    N+   YL  NK+     +      ++Q L L  N+++  +          L
Sbjct: 115 SCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296
             L+L  N     +       A L+TL L SN+L  +   F +   + +++  +N L   
Sbjct: 172 EHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL- 228

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLK 356
           +   +   + L   D   N F           K  +   V    ++     +  +     
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 357 SLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAES 406
             +              ++L  L+    +     G           +   
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (299), Expect = 6e-29
 Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 12/214 (5%)

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
            I E   N     I  +  + L  ++         ++ L L+ N L      ++   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296
             L+L SN           +L++LRTL L +N +  +         I  L+ ++N ++  
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISR- 113

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG-SIPYSIGDLISL 355
             +     +    I  + N  + +     G    +QYL +  N +   +         +L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 356 KSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
           + LNL  N +   +   +   + L+ L+LS NKL
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 41/379 (10%), Positives = 94/379 (24%), Gaps = 35/379 (9%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
                +  + + L++NK+  +        S ++  ++  N +     +        LE L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
            +   NF   +   +   +KL  L+L  N  + F+   F +   +  ++L NN L     
Sbjct: 175 NL-QYNFIYDVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL--- 228

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE---- 180
                 +L   + L + DL  N                           ++G   E    
Sbjct: 229 ---IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 181 --------------EISNLTNLIIIYLGGNKLN-------GSIPITLSKLQKLQGLSLAD 219
                                LI +    + L          +        + + +    
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWN 279
            +    I     R      L+         +       A L      +     +      
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 280 LKDILYLNFSSN-FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGY 338
              +  L      +    +  +      +   D   +  + +        K      +  
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465

Query: 339 NRLQGSIPYSIGDLISLKS 357
                ++   +    +L S
Sbjct: 466 ASANATLQELVVREQNLAS 484

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  142 bits (360), Expect = 1e-36
 Identities = 76/339 (22%), Positives = 124/339 (36%), Gaps = 50/339 (14%)

Query: 50  LSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNL 109
           +  +         VL +  +    T+P  +     ++ L + DN+ +  +P     LR L
Sbjct: 31  VQKMRACLNNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL 86

Query: 110 NKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169
               +  N LTS                L+        L  +            L   ++
Sbjct: 87  E---VSGNQLTS------LPVLPPGLLELSIFSNPLTHLPALPS---------GLCKLWI 128

Query: 170 PNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNN 229
               ++  +P     L  L    +  N+L  S+P   S+L KL      +N+L  S+P  
Sbjct: 129 FGNQLTS-LPVLPPGLQEL---SVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPML 179

Query: 230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFS 289
              L EL    +  N+ + S+P      + L  L   +N LTS+P     LK    L  S
Sbjct: 180 PSGLQEL---SVSDNQLA-SLPT---LPSELYKLWAYNNRLTSLPALPSGLK---ELIVS 229

Query: 290 SNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSI 349
            N LT  LP+    LK L     S N  +  +P     L     L V  N+L   +P S+
Sbjct: 230 GNRLTS-LPVLPSELKEL---MVSGNRLTS-LPMLPSGL---LSLSVYRNQLT-RLPESL 280

Query: 350 GDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
             L S  ++NL  N LS     +L +++     +    +
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  123 bits (309), Expect = 6e-30
 Identities = 76/356 (21%), Positives = 118/356 (33%), Gaps = 56/356 (15%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            +P     LR LE   +S N+L   +P     +  L +F      L    S         
Sbjct: 75  SLPALPPELRTLE---VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------G 122

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L  L +  N    ++P        L  L + DN  +  +P     L  L     YNN LT
Sbjct: 123 LCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLAS-LPALPSELCKLW---AYNNQLT 174

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
           S           S    L  + +SDN L   LP T    L   L  +     N    +P 
Sbjct: 175 S------LPMLPSG---LQELSVSDNQL-ASLP-TLPSELY-KLWAYN----NRLTSLPA 218

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
             S L  L    + GN+L  S+P+  S+L++   L ++ N+L  S+P     L     L 
Sbjct: 219 LPSGLKEL---IVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGLL---SLS 267

Query: 241 LGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL----NFSSNFLTGP 296
           +  N+ +  +P    +L+S  T++L  N L+   L                   +     
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIP----TTIGSLKGLQYLFVGYNRLQGSIPYS 348
            P E   L +               P       G         +  +RL  +  + 
Sbjct: 327 APRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFI 382

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (268), Expect = 9e-25
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 27/210 (12%)

Query: 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSN 244
                ++ +G + L  ++P  L     +  L + DN L  S+P     L  L   ++  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91

Query: 245 KFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENL 304
           + + S+P     L  L   S     L ++P        +  L    N LT  LP+    L
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTS-LPVLPPGL 143

Query: 305 KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNN 364
           + L     S N  +  +P     L     L+   N+L  S+P        L+ L++S+N 
Sbjct: 144 QEL---SVSDNQLA-SLPALPSEL---CKLWAYNNQLT-SLPMLPS---GLQELSVSDNQ 192

Query: 365 LSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
           L+ ++P    +L  L   N     L     
Sbjct: 193 LA-SLPTLPSELYKLWAYNNRLTSLPALPS 221

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  139 bits (352), Expect = 1e-35
 Identities = 67/377 (17%), Positives = 130/377 (34%), Gaps = 29/377 (7%)

Query: 43  NNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPD 101
           +            + L N +++  +++     +P  +  +  ++ LL L D         
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTY 93

Query: 102 TFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS 161
            F     + K+ +  N +      +       N   LT + L  N L  +  G       
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLPPHV-----FQNVPLLTVLVLERNDLSSLPRGIFHNT-- 146

Query: 162 HSLEYFYMPNCNVSGGIPEEI-SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADN 220
             L    M N N+   I ++     T+L  + L  N+L     + LS +  L   +++ N
Sbjct: 147 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYN 202

Query: 221 KLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNL 280
            L       +     + ELD   N  +  +         L  L L  N LT       N 
Sbjct: 203 LLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDTA-WLLNY 253

Query: 281 KDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR 340
             ++ ++ S N L   +      ++ L  +  S N     +      +  L+ L + +N 
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 312

Query: 341 LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFG 400
           L   +  +      L++L L +N++  T+ +S      L++L LS N           F 
Sbjct: 313 LL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD-CNSLRALFR 367

Query: 401 NFSAESFEGNELLCGSP 417
           N +  + +  +  C   
Sbjct: 368 NVARPAVDDADQHCKID 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  138 bits (349), Expect = 3e-35
 Identities = 60/381 (15%), Positives = 134/381 (35%), Gaps = 31/381 (8%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
            L N +++   ++ +   +P  +  +   +++  +++  +   + + A      ++ L M
Sbjct: 49  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYM 106

Query: 67  RSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
             N     +P  +F N   L++L L  N  S      F N   L  +++ NN L     D
Sbjct: 107 GFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
                      +L  + LS N L  +     +  +  SL +  +    +S      ++  
Sbjct: 166 T-----FQATTSLQNLQLSSNRLTHV----DLSLIP-SLFHANVSYNLLS-----TLAIP 210

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNK 245
             +  +    N +N    +      +L  L L  N L       +     L E+DL  N+
Sbjct: 211 IAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNE 265

Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLK 305
             + +   F  +  L  L + +N L ++ L    +  +  L+ S N L   +        
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFD 324

Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNL 365
            L  +    N+   +    + +   L+ L + +N    +         ++    + + + 
Sbjct: 325 RLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQ 379

Query: 366 SGTIPVSLEKLSYLEDLNLSF 386
              I   LE     ++ +  +
Sbjct: 380 HCKIDYQLEHGLCCKESDKPY 400

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  130 bits (328), Expect = 2e-32
 Identities = 72/369 (19%), Positives = 128/369 (34%), Gaps = 78/369 (21%)

Query: 1   EIPHEI-GNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLP 59
           ++P  +  + R +ELL L+  ++   I T  F                            
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFA------------------------YAH 99

Query: 60  NLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
            ++ L M  N     +P  +F N   L++L L  N  S      F N   L  +++ NN 
Sbjct: 100 TIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           L     D           +L  + LS N L  +                           
Sbjct: 159 LERIEDDT-----FQATTSLQNLQLSSNRLTHV--------------------------- 186

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238
             ++S + +L    +  N L+     TL+    ++ L  + N +   +   +    EL  
Sbjct: 187 --DLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVN--VELTI 236

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPL 297
           L L  N  +        N   L  + L  NEL  I    F  ++ +  L  S+N L   L
Sbjct: 237 LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 293

Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS 357
            L  + +  L  +D S N+    +         L+ L++ +N +  ++   +    +LK+
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKN 349

Query: 358 LNLSNNNLS 366
           L LS+N+  
Sbjct: 350 LTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 1e-29
 Identities = 66/332 (19%), Positives = 128/332 (38%), Gaps = 29/332 (8%)

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFG-----NLRNLNKVTLYNNYL 119
           + R N       +   +++        D        D +       L N   VT  N+ +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
               + L     L + + +  ++L+D  ++ I          H+++  YM    +   +P
Sbjct: 64  RKLPAAL-----LDSFRQVELLNLNDLQIEEIDTYAFAYA--HTIQKLYMGFNAIR-YLP 115

Query: 180 EEI-SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTELY 237
             +  N+  L ++ L  N L+           KL  LS+++N LE  I ++     T L 
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ 174

Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPL 297
            L L SN+ +  +    S + SL   ++  N L+++         +  L+ S N +    
Sbjct: 175 NLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVR 227

Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS 357
                 L +L       NN +      + +  GL  + + YN L+  + +    +  L+ 
Sbjct: 228 GPVNVELTIL---KLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282

Query: 358 LNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
           L +SNN L   + +  + +  L+ L+LS N L
Sbjct: 283 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.1 bits (239), Expect = 4e-21
 Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 13/233 (5%)

Query: 160 LSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLAD 219
           +     Y   P       I   +        +++     +         L   + ++  +
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 220 NKLEGSIPNNI-CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTF 277
           + +   +P  +     ++  L+L   +        F+   +++ L +G N +  +P   F
Sbjct: 61  STMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119

Query: 278 WNLKDILYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV 336
            N+  +  L    N L+  LP  I  N   L  +  S NN   +   T  +   LQ L +
Sbjct: 120 QNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 337 GYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
             NRL   +   +  + SL   N+S N LS     +L     +E+L+ S N +
Sbjct: 179 SSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 54/316 (17%), Positives = 92/316 (29%), Gaps = 21/316 (6%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
           + N   L  + LS+N+L   I    F  +  L+   +SNN L  +L+   G  +P L+VL
Sbjct: 250 LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNL-YGQPIPTLKVL 306

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
            +  N+    +        +L  L L  NS       T   L+NL    L +N    +  
Sbjct: 307 DLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCN-- 360

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYF-----YMPNCNVSGGIP 179
             +  +   N       D   +          +        Y      Y+   +V   + 
Sbjct: 361 --SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQ 418

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSI----PNNICRLTE 235
                 +    I    +  +         LQ  + L    N+L   +       I +   
Sbjct: 419 RAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQL 478

Query: 236 LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTG 295
           L  L    +   R        LA                  F   +       +      
Sbjct: 479 LQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKE 538

Query: 296 PLPLEIENLKVLVGID 311
              LE EN+ +   +D
Sbjct: 539 TEDLEQENIALEKQLD 554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 1/128 (0%)

Query: 269 ELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSL 328
           E   I            ++            E   L     + F  +    +    + S 
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74

Query: 329 KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
           + ++ L +   +++    Y+     +++ L +  N +    P   + +  L  L L  N 
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 389 LAGEIPRG 396
           L+  +PRG
Sbjct: 135 LS-SLPRG 141

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 33/311 (10%), Positives = 97/311 (31%), Gaps = 27/311 (8%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            +      +  L++L LSHN L+  +         L+   + +N    S+ ++       
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN----SIVTLKLSTHHT 346

Query: 61  LEVLRMRSNNF-CGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK--VTLYNN 117
           L+ L +  N++ C ++     N ++ ++ +   +    +  +     +  +K  +     
Sbjct: 347 LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQ 406

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGI-----LPGTSVGNLSHSLEYFYMPNC 172
           Y+  ++       +   C     I+   +    I     +P      L   +        
Sbjct: 407 YIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

Query: 173 NVSGGIPEEIS-----------NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNK 221
            ++    ++             NL    +   G  + + ++    + L++ Q   L +  
Sbjct: 467 QLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRET- 525

Query: 222 LEGSIPNNICRLTELYELDLGSNKFSRSI-PACFSNLASLRTLSLGSNELTSIPLTFWNL 280
            +        +  E  +L+  +    + +           +  SL   ++  +       
Sbjct: 526 -QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584

Query: 281 KDILYLNFSSN 291
            D   ++   +
Sbjct: 585 PDTRRVSHHHH 595

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (335), Expect = 5e-35
 Identities = 50/317 (15%), Positives = 111/317 (35%), Gaps = 48/317 (15%)

Query: 75  IPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSN 134
           I     N ++  + ++ D+S    +     +  N+ ++ L  N L+  ++       L+ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-----DLAP 56

Query: 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG 194
              L  ++LS N L   L                             + +L+ L  + L 
Sbjct: 57  FTKLELLNLSSNVLYETLD----------------------------LESLSTLRTLDLN 88

Query: 195 GNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACF 254
            N +       L     ++ L  A+N +   +  +         + L +NK +       
Sbjct: 89  NNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDE 140

Query: 255 SNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDF 312
              + ++ L L  NE+ ++       +   + +LN   NF+   +  ++     L  +D 
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDL 198

Query: 313 SVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS-GTIPV 371
           S N  +  +     S  G+ ++ +  N+L   I  ++    +L+  +L  N    GT+  
Sbjct: 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 372 SLEKLSYLEDLNLSFNK 388
              K   ++ +     K
Sbjct: 257 FFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (312), Expect = 8e-32
 Identities = 44/214 (20%), Positives = 82/214 (38%), Gaps = 12/214 (5%)

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
            I E   N     I  +  + L  ++         ++ L L+ N L      ++   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296
             L+L SN           +L++LRTL L +N +  +         I  L+ ++N ++  
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISR- 113

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG-SIPYSIGDLISL 355
             +     +    I  + N  + +     G    +QYL +  N +   +         +L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 356 KSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
           + LNL  N +   +       + L+ L+LS NKL
Sbjct: 172 EHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (306), Expect = 6e-31
 Identities = 49/361 (13%), Positives = 108/361 (29%), Gaps = 47/361 (13%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           I     N    ++  ++ + L   + +                               N+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALAS-------------------------LRQSAWNV 36

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           + L +  N         +   +KL LL L  N     +     +L  L  + L NNY+  
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ- 93

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
                     L    ++  +  ++N +  +             +  Y+ N  ++     +
Sbjct: 94  ---------ELLVGPSIETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLD 139

Query: 182 ISNLTNLIIIYLGGNKLNG-SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
               + +  + L  N+++  +     +    L+ L+L  N +   +   +    +L  LD
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLD 197

Query: 241 LGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLE 300
           L SNK +  +   F + A +  +SL +N+L  I       +++ + +   N       L 
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC-GTLR 255

Query: 301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNL 360
               K       +      +                G    +         LI+L   + 
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

Query: 361 S 361
            
Sbjct: 316 H 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  135 bits (342), Expect = 1e-34
 Identities = 72/345 (20%), Positives = 123/345 (35%), Gaps = 39/345 (11%)

Query: 74  TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLS 133
            +P  I   ++  LL+LG N       D F +  +L ++ L  N +++         + +
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-----AFN 77

Query: 134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYL 193
           N   L  + L  N L  I  G                            + L+NL  + +
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGV--------------------------FTGLSNLTKLDI 111

Query: 194 GGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTELYELDLGSNKFSRSIPA 252
             NK+   +      L  L+ L + DN L   I +     L  L +L L     +     
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTE 170

Query: 253 CFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGID 311
             S+L  L  L L    + +I   +F  L  +  L  S       +         L  + 
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 312 FSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV 371
            +  N + V    +  L  L++L + YN +       + +L+ L+ + L    L+   P 
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290

Query: 372 SLEKLSYLEDLNLSFNKLAGEIPRG--GSFGNFSAESFEGNELLC 414
           +   L+YL  LN+S N+L   +      S GN      + N L C
Sbjct: 291 AFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (337), Expect = 4e-34
 Identities = 68/345 (19%), Positives = 127/345 (36%), Gaps = 39/345 (11%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            +P  I       LL L  N++  +   +  +   L+  E++ N +S ++   A   L N
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81

Query: 61  LEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL 119
           L  L +RSN     IP  +F   S L+ L++ +N     +   F +L NL  + + +N L
Sbjct: 82  LRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
              +       + S   +L  + L    L  I                            
Sbjct: 141 VYISHR-----AFSGLNSLEQLTLEKCNLTSIPTEA------------------------ 171

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             +S+L  LI++ L    +N     +  +L +L+ L ++      ++  N      L  L
Sbjct: 172 --LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229

Query: 240 DLGSNKFSRSIPAC-FSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPL 297
            +     + ++P     +L  LR L+L  N +++I       L  +  +      L    
Sbjct: 230 SITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288

Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
           P     L  L  ++ S N  + +  +   S+  L+ L +  N L 
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  131 bits (332), Expect = 2e-33
 Identities = 83/409 (20%), Positives = 145/409 (35%), Gaps = 66/409 (16%)

Query: 11  NLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSN 69
           ++  + LS N +   +    F  +  L+  +V   +    + +     L +L +L++  N
Sbjct: 31  HVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 70  NFCGTIPHFIFNA-SKLSLLELGDNSFSGFI--PDTFGNLRNLNKVTLYNNYLTSSTSDL 126
            F   +    FN  + L +L L   +  G +   + F  L +L  + L +N +       
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 127 NFLSSLSNCKTLTYIDLSDNPLDGI-------LPGTSVGNLS-HSLEYFYMPNCNVSGGI 178
            F  ++        +DL+ N +  I         G     L   S+    M    +    
Sbjct: 149 FF-LNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIP------ITLSKLQKLQGLSLADNKLEGSIPNNICR 232
                  T++  + L GN    S+       I  +K+Q L  LS + N        N   
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI-LSNSYNMGSSFGHTNFKD 263

Query: 233 L----------TELYELDLGSNKFSRSIPAC-FSNLASLRTLSLGSNELTSIPL-TFWNL 280
                      + +   DL  +K   ++    FS+   L  L+L  NE+  I    FW L
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

Query: 281 KDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR 340
             +L LN S NFL                       F          L  L+ L + YN 
Sbjct: 323 THLLKLNLSQNFLG----------------SIDSRMFEN--------LDKLEVLDLSYNH 358

Query: 341 LQGSIPYSIGD-LISLKSLNLSNNNLSGTIPVS-LEKLSYLEDLNLSFN 387
           ++ ++       L +LK L L  N L  ++P    ++L+ L+ + L  N
Sbjct: 359 IR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  119 bits (301), Expect = 2e-29
 Identities = 80/378 (21%), Positives = 132/378 (34%), Gaps = 57/378 (15%)

Query: 34  STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGD 92
           + +   ++S NS++  L+  +  RL +L+ L++        I +  F   S L +L+L  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 93  NSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGIL 152
           N F       F  L NL  +TL    L  +    NF   L++   L  + L DN +  I 
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS---LEMLVLRDNNIKKIQ 145

Query: 153 PGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQK- 211
           P +                            N+    ++ L  NK+       L   Q  
Sbjct: 146 PASF-------------------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180

Query: 212 -LQGLSLADNKLEGSIPNNIC--------RLTELYELDLGSNKFSRSIPACFSNLAS--- 259
               L L+   L+      +         + T +  LDL  N F  S+   F +  +   
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240

Query: 260 LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG 319
           +++L L ++          N KD     F          LE   +K     D S +    
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKG--------LEASGVKTC---DLSKSKIFA 289

Query: 320 VIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD-LISLKSLNLSNNNLSGTIPVSLEKLSY 378
           ++ +       L+ L +  N +   I  +    L  L  LNLS N L        E L  
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 379 LEDLNLSFNKLAGEIPRG 396
           LE L+LS+N +   +   
Sbjct: 349 LEVLDLSYNHI-RALGDQ 365

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  117 bits (296), Expect = 1e-28
 Identities = 72/336 (21%), Positives = 135/336 (40%), Gaps = 31/336 (9%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSL-SGSLSSIAGVRLPNLEVLR 65
            L +L +L L +N+ +  + T  F  ++ L+V  ++  +L    LS      L +LE+L 
Sbjct: 77  GLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 66  MRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
           +R NN     P   F N  +  +L+L  N       +   N +  +   L  + +T    
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195

Query: 125 DLNFLSSLS-----NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
           +  +L            ++T +DLS N     +       ++ +     + + + + G  
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 180 EEISNL-------------TNLIIIYLGGNKLNGSIPITL-SKLQKLQGLSLADNKLEGS 225
              +N              + +    L  +K+  ++  ++ S    L+ L+LA N++   
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-K 313

Query: 226 IPNNIC-RLTELYELDLGSNKFSRSIPAC-FSNLASLRTLSLGSNELTSIPL-TFWNLKD 282
           I +N    LT L +L+L  N    SI +  F NL  L  L L  N + ++   +F  L +
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372

Query: 283 ILYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNF 317
           +  L   +N L   +P  I + L  L  I    N +
Sbjct: 373 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.8 bits (210), Expect = 9e-18
 Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%)

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICR-LTELYELDLGSN 244
            ++  + L  N +      + S+LQ LQ L +        I NN  R L+ L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 245 KFSRSIPACFSNLASLRTLSLGSNELTSIPL---TFWNLKDILYLNFSSNFLTGPLPLEI 301
           +F +     F+ LA+L  L+L    L    L    F  L  +  L    N +    P   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 302 -ENLKVLVGIDFSVNNFSGVIPTTIGSLKGL----------QYLFVGYNRLQGSIPYSIG 350
             N++    +D + N    +    + + +G               +    L      +  
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 351 DLISLKSLNLSNNNLSGTIP---VSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESF 407
              S+ +L+LS N    ++          + ++ L LS +   G      +F +    +F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 408 EG 409
           +G
Sbjct: 270 KG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 10/141 (7%)

Query: 11  NLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSN 69
            ++   LS +K+   +   VF + + L+   ++ N ++  +   A   L +L  L +  N
Sbjct: 276 GVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333

Query: 70  NFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNF 128
              G+I   +F    KL +L+L  N        +F  L NL ++ L  N L S       
Sbjct: 334 FL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD--GI 390

Query: 129 LSSLSNCKTLTYIDLSDNPLD 149
              L++   L  I L  NP D
Sbjct: 391 FDRLTS---LQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
           +  +LE L L+ N++   I    F  ++ L    +S N L  S+ S     L  LEVL +
Sbjct: 297 HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDL 354

Query: 67  RSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
             N+    +    F     L  L L  N         F  L +L K+ L+ N    S   
Sbjct: 355 SYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413

Query: 126 LNFLSS 131
           +++LS 
Sbjct: 414 IDYLSR 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  126 bits (319), Expect = 8e-32
 Identities = 66/379 (17%), Positives = 126/379 (33%), Gaps = 46/379 (12%)

Query: 11  NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN 70
           N    V +  ++          ++TL   +  N+S++  ++ I    L  L  L   SNN
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEK--LTGLTKLICTSNN 75

Query: 71  FCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLS 130
              T+   +   + L+ L    N  +         L  L  +    N LT          
Sbjct: 76  I-TTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK--------L 121

Query: 131 SLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLII 190
            +S    LTY++ + N L  I     V + +  L                +++  T L  
Sbjct: 122 DVSQNPLLTYLNCARNTLTEI----DVSHNT-QLTELDCHLNKKIT--KLDVTPQTQLTT 174

Query: 191 IYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI 250
           +    NK+     + +S+ + L  L+   N +   +   + +  +L  LD  SNK +  I
Sbjct: 175 LDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EI 227

Query: 251 PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGI 310
               + L  L       N LT +      L  +  L+     L     +++ +   L+  
Sbjct: 228 D--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYF 280

Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIP 370
                     +   +     L  L      +   +   +     L  L L+N  L+  + 
Sbjct: 281 QAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD 334

Query: 371 VSLEKLSYLEDLNLSFNKL 389
           VS    + L+ L+     +
Sbjct: 335 VS--HNTKLKSLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (301), Expect = 2e-29
 Identities = 67/384 (17%), Positives = 131/384 (34%), Gaps = 48/384 (12%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
              L  L  L   ++ +  +  T +  ++ L     ++N    +++++   +  NL  L 
Sbjct: 38  EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN----NITTLDLSQNTNLTYLA 91

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
             SN     +   +   +KL+ L    N  +            L  +    N LT     
Sbjct: 92  CDSNKL-TNLD--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTE---- 141

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
                 +S+   LT +D   N     L    V   +  L         ++     ++S  
Sbjct: 142 ----IDVSHNTQLTELDCHLNKKITKLD---VTPQT-QLTTLDCSFNKITE---LDVSQN 190

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNK 245
             L  +    N +     + L++  +L  L  + NKL   I   +  LT+L   D   N 
Sbjct: 191 KLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNP 244

Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLK 305
            +  +    S L+ L TL     +L  I LT  +   ++Y             L++ +  
Sbjct: 245 LT-ELD--VSTLSKLTTLHCIQTDLLEIDLT--HNTQLIYFQAEGCRKIK--ELDVTHNT 297

Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNL 365
            L  +D      + +    +     L YL++    L   +   +     LKSL+  N ++
Sbjct: 298 QLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

Query: 366 SGTIPVSLEKLSYLEDLNLSFNKL 389
                 S+ K+  L +   +  + 
Sbjct: 352 Q-DFS-SVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (277), Expect = 3e-26
 Identities = 54/387 (13%), Positives = 118/387 (30%), Gaps = 46/387 (11%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
            I  L  L  L+ + N +  +    +   + L      +N L+    ++    L  L  L
Sbjct: 59  GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLT----NLDVTPLTKLTYL 111

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
              +N     +   +     L+ L    N+ +        +   L ++  + N   +   
Sbjct: 112 NCDTNKL-TKLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT--- 162

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
                  ++    LT +D S N +  +     V      L        N++     +++ 
Sbjct: 163 ----KLDVTPQTQLTTLDCSFNKITEL----DVSQNK-LLNRLNCDTNNITK---LDLNQ 210

Query: 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSN 244
              L  +    NKL     I ++ L +L     + N L   +   +  L++L  L     
Sbjct: 211 NIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQT 264

Query: 245 KFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENL 304
                I    ++   L              L   +   +  L+  +  +T    L++   
Sbjct: 265 DLL-EID--LTHNTQLIYFQAEGCRKIKE-LDVTHNTQLYLLDCQAAGIT---ELDLSQN 317

Query: 305 KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNN 364
             LV +  +    + +    +     L+ L      +Q     S+G + +L +   +   
Sbjct: 318 PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQ 372

Query: 365 LSGTIPVSLEKLSYLEDLNLSFNKLAG 391
                  +L   S    ++       G
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (276), Expect = 4e-26
 Identities = 64/331 (19%), Positives = 110/331 (33%), Gaps = 39/331 (11%)

Query: 59  PNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
            N       +     T        + L+ L+  ++S +         L  L K+   +N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           +T+          LS    LTY+    N L  +     V  L+  L Y       ++   
Sbjct: 76  ITTL--------DLSQNTNLTYLACDSNKLTNL----DVTPLT-KLTYLNCDTNKLT--- 119

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238
             ++S    L  +    N L     I +S   +L  L    NK    +   +   T+L  
Sbjct: 120 KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTT 174

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLP 298
           LD   NK +  +    S    L  L+  +N +T + L       + +L+ SSN LT    
Sbjct: 175 LDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITKLDLN--QNIQLTFLDCSSNKLTE--- 226

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
           +++  L  L   D SVN  + +    + +L  L  L      L   I   +     L   
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYF 280

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
                     + V+    + L  L+     +
Sbjct: 281 QAEGCRKIKELDVT--HNTQLYLLDCQAAGI 309

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (251), Expect = 8e-23
 Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 39/304 (12%)

Query: 86  SLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSD 145
           +L      SF+ + PD   N  +            +         S     TLT +D  +
Sbjct: 2   TLKAGQTQSFNDWFPDD--NFASEVAAAFEMQATDTI--------SEEQLATLTSLDCHN 51

Query: 146 NPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPIT 205
           + +  +   T +  L+  L      + N++     ++S  TNL  +    NKL     + 
Sbjct: 52  SSITDM---TGIEKLT-GLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTN---LD 101

Query: 206 LSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSL 265
           ++ L KL  L+   NKL      ++ +   L  L+   N  +  I    S+   L  L  
Sbjct: 102 VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDC 155

Query: 266 GSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTI 325
             N+  +          +  L+ S N +T    L++   K+L  ++   NN + +    +
Sbjct: 156 HLNKKITKL-DVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKL---DL 208

Query: 326 GSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLS 385
                L +L    N+L   I   +  L  L   + S N L+  + VS   LS L  L+  
Sbjct: 209 NQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCI 262

Query: 386 FNKL 389
              L
Sbjct: 263 QTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.5 bits (243), Expect = 7e-22
 Identities = 62/368 (16%), Positives = 122/368 (33%), Gaps = 43/368 (11%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
           +  L  L  L    NKL  +  ++      L     + N+L+     I       L  L 
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLDVSQNPL---LTYLNCARNTLT----EIDVSHNTQLTELD 154

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
              N     +   +   ++L+ L+   N  +          + LN++    N +T     
Sbjct: 155 CHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKL--- 206

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
                 L+    LT++D S N L  I     V  L+  L YF      ++     ++S L
Sbjct: 207 -----DLNQNIQLTFLDCSSNKLTEI----DVTPLT-QLTYFDCSVNPLT---ELDVSTL 253

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNK 245
           + L  ++     L     I L+   +L        +    +  ++   T+LY LD  +  
Sbjct: 254 SKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAG 308

Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLK 305
            +  +    S    L  L L + ELT + ++  +   +  L+  +  +       +  + 
Sbjct: 309 IT-ELD--LSQNPKLVYLYLNNTELTELDVS--HNTKLKSLSCVNAHIQD-FS-SVGKIP 361

Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG---SIPYSIGDLISLKSLNLSN 362
            L     +      +   T+ +      +        G   +I    G +    +  ++ 
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITW 421

Query: 363 NNLSGTIP 370
            NLS   P
Sbjct: 422 ENLSTDNP 429

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 13/141 (9%)

Query: 254 FSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
              LA+L +L   ++ +T +      L  +  L  +SN +T    L++     L  +   
Sbjct: 38  EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACD 93

Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSL 373
            N  + +    +  L  L YL    N+L       +     L  LN + N L+    + +
Sbjct: 94  SNKLTNL---DVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDV 144

Query: 374 EKLSYLEDLNLSFNKLAGEIP 394
              + L +L+   NK   ++ 
Sbjct: 145 SHNTQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 18/145 (12%), Positives = 49/145 (33%), Gaps = 11/145 (7%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
           ++ +   L        + +  +   V + + L + +     ++     +   + P L  L
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT----ELDLSQNPKLVYL 323

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
            + +      +   + + +KL  L   +     F   + G +  LN          +   
Sbjct: 324 YLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPK 378

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLD 149
           +    +SL+   +   +D   NP++
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGNPMN 403

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (307), Expect = 6e-31
 Identities = 59/327 (18%), Positives = 121/327 (37%), Gaps = 53/327 (16%)

Query: 74  TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLS 133
            +P  +      +LL+L +N  +      F NL+NL+ + L NN ++  +       + +
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-----AFA 97

Query: 134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI-SNLTNLIIIY 192
               L  + LS N L  +        +  +L+   +    ++  + + + + L  +I++ 
Sbjct: 98  PLVKLERLYLSKNQLKELPEK-----MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVE 151

Query: 193 LGGNKLNGSI--PITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI 250
           LG N L  S         ++KL  + +AD  +  +IP  +     L EL L  NK ++  
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVD 208

Query: 251 PACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVG 309
            A    L +L  L L  N ++++   +  N   +  L+ ++N L                
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--------------- 253

Query: 310 IDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG------SIPYSIGDLISLKSLNLSNN 363
                      +P  +   K +Q +++  N +          P       S   ++L +N
Sbjct: 254 ----------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 364 NLSGTI--PVSLEKLSYLEDLNLSFNK 388
            +      P +   +     + L   K
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  116 bits (292), Expect = 6e-29
 Identities = 60/311 (19%), Positives = 103/311 (33%), Gaps = 39/311 (12%)

Query: 59  PNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
           P+  +L +++N     I    F N   L  L L +N  S   P  F  L  L ++ L  N
Sbjct: 52  PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP-NCNVSG 176
            L      +         KTL  + + +N +  +      G   + +    +  N   S 
Sbjct: 111 QLKELPEKM-P-------KTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSS 160

Query: 177 GIPEEI-SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLT 234
           GI       +  L  I +    +  +IP  L     L  L L  NK+   +       L 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLN 216

Query: 235 ELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT 294
            L +L L  N  S       +N   LR L L +N+L  +P    + K I  +   +N ++
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276

Query: 295 GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI--PYSIGDL 352
                             ++ +     P           + +  N +Q     P +   +
Sbjct: 277 ------------------AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 353 ISLKSLNLSNN 363
               ++ L N 
Sbjct: 319 YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  113 bits (285), Expect = 5e-28
 Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 21/272 (7%)

Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
                +DL +N +  I  G    NL + L    + N  +S   P   + L  L  +YL  
Sbjct: 52  PDTALLDLQNNKITEIKDG-DFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTELYELDLGSNKFSRSI--PA 252
           N+L   +P  +   + LQ L + +N++   +  ++   L ++  ++LG+N    S     
Sbjct: 110 NQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 253 CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGID 311
            F  +  L  + +    +T+IP     +L     L+   N +T      ++ L  L  + 
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 312 FSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG---- 367
            S N+ S V   ++ +   L+ L +  N+L   +P  + D   ++ + L NNN+S     
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 368 --TIPVSLEKLSYLEDLNLSFNKL-AGEIPRG 396
               P    K +    ++L  N +   EI   
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  111 bits (280), Expect = 3e-27
 Identities = 61/299 (20%), Positives = 103/299 (34%), Gaps = 48/299 (16%)

Query: 3   PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLE 62
             +  NL+NL  L+L +NK+   I    F                          L  LE
Sbjct: 69  DGDFKNLKNLHTLILINNKIS-KISPGAFA------------------------PLVKLE 103

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS 122
            L +  N     +P  +     L  L + +N  +      F  L  +  V L  N L SS
Sbjct: 104 RLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 123 TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI 182
             +      +     L+YI ++D  +  I  G     L  SL   ++    ++  +    
Sbjct: 161 GIENGAFQGMKK---LSYIRIADTNITTIPQG-----LPPSLTELHLDGNKIT-KVDAAS 211

Query: 183 -SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241
              L NL  + L  N ++     +L+    L+ L L +NKL   +P  +     +  + L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 242 GSNKFSR------SIPACFSNLASLRTLSLGSNELTSIPL---TFWNLKDILYLNFSSN 291
            +N  S         P   +  AS   +SL SN +    +   TF  +     +   + 
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (256), Expect = 3e-24
 Identities = 62/263 (23%), Positives = 106/263 (40%), Gaps = 41/263 (15%)

Query: 138 LTYIDLSDNPLDGILPGTSV-GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGN 196
           L  +  SD  L        V  +L        + N  ++     +  NL NL  + L  N
Sbjct: 33  LRVVQCSDLGL------EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 197 KLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSN 256
           K++   P   + L KL+ L L+ N+L+  +P  +     L EL +  N+ ++   + F+ 
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNG 143

Query: 257 LASLRTLSLGSNELTSIPL---TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
           L  +  + LG+N L S  +    F  +K + Y+  +   +T                   
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT------------------- 184

Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSL 373
                  IP   G    L  L +  N++      S+  L +L  L LS N++S     SL
Sbjct: 185 ------TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 374 EKLSYLEDLNLSFNKLAGEIPRG 396
               +L +L+L+ NKL  ++P G
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGG 258

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 22/223 (9%)

Query: 9   LRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSL-SGSLSSIAGVRLPNLEVLRM 66
            + L+ L +  N++   +   VF  ++ + V E+  N L S  + + A   +  L  +R+
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 67  RSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDL 126
              N   TIP  +     L+ L L  N  +     +   L NL K+ L  N +++  +  
Sbjct: 179 ADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG- 234

Query: 127 NFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPN------CNVSGGIPE 180
               SL+N   L  + L++N L  + PG    +    ++  Y+ N       +     P 
Sbjct: 235 ----SLANTPHLRELHLNNNKLVKV-PGGLADH--KYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 181 EISNLTNLIIIYLGGNKLNGSI--PITLSKLQKLQGLSLADNK 221
             +   +   + L  N +      P T   +     + L + K
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 34/193 (17%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
            ++ L  + ++   +   IP  +    +L    +  N ++  + + +   L NL  L + 
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGL- 223

Query: 68  SNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS-STSD 125
           S N    + +    N   L  L L +N     +P    + + +  V L+NN +++  ++D
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI-SN 184
                  +   + + + L  NP+                             I       
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQ-------------------------YWEIQPSTFRC 317

Query: 185 LTNLIIIYLGGNK 197
           +     + LG  K
Sbjct: 318 VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 5/143 (3%)

Query: 259 SLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS 318
            LR +      L  +P       D   L+  +N +T     + +NLK L  +    N  S
Sbjct: 32  HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 319 GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSY 378
            + P     L  L+ L++  N+L+  +P       +L+ L +  N ++         L+ 
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELP--EKMPKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 379 LEDLNLSFNKLAGEIPRGGSFGN 401
           +  + L  N L       G+F  
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQG 169

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  122 bits (308), Expect = 4e-30
 Identities = 73/395 (18%), Positives = 143/395 (36%), Gaps = 17/395 (4%)

Query: 7   GNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSL-SGSLSSIAGVRLPNLEVL 64
               NL+ L LS N    +   K F N+S LK   +S   L   S+  IA + +  + ++
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 65  RMRSNNFCGTIPHF-IFNASKLSLLELGDNSFSGFIPDTFGNLRNLN----KVTLYNNYL 119
              +            FN   L ++   +  F   +  +   + NL     K  L +N  
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 120 TSSTSDLNFLSSLSNCKTLTY--IDLSDNPLDGILPGTSVGNLSH-SLEYFYMPNCNVSG 176
           +   S L  L +      LT   I+ + N    IL       + + S+    +       
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
                 ++L  L I  +  +               +   +   +           +++  
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLT---FWNLKDILYLNFSSNFL 293
             LD  +N  + ++     +L  L TL L  N+L  +         +K +  L+ S N +
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

Query: 294 TGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL 352
           +           K L+ ++ S N  +  I   +     ++ L +  N+++ SIP  +  L
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIK-SIPKQVVKL 443

Query: 353 ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387
            +L+ LN+++N L        ++L+ L+ + L  N
Sbjct: 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (277), Expect = 5e-26
 Identities = 72/439 (16%), Positives = 150/439 (34%), Gaps = 46/439 (10%)

Query: 3   PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVST-LKVFEVSNNSLSG------------- 48
             +I +L  L +L++SHN++   +   VF  +  L+  ++S+N L               
Sbjct: 38  TSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD 96

Query: 49  ----SLSSIAGV----RLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIP 100
               +  ++        +  L+ L + + +   +    I + +   +L +   ++     
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

Query: 101 DTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP----LDGILPGTS 156
                L++ N  +L+  + T+         S+     L   ++            L   +
Sbjct: 157 --PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214

Query: 157 VGNLSHSLEYFYMPNCNVSGGIPEEISNL---TNLIIIYLGGNKLNG-----SIPITLSK 208
               +  L    + N   +      I  L   T +    +   KL G         + + 
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 209 LQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268
           L+ L    +  +             + +   +   +        C S ++    L   +N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 269 ELTSIPLT-FWNLKDILYLNFSSNFLT--GPLPLEIENLKVLVGIDFSVNNFSGVIPTTI 325
            LT        +L ++  L    N L     +      +K L  +D S N+ S       
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 326 -GSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNL 384
               K L  L +  N L  +I   +     +K L+L +N +  +IP  + KL  L++LN+
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451

Query: 385 SFNKLAGEIPRGGSFGNFS 403
           + N+L   +P  G F   +
Sbjct: 452 ASNQLK-SVPD-GIFDRLT 468

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.4 bits (245), Expect = 6e-22
 Identities = 64/363 (17%), Positives = 110/363 (30%), Gaps = 31/363 (8%)

Query: 47  SGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNL 106
              L  +         +L +  N         I + SKL +L +  N         F   
Sbjct: 9   KNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN 68

Query: 107 RNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEY 166
           + L  + L +N L   +          N   L ++DLS N  D +      GN+S  L++
Sbjct: 69  QELEYLDLSHNKLVKISCH-----PTVN---LKHLDLSFNAFDALPICKEFGNMS-QLKF 119

Query: 167 FYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSI 226
             +   ++       I++L    ++ + G             LQ     SL         
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 227 PNNICRLTELYELDL-----------GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL 275
            + I  ++     +L               +  SI A       L  L+L + E T    
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 276 T----FWNLKDILYLNFSSNFLTGPLPLEI-----ENLKVLVGIDFSVNNFSGVIPTTIG 326
                      + Y + S+  L G L          +LK L       + F         
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 327 SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF 386
               +       +  +         +     L+ SNN L+ T+  +   L+ LE L L  
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 387 NKL 389
           N+L
Sbjct: 358 NQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.9 bits (241), Expect = 2e-21
 Identities = 68/373 (18%), Positives = 123/373 (32%), Gaps = 36/373 (9%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSL--SGSLSSIAGVRLPNLE 62
           E GN+  L+ L LS   L       + +++  KV  V   +         +      +L 
Sbjct: 110 EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK----VTLYNNY 118
           ++   +  F   +   +   + L L  +               L  L        L  N 
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC--NVSG 176
           + ++ +    +  L    T+ Y  +S+  L G L          SL+   +     +V G
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 177 GIPEEI-SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTE 235
                I    +N+ I     +       +  SK+     L  ++N L  ++  N   LTE
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 236 LYELDLGSNKFSRSIPAC---FSNLASLRTLSLGSNELTSI--PLTFWNLKDILYLNFSS 290
           L  L L  N+    +       + + SL+ L +  N ++           K +L LN SS
Sbjct: 350 LETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 291 NFLTGP---------------------LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLK 329
           N LT                       +P ++  L+ L  ++ + N    V       L 
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468

Query: 330 GLQYLFVGYNRLQ 342
            LQ +++  N   
Sbjct: 469 SLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 32/214 (14%), Positives = 72/214 (33%), Gaps = 34/214 (15%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
            +P ++    +   L++  N  S    +   +L+ LR L +  N +  + +  F   +++
Sbjct: 14  HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 284 LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
            YL+ S N L   +                                 L++L + +N    
Sbjct: 72  EYLDLSHNKLVK-IS--------------------------CHPTVNLKHLDLSFNAFD- 103

Query: 344 SIPYS--IGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGN 401
           ++P     G++  LK L LS  +L  +  + +  L+  + L +       +        +
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED-PEGLQD 162

Query: 402 FSAESFEGNELLCGSPNLRVPPCKTSTHHTSWKN 435
           F+ ES           +  +     +  +    N
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
            +++L+ L +S N +             +L    +S+N L+    +I     P ++VL +
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---DTIFRCLPPRIKVLDL 428

Query: 67  RSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDL 126
            SN    +IP  +     L  L +  N         F  L +L K+ L+ N    S   +
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487

Query: 127 NFLS 130
           ++LS
Sbjct: 488 DYLS 491

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  118 bits (297), Expect = 2e-28
 Identities = 53/306 (17%), Positives = 106/306 (34%), Gaps = 37/306 (12%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           I   I N  +L      +N + G            +   +   + + ++S +    +   
Sbjct: 3   IMLPINNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
             L++   N   ++P  +    ++++LE+  N+    +P+   +L  L+     +N L++
Sbjct: 62  SELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST 114

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
                      ++ K L   D+ +N L      T +  L   LEY    N  ++  +PE 
Sbjct: 115 ------LPELPASLKHL---DVDNNQL------TMLPELPALLEYINADNNQLTM-LPEL 158

Query: 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTEL----Y 237
            ++L  L    +  N+L   +P     L+ L    ++ N LE S+P    R         
Sbjct: 159 PTSLEVL---SVRNNQLT-FLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEI 210

Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPL 297
                 N+    IP    +L    T+ L  N L+S      + +                
Sbjct: 211 FFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 298 PLEIEN 303
             +   
Sbjct: 270 DGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  113 bits (285), Expect = 5e-27
 Identities = 65/318 (20%), Positives = 112/318 (35%), Gaps = 55/318 (17%)

Query: 74  TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLS 133
           +I   I N   LS      N+ SG   D F       K  L         +    +S L 
Sbjct: 2   SIMLPINNNFSLSQNSF-YNTISGTYADYFSAWDKWEKQALPGE------NRNEAVSLLK 54

Query: 134 NC--KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIII 191
            C     + + L+   L   LP     NL   +    +    +   +PE  ++L  L   
Sbjct: 55  ECLINQFSELQLNRLNLS-SLPD----NLPPQITVLEITQNALIS-LPELPASLEYL--- 105

Query: 192 YLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP 251
               N+L+ ++P   + L+ L    + +N+L   +P     L  +   +  +N+ +  +P
Sbjct: 106 DACDNRLS-TLPELPASLKHLD---VDNNQLT-MLPELPALLEYI---NADNNQLT-MLP 156

Query: 252 ACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGID 311
                  SL  LS+ +N+LT +P    +L+    L+ S+N L   LP             
Sbjct: 157 E---LPTSLEVLSVRNNQLTFLPELPESLEA---LDVSTNLLES-LPAVPVRNHHS---- 205

Query: 312 FSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV 371
                            +   +     NR+   IP +I  L    ++ L +N LS  I  
Sbjct: 206 ----------------EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 372 SLEKLSYLEDLNLSFNKL 389
           SL + +   D +      
Sbjct: 249 SLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 1e-13
 Identities = 53/408 (12%), Positives = 103/408 (25%), Gaps = 111/408 (27%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
            +P    +L  L+      N+L                     ++L             +
Sbjct: 94  SLPELPASLEYLD---ACDNRL---------------------STLPEL--------PAS 121

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L+ L + +N                             +P+    L  +N     NN LT
Sbjct: 122 LKHLDVDNNQLT-------------------------MLPELPALLEYIN---ADNNQLT 153

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
                       ++   L  + + +N L                             +PE
Sbjct: 154 M------LPELPTS---LEVLSVRNNQL---------------------------TFLPE 177

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQ----GLSLADNKLEGSIPNNICRLTEL 236
              +L  L    +  N L  S+P    +    +         +N++   IP NI  L   
Sbjct: 178 LPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296
             + L  N  S S      +  + +    G     S+     N       +  + +    
Sbjct: 233 CTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLK 356
              ++  +      +   N FS  +                 +  +  +   +  L +  
Sbjct: 292 KQSDVSQIWHAFEHEEHANTFSAFL-----DRLSDTVSARNTSGFREQVAAWLEKLSASA 346

Query: 357 SLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSA 404
            L   +  ++     S E    L   NL    L  +   G    +  A
Sbjct: 347 ELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGA 394

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  112 bits (281), Expect = 2e-27
 Identities = 64/310 (20%), Positives = 112/310 (36%), Gaps = 38/310 (12%)

Query: 59  PNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
           P+  +L +++N+    +    F     L  L L +N  S      F  LR L K+ +  N
Sbjct: 54  PDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP-NCNVSG 176
           +L     +L          +L  + + DN +  +  G   G    ++    M  N   + 
Sbjct: 113 HLVEIPPNL-P-------SSLVELRIHDNRIRKVPKGVFSGL--RNMNCIEMGGNPLENS 162

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTE 235
           G      +   L  + +   KL   IP  L   + L  L L  NK++ +I      R ++
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSK 218

Query: 236 LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTG 295
           LY L LG N+         S L +LR L L +N+L+ +P    +LK +  +   +N +T 
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT- 277

Query: 296 PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI--PYSIGDLI 353
                             VN+F  V             + +  N +      P +   + 
Sbjct: 278 ---------------KVGVNDFCPVGFGV--KRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 354 SLKSLNLSNN 363
              ++   N 
Sbjct: 321 DRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  105 bits (264), Expect = 3e-25
 Identities = 68/300 (22%), Positives = 111/300 (37%), Gaps = 51/300 (17%)

Query: 3   PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLE 62
             +   L++L  LVL +NK+   I  K F+                         L  L+
Sbjct: 71  KDDFKGLQHLYALVLVNNKIS-KIHEKAFS------------------------PLRKLQ 105

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS 122
            L +  N+    IP  +   S L  L + DN         F  LRN+N + +  N L +S
Sbjct: 106 KLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 123 TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI 182
             +      L     L Y+ +S+  L GI        L  +L   ++ +  +   I  E 
Sbjct: 163 GFEPGAFDGLK----LNYLRISEAKLTGIPKD-----LPETLNELHLDHNKIQ-AIELED 212

Query: 183 -SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241
               + L  + LG N++      +LS L  L+ L L +NKL   +P  +  L  L  + L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

Query: 242 GSNKFSRSIPA-------CFSNLASLRTLSLGSNELTSI---PLTFWNLKDILYLNFSSN 291
            +N  +  +              A    +SL +N +      P TF  + D L + F + 
Sbjct: 272 HTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  104 bits (262), Expect = 6e-25
 Identities = 70/334 (20%), Positives = 117/334 (35%), Gaps = 77/334 (23%)

Query: 74  TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLS 133
            +P  I      +LL+L +N  S    D F  L++L  + L NN ++          + S
Sbjct: 47  AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-----AFS 99

Query: 134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI-SNLTNLIIIY 192
             + L  + +S N L  I P      L  SL    + +  +   +P+ + S L N+  I 
Sbjct: 100 PLRKLQKLYISKNHLVEIPPN-----LPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIE 153

Query: 193 LGGNKL-NGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP 251
           +GGN L N           KL  L +++ KL   IP ++     L EL L  NK      
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIEL 210

Query: 252 ACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGI 310
                 + L  L LG N++  I   +   L  +  L+  +N L+                
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---------------- 254

Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIP 370
                                             +P  + DL  L+ + L  NN++  + 
Sbjct: 255 ---------------------------------RVPAGLPDLKLLQVVYLHTNNIT-KVG 280

Query: 371 VS-------LEKLSYLEDLNLSFNKLA-GEIPRG 396
           V+         K +Y   ++L  N +   E+   
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.6 bits (246), Expect = 7e-23
 Identities = 65/264 (24%), Positives = 104/264 (39%), Gaps = 44/264 (16%)

Query: 138 LTYIDLSDNPLDGILPGTSV-GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGN 196
           L  +  SD  L       +V   +S       + N ++S    ++   L +L  + L  N
Sbjct: 35  LRVVQCSDLGL------KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88

Query: 197 KLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSN 256
           K++       S L+KLQ L ++ N L   IP N+   + L EL +  N+  +     FS 
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSG 145

Query: 257 LASLRTLSLGSNELTSIPL---TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
           L ++  + +G N L +       F  LK + YL  S   LTG                  
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG------------------ 186

Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIP-YSIGDLISLKSLNLSNNNLSGTIPVS 372
                  IP      + L  L + +N++Q +I    +     L  L L +N +      S
Sbjct: 187 -------IPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 373 LEKLSYLEDLNLSFNKLAGEIPRG 396
           L  L  L +L+L  NKL+  +P G
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 39/198 (19%), Positives = 59/198 (29%), Gaps = 19/198 (9%)

Query: 8   NLRNLELLVLSHNKLVGV-IPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
            LRN+  + +  N L         F+   L    +S   L+     I       L  L +
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT----GIPKDLPETLNELHL 200

Query: 67  RSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
             N     I        SKL  L LG N        +   L  L ++ L NN L+     
Sbjct: 201 DHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR---- 255

Query: 126 LNFLSSLSNCKTLTYIDLSDNPL----DGILPGTSVGNLSHSLEYFYMPNCNVS-GGIPE 180
               + L + K L  + L  N +             G          + N  V    +  
Sbjct: 256 --VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

Query: 181 EI-SNLTNLIIIYLGGNK 197
                +T+ + I  G  K
Sbjct: 314 ATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 259 SLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS 318
            LR +      L ++P       D   L+  +N ++     + + L+ L  +    N  S
Sbjct: 34  HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 319 GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSY 378
            +       L+ LQ L++  N L   IP ++    SL  L + +N +          L  
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 379 LEDLNLSFNKLAGEIPRGGSFGN 401
           +  + +  N L       G+F  
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDG 171

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (284), Expect = 9e-27
 Identities = 75/410 (18%), Positives = 143/410 (34%), Gaps = 24/410 (5%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
             ++LE L +SHN+L   I       ++L+  ++S N             L  L  L + 
Sbjct: 98  FNQDLEYLDVSHNRLQN-ISCCPM--ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 68  SNNFCGTIPHFIFNASKLS--LLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
           +  F   +         LS  LL+L      G   ++     N   + L  +  +  +  
Sbjct: 155 AAKF-RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQ 212

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
           +N   +      L+ I L+D     ++   S      +L    + +   +     ++   
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 186 TNLIII---YLGGNKLNGSIP-----ITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
                +    +    +   I       + + L+ L    + +     S         E+ 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLT-FWNLKDILYLNFSSNFLT-- 294
              L  +        C  + +S   L+   N  T         LK +  L    N L   
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 295 GPLPLEIENLKVLVGIDFSVNNF-SGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLI 353
             + L  +N+  L  +D S+N+  S     T    + +  L +  N L GS+   +    
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP-- 450

Query: 354 SLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFS 403
            +K L+L NN +  +IP  +  L  L++LN++ N+L   +P  G F   +
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD-GVFDRLT 497

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  110 bits (276), Expect = 8e-26
 Identities = 71/376 (18%), Positives = 126/376 (33%), Gaps = 24/376 (6%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
           E GNL  L  L LS  K    +         L    +   S          +++PN  VL
Sbjct: 141 EFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 65  RMRSN-NFCGTIPHFIFNASKLSL----LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL 119
            +  + N   ++   +   +   L    ++L D +    +       R    + +   ++
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM---PNCNVSG 176
            ++      L      + + Y+++ +  +   +          +L+   +    N     
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
                 S    + I  L  +       +          L+   N    S+      L  L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP------LTFWNLKDILYLNFSS 290
             L L  N    +         ++ +L      L S+          W  + IL LN SS
Sbjct: 380 QTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-AESILVLNLSS 437

Query: 291 NFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSI 349
           N LTG +   +   +KVL   D   N     IP  +  L+ LQ L V  N+L+ S+P  +
Sbjct: 438 NMLTGSVFRCLPPKVKVL---DLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492

Query: 350 GD-LISLKSLNLSNNN 364
            D L SL+ + L +N 
Sbjct: 493 FDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.8 bits (194), Expect = 1e-15
 Identities = 59/373 (15%), Positives = 109/373 (29%), Gaps = 29/373 (7%)

Query: 34  STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGD 92
              K   +S NS+S  L       L  L VLR+  N    ++   +F     L  L++  
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSH 109

Query: 93  NSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGIL 152
           N     I      + +L  + L  N          F     N   LT++ LS       L
Sbjct: 110 NRLQN-IS--CCPMASLRHLDLSFNDFDVLPVCKEF----GNLTKLTFLGLSAAKFRQ-L 161

Query: 153 PGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKL 212
               V +L  S     + + ++ GG  E +    N  +++L  +  +         +  L
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 213 QGLSLADNKLEG-------SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS- 264
             L L++ KL         +  + + R   L  + L   + +             R +  
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 265 --------LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNN 316
                       +      +   LK ++  +  +                +     S+++
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 317 FSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL 376
              +      S     +L    N    S+      L  L++L L  N L           
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMT 399

Query: 377 SYLEDLNLSFNKL 389
             +  L      L
Sbjct: 400 KNMSSLETLDVSL 412

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 45/245 (18%), Positives = 95/245 (38%), Gaps = 15/245 (6%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFN-----VSTLKVFEVSNNSLSGSLSSIAGVRLPNLE 62
             R +E L + +  +   I  + F      + +L +  V N                 + 
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMN 332

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS 122
           +  +  ++          + S  + L    N F+  +      L+ L  + L  N L + 
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 123 TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI 182
                   ++    +L  +D+S N L+      +      S+    + +  ++G +   +
Sbjct: 393 FKVALMTKNM---SSLETLDVSLNSLNSHAYDRTCAWAE-SILVLNLSSNMLTGSVFRCL 448

Query: 183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELDL 241
                + ++ L  N++  SIP  ++ LQ LQ L++A N+L+ S+P+ +  RLT L  + L
Sbjct: 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504

Query: 242 GSNKF 246
             N +
Sbjct: 505 HDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 3   PHEIGNLRNLELLVLSHNKL--VGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
                 L+ L+ L+L  N L     +     N+S+L+  +VS NSL+            +
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           + VL + SN   G++   +    K+ +L+L +N     IP    +L+ L ++ + +N L 
Sbjct: 430 ILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK 486

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLD 149
           S               +L YI L DNP D
Sbjct: 487 SVPD-----GVFDRLTSLQYIWLHDNPWD 510

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (274), Expect = 9e-27
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 11/224 (4%)

Query: 74  TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLS 133
           ++P  I   S  + LEL  N         F  L  L K++L +N L+            +
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI-SNLTNLIIIY 192
           +   L Y+DLS N +   +    +G     LE+    + N+       +  +L NLI + 
Sbjct: 79  S---LKYLDLSFNGV-ITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 193 LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTELYELDLGSNKFSRSIP 251
           +       +     + L  L+ L +A N  + +   +I   L  L  LDL   +  +  P
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192

Query: 252 ACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLT 294
             F++L+SL+ L++  N   S+    +  L  +  L++S N + 
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (271), Expect = 2e-26
 Identities = 60/259 (23%), Positives = 95/259 (36%), Gaps = 14/259 (5%)

Query: 139 TYIDLSDNPLDGILPGTSV-GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNK 197
           T I  +   L      TSV   +  S     + +  +          LT L  + L  N 
Sbjct: 10  TEIRCNSKGL------TSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 198 LN--GSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPAC-F 254
           L+  G    +      L+ L L+ N +  ++ +N   L +L  LD   +   +      F
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 255 SNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN-FLTGPLPLEIENLKVLVGIDF 312
            +L +L  L +            F  L  +  L  + N F    LP     L+ L  +D 
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 313 SVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS 372
           S      + PT   SL  LQ L + +N       +    L SL+ L+ S N++  +    
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 373 LEKL-SYLEDLNLSFNKLA 390
           L+   S L  LNL+ N  A
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 2e-25
 Identities = 50/241 (20%), Positives = 98/241 (40%), Gaps = 18/241 (7%)

Query: 59  PNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDN--SFSGFIPDTFGNLRNLNKVTLY 115
            +   L + SN    ++PH +F   ++L+ L L  N  SF G    +     +L  + L 
Sbjct: 28  SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 116 NNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS 175
            N + + +S+   L  L       ++D   + L  +   +   +L  +L Y  + + +  
Sbjct: 87  FNGVITMSSNFLGLEQL------EHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTR 139

Query: 176 GGIPEEI-SNLTNLIIIYLGGNKLNGSI-PITLSKLQKLQGLSLADNKLEGSIPNNI-CR 232
                 I + L++L ++ + GN    +  P   ++L+ L  L L+  +LE  +       
Sbjct: 140 V-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNS 197

Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDIL-YLNFSS 290
           L+ L  L++  N F       +  L SL+ L    N + +       +    L +LN + 
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

Query: 291 N 291
           N
Sbjct: 258 N 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 9/171 (5%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLP 59
            +      L  LE L   H+ L  +    VF ++  L   ++S+        +     L 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLS 150

Query: 60  NLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
           +LEVL+M  N+F       IF     L+ L+L         P  F +L +L  + + +N 
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169
             S  +            +L  +D S N +        + +   SL +  +
Sbjct: 211 FFSLDTF-----PYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 8e-17
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 31/176 (17%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL---TFWNLK 281
           S+P  I   +    L+L SNK        F  L  L  LSL SN L+       + +   
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 282 DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
            + YL+ S N +                           + +    L+ L++L   ++ L
Sbjct: 79  SLKYLDLSFNGVI-------------------------TMSSNFLGLEQLEHLDFQHSNL 113

Query: 342 QGSIPYSI-GDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG 396
           +    +S+   L +L  L++S+ +           LS LE L ++ N         
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  107 bits (270), Expect = 8e-26
 Identities = 60/355 (16%), Positives = 111/355 (31%), Gaps = 62/355 (17%)

Query: 46  LSGSLSSIAGVRLPNLEVLRMRSNNFC-------GTIPHFIFNASKLSLLELGDNSFSGF 98
           + G + S++     N   L    N  C        +IP  +     +  L+L +N  +  
Sbjct: 10  VLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYI 67

Query: 99  IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG 158
                    NL  + L +N + +   D    SSL +   L ++DLS N L  +       
Sbjct: 68  SNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGS---LEHLDLSYNYLSNLSSSW--- 119

Query: 159 NLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIP--ITLSKLQKLQGLS 216
                   F                 L++L  + L GN    ++      S L KLQ L 
Sbjct: 120 --------F---------------KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILR 155

Query: 217 LADNKLEGSIPNNI-CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP- 274
           + +      I       LT L EL++ ++      P    ++ ++  L L   +   +  
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215

Query: 275 LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYL 334
           +       +  L      L                  F  +  S     ++      + +
Sbjct: 216 IFVDVTSSVECLELRDTDLDT----------------FHFSELSTGETNSLIKKFTFRNV 259

Query: 335 FVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
            +    L   +   +  +  L  L  S N L        ++L+ L+ + L  N  
Sbjct: 260 KITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.1 bits (242), Expect = 3e-22
 Identities = 55/265 (20%), Positives = 109/265 (41%), Gaps = 31/265 (11%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
              NL+ LVL+ N +   I    F ++ +L+  ++S N LS +LSS     L +L  L +
Sbjct: 74  RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131

Query: 67  RSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPD-TFGNLRNLNKVTLYNNYLTSSTS 124
             N +       +F+  +KL +L +G+      I    F  L  L ++ +  + L S   
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
                 SL + + ++++ L       +L      +++ S+E                   
Sbjct: 192 K-----SLKSIQNVSHLILHMKQHILLLEI--FVDVTSSVECLE---------------- 228

Query: 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSN 244
           L +  +     ++L+     +L K    + + + D  L   +   + +++ L EL+   N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 245 KFSRSIPA-CFSNLASLRTLSLGSN 268
           +   S+P   F  L SL+ + L +N
Sbjct: 288 QLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 13/199 (6%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
            L +L  L L  N    +  T +F +++ L++  V N      +       L  LE L +
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 67  RSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT----S 121
            +++   +       +   +S L L        +        ++  + L +  L     S
Sbjct: 182 DASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
             S     +SL    T   + ++D  L  ++   +  +    L         +   +P+ 
Sbjct: 241 ELSTGET-NSLIKKFTFRNVKITDESLFQVMKLLNQIS---GLLELEFSRNQLK-SVPDG 295

Query: 182 I-SNLTNLIIIYLGGNKLN 199
           I   LT+L  I+L  N  +
Sbjct: 296 IFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSG----SLSSIAGVRLPNLE 62
           +++N+  L+L   + + ++        S+++  E+ +  L       LS+     L    
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 63  VLRM--RSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
             R    ++     +   +   S L  LE   N         F  L +L K+ L+ N   
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

Query: 121 SSTSDLNFLS 130
            S   +++LS
Sbjct: 315 CSCPRIDYLS 324

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (273), Expect = 9e-26
 Identities = 61/236 (25%), Positives = 91/236 (38%), Gaps = 13/236 (5%)

Query: 59  PNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
            N  +L +  N     I    F +   L +L+L  N         F  L NLN + L++N
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
            LT+  +       LS    L  + L +NP++ I           SL    +        
Sbjct: 123 RLTTIPNGA--FVYLSK---LKELWLRNNPIESIPSYAFNR--IPSLRRLDLGELKRLSY 175

Query: 178 IPEEI-SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
           I E     L+NL  + L    L   IP  L+ L KL  L L+ N L    P +   L  L
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
            +L +  ++        F NL SL  ++L  N LT +P   F  L  +  ++   N
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (264), Expect = 1e-24
 Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 11/253 (4%)

Query: 138 LTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNK 197
            + +      L  + P      +S +     +    +         +L +L I+ L  N 
Sbjct: 45  FSKVICVRKNLREV-PD----GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 198 LNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICR-LTELYELDLGSNKFSRSIPACFSN 256
           +        + L  L  L L DN+L  +IPN     L++L EL L +N         F+ 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 257 LASLRTLSLGS-NELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
           + SLR L LG    L+ I    F  L ++ YLN +   L   +P  +  L  L  +D S 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSG 216

Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLE 374
           N+ S + P +   L  LQ L++  +++Q     +  +L SL  +NL++NNL+        
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 375 KLSYLEDLNLSFN 387
            L +LE ++L  N
Sbjct: 277 PLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (253), Expect = 3e-23
 Identities = 55/244 (22%), Positives = 99/244 (40%), Gaps = 15/244 (6%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTEL 236
           +P+ IS  TN  ++ L  N++      +   L+ L+ L L+ N +  +I       L  L
Sbjct: 58  VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANL 114

Query: 237 YELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSS-NFL 293
             L+L  N+ + +IP   F  L+ L+ L L +N + SIP   F  +  +  L+      L
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 294 TGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL 352
           +  +     E L  L  ++ ++ N   +    +  L  L  L +  N L    P S   L
Sbjct: 174 SY-ISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 353 ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG--GSFGNFSAESFEGN 410
           + L+ L +  + +      + + L  L ++NL+ N L   +P        +        N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

Query: 411 ELLC 414
              C
Sbjct: 290 PWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 11/144 (7%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
            + +L  L L   K +  I    F  +S L+   ++  +L   + ++    L  L+ L +
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP--LIKLDELDL 214

Query: 67  RSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
             N+    I    F     L  L +  +       + F NL++L ++ L +N LT    D
Sbjct: 215 SGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLD 149
           L   + L +   L  I L  NP +
Sbjct: 274 L--FTPLHH---LERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 4   HEIGNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLE 62
             +  L  L+ L LS N L   I    F  +  L+   +  + +   +   A   L +L 
Sbjct: 201 PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV 258

Query: 63  VLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSF 95
            + +  NN    +PH +F     L  + L  N +
Sbjct: 259 EINLAHNNL-TLLPHDLFTPLHHLERIHLHHNPW 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (273), Expect = 1e-25
 Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 13/236 (5%)

Query: 59  PNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
            N   L +  NN    I    F +   L +L+LG NS        F  L +LN + L++N
Sbjct: 75  SNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
           +LT   S       LS    L  + L +NP++ I           SL    +        
Sbjct: 134 WLTVIPSGA--FEYLSK---LRELWLRNNPIESIPSYAFNRV--PSLMRLDLGELKKLEY 186

Query: 178 IPEEI-SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
           I E     L NL  + LG   +   +P  L+ L  L+ L ++ N      P +   L+ L
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
            +L + +++ S      F  LASL  L+L  N L+S+P   F  L+ ++ L+   N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  106 bits (267), Expect = 6e-25
 Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 13/254 (5%)

Query: 138 LTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNK 197
            + +  +   L  + P      +  +  Y  +   N+     +   +L +L ++ LG N 
Sbjct: 56  FSKVVCTRRGLSEV-PQ----GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 198 LNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICR-LTELYELDLGSNKFSRSIPACFSN 256
           +        + L  L  L L DN L   IP+     L++L EL L +N         F+ 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 257 LASLRTLSLGS-NELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
           + SL  L LG   +L  I    F  L ++ YLN     +   +P  +  L  L  ++ S 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSG 227

Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS-L 373
           N+F  + P +   L  L+ L+V  +++      +   L SL  LNL++NNLS ++P    
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF 286

Query: 374 EKLSYLEDLNLSFN 387
             L YL +L+L  N
Sbjct: 287 TPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (255), Expect = 2e-23
 Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 15/244 (6%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTEL 236
           +P+ I   +N   + L  N +      T   L  L+ L L  N +   I       L  L
Sbjct: 69  VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASL 125

Query: 237 YELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSS-NFL 293
             L+L  N  +  IP+  F  L+ LR L L +N + SIP   F  +  ++ L+      L
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184

Query: 294 TGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL 352
              +     E L  L  ++  + N   +    +  L GL+ L +  N      P S   L
Sbjct: 185 EY-ISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 353 ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG--GSFGNFSAESFEGN 410
            SLK L + N+ +S     + + L+ L +LNL+ N L+  +P                 N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

Query: 411 ELLC 414
              C
Sbjct: 301 PWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 41/241 (17%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
           +L +LE+L L  N +   I    F  +++L   E+ +N L+  + S A   L  L  L +
Sbjct: 97  HLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL 154

Query: 67  RSNNFCGTIPHFIFNA-SKLSLLELGD-NSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
           R+N    +IP + FN    L  L+LG+           F  L NL  + L    +     
Sbjct: 155 RNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
               + +L+    L  +++S N    I PG+                             
Sbjct: 211 ----MPNLTPLVGLEELEMSGNHFPEIRPGS--------------------------FHG 240

Query: 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICR-LTELYELDLGS 243
           L++L  +++  ++++         L  L  L+LA N L  S+P+++   L  L EL L  
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299

Query: 244 N 244
           N
Sbjct: 300 N 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 11/144 (7%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
            + +L  L L   K +  I    F  +  LK   +   ++   + ++    L  LE L M
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP--LVGLEELEM 225

Query: 67  RSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
             N+F   I    F   S L  L + ++  S    + F  L +L ++ L +N L+S   D
Sbjct: 226 SGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLD 149
           L   + L     L  + L  NP +
Sbjct: 285 L--FTPLRY---LVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 4   HEIGNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLE 62
             +  L  LE L +S N     I    F  +S+LK   V N+ +S  +   A   L +L 
Sbjct: 212 PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLV 269

Query: 63  VLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSF 95
            L +  NN   ++PH +F     L  L L  N +
Sbjct: 270 ELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 3   PHEIGNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           P     L +L+ L + ++++  +I    F  +++L    +++N+LS SL       L  L
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYL 292

Query: 62  EVLRMRSNNF 71
             L +  N +
Sbjct: 293 VELHLHHNPW 302

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (250), Expect = 1e-23
 Identities = 62/215 (28%), Positives = 84/215 (39%), Gaps = 10/215 (4%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTEL 236
           +P  I        I+L GN+++     +    + L  L L  N L   I       L  L
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 237 YELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLT 294
            +LDL  N   RS+    F  L  L TL L    L  +    F  L  + YL    N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 295 GPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLI 353
             LP +   +L  L  +    N  S V       L  L  L +  NR+    P++  DL 
Sbjct: 143 A-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 354 SLKSLNLSNNNLSGTIPVS-LEKLSYLEDLNLSFN 387
            L +L L  NNLS  +P   L  L  L+ L L+ N
Sbjct: 202 RLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (250), Expect = 1e-23
 Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 15/222 (6%)

Query: 74  TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLS 133
            +P  I   +    + L  N  S     +F   RNL  + L++N L    +     + L+
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA--FTGLA 80

Query: 134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI-SNLTNLIIIY 192
               L  +DLSDN     +   +   L   L   ++  C +   +   +   L  L  +Y
Sbjct: 81  L---LEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQE-LGPGLFRGLAALQYLY 135

Query: 193 LGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNI-CRLTELYELDLGSNKFSRSI 250
           L  N L  ++P  T   L  L  L L  N++  S+P      L  L  L L  N+ +   
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 251 PACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
           P  F +L  L TL L +N L+++P      L+ + YL  + N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 94.7 bits (236), Expect = 9e-22
 Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 6/211 (2%)

Query: 159 NLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLA 218
            +  + +  ++    +S           NL I++L  N L        + L  L+ L L+
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 219 DNKLEGSIPNNI-CRLTELYELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIP-L 275
           DN    S+       L  L+ L L        +    F  LA+L+ L L  N L ++P  
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 276 TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLF 335
           TF +L ++ +L    N ++         L  L  +    N  + V P     L  L  L+
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 336 VGYNRLQGSIPYSI-GDLISLKSLNLSNNNL 365
           +  N L  ++P      L +L+ L L++N  
Sbjct: 208 LFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 6e-20
 Identities = 48/247 (19%), Positives = 79/247 (31%), Gaps = 39/247 (15%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLP 59
            +P  I      + + L  N++   +P   F     L +  + +N L+  + + A   L 
Sbjct: 25  AVPVGI--PAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLA 80

Query: 60  NLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
            LE L +  N    ++    F    +L  L L         P  F  L  L  + L +N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           L +   D        +   LT++ L  N +  +                           
Sbjct: 141 LQALPDDT-----FRDLGNLTHLFLHGNRISSVPERA----------------------- 172

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTELY 237
                 L +L  + L  N++    P     L +L  L L  N L  ++P      L  L 
Sbjct: 173 ---FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQ 228

Query: 238 ELDLGSN 244
            L L  N
Sbjct: 229 YLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
            L  L  L L    L   +   +F  ++ L+   + +N+L  +L       L NL  L +
Sbjct: 103 GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL 160

Query: 67  RSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
             N    ++P   F     L  L L  N  +   P  F +L  L  + L+ N L++  ++
Sbjct: 161 HGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLD 149
                 L+  + L Y+ L+DNP  
Sbjct: 220 A-----LAPLRALQYLRLNDNPWV 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.8 bits (249), Expect = 2e-23
 Identities = 52/292 (17%), Positives = 113/292 (38%), Gaps = 26/292 (8%)

Query: 81  NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY 140
             +    +  G ++ +  +     +L  +  ++ +   +T+       +  +     L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-------IEGVQYLNNLIG 67

Query: 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG 200
           ++L DN +  + P   + NL+  +    +    +       I+ L ++  + L   ++  
Sbjct: 68  LELKDNQITDLAP---LKNLTK-ITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITD 121

Query: 201 SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
             P  L+ L  LQ L L  N++  +I   +  LT L  L +G+ + S  +    +NL+ L
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS-DLTP-LANLSKL 175

Query: 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV 320
            TL    N+++ I     +L +++ ++  +N ++   PL   N   L  +  +    +  
Sbjct: 176 TTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTITNQ 232

Query: 321 IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS 372
                 +L     +           P +I D  +  S NL+ N  S    VS
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.4 bits (248), Expect = 3e-23
 Identities = 52/261 (19%), Positives = 97/261 (37%), Gaps = 19/261 (7%)

Query: 129 LSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNL 188
           +           I    + +   +      +L   +         V+    E +  L NL
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVT---QADLDG-ITTLSAFGTGVTT--IEGVQYLNNL 65

Query: 189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR 248
           I + L  N++    P  L  L K+  L L+ N L     + I  L  +  LDL S + + 
Sbjct: 66  IGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 249 SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV 308
             P   + L++L+ L L  N++T+I      L ++ YL+  +  ++   PL   NL  L 
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTPL--ANLSKLT 176

Query: 309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT 368
            +    N  S + P  + SL  L  + +  N++    P  + +  +L  + L+N  ++  
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232

Query: 369 IPVSLEKLSYLEDLNLSFNKL 389
                  L     +       
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 3e-20
 Identities = 54/314 (17%), Positives = 115/314 (36%), Gaps = 53/314 (16%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
            L N   +    + +   +     ++  +         ++ ++  +    L NL  L + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQY--LNNLIGLEL- 70

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
            +N    +   + N +K++ LEL  N            L+++  + L +  +T       
Sbjct: 71  KDNQITDLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD------ 121

Query: 128 FLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTN 187
            ++ L+    L  + L  N +  I                              ++ LTN
Sbjct: 122 -VTPLAGLSNLQVLYLDLNQITNI----------------------------SPLAGLTN 152

Query: 188 LIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS 247
           L  + +G  +++   P  L+ L KL  L   DNK+   I   +  L  L E+ L +N+ S
Sbjct: 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

Query: 248 RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPL-PLEIENLKV 306
              P   +N ++L  ++L +  +T+ P+ +    +++  N        P+ P  I +   
Sbjct: 209 DVSP--LANTSNLFIVTLTNQTITNQPVFY--NNNLVVPNVVKGPSGAPIAPATISDNGT 264

Query: 307 LVGIDFSVNNFSGV 320
               + + N  S +
Sbjct: 265 YASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.6 bits (207), Expect = 6e-18
 Identities = 49/316 (15%), Positives = 102/316 (32%), Gaps = 50/316 (15%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
             +L  +  L      +  +    V  ++ L   E+ +N ++  L+ +    L  +  L 
Sbjct: 37  QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT-DLAPLKN--LTKITELE 91

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
           +  N         I     +  L+L     +   P     L NL  + L  N +T+    
Sbjct: 92  LSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN---- 143

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
              +S L+    L Y+ + +  +  +                              ++NL
Sbjct: 144 ---ISPLAGLTNLQYLSIGNAQVSDL----------------------------TPLANL 172

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNK 245
           + L  +    NK++   P  L+ L  L  + L +N++    P  +   + L+ + L +  
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228

Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLK 305
            +       +NL     +   S    + P T  +       N + N  +    +      
Sbjct: 229 ITNQPVFYNNNLVVPNVVKGPSGAPIA-PATISDNGTYASPNLTWNLTSFINNVSYT-FN 286

Query: 306 VLVGIDFSVNNFSGVI 321
             V    +   FSG +
Sbjct: 287 QSVTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 22/218 (10%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
            +  L NL  L L  N++  + P K  N++ +   E+S N L  ++S+IAG  L +++ L
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLK-NVSAIAG--LQSIKTL 112

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
            + S       P  +   S L +L L  N  +   P     L NL  +++ N  ++    
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--- 165

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
               L+ L+N   LT +   DN +  I P   + +L  +L   ++ N  +S      ++N
Sbjct: 166 ----LTPLANLSKLTTLKADDNKISDISP---LASLP-NLIEVHLKNNQISD--VSPLAN 215

Query: 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKL 222
            +NL I+ L    +        + L     +       
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 13/218 (5%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTEL 236
           IP+ +    +   + L  N L      +     +LQ L L+  +++ +I +     L+ L
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 237 YELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLT 294
             L L  N    S+    FS L+SL+ L      L S+      +LK +  LN + N + 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 295 G-PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQY----LFVGYNRLQGSIPYSI 349
              LP    NL  L  +D S N    +  T +  L  +      L +  N +   I    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA 196

Query: 350 GDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387
              I LK L L  N L        ++L+ L+ + L  N
Sbjct: 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 56/260 (21%)

Query: 11  NLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSN 69
           + + L LS N L   + +  F +   L+V ++S   +  ++   A   L +L  L +  N
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 70  NFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNF 128
               ++    F+  S L  L   + + +       G+L+ L ++ + +N + S      F
Sbjct: 87  PI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 129 LSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNL 188
            S+L+N   L ++DLS N +  I                              +  L  +
Sbjct: 146 -SNLTN---LEHLDLSSNKIQSIYCTD--------------------------LRVLHQM 175

Query: 189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR 248
            ++ L                     L L+ N +   I     +   L EL L +N+   
Sbjct: 176 PLLNL--------------------SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS 214

Query: 249 SIPACFSNLASLRTLSLGSN 268
                F  L SL+ + L +N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
           +   L++L LS  ++   I    + ++S L    ++ N +  SL+  A   L +L+ L  
Sbjct: 50  SFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 67  RSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFI-PDTFGNLRNLNKVTLYNNYLTS-ST 123
              N   ++ +F   +   L  L +  N    F  P+ F NL NL  + L +N + S   
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 124 SDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI- 182
           +DL  L  +        +DLS NP++ I PG     +   L+   +    +   +P+ I 
Sbjct: 167 TDLRVLHQMPL--LNLSLDLSLNPMNFIQPGA-FKEI--RLKELALDTNQLK-SVPDGIF 220

Query: 183 SNLTNLIIIYLGGN 196
             LT+L  I+L  N
Sbjct: 221 DRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 32/169 (18%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
            IP+N+        LDL  N         F +   L+ L L   E+ +I    + +L  +
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 284 LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
             L  + N +   L L                 FSG        L  LQ L      L  
Sbjct: 79  STLILTGNPIQS-LALGA---------------FSG--------LSSLQKLVAVETNLA- 113

Query: 344 SIP-YSIGDLISLKSLNLSNNNLSGTIPVS--LEKLSYLEDLNLSFNKL 389
           S+  + IG L +LK LN+++N +  +  +      L+ LE L+LS NK+
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 36/157 (22%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 2   IPHEI-GNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGV--R 57
           +       L +L+ LV     L   +      ++ TLK   V++N +  S          
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ-SFKL-PEYFSN 147

Query: 58  LPNLEVLRMRSNNFCGTIPHFIF-NASKLSL----LELGDNSFSGFIPDTFGNLRNLNKV 112
           L NLE L + SN    +I         ++ L    L+L  N  +   P  F  +  L ++
Sbjct: 148 LTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKEL 205

Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLD 149
            L  N L S    +          +L  I L  NP D
Sbjct: 206 ALDTNQLKSVPDGI-----FDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 7   GNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
           G+L+ L+ L ++HN +      + F N++ L+  ++S+N +  S+       L  + +L 
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179

Query: 66  MR---SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS 122
           +    S N    I    F   +L  L L  N         F  L +L K+ L+ N    S
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239

Query: 123 TSDLNFLS 130
              +++LS
Sbjct: 240 CPRIDYLS 247

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.9 bits (228), Expect = 1e-20
 Identities = 60/296 (20%), Positives = 100/296 (33%), Gaps = 30/296 (10%)

Query: 7   GNLRNLELLVLSHN-KLVGVIPTKVFNVSTLKVFEVSNNSLSGSL--SSIAGVRLPNLEV 63
           G  R+LE L+   + +      T +    +LK   V    +   +   ++  + +  L+ 
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 64  LRMRSNNFCGTIPHFIFNASKLSL--LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           L + +    GT P  +  A+   L  L L + S++         L+   K  L    +  
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQ 158

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
           + S       +     L+ +DLSDNP  G         L  +L              P +
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERG------LISAL-------------CPLK 199

Query: 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICR-LTELYELD 240
              L  L +   G    +G      +   +LQGL L+ N L  +     C   ++L  L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 241 LGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296
           L        +P      A L  L L  N L   P     L  +  L+   N     
Sbjct: 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.9 bits (215), Expect = 5e-19
 Identities = 51/303 (16%), Positives = 92/303 (30%), Gaps = 41/303 (13%)

Query: 101 DTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL 160
           + +G  R+L  +    +         + + SLS    L  + +    +   +   ++  L
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS----LKRLTVRAARIPSRILFGALRVL 92

Query: 161 SHS-LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLS------KLQKLQ 213
             S L+   + N  V+G  P  +   T   +  L    ++ +                L+
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 214 GLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP----ACFSNLASLRTLSLGSNE 269
            LS+A           +     L  LDL  N            C     +L+ L+L +  
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 270 LTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS-L 328
           + +       L                          L G+D S N+             
Sbjct: 213 METPSGVCSAL--------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 329 KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
             L  L + +  L+  +P  +     L  L+LS N L    P   E L  + +L+L  N 
Sbjct: 253 SQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNP 307

Query: 389 LAG 391
              
Sbjct: 308 FLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 40/243 (16%), Positives = 68/243 (27%), Gaps = 26/243 (10%)

Query: 172 CNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC 231
           CN S   P+  S    L             + +          L   D + +     +I 
Sbjct: 15  CNFSDPKPDWSSAFNCLGAA---------DVELYGGGRSLEYLLKRVDTEADLGQFTDII 65

Query: 232 RLTELYELDLGSNKFSRSIPACFS---NLASLRTLSLGSNELT---SIPLTFWNLKDILY 285
           +   L  L + + +    I         ++ L+ L+L + E+T     PL      D+  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 286 LNFSSNFLTGPLP----LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
           LN  +            L+      L  +  +  +        +     L  L +  N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 342 QGSIPYSI----GDLISLKSLNLSNNN---LSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
            G              +L+ L L N      SG           L+ L+LS N L     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 395 RGG 397
              
Sbjct: 246 APS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 7/122 (5%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
            P +   L+ L L         GV          L+  ++S+NSL  +  + +      L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLT 120
             L +        +P  +   +KLS+L+L  N       PD    + NL+   L  N   
Sbjct: 256 NSLNLSFTGL-KQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLS---LKGNPFL 309

Query: 121 SS 122
            S
Sbjct: 310 DS 311

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 50/207 (24%), Positives = 77/207 (37%), Gaps = 40/207 (19%)

Query: 88  LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP 147
           L L +N    F   T      L ++ L    LT        L        L  +DLS N 
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-------LQVDGTLPVLGTLDLSHNQ 88

Query: 148 LDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPI-TL 206
           L       S                     +P     L  L ++ +  N+L  S+P+  L
Sbjct: 89  L------QS---------------------LPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 207 SKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELDLGSNKFSRSIPA-CFSNLASLRTLS 264
             L +LQ L L  N+L+ ++P  +     +L +L L +N     +PA   + L +L TL 
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLL 178

Query: 265 LGSNELTSIPLTFWNLKDILYLNFSSN 291
           L  N L +IP  F+    + +     N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.7 bits (215), Expect = 4e-19
 Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 13/192 (6%)

Query: 174 VSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRL 233
           +   +P    + T L   +L  N L      TL    +L  L+L   +L   +  +   L
Sbjct: 25  LPPDLP---KDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDG-TL 76

Query: 234 TELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNF 292
             L  LDL  N+  +S+P     L +L  L +  N LTS+PL     L ++  L    N 
Sbjct: 77  PVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

Query: 293 LTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351
           L   LP  +      L  +  + NN + +    +  L+ L  L +  N L  +IP     
Sbjct: 136 LKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193

Query: 352 LISLKSLNLSNN 363
              L    L  N
Sbjct: 194 SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 10/207 (4%)

Query: 183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG 242
           S + + + +      L  ++P  L K      L L++N L       +   T L +L+L 
Sbjct: 7   SKVASHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEI- 301
             + +  +      L  L TL L  N+L S+PL    L  +  L+ S N LT  LPL   
Sbjct: 64  RAELT-KLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGAL 120

Query: 302 ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD-LISLKSLNL 360
             L  L  +    N    + P  +     L+ L +  N L   +P  + + L +L +L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

Query: 361 SNNNLSGTIPVSLEKLSYLEDLNLSFN 387
             N+L  TIP        L    L  N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 44/244 (18%), Positives = 65/244 (26%), Gaps = 64/244 (26%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
           +P ++   ++  +L LS N L                                      L
Sbjct: 25  LPPDL--PKDTTILHLSENLL-YTFSLATLM------------------------PYTRL 57

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
             L +        +         L  L+L  N     +P     L  L  + +  N LTS
Sbjct: 58  TQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
                  L  L     L  + L  N L  + PG                           
Sbjct: 115 LPLGA--LRGLGE---LQELYLKGNELKTLPPGL-----------L-------------- 144

Query: 182 ISNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
            +    L  + L  N L   +P   L+ L+ L  L L +N L  +IP        L    
Sbjct: 145 -TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 241 LGSN 244
           L  N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 7   GNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
           G L  L  L LSHN+L   +P     +  L V +VS N L+ SL   A   L  L+ L +
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131

Query: 67  RSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
           + N    T+P  +     KL  L L +N+ +         L NL+ + L  N L +    
Sbjct: 132 KGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLD 149
                       L +  L  NP  
Sbjct: 191 FFGSHL------LPFAFLHGNPWL 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.0 bits (233), Expect = 2e-20
 Identities = 43/215 (20%), Positives = 84/215 (39%), Gaps = 15/215 (6%)

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
                    I   L    +     +T ++L  +  +   ++ ++ S+   I  L  + +L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL 299
            L  NK +   P   +NL +L  L L  N++  +  +  +LK +  L+   N ++    L
Sbjct: 71  FLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGL 127

Query: 300 EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLN 359
              +L  L  +    N  + +    +  L  L  L +  N++   I   +  L  L++L 
Sbjct: 128 V--HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLY 181

Query: 360 LSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
           LS N++S      L  L  L+ L L   +   +  
Sbjct: 182 LSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.0 bits (233), Expect = 2e-20
 Identities = 51/285 (17%), Positives = 94/285 (32%), Gaps = 70/285 (24%)

Query: 105 NLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSL 164
                 K  L    +T          + +   ++  I  +++ +  +             
Sbjct: 19  AFAETIKDNLKKKSVTD-------AVTQNELNSIDQIIANNSDIKSV------------- 58

Query: 165 EYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEG 224
                          + I  L N+  ++L GNKL   I   L+ L+ L  L L +NK++ 
Sbjct: 59  ---------------QGIQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK- 100

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDIL 284
            + + +  L +L  L L  N  S  I     +L  L +L LG+N++T I      L  + 
Sbjct: 101 DLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDIT-VLSRLTKLD 156

Query: 285 YLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS 344
            L+   N ++     +I  L                       L  LQ L++  N +   
Sbjct: 157 TLSLEDNQIS-----DIVPLA---------------------GLTKLQNLYLSKNHIS-D 189

Query: 345 IPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
           +  ++  L +L  L L +             L     +  +   L
Sbjct: 190 LR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.0 bits (220), Expect = 7e-19
 Identities = 49/269 (18%), Positives = 90/269 (33%), Gaps = 52/269 (19%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
                    L    +   +      ++++     +N+ +  S+  I    LPN+  L + 
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQY--LPNVTKLFLN 73

Query: 68  SNNFCGTIPHF--IFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
            N     +     + N   L  L L +N           +L+ L  ++L +N ++     
Sbjct: 74  GNK----LTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD---- 123

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
              ++ L +   L  + L +N +  I                              +S L
Sbjct: 124 ---INGLVHLPQLESLYLGNNKITDI----------------------------TVLSRL 152

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNK 245
           T L  + L  N+++  I   L+ L KLQ L L+ N +  S    +  L  L  L+L S +
Sbjct: 153 TKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQE 208

Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIP 274
                    SNL    T+      L +  
Sbjct: 209 CLNKPINHQSNLVVPNTVKNTDGSLVTPE 237

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 5e-15
 Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 34/244 (13%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVST---LKVFEVSNNSLSGSLSSIAGVRLPNLE 62
              L +++ ++ +++ +       V  +     +    ++ N L+  +  +    L NL 
Sbjct: 39  QNELNSIDQIIANNSDI-----KSVQGIQYLPNVTKLFLNGNKLT-DIKPLTN--LKNLG 90

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS 122
            L +  N         + +  KL  L L  N  S        +L  L  + L NN +T  
Sbjct: 91  WLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITD- 145

Query: 123 TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSH--SLEYFYMPNCNVSGGIPE 180
                 ++ LS    L  + L DN +      + +  L+    L+  Y+   ++S     
Sbjct: 146 ------ITVLSRLTKLDTLSLEDNQI------SDIVPLAGLTKLQNLYLSKNHIS--DLR 191

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
            ++ L NL ++ L   +         S L     +   D  L    P  I    +  + +
Sbjct: 192 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPN 249

Query: 241 LGSN 244
           +  +
Sbjct: 250 VKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 5/146 (3%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
           +  L  L+ L L  N++  ++P     ++ L+   +S N +S  L ++AG  L NL+VL 
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS-DLRALAG--LKNLDVLE 203

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
           + S        +   N    + ++  D S       +         V  +    T+  S 
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGI 151
           + +           +      PL  +
Sbjct: 264 IFYQPVTIGKAKARFHGRVTQPLKEV 289

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.9 bits (208), Expect = 7e-19
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 33/210 (15%)

Query: 183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG 242
           S     +   LG +       IT +++  L  ++LA+  +   +   I     + +L + 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTIN 74

Query: 243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIE 302
           +   +   P   S L++L  L +   ++TS  +                         + 
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIP-----------------------NLS 109

Query: 303 NLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSN 362
            L  L  +D S +     I T I +L  +  + + YN     I   +  L  LKSLN+  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168

Query: 363 NNLSGTIPVSLEKLSYLEDLNLSFNKLAGE 392
           + +       +E    L  L      + G+
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 42/222 (18%)

Query: 99  IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG 158
           IPD+    +      L  +    ST+++    + +   +LTYI L++  +  +       
Sbjct: 17  IPDS--TFKAYLNGLLGQS----STANI----TEAQMNSLTYITLANINVTDL------- 59

Query: 159 NLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLA 218
                                  I    N+  + +         P  +S L  L+ L + 
Sbjct: 60  ---------------------TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 219 DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFW 278
              +      N+  LT L  LD+  +    SI    + L  + ++ L  N   +  +   
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 279 NLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV 320
            L ++  LN   + +     +  E+   L  +        G 
Sbjct: 157 TLPELKSLNIQFDGVHDYRGI--EDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 26/196 (13%), Positives = 62/196 (31%), Gaps = 39/196 (19%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
               + +L  + L++  +  +   +      +K   ++N   + + + I+G  L NLE L
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHAT-NYNPISG--LSNLERL 93

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
           R+   +        +   + L+LL++  ++    I      L  +N + L  N   +   
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-- 151

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
               +  L     L  +++  + +                                 I +
Sbjct: 152 ----IMPLKTLPELKSLNIQFDGVHDY----------------------------RGIED 179

Query: 185 LTNLIIIYLGGNKLNG 200
              L  +Y     + G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           +    +  L +L LL +SH+     I TK+  +  +   ++S N     +  +    LP 
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT--LPE 160

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSG 97
           L+ L ++ +         I +  KL+ L     +  G
Sbjct: 161 LKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 39/216 (18%)

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTE 235
            IP   ++   L    L  NKL+        +L KL+ L L DNKL+ ++P  I   L  
Sbjct: 34  NIP---ADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 236 LYELDLGSNKFSRSIPAC-FSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFL 293
           L  L +  NK   ++P   F  L +L  L L  N+L S+P   F +L  + YL+   N L
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 294 TGPLPLEIENLKVLVGIDFSVNNFSGVIPTTI-GSLKGLQYLFVGYNRLQGSIPYSIGD- 351
                                      +P  +   L  L+ L +  N+L+  +P    D 
Sbjct: 146 Q-------------------------SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDK 179

Query: 352 LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387
           L  LK+L L NN L      + + L  L+ L L  N
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 8/175 (4%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
           +IP+NI    +  +LDL SNK S      F  L  LR L L  N+L ++P   F  LK++
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 284 LYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
             L  + N L   LP+ + + L  L  +    N    + P    SL  L YL +GYN LQ
Sbjct: 88  ETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 343 GSIPYSIGD-LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG 396
            S+P  + D L SLK L L NN L      + +KL+ L+ L L  N+L   +P G
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEG 199

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 49/233 (21%)

Query: 60  NLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
           + + L ++SN    ++P   F+  +KL LL L DN         F  L+NL  + + +N 
Sbjct: 38  DTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           L +    +     L N   L  + L  N L  + P             F           
Sbjct: 97  LQALPIGV--FDQLVN---LAELRLDRNQLKSLPPRV-----------F----------- 129

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPNNIC-RLTEL 236
                +LT L  + LG N+L  S+P  +  KL  L+ L L +N+L+  +P     +LTEL
Sbjct: 130 ----DSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTEL 183

Query: 237 YELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPLTFWN--LKDILYL 286
             L L +N+  + +P   F +L  L+ L L  N     P   W+     I+Y+
Sbjct: 184 KTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQEN-----P---WDCTCNGIIYM 227

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFN-VSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
            L  L LL L+ NKL   +P  +F  +  L+   V++N L  +L      +L NL  LR+
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 67  RSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS---- 121
             N    ++P  +F++ +KL+ L LG N         F  L +L ++ LYNN L      
Sbjct: 117 DRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175

Query: 122 --------STSDL--NFLSSLS-----NCKTLTYIDLSDNPLD 149
                    T  L  N L  +      + + L  + L +NP D
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 27/124 (21%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
           +L  L  L L +N+L   +P  VF+                        +L +L+ LR+ 
Sbjct: 131 SLTKLTYLSLGYNELQ-SLPKGVFD------------------------KLTSLKELRLY 165

Query: 68  SNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDL 126
           +N     +P   F   ++L  L+L +N         F +L  L  + L  N    + + +
Sbjct: 166 NNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224

Query: 127 NFLS 130
            +++
Sbjct: 225 IYMA 228

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 84.5 bits (209), Expect = 6e-18
 Identities = 52/285 (18%), Positives = 93/285 (32%), Gaps = 40/285 (14%)

Query: 11  NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN 70
           +  + +   +K+   IP+ +               L   +   A     +LE + +  N+
Sbjct: 10  SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQND 65

Query: 71  FCGTIPHFIF-NASKLSLLEL-GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNF 128
               I   +F N  KL  + +   N+     P+ F NL NL  + + N  +     D++ 
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHK 124

Query: 129 LSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNL 188
           + SL        +D+ DN     +   S   LS      ++    +   I     N T L
Sbjct: 125 IHSLQ----KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQL 179

Query: 189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICR-LTELYELDLGSNKFS 247
             + L  N                       N LE  +PN++    +    LD+   +  
Sbjct: 180 DELNLSDN-----------------------NNLE-ELPNDVFHGASGPVILDISRTRIH 215

Query: 248 RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF 292
                   NL  LR  S     L  +P T   L  ++  + +   
Sbjct: 216 SLPSYGLENLKKLRARST--YNLKKLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 7/216 (3%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CRLTEL 236
           IP ++    N I +     KL        S    L+ + ++ N +   I  ++   L +L
Sbjct: 24  IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 237 YELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNF-L 293
           +E+ +        I    F NL +L+ L + +  +  +P +   +    + L+   N  +
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 141

Query: 294 TGPLPLEIENLKV-LVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL 352
                     L    V +  + N    +  +     +  +      N L+          
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 353 ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
                L++S   +       LE L  L   +    K
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 45/281 (16%), Positives = 82/281 (29%), Gaps = 43/281 (15%)

Query: 88  LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP 147
               ++  +    D   N   L         L           + S    L  I++S N 
Sbjct: 14  FLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKG-----AFSGFGDLEKIEISQND 65

Query: 148 LDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI-SNLTNLIIIYLGGNKLNGSIP-IT 205
           +  ++      NL   L    +   N    I  E   NL NL  + +    +   +P + 
Sbjct: 66  VLEVIEADVFSNL-PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVH 123

Query: 206 LSKLQKLQGLSLADNKLEGSIPNN-ICRLT-ELYELDLGSNKFSRSIPACFSNLASLRTL 263
                +   L + DN    +I  N    L+ E   L L  N       + F+        
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 264 SLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP 322
              +N L  +P   F      + L+ S   +                           +P
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-------------------------SLP 218

Query: 323 TTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNN 363
           +    L+ L+ L          +P ++  L++L   +L+  
Sbjct: 219 S--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 20/157 (12%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVST-LKVFEVSNNSLSGSLSSIAGVRLP-NLEVLR 65
           NL NL+ L++S+  +   +P      S    + ++ +N    ++   + V L     +L 
Sbjct: 102 NLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160

Query: 66  MRSNNFCGTIPHFIFNASKL-SLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS--- 121
           +  N     I +  FN ++L  L    +N+      D F        + +    + S   
Sbjct: 161 LNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 122 ------------STSDLNFLSSLSNCKTLTYIDLSDN 146
                       ST +L  L +L     L    L+  
Sbjct: 220 YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 259 SLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS 318
           S R      +++T IP      ++ + L F    L             L  I+ S N+  
Sbjct: 10  SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 319 GVIPT-TIGSLKGLQYLFV-GYNRLQGSIPYSI-GDLISLKSLNLSNNNLSGTIPVSLEK 375
            VI      +L  L  + +   N L   I      +L +L+ L +SN  +     V    
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 376 LSYLEDLNLSFNKLAGEIPRG 396
                 L++  N     I R 
Sbjct: 127 SLQKVLLDIQDNINIHTIERN 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.8 bits (205), Expect = 9e-18
 Identities = 51/271 (18%), Positives = 97/271 (35%), Gaps = 41/271 (15%)

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
             +  + +  + S          +L    +   +       L+  ++     N ++    
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT---QNELNS-IDQIIANNSDIK--S 60

Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238
            + I  L N+  ++L GNKL    P  L+ L+ L  L L +NK++  + +++  L +L  
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKS 116

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLP 298
           L L  N  S  I     +L  L +L LG+N++T I      L  +  L+   N ++    
Sbjct: 117 LSLEHNGIS-DING-LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS---- 169

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
            +I  L                       L  LQ L++  N +   +  ++  L +L  L
Sbjct: 170 -DIVPLA---------------------GLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVL 205

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
            L +             L     +  +   L
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 53/261 (20%), Positives = 96/261 (36%), Gaps = 30/261 (11%)

Query: 15  LVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGT 74
            +     +  +     F  +      +   S++    +     L +++ +   +++    
Sbjct: 7   TITVPTPIKQIFSDDAF--AETIKDNLKKKSVT-DAVTQNE--LNSIDQIIANNSDI--K 59

Query: 75  IPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSN 134
               I     ++ L L  N  +   P    NL+NL  + L  N +         LSSL +
Sbjct: 60  SVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-------LSSLKD 110

Query: 135 CKTLTYIDLSDNPLDGILPGTSVGNLSH--SLEYFYMPNCNVSGGIPEEISNLTNLIIIY 192
            K L  + L  N +      + +  L H   LE  Y+ N  ++      +S LT L  + 
Sbjct: 111 LKKLKSLSLEHNGI------SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLS 162

Query: 193 LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPA 252
           L  N+++  I   L+ L KLQ L L+ N +   +   +  L  L  L+L S +       
Sbjct: 163 LEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPIN 218

Query: 253 CFSNLASLRTLSLGSNELTSI 273
             SNL    T+      L + 
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 40/219 (18%), Positives = 80/219 (36%), Gaps = 26/219 (11%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
              L +++ ++ +++ +  V    +  +  +    ++ N L+  +  +A   L NL  L 
Sbjct: 42  QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT-DIKPLAN--LKNLGWLF 96

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
           +  N         + +  KL  L L  N  S        +L  L  + L NN +T     
Sbjct: 97  LDENKV--KDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITD---- 148

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSH--SLEYFYMPNCNVSGGIPEEIS 183
              ++ LS    L  + L DN +      + +  L+    L+  Y+   ++S      ++
Sbjct: 149 ---ITVLSRLTKLDTLSLEDNQI------SDIVPLAGLTKLQNLYLSKNHISD--LRALA 197

Query: 184 NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKL 222
            L NL ++ L   +         S L     +   D  L
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 81.1 bits (201), Expect = 5e-17
 Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 479 WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCS-GAFKSFDV 537
            +RFS  EL  A+D FS  N++GRGGFG VYK R+ DG  VAVK      + G    F  
Sbjct: 17  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQT 76

Query: 538 E 538
           E
Sbjct: 77  E 77

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 480 RRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVE 538
            R   ++L  AT+ F    LIG G FG VYK  ++DG +VA+K      S   + F+ E
Sbjct: 27  YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETE 85

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 59/259 (22%)

Query: 34  STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGD 92
            + +  ++    L  ++ S A   LPN+  + +  +     +    F   SK++ +E+ +
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 93  NSFSGFIP-DTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGI 151
                +I  D    L  L  + ++N  L     DL  + S         ++++DNP    
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKVYSTDI---FFILEITDNPYMTS 145

Query: 152 LPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQK 211
           +P  +                            L N                        
Sbjct: 146 IPVNA-------------------------FQGLCNE----------------------- 157

Query: 212 LQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPA-CFSNLAS-LRTLSLGSNE 269
              L L +N    S+       T+L  + L  NK+   I    F  + S    L +    
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 270 LTSIP-LTFWNLKDILYLN 287
           +T++P     +LK+++  N
Sbjct: 217 VTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 32/224 (14%), Positives = 73/224 (32%), Gaps = 36/224 (16%)

Query: 183 SNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNI-CRLTELYELD 240
           S   +   + L    L  +IP    S L  +  + ++ +     + ++    L+++  ++
Sbjct: 28  SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 241 LGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL 299
           + + +    I       L  L+ L + +  L   P                  +      
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP--------------DLTKVYSTDIF 132

Query: 300 EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGL----QYLFVGYNRLQGSIPYSIGDLISL 355
            I        ++ + N +   IP    + +GL      L +  N    S+     +   L
Sbjct: 133 FI--------LEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181

Query: 356 KSLNLSNNNLSGTIPV-SLEKL-SYLEDLNLSFNKLAGEIPRGG 397
            ++ L+ N     I   +   + S    L++S   +   +P  G
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFN--VSTLKVFEVSNNSLSGSLSSIAGVRLPNLEV 63
           + +     +L ++ N  +  IP   F    +     ++ NN  + S+   A      L+ 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA-FNGTKLDA 183

Query: 64  LRMRSNNFCGTIPHFIFN--ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
           + +  N +   I    F    S  SLL++   S +        +L+ L      N +
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL---IARNTW 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 16/211 (7%)

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
                L N +   LG   +  +  ++  +L  +Q  +  ++ ++ S+   +   T L EL
Sbjct: 13  FPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKEL 68

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLP 298
            L  N+ S   P    +L  L  LS+  N L ++  +    L     L   +N L     
Sbjct: 69  HLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRDTDS 123

Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSL 358
           L   +LK L  +    N    ++   +G L  L+ L +  N +  +    +  L  +  +
Sbjct: 124 L--IHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWI 177

Query: 359 NLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
           +L+             +L     +     + 
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 105 NLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSH-- 162
            L N  K  L    +T        L S      +   +  ++ +       S+  +    
Sbjct: 17  GLANAVKQNLGKQSVTD-------LVSQKELSGVQNFNGDNSNI------QSLAGMQFFT 63

Query: 163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKL 222
           +L+  ++ +  +S      + +LT L  + +  N+L     +       L  L L +N+L
Sbjct: 64  NLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNEL 118

Query: 223 EGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKD 282
                +++  L  L  L + +NK   SI      L+ L  L L  NE+T+       LK 
Sbjct: 119 --RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTG-GLTRLKK 173

Query: 283 ILYLNFSSNFLTGPLPLEIENLKVL 307
           + +++ +              L + 
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 29/230 (12%)

Query: 81  NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY 140
             +      LG  S +  +      L  +      N+ + S       L+ +     L  
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS-------LAGMQFFTNLKE 67

Query: 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL--TNLIIIYLGGNKL 198
           + LS N +  +   + + +L+  LE   +    +       ++ +    L  ++L  N+L
Sbjct: 68  LHLSHNQISDL---SPLKDLTK-LEELSVNRNRLK-----NLNGIPSACLSRLFLDNNEL 118

Query: 199 NGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLA 258
                 +L  L+ L+ LS+ +NKL+ SI   +  L++L  LDL  N+ + +     + L 
Sbjct: 119 --RDTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLK 172

Query: 259 SLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPL-PLEIENLKVL 307
            +  + L   +  + P+      ++   N   +     + P  I N    
Sbjct: 173 KVNWIDLTGQKCVNEPVK--YQPELYITNTVKDPDGRWISPYYISNGGSY 220

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 52/289 (17%)

Query: 6   IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
              L N     L    +  ++  K   +S ++ F   N+++  SL+ +      NL+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAGMQF--FTNLKELH 69

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
           + S+N    +   + + +KL  L +  N            L  L    L NN L      
Sbjct: 70  L-SHNQISDLS-PLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELRD---- 120

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL 185
                SL + K L  + + +N L  I                              +  L
Sbjct: 121 ---TDSLIHLKNLEILSIRNNKLKSI----------------------------VMLGFL 149

Query: 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNK 245
           + L ++ L GN++  +    L++L+K+  + L   K    +   +    ELY  +   + 
Sbjct: 150 SKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC---VNEPVKYQPELYITNTVKDP 204

Query: 246 FSRSI-PACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNF 292
             R I P   SN  S     +          +++   + I      + F
Sbjct: 205 DGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIF 253

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 72.8 bits (179), Expect = 7e-15
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELDL 241
             L  L  I    NK+             +  + L  N+LE ++ + +   L  L  L L
Sbjct: 54  KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLML 112

Query: 242 GSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
            SN+ +  +    F  L+S+R LSL  N++T++    F  L  +  LN  +N
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 34/157 (21%)

Query: 114 LYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN 173
           L NN  T   +   F         L  I+ S+N +  I  G            F      
Sbjct: 39  LNNNEFTVLEATGIF----KKLPQLRKINFSNNKITDIEEGA-----------F------ 77

Query: 174 VSGGIPEEISNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNI-C 231
                       + +  I L  N+L  ++       L+ L+ L L  N++   + N+   
Sbjct: 78  ---------EGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI 126

Query: 232 RLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268
            L+ +  L L  N+ +   P  F  L SL TL+L +N
Sbjct: 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTSIPL-TFWNLKD 282
            IP +I + T   EL L +N+F+       F  L  LR ++  +N++T I    F     
Sbjct: 25  KIPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 283 ILYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
           +  +  +SN L   +  ++ + L+ L  +    N  + V   +   L  ++ L +  N++
Sbjct: 83  VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 342 QGSIPYSIGD-LISLKSLNLSNN 363
             ++     D L SL +LNL  N
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 9/141 (6%)

Query: 11  NLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSN 69
               L L++N+   +  T +F  +  L+    SNN ++  +   A      +  + + SN
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 70  NFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNF 128
                + H +F     L  L L  N  +    D+F  L ++  ++LY+N +T+       
Sbjct: 92  RL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-- 148

Query: 129 LSSLSNCKTLTYIDLSDNPLD 149
             +L +   L+ ++L  NP +
Sbjct: 149 FDTLHS---LSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFN-VSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66
            L  L  +  S+NK+   I    F   S +    +++N L  ++       L +L+ L +
Sbjct: 55  KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLML 112

Query: 67  RSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
           RSN     + +  F   S + LL L DN  +   P  F  L +L+ + L  N
Sbjct: 113 RSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 310 IDFSVNNFSGVIPTTI-GSLKGLQYLFVGYNRLQGSIPYSIGD-LISLKSLNLSNNNLSG 367
           +  + N F+ +  T I   L  L+ +    N++   I     +    +  + L++N L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE- 94

Query: 368 TIPVSL-EKLSYLEDLNLSFNKLAGEIPRG 396
            +   + + L  L+ L L  N++   +   
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGND 123

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 33/195 (16%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIP--ITLSKLQKLQGLSLADNKLEGSIPNNI-CRLT 234
           +P+ +   +   ++ L  N L   +    T ++L  L  L L+ N L   I +     + 
Sbjct: 33  VPQSLP--SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 235 ELYELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNF 292
            L  LDL SN    ++    FS+L +L  L L +N +  +    F ++  +  L  S N 
Sbjct: 89  NLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 293 LTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL 352
           ++                 F V             L  L  L +  N+L+      +  L
Sbjct: 148 IS----------------RFPVELIKDG-----NKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 353 ISLK--SLNLSNNNL 365
            +     L L NN L
Sbjct: 187 PAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 35/187 (18%)

Query: 137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGN 196
               +DLS N L  +    +                          + LTNL  + L  N
Sbjct: 40  YTALLDLSHNNLSRLRAEWT----------P---------------TRLTNLHSLLLSHN 74

Query: 197 KLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNICR-LTELYELDLGSNKFSRSIPA-C 253
            LN  I       +  L+ L L+ N L  ++   +   L  L  L L +N     +    
Sbjct: 75  HLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131

Query: 254 FSNLASLRTLSLGSNELTSIP----LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVG 309
           F ++A L+ L L  N+++  P         L  ++ L+ SSN L      +++ L   V 
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 310 IDFSVNN 316
               ++N
Sbjct: 192 NGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 9e-14
 Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 36/179 (20%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTSIP-LTFWNLKD 282
           ++P ++   T    LDL  N  SR       + L +L +L L  N L  I    F  + +
Sbjct: 32  NVPQSLPSYTA--LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 283 ILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
           + YL+ SSN L   L   +               FS         L+ L+ L +  N + 
Sbjct: 90  LRYLDLSSNHLHT-LDEFL---------------FSD--------LQALEVLLLYNNHIV 125

Query: 343 GSIP-YSIGDLISLKSLNLSNNNLSGTIP----VSLEKLSYLEDLNLSFNKLAGEIPRG 396
             +   +  D+  L+ L LS N +S   P        KL  L  L+LS NKL  ++P  
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 6/162 (3%)

Query: 10  RNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRS 68
               LL LSHN L  +        ++ L    +S+N L+  +SS A V +PNL  L + S
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 69  NNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
           N+   T+  F+F +   L +L L +N       + F ++  L K+ L  N ++    +L 
Sbjct: 98  NHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL- 155

Query: 128 FLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169
            +   +    L  +DLS N L  +         +      Y+
Sbjct: 156 -IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 11/150 (7%)

Query: 259 SLRTLSLGSNELTSIPLTFWNL-KDILYLNFSSNFLTGPLPLEI--ENLKVLVGIDFSVN 315
           +   LS    +L ++P    +L      L+ S N L+  L  E     L  L  +  S N
Sbjct: 19  ASNILSCSKQQLPNVPQ---SLPSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHN 74

Query: 316 NFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSI-GDLISLKSLNLSNNNLSGTIPVSLE 374
           + + +       +  L+YL +  N L  ++   +  DL +L+ L L NN++      + E
Sbjct: 75  HLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133

Query: 375 KLSYLEDLNLSFNKLAGEIPRGGSFGNFSA 404
            ++ L+ L LS N+++   P      + + 
Sbjct: 134 DMAQLQKLYLSQNQIS-RFPV-ELIKDGNK 161

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
            P++       I   L    +      T ++L  +  +   ++ ++ S+   I  L  + 
Sbjct: 13  FPDDAF--AETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIK-SVQG-IQYLPNVR 66

Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLT-FWNLKDILYLNFSSNFLTGP 296
            L LG NK    I A    L +L  L L  N+L S+P   F  L ++  L    N L   
Sbjct: 67  YLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS- 123

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD-LISL 355
           LP                    GV       L  L YL + +N+LQ S+P  + D L +L
Sbjct: 124 LP-------------------DGVF----DKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNL 159

Query: 356 KSLNLSNNNLSGTIPVSL-EKLSYLEDLNLSFNKLAGEIPRG 396
             L+LS N L  ++P  + +KL+ L+DL L  N+L   +P G
Sbjct: 160 TELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDG 199

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 58/234 (24%), Positives = 90/234 (38%), Gaps = 60/234 (25%)

Query: 74  TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLS 133
                    + +  +   ++            L N+  + L  N L      ++ L  L+
Sbjct: 33  DAVTQN-ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD----ISALKELT 85

Query: 134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYL 193
           N   LTY+ L+ N L       S+                   G+ ++++NL  L    L
Sbjct: 86  N---LTYLILTGNQL------QSL-----------------PNGVFDKLTNLKEL---VL 116

Query: 194 GGNKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELDLGSNKFSRSIP 251
             N+L  S+P  +  KL  L  L+LA N+L+ S+P  +  +LT L ELDL  N+   S+P
Sbjct: 117 VENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLP 173

Query: 252 A-CFSNLASLRTLSLGSNELTSIPL-TFWNLK-----------------DILYL 286
              F  L  L+ L L  N+L S+P   F  L                   I YL
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 227

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 225 SIPNNI-CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDI 283
             P++      +    +L     +       + L S+  +   ++++ S+      L ++
Sbjct: 12  IFPDDAFAETIKA---NLKKKSVT-DAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNV 65

Query: 284 LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
            YL    N L   +   ++ L  L  +  + N    +       L  L+ L +  N+LQ 
Sbjct: 66  RYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ- 122

Query: 344 SIPYSIGD-LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG 396
           S+P  + D L +L  LNL++N L        +KL+ L +L+LS+N+L   +P G
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 14/146 (9%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFN-VSTLKVFEVSNNSLSGSLSSIAGV--RLPNLEVL 64
            L NL  L+L+ N+L  + P  VF+ ++ LK   +  N L  SL    GV  +L NL  L
Sbjct: 83  ELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQ-SLP--DGVFDKLTNLTYL 138

Query: 65  RMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSST 123
            +  N    ++P  +F+  + L+ L+L  N         F  L  L  + LY N L  S 
Sbjct: 139 NLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SV 196

Query: 124 SDLNFLSSLSNCKTLTYIDLSDNPLD 149
            D  F        +L YI L DNP D
Sbjct: 197 PDGVF----DRLTSLQYIWLHDNPWD 218

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 12/118 (10%)

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTE 235
           GIP +++ L      YL GN+    +P  LS  + L  + L++N++  ++ N     +T+
Sbjct: 28  GIPRDVTEL------YLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 236 LYELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
           L  L L  N+  R IP   F  L SLR LSL  N+++ +P   F +L  + +L   +N
Sbjct: 80  LLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 35/160 (21%), Positives = 56/160 (35%), Gaps = 57/160 (35%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDIL 284
            +P  I R     EL L  N+F+  +P   SN   L  + L +N ++++           
Sbjct: 24  VLPKGIPRDVT--ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS---------- 70

Query: 285 YLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS 344
                                                  +  ++  L  L + YNRL+  
Sbjct: 71  -------------------------------------NQSFSNMTQLLTLILSYNRLR-C 92

Query: 345 IPYSIGD-LISLKSLNLSNNNLSGTIPV----SLEKLSYL 379
           IP    D L SL+ L+L  N++S  +P      L  LS+L
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHL 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 41/190 (21%), Positives = 65/190 (34%), Gaps = 73/190 (38%)

Query: 99  IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG 158
           IP     L       L  N  T    +L+        K LT IDLS+N +  +   +   
Sbjct: 29  IPRDVTELY------LDGNQFTLVPKELSNY------KHLTLIDLSNNRISTLSNQS--- 73

Query: 159 NLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSL 217
                   F               SN+T L+ + L  N+L   IP  T   L+ L+ LSL
Sbjct: 74  --------F---------------SNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSL 109

Query: 218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTF 277
             N +   +P                          F++L++L  L++G+N     P   
Sbjct: 110 HGNDIS-VVPEGA-----------------------FNDLSALSHLAIGAN-----P--- 137

Query: 278 WNLK-DILYL 286
                ++ +L
Sbjct: 138 LYCDCNMQWL 147

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 20/107 (18%)

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
             L +  N F   +P  + N   L+L++L +N  S     +F N+  L  + L  N L  
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 122 ------------STSDL--NFLSSL-----SNCKTLTYIDLSDNPLD 149
                           L  N +S +     ++   L+++ +  NPL 
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 183 SNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNI-CRLTELYELD 240
           S    L  I L  N+++  +       L+ L  L L  NK+   +P ++   L  L  L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 241 LGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
           L +NK +  +    F +L +L  LSL  N+L +I   TF  L+ I  ++ + N
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTE 235
            +PE I+ +       L  N +    P   S  +KL+ + L++N++   +  +    L  
Sbjct: 29  NLPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 236 LYELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFL 293
           L  L L  NK +  +P   F  L SL+ L L +N++  + +  F +L ++  L+   N L
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 294 T 294
            
Sbjct: 141 Q 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 7/142 (4%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
            IP N+       E+ L  N      P  FS    LR + L +N+++ +    F  L+ +
Sbjct: 25  EIPTNLPETIT--EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 284 LYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
             L    N +T  LP  + E L  L  +  + N  + +       L  L  L +  N+LQ
Sbjct: 83  NSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 343 GSIPYSIGD-LISLKSLNLSNN 363
            +I       L ++++++L+ N
Sbjct: 142 -TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 14/143 (9%)

Query: 11  NLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGV--RLPNLEVLRMR 67
            +  + L  N +  VIP   F     L+  ++SNN +S  L+        L +L  L + 
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELA--PDAFQGLRSLNSLVLY 88

Query: 68  SNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDL 126
            N     +P  +F     L LL L  N  +    D F +L NLN ++LY+N L +     
Sbjct: 89  GNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 127 NFLSSLSNCKTLTYIDLSDNPLD 149
              S L     +  + L+ NP  
Sbjct: 148 --FSPLRA---IQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 41/163 (25%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 59  PNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
             +  +R+  N     IP   F    KL  ++L +N  S   PD F  LR+LN + LY N
Sbjct: 32  ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90

Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
            +T     L     L +   L  + L+ N ++ +               F          
Sbjct: 91  KITELPKSL--FEGLFS---LQLLLLNANKINCLRVDA-----------F---------- 124

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADN 220
                 +L NL ++ L  NKL      T S L+ +Q + LA N
Sbjct: 125 -----QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD-LISL 355
           LP  I  +          N    + P      K L+ + +  N++   +       L SL
Sbjct: 30  LPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 356 KSLNLSNNNLSGTIPVSL-EKLSYLEDLNLSFNKLAGEIPRG 396
            SL L  N ++  +P SL E L  L+ L L+ NK+   +   
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 27/110 (24%)

Query: 9   LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRS 68
           LR+L  LVL  NK+   +P  +F                          L +L++L + +
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFE------------------------GLFSLQLLLLNA 113

Query: 69  NNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
           N     +    F     L+LL L DN        TF  LR +  + L  N
Sbjct: 114 NKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.3 bits (174), Expect = 3e-13
 Identities = 37/227 (16%), Positives = 80/227 (35%), Gaps = 11/227 (4%)

Query: 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
                      +  ++L    L+  K    + + +    EL EL+  +     +I     
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 256 NLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVN 315
            L  L          ++  L   +     YL+   +       +       +  +  +  
Sbjct: 394 ALDPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 316 NFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEK 375
           + + +    +  L  + +L + +NRL+ ++P ++  L  L+ L  S+N L   +   +  
Sbjct: 452 DLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVAN 506

Query: 376 LSYLEDLNLSFNKLAG--EIPRGGSFGNFSAESFEGNELLCGSPNLR 420
           L  L++L L  N+L     I    S       + +GN  LC    ++
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.3 bits (174), Expect = 3e-13
 Identities = 48/352 (13%), Positives = 92/352 (26%), Gaps = 41/352 (11%)

Query: 16  VLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTI 75
           +L   +   V+     +     +    +  L+        + + +   L +      G  
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 76  PHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNC 135
                    L    L D          +    +  +  L  +          +    +  
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC------WCRDSATD 348

Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
           + L   +LS      +            LE            +   +  L          
Sbjct: 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
           + L    P+  + L  L+   L +N +            ++  L L     +        
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVL------KMEYADVRVLHLAHKDLTV--LCHLE 460

Query: 256 NLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVN 315
            L  +  L L  N L ++P     L+ +  L  S N L       ++ +           
Sbjct: 461 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-----NVDGV----------- 504

Query: 316 NFSGVIPTTIGSLKGLQYLFVGYNRLQG-SIPYSIGDLISLKSLNLSNNNLS 366
                      +L  LQ L +  NRLQ  +    +     L  LNL  N+L 
Sbjct: 505 ----------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 5   EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVL 64
            +  L  +  L LSHN+L   +P  +  +  L+V + S+N+L  ++  +A   LP L+ L
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVA--NLPRLQEL 513

Query: 65  RMRSNNFCGTIPHF--IFNASKLSLLELGDN 93
            + +N           + +  +L LL L  N
Sbjct: 514 LLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVR-LP 59
            +P  +  LR LE+L  S N L  V    V N+  L+   + NN L    ++I  +   P
Sbjct: 477 ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCP 533

Query: 60  NLEVLRMRSNNFC 72
            L +L ++ N+ C
Sbjct: 534 RLVLLNLQGNSLC 546

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPIT--LSKLQKLQGLSLADNKLEGSIPNNIC-RL 233
            IP   + L       L  N+L   I       +L  L  L L  N+L   I  N     
Sbjct: 26  DIPLHTTEL------LLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGA 77

Query: 234 TELYELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
           + + EL LG NK    I    F  L  L+TL+L  N+++ +   +F +L  +  LN +SN
Sbjct: 78  SHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 40/165 (24%), Positives = 55/165 (33%), Gaps = 52/165 (31%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTSIPLTFWNLKDI 283
            IP +I   T   EL L  N+  R      F  L  L  L L  N+LT I          
Sbjct: 22  EIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--------- 70

Query: 284 LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
                                                          +Q L +G N+++ 
Sbjct: 71  ----------------------------------PNAF----EGASHIQELQLGENKIK- 91

Query: 344 SIPYSIGD-LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387
            I   +   L  LK+LNL +N +S  +P S E L+ L  LNL+ N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 13/125 (10%)

Query: 26  IPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF-NASK 84
           IP             +++N L    S     RLP+L  L ++ N     I    F  AS 
Sbjct: 27  IPL------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASH 79

Query: 85  LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLS 144
           +  L+LG+N         F  L  L  + LY+N ++          S  +  +LT ++L+
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-----GSFEHLNSLTSLNLA 134

Query: 145 DNPLD 149
            NP +
Sbjct: 135 SNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 37/171 (21%), Positives = 56/171 (32%), Gaps = 62/171 (36%)

Query: 99  IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG 158
           IP     L       L +N L   +SD  F   L +   L  ++L  N L GI P     
Sbjct: 27  IPLHTTELL------LNDNELGRISSDGLF-GRLPH---LVKLELKRNQLTGIEPNA--- 73

Query: 159 NLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSL 217
                   F                  +++  + LG NK+   I       L +L+ L+L
Sbjct: 74  --------F---------------EGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNL 109

Query: 218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268
            DN++   +                           F +L SL +L+L SN
Sbjct: 110 YDNQIS-CVMPGS-----------------------FEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 310 IDFSVNNFSGVIPTTI-GSLKGLQYLFVGYNRLQGSIPYSIGD-LISLKSLNLSNNNLSG 367
           +  + N    +    + G L  L  L +  N+L   I  +  +    ++ L L  N +  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 368 TIPVSL-EKLSYLEDLNLSFNKLAGEIPRG 396
            I   +   L  L+ LNL  N+++  +  G
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISC-VMPG 120

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
           S+P+ I   TE  +LDL S   +    A F  L  L  L+L  N+L ++    F +L ++
Sbjct: 28  SVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 284 LYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
             L  ++N L   LPL + ++L  L  +    N    +       L  L+ L +  N+LQ
Sbjct: 86  GTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 343 GSIPYSIGD-LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387
            SIP    D L +L++L+LS N L      + ++L  L+ + L  N
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 55/194 (28%), Positives = 81/194 (41%), Gaps = 37/194 (19%)

Query: 174 VSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNI-CR 232
           V  GIP +   L       L    L      T   L KL  L+L  N+L+ ++   +   
Sbjct: 29  VPSGIPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDD 81

Query: 233 LTELYELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSS 290
           LTEL  L L +N+ + S+P   F +L  L  L LG N+L S+P   F  L  +  L  ++
Sbjct: 82  LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140

Query: 291 NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG 350
           N L   +P                   +G        L  LQ L +  N+LQ S+P+   
Sbjct: 141 NQLQS-IP-------------------AGA----FDKLTNLQTLSLSTNQLQ-SVPHGAF 175

Query: 351 D-LISLKSLNLSNN 363
           D L  L+++ L  N
Sbjct: 176 DRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 57/230 (24%), Positives = 85/230 (36%), Gaps = 71/230 (30%)

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
           E L ++S              +KL+ L L  N         F +L  L  + L NN L S
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
                                         LP                       G+ + 
Sbjct: 98  ------------------------------LP----------------------LGVFDH 105

Query: 182 ISNLTNLIIIYLGGNKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPNNIC-RLTELYEL 239
           ++ L  L   YLGGN+L  S+P  +  +L KL+ L L  N+L+ SIP     +LT L  L
Sbjct: 106 LTQLDKL---YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 240 DLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPLTFWN--LKDILYL 286
            L +N+  +S+P   F  L  L+T++L  N         ++    +ILYL
Sbjct: 161 SLSTNQL-QSVPHGAFDRLGKLQTITLFGN-----Q---FDCSRCEILYL 201

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 42/147 (28%), Positives = 60/147 (40%), Gaps = 16/147 (10%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFN-VSTLKVFEVSNNSLSGSLSSIAGV--RLPNLEVL 64
            L  L  L L +N+L   +   VF+ ++ L    ++NN L+ SL    GV   L  L+ L
Sbjct: 57  GLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLP--LGVFDHLTQLDKL 112

Query: 65  RMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPD-TFGNLRNLNKVTLYNNYLTSS 122
            +   N   ++P  +F   +KL  L L  N     IP   F  L NL  ++L  N L S 
Sbjct: 113 YL-GGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSV 170

Query: 123 TSDLNFLSSLSNCKTLTYIDLSDNPLD 149
                   +      L  I L  N  D
Sbjct: 171 PH-----GAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query: 9   LRNLELLVLSHNKLVGVIPTKVFNVST-LKVFEVSNNSLSGSLSSIAGV--RLPNLEVLR 65
           L  L  L L++N+L   +P  VF+  T L    +  N L  SL   +GV  RL  L+ LR
Sbjct: 82  LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLP--SGVFDRLTKLKELR 137

Query: 66  MRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
           + +N    +IP   F+  + L  L L  N         F  L  L  +TL+ N    S  
Sbjct: 138 LNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196

Query: 125 DLNFLS 130
           ++ +LS
Sbjct: 197 EILYLS 202

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 6e-12
 Identities = 73/413 (17%), Positives = 138/413 (33%), Gaps = 62/413 (15%)

Query: 34  STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNF----CGTIPHFIFNASKLSLLE 89
             ++  ++    LS +  +     L   +V+R+         C  I   +     L+ L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 90  LGDNSFSG----FIPDTFGNL-RNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLS 144
           L  N         +          + K++L N  LT +       S+L    TL  + LS
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA-GCGVLSSTLRTLPTLQELHLS 121

Query: 145 DNPLDGILPGTSVGNLSH-------SLEYFYMPNCNVS----GGIPEEISNLTNLIIIYL 193
           DN L        +  L          LE   +  C++S      +   +    +   + +
Sbjct: 122 DNLLG----DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 194 GGNKLNGSIPITLSKLQK-----LQGLSLADNKLE----GSIPNNICRLTELYELDLGSN 244
             N +N +    L +  K     L+ L L    +       +   +     L EL LGSN
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 245 KFSRS-----IPACFSNLASLRTLSLGSNELTS-----IPLTFWNLKDILYLNFSSNFLT 294
           K          P      + LRTL +    +T+     +       + +  L+ + N L 
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 295 GP-----LPLEIENLKVLVGIDFSVNNFSGV----IPTTIGSLKGLQYLFVGYNRLQGSI 345
                      +E    L  +     +F+        + +   + L  L +  NRL+ + 
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357

Query: 346 PYSIGDLI-----SLKSLNLSNNNLS----GTIPVSLEKLSYLEDLNLSFNKL 389
              +   +      L+ L L++ ++S     ++  +L     L +L+LS N L
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 75/439 (17%), Positives = 136/439 (30%), Gaps = 84/439 (19%)

Query: 9   LRNLELLVLSHNKL----VGVIPTKVFNVSTLKVFEVSNNSLSGS-LSSIA-GVRLPN-- 60
           L+  +++ L    L       I + +     L    + +N L    +  +  G++ P+  
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 61  LEVLRMRSNNF----CGTIPHFIFNASKLSLLELGDNSF--------SGFIPDTFGNLRN 108
           ++ L +++       CG +   +     L  L L DN             + D    L  
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFY 168
           L    L    L++  S     S L        + +S+N ++       V  L   L+   
Sbjct: 147 LQ---LEYCSLSA-ASCEPLASVLRAKPDFKELTVSNNDINE----AGVRVLCQGLK--- 195

Query: 169 MPNCNVSGGIPEEISNLTNLIIIYLGGNKLN----GSIPITLSKLQKLQGLSLADNKLEG 224
                          +   L  + L    +       +   ++    L+ L+L  NKL  
Sbjct: 196 --------------DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 225 SIPNNICR-----LTELYELDLGSNKFS----RSIPACFSNLASLRTLSLGSNELT---- 271
                +C       + L  L +     +      +        SL+ LSL  NEL     
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 272 ---SIPLTFWNLKDILYLNFSSNFLTG----PLPLEIENLKVLVGIDFSVNNF--SGVIP 322
                 L     + +  L   S   T          +   + L+ +  S N    +GV  
Sbjct: 302 RLLCETLLEPGCQ-LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 323 TTIG---SLKGLQYLFVGYNRLQ----GSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEK 375
              G       L+ L++    +      S+  ++    SL+ L+LSNN L     + L +
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420

Query: 376 L-----SYLEDLNLSFNKL 389
                   LE L L     
Sbjct: 421 SVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 46/296 (15%), Positives = 97/296 (32%), Gaps = 51/296 (17%)

Query: 6   IGNLRNLELLVLSHNKL--VGVI---PTKVFNVSTLKVFEVSNNSLSG-SLSSIAGV--R 57
           +    + + L +S+N +   GV         +   L+  ++ +  ++  +   + G+   
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 58  LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
             +L  L + SN                    LGD   +   P        L  + ++  
Sbjct: 226 KASLRELALGSNK-------------------LGDVGMAELCPGLLHPSSRLRTLWIWEC 266

Query: 118 YLTSSTSDLNFLSS-LSNCKTLTYIDLSDNPL--DGILP-GTSVGNLSHSLEYFYMPNCN 173
            +T+       L   L   ++L  + L+ N L  +G      ++      LE  ++ +C+
Sbjct: 267 GITA--KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 174 VSG----GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKL-----QKLQGLSLADNKL-- 222
            +          ++    L+ + +  N+L  +    L +        L+ L LAD  +  
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

Query: 223 EG--SIPNNICRLTELYELDLGSNKFSRSIPACFS-----NLASLRTLSLGSNELT 271
               S+   +     L ELDL +N    +               L  L L     +
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 174 VSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-R 232
           V  GIP     L      YL  N++    P     L  L+ L L  N+L  ++P  +   
Sbjct: 34  VPAGIPTNAQIL------YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDS 86

Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF 292
           LT+L  LDLG+N+ +    A F  L  L+ L +  N+LT +P     L  + +L    N 
Sbjct: 87  LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146

Query: 293 L 293
           L
Sbjct: 147 L 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 61.3 bits (149), Expect = 8e-11
 Identities = 50/202 (24%), Positives = 72/202 (35%), Gaps = 68/202 (33%)

Query: 88  LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP 147
           L L DN  +   P  F +L NL ++ L +N L +                          
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-------------------------- 78

Query: 148 LDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITL- 206
               LP                       G+ + ++ LT L    LG N+L   +P  + 
Sbjct: 79  ----LPV----------------------GVFDSLTQLTVL---DLGTNQLT-VLPSAVF 108

Query: 207 SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLG 266
            +L  L+ L +  NKL   +P  I RLT L  L L  N+        F  L+SL    L 
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167

Query: 267 SNELTSIPLTFWN--LKDILYL 286
            N     P   W+   +DI+YL
Sbjct: 168 GN-----P---WDCECRDIMYL 181

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
           S+P  I    +   L L  N+ ++  P  F +L +L+ L LGSN+L ++P+  F +L  +
Sbjct: 33  SVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 284 LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
             L+  +N LT  LP                   S V       L  L+ LF+  N+L  
Sbjct: 91  TVLDLGTNQLTV-LP-------------------SAVF----DRLVHLKELFMCCNKLT- 125

Query: 344 SIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387
            +P  I  L  L  L L  N L      + ++LS L    L  N
Sbjct: 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 13  ELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGV--RLPNLEVLRMRSNN 70
           ++L L  N++  + P    ++  LK   + +N L  +L    GV   L  L VL + +N 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALP--VGVFDSLTQLTVLDLGTNQ 99

Query: 71  FCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFL 129
               +P  +F+    L  L +  N  +  +P     L +L  + L  N L  S     F 
Sbjct: 100 L-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAF- 155

Query: 130 SSLSNCKTLTYIDLSDNPLD 149
                  +LT+  L  NP D
Sbjct: 156 ---DRLSSLTHAYLFGNPWD 172

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD-LISLKSLNLSNNNLSGTI 369
               N  + + P    SL  L+ L++G N+L  ++P  + D L  L  L+L  N L+  +
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 370 PVSL-EKLSYLEDLNLSFNKLAGEIPRG 396
           P ++ ++L +L++L +  NKL  E+PRG
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRG 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVST-LKVFEVSNNSLSGSLSSIAGV--RLPNLEVL 64
           +L NL+ L L  N+L  + P  VF+  T L V ++  N L+  L   + V  RL +L+ L
Sbjct: 62  SLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLT-VLP--SAVFDRLVHLKEL 117

Query: 65  RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
            M  N     +P  I   + L+ L L  N         F  L +L    L+ N
Sbjct: 118 FMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 480 RRFSYLELCRATDRFSE------NNLIGRGGFGSVYKARIQDGMEVAVK 522
             FS+ EL   T+ F E       N +G GGFG VYK  + +   VAVK
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVK 60

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 11/121 (9%)

Query: 174 VSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-R 232
           V  GIP   + L       L  NKL         KL +L  LSL+ N+++ S+P+ +  +
Sbjct: 22  VPTGIPSSATRL------ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDK 74

Query: 233 LTELYELDLGSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSS 290
           LT+L  L L  NK   S+P   F  L  L+ L+L +N+L S+P   F  L  +  +   +
Sbjct: 75  LTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133

Query: 291 N 291
           N
Sbjct: 134 N 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD-LISLKSLNLSNNNLSGTI 369
           +   N    +       L  L  L +  N++Q S+P  + D L  L  L L  N L  ++
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 370 PVSL-EKLSYLEDLNLSFNKLAGEIPRG 396
           P  + +KL+ L++L L  N+L   +P G
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKS-VPDG 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 184 NLTNLIIIYLGGNKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELDL 241
            LT+L  +YLGGNKL  S+P  + +KL  L  L+L+ N+L+ S+PN +  +LT+L EL L
Sbjct: 50  ELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107

Query: 242 GSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
            +N+   S+P   F  L  L+ L L  N+L S+P   F  L  + Y+    N
Sbjct: 108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 174 VSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-R 232
           V  GIP + + L       L  N L         +L  L  L L  NKL+ S+PN +  +
Sbjct: 22  VPTGIPAQTTYL------DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNK 74

Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
           LT L  L+L +N+        F  L  L+ L+L +N+L S+P
Sbjct: 75  LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 47/149 (31%), Positives = 61/149 (40%), Gaps = 29/149 (19%)

Query: 219 DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TF 277
            ++   S+P  I   T    LDL +N         F  L SL  L LG N+L S+P   F
Sbjct: 15  YSQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72

Query: 278 WNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVG 337
             L  + YLN S+N L   LP                   +GV       L  L+ L + 
Sbjct: 73  NKLTSLTYLNLSTNQLQS-LP-------------------NGV----FDKLTQLKELALN 108

Query: 338 YNRLQGSIPYSIGD-LISLKSLNLSNNNL 365
            N+LQ S+P  + D L  LK L L  N L
Sbjct: 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 27/153 (17%)

Query: 213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS 272
             L L  N L+         LT L +L LG NK        F+ L SL  L+L +N+L S
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 273 IPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGL 331
           +P   F  L  +  L  ++N L   LP                    GV       L  L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQS-LP-------------------DGV----FDKLTQL 126

Query: 332 QYLFVGYNRLQGSIPYSIGD-LISLKSLNLSNN 363
           + L +  N+L+ S+P  + D L SL+ + L +N
Sbjct: 127 KDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 13  ELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGV--RLPNLEVLRMRSNN 70
             L L  N L  +       +++L    +  N L  SL    GV  +L +L  L + +N 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP--NGVFNKLTSLTYLNLSTNQ 87

Query: 71  FCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFL 129
              ++P+ +F+  ++L  L L  N         F  L  L  + LY N L S   D  F 
Sbjct: 88  L-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVF- 144

Query: 130 SSLSNCKTLTYIDLSDNPLD 149
                  +L YI L DNP D
Sbjct: 145 ---DRLTSLQYIWLHDNPWD 161

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD-LISLKSLNLSNNNLSGTI 369
           D   N+   +       L  L  L++G N+LQ S+P  + + L SL  LNLS N L    
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 370 PVSLEKLSYLEDLNLSFNKLAGEIPRG 396
               +KL+ L++L L+ N+L   +P G
Sbjct: 93  NGVFDKLTQLKELALNTNQLQ-SLPDG 118

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 36/183 (19%), Positives = 57/183 (31%), Gaps = 34/183 (18%)

Query: 197 KLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSN 256
           +    +     K++    L      +E  +   +  L     L L +N   + I +  S 
Sbjct: 16  ERKSVVATEAEKVE----LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEK-I-SSLSG 68

Query: 257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLE-IENLKVLVGIDFSVN 315
           + +LR LSLG N +  I         +  L  S N +     L  IE L  L  +  S N
Sbjct: 69  MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS---LSGIEKLVNLRVLYMSNN 125

Query: 316 NFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEK 375
                    I +   +  L                 L  L+ L L+ N L      +   
Sbjct: 126 K--------ITNWGEIDKL---------------AALDKLEDLLLAGNPLYNDYKENNAT 162

Query: 376 LSY 378
             Y
Sbjct: 163 SEY 165

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 32/169 (18%)

Query: 235 ELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFL 293
           E  EL        + + A  S L + + L+L +N +  I  L+   ++++  L+   N +
Sbjct: 26  EKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLI 82

Query: 294 TGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLI 353
                 +IENL  +                       L+ L++ YN++  S+   I  L+
Sbjct: 83  K-----KIENLDAV--------------------ADTLEELWISYNQIA-SLS-GIEKLV 115

Query: 354 SLKSLNLSNNNLSGTIPVS-LEKLSYLEDLNLSFNKLAGEIPRGGSFGN 401
           +L+ L +SNN ++    +  L  L  LEDL L+ N L  +     +   
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPIT----LSKLQKLQGLSLADNKLEGSIPNNICRL 233
           +   +S L     + L  N       I     LS ++ L+ LSL  N ++  I N     
Sbjct: 40  MDATLSTLKACKHLALSTNN------IEKISSLSGMENLRILSLGRNLIK-KIENLDAVA 92

Query: 234 TELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP--LTFWNLKDILYLNFSSN 291
             L EL +  N+ + S+      L +LR L + +N++T+         L  +  L  + N
Sbjct: 93  DTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 32/154 (20%)

Query: 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLI 189
           ++LS  K   ++ LS N ++ I                              +S + NL 
Sbjct: 42  ATLSTLKACKHLALSTNNIEKI----------------------------SSLSGMENLR 73

Query: 190 IIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR- 248
           I+ LG N +   I    +    L+ L ++ N++  S+ + I +L  L  L + +NK +  
Sbjct: 74  ILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNW 130

Query: 249 SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKD 282
                 + L  L  L L  N L +         +
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           ++   +  L+  + L LS N +      K+ ++S ++                      N
Sbjct: 39  KMDATLSTLKACKHLALSTNNI-----EKISSLSGME----------------------N 71

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L +L +  N     I +    A  L  L +  N  +         L NL  + + NN + 
Sbjct: 72  LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKI- 127

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPL 148
              ++   +  L+    L  + L+ NPL
Sbjct: 128 ---TNWGEIDKLAALDKLEDLLLAGNPL 152

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 5e-09
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 3/96 (3%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLP 59
           +  H +    NL  L + + + +  +  +    +  L+   +  + L   ++  A    P
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 60  NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSF 95
            L  L +  N    ++         L  L L  N  
Sbjct: 81  RLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 42  SNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIP 100
           + +    SL  + G    NL  L + +      +         +L  L +  +      P
Sbjct: 16  TRDGALDSLHHLPG--AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 101 DTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLD 149
           D F     L+++ L  N L S +     +  LS    L  + LS NPL 
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKT--VQGLS----LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 7e-08
 Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 1/100 (1%)

Query: 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNN-ICRLTELYELDLGSNKFSRSIPACF 254
                     L   + L  L + + +    +    +  L EL  L +  +      P  F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 255 SNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT 294
                L  L+L  N L S+         +  L  S N L 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 321 IPTTIGSLKGLQYLFVGYNRLQGSIP-YSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYL 379
               +   + L  L++   +    +    +  L  L++L +  + L    P +      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 380 EDLNLSFNKLAGEIPRGGSFGNFSAES--FEGNELLC 414
             LNLSFN L   +    +    S +     GN L C
Sbjct: 83  SRLNLSFNALE-SLSW-KTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPD-TFGNLRNLNKVTLYNNYLT 120
            +   R         H +  A  L+ L + +      +       L  L  +T+  + L 
Sbjct: 12  GLRCTRDGAL--DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGT 155
               D     +      L+ ++LS N L+ +   T
Sbjct: 70  FVAPD-----AFHFTPRLSRLNLSFNALESLSWKT 99

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPT-TIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLK 356
              +   + L  +          +    +  L  L+ L +  + L+   P +      L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 357 SLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
            LNLS N L  ++     +   L++L LS N L
Sbjct: 84  RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE-ISNLTNLIIIYL 193
               + +  + +     L    +    + L   Y+ N      +    +  L  L  + +
Sbjct: 7   PHGSSGLRCTRDGALDSLH--HLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 194 GGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKF 246
             + L   +         +L  L+L+ N LE S+     +   L EL L  N  
Sbjct: 64  VKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 2/59 (3%)

Query: 339 NRLQGSIPYSIGDLISLKSLNLSNNNLSGTIP-VSLEKLSYLEDLNLSFNKLAGEIPRG 396
                   + +    +L  L + N      +    L  L  L +L +  + L   +   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
            + +N      + L G K+   I    + L +   +  +DN++   + +    L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL 286
            + +N+  R        L  L  L L +N L         L D+  L
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV-------ELGDLDPL 109

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLP 298
           + L +    ++  A ++N    R L L   ++  I      L     ++FS N +     
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---K 56

Query: 299 LE-IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ--GSIPYSIGDLISL 355
           L+    L+ L  +  + N    +      +L  L  L +  N L   G +   +  L SL
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSL 115

Query: 356 KSLNLSNN 363
             L +  N
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 34/168 (20%)

Query: 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLI 189
           +  +N      +DL    +        + NL                        L    
Sbjct: 13  AQYTNAVRDRELDLRGYKI------PVIENLGA---------------------TLDQFD 45

Query: 190 IIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR- 248
            I    N++   +      L++L+ L + +N++          L +L EL L +N     
Sbjct: 46  AIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Query: 249 SIPACFSNLASLRTLSLGSNELTSIP----LTFWNLKDILYLNFSSNF 292
                 ++L SL  L +  N +T+         + +  +  L+F    
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 15/119 (12%)

Query: 105 NLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSH-- 162
           N     ++ L    +     +L      +       ID SDN +        +       
Sbjct: 17  NAVRDRELDLRGYKIPV-IENLG-----ATLDQFDAIDFSDNEI------RKLDGFPLLR 64

Query: 163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG-SIPITLSKLQKLQGLSLADN 220
            L+   + N  +          L +L  + L  N L        L+ L+ L  L +  N
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 32/141 (22%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
           N      L L   K+  VI      +      + S+N +          +L    +LR  
Sbjct: 17  NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR---------KLDGFPLLR-- 64

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
                           +L  L + +N            L +L ++ L NN L     +L 
Sbjct: 65  ----------------RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL----VELG 104

Query: 128 FLSSLSNCKTLTYIDLSDNPL 148
            L  L++ K+LTY+ +  NP+
Sbjct: 105 DLDPLASLKSLTYLCILRNPV 125

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 482 FSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVE 538
                L   +       +  RG FG V+KA++     VAVK+F        +S+  E
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFP---IQDKQSWQNE 66

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 482 FSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539
            +  E     D      LIGRG +G+VYK  + D   VAVKVF        ++F  E 
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFS---FANRQNFINEK 56

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 47/290 (16%), Positives = 93/290 (32%), Gaps = 51/290 (17%)

Query: 79  IFNASKLSLLELGDNSFSG----FIPDTFGNLRNLNKVTLYNNYLTSSTSDL-----NFL 129
           +     +  + L  N+       ++ +   + ++L      + +      ++       L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 130 SSLSNCKTLTYIDLSDNPL--DGILPGTSVGNLSHSLEYFYMPNCNVS------------ 175
            +L  C  L  + LSDN        P     +    LE+ Y+ N  +             
Sbjct: 88  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 176 -GGIPEEISNLTNLIIIYLGGNKL--NGSIPI--TLSKLQKLQGLSLADNKL--EGSIPN 228
              + ++  N   L  I  G N+L          T    + L  + +  N +  EG I +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG-IEH 206

Query: 229 NICRL----TELYELDLGSNKFS----RSIPACFSNLASLRTLSLGSNELTSI------- 273
            +        EL  LDL  N F+     ++     +  +LR L L    L++        
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 274 PLTFWNLKDILYLNFSSNFLTGPLPLEI-----ENLKVLVGIDFSVNNFS 318
             +      +  L    N +       +     E +  L+ ++ + N FS
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 49/296 (16%), Positives = 88/296 (29%), Gaps = 70/296 (23%)

Query: 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLI 189
            ++++ K L   + SD     +                          + + +     L 
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRL----------------LLQALLKCPKLH 97

Query: 190 IIYLGGNKL--NGSIPIT--LSKLQKLQGLSLADNKL-------------EGSIPNNICR 232
            + L  N        P+   LSK   L+ L L +N L             E ++      
Sbjct: 98  TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 157

Query: 233 LTELYELDLGSNKFS----RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNF 288
              L  +  G N+      +     F +   L T+ +  N +    +    L + L    
Sbjct: 158 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-LLEGLAYC- 215

Query: 289 SSNFLTGPLPLEIENLKVLVGIDFSVNNFSG----VIPTTIGSLKGLQYLFVGYNRLQGS 344
                        + LKVL   D   N F+      +   + S   L+ L +    L   
Sbjct: 216 -------------QELKVL---DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

Query: 345 IPYSIGDLI------SLKSLNLSNNNLSGTIPVSL-----EKLSYLEDLNLSFNKL 389
              ++ D         L++L L  N +      +L     EK+  L  L L+ N+ 
Sbjct: 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 38/263 (14%), Positives = 85/263 (32%), Gaps = 51/263 (19%)

Query: 178 IPEEISNLTNLIIIYLGGNKLN--GSIPI--TLSKLQKLQGLSLADNKLE---------- 223
           +   +    ++  I L GN +    +  +   ++  + L+    +D              
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 224 GSIPNNICRLTELYELDLGSNKFS----RSIPACFSNLASLRTLSLGSNELT-------- 271
             +   + +  +L+ + L  N F       +    S    L  L L +N L         
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 272 ------SIPLTFWNLKDILYLNFSSNFLTGP----LPLEIENLKVLVGIDFSVNNF---- 317
                 ++     N   +  +    N L            ++ ++L  +    N      
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203

Query: 318 -SGVIPTTIGSLKGLQYLFVGYNRL--QG--SIPYSIGDLISLKSLNLSNNNLS--GTIP 370
              ++   +   + L+ L +  N     G  ++  ++    +L+ L L++  LS  G   
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 371 VS--LEKLS--YLEDLNLSFNKL 389
           V     KL    L+ L L +N++
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 59/292 (20%), Positives = 89/292 (30%), Gaps = 67/292 (22%)

Query: 8   NLRNLELLVLSHNKL--VGVIPTKVF--NVSTLKVFEVSNNSLS-GSLSSIAGVRLPNLE 62
               L  + LS N        P   F    + L+   + NN L   + + IA   L  L 
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQELA 150

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSG----FIPDTFGNLRNLNKVTLYNNY 118
           V +   N               L  +  G N            TF + R L+ V +  N 
Sbjct: 151 VNKKAKNA------------PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
           +     +   L  L+ C+ L  +DL DN        T +G                S  +
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTF------THLG----------------SSAL 236

Query: 179 PEEISNLTNLIIIYLGGNKL--NGSIPI----TLSKLQKLQGLSLADNKLEG-------- 224
              + +  NL  + L    L   G+  +    +  +   LQ L L  N++E         
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296

Query: 225 SIPNNICRLTELYELDLGSNKFS------RSIPACFSNLASLRTLSLGSNEL 270
            I   +  L     L+L  N+FS        I   FS         L   E 
Sbjct: 297 VIDEKMPDLL---FLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 33/104 (31%), Positives = 40/104 (38%), Gaps = 26/104 (25%)

Query: 202 IPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPA-CFSNLASL 260
           IP         Q L L +N++    P     L  L +L   SNK + +IP   F  L  L
Sbjct: 31  IPTDK------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83

Query: 261 RTLSLGSNELTSIPL-TFWNLK-----------------DILYL 286
             L L  N L SIP   F NLK                 DI+YL
Sbjct: 84  TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 38/105 (36%), Positives = 48/105 (45%), Gaps = 28/105 (26%)

Query: 202 IPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELDLGSNKFSRSIPA-CFSNLAS 259
           IP T       Q L L DN++   +   +  RLT+L  LDL +N+ +  +PA  F  L  
Sbjct: 28  IPTTT------QVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79

Query: 260 LRTLSLGSNELTSIPL-TFWNLK-----------------DILYL 286
           L  LSL  N+L SIP   F NLK                 DILYL
Sbjct: 80  LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 94/645 (14%), Positives = 166/645 (25%), Gaps = 230/645 (35%)

Query: 17  LSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSS-----IAGVRLPNLEVLRMRSNNF 71
             +  ++ V       V      +V +      LS      I  +   +  V        
Sbjct: 16  YQYKDILSVFEDAF--VDNFDCKDVQD-MPKSILSKEEIDHI--IMSKD-AVSGTL---- 65

Query: 72  CGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY--LTSSTSDLNFL 129
                  +F     +LL   +     F+ +            L  NY  L S        
Sbjct: 66  ------RLFW----TLLSKQEEMVQKFVEEV-----------LRINYKFLMSPIKTEQRQ 104

Query: 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTN-- 187
            S+    T  YI+  D              L +  + F     NVS    +    L    
Sbjct: 105 PSM---MTRMYIEQRDR-------------LYNDNQVF--AKYNVS--RLQPYLKLRQAL 144

Query: 188 -------LIIIY--LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238
                   ++I   LG  K              +        K++  +   I      + 
Sbjct: 145 LELRPAKNVLIDGVLGSGK------------TWVALDVCLSYKVQCKMDFKI------FW 186

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNE--LTSIPLTFWNLKDIL-YLNFSSNFLTG 295
           L+L +     ++      L      +  S     ++I L   +++  L  L  S  +   
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 296 PLPL-EIENLKVLVGIDF-----------SVNNFSGVIPTTIGSL----KGL-------- 331
            L L  ++N K     +             V +F     TT  SL      L        
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 332 --QYLFVGYNRL-----QGSIPYSIGDLI--SLKS--------LNLSNNNLSGTIPVSLE 374
             +YL      L       + P  +  +I  S++          +++ + L+  I  SL 
Sbjct: 307 LLKYLDCRPQDLPREVLTTN-PRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 375 KLS------YLEDLNLSFNKLAGEIPRG------------------GSFGNFSAESFEGN 410
            L         + L++ F   A  IP                         +S    +  
Sbjct: 365 VLEPAEYRKMFDRLSV-FPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 411 ELLCGSPNL----RVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVILLILRYRKRVKP 466
           E     P++    +V        H S                       ++  Y      
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRS-----------------------IVDHYNIPKTF 459

Query: 467 PPNDANMPPVAT-WRRFSY----LELCRATD------------RFSENNLIGRG----GF 505
             +D   P +   +  +S+    L+     +            RF E  +          
Sbjct: 460 DSDDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517

Query: 506 GSV---------YKARIQD------GMEVAVKVF------HLHCS 529
           GS+         YK  I D       +  A+  F      +L CS
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 78/432 (18%), Positives = 132/432 (30%), Gaps = 118/432 (27%)

Query: 12  LELLVLSHNKLVGVIPTKVF--NV----STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLR 65
           + L V    K+   +  K+F  N+    S   V E+    L   +      R  +   ++
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIK 224

Query: 66  MRSNNFCGTIPHFIFNAS-KLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
           +R ++    +   + +   +  LL L  N  +    + F    NL+   L    LT  T 
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAF----NLSCKIL----LT--TR 273

Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISN 184
                  LS   T T+I L D+    + P      L   L      +C     +P E+  
Sbjct: 274 FKQVTDFLSAATT-THISL-DHHSMTLTPDEVKSLLLKYL------DCRPQD-LPREVLT 324

Query: 185 LTNLIIIYLGGNKLNGSIPIT--------LSKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
                +  +  +  +G    T          KL  +   SL  N LE   P       ++
Sbjct: 325 TNPRRLSIIAESIRDG--LATWDNWKHVNCDKLTTIIESSL--NVLE---PAE---YRKM 374

Query: 237 YELDLGSNKFSRS--IPA--------------CFSNLASLRTLSL---GSNELT-SIPLT 276
           ++  L    F  S  IP                   +  L   SL      E T SIP  
Sbjct: 375 FD-RLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS- 430

Query: 277 FWNLKDILYLNFSSNFLTGPLPLEIENLKVL--VGIDFSVNNFSGVIPTTIGSLKGLQYL 334
                  +YL            +++EN   L    +D   N         +      QY 
Sbjct: 431 -------IYLELK---------VKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYF 473

Query: 335 F--VGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGE 392
           +  +G++               LK++               E+++    + L F  L  +
Sbjct: 474 YSHIGHH---------------LKNIEHP------------ERMTLFRMVFLDFRFLEQK 506

Query: 393 IPRGGSFGNFSA 404
           I    +  N S 
Sbjct: 507 IRHDSTAWNASG 518

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 56/314 (17%), Positives = 101/314 (32%), Gaps = 79/314 (25%)

Query: 1   EIPHEI--GNLRNLELLVLS-HNKLVGVIPTKVFNVSTL-KVFEVSNNSLSGSLS----- 51
           ++P E+   N R L ++  S  + L      K  N   L  + E S N L  +       
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 52  --SI--AGVRLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPD----- 101
             S+      +P   +L +   +   +    + N   K SL+E      +  IP      
Sbjct: 377 RLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 102 --TFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGN 159
                N   L++ ++ ++Y    T D +              DL    LD          
Sbjct: 436 KVKLENEYALHR-SIVDHYNIPKTFDSD--------------DLIPPYLDQ--------- 471

Query: 160 LSHSLEYFY------MPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQ 213
                 YFY      + N        E ++       ++L    L           QK++
Sbjct: 472 ------YFYSHIGHHLKNIEHP----ERMTLFRM---VFLDFRFLE----------QKIR 508

Query: 214 GLSLADNKLEGSIPNNICRLTELYE--LDLGSNKFSRSIPACFSNLASLRTLSLGSNELT 271
             S A N   GSI N + +L + Y+  +     K+ R + A    L  +    + S    
Sbjct: 509 HDSTAWNA-SGSILNTLQQL-KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 272 SIPLTFWNLKDILY 285
            + +      + ++
Sbjct: 567 LLRIALMAEDEAIF 580

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 184 NLTNLIIIYLGGNKLN-GSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG 242
             +++  + L  ++ N G +     + ++L+ LS  +  L  SI  N+ +L +L +L+L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 243 SNKFSRSIPACFSNLASLRTLSLGSNELTSI 273
            N+ S  +        +L  L+L  N++  +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 34/143 (23%)

Query: 8   NLRNLELLVLSHNKL-VGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGV-RLPNLEVLR 65
              +++ LVL +++   G +         L+     N  L+    SIA + +L  L+ L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----SIANLPKLNKLKKL- 69

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
                                  EL DN  SG +        NL  + L  N +     D
Sbjct: 70  -----------------------ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI----KD 102

Query: 126 LNFLSSLSNCKTLTYIDLSDNPL 148
           L+ +  L   + L  +DL +  +
Sbjct: 103 LSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 27/134 (20%)

Query: 232 RLTELYELDLGSNKFSR-SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSS 290
             +++ EL L +++ +   +         L  LS  +  LTSI                +
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----------------A 58

Query: 291 NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG-SIPYSI 349
           N            L  L  ++ S N  SG +         L +L +  N+++  S    +
Sbjct: 59  NL---------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109

Query: 350 GDLISLKSLNLSNN 363
             L +LKSL+L N 
Sbjct: 110 KKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 302 ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLS 361
            ++K LV +D S +N  G +       + L++L      L  SI  ++  L  LK L LS
Sbjct: 17  SDVKELV-LDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELS 72

Query: 362 NNNLSGTIPVSLEKLSYLEDLNLSFNKLA 390
           +N +SG + V  EK   L  LNLS NK+ 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 184 NLTNLIIIYLGGNKLN-GSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG 242
               +  + L   K N G I    ++   L+ LSL +  L  S+ +N+ +L +L +L+L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIE 302
            N+    +      L +L  L+L  N+L         +  +  L             ++E
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-------ISTLEPLK------------KLE 120

Query: 303 NLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYL 334
            LK L   +  V N +    +    L  L YL
Sbjct: 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 26/135 (19%)

Query: 229 NICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNF 288
               + EL  LD   +   + I    +   +L  LSL +  L S+      L  +  L  
Sbjct: 22  TPAAVREL-VLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLEL 78

Query: 289 SSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
           S N + G L +  E L  L  ++ S N         +  +  L+ L              
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNK--------LKDISTLEPL-------------- 116

Query: 349 IGDLISLKSLNLSNN 363
              L  LKSL+L N 
Sbjct: 117 -KKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 34/143 (23%)

Query: 8   NLRNLELLVLSHNKL-VGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGV-RLPNLEVLR 65
               +  LVL + K   G I         L+   + N  L     S++ + +LP L+ L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----SVSNLPKLPKLKKL- 76

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
                                  EL +N   G +      L NL  + L  N L     D
Sbjct: 77  -----------------------ELSENRIFGGLDMLAEKLPNLTHLNLSGNKL----KD 109

Query: 126 LNFLSSLSNCKTLTYIDLSDNPL 148
           ++ L  L   + L  +DL +  +
Sbjct: 110 ISTLEPLKKLECLKSLDLFNCEV 132

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 472 NMPPVATWRRFSYLELCRATD---RFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHL 526
           +M   +  R    ++L    D    F    L+G G +G VYK R ++ G   A+KV  +
Sbjct: 1   SMASDSPARSLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDV 59

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 53/406 (13%), Positives = 122/406 (30%), Gaps = 66/406 (16%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVS----TLKVFEVSNNSLSG----SLSSIAGVRLP 59
           + R ++ L++  +         +  ++    +L+V        +      L +IA     
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR-NCR 220

Query: 60  NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL 119
           +L  +++  +     +  F   A+ L     G  +    +P+ + NL    K+       
Sbjct: 221 SLVSVKV-GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL-- 277

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
            S                +  +DL    L                          +    
Sbjct: 278 -SYMGPNEMPILFPFAAQIRKLDLLYALL-------------------------ETEDHC 311

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
             I    NL ++       +  + +     ++L+ L +     E  + +    +++    
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ---- 367

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELT-----SIPLTFWNLKDILYLNFSSNFLT 294
                   R + A       L  +++  +++T     SI     NL D   +        
Sbjct: 368 --------RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 295 GPLPLE------IENLKVLVGIDFSVN--NFSGVIPTTIGSL-KGLQYLFVGYNRLQ-GS 344
             LPL+      +   K L    F +     + +  + IG     ++++ +GY       
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479

Query: 345 IPYSIGDLISLKSLNLSNNNLS-GTIPVSLEKLSYLEDLNLSFNKL 389
           +        +L+ L +     S   I  ++ KL  L  L +   + 
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 499 LIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           ++G+    +  +A   + G    V V +  
Sbjct: 85  VLGQEDPYAYLEATDQETGESFEVHVPYFT 114

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 473 MPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHL 526
            P  A     S   L +   +      +  G    V+  R ++   + A+KVF +
Sbjct: 45  WPQNAETTVDS--LLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTM 97

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 489 RATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVK 522
           R T  F E   IG G FGSV+K     DG   A+K
Sbjct: 8   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIK 42

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 42/299 (14%), Positives = 91/299 (30%), Gaps = 61/299 (20%)

Query: 132 LSNCKTLTYIDLSDNPL--DGILP-GTSVGNLSHSLEYFYMPNCNVSGGIPEEI-----S 183
            S    +T +DLS N L     +    +  N   S+    +   ++     +E+     +
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 184 NLTNLIIIYLGGNKLNGSIPITLSKL-----QKLQGLSLADNKLEGSIPNNICRL----- 233
              N+  + L GN L+      L K        +  L L  N       +   +      
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 234 TELYELDLGSNKFS----RSIPACFSNL-ASLRTLSLGSNELTSI-------PLTFWNLK 281
             +  L+L  N         +    + + A++ +L+L  N L S         L      
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 282 DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
            +  L+ S+N L                   S    + +  +    +     L +  N L
Sbjct: 198 -VTSLDLSANLLG----------------LKSYAELAYIFSSIPNHVV---SLNLCLNCL 237

Query: 342 QGSIPYSIGDLI----SLKSLNLSNNNLSGTIPV-------SLEKLSYLEDLNLSFNKL 389
            G    ++  L      L+++ L  + +             +   +  +  ++ +  ++
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 50/332 (15%), Positives = 98/332 (29%), Gaps = 73/332 (21%)

Query: 105 NLRNLNKVTLYNNYLTSSTSDLNFLSSL--SNCKTLTYIDLSDNPLDGILPGTSVGNLSH 162
              ++  + L  N L     + + L  +  +    +T ++LS N L       S   L  
Sbjct: 49  TPASVTSLNLSGNSLGFK--NSDELVQILAAIPANVTSLNLSGNFLSYK----SSDELVK 102

Query: 163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKL-----QKLQGLSL 217
           +L                  +    + ++ LG N  +        +        +  L+L
Sbjct: 103 TLA-----------------AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145

Query: 218 ADNKLE--------GSIPNNICRLTELYELDLGSNKFS----RSIPACFSNL-ASLRTLS 264
             N L           +      +  L   +L  N  +      +    +++ AS+ +L 
Sbjct: 146 RGNDLGIKSSDELIQILAAIPANVNSL---NLRGNNLASKNCAELAKFLASIPASVTSLD 202

Query: 265 LGSNELTSIPLTFW------NLKDILYLNFSSNFLTGP----LPLEIENLKVLVGIDFSV 314
           L +N L                  ++ LN   N L GP    L L  ++LK L  +    
Sbjct: 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 315 NNFSGV-------IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLI-----SLKSLNLSN 362
           +    +       +     +++ +  +      +  S    I +LI          +L N
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322

Query: 363 NNLS-----GTIPVSLEKLSYLEDLNLSFNKL 389
             L       T    L     L +   +   L
Sbjct: 323 QCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 7e-05
 Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 14/144 (9%)

Query: 256 NLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVN 315
           ++      +L S E+ S  L    ++DIL  +  +  L     L +       G D  +N
Sbjct: 186 SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN--LEK---LVLYVGVEDYGFDGDMN 240

Query: 316 NFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD---LISLKSLNLSNNNLSGT---- 368
            F  +          L++L +     Q  +     +   L  L+++++S   L+      
Sbjct: 241 VFRPLFSKD--RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298

Query: 369 IPVSLEKLSYLEDLNLSFNKLAGE 392
           +   ++K+ +L+ +N+ +N L+ E
Sbjct: 299 LLDHVDKIKHLKFINMKYNYLSDE 322

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFK 533
             IG+G +G V+  + + G +VAVKVF      ++ 
Sbjct: 43  KQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEEASWF 77

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVE 538
             +G+G +G V++   Q G  VAVK+F    S   KS+  E
Sbjct: 14  ECVGKGRYGEVWRGSWQ-GENVAVKIFS---SRDEKSWFRE 50

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 489 RATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKV 523
           R    F E  ++G+G FG V KAR   D    A+K 
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKK 38

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 486 ELCRATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           EL           ++G+    +  +A   + G    V V +  
Sbjct: 67  ELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFT 109

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFK 533
             IG+G FG V++ + + G EVAVK+F      ++ 
Sbjct: 48  ESIGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWF 82

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 465 KPPPNDANMPPVATWRRFSYL------ELCRATD---RFSENNLIGRGGFGSVYKAR-IQ 514
           +       M P+    R   L      EL    D    FS+   IG G FG+VY AR ++
Sbjct: 18  ENLYFQGAMDPMPAGGRAGSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVR 77

Query: 515 DGMEVAVKVFHL 526
           +   VA+K    
Sbjct: 78  NSEVVAIKKMSY 89

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 500 IGRGGFGSVYKAR-IQDGMEVAVKVFHLHC 528
           IG+GGFG V+K R ++D   VA+K   L  
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGD 56

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 11/247 (4%)

Query: 145 DNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPI 204
           D     + P  +   LS  +  F  P   +   + E  S      +          ++  
Sbjct: 53  DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112

Query: 205 TLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL-GSNKFS-RSIPACFSNLASLRT 262
            LS+  KLQ LSL   +L   I N + + + L  L+L G + FS  ++    S+ + L  
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172

Query: 263 LSLGS-NELTSIPLTFW---NLKDILYLNFS--SNFLT-GPLPLEIENLKVLVGIDFS-V 314
           L+L    + T   +        + I  LN S     L    L   +     LV +D S  
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232

Query: 315 NNFSGVIPTTIGSLKGLQYLFVGY-NRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSL 373
                        L  LQ+L +     +       +G++ +LK+L +      GT+ +  
Sbjct: 233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 292

Query: 374 EKLSYLE 380
           E L +L+
Sbjct: 293 EALPHLQ 299

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 489 RATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKV 523
           R    F E  LIG GGFG V+KA+   DG    +K 
Sbjct: 8   RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKR 43

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 27/179 (15%), Positives = 59/179 (32%), Gaps = 14/179 (7%)

Query: 105 NLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG--TSVGNLSH 162
           + +N   + L +       S     +  + C+ L  +DL ++ +D +     +   +   
Sbjct: 128 SFKNFKVLVLSS---CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184

Query: 163 SLEYFYMPNCNVS---GGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLA- 218
           SL    +           +   ++   NL  + L        +   L +  +L+ L    
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244

Query: 219 -----DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS 272
                   +   +   +    EL  L    +     +PA +S  + L TL+L    + S
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKV 523
            +S    IG GG   V++   +     A+K 
Sbjct: 57  IYSILKQIGSGGSSKVFQVLNEKKQIYAIKY 87

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 488 CRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527
           C  T++      IG G FG V++    D   VA+K+  + 
Sbjct: 16  CLPTEKLQRCEKIGEGVFGEVFQTI-ADHTPVAIKIIAIE 54

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 498 NLIGRGGFGSVYKARIQDGMEVAVKV 523
             IG GG   V++   +     A+K 
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKY 59

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 486 ELCRATD---RFSENNLIGRGGFGSVYKAR-IQDGMEVAVKV 523
            + R  D    +     +G G FG VYKA+  + G   A KV
Sbjct: 10  HVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKV 51

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 498 NLIGRGGFGSVYKARIQDGMEVAVKV 523
             IG GG   V++   +     A+K 
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKY 40

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 497 NNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           +  IGRG F +VYK    +  +EVA       
Sbjct: 31  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDR 62

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 462 KRVKPPPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKAR-IQDGMEVA 520
           +R+ P   D     +    +    E        +    +GRG FG V++ +  Q G + A
Sbjct: 28  QRLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCA 87

Query: 521 VKVFHLHCS 529
           VK   L   
Sbjct: 88  VKKVRLEVF 96

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC 528
            F   +++G G  G++    + D  +VAVK     C
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC 60

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 500 IGRGGFGSVYKARIQDGMEVAVKVFHLHCSGA--FKSFDVEC 539
           +     G ++K R Q G ++ VKV  +        + F+ EC
Sbjct: 18  LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEEC 58

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 489 RATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKV 523
           R    F     +GRGGFG V++A+   D    A+K 
Sbjct: 2   RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKR 37

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 464 VKPPPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVK 522
           ++ PP     P  A      Y  L      F     IGRG F  VY+A  + DG+ VA+K
Sbjct: 8   MQGPPVPQFQPQKALRPDMGYNTL----ANFRIEKKIGRGQFSEVYRAACLLDGVPVALK 63

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHL 526
                    IG G  G V  AR    G +VAVK+  L
Sbjct: 44  RLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDL 80

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHL 526
             +++    IG+G  G+VY A  +  G EVA++  +L
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL 55

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKV 523
            + F++   IG+G FG V+K    +    VA+K+
Sbjct: 21  EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKI 54

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 489 RATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKV 523
                F   + +G G +G V+K R  +DG   AVK 
Sbjct: 54  FFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKR 89

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)

Query: 499 LIGRGGFGSVYKAR-IQDGMEVAVKV 523
           L+G+GGFG+V+    + D ++VA+KV
Sbjct: 38  LLGKGGFGTVFAGHRLTDRLQVAIKV 63

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 489 RATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFK 533
           R    F     +GRGGFG V++A+   D    A+K   L      +
Sbjct: 3   RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAR 48

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVF 524
             +  ++++G+G   +V++ R  + G   A+KVF
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVF 42

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 500 IGRGGFGSVYKARIQDGMEVAVKVFHLHC--SGAFKSFDVECN 540
           IG G FG+V++A    G +VAVK+       +     F  E  
Sbjct: 45  IGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVA 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	540
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	98.13
4aoj_A	329	High affinity nerve growth factor receptor; transf	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.08
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	98.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	97.96
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	97.93
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	97.91
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	97.9
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	97.66
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	97.6
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	97.5
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	97.43
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	97.35
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	97.33
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	97.3
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	97.26
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	97.21
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	97.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.14
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.13
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	97.12
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	97.11
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	97.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.05
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	97.03
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	96.98
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	96.97
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	96.96
3niz_A	311	Rhodanese family protein; structural genomics, str	96.86
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	96.85
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	96.84
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	96.8
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	96.8
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	96.8
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	96.79
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	96.77
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	96.77
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	96.75
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	96.75
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	96.74
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	96.74
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	96.72
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	96.7
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	96.68
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	96.68
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	96.68
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	96.66
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	96.64
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	96.63
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	96.58
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	96.58
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	96.57
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	96.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.56
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	96.56
3soc_A	322	Activin receptor type-2A; structural genomics cons	96.56
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	96.54
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	96.54
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	96.52
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	96.5
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	96.49
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	96.47
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	96.47
3uqc_A	286	Probable conserved transmembrane protein; structur	96.46
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	96.45
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	96.45
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	96.45
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	96.44
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	96.44
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	96.42
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	96.4
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	96.4
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	96.38
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	96.38
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	96.37
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	96.32
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	96.32
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	96.32
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	96.31
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	96.3
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	96.3
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	96.3
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	96.3
3an0_A	340	Dual specificity mitogen-activated protein kinase;	96.29
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	96.29
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	96.25
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	96.25
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	96.25
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	96.24
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	96.23
3ork_A	311	Serine/threonine protein kinase; structural genomi	96.23
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	96.22
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	96.22
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	96.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.21
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	96.2
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	96.18
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	96.17
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	96.16
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	96.15
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	96.14
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	96.14
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	96.14
3aln_A	327	Dual specificity mitogen-activated protein kinase;	96.14
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	96.14
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	96.14
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	96.14
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	96.13
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	96.12
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	96.11
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	96.1
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	96.1
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	96.1
3rp9_A	458	Mitogen-activated protein kinase; structural genom	96.08
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	96.08
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	96.07
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	96.07
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	96.06
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	96.05
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	96.04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	96.02
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	96.01
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	95.98
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	95.98
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	95.98
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	95.97
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	95.95
3pls_A	298	Macrophage-stimulating protein receptor; protein k	95.95
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	95.95
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	95.94
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	95.94
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	95.93
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	95.91
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	95.91
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	95.9
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	95.9
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	95.88
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	95.87
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	95.87
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	95.86
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	95.85
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	95.85
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	95.85
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	95.84
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	95.84
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	95.84
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	95.84
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	95.83
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	95.82
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	95.82
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	95.81
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	95.81
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	95.76
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	95.76
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	95.76
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	95.74
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	95.66
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	95.66
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	95.64
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	95.63
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	95.61
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	95.6
2dyl_A	318	Dual specificity mitogen-activated protein kinase	95.6
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	95.59
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	95.58
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	95.57
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	95.57
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	95.51
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	95.48
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	95.48
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	95.46
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	95.45
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	95.45
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	95.42
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	95.41
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	95.38
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	95.37
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	95.36
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	95.36
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	95.34
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	95.33
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	95.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.31
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	95.27
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	95.25
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	95.15
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	95.14
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	95.12
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	95.05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	94.95
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	94.93
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	94.84
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	94.65
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	94.58
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	94.44
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	94.23
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	93.23
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	91.8
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	89.35
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	84.71
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	84.26
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	83.1
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	81.61

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.2e-56  Score=479.64  Aligned_cols=409  Identities=33%  Similarity=0.545  Sum_probs=320.9

Q ss_pred             CCCCCCEEeccCcccccCCCccccCC-CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcc-ccCCCCC
Q 045304            8 NLRNLELLVLSHNKLVGVIPTKVFNV-STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHF-IFNASKL   85 (540)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L   85 (540)
                      .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..+ ..+++|++|++++|.+++.+|.. +.++++|
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L  345 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGL  345 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence            56777777777777777777776654 777777777777776666665 57777777777777777666655 6777777


Q ss_pred             CEEEccCCcccccCCccccCCC-CCCEEECcCccccCCCCCccccccCCC--CCCCCEEECcCCCCCccCCccccccccc
Q 045304           86 SLLELGDNSFSGFIPDTFGNLR-NLNKVTLYNNYLTSSTSDLNFLSSLSN--CKTLTYIDLSDNPLDGILPGTSVGNLSH  162 (540)
Q Consensus        86 ~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~  162 (540)
                      ++|++++|.+++.+|..+.+++ +|++|++++|.+.+.     ++..+..  +++|+.|++++|.+.+.+| ..++.+ +
T Consensus       346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l-~  418 (768)
T 3rgz_A          346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP-----ILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNC-S  418 (768)
T ss_dssp             CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE-----CCTTTTCSTTCCCCEEECCSSEEEEECC-GGGGGC-T
T ss_pred             CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC-----cChhhhhcccCCccEEECCCCccccccC-HHHhcC-C
Confidence            7777777777777777777666 777777777777654     3344444  6677777777777776666 566666 6


Q ss_pred             cCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcC
Q 045304          163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG  242 (540)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  242 (540)
                      +|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  498 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS  498 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCCCccc---------------------
Q 045304          243 SNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGPLPLE---------------------  300 (540)
Q Consensus       243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------  300 (540)
                      +|++++.+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|++.|.+|..                     
T Consensus       499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~  578 (768)
T 3rgz_A          499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI  578 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred             CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence            777777777777777777777777777765 6777777777777777777776666543                     


Q ss_pred             -------------------------------------------------cccccCcceEEcccceeeecCccccccCCCC
Q 045304          301 -------------------------------------------------IENLKVLVGIDFSVNNFSGVIPTTIGSLKGL  331 (540)
Q Consensus       301 -------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  331 (540)
                                                                       +..++.|+.||+++|+++|.+|..++.++.|
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  658 (768)
T 3rgz_A          579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL  658 (768)
T ss_dssp             ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence                                                             4445778999999999999999999999999


Q ss_pred             cEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCC
Q 045304          332 QYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNE  411 (540)
Q Consensus       332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~  411 (540)
                      +.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.||+++|+++|.+|..+.+.++...++.||+
T Consensus       659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP  738 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred             CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCC
Q 045304          412 LLCGSPNLRVPPCKTS  427 (540)
Q Consensus       412 ~~c~~~~~~~~~~~~~  427 (540)
                      .+||.|.   ++|...
T Consensus       739 ~Lcg~~l---~~C~~~  751 (768)
T 3rgz_A          739 GLCGYPL---PRCDPS  751 (768)
T ss_dssp             EEESTTS---CCCCSC
T ss_pred             hhcCCCC---cCCCCC
Confidence            9999763   367644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3e-52  Score=450.28  Aligned_cols=398  Identities=34%  Similarity=0.536  Sum_probs=304.9

Q ss_pred             cCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC-CC
Q 045304            6 IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA-SK   84 (540)
Q Consensus         6 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~   84 (540)
                      ++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..   .+++|++|++++|.+++.+|..+... ++
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~  295 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDT  295 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred             cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence            788888888888888888778888888888888888888777655543   56666666666666666666655543 66


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCcccccc-CCCCCCCCEEECcCCCCCccCCccccccc---
Q 045304           85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSS-LSNCKTLTYIDLSDNPLDGILPGTSVGNL---  160 (540)
Q Consensus        85 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~l---  160 (540)
                      |++|++++|.+++.+|..|+++++|++|++++|.+.+.     ++.. +..+++|++|++++|.+.+.+| ..+..+   
T Consensus       296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----ip~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~~  369 (768)
T 3rgz_A          296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-----LPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSAS  369 (768)
T ss_dssp             CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-----CCHHHHTTCTTCCEEECCSSEEEECCC-TTHHHHTTT
T ss_pred             CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc-----CCHHHHhcCCCCCEEeCcCCccCcccc-HHHHhhhcC
Confidence            66666666666666666666666666666666655532     2222 4445555555555554444433 222222   


Q ss_pred             -----------------------cccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeee
Q 045304          161 -----------------------SHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSL  217 (540)
Q Consensus       161 -----------------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  217 (540)
                                             .++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus       370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  449 (768)
T 3rgz_A          370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL  449 (768)
T ss_dssp             CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence                                   246777777777777788888888888888888888888888888888888888888


Q ss_pred             eCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCC
Q 045304          218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGP  296 (540)
Q Consensus       218 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~  296 (540)
                      ++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+.
T Consensus       450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  529 (768)
T 3rgz_A          450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN  529 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence            8888888888888888888888888888888888888888889999999888885 788888888999999999999888


Q ss_pred             CccccccccCcceEEcccceeeecCccccc--------------------------------------------------
Q 045304          297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIG--------------------------------------------------  326 (540)
Q Consensus       297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------------------------------  326 (540)
                      +|..+..+++|+.|++++|.++|.+|..+.                                                  
T Consensus       530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  609 (768)
T 3rgz_A          530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST  609 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred             CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence            888888889999999998888877775432                                                  


Q ss_pred             --------------------cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEccc
Q 045304          327 --------------------SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF  386 (540)
Q Consensus       327 --------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~  386 (540)
                                          .+++|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.||+++
T Consensus       610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~  689 (768)
T 3rgz_A          610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS  689 (768)
T ss_dssp             TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence                                246788899999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeCCCC-CCCCCCCcccccCCCC
Q 045304          387 NKLAGEIPRG-GSFGNFSAESFEGNEL  412 (540)
Q Consensus       387 n~l~~~~p~~-~~~~~~~~~~~~~n~~  412 (540)
                      |+++|.+|.. ..+..+...++.+|+.
T Consensus       690 N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          690 NKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             SCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             CcccCcCChHHhCCCCCCEEECcCCcc
Confidence            9999998864 4456677777877764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.4e-47  Score=399.34  Aligned_cols=410  Identities=20%  Similarity=0.199  Sum_probs=285.0

Q ss_pred             CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA   82 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l   82 (540)
                      |.+|+++++|++|+|++|.+++..|.+|+++++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+..++++
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~l~~~~~~~l  128 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKALKHLFFIQTGISSIDFIPLHNQ  128 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT-SSCTTCCEEECTTSCCSCGGGSCCTTC
T ss_pred             hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh-cccccccEeeccccCcccCCcchhccC
Confidence            5567788888888888888877777778888888888888887774444443 677777777777777776555666677


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCC--------------------------CCCc----------
Q 045304           83 SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS--------------------------TSDL----------  126 (540)
Q Consensus        83 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------------~~~~----------  126 (540)
                      ++|++|++++|.+.+.....+..+++|++|++++|.+++.                          ....          
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~  208 (606)
T 3t6q_A          129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN  208 (606)
T ss_dssp             TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence            7777777777766654333344466666666666554432                          1100          


Q ss_pred             -----------------------------------------------------------c-ccccCCCCCCCCEEECcCC
Q 045304          127 -----------------------------------------------------------N-FLSSLSNCKTLTYIDLSDN  146 (540)
Q Consensus       127 -----------------------------------------------------------~-~~~~l~~l~~L~~L~l~~n  146 (540)
                                                                                 . .+..+..+++|++|++++|
T Consensus       209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  288 (606)
T 3t6q_A          209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT  288 (606)
T ss_dssp             CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred             cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence                                                                       0 0011444556666666666


Q ss_pred             CCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCc-cccCCCCCCeeeeeCccccCc
Q 045304          147 PLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGS  225 (540)
Q Consensus       147 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~  225 (540)
                      .+. .+| ..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.
T Consensus       289 ~l~-~lp-~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  365 (606)
T 3t6q_A          289 HLS-ELP-SGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS  365 (606)
T ss_dssp             CCS-CCC-SSCCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccC-CCC-hhhccc-ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence            555 233 334444 5666666666666655555666666666666666666544443 366667777777777776654


Q ss_pred             C--CccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC-Cc-cccCCCCCcEEECCCCcccCCCcccc
Q 045304          226 I--PNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PL-TFWNLKDILYLNFSSNFLTGPLPLEI  301 (540)
Q Consensus       226 ~--p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-p~-~~~~l~~L~~L~L~~n~l~~~~~~~~  301 (540)
                      .  +..+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+++. |. .+..+++|++|++++|.+.+..|..+
T Consensus       366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  445 (606)
T 3t6q_A          366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF  445 (606)
T ss_dssp             EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred             cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence            4  55677777777777777777777777777778888888888877763 33 46777888888888888887777788


Q ss_pred             ccccCcceEEcccceeeec---CccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCC
Q 045304          302 ENLKVLVGIDFSVNNFSGV---IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSY  378 (540)
Q Consensus       302 ~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  378 (540)
                      ..+++|++|++++|.+++.   .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..++.
T Consensus       446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  525 (606)
T 3t6q_A          446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG  525 (606)
T ss_dssp             TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred             hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence            8888888888888888763   2356778888888888888888888888888888888888888888888888888888


Q ss_pred             CCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCCC
Q 045304          379 LEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGSP  417 (540)
Q Consensus       379 L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~  417 (540)
                      | .+++++|++++..|.. ..+..+...++.+||+.|.|+
T Consensus       526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            8 8888888888665542 335567788889999888764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.1e-48  Score=406.39  Aligned_cols=349  Identities=22%  Similarity=0.292  Sum_probs=202.1

Q ss_pred             CCccccCCCCCCEEEcccCcCccc-----------------cchhhhc--CCCCCCEEEccCCcccccCCccccCCCCCC
Q 045304           26 IPTKVFNVSTLKVFEVSNNSLSGS-----------------LSSIAGV--RLPNLEVLRMRSNNFCGTIPHFIFNASKLS   86 (540)
Q Consensus        26 ~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~   86 (540)
                      +|..++++++|++|+|++|.+++.                 +|..+ .  ++++|++|++++|.+.+.+|..++++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            555566666666666666666653                 55554 3  566666666666666666666666666666


Q ss_pred             EEEccCCc-ccc-cCCccccCC------CCCCEEECcCccccCCCCCccccc--cCCCCCCCCEEECcCCCCCccCCccc
Q 045304           87 LLELGDNS-FSG-FIPDTFGNL------RNLNKVTLYNNYLTSSTSDLNFLS--SLSNCKTLTYIDLSDNPLDGILPGTS  156 (540)
Q Consensus        87 ~L~L~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~  156 (540)
                      +|++++|. +++ .+|..++.+      ++|++|++++|.++.      +|.  .+.++++|++|++++|.+.|.+|  .
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~------ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~  348 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT------FPVETSLQKMKKLGMLECLYNQLEGKLP--A  348 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS------CCCHHHHTTCTTCCEEECCSCCCEEECC--C
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc------cCchhhhccCCCCCEEeCcCCcCccchh--h
Confidence            66666665 555 555555544      566666666666552      444  45566666666666666665555  4


Q ss_pred             cccccccCcEEEccCCcceecCChhccCCCC-CCeeeccCCccccccCccccCCC--CCCeeeeeCccccCcCCcccc--
Q 045304          157 VGNLSHSLEYFYMPNCNVSGGIPEEISNLTN-LIIIYLGGNKLNGSIPITLSKLQ--KLQGLSLADNKLEGSIPNNIC--  231 (540)
Q Consensus       157 ~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p~~~~--  231 (540)
                      ++.+ ++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++  +|+.|++++|.+.+.+|..+.  
T Consensus       349 ~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          349 FGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            4444 45666666666665 55555666666 666666666665 4555554433  566666666666665555555  


Q ss_pred             -----CCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCC--------CCCcEEECCCCcccCCCc
Q 045304          232 -----RLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNL--------KDILYLNFSSNFLTGPLP  298 (540)
Q Consensus       232 -----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l--------~~L~~L~L~~n~l~~~~~  298 (540)
                           .+++|++|++++|.++...+..+..+++|+.|++++|.++.+|......        ++|++|+|++|++. .+|
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  504 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS  504 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred             ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence                 5556666666666665333333444566666666666666555433221        15666666666665 455


Q ss_pred             cccc--cccCcceEEcccceeeecCccccccCCCCcEEeC------cCccCcccCCcccCCCCCCCEEECCCCcCccccC
Q 045304          299 LEIE--NLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV------GYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIP  370 (540)
Q Consensus       299 ~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  370 (540)
                      ..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++      ++|.+.+.+|..+..+++|+.|++++|++ +.+|
T Consensus       505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip  582 (636)
T 4eco_A          505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN  582 (636)
T ss_dssp             GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence            5554  56666666666666665 5555556666666666      33455555666666666666666666666 3555


Q ss_pred             ccccCCCCCCeEEcccCccee
Q 045304          371 VSLEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       371 ~~~~~~~~L~~l~l~~n~l~~  391 (540)
                      ..+.  ++|+.|++++|++..
T Consensus       583 ~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          583 EKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             SCCC--TTCCEEECCSCTTCE
T ss_pred             HhHh--CcCCEEECcCCCCcc
Confidence            5443  556666666665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.8e-47  Score=403.71  Aligned_cols=389  Identities=18%  Similarity=0.265  Sum_probs=347.1

Q ss_pred             CCCCEEeccCcccccCCCccccCCCCCCEEEcccCc--------------------------------------------
Q 045304           10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNS--------------------------------------------   45 (540)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--------------------------------------------   45 (540)
                      .+++.|+|+++++.|.+|.+++++++|++|+|++|.                                            
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            478999999999999999999999999999999884                                            


Q ss_pred             ----------------------------------CccccchhhhcCCCCCCEEEccCCccccc-----------------
Q 045304           46 ----------------------------------LSGSLSSIAGVRLPNLEVLRMRSNNFCGT-----------------   74 (540)
Q Consensus        46 ----------------------------------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------   74 (540)
                                                        ++| +|..+ .++++|++|+|++|.+++.                 
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhccc
Confidence                                              344 77765 7899999999999999986                 


Q ss_pred             CCcccc--CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCcc-ccC-CCCCccccccCCCC------CCCCEEECc
Q 045304           75 IPHFIF--NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY-LTS-STSDLNFLSSLSNC------KTLTYIDLS  144 (540)
Q Consensus        75 ~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~l~~l------~~L~~L~l~  144 (540)
                      +|..++  ++++|++|++++|.+.+.+|..|+++++|++|++++|. +++ .     +|..+..+      ++|++|+++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~-----lp~~~~~L~~~~~l~~L~~L~L~  313 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ-----LKDDWQALADAPVGEKIQIIYIG  313 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH-----HHHHHHHHHHSGGGGTCCEEECC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcccc-----chHHHHhhhccccCCCCCEEECC
Confidence            999999  99999999999999999999999999999999999998 775 3     55556554      999999999


Q ss_pred             CCCCCccCCcc--ccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCC-CCeeeeeCcc
Q 045304          145 DNPLDGILPGT--SVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQK-LQGLSLADNK  221 (540)
Q Consensus       145 ~n~l~~~~~~~--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~  221 (540)
                      +|.+. .+| .  .++.+ ++|++|++++|.+.|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.
T Consensus       314 ~n~l~-~ip-~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          314 YNNLK-TFP-VETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             SSCCS-SCC-CHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred             CCcCC-ccC-chhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence            99999 677 5  78888 799999999999999999 8999999999999999999 88888999999 9999999999


Q ss_pred             ccCcCCccccCCC--CCCeEEcCCCCCccccCccCC-------CCCCCCEeeCCCCCCCCCCccc-cCCCCCcEEECCCC
Q 045304          222 LEGSIPNNICRLT--ELYELDLGSNKFSRSIPACFS-------NLASLRTLSLGSNELTSIPLTF-WNLKDILYLNFSSN  291 (540)
Q Consensus       222 ~~~~~p~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~ip~~~-~~l~~L~~L~L~~n  291 (540)
                      ++ .+|..+..++  +|++|++++|.+++.+|..|.       .+++|+.|++++|.++.+|..+ ..+++|++|+|++|
T Consensus       389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred             Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence            99 7888887765  899999999999999999888       7889999999999999998864 46899999999999


Q ss_pred             cccCCCccc-cccc-------cCcceEEcccceeeecCccccc--cCCCCcEEeCcCccCcccCCcccCCCCCCCEEEC-
Q 045304          292 FLTGPLPLE-IENL-------KVLVGIDFSVNNFSGVIPTTIG--SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNL-  360 (540)
Q Consensus       292 ~l~~~~~~~-~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-  360 (540)
                      .+. .+|.. +...       ++|+.|++++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++ 
T Consensus       468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             CCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence            999 55544 3332       39999999999999 6888886  99999999999999997 8999999999999999 


Q ss_pred             -----CCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCC
Q 045304          361 -----SNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS  416 (540)
Q Consensus       361 -----~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~  416 (540)
                           ++|++.+.+|..+..+++|+.|++++|++ +.+|.. ....+..+++.+|+..|-.
T Consensus       545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred             CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence                 56888999999999999999999999999 788876 3478888999999887743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=410.61  Aligned_cols=410  Identities=21%  Similarity=0.226  Sum_probs=254.7

Q ss_pred             CcccCCCCCCCEEeccCcccccCC-CccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcc--c
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVI-PTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHF--I   79 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l   79 (540)
                      |.+|+++++|++|+|++|...+.+ |..|.++++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..|..  +
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCccc
Confidence            344555555555555555433333 4455555555555555555553333333 45555555555555555433333  5


Q ss_pred             cCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECcCccccCCCCCc---------------------cccccCCCCC-
Q 045304           80 FNASKLSLLELGDNSFSGFIP-DTFGNLRNLNKVTLYNNYLTSSTSDL---------------------NFLSSLSNCK-  136 (540)
Q Consensus        80 ~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~---------------------~~~~~l~~l~-  136 (540)
                      .++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+.....                     ..+..+..++ 
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~  199 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN  199 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence            555555555555555554433 34555555555555555554321100                     0001111111 


Q ss_pred             -----CCCEEECcCCCCCccCCccccc-----------------------------------c-ccccCcEEEccCCcce
Q 045304          137 -----TLTYIDLSDNPLDGILPGTSVG-----------------------------------N-LSHSLEYFYMPNCNVS  175 (540)
Q Consensus       137 -----~L~~L~l~~n~l~~~~~~~~~~-----------------------------------~-l~~~L~~L~l~~~~~~  175 (540)
                           .|+.|++++|.+.+..+.....                                   . ...+|+.|++++|.+.
T Consensus       200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~  279 (844)
T 3j0a_A          200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF  279 (844)
T ss_dssp             TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred             ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence                 1555555555444332211000                                   0 0135677777777777


Q ss_pred             ecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCC
Q 045304          176 GGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS  255 (540)
Q Consensus       176 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  255 (540)
                      +..|..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..|.
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  359 (844)
T 3j0a_A          280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK  359 (844)
T ss_dssp             EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred             ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence            66677777777777777777777777777777777777777777777766677777777777777777777766666777


Q ss_pred             CCCCCCEeeCCCCCCCCCCc-----------------------------------------cccCCCCCcEEECCCCccc
Q 045304          256 NLASLRTLSLGSNELTSIPL-----------------------------------------TFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       256 ~l~~L~~L~l~~n~l~~ip~-----------------------------------------~~~~l~~L~~L~L~~n~l~  294 (540)
                      .+++|+.|++++|.++.++.                                         .+..+++|++|+|++|++.
T Consensus       360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  439 (844)
T 3j0a_A          360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS  439 (844)
T ss_dssp             SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence            77777777777776665432                                         0113445555555555554


Q ss_pred             CCCcc-ccccccCcceEEcccceee-----ecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304          295 GPLPL-EIENLKVLVGIDFSVNNFS-----GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT  368 (540)
Q Consensus       295 ~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  368 (540)
                      +..+. .+..+++|+.|++++|.++     +..+..|..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.
T Consensus       440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  519 (844)
T 3j0a_A          440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL  519 (844)
T ss_dssp             CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred             ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence            33222 2334556666666666665     33345677888999999999999988888899999999999999999977


Q ss_pred             cCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC
Q 045304          369 IPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP  417 (540)
Q Consensus       369 ~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~  417 (540)
                      .+..+.  ++|+.|++++|++++..|.  .+..+...++.+||+.|+|+
T Consensus       520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          520 SHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             CCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSS
T ss_pred             Chhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccccc
Confidence            776665  7899999999999988775  36688889999999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.4e-46  Score=392.74  Aligned_cols=405  Identities=21%  Similarity=0.217  Sum_probs=298.3

Q ss_pred             CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304            2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN   81 (540)
Q Consensus         2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~   81 (540)
                      +|..+.  ++|++|+|++|.+++..+..|.++++|++|++++|.++ .+++..+.++++|++|++++|.+++..|..|++
T Consensus        26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence            565554  67888888888888777778888888888888888887 444444478888888888888888777888888


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304           82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS  161 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  161 (540)
                      +++|++|++++|.+++..+..++++++|++|++++|.+.+..    +|..+.++++|++|++++|.+.+..+ ..++.+.
T Consensus       103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~  177 (606)
T 3vq2_A          103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK----LPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLR  177 (606)
T ss_dssp             CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC----CCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHH
T ss_pred             cccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee----chHhHhhcCCCCEEEccCCcceecCh-hhhhhhh
Confidence            888888888888888777677888888888888888877531    56678888888888888888776654 3332220


Q ss_pred             --------------------------ccCcEEEccCCccee---------------------------------------
Q 045304          162 --------------------------HSLEYFYMPNCNVSG---------------------------------------  176 (540)
Q Consensus       162 --------------------------~~L~~L~l~~~~~~~---------------------------------------  176 (540)
                                                .+|++|++++|.+.+                                       
T Consensus       178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~  257 (606)
T 3vq2_A          178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG  257 (606)
T ss_dssp             HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred             ccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhh
Confidence                                      134444444443320                                       


Q ss_pred             -------------------cCCh---------------------hccCCCCCCeeeccCCccccccCc------------
Q 045304          177 -------------------GIPE---------------------EISNLTNLIIIYLGGNKLNGSIPI------------  204 (540)
Q Consensus       177 -------------------~~~~---------------------~l~~l~~L~~L~l~~n~l~~~~~~------------  204 (540)
                                         .+|.                     .+..+++|++|++++|.+ +.+|.            
T Consensus       258 l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~  336 (606)
T 3vq2_A          258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLT  336 (606)
T ss_dssp             GGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEE
T ss_pred             hhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeecc
Confidence                               0000                     223333445555555544 23331            


Q ss_pred             --------cccCCCCCCeeeeeCccccCc--CCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC
Q 045304          205 --------TLSKLQKLQGLSLADNKLEGS--IPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP  274 (540)
Q Consensus       205 --------~l~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip  274 (540)
                              .+..+++|++|++++|.+++.  +|..+..+++|++|++++|.+++ +|..|..+++|+.|++++|.+.+++
T Consensus       337 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~  415 (606)
T 3vq2_A          337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT  415 (606)
T ss_dssp             SCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTT
T ss_pred             CCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCcc
Confidence                    233445555556666655544  35666777777777777777664 4577788888888888888888743


Q ss_pred             --ccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee-cCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304          275 --LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG-VIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD  351 (540)
Q Consensus       275 --~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  351 (540)
                        ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+..
T Consensus       416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  495 (606)
T 3vq2_A          416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT  495 (606)
T ss_dssp             TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc
Confidence              367788888999999998888888888889999999999999987 47888889999999999999999888888999


Q ss_pred             CCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC-CCCC-CCCcccccCCCCCCCCC
Q 045304          352 LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFG-NFSAESFEGNELLCGSP  417 (540)
Q Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~-~~~~~~~~~n~~~c~~~  417 (540)
                      +++|++|++++|++++..|..+..+++|+.|++++|+++ .+|.. ..+. ++...++.+|++.|+|+
T Consensus       496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999999999999999888999999999999999999988 45543 2333 47788899999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.8e-45  Score=388.81  Aligned_cols=402  Identities=21%  Similarity=0.200  Sum_probs=331.4

Q ss_pred             CCCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcccc
Q 045304            1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF   80 (540)
Q Consensus         1 ~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~   80 (540)
                      ++|..+..  ++++|+|++|.+++..|..|+++++|++|++++|.+++..|.. +.++++|++|++++|.+++..|..++
T Consensus        26 ~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~  102 (606)
T 3t6q_A           26 EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALS  102 (606)
T ss_dssp             SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred             cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccChhhhc
Confidence            36766654  7999999999999888999999999999999999998544544 48999999999999999988899999


Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccc
Q 045304           81 NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL  160 (540)
Q Consensus        81 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l  160 (540)
                      ++++|++|++++|.+++..+..++++++|++|++++|.+.+...     ..+..+++|++|++++|.+.+..+ ..++.+
T Consensus       103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l  176 (606)
T 3t6q_A          103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-----PKGFPTEKLKVLDFQNNAIHYLSK-EDMSSL  176 (606)
T ss_dssp             SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-----CTTCCCTTCCEEECCSSCCCEECH-HHHHTT
T ss_pred             ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-----ccccCCcccCEEEcccCcccccCh-hhhhhh
Confidence            99999999999999998778889999999999999999987521     223346667777766666654433 222222


Q ss_pred             cc-----------------------------------------------------------------------------c
Q 045304          161 SH-----------------------------------------------------------------------------S  163 (540)
Q Consensus       161 ~~-----------------------------------------------------------------------------~  163 (540)
                       .                                                                             +
T Consensus       177 -~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~  255 (606)
T 3t6q_A          177 -QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS  255 (606)
T ss_dssp             -TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred             -cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence             2                                                                             4


Q ss_pred             CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304          164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS  243 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  243 (540)
                      |+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            555666666666555666888899999999999998 6788889999999999999999988788899999999999999


Q ss_pred             CCCccccCc-cCCCCCCCCEeeCCCCCCCCC---CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee
Q 045304          244 NKFSRSIPA-CFSNLASLRTLSLGSNELTSI---PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG  319 (540)
Q Consensus       244 n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i---p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  319 (540)
                      |.+.+.+|. .+..+++|+.|++++|.++++   +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            998876655 488899999999999999884   6678889999999999999988888889999999999999999987


Q ss_pred             cCcc-ccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc---cCccccCCCCCCeEEcccCcceeeCCC
Q 045304          320 VIPT-TIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT---IPVSLEKLSYLEDLNLSFNKLAGEIPR  395 (540)
Q Consensus       320 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~l~l~~n~l~~~~p~  395 (540)
                      ..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.   .+..+..+++|+.|++++|.+++..|.
T Consensus       415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  494 (606)
T 3t6q_A          415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH  494 (606)
T ss_dssp             CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred             cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence            7654 488889999999999999988888889999999999999998863   335678889999999999999887764


Q ss_pred             C-CCCCCCCcccccCCCCC
Q 045304          396 G-GSFGNFSAESFEGNELL  413 (540)
Q Consensus       396 ~-~~~~~~~~~~~~~n~~~  413 (540)
                      . ..+..+..+++.+|...
T Consensus       495 ~~~~l~~L~~L~Ls~N~l~  513 (606)
T 3t6q_A          495 AFTSLKMMNHVDLSHNRLT  513 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCC
T ss_pred             hhccccCCCEEECCCCccC
Confidence            3 45566777777777543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.3e-45  Score=380.68  Aligned_cols=405  Identities=22%  Similarity=0.231  Sum_probs=309.7

Q ss_pred             CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304            2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN   81 (540)
Q Consensus         2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~   81 (540)
                      +|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++++|.+++..|..|.+
T Consensus        22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (570)
T 2z63_A           22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (570)
T ss_dssp             CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence            565443  47888888888888777778888888888888888887 455555578888888888888888777778888


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304           82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS  161 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  161 (540)
                      +++|++|++++|.+++..+..++++++|++|++++|.+....    +|..+.++++|++|++++|.+.+..+ ..++.+ 
T Consensus        99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l-  172 (570)
T 2z63_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVL-  172 (570)
T ss_dssp             CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECTTSCCCEECG-GGGHHH-
T ss_pred             ccccccccccccccccCCCccccccccccEEecCCCccceec----ChhhhcccCCCCEEeCcCCccceecH-HHccch-
Confidence            888888888888887665556888888888888888777531    45667788888888888888776544 444444 


Q ss_pred             ccC----cEEEccCCccee-------------------------------------------------------------
Q 045304          162 HSL----EYFYMPNCNVSG-------------------------------------------------------------  176 (540)
Q Consensus       162 ~~L----~~L~l~~~~~~~-------------------------------------------------------------  176 (540)
                      .+|    +.+++++|.+.+                                                             
T Consensus       173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~  252 (570)
T 2z63_A          173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE  252 (570)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred             hccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence            344    455555554433                                                             


Q ss_pred             --------------------cCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcc-c-----
Q 045304          177 --------------------GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNN-I-----  230 (540)
Q Consensus       177 --------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~-----  230 (540)
                                          ..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.. +     
T Consensus       253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~  329 (570)
T 2z63_A          253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKR  329 (570)
T ss_dssp             GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCE
T ss_pred             cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCE
Confidence                                33445556677788888877776 466666555 6666666666655 33321 0     


Q ss_pred             --------------cCCCCCCeEEcCCCCCcccc--CccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304          231 --------------CRLTELYELDLGSNKFSRSI--PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       231 --------------~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~  294 (540)
                                    ..+++|++|++++|.+++..  +..+..+++|++|++++|.++++|..+..+++|++|++++|.+.
T Consensus       330 L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~  409 (570)
T 2z63_A          330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK  409 (570)
T ss_dssp             EEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred             EeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc
Confidence                          45677777788777776543  56677788888888888888887777888889999999999888


Q ss_pred             CCCc-cccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCc-ccCCcccCCCCCCCEEECCCCcCccccCcc
Q 045304          295 GPLP-LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ-GSIPYSIGDLISLKSLNLSNNNLSGTIPVS  372 (540)
Q Consensus       295 ~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  372 (540)
                      +..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..
T Consensus       410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  489 (570)
T 2z63_A          410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  489 (570)
T ss_dssp             SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence            7765 56788899999999999999888888999999999999999987 578888999999999999999999888889


Q ss_pred             ccCCCCCCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCCCC
Q 045304          373 LEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGSPN  418 (540)
Q Consensus       373 ~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~~  418 (540)
                      +..+++|+.|++++|++++..|.. ..+..+...++.+|++.|.++.
T Consensus       490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999999999999998766643 4566778888999999988754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.7e-46  Score=396.94  Aligned_cols=387  Identities=18%  Similarity=0.247  Sum_probs=289.5

Q ss_pred             CCCCEEeccCcccccCCCccccCCCCCCEEEc-ccCcCccc---------------------------------------
Q 045304           10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEV-SNNSLSGS---------------------------------------   49 (540)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l-~~n~l~~~---------------------------------------   49 (540)
                      .+++.|+|+++++.|.+|.+++++++|++|+| ++|.+.|.                                       
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46777888888888888888888888888888 66644333                                       


Q ss_pred             -------------------------------------cchhhhcCCCCCCEEEccCCcccc-----------------cC
Q 045304           50 -------------------------------------LSSIAGVRLPNLEVLRMRSNNFCG-----------------TI   75 (540)
Q Consensus        50 -------------------------------------~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~   75 (540)
                                                           +|..+ .++++|+.|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                                 66654 678888888888888887                 37


Q ss_pred             Ccccc--CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCcc-ccC-CCCCccccc-------cCCCCCCCCEEECc
Q 045304           76 PHFIF--NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY-LTS-STSDLNFLS-------SLSNCKTLTYIDLS  144 (540)
Q Consensus        76 ~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~-------~l~~l~~L~~L~l~  144 (540)
                      |..++  ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .     +|.       .+..+++|+.|+++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~-----iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ-----LKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH-----HHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc-----chHHHHhhhhcccccCCccEEEee
Confidence            77776  88888888888888888888888888888888888887 664 2     333       34455688888888


Q ss_pred             CCCCCccCCcc--ccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCC-CCeeeeeCcc
Q 045304          145 DNPLDGILPGT--SVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQK-LQGLSLADNK  221 (540)
Q Consensus       145 ~n~l~~~~~~~--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~  221 (540)
                      +|.+. .+| .  .++.+ ++|+.|++++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.
T Consensus       557 ~N~L~-~ip-~~~~l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          557 YNNLE-EFP-ASASLQKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             SSCCC-BCC-CHHHHTTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             CCcCC-ccC-ChhhhhcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence            88887 566 4  66677 67888888888887 777 7888888888888888887 77777777877 8888888888


Q ss_pred             ccCcCCccccCCCC--CCeEEcCCCCCccccCccC---C--CCCCCCEeeCCCCCCCCCCcccc-CCCCCcEEECCCCcc
Q 045304          222 LEGSIPNNICRLTE--LYELDLGSNKFSRSIPACF---S--NLASLRTLSLGSNELTSIPLTFW-NLKDILYLNFSSNFL  293 (540)
Q Consensus       222 ~~~~~p~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~ip~~~~-~l~~L~~L~L~~n~l  293 (540)
                      ++ .+|..+..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.++.+|..+. .+++|+.|+|++|++
T Consensus       631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred             CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence            87 67777766654  8888888888877655322   2  33478888888888888777654 678888888888888


Q ss_pred             cCCCcccccc--------ccCcceEEcccceeeecCccccc--cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCC-
Q 045304          294 TGPLPLEIEN--------LKVLVGIDFSVNNFSGVIPTTIG--SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSN-  362 (540)
Q Consensus       294 ~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-  362 (540)
                      . .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|++++ 
T Consensus       710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ  786 (876)
T ss_dssp             S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred             C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence            7 45544332        237888888888887 6677765  78888888888888886 677777888888888865 


Q ss_pred             -----CcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCC
Q 045304          363 -----NNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLC  414 (540)
Q Consensus       363 -----n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c  414 (540)
                           |++.+.+|..+..+++|+.|++++|++ +.+|.. ...++..+++.+|+...
T Consensus       787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS  841 (876)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred             CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence                 677778888888888888888888888 677765 33567777777776543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.9e-45  Score=392.86  Aligned_cols=350  Identities=21%  Similarity=0.239  Sum_probs=309.0

Q ss_pred             CCccccCCCCCCEEEcccCcCcc-----------------ccchhh-hcCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304           26 IPTKVFNVSTLKVFEVSNNSLSG-----------------SLSSIA-GVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSL   87 (540)
Q Consensus        26 ~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~   87 (540)
                      +|..|+++++|++|+|++|.+++                 .+|..+ |.++++|+.|+|++|.+.+.+|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            88899999999999999999997                 388887 348999999999999999999999999999999


Q ss_pred             EEccCCc-ccc-cCCccccCCC-------CCCEEECcCccccCCCCCccccc--cCCCCCCCCEEECcCCCCCccCCccc
Q 045304           88 LELGDNS-FSG-FIPDTFGNLR-------NLNKVTLYNNYLTSSTSDLNFLS--SLSNCKTLTYIDLSDNPLDGILPGTS  156 (540)
Q Consensus        88 L~L~~n~-~~~-~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~  156 (540)
                      |++++|+ +++ .+|..+++++       +|++|++++|.++.      +|.  .+.++++|+.|++++|.+. .+|  .
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~  590 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE------FPASASLQKMVKLGLLDCVHNKVR-HLE--A  590 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB------CCCHHHHTTCTTCCEEECTTSCCC-BCC--C
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc------cCChhhhhcCCCCCEEECCCCCcc-cch--h
Confidence            9999998 988 7887666554       99999999999984      666  7999999999999999998 666  6


Q ss_pred             cccccccCcEEEccCCcceecCChhccCCCC-CCeeeccCCccccccCccccCCCC--CCeeeeeCccccCcCCccc---
Q 045304          157 VGNLSHSLEYFYMPNCNVSGGIPEEISNLTN-LIIIYLGGNKLNGSIPITLSKLQK--LQGLSLADNKLEGSIPNNI---  230 (540)
Q Consensus       157 ~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~~~p~~~---  230 (540)
                      ++.+ ++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|.+.+.+|...   
T Consensus       591 ~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l  667 (876)
T 4ecn_A          591 FGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM  667 (876)
T ss_dssp             CCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred             hcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence            6777 79999999999998 89999999999 999999999999 78888776654  9999999999998766432   


Q ss_pred             c--CCCCCCeEEcCCCCCccccCcc-CCCCCCCCEeeCCCCCCCCCCccccCC--------CCCcEEECCCCcccCCCcc
Q 045304          231 C--RLTELYELDLGSNKFSRSIPAC-FSNLASLRTLSLGSNELTSIPLTFWNL--------KDILYLNFSSNFLTGPLPL  299 (540)
Q Consensus       231 ~--~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~ip~~~~~l--------~~L~~L~L~~n~l~~~~~~  299 (540)
                      .  .+++|+.|++++|.++ .+|.. +..+++|+.|++++|.++.+|..+...        ++|+.|+|++|++. .+|.
T Consensus       668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~  745 (876)
T 4ecn_A          668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD  745 (876)
T ss_dssp             TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred             ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence            2  3458999999999998 45554 458999999999999999998865543        38999999999999 7888


Q ss_pred             ccc--cccCcceEEcccceeeecCccccccCCCCcEEeCcC------ccCcccCCcccCCCCCCCEEECCCCcCccccCc
Q 045304          300 EIE--NLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGY------NRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV  371 (540)
Q Consensus       300 ~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  371 (540)
                      .+.  .+++|+.|+|++|.+++ +|..+..+++|+.|+|++      |.+.+.+|..+..+++|+.|++++|++ +.+|.
T Consensus       746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~  823 (876)
T 4ecn_A          746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE  823 (876)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence            887  89999999999999997 788999999999999976      788899999999999999999999999 68888


Q ss_pred             cccCCCCCCeEEcccCcceeeC
Q 045304          372 SLEKLSYLEDLNLSFNKLAGEI  393 (540)
Q Consensus       372 ~~~~~~~L~~l~l~~n~l~~~~  393 (540)
                      .+.  ++|+.|++++|++...-
T Consensus       824 ~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          824 KLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             CCC--SSSCEEECCSCTTCEEE
T ss_pred             hhc--CCCCEEECCCCCCCccC
Confidence            765  69999999999987543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.8e-44  Score=382.88  Aligned_cols=407  Identities=25%  Similarity=0.274  Sum_probs=269.5

Q ss_pred             ccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcccc--CC
Q 045304            5 EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF--NA   82 (540)
Q Consensus         5 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l   82 (540)
                      +|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..+ .++++|++|++++|.+++..+..+.  .+
T Consensus        92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  170 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFAN  170 (680)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred             hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCcccccCHHHhhcccc
Confidence            46666777777777766665555666666666666666666664333333 4555666666655555543333221  22


Q ss_pred             CCCCEEEccCCcccccCC---------------------------------------------------ccccCCC--CC
Q 045304           83 SKLSLLELGDNSFSGFIP---------------------------------------------------DTFGNLR--NL  109 (540)
Q Consensus        83 ~~L~~L~L~~n~~~~~~~---------------------------------------------------~~~~~l~--~L  109 (540)
                      ++|++|++++|.+++..|                                                   ..|..++  +|
T Consensus       171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L  250 (680)
T 1ziw_A          171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL  250 (680)
T ss_dssp             CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred             ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence            333344443333333222                                                   2222222  24


Q ss_pred             CEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCc--------------------------------ccc
Q 045304          110 NKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG--------------------------------TSV  157 (540)
Q Consensus       110 ~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------------------------------~~~  157 (540)
                      ++|++++|.+.+.     .+..+..+++|++|++++|.+.+..+.                                ..+
T Consensus       251 ~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~  325 (680)
T 1ziw_A          251 TMLDLSYNNLNVV-----GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF  325 (680)
T ss_dssp             CEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred             CEEECCCCCcCcc-----CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence            4444444444332     123344455555555555544433220                                022


Q ss_pred             ccccccCcEEEccCCcceecCChhccCCCCCCeeeccC----------------------------CccccccCccccCC
Q 045304          158 GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG----------------------------NKLNGSIPITLSKL  209 (540)
Q Consensus       158 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~----------------------------n~l~~~~~~~l~~l  209 (540)
                      ..+ ++|++|++++|.+.+..+..+..+++|++|++++                            |++++..|..+..+
T Consensus       326 ~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  404 (680)
T 1ziw_A          326 QWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL  404 (680)
T ss_dssp             TTC-TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred             ccC-CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence            233 4566666666666666565566665555555544                            44444555666677


Q ss_pred             CCCCeeeeeCccccCcCC-ccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCC---CCCccccCCCCCcE
Q 045304          210 QKLQGLSLADNKLEGSIP-NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT---SIPLTFWNLKDILY  285 (540)
Q Consensus       210 ~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~ip~~~~~l~~L~~  285 (540)
                      ++|+.|++++|.+.+.+| ..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.++   .+|..+..+++|++
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            777777777777766555 56777777777777777777777777777888888888887765   36778888999999


Q ss_pred             EECCCCcccCCCccccccccCcceEEcccceeeecCc--------cccccCCCCcEEeCcCccCcccCCcccCCCCCCCE
Q 045304          286 LNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP--------TTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS  357 (540)
Q Consensus       286 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  357 (540)
                      |++++|++++..+..+..+++|+.|++++|.+++..+        ..+..+++|+.|++++|.++...+..|.++++|+.
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            9999999998888888999999999999999886522        23678899999999999999555567899999999


Q ss_pred             EECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC-C-CCCCCCcccccCCCCCCCCCC
Q 045304          358 LNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-G-SFGNFSAESFEGNELLCGSPN  418 (540)
Q Consensus       358 L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~-~~~~~~~~~~~~n~~~c~~~~  418 (540)
                      |++++|++++..+..|..+++|+.|++++|++++..|.. . .+.++...++.+||+.|+|+.
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999777777889999999999999998765532 1 456788899999999999863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.3e-44  Score=377.51  Aligned_cols=384  Identities=21%  Similarity=0.181  Sum_probs=309.2

Q ss_pred             CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA   82 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l   82 (540)
                      |.+|+++++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..+ .++++|++|++++|.+++..+..++++
T Consensus        49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l  127 (606)
T 3vq2_A           49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENLVAVETKLASLESFPIGQL  127 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTTCCEEECTTSCCCCSSSSCCTTC
T ss_pred             hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCcccCCEEEccCCccccccccccCCC
Confidence            3468888899999999888888778888888899999998888885445544 788888888888888887776778888


Q ss_pred             CCCCEEEccCCcccc-cCCccccCCCCCCEEECcCccccCCCCCc----------------------cccc---------
Q 045304           83 SKLSLLELGDNSFSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDL----------------------NFLS---------  130 (540)
Q Consensus        83 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----------------------~~~~---------  130 (540)
                      ++|++|++++|.+.+ .+|..|+++++|++|++++|.+++.....                      .++.         
T Consensus       128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~  207 (606)
T 3vq2_A          128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH  207 (606)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred             CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence            888888888888875 46888888888888888888776542210                      0000         


Q ss_pred             --------------------------------------------------------------------------------
Q 045304          131 --------------------------------------------------------------------------------  130 (540)
Q Consensus       131 --------------------------------------------------------------------------------  130 (540)
                                                                                                      
T Consensus       208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L  287 (606)
T 3vq2_A          208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV  287 (606)
T ss_dssp             EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred             eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence                                                                                            


Q ss_pred             --------------cCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCC
Q 045304          131 --------------SLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGN  196 (540)
Q Consensus       131 --------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  196 (540)
                                    .+..+++|+.|++++|.+ +.+| . + .+ ++|++|++++|...+.+  .+..+++|++|++++|
T Consensus       288 ~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~-~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-T-L-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRN  360 (606)
T ss_dssp             SEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-C-C-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSS
T ss_pred             CEEEecCccchhhhhccccccCCEEEcccccC-cccc-c-C-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCC
Confidence                          112222333334444433 2222 1 1 22 45555555555433333  4567788888889988


Q ss_pred             ccccc--cCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccC-ccCCCCCCCCEeeCCCCCCCC-
Q 045304          197 KLNGS--IPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTS-  272 (540)
Q Consensus       197 ~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-  272 (540)
                      .+++.  +|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..|..+++|+.|++++|.+++ 
T Consensus       361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (606)
T 3vq2_A          361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID  439 (606)
T ss_dssp             CEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             ccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence            88865  37888999999999999999985 66889999999999999999998877 689999999999999999998 


Q ss_pred             CCccccCCCCCcEEECCCCcccC-CCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304          273 IPLTFWNLKDILYLNFSSNFLTG-PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD  351 (540)
Q Consensus       273 ip~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  351 (540)
                      .|..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..
T Consensus       440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  519 (606)
T 3vq2_A          440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ  519 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred             chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence            67789999999999999999998 47888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEECCCCcCccccCccccCCC-CCCeEEcccCcceeeCCCC
Q 045304          352 LISLKSLNLSNNNLSGTIPVSLEKLS-YLEDLNLSFNKLAGEIPRG  396 (540)
Q Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~l~~~~p~~  396 (540)
                      +++|+.|++++|+++ .+|..+..++ +|+.+++++|++.+..+..
T Consensus       520 l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          520 LYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             CTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             CCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            999999999999999 6777788887 6999999999999877753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.4e-43  Score=374.18  Aligned_cols=381  Identities=24%  Similarity=0.269  Sum_probs=200.9

Q ss_pred             ccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 045304            5 EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASK   84 (540)
Q Consensus         5 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~   84 (540)
                      +|+++++|++|+|++|.+++..|..|+++++|++|++++|.++ .+|...+..+++|++|++++|.+++..|..++++++
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN  122 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence            4666667777777777666666666666777777777776666 555554466677777777777666555566666777


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCcccccc--CCCCCCCCEEECcCCCCCccCCc--------
Q 045304           85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSS--LSNCKTLTYIDLSDNPLDGILPG--------  154 (540)
Q Consensus        85 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~--------  154 (540)
                      |++|++++|.+++..+..++++++|++|++++|.+++...     ..  ...+++|+.|++++|.+.+..+.        
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  197 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-----EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL  197 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-----HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH-----HHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence            7777777776666666666667777777776666655311     11  12334555555555555444331        


Q ss_pred             ------------------------------------------ccccccc-ccCcEEEccCCcceecCChhccCCCCCCee
Q 045304          155 ------------------------------------------TSVGNLS-HSLEYFYMPNCNVSGGIPEEISNLTNLIII  191 (540)
Q Consensus       155 ------------------------------------------~~~~~l~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  191 (540)
                                                                ..+..+. ++|++|++++|.+.+..|..+..+++|++|
T Consensus       198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (680)
T 1ziw_A          198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF  277 (680)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             hhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEe
Confidence                                                      1111110 124444444444444444444444444444


Q ss_pred             eccCCccccccCccccCCCCCCeeeeeCccccC-----cCCc----cccCCCCCCeEEcCCCCCccccCccCCCCCCCCE
Q 045304          192 YLGGNKLNGSIPITLSKLQKLQGLSLADNKLEG-----SIPN----NICRLTELYELDLGSNKFSRSIPACFSNLASLRT  262 (540)
Q Consensus       192 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~p~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  262 (540)
                      ++++|.+.+..|..+..+++|+.|++++|...+     .+|.    .|..+++|++|++++|.+++..+..|..+++|++
T Consensus       278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  357 (680)
T 1ziw_A          278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY  357 (680)
T ss_dssp             ECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred             eCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcE
Confidence            444444444444444444444444444332221     1121    3455566666666666666666666666666666


Q ss_pred             eeCCCCCCCC--CCc-cccC--CCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCc-cccccCCCCcEEeC
Q 045304          263 LSLGSNELTS--IPL-TFWN--LKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP-TTIGSLKGLQYLFV  336 (540)
Q Consensus       263 L~l~~n~l~~--ip~-~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l  336 (540)
                      |++++|.+..  ++. .+..  .++|+.|++++|++.+..|..+..+++|+.|++++|.+++.+| ..+..+++|++|++
T Consensus       358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence            6665554321  211 1111  1234444444444444444455555555555555555554433 34445555555555


Q ss_pred             cCccCccc--------------------------CCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcce
Q 045304          337 GYNRLQGS--------------------------IPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLA  390 (540)
Q Consensus       337 ~~n~l~~~--------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~  390 (540)
                      ++|.+++.                          +|..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus       438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred             CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence            55544433                          4444555555555555555555444444555555555555555554


Q ss_pred             e
Q 045304          391 G  391 (540)
Q Consensus       391 ~  391 (540)
                      +
T Consensus       518 ~  518 (680)
T 1ziw_A          518 R  518 (680)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=371.41  Aligned_cols=383  Identities=23%  Similarity=0.282  Sum_probs=321.6

Q ss_pred             CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA   82 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l   82 (540)
                      |.+|.++++|++|+|++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++++|.+++..+..++++
T Consensus        45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  123 (570)
T 2z63_A           45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  123 (570)
T ss_dssp             TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred             hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCcccccc
Confidence            457899999999999999999888889999999999999999998 5555555899999999999999986666679999


Q ss_pred             CCCCEEEccCCcccc-cCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC----CEEECcCCCCCccCCc---
Q 045304           83 SKLSLLELGDNSFSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL----TYIDLSDNPLDGILPG---  154 (540)
Q Consensus        83 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~---  154 (540)
                      ++|++|++++|.+.+ .+|..|+++++|++|++++|.++..     .+..+..+++|    +.+++++|.+.+..+.   
T Consensus       124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~  198 (570)
T 2z63_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK  198 (570)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-----CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred             ccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-----cHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence            999999999999987 4688999999999999999988765     22334444444    5556555554433220   


Q ss_pred             -----------------------------------------------------------------------------ccc
Q 045304          155 -----------------------------------------------------------------------------TSV  157 (540)
Q Consensus       155 -----------------------------------------------------------------------------~~~  157 (540)
                                                                                                   ..+
T Consensus       199 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~  278 (570)
T 2z63_A          199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF  278 (570)
T ss_dssp             TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT
T ss_pred             cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh
Confidence                                                                                         222


Q ss_pred             ccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCcc-c-------------------cCCCCCCeeee
Q 045304          158 GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPIT-L-------------------SKLQKLQGLSL  217 (540)
Q Consensus       158 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l-------------------~~l~~L~~L~l  217 (540)
                      ..+ ++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.. +                   ..+++|++|++
T Consensus       279 ~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l  354 (570)
T 2z63_A          279 NCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL  354 (570)
T ss_dssp             GGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred             cCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence            334 68999999999887 577777777 7777777777766 33321 1                   46788889999


Q ss_pred             eCccccCcC--CccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC--ccccCCCCCcEEECCCCcc
Q 045304          218 ADNKLEGSI--PNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP--LTFWNLKDILYLNFSSNFL  293 (540)
Q Consensus       218 ~~n~~~~~~--p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip--~~~~~l~~L~~L~L~~n~l  293 (540)
                      ++|.+++..  |..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+++++  ..+..+++|++|++++|.+
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  433 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT  433 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred             cCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence            988887543  67788999999999999999876555 899999999999999998854  3688999999999999999


Q ss_pred             cCCCccccccccCcceEEcccceee-ecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCcc
Q 045304          294 TGPLPLEIENLKVLVGIDFSVNNFS-GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS  372 (540)
Q Consensus       294 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  372 (540)
                      .+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..
T Consensus       434 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  513 (570)
T 2z63_A          434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI  513 (570)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence            9999999999999999999999998 578999999999999999999999998999999999999999999999888888


Q ss_pred             ccCCCCCCeEEcccCcceeeCCCC
Q 045304          373 LEKLSYLEDLNLSFNKLAGEIPRG  396 (540)
Q Consensus       373 ~~~~~~L~~l~l~~n~l~~~~p~~  396 (540)
                      +..+++|+.+++++|+++|.+|..
T Consensus       514 ~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          514 FDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             hhcccCCcEEEecCCcccCCCcch
Confidence            999999999999999999998864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.5e-43  Score=366.05  Aligned_cols=395  Identities=22%  Similarity=0.239  Sum_probs=288.7

Q ss_pred             CCCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcccc
Q 045304            1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF   80 (540)
Q Consensus         1 ~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~   80 (540)
                      ++|..+.  ++|++|+|++|++++..|..|.++++|++|++++|.+++ ++...+..+++|++|++++|.+++..+..++
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   95 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG   95 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred             cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhc
Confidence            3566554  688999999999888878888889999999999998884 4444447888999999999988877777788


Q ss_pred             CCCCCCEEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCcccc-ccCCCCCCCCEEECcCCCCCccCCccccc
Q 045304           81 NASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFL-SSLSNCKTLTYIDLSDNPLDGILPGTSVG  158 (540)
Q Consensus        81 ~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  158 (540)
                      ++++|++|++++|.+++. .|..++++++|++|++++|.+.+.     ++ ..+.++++|++|++++|.+.+..| ..++
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~  169 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE-----IRRIDFAGLTSLNELEIKALSLRNYQS-QSLK  169 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-----ECTTTTTTCCEEEEEEEEETTCCEECT-TTTT
T ss_pred             cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc-----cCHhhhhcccccCeeeccCCcccccCh-hhhh
Confidence            889999999999888763 567788888999999988874332     22 457788888888888888887666 4555


Q ss_pred             cccccCcEEEccCCcceecCChh-ccCCCCCCeeeccCCccccc---------------------------cCc----c-
Q 045304          159 NLSHSLEYFYMPNCNVSGGIPEE-ISNLTNLIIIYLGGNKLNGS---------------------------IPI----T-  205 (540)
Q Consensus       159 ~l~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~---------------------------~~~----~-  205 (540)
                      .+ .+|++|+++.|.+.. +|.. +..+++|++|++++|++++.                           .+.    . 
T Consensus       170 ~l-~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  247 (549)
T 2z81_A          170 SI-RDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL  247 (549)
T ss_dssp             TC-SEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred             cc-ccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence            44 344444444444321 1211 12334444444444443321                           000    0 


Q ss_pred             ----------------------------------------------------------ccCCCCCCeeeeeCccccCcCC
Q 045304          206 ----------------------------------------------------------LSKLQKLQGLSLADNKLEGSIP  227 (540)
Q Consensus       206 ----------------------------------------------------------l~~l~~L~~L~l~~n~~~~~~p  227 (540)
                                                                                +...++|+.|++++|.+. .+|
T Consensus       248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip  326 (549)
T 2z81_A          248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP  326 (549)
T ss_dssp             GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCC
T ss_pred             hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCC
Confidence                                                                      011234556666666655 456


Q ss_pred             ccc-cCCCCCCeEEcCCCCCccccC---ccCCCCCCCCEeeCCCCCCCCCC---ccccCCCCCcEEECCCCcccCCCccc
Q 045304          228 NNI-CRLTELYELDLGSNKFSRSIP---ACFSNLASLRTLSLGSNELTSIP---LTFWNLKDILYLNFSSNFLTGPLPLE  300 (540)
Q Consensus       228 ~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~ip---~~~~~l~~L~~L~L~~n~l~~~~~~~  300 (540)
                      ..+ ..+++|++|++++|.+++.+|   ..++.+++|++|++++|.+++++   ..+..+++|++|++++|++. .+|..
T Consensus       327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  405 (549)
T 2z81_A          327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS  405 (549)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC
T ss_pred             HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChh
Confidence            554 468899999999999887664   34778889999999999998865   35778899999999999888 67778


Q ss_pred             cccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCC
Q 045304          301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLE  380 (540)
Q Consensus       301 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  380 (540)
                      +..+++|++|++++|.+++ +|..+  .++|++|++++|++++.+    ..+++|++|++++|+++ .+|. ...+++|+
T Consensus       406 ~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~  476 (549)
T 2z81_A          406 CQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLL  476 (549)
T ss_dssp             CCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCC
T ss_pred             hcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCC
Confidence            8888899999999998874 34333  258999999999988643    57889999999999998 6665 46789999


Q ss_pred             eEEcccCcceeeCCC-CCCCCCCCcccccCCCCCCCCC
Q 045304          381 DLNLSFNKLAGEIPR-GGSFGNFSAESFEGNELLCGSP  417 (540)
Q Consensus       381 ~l~l~~n~l~~~~p~-~~~~~~~~~~~~~~n~~~c~~~  417 (540)
                      .|++++|++++..|. ...+..+...++.+|++.|.|+
T Consensus       477 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             EEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             EEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999999999987765 2556778888999999988764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-42  Score=352.83  Aligned_cols=356  Identities=21%  Similarity=0.232  Sum_probs=225.8

Q ss_pred             CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccC-CccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304           34 STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTI-PHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKV  112 (540)
Q Consensus        34 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  112 (540)
                      ++|++|++++|.+++..|..+ .++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            445555555555542222222 44555555555555444322 2334455555555555555554444455555555555


Q ss_pred             ECcCccccCCCCCcccccc--CCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCC--CCC
Q 045304          113 TLYNNYLTSSTSDLNFLSS--LSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL--TNL  188 (540)
Q Consensus       113 ~l~~n~~~~~~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l--~~L  188 (540)
                      ++++|.+++.     .+..  +..+++|++|++++|.+.+..|...+..+ ++|++|++++|.+.+..+..+..+  .+|
T Consensus       109 ~L~~n~l~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L  182 (455)
T 3v47_A          109 TLTQCNLDGA-----VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHF  182 (455)
T ss_dssp             ECTTSCCBTH-----HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred             eCCCCCCCcc-----ccCcccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChhhhhccccccc
Confidence            5555544432     1111  44455555555555555544442224444 455555555555554444444443  445


Q ss_pred             CeeeccCCccccccCcc--------ccCCCCCCeeeeeCccccCcCCccccCC---CCCCeEEcCCCCCccc--------
Q 045304          189 IIIYLGGNKLNGSIPIT--------LSKLQKLQGLSLADNKLEGSIPNNICRL---TELYELDLGSNKFSRS--------  249 (540)
Q Consensus       189 ~~L~l~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~p~~~~~l---~~L~~L~l~~n~l~~~--------  249 (540)
                      +.|++++|.+.+..+..        +..+++|++|++++|.+.+..|..+...   ++|+.|++++|...+.        
T Consensus       183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  262 (455)
T 3v47_A          183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK  262 (455)
T ss_dssp             EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred             cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence            55555555555333222        1234556666666665555554444332   5556666665543321        


Q ss_pred             --cCccCCC--CCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccc
Q 045304          250 --IPACFSN--LASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTT  324 (540)
Q Consensus       250 --~~~~~~~--l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  324 (540)
                        .+..+..  .++|+.|++++|.+++ .|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..
T Consensus       263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  342 (455)
T 3v47_A          263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM  342 (455)
T ss_dssp             CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred             cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence              1122222  3688999999999888 5667888899999999999999888888999999999999999998888889


Q ss_pred             cccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC
Q 045304          325 IGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG  396 (540)
Q Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~  396 (540)
                      +..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            999999999999999999888999999999999999999999777777889999999999999999988853

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-43  Score=365.13  Aligned_cols=395  Identities=21%  Similarity=0.256  Sum_probs=287.0

Q ss_pred             CCCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcccc
Q 045304            1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF   80 (540)
Q Consensus         1 ~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~   80 (540)
                      ++|..+.  ++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..+ ..+++|++|++++|.++ .+|..  
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~-~lp~~--   87 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLV-KISCH--   87 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCCC-EEECC--
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCcee-ecCcc--
Confidence            3676666  789999999999987777889999999999999999885445444 78999999999999888 56655  


Q ss_pred             CCCCCCEEEccCCcccc-cCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC--CEEECcCCCC--CccCCcc
Q 045304           81 NASKLSLLELGDNSFSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL--TYIDLSDNPL--DGILPGT  155 (540)
Q Consensus        81 ~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~  155 (540)
                      .+++|++|++++|.+++ .+|..|+++++|++|++++|.+.+.        .+..+++|  +.|++++|.+  .+..| .
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L~l~~n~l~~~~~~~-~  158 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--------SVLPIAHLNISKVLLVLGETYGEKEDP-E  158 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--------GGGGGTTSCEEEEEEEECTTTTSSCCT-T
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--------hccccccceeeEEEeeccccccccccc-c
Confidence            78899999999999887 4678899999999999999887652        24555666  8888888877  55444 3


Q ss_pred             cccccc-------------------------ccCcEEEccCCc-------ceecCChhccCCCCCCeeeccCCccccccC
Q 045304          156 SVGNLS-------------------------HSLEYFYMPNCN-------VSGGIPEEISNLTNLIIIYLGGNKLNGSIP  203 (540)
Q Consensus       156 ~~~~l~-------------------------~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  203 (540)
                      .+..+.                         ++|+.+++++|.       +.+.+| .+..+++|+.|++++|.+++..+
T Consensus       159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~  237 (520)
T 2z7x_B          159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSF  237 (520)
T ss_dssp             TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHH
T ss_pred             cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHH
Confidence            333321                         345555555544       333333 34444544444444444332211


Q ss_pred             cccc---CCCCCCeeeeeCccccCcCCccc-----cCCCC--------------------------CCeEEcCCCCCccc
Q 045304          204 ITLS---KLQKLQGLSLADNKLEGSIPNNI-----CRLTE--------------------------LYELDLGSNKFSRS  249 (540)
Q Consensus       204 ~~l~---~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~--------------------------L~~L~l~~n~l~~~  249 (540)
                      ..+.   ..++|++|++++|.+.|.+|..+     ..+++                          |+.|++++|.+...
T Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~  317 (520)
T 2z7x_B          238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM  317 (520)
T ss_dssp             HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred             HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc
Confidence            1110   12355555555555555555544     44444                          55555555554322


Q ss_pred             cCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccC--CCccccccccCcceEEcccceeeecCcc-cc
Q 045304          250 IPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTG--PLPLEIENLKVLVGIDFSVNNFSGVIPT-TI  325 (540)
Q Consensus       250 ~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~  325 (540)
                      .  .+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+  .+|..+..+++|++|++++|.+++.+|. .+
T Consensus       318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~  395 (520)
T 2z7x_B          318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC  395 (520)
T ss_dssp             C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred             c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence            1  12678899999999999998 78888899999999999999986  5667788999999999999999985555 47


Q ss_pred             ccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC--CCCCCCC
Q 045304          326 GSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG--GSFGNFS  403 (540)
Q Consensus       326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~--~~~~~~~  403 (540)
                      ..+++|++|++++|.+++.+|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|..  ..+..+.
T Consensus       396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~  471 (520)
T 2z7x_B          396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ  471 (520)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence            8889999999999999888777664  78999999999999 78887779999999999999998 46643  4456777


Q ss_pred             cccccCCCCCCCCC
Q 045304          404 AESFEGNELLCGSP  417 (540)
Q Consensus       404 ~~~~~~n~~~c~~~  417 (540)
                      ..++.+|++.|.|+
T Consensus       472 ~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          472 KIWLHTNPWDCSCP  485 (520)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEECcCCCCcccCC
Confidence            88899999988763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.5e-42  Score=360.46  Aligned_cols=377  Identities=21%  Similarity=0.256  Sum_probs=298.0

Q ss_pred             CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccc-cCCccccC
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCG-TIPHFIFN   81 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~   81 (540)
                      |.+|+++++|++|+|++|++++..|..|+.+++|++|++++|.++ .++...+..+++|++|++++|.+++ ..|..+++
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  121 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN  121 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred             hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence            677999999999999999999888899999999999999999998 4555545899999999999999986 45778999


Q ss_pred             CCCCCEEEccCCcccccC-CccccCCCCCCEEECcCccccCCCCCccccccCC------------------------CCC
Q 045304           82 ASKLSLLELGDNSFSGFI-PDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLS------------------------NCK  136 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~------------------------~l~  136 (540)
                      +++|++|++++|.+.+.+ +..|.++++|++|++++|.+++.     .+..+.                        .++
T Consensus       122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  196 (549)
T 2z81_A          122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-----QSQSLKSIRDIHHLTLHLSESAFLLEIFADILS  196 (549)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-----CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT
T ss_pred             cCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-----ChhhhhccccCceEecccCcccccchhhHhhcc
Confidence            999999999999844444 46899999999999999988874     233333                        356


Q ss_pred             CCCEEECcCCCCCccCC-ccccccccccCcEEEccCCcceecCCh-----------------------------------
Q 045304          137 TLTYIDLSDNPLDGILP-GTSVGNLSHSLEYFYMPNCNVSGGIPE-----------------------------------  180 (540)
Q Consensus       137 ~L~~L~l~~n~l~~~~~-~~~~~~l~~~L~~L~l~~~~~~~~~~~-----------------------------------  180 (540)
                      +|++|++++|.+.+... ...+.....+|+.|++++|.+.+..+.                                   
T Consensus       197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  276 (549)
T 2z81_A          197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV  276 (549)
T ss_dssp             TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred             cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence            67777777777665310 011111113344444433333221110                                   


Q ss_pred             ----------------------------hccCCCCCCeeeccCCccccccCccc-cCCCCCCeeeeeCccccCcCCc---
Q 045304          181 ----------------------------EISNLTNLIIIYLGGNKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPN---  228 (540)
Q Consensus       181 ----------------------------~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~---  228 (540)
                                                  .....++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|.   
T Consensus       277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  355 (549)
T 2z81_A          277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA  355 (549)
T ss_dssp             CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred             hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchh
Confidence                                        0112346777778888776 566655 5799999999999999987643   


Q ss_pred             cccCCCCCCeEEcCCCCCccccC--ccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccC
Q 045304          229 NICRLTELYELDLGSNKFSRSIP--ACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKV  306 (540)
Q Consensus       229 ~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  306 (540)
                      .++.+++|++|++++|++++..+  ..+..+++|++|++++|.++.+|..+..+++|++|++++|.+.+ +|..+  .++
T Consensus       356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~  432 (549)
T 2z81_A          356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQT  432 (549)
T ss_dssp             CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTT
T ss_pred             hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchh--cCC
Confidence            47889999999999999986533  45888999999999999999999999999999999999999874 34333  268


Q ss_pred             cceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEccc
Q 045304          307 LVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF  386 (540)
Q Consensus       307 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~  386 (540)
                      |+.|++++|++++.+    ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+.+++++
T Consensus       433 L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  506 (549)
T 2z81_A          433 LEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT  506 (549)
T ss_dssp             CSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             ceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence            999999999998753    57899999999999998 6775 46789999999999999999898899999999999999


Q ss_pred             CcceeeCCC
Q 045304          387 NKLAGEIPR  395 (540)
Q Consensus       387 n~l~~~~p~  395 (540)
                      |++.|.+|.
T Consensus       507 N~~~~~~~~  515 (549)
T 2z81_A          507 NPWDCSCPR  515 (549)
T ss_dssp             SCBCCCHHH
T ss_pred             CCccCCCcc
Confidence            999988773

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=371.26  Aligned_cols=385  Identities=20%  Similarity=0.172  Sum_probs=315.9

Q ss_pred             CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchh-hhcCCCCCCEEEccCCcccccCC-cccc
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSI-AGVRLPNLEVLRMRSNNFCGTIP-HFIF   80 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~l~   80 (540)
                      |.+|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|.. .+..+++|++|+|++|.+++..+ ..++
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence            677999999999999999999888999999999999999999998766554 45789999999999999987655 5789


Q ss_pred             CCCCCCEEEccCCcccccCCccccCC--CC------------------------------CCEEECcCccccCCCCCccc
Q 045304           81 NASKLSLLELGDNSFSGFIPDTFGNL--RN------------------------------LNKVTLYNNYLTSSTSDLNF  128 (540)
Q Consensus        81 ~l~~L~~L~L~~n~~~~~~~~~~~~l--~~------------------------------L~~L~l~~n~~~~~~~~~~~  128 (540)
                      ++++|++|++++|.+++..+..+..+  ++                              |++|++++|.+....... +
T Consensus       146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~  224 (844)
T 3j0a_A          146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN-F  224 (844)
T ss_dssp             TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG-G
T ss_pred             hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHH-H
Confidence            99999999999998877666555433  33                              566666666443321100 0


Q ss_pred             c--------------------------------ccCCC--CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcc
Q 045304          129 L--------------------------------SSLSN--CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV  174 (540)
Q Consensus       129 ~--------------------------------~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~  174 (540)
                      .                                ..+..  .++|+.|++++|.+.+..+ ..+..+ ++|+.|++++|.+
T Consensus       225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l-~~L~~L~L~~n~i  302 (844)
T 3j0a_A          225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETL-KDLKVLNLAYNKI  302 (844)
T ss_dssp             GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS-CCSSSC-CCCCEEEEESCCC
T ss_pred             HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh-hhhhcC-CCCCEEECCCCcC
Confidence            0                                01112  2689999999999888766 667777 7899999999999


Q ss_pred             eecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc----
Q 045304          175 SGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI----  250 (540)
Q Consensus       175 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~----  250 (540)
                      .+..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..    
T Consensus       303 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  382 (844)
T 3j0a_A          303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS  382 (844)
T ss_dssp             CEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCS
T ss_pred             CCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCC
Confidence            9888888999999999999999998888888999999999999999998777778888999999999888876421    


Q ss_pred             --------------Cc----------------------cCCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEEECCCCc
Q 045304          251 --------------PA----------------------CFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNF  292 (540)
Q Consensus       251 --------------~~----------------------~~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L~L~~n~  292 (540)
                                    |.                      .+..+++|+.|++++|.+++++.  .+..+++|+.|++++|.
T Consensus       383 L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~  462 (844)
T 3j0a_A          383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM  462 (844)
T ss_dssp             CSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred             cchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence                          11                      12367899999999999998544  35678999999999999


Q ss_pred             cc-----CCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304          293 LT-----GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       293 l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                      +.     +..+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+.  ++|+.|++++|++++
T Consensus       463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~  540 (844)
T 3j0a_A          463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA  540 (844)
T ss_dssp             CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred             cccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence            97     44556788999999999999999999999999999999999999999987776665  899999999999999


Q ss_pred             ccCccccCCCCCCeEEcccCcceeeCCC
Q 045304          368 TIPVSLEKLSYLEDLNLSFNKLAGEIPR  395 (540)
Q Consensus       368 ~~~~~~~~~~~L~~l~l~~n~l~~~~p~  395 (540)
                      ..|..+   ++|+.+++++|++.|.++.
T Consensus       541 ~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          541 PNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             CChhHh---CCcCEEEecCCCccccccc
Confidence            988765   4789999999999987764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.6e-42  Score=356.56  Aligned_cols=375  Identities=21%  Similarity=0.277  Sum_probs=300.1

Q ss_pred             CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccc-cCCccccC
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCG-TIPHFIFN   81 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~   81 (540)
                      |.+|.++++|++|+|++|++++..|..|+++++|++|++++|.++ .+|..   .+++|++|++++|.+++ .+|..+++
T Consensus        38 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~  113 (520)
T 2z7x_B           38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGN  113 (520)
T ss_dssp             HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGG
T ss_pred             hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhcc
Confidence            357999999999999999999888999999999999999999998 78876   79999999999999997 57899999


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCC--CEEECcCccc--cCCCCC-cc--------------------ccccCCCCC
Q 045304           82 ASKLSLLELGDNSFSGFIPDTFGNLRNL--NKVTLYNNYL--TSSTSD-LN--------------------FLSSLSNCK  136 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~-~~--------------------~~~~l~~l~  136 (540)
                      +++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+.... +.                    ....+.+++
T Consensus       114 l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~  190 (520)
T 2z7x_B          114 MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA  190 (520)
T ss_dssp             CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS
T ss_pred             CCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc
Confidence            9999999999999986   457777888  9999999988  332110 00                    001233456


Q ss_pred             CCCEEECcCCC-------CCccCCccccccc--------------------------cccCcEEEccCCcceecCChhc-
Q 045304          137 TLTYIDLSDNP-------LDGILPGTSVGNL--------------------------SHSLEYFYMPNCNVSGGIPEEI-  182 (540)
Q Consensus       137 ~L~~L~l~~n~-------l~~~~~~~~~~~l--------------------------~~~L~~L~l~~~~~~~~~~~~l-  182 (540)
                      +|+.+++++|.       +.+.++  .++.+                          .++|++|++++|.+.|.+|..+ 
T Consensus       191 ~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~  268 (520)
T 2z7x_B          191 NLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF  268 (520)
T ss_dssp             EEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred             ceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchh
Confidence            66666666654       222211  12222                          0267777777777777777766 


Q ss_pred             ----cCCCCCCeeeccCCccccccC-ccccCC---CCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccC
Q 045304          183 ----SNLTNLIIIYLGGNKLNGSIP-ITLSKL---QKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACF  254 (540)
Q Consensus       183 ----~~l~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~  254 (540)
                          ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+..  .+..+++|++|++++|.+++.+|..+
T Consensus       269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~  344 (520)
T 2z7x_B          269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC  344 (520)
T ss_dssp             CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence                6777777777777766  344 333333   56888888888776432  12688999999999999999899999


Q ss_pred             CCCCCCCEeeCCCCCCCC---CCccccCCCCCcEEECCCCcccCCCcc-ccccccCcceEEcccceeeecCccccccCCC
Q 045304          255 SNLASLRTLSLGSNELTS---IPLTFWNLKDILYLNFSSNFLTGPLPL-EIENLKVLVGIDFSVNNFSGVIPTTIGSLKG  330 (540)
Q Consensus       255 ~~l~~L~~L~l~~n~l~~---ip~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  330 (540)
                      ..+++|+.|++++|.+++   +|..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+++..|..+.  ++
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~  422 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR  422 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred             ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence            999999999999999996   456788999999999999999986665 478899999999999999988877665  79


Q ss_pred             CcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCcc-ccCCCCCCeEEcccCcceeeCC
Q 045304          331 LQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS-LEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      |+.|++++|+++ .+|..+..+++|++|++++|+++. +|.. +..+++|+.+++++|++.|.++
T Consensus       423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            999999999999 788888899999999999999994 5554 8899999999999999998765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.6e-40  Score=348.49  Aligned_cols=407  Identities=21%  Similarity=0.246  Sum_probs=298.9

Q ss_pred             CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304            2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN   81 (540)
Q Consensus         2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~   81 (540)
                      ||..+.  +++++|+|++|++++..+.+|.++++|++|+|++|.++ .+++.+|.++++|++|+|++|++++..+..|.+
T Consensus        46 vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           46 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            565443  48999999999999887889999999999999999998 688777789999999999999999777788999


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccc-
Q 045304           82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL-  160 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l-  160 (540)
                      +++|++|++++|.+++..+..|+++++|++|++++|.+....    .+..+..+++|++|++++|.+.+..+ ..+..+ 
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~  197 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLH  197 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHH
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC----CchhhccchhhhhhcccCcccccccc-ccccchh
Confidence            999999999999999877788999999999999999987642    45678889999999999999887655 333221 


Q ss_pred             --cccCcEEEccCCcceecCCh----------------------------------------------------------
Q 045304          161 --SHSLEYFYMPNCNVSGGIPE----------------------------------------------------------  180 (540)
Q Consensus       161 --~~~L~~L~l~~~~~~~~~~~----------------------------------------------------------  180 (540)
                        ......++++.|.+....+.                                                          
T Consensus       198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~  277 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG  277 (635)
T ss_dssp             TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred             hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence              11122333333322211100                                                          


Q ss_pred             ---------------------------------------------hccCCCCCCeeeccCCccccccCcc----------
Q 045304          181 ---------------------------------------------EISNLTNLIIIYLGGNKLNGSIPIT----------  205 (540)
Q Consensus       181 ---------------------------------------------~l~~l~~L~~L~l~~n~l~~~~~~~----------  205 (540)
                                                                   .+.....++.|++.+|.+.+..+..          
T Consensus       278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~  357 (635)
T 4g8a_A          278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT  357 (635)
T ss_dssp             GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred             ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence                                                         0111223333333333332211110          


Q ss_pred             ---------ccCCCCCCeeeeeCcccc--CcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC-
Q 045304          206 ---------LSKLQKLQGLSLADNKLE--GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-  273 (540)
Q Consensus       206 ---------l~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-  273 (540)
                               ...+++|+.++++.|.+.  +..+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+..... 
T Consensus       358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~  436 (635)
T 4g8a_A          358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS  436 (635)
T ss_dssp             SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTT
T ss_pred             cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccc
Confidence                     112233333333333321  1122223333344444444443332 334566677888888887766552 


Q ss_pred             C-ccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee-ecCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304          274 P-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS-GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD  351 (540)
Q Consensus       274 p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  351 (540)
                      + ..+..+++++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.+
T Consensus       437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  516 (635)
T 4g8a_A          437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  516 (635)
T ss_dssp             SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence            2 35678889999999999999888999999999999999999854 457888999999999999999999999999999


Q ss_pred             CCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCC-CC-CCCCcccccCCCCCCCCC
Q 045304          352 LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGG-SF-GNFSAESFEGNELLCGSP  417 (540)
Q Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~-~~-~~~~~~~~~~n~~~c~~~  417 (540)
                      +++|++|+|++|++++..|..|..+++|+.|++++|++++..|..- .+ .+++.+++.+||+.|+|.
T Consensus       517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999999989999999999999999999998877542 22 567889999999999873

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-40  Score=345.46  Aligned_cols=391  Identities=20%  Similarity=0.210  Sum_probs=215.4

Q ss_pred             CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304            2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN   81 (540)
Q Consensus         2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~   81 (540)
                      +|..+.  ++|++|+|++|.+++..|..|.++++|++|++++|.+++ ++...+..+++|++|++++|.++ .+|..  .
T Consensus        46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~  119 (562)
T 3a79_B           46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ-NISCC--P  119 (562)
T ss_dssp             CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred             CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence            555443  677888888888876666777788888888888887774 43333467788888888888777 45554  6


Q ss_pred             CCCCCEEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC--CEEECcCCCC--CccCCccc
Q 045304           82 ASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL--TYIDLSDNPL--DGILPGTS  156 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~  156 (540)
                      +++|++|++++|.+++. .|..|+++++|++|++++|.+...        .+..+++|  +.|++++|.+  .+..+ ..
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L~L~~n~l~~~~~~~-~~  190 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--------DLLPVAHLHLSCILLDLVSYHIKGGET-ES  190 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--------TTGGGTTSCEEEEEEEESSCCCCSSSC-CE
T ss_pred             cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--------chhhhhhceeeEEEeecccccccccCc-cc
Confidence            77888888888877763 356777788888888888777652        13333444  7777777777  55444 33


Q ss_pred             ccccc-------------------------ccCcEEEccCCc----------------------------cee----cCC
Q 045304          157 VGNLS-------------------------HSLEYFYMPNCN----------------------------VSG----GIP  179 (540)
Q Consensus       157 ~~~l~-------------------------~~L~~L~l~~~~----------------------------~~~----~~~  179 (540)
                      +..+.                         .+|+.+++++|.                            +.+    .++
T Consensus       191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~  270 (562)
T 3a79_B          191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF  270 (562)
T ss_dssp             EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred             ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence            32211                         344444444432                            000    001


Q ss_pred             hhccCCCCCCeeeccCCccccccCccc-----cCCCCCCeeeeeCccccCcCCc-cccC---CCCCCeEEcCCCCCcccc
Q 045304          180 EEISNLTNLIIIYLGGNKLNGSIPITL-----SKLQKLQGLSLADNKLEGSIPN-NICR---LTELYELDLGSNKFSRSI  250 (540)
Q Consensus       180 ~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~p~-~~~~---l~~L~~L~l~~n~l~~~~  250 (540)
                      +. ...++|++|++++|.+++.+|..+     ..++.|+.+++..+.+  .+|. .+..   ..+|++|++++|.+....
T Consensus       271 ~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~  347 (562)
T 3a79_B          271 QF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV  347 (562)
T ss_dssp             HH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred             Hh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc
Confidence            11 112378888888888888888766     4444444444444444  2331 1111   134555555555443211


Q ss_pred             CccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCC--CccccccccCcceEEcccceeeecCcc-ccc
Q 045304          251 PACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGP--LPLEIENLKVLVGIDFSVNNFSGVIPT-TIG  326 (540)
Q Consensus       251 ~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~  326 (540)
                        ....+++|++|++++|.+++ +|..+..+++|++|++++|++.+.  +|..+..+++|+.|++++|.+++.+|. .+.
T Consensus       348 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          348 --CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             --CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred             --CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence              11344555555555555555 444555555555555555555542  233445555555555555555542332 344


Q ss_pred             cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCC--CCCCCCCCc
Q 045304          327 SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPR--GGSFGNFSA  404 (540)
Q Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~--~~~~~~~~~  404 (540)
                      .+++|++|++++|.+++.+|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.  ...+..+..
T Consensus       426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~  501 (562)
T 3a79_B          426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY  501 (562)
T ss_dssp             CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCC
T ss_pred             CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCE
Confidence            455555555555555544443332  35555555555555 34444445555555555555555 2332  123334444


Q ss_pred             ccccCCCCCCCC
Q 045304          405 ESFEGNELLCGS  416 (540)
Q Consensus       405 ~~~~~n~~~c~~  416 (540)
                      .++.+|++.|+|
T Consensus       502 L~l~~N~~~c~c  513 (562)
T 3a79_B          502 IWLHDNPWDCTC  513 (562)
T ss_dssp             EECCSCCBCCCH
T ss_pred             EEecCCCcCCCc
Confidence            555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.1e-40  Score=334.16  Aligned_cols=372  Identities=18%  Similarity=0.170  Sum_probs=320.4

Q ss_pred             CCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccC-CccccCCCCCCEEEC
Q 045304           36 LKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFI-PDTFGNLRNLNKVTL  114 (540)
Q Consensus        36 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l  114 (540)
                      -+.++.+++.++ .+|. +   .++|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            346778888887 7886 3   388999999999999888999999999999999999987554 677999999999999


Q ss_pred             cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCc-cccccccccCcEEEccCCcceecCChh-ccCCCCCCeee
Q 045304          115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG-TSVGNLSHSLEYFYMPNCNVSGGIPEE-ISNLTNLIIIY  192 (540)
Q Consensus       115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~  192 (540)
                      ++|.+++.     .+..+.++++|++|++++|.+.+..+. ..+..+ ++|++|++++|.+.+..|.. +..+++|++|+
T Consensus        87 s~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  160 (455)
T 3v47_A           87 DYNQFLQL-----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD  160 (455)
T ss_dssp             TTCTTCEE-----CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred             CCCccCcc-----ChhhccCcccCCEEeCCCCCCCccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence            99999875     466799999999999999999875441 236667 79999999999999887876 89999999999


Q ss_pred             ccCCccccccCccccCC--CCCCeeeeeCccccCcCCcc--------ccCCCCCCeEEcCCCCCccccCccCCCC---CC
Q 045304          193 LGGNKLNGSIPITLSKL--QKLQGLSLADNKLEGSIPNN--------ICRLTELYELDLGSNKFSRSIPACFSNL---AS  259 (540)
Q Consensus       193 l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~p~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~  259 (540)
                      +++|.+.+..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+++..|..+...   ++
T Consensus       161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  240 (455)
T 3v47_A          161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK  240 (455)
T ss_dssp             CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred             CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence            99999999888888766  78999999999998655443        3366899999999999998888776544   88


Q ss_pred             CCEeeCCCCCCCCCC-----------cccc--CCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccc
Q 045304          260 LRTLSLGSNELTSIP-----------LTFW--NLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIG  326 (540)
Q Consensus       260 L~~L~l~~n~l~~ip-----------~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  326 (540)
                      |+.|++++|...+..           ..+.  ..++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..|.
T Consensus       241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  320 (455)
T 3v47_A          241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW  320 (455)
T ss_dssp             EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence            999999988654311           1122  236899999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC-CCCCCCCcc
Q 045304          327 SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAE  405 (540)
Q Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~  405 (540)
                      .+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+.. ..+..+..+
T Consensus       321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  400 (455)
T 3v47_A          321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI  400 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence            9999999999999999888999999999999999999999988999999999999999999998754432 456788899


Q ss_pred             cccCCCCCCCCCC
Q 045304          406 SFEGNELLCGSPN  418 (540)
Q Consensus       406 ~~~~n~~~c~~~~  418 (540)
                      ++.+|++.|.+|.
T Consensus       401 ~l~~N~l~~~~~~  413 (455)
T 3v47_A          401 WLHTNPWDCSCPR  413 (455)
T ss_dssp             ECCSSCBCCCTTT
T ss_pred             EccCCCcccCCCc
Confidence            9999999998864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.1e-40  Score=341.69  Aligned_cols=383  Identities=19%  Similarity=0.199  Sum_probs=303.4

Q ss_pred             CCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304            8 NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSL   87 (540)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~   87 (540)
                      .+...+++++++|++++ +|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+++..|..|.++++|++
T Consensus        29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            34556899999999995 777664  89999999999998 566555589999999999999999888999999999999


Q ss_pred             EEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccC--c
Q 045304           88 LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSL--E  165 (540)
Q Consensus        88 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L--~  165 (540)
                      |++++|.++ .+|..  .+++|++|++++|.+++.+    .+..+.++++|++|++++|.+.+.    .+..+ .+|  +
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l-~~L~L~  172 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLP----VCKEFGNLTKLTFLGLSAAKFRQL----DLLPV-AHLHLS  172 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCC----CCGGGGGCTTCCEEEEECSBCCTT----TTGGG-TTSCEE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCccccC----chHhhcccCcccEEecCCCccccC----chhhh-hhceee
Confidence            999999998 45655  8999999999999998743    456789999999999999998763    33444 455  9


Q ss_pred             EEEccCCcc--eecCChhccCC--------------------------CCCCeeeccCCc--------------------
Q 045304          166 YFYMPNCNV--SGGIPEEISNL--------------------------TNLIIIYLGGNK--------------------  197 (540)
Q Consensus       166 ~L~l~~~~~--~~~~~~~l~~l--------------------------~~L~~L~l~~n~--------------------  197 (540)
                      +|++++|.+  ++..|..+..+                          ++|+.+++++|.                    
T Consensus       173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~  252 (562)
T 3a79_B          173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL  252 (562)
T ss_dssp             EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred             EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence            999999998  77666666553                          355666666552                    


Q ss_pred             --------cccc----cCccccCCCCCCeeeeeCccccCcCCccc-----cCCCCCCeEEcCCCCCccccCc-cCC---C
Q 045304          198 --------LNGS----IPITLSKLQKLQGLSLADNKLEGSIPNNI-----CRLTELYELDLGSNKFSRSIPA-CFS---N  256 (540)
Q Consensus       198 --------l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~~~-~~~---~  256 (540)
                              +.+.    ++.. ...++|++|++++|.+.|.+|..+     ..++.|+.+++..+.+  .+|. .+.   .
T Consensus       253 ~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~  329 (562)
T 3a79_B          253 NVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA  329 (562)
T ss_dssp             EEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred             EEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence                    1100    0111 123489999999999999999877     6777777777777766  3442 221   1


Q ss_pred             CCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeec--CccccccCCCCcEE
Q 045304          257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV--IPTTIGSLKGLQYL  334 (540)
Q Consensus       257 l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L  334 (540)
                      ..+|+.|++++|.+..++. ...+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.  +|..+..+++|++|
T Consensus       330 ~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          330 EMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             TCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             cCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence            2679999999999876542 25789999999999999999999999999999999999999973  45778999999999


Q ss_pred             eCcCccCcccCCc-ccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCC-CCCCCCCCcccccCCCC
Q 045304          335 FVGYNRLQGSIPY-SIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPR-GGSFGNFSAESFEGNEL  412 (540)
Q Consensus       335 ~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~~~~~~~~~~~~~~n~~  412 (540)
                      ++++|.+++.+|. .+..+++|+.|++++|++++.+|..+.  ++|+.|++++|+++ .+|. ...+..+..+++.+|..
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred             ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence            9999999985654 588899999999999999988776654  78999999999998 5554 34566778888888865


Q ss_pred             C
Q 045304          413 L  413 (540)
Q Consensus       413 ~  413 (540)
                      .
T Consensus       486 ~  486 (562)
T 3a79_B          486 K  486 (562)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.5e-38  Score=321.46  Aligned_cols=345  Identities=29%  Similarity=0.412  Sum_probs=302.4

Q ss_pred             CCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304            9 LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLL   88 (540)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L   88 (540)
                      +++|+.|+++++.+.. +| .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++..+  +.++++|++|
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            6799999999999984 55 4889999999999999998 4555  4799999999999999986554  8999999999


Q ss_pred             EccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEE
Q 045304           89 ELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFY  168 (540)
Q Consensus        89 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~  168 (540)
                      ++++|.+++..+  +.++++|++|++++|.+...       ..+..+++|+.|+++ +.+.+.   ..+..+ ++|++|+
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~l~-~~~~~~---~~~~~l-~~L~~L~  183 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-------SALSGLTSLQQLSFG-NQVTDL---KPLANL-TTLERLD  183 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-------GGGTTCTTCSEEEEE-ESCCCC---GGGTTC-TTCCEEE
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-------hhhccCCcccEeecC-CcccCc---hhhccC-CCCCEEE
Confidence            999999986533  89999999999999998864       248899999999997 445443   336666 7999999


Q ss_pred             ccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcc
Q 045304          169 MPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR  248 (540)
Q Consensus       169 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  248 (540)
                      +++|.+.+.  +.+..+++|++|++++|.+.+..|  +..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++
T Consensus       184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  257 (466)
T 1o6v_A          184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN  257 (466)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc
Confidence            999998753  458899999999999999987665  77899999999999999853  468899999999999999987


Q ss_pred             ccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccC
Q 045304          249 SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSL  328 (540)
Q Consensus       249 ~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  328 (540)
                      ..+  +..+++|+.|++++|.+++++. +..+++|+.|++++|++.+..+  +..+++|+.|++++|.+++..|  +..+
T Consensus       258 ~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l  330 (466)
T 1o6v_A          258 LAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL  330 (466)
T ss_dssp             CGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred             chh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC
Confidence            655  8899999999999999999876 8889999999999999987654  7889999999999999998766  7889


Q ss_pred             CCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee
Q 045304          329 KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~  391 (540)
                      ++|++|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            9999999999999975  478899999999999999998877  8899999999999999986

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=325.83  Aligned_cols=347  Identities=22%  Similarity=0.211  Sum_probs=213.2

Q ss_pred             CCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECc
Q 045304           36 LKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY  115 (540)
Q Consensus        36 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  115 (540)
                      -+.++.+++.++ .+|..+   .++++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus        13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            357888888887 788755   3688999999999888778888889999999999998888888888888888888888


Q ss_pred             CccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccC
Q 045304          116 NNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG  195 (540)
Q Consensus       116 ~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  195 (540)
                      +|.++..+     +..+.++++|++|++++|.+.+..+ ..+                         ..+++|++|++++
T Consensus        89 ~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~-------------------------~~l~~L~~L~l~~  137 (477)
T 2id5_A           89 SNRLKLIP-----LGVFTGLSNLTKLDISENKIVILLD-YMF-------------------------QDLYNLKSLEVGD  137 (477)
T ss_dssp             SSCCCSCC-----TTSSTTCTTCCEEECTTSCCCEECT-TTT-------------------------TTCTTCCEEEECC
T ss_pred             CCcCCccC-----cccccCCCCCCEEECCCCccccCCh-hHc-------------------------cccccCCEEECCC
Confidence            88887652     2346677777777777777765544 333                         4444444444444


Q ss_pred             CccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CC
Q 045304          196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IP  274 (540)
Q Consensus       196 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip  274 (540)
                      |.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+ +|
T Consensus       138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred             CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence            44444444444445555555555555444333344455555555555555554444445555555555555544333 44


Q ss_pred             ccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCC
Q 045304          275 LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIS  354 (540)
Q Consensus       275 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  354 (540)
                      .......+|++|++++|.+.+..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++
T Consensus       218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence            44444445555555555555443345555666666666666666555555666666666666666666666666666666


Q ss_pred             CCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC
Q 045304          355 LKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP  417 (540)
Q Consensus       355 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~  417 (540)
                      |+.|++++|++++..+..|..+++|+.|++++|++.+..+..+.+.......+.++...|..|
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            666666666666555555566666666666666666544332222222233444555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8e-38  Score=332.44  Aligned_cols=389  Identities=21%  Similarity=0.188  Sum_probs=309.5

Q ss_pred             CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA   82 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l   82 (540)
                      |.+|.++++|++|+|++|++++..|.+|.++++|++|+|++|.++ .+|...|.++++|++|++++|.+++..+..|+++
T Consensus        69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L  147 (635)
T 4g8a_A           69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  147 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred             HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence            357999999999999999999888889999999999999999998 7888777999999999999999998777789999


Q ss_pred             CCCCEEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCc-c---------------------ccccCCCCCCCC
Q 045304           83 SKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDL-N---------------------FLSSLSNCKTLT  139 (540)
Q Consensus        83 ~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~---------------------~~~~l~~l~~L~  139 (540)
                      ++|++|++++|.+.+. .|..++.+++|++|++++|.+++..... .                     ++........++
T Consensus       148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~  227 (635)
T 4g8a_A          148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH  227 (635)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred             cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence            9999999999999764 5788899999999999999887642110 0                     000000111112


Q ss_pred             EEECcCCCCCcc----------------------------------------------------------CC--------
Q 045304          140 YIDLSDNPLDGI----------------------------------------------------------LP--------  153 (540)
Q Consensus       140 ~L~l~~n~l~~~----------------------------------------------------------~~--------  153 (540)
                      .+++.+|.....                                                          ..        
T Consensus       228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~  307 (635)
T 4g8a_A          228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN  307 (635)
T ss_dssp             EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred             hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence            222222211000                                                          00        


Q ss_pred             -------------ccccccccccCcEEEccCCcceecCC-------------------hhccCCCCCCeeeccCCcccc-
Q 045304          154 -------------GTSVGNLSHSLEYFYMPNCNVSGGIP-------------------EEISNLTNLIIIYLGGNKLNG-  200 (540)
Q Consensus       154 -------------~~~~~~l~~~L~~L~l~~~~~~~~~~-------------------~~l~~l~~L~~L~l~~n~l~~-  200 (540)
                                   ...+... ..++.|++.+|.+.+..+                   .....+++|+.++++.|.+.. 
T Consensus       308 l~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~  386 (635)
T 4g8a_A          308 VSSFSLVSVTIERVKDFSYN-FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK  386 (635)
T ss_dssp             CSEEEEESCEEEECGGGGSC-CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred             cccccccccccccccccccc-hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence                         0000111 346666666665543221                   123457889999999998753 


Q ss_pred             -ccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccC-ccCCCCCCCCEeeCCCCCCCC-CCccc
Q 045304          201 -SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTS-IPLTF  277 (540)
Q Consensus       201 -~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-ip~~~  277 (540)
                       ..+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+......+ ..|..+++++.++++.|.+.. .+..+
T Consensus       387 ~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          387 GCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             EECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             cccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence             455667788999999999998874 55678899999999999887765544 567889999999999999988 45577


Q ss_pred             cCCCCCcEEECCCCccc-CCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCC
Q 045304          278 WNLKDILYLNFSSNFLT-GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLK  356 (540)
Q Consensus       278 ~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  356 (540)
                      ..++.++.|++++|.+. +..|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|+
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence            88999999999999754 45788899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCcCccccCccccCC-CCCCeEEcccCcceeeCC
Q 045304          357 SLNLSNNNLSGTIPVSLEKL-SYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       357 ~L~l~~n~l~~~~~~~~~~~-~~L~~l~l~~n~l~~~~p  394 (540)
                      +|++++|++++..|..+..+ ++|+.|++++|++.+.+.
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999999999999888 689999999999998765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.2e-38  Score=316.67  Aligned_cols=337  Identities=27%  Similarity=0.362  Sum_probs=242.4

Q ss_pred             CCCcccCCCCCCCEEeccCcccccCCCccccCCCCC-------------CEEEcccCcCccccchhhhcCCCCCCEEEcc
Q 045304            1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTL-------------KVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR   67 (540)
Q Consensus         1 ~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~   67 (540)
                      +||++++++++|++|++++|.+.+.+|..++.+.+|             ++|++++|.++ .+|..    .++|+.|+++
T Consensus        25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~----~~~L~~L~l~   99 (454)
T 1jl5_A           25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL----PPHLESLVAS   99 (454)
T ss_dssp             ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC----CTTCSEEECC
T ss_pred             hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC----cCCCCEEEcc
Confidence            478888888888888888888888888888887764             88888888887 45542    4788899999


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCC
Q 045304           68 SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP  147 (540)
Q Consensus        68 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~  147 (540)
                      +|.+++ +|..   .++|++|++++|.+++. +..   .++|++|++++|.+++      ++ .+.++++|++|++++|.
T Consensus       100 ~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~------lp-~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A          100 CNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK------LP-ELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             SSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS------CC-CCTTCTTCCEEECCSSC
T ss_pred             CCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC------Cc-ccCCCCCCCEEECCCCc
Confidence            888886 6643   37888899988888752 221   2689999999998876      33 48888999999999998


Q ss_pred             CCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCC
Q 045304          148 LDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP  227 (540)
Q Consensus       148 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  227 (540)
                      +.+ +| ..    ..+|++|++++|.+.+ +| .+..+++|++|++++|++++ +|..   .++|++|++++|.+. .+|
T Consensus       165 l~~-lp-~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp  231 (454)
T 1jl5_A          165 LKK-LP-DL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP  231 (454)
T ss_dssp             CSC-CC-CC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             Ccc-cC-CC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc
Confidence            876 33 22    2589999999998886 56 58889999999999998885 4432   258899999999888 567


Q ss_pred             ccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCc
Q 045304          228 NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVL  307 (540)
Q Consensus       228 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  307 (540)
                      . +..+++|++|++++|++++ +|..   +++|+.|++++|.++++|..   +++|++|++++|.+.+. |.   ..++|
T Consensus       232 ~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L  299 (454)
T 1jl5_A          232 E-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL-SE---LPPNL  299 (454)
T ss_dssp             C-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE-SC---CCTTC
T ss_pred             c-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc-cC---cCCcC
Confidence            4 8889999999999998875 4442   47889999999998888764   37788888888888762 11   11466


Q ss_pred             ceEEcccceeeecCccccccC-CCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEccc
Q 045304          308 VGIDFSVNNFSGVIPTTIGSL-KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF  386 (540)
Q Consensus       308 ~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~  386 (540)
                      +.|++++|.+++. +    .+ ++|++|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|+.|++++
T Consensus       300 ~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~  366 (454)
T 1jl5_A          300 YYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEY  366 (454)
T ss_dssp             CEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             CEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCC
Confidence            7777777777642 1    12 467777777777764 4433   466777777777776 3454   356777777777


Q ss_pred             Cccee--eCCC
Q 045304          387 NKLAG--EIPR  395 (540)
Q Consensus       387 n~l~~--~~p~  395 (540)
                      |++++  .+|.
T Consensus       367 N~l~~l~~ip~  377 (454)
T 1jl5_A          367 NPLREFPDIPE  377 (454)
T ss_dssp             SCCSSCCCCCT
T ss_pred             CCCCcCCCChH
Confidence            77766  4553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1e-37  Score=315.28  Aligned_cols=339  Identities=19%  Similarity=0.150  Sum_probs=248.8

Q ss_pred             cccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCC
Q 045304            4 HEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNAS   83 (540)
Q Consensus         4 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~   83 (540)
                      .+++++++|++|++++|.+++. | .++.+++|++|++++|.+++ +|   +..+++|++|++++|.+++. +  +++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~  106 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLT  106 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence            4577889999999999999964 5 68999999999999999984 55   46899999999999999864 3  88999


Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccccc
Q 045304           84 KLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS  163 (540)
Q Consensus        84 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~  163 (540)
                      +|++|++++|.+++. +  ++.+++|++|++++|.+++.        .+..+++|++|++++|...+.++   ++.+ ++
T Consensus       107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l--------~l~~l~~L~~L~l~~n~~~~~~~---~~~l-~~  171 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI--------DVSHNTQLTELDCHLNKKITKLD---VTPQ-TQ  171 (457)
T ss_dssp             TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC--------CCTTCTTCCEEECTTCSCCCCCC---CTTC-TT
T ss_pred             cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee--------ccccCCcCCEEECCCCCcccccc---cccC-Cc
Confidence            999999999999874 3  88999999999999998874        27788999999999997666543   4555 78


Q ss_pred             CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304          164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS  243 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  243 (540)
                      |++|++++|++++ +|  +..+++|+.|++++|.+++.   .+..+++|+.|++++|.+++ +|  +..+++|++|++++
T Consensus       172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred             CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence            9999999999987 44  88899999999999999865   37889999999999999997 56  88899999999999


Q ss_pred             CCCccccCccCCCCCCCCEeeCCCCCCCC-----------CCccccCCCCCcEEECCCCcccCCCccc--------cccc
Q 045304          244 NKFSRSIPACFSNLASLRTLSLGSNELTS-----------IPLTFWNLKDILYLNFSSNFLTGPLPLE--------IENL  304 (540)
Q Consensus       244 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------ip~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l  304 (540)
                      |++++..+.   .+++|+.|+++.|.++.           +|  +..+++|+.|++++|...+.+|..        +..+
T Consensus       243 N~l~~~~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~  317 (457)
T 3bz5_A          243 NPLTELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN  317 (457)
T ss_dssp             SCCSCCCCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred             CcCCCcCHH---HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence            999876543   45555555555443332           22  345667777777777665555432        2333


Q ss_pred             cCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEc
Q 045304          305 KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNL  384 (540)
Q Consensus       305 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l  384 (540)
                      ++|+.|++++|++++. +  +..+++|+.|++++|++++        ++.|..|++++|.++|.     ..+..|..+++
T Consensus       318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l  381 (457)
T 3bz5_A          318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETL  381 (457)
T ss_dssp             TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred             ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcccc
Confidence            4444555555555442 1  4444555555555555443        12333344444444443     13345677888


Q ss_pred             ccCcceeeCCCC
Q 045304          385 SFNKLAGEIPRG  396 (540)
Q Consensus       385 ~~n~l~~~~p~~  396 (540)
                      ++|+++|.+|..
T Consensus       382 ~~N~l~g~ip~~  393 (457)
T 3bz5_A          382 TNNSLTIAVSPD  393 (457)
T ss_dssp             BTTBEEEECCTT
T ss_pred             ccCcEEEEcChh
Confidence            888888888853

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.2e-37  Score=312.21  Aligned_cols=329  Identities=29%  Similarity=0.446  Sum_probs=287.4

Q ss_pred             CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304            2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN   81 (540)
Q Consensus         2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~   81 (540)
                      +| .+..+++|++|+|++|.+++..+  +..+++|++|++++|.+.+ ++.  +..+++|++|++++|.+++.. . +.+
T Consensus        61 l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~-~-~~~  132 (466)
T 1o6v_A           61 ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDID-P-LKN  132 (466)
T ss_dssp             CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG-G-GTT
T ss_pred             Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCCh-H-HcC
Confidence            44 47889999999999999996544  9999999999999999984 554  479999999999999998653 3 899


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304           82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS  161 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  161 (540)
                      +++|++|++++|.+.+. + .+..+++|++|+++ +.+...       ..+.++++|+.|++++|.+.+.   ..+..+ 
T Consensus       133 l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~---~~l~~l-  198 (466)
T 1o6v_A          133 LTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-------KPLANLTTLERLDISSNKVSDI---SVLAKL-  198 (466)
T ss_dssp             CTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-------GGGTTCTTCCEEECCSSCCCCC---GGGGGC-
T ss_pred             CCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-------hhhccCCCCCEEECcCCcCCCC---hhhccC-
Confidence            99999999999999863 3 58999999999996 444432       2388999999999999998765   346666 


Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL  241 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  241 (540)
                      ++|++|++++|.+.+..|  ++.+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  272 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  272 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence            799999999999987655  78899999999999999853  368899999999999999987654  889999999999


Q ss_pred             CCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecC
Q 045304          242 GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVI  321 (540)
Q Consensus       242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  321 (540)
                      ++|.+++..+  +..+++|+.|++++|.+++++. +..+++|+.|++++|++.+..|  +..+++|+.|++++|.+++. 
T Consensus       273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-  346 (466)
T 1o6v_A          273 GANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-  346 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred             CCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence            9999987554  8899999999999999999776 7889999999999999998766  78899999999999999875 


Q ss_pred             ccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304          322 PTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                       ..+..+++|+.|++++|.+++..|  +..+++|+.|++++|.+++
T Consensus       347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          347 -SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             -hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence             478899999999999999998877  8899999999999999996

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=315.52  Aligned_cols=347  Identities=20%  Similarity=0.205  Sum_probs=241.4

Q ss_pred             CCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 045304           12 LELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELG   91 (540)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~   91 (540)
                      -+.++.++++++ .+|..+  .++++.|+|++|.++ .++...+..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus        13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            468889998888 567655  368999999999998 4555555899999999999999998889999999999999999


Q ss_pred             CCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccC
Q 045304           92 DNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPN  171 (540)
Q Consensus        92 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~  171 (540)
                      +|.+++..+..|.++++|++|++++|.+...     .+..+..+++|+.|++++|.+.+..+ ..+..            
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~------------  150 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVIL-----LDYMFQDLYNLKSLEVGDNDLVYISH-RAFSG------------  150 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEEECCTTCCEECT-TSSTT------------
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccC-----ChhHccccccCCEEECCCCccceeCh-hhccC------------
Confidence            9999977777899999999999999999876     45568889999999999988876544 33443            


Q ss_pred             CcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccC
Q 045304          172 CNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP  251 (540)
Q Consensus       172 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  251 (540)
                                   +++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.+|
T Consensus       151 -------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          151 -------------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             -------------CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred             -------------CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence                         4444555555554444333344455555555555555554444455555555555555555554555


Q ss_pred             ccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCC
Q 045304          252 ACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKG  330 (540)
Q Consensus       252 ~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  330 (540)
                      .......+|+.|++++|.++.+|. .+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.+++..|..|..+++
T Consensus       218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence            444444566666666666666553 4556666666666666666666666677777777777777777777777777777


Q ss_pred             CcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          331 LQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      |+.|+|++|.+++..+..|..+++|+.|++++|++....+..+ -......+++.++...+..|
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEES
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh-HHhhhhccccCccCceeCCc
Confidence            7777777777776666667777778888888887764332111 11223334455555555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2e-36  Score=305.59  Aligned_cols=350  Identities=27%  Similarity=0.336  Sum_probs=268.9

Q ss_pred             CCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCC-------------CCEEEccCCcccc
Q 045304            7 GNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN-------------LEVLRMRSNNFCG   73 (540)
Q Consensus         7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~   73 (540)
                      .+.++|++|++++|.+ +.+|++++++++|++|++++|.+.|.+|..+ ..+++             ++.|++++|.+++
T Consensus         8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            3568999999999999 7999999999999999999999999999887 56765             4999999999985


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCC
Q 045304           74 TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP  153 (540)
Q Consensus        74 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  153 (540)
                       +|..   .++|++|++++|.+++ +|..   +++|++|++++|.+++.+.   +      .++|++|++++|.+.+ +|
T Consensus        86 -lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~---~------~~~L~~L~L~~n~l~~-lp  147 (454)
T 1jl5_A           86 -LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD---L------PPLLEYLGVSNNQLEK-LP  147 (454)
T ss_dssp             -CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS---C------CTTCCEEECCSSCCSS-CC
T ss_pred             -CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC---C------CCCCCEEECcCCCCCC-Cc
Confidence             4542   4789999999999997 5643   4899999999999887432   1      2689999999999987 55


Q ss_pred             ccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCC
Q 045304          154 GTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRL  233 (540)
Q Consensus       154 ~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l  233 (540)
                        .++.+ ++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|...   
T Consensus       148 --~~~~l-~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---  214 (454)
T 1jl5_A          148 --ELQNS-SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---  214 (454)
T ss_dssp             --CCTTC-TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---
T ss_pred             --ccCCC-CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---
Confidence              47777 899999999999985 66543   589999999999996 56 58999999999999999986 55432   


Q ss_pred             CCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcc
Q 045304          234 TELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS  313 (540)
Q Consensus       234 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  313 (540)
                      ++|++|++++|.++ .+|. +..+++|+.|++++|.++++|..   +++|++|++++|.+.+ +|..   +++|+.|+++
T Consensus       215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls  285 (454)
T 1jl5_A          215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS  285 (454)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred             CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence            58999999999998 6774 89999999999999999998864   4789999999999986 5543   4789999999


Q ss_pred             cceeeecCccccccCCCCcEEeCcCccCcccCCcccCCC-CCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceee
Q 045304          314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL-ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGE  392 (540)
Q Consensus       314 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  392 (540)
                      +|.+++. |..   .++|+.|++++|.+++ ++    .+ ++|+.|++++|++++ +|..   +++|+.|++++|.++ .
T Consensus       286 ~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~  351 (454)
T 1jl5_A          286 ENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-E  351 (454)
T ss_dssp             SSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred             CCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-c
Confidence            9999873 221   2689999999999985 22    23 589999999999996 6654   589999999999998 4


Q ss_pred             CCCCCCCCCCCcccccCCCCCC
Q 045304          393 IPRGGSFGNFSAESFEGNELLC  414 (540)
Q Consensus       393 ~p~~~~~~~~~~~~~~~n~~~c  414 (540)
                      +|.  .+.++...++.+|...+
T Consensus       352 lp~--~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          352 VPE--LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CCC--CCTTCCEEECCSSCCSS
T ss_pred             ccc--hhhhccEEECCCCCCCc
Confidence            676  56788888888887655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.3e-35  Score=285.56  Aligned_cols=255  Identities=33%  Similarity=0.566  Sum_probs=234.8

Q ss_pred             ccCcEEEccCCccee--cCChhccCCCCCCeeeccC-CccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCe
Q 045304          162 HSLEYFYMPNCNVSG--GIPEEISNLTNLIIIYLGG-NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE  238 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  238 (540)
                      .+++.|++++|.+.+  .+|+.+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467888888888888  8888899999999999995 8898889989999999999999999999889999999999999


Q ss_pred             EEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCC-CCcEEECCCCcccCCCccccccccCcceEEcccce
Q 045304          239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLK-DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNN  316 (540)
Q Consensus       239 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  316 (540)
                      |++++|.+++.+|..|..+++|++|++++|.+++ +|..+..++ +|++|++++|.+.+.+|..+..+. |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            9999999998899999999999999999999985 888888888 999999999999999999999887 9999999999


Q ss_pred             eeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC
Q 045304          317 FSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG  396 (540)
Q Consensus       317 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~  396 (540)
                      +++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9999999999999999999999999977776 788999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcccccCCCCCCCCCC
Q 045304          397 GSFGNFSAESFEGNELLCGSPN  418 (540)
Q Consensus       397 ~~~~~~~~~~~~~n~~~c~~~~  418 (540)
                      ..+..+....+.+|+++|+.|.
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTTS
T ss_pred             ccccccChHHhcCCCCccCCCC
Confidence            8888999999999999999764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1e-34  Score=289.15  Aligned_cols=311  Identities=21%  Similarity=0.236  Sum_probs=211.7

Q ss_pred             CCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304           32 NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK  111 (540)
Q Consensus        32 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  111 (540)
                      .++++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            3466677777776665 566665566677777777777666555556666777777777777766666666667777777


Q ss_pred             EECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCee
Q 045304          112 VTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIII  191 (540)
Q Consensus       112 L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  191 (540)
                      |++++|.++..+.     ..+.++++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+++.   .+..+++|+.|
T Consensus       122 L~L~~n~l~~l~~-----~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l-~~L~~L~l~~n~l~~~---~~~~l~~L~~L  191 (390)
T 3o6n_A          122 LVLERNDLSSLPR-----GIFHNTPKLTTLSMSNNNLERIED-DTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHA  191 (390)
T ss_dssp             EECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCBCCT-TTTSSC-TTCCEEECCSSCCSBC---CGGGCTTCSEE
T ss_pred             EECCCCccCcCCH-----HHhcCCCCCcEEECCCCccCccCh-hhccCC-CCCCEEECCCCcCCcc---cccccccccee
Confidence            7777776665321     224666677777777776665544 445555 5677777777766543   24556677777


Q ss_pred             eccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCC
Q 045304          192 YLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT  271 (540)
Q Consensus       192 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  271 (540)
                      ++++|.+++     +...++|++|++++|.+... |..  ..++|+.|++++|.+++.  ..+..+++|+.|++++|.++
T Consensus       192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          192 NVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE  261 (390)
T ss_dssp             ECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence            777776653     23345677777777776643 222  236777777777777653  45677777777777777777


Q ss_pred             CC-CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccC
Q 045304          272 SI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG  350 (540)
Q Consensus       272 ~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  350 (540)
                      ++ |..+..+++|++|++++|++.+ +|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.++.. +  +.
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~  336 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS  336 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred             CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence            73 5567777777777777777764 4555566778888888888887 4566677788889999999888744 3  67


Q ss_pred             CCCCCCEEECCCCcCccc
Q 045304          351 DLISLKSLNLSNNNLSGT  368 (540)
Q Consensus       351 ~l~~L~~L~l~~n~l~~~  368 (540)
                      .+++|+.|++++|++++.
T Consensus       337 ~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          337 THHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             TTCCCSEEECCSSCEEHH
T ss_pred             hhccCCEEEcCCCCccch
Confidence            788899999999998854

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.7e-35  Score=290.45  Aligned_cols=336  Identities=19%  Similarity=0.182  Sum_probs=284.6

Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCC
Q 045304           57 RLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCK  136 (540)
Q Consensus        57 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~  136 (540)
                      .+++++.|++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+.     .+..+.+++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~  117 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVFQNVP  117 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCT
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-----CHHHhcCCC
Confidence            578999999999999865555678999999999999999988888999999999999999999886     445688999


Q ss_pred             CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeee
Q 045304          137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLS  216 (540)
Q Consensus       137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  216 (540)
                      +|++|++++|.+....+ ..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+++.   .+..+++|+.|+
T Consensus       118 ~L~~L~L~~n~l~~l~~-~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~  192 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPR-GIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN  192 (390)
T ss_dssp             TCCEEECCSSCCCCCCT-TTTTTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred             CCCEEECCCCccCcCCH-HHhcCC-CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence            99999999999986544 556667 8999999999999988888899999999999999999864   356789999999


Q ss_pred             eeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCC
Q 045304          217 LADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP  296 (540)
Q Consensus       217 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~  296 (540)
                      +++|.+++     +...++|++|++++|.+... |..  ..++|+.|++++|.+++.+ .+..+++|++|++++|.+.+.
T Consensus       193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~  263 (390)
T 3o6n_A          193 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKI  263 (390)
T ss_dssp             CCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEE
T ss_pred             cccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCc
Confidence            99998874     34456899999999999865 332  3579999999999999874 678899999999999999998


Q ss_pred             CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCC
Q 045304          297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL  376 (540)
Q Consensus       297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  376 (540)
                      .|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++.. +  +..+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~  338 (390)
T 3o6n_A          264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTH  338 (390)
T ss_dssp             ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTT
T ss_pred             ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhh
Confidence            89999999999999999999986 5666778899999999999998 5677788899999999999999854 3  6788


Q ss_pred             CCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC
Q 045304          377 SYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP  417 (540)
Q Consensus       377 ~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~  417 (540)
                      ++|+.|++++|++.+.... ..+..+....+.+++..|.++
T Consensus       339 ~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          339 HTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             CCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             ccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence            9999999999999875322 234444555566777777653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.9e-35  Score=293.51  Aligned_cols=326  Identities=20%  Similarity=0.223  Sum_probs=249.4

Q ss_pred             CcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 045304           19 HNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF   98 (540)
Q Consensus        19 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~   98 (540)
                      .....+..+..++++++|++|++++|.+++ +| .+ ..+++|++|++++|.+++. |  ++.+++|++|++++|.+++.
T Consensus        27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l-~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~  100 (457)
T 3bz5_A           27 AFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GI-EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL  100 (457)
T ss_dssp             HTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TG-GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC
T ss_pred             hcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hh-cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee
Confidence            344455556678899999999999999984 56 33 7899999999999999964 4  88999999999999999875


Q ss_pred             CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecC
Q 045304           99 IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI  178 (540)
Q Consensus        99 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~  178 (540)
                       +  ++++++|++|++++|.+++.      +  +..+++|++|++++|.+++. +   ++.+ ++|++|++++|...+.+
T Consensus       101 -~--~~~l~~L~~L~L~~N~l~~l------~--~~~l~~L~~L~l~~N~l~~l-~---l~~l-~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          101 -D--VTPLTKLTYLNCDTNKLTKL------D--VSQNPLLTYLNCARNTLTEI-D---VSHN-TQLTELDCHLNKKITKL  164 (457)
T ss_dssp             -C--CTTCTTCCEEECCSSCCSCC------C--CTTCTTCCEEECTTSCCSCC-C---CTTC-TTCCEEECTTCSCCCCC
T ss_pred             -e--cCCCCcCCEEECCCCcCCee------c--CCCCCcCCEEECCCCcccee-c---cccC-CcCCEEECCCCCccccc
Confidence             3  89999999999999999874      2  78899999999999999884 2   5556 78999999999777666


Q ss_pred             ChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCC
Q 045304          179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLA  258 (540)
Q Consensus       179 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  258 (540)
                        .+..+++|++|++++|++++ +|  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|  +..++
T Consensus       165 --~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~  233 (457)
T 3bz5_A          165 --DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLT  233 (457)
T ss_dssp             --CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred             --ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccC
Confidence              47889999999999999996 44  78899999999999999875   38899999999999999997 55  88899


Q ss_pred             CCCEeeCCCCCCCCCCccccCCCCCcEE----------ECCCCcccCCCccccccccCcceEEcccceeeecCccc----
Q 045304          259 SLRTLSLGSNELTSIPLTFWNLKDILYL----------NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTT----  324 (540)
Q Consensus       259 ~L~~L~l~~n~l~~ip~~~~~l~~L~~L----------~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----  324 (540)
                      +|+.|++++|.++++|.  ..+++|+.|          ++++|.+.+.+|  +..+++|+.|++++|...+.+|..    
T Consensus       234 ~L~~L~l~~N~l~~~~~--~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L  309 (457)
T 3bz5_A          234 QLTYFDCSVNPLTELDV--STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGI  309 (457)
T ss_dssp             TCSEEECCSSCCSCCCC--TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred             CCCEEEeeCCcCCCcCH--HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcc
Confidence            99999999999999763  345555554          444554444444  345667777777777665555432    


Q ss_pred             ----cccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceee
Q 045304          325 ----IGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGE  392 (540)
Q Consensus       325 ----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  392 (540)
                          +..+++|++|++++|++++. +  ++.+++|+.|++++|++++        ++.|..++++.|.+.|.
T Consensus       310 ~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~  370 (457)
T 3bz5_A          310 TELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE  370 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred             eEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence                33445566666666666652 2  5556666666666666653        23445555666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.2e-35  Score=305.44  Aligned_cols=335  Identities=20%  Similarity=0.197  Sum_probs=227.9

Q ss_pred             CCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304           33 VSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKV  112 (540)
Q Consensus        33 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  112 (540)
                      +.+++.|++++|.+. .+|..++..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            455566666665554 4555554556666666666666555555555555666666666665555555555555555555


Q ss_pred             ECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeee
Q 045304          113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIY  192 (540)
Q Consensus       113 ~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  192 (540)
                      +|++|.++..+.     ..+.++++|++|+++                          +|.+.+..|..+..+++|++|+
T Consensus       129 ~L~~n~l~~l~~-----~~~~~l~~L~~L~Ls--------------------------~N~l~~~~~~~~~~l~~L~~L~  177 (597)
T 3oja_B          129 VLERNDLSSLPR-----GIFHNTPKLTTLSMS--------------------------NNNLERIEDDTFQATTSLQNLQ  177 (597)
T ss_dssp             ECCSSCCCCCCT-----TTTTTCTTCCEEECC--------------------------SSCCCBCCTTTTTTCTTCCEEE
T ss_pred             EeeCCCCCCCCH-----HHhccCCCCCEEEee--------------------------CCcCCCCChhhhhcCCcCcEEE
Confidence            555555554311     123444445555554                          4444444555566667777777


Q ss_pred             ccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC
Q 045304          193 LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS  272 (540)
Q Consensus       193 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  272 (540)
                      +++|.+++..   +..+++|+.|++++|.+++     +...++|+.|++++|.+....+..   .++|+.|++++|.+++
T Consensus       178 L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~  246 (597)
T 3oja_B          178 LSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD  246 (597)
T ss_dssp             CTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC
T ss_pred             CcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC
Confidence            7777766432   4456677777777776653     234457788888888776543322   3578888888888887


Q ss_pred             CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCC
Q 045304          273 IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL  352 (540)
Q Consensus       273 ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  352 (540)
                      . ..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus       247 ~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l  323 (597)
T 3oja_B          247 T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  323 (597)
T ss_dssp             C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             C-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence            4 467778888888888888888888888888999999999998886 4666777889999999999998 677778888


Q ss_pred             CCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC
Q 045304          353 ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP  417 (540)
Q Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~  417 (540)
                      ++|+.|++++|.+++. |  +..+++|+.|++++|++.+.... ..+..+....+.+++..|+.+
T Consensus       324 ~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          324 DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            9999999999999854 3  66788999999999999875432 234455566677888888763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.2e-34  Score=281.05  Aligned_cols=306  Identities=25%  Similarity=0.383  Sum_probs=201.6

Q ss_pred             cCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 045304           31 FNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLN  110 (540)
Q Consensus        31 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  110 (540)
                      ..+++|++|++++|.+. .++.  +..+++|++|++++|.+++. +. +..+++|++|++++|.+++.  +.+.++++|+
T Consensus        41 ~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           41 EELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             hhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            34555555555555554 3433  23455555555555555532 22 55555555555555555432  2355556666


Q ss_pred             EEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCe
Q 045304          111 KVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLII  190 (540)
Q Consensus       111 ~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  190 (540)
                      +|++++|.+...      + .+..+++|+.|++++|.....++  .+..+ ++|++|++++|.+.+..+  +..+++|++
T Consensus       114 ~L~l~~n~i~~~------~-~~~~l~~L~~L~l~~n~~~~~~~--~~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          114 ELYLNEDNISDI------S-PLANLTKMYSLNLGANHNLSDLS--PLSNM-TGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             EEECTTSCCCCC------G-GGTTCTTCCEEECTTCTTCCCCG--GGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             EEECcCCcccCc------h-hhccCCceeEEECCCCCCccccc--chhhC-CCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            666665555542      1 15555566666666654433332  24444 556666666666553322  667777777


Q ss_pred             eeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCC
Q 045304          191 IYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNEL  270 (540)
Q Consensus       191 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  270 (540)
                      |++++|.+.+..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+
T Consensus       182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence            8887777764333  6677788888888887775433  6777888888888888775443  77788888888888888


Q ss_pred             CCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccC
Q 045304          271 TSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG  350 (540)
Q Consensus       271 ~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  350 (540)
                      ++++ .+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|  +.
T Consensus       256 ~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~  330 (347)
T 4fmz_A          256 SDIN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA  330 (347)
T ss_dssp             CCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred             CCCh-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence            7764 567778888888888888754  357788888889999988888888888888999999999999887666  77


Q ss_pred             CCCCCCEEECCCCcCc
Q 045304          351 DLISLKSLNLSNNNLS  366 (540)
Q Consensus       351 ~l~~L~~L~l~~n~l~  366 (540)
                      .+++|+.|++++|.++
T Consensus       331 ~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          331 SLSKMDSADFANQVIK  346 (347)
T ss_dssp             GCTTCSEESSSCC---
T ss_pred             hhhccceeehhhhccc
Confidence            8889999999998875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.8e-34  Score=280.56  Aligned_cols=306  Identities=24%  Similarity=0.359  Sum_probs=266.0

Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCC
Q 045304           56 VRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNC  135 (540)
Q Consensus        56 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l  135 (540)
                      ..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.++..       ..+..+
T Consensus        41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-------~~~~~l  109 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-------SALQNL  109 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-------GGGTTC
T ss_pred             hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-------hHHcCC
Confidence            468999999999999884 44 48899999999999999986543  99999999999999988864       358899


Q ss_pred             CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304          136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL  215 (540)
Q Consensus       136 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  215 (540)
                      ++|++|++++|.+.+..   .+..+ ++|++|++++|.....++. +..+++|++|++++|.+.+..+  +..+++|++|
T Consensus       110 ~~L~~L~l~~n~i~~~~---~~~~l-~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L  182 (347)
T 4fmz_A          110 TNLRELYLNEDNISDIS---PLANL-TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL  182 (347)
T ss_dssp             TTCSEEECTTSCCCCCG---GGTTC-TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             CcCCEEECcCCcccCch---hhccC-CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence            99999999999998753   26666 7999999999977665554 8999999999999999885544  8899999999


Q ss_pred             eeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccC
Q 045304          216 SLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTG  295 (540)
Q Consensus       216 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~  295 (540)
                      ++++|.+.+. +. +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++++. +..+++|++|++++|.+.+
T Consensus       183 ~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          183 SLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             ECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             EccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC
Confidence            9999999854 33 8899999999999999986554  8889999999999999999877 8899999999999999986


Q ss_pred             CCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccC
Q 045304          296 PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEK  375 (540)
Q Consensus       296 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  375 (540)
                      .  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|  +..
T Consensus       258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred             C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence            4  4688899999999999999864  458889999999999999999888999999999999999999997766  788


Q ss_pred             CCCCCeEEcccCcce
Q 045304          376 LSYLEDLNLSFNKLA  390 (540)
Q Consensus       376 ~~~L~~l~l~~n~l~  390 (540)
                      +++|+.+++++|+++
T Consensus       332 l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          332 LSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEESSSCC---
T ss_pred             hhccceeehhhhccc
Confidence            999999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-34  Score=302.66  Aligned_cols=310  Identities=18%  Similarity=0.188  Sum_probs=241.9

Q ss_pred             CCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304            8 NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSL   87 (540)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~   87 (540)
                      .+++++.|++++|.+....+..|..+++|++|++++|.+++ ++...+..+++|++|+|++|.+++..|..|+++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            35789999999999997766778999999999999999984 55544589999999999999999888888999999999


Q ss_pred             EEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEE
Q 045304           88 LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYF  167 (540)
Q Consensus        88 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L  167 (540)
                      |+|++|.+++..+..|+++++|++|++++|.+.+.     .+..+..+++|++|++++|.+.+..    ++.+ ++|+.|
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l-~~L~~L  197 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-----EDDTFQATTSLQNLQLSSNRLTHVD----LSLI-PSLFHA  197 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-----CTTTTTTCTTCCEEECTTSCCSBCC----GGGC-TTCSEE
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-----ChhhhhcCCcCcEEECcCCCCCCcC----hhhh-hhhhhh
Confidence            99999999977667789999999999999999886     4556899999999999999998752    3344 788999


Q ss_pred             EccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc
Q 045304          168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS  247 (540)
Q Consensus       168 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  247 (540)
                      ++++|.+.+     +...++|+.|++++|.+....+. +  .++|+.|++++|.+++  +..+..+++|+.|+|++|.++
T Consensus       198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE  267 (597)
T ss_dssp             ECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred             hcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence            999888764     34456788899998888744332 2  3578888888888876  366788888888888888888


Q ss_pred             cccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccccc
Q 045304          248 RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS  327 (540)
Q Consensus       248 ~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  327 (540)
                      +..|..|..+++|+.|++++|.++++|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+++..   +..
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~  343 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LST  343 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCT
T ss_pred             CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhh
Confidence            88888888888888888888888877776666777777777777766 44555555566666666666554321   333


Q ss_pred             CCCCcEEeCcCccCc
Q 045304          328 LKGLQYLFVGYNRLQ  342 (540)
Q Consensus       328 l~~L~~L~l~~n~l~  342 (540)
                      +++|+.|++++|.+.
T Consensus       344 ~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          344 HHTLKNLTLSHNDWD  358 (597)
T ss_dssp             TCCCSEEECCSSCEE
T ss_pred             cCCCCEEEeeCCCCC
Confidence            444555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.7e-34  Score=273.70  Aligned_cols=252  Identities=30%  Similarity=0.475  Sum_probs=224.0

Q ss_pred             CCCCEEECcCCCCCc--cCCccccccccccCcEEEccC-CcceecCChhccCCCCCCeeeccCCccccccCccccCCCCC
Q 045304          136 KTLTYIDLSDNPLDG--ILPGTSVGNLSHSLEYFYMPN-CNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKL  212 (540)
Q Consensus       136 ~~L~~L~l~~n~l~~--~~~~~~~~~l~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  212 (540)
                      .+++.|++++|.+.+  .+| ..+..+ ++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~-~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIP-SSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECC-GGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccC-hhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            467888888888887  677 677777 7888888884 88888888889999999999999999988888889999999


Q ss_pred             CeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCC-CCCEeeCCCCCCCC-CCccccCCCCCcEEECCC
Q 045304          213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLA-SLRTLSLGSNELTS-IPLTFWNLKDILYLNFSS  290 (540)
Q Consensus       213 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~  290 (540)
                      ++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++ +|..+..++ |++|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            9999999999988999999999999999999999888898888888 89999999999985 788888876 99999999


Q ss_pred             CcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccC
Q 045304          291 NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIP  370 (540)
Q Consensus       291 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  370 (540)
                      |.+.+..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            999999999999999999999999999977766 7888999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCeEEcccCcceee
Q 045304          371 VSLEKLSYLEDLNLSFNKLAGE  392 (540)
Q Consensus       371 ~~~~~~~~L~~l~l~~n~l~~~  392 (540)
                      .. ..+++|+.+++++|+..+.
T Consensus       286 ~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSEEES
T ss_pred             CC-ccccccChHHhcCCCCccC
Confidence            86 7899999999999985443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.8e-32  Score=266.43  Aligned_cols=295  Identities=20%  Similarity=0.208  Sum_probs=170.7

Q ss_pred             CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 045304           35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL  114 (540)
Q Consensus        35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  114 (540)
                      +++.++++++.++ .+|..+   .++|+.|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            6777777777776 566544   367777777777777666666777777777777777777666777777777777777


Q ss_pred             cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcce--ecCChhccCCCCCCeee
Q 045304          115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS--GGIPEEISNLTNLIIIY  192 (540)
Q Consensus       115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~  192 (540)
                      ++|.++..+      ..+.  ++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+.  +..+..+..+++|++|+
T Consensus       108 s~n~l~~l~------~~~~--~~L~~L~l~~n~l~~~~~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          108 SKNQLKELP------EKMP--KTLQELRVHENEITKVRK-SVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             CSSCCSBCC------SSCC--TTCCEEECCSSCCCBBCH-HHHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             CCCcCCccC------hhhc--ccccEEECCCCcccccCH-hHhcCC-ccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence            777766532      2222  566666666666654433 334444 45555555555553  24445555555666666


Q ss_pred             ccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC
Q 045304          193 LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS  272 (540)
Q Consensus       193 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  272 (540)
                      +++|.++. +|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++.
T Consensus       178 l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  254 (330)
T 1xku_A          178 IADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK  254 (330)
T ss_dssp             CCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS
T ss_pred             CCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc
Confidence            66555552 333222  455555555555555545555555555555555555555544455555555555555555555


Q ss_pred             CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcc--cCCcccC
Q 045304          273 IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG--SIPYSIG  350 (540)
Q Consensus       273 ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~  350 (540)
                      +|..+..+++|++|++++|++++..+..+....                  .......++.+++++|.+..  ..|..+.
T Consensus       255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~  316 (330)
T 1xku_A          255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFR  316 (330)
T ss_dssp             CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             CChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccc
Confidence            555555555555555555555433333222110                  00123566777777776653  4456677


Q ss_pred             CCCCCCEEECCCCc
Q 045304          351 DLISLKSLNLSNNN  364 (540)
Q Consensus       351 ~l~~L~~L~l~~n~  364 (540)
                      .+.+++.+++++|+
T Consensus       317 ~~~~l~~l~L~~N~  330 (330)
T 1xku_A          317 CVYVRAAVQLGNYK  330 (330)
T ss_dssp             TCCCGGGEEC----
T ss_pred             cccceeEEEecccC
Confidence            77777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2e-32  Score=266.34  Aligned_cols=287  Identities=21%  Similarity=0.259  Sum_probs=164.4

Q ss_pred             CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 045304           35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL  114 (540)
Q Consensus        35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  114 (540)
                      +++.++++++.++ .+|..+   .++|+.|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            6777888877776 677655   367778888888777666667777778888888877777777777777777777777


Q ss_pred             cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcce--ecCChhccCCCCCCeee
Q 045304          115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS--GGIPEEISNLTNLIIIY  192 (540)
Q Consensus       115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~  192 (540)
                      ++|.++..+      ..+.  ++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+.  +..+..+..+ +|++|+
T Consensus       110 ~~n~l~~l~------~~~~--~~L~~L~l~~n~i~~~~~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~  178 (332)
T 2ft3_A          110 SKNHLVEIP------PNLP--SSLVELRIHDNRIRKVPK-GVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR  178 (332)
T ss_dssp             CSSCCCSCC------SSCC--TTCCEEECCSSCCCCCCS-GGGSSC-SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred             CCCcCCccC------cccc--ccCCEEECCCCccCccCH-hHhCCC-ccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence            777776532      2222  566666666666654333 333434 44555555554443  2333344444 444455


Q ss_pred             ccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC
Q 045304          193 LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS  272 (540)
Q Consensus       193 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  272 (540)
                      +++|++++                         +|..+.  ++|++|++++|.+++..+..|..+++|+.|++++|.+++
T Consensus       179 l~~n~l~~-------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          179 ISEAKLTG-------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             CCSSBCSS-------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             CcCCCCCc-------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            55444442                         333222  344455555555544444444455555555555555544


Q ss_pred             CCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccccc------CCCCcEEeCcCccCc--c
Q 045304          273 IPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS------LKGLQYLFVGYNRLQ--G  343 (540)
Q Consensus       273 ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~  343 (540)
                      ++. .+..+++|++|++++|++. .+|..+..+++|+.|++++|.+++..+..|..      ...|+.|++++|.+.  +
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence            332 3444455555555555554 34444555555555555555555444444432      355777777777766  4


Q ss_pred             cCCcccCCCCCCCEEECCCCc
Q 045304          344 SIPYSIGDLISLKSLNLSNNN  364 (540)
Q Consensus       344 ~~~~~~~~l~~L~~L~l~~n~  364 (540)
                      ..|..+..+++|+.+++++|+
T Consensus       311 ~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          311 VQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCGGGGTTBCCSTTEEC----
T ss_pred             cCcccccccchhhhhhccccc
Confidence            566677777777778777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=6.9e-32  Score=262.49  Aligned_cols=287  Identities=21%  Similarity=0.293  Sum_probs=230.7

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCC
Q 045304           60 NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLT  139 (540)
Q Consensus        60 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~  139 (540)
                      +++.++++++.++ .+|..+  .++|++|++++|.+.+..+..|.++++|++|++++|.++..     .+..+.++++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~  105 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-----HEKAFSPLRKLQ  105 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CGGGSTTCTTCC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-----CHhHhhCcCCCC
Confidence            6888999888887 566655  36888899988888877777888888888888888888764     456678888888


Q ss_pred             EEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeC
Q 045304          140 YIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLAD  219 (540)
Q Consensus       140 ~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  219 (540)
                      +|++++|.+... |                          ..+.  ++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus       106 ~L~L~~n~l~~l-~--------------------------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  156 (332)
T 2ft3_A          106 KLYISKNHLVEI-P--------------------------PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG  156 (332)
T ss_dssp             EEECCSSCCCSC-C--------------------------SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred             EEECCCCcCCcc-C--------------------------cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence            888888877532 2                          1111  5667777777777655555677777777777777


Q ss_pred             cccc--CcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC-ccccCCCCCcEEECCCCcccCC
Q 045304          220 NKLE--GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGP  296 (540)
Q Consensus       220 n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip-~~~~~l~~L~~L~L~~n~l~~~  296 (540)
                      |.++  +..|..+..+ +|++|++++|.+++ +|..+.  ++|+.|++++|.+++++ ..+..+++|++|++++|.+.+.
T Consensus       157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          157 NPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             CccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence            7774  3566777777 89999999999986 555543  79999999999999965 6788999999999999999998


Q ss_pred             CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCC------CCCCCEEECCCCcCc--cc
Q 045304          297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD------LISLKSLNLSNNNLS--GT  368 (540)
Q Consensus       297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~~  368 (540)
                      .+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..      ..+|+.|++++|.+.  +.
T Consensus       233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~  311 (332)
T 2ft3_A          233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV  311 (332)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred             ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence            8889999999999999999998 78888999999999999999999777766654      367899999999987  66


Q ss_pred             cCccccCCCCCCeEEcccCc
Q 045304          369 IPVSLEKLSYLEDLNLSFNK  388 (540)
Q Consensus       369 ~~~~~~~~~~L~~l~l~~n~  388 (540)
                      .|..+..++.|+.+++++|+
T Consensus       312 ~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          312 QPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CGGGGTTBCCSTTEEC----
T ss_pred             Ccccccccchhhhhhccccc
Confidence            77889999999999999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=4.2e-31  Score=256.77  Aligned_cols=288  Identities=20%  Similarity=0.280  Sum_probs=233.3

Q ss_pred             CCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 045304           10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLE   89 (540)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~   89 (540)
                      .+++.++++++.++ .+|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            38999999999998 5676553  78999999999998 56665558999999999999999988899999999999999


Q ss_pred             ccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCc--cCCccccccccccCcEE
Q 045304           90 LGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDG--ILPGTSVGNLSHSLEYF  167 (540)
Q Consensus        90 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~~L~~L  167 (540)
                      +++|.++ .+|..+.  ++|++|++++|.+...     .+..+.++++|+.|++++|.+..  ..+ ..+..+ ++|++|
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l-~~L~~L  176 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKV-----RKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGM-KKLSYI  176 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBB-----CHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGC-TTCCEE
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCccccc-----CHhHhcCCccccEEECCCCcCCccCcCh-hhccCC-CCcCEE
Confidence            9999998 4555543  7999999999999875     44568899999999999999864  444 567777 899999


Q ss_pred             EccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc
Q 045304          168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS  247 (540)
Q Consensus       168 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  247 (540)
                      ++++|.+.. +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus       177 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          177 RIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             ECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence            999999874 565554  89999999999999888899999999999999999999888878999999999999999998


Q ss_pred             cccCccCCCCCCCCEeeCCCCCCCCCCcccc-C------CCCCcEEECCCCcccC--CCccccccccCcceEEcccc
Q 045304          248 RSIPACFSNLASLRTLSLGSNELTSIPLTFW-N------LKDILYLNFSSNFLTG--PLPLEIENLKVLVGIDFSVN  315 (540)
Q Consensus       248 ~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~-~------l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n  315 (540)
                       .+|..+..+++|++|++++|.+++++.... .      .+.++.+++++|.+..  ..|..+..+..++.+++++|
T Consensus       254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence             788889999999999999999999876422 2      2455556666655532  23334444444444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.7e-35  Score=301.87  Aligned_cols=354  Identities=19%  Similarity=0.186  Sum_probs=182.3

Q ss_pred             CCCCEEeccCcccccCCCcc-ccCCCCCCEEEcccCcCccc----cchhhhcCCCCCCEEEccCCcccccCCcccc-CCC
Q 045304           10 RNLELLVLSHNKLVGVIPTK-VFNVSTLKVFEVSNNSLSGS----LSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF-NAS   83 (540)
Q Consensus        10 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~   83 (540)
                      ++|++|+|++|++++..... +..+++|++|++++|.+++.    ++..+ ..+++|++|++++|.+....+..+. .+.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            56778888888776443333 66778888888888877632    33333 5678888888888877654333332 333


Q ss_pred             ----CCCEEEccCCcccc----cCCccccCCCCCCEEECcCccccCCCCCcccccc-CCCCCCCCEEECcCCCCCccCC-
Q 045304           84 ----KLSLLELGDNSFSG----FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSS-LSNCKTLTYIDLSDNPLDGILP-  153 (540)
Q Consensus        84 ----~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~-  153 (540)
                          +|++|++++|.++.    .++..+..+++|++|++++|.+....... +... ....++|++|++++|.+++... 
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH-HHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence                57788887777763    34666777777777777777765421000 1111 2234567777777776654321 


Q ss_pred             --ccccccccccCcEEEccCCcceecCChhcc-----CCCCCCeeeccCCccccc----cCccccCCCCCCeeeeeCccc
Q 045304          154 --GTSVGNLSHSLEYFYMPNCNVSGGIPEEIS-----NLTNLIIIYLGGNKLNGS----IPITLSKLQKLQGLSLADNKL  222 (540)
Q Consensus       154 --~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~  222 (540)
                        ...+..+ ++|++|++++|.+.+..+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.+
T Consensus       161 ~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          161 PLASVLRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHhhC-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence              0122223 4555566655555433332222     234555555555555532    234444555555555555554


Q ss_pred             cCcC-----CccccCCCCCCeEEcCCCCCccc----cCccCCCCCCCCEeeCCCCCCCCC-----Ccccc-CCCCCcEEE
Q 045304          223 EGSI-----PNNICRLTELYELDLGSNKFSRS----IPACFSNLASLRTLSLGSNELTSI-----PLTFW-NLKDILYLN  287 (540)
Q Consensus       223 ~~~~-----p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~i-----p~~~~-~l~~L~~L~  287 (540)
                      .+..     +..+..+++|++|++++|.++..    ++..+..+++|+.|++++|.+++.     ...+. ..++|++|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            4321     11122345555555555555432    334444455555555555554431     11111 123555555


Q ss_pred             CCCCcccCC----CccccccccCcceEEcccceeeecCcccccc-----CCCCcEEeCcCccCcc----cCCcccCCCCC
Q 045304          288 FSSNFLTGP----LPLEIENLKVLVGIDFSVNNFSGVIPTTIGS-----LKGLQYLFVGYNRLQG----SIPYSIGDLIS  354 (540)
Q Consensus       288 L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~l~~  354 (540)
                      +++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence            555555433    2333344455555555555544433322221     3445555555555543    34444444455


Q ss_pred             CCEEECCCCcCc
Q 045304          355 LKSLNLSNNNLS  366 (540)
Q Consensus       355 L~~L~l~~n~l~  366 (540)
                      |++|++++|+++
T Consensus       400 L~~L~l~~N~i~  411 (461)
T 1z7x_W          400 LRELDLSNNCLG  411 (461)
T ss_dssp             CCEEECCSSSCC
T ss_pred             ccEEECCCCCCC
Confidence            555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.2e-35  Score=302.96  Aligned_cols=357  Identities=20%  Similarity=0.193  Sum_probs=269.3

Q ss_pred             CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCcccccCCccc-cCCC-
Q 045304           34 STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCG----TIPHFIFNASKLSLLELGDNSFSGFIPDTF-GNLR-  107 (540)
Q Consensus        34 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~l~-  107 (540)
                      ++|++|++++|.++......++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5688999999988754444445788999999999998874    346667788999999999998876544333 3344 


Q ss_pred             ---CCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccc----ccccCcEEEccCCcceec---
Q 045304          108 ---NLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGN----LSHSLEYFYMPNCNVSGG---  177 (540)
Q Consensus       108 ---~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~----l~~~L~~L~l~~~~~~~~---  177 (540)
                         +|++|++++|.+...... .++..+..+++|++|++++|.+....+ ..+..    ..++|++|++++|.+++.   
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCG-VLSSTLRTLPTLQELHLSDNLLGDAGL-QLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHH-HHHHHTTSCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCceeEEEccCCCCCHHHHH-HHHHHHccCCceeEEECCCCcCchHHH-HHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence               699999999987753211 156778889999999999998865322 22211    114699999999988764   


Q ss_pred             -CChhccCCCCCCeeeccCCccccccCcccc-----CCCCCCeeeeeCccccCc----CCccccCCCCCCeEEcCCCCCc
Q 045304          178 -IPEEISNLTNLIIIYLGGNKLNGSIPITLS-----KLQKLQGLSLADNKLEGS----IPNNICRLTELYELDLGSNKFS  247 (540)
Q Consensus       178 -~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~  247 (540)
                       ++..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence             456677789999999999988755444443     356899999999988863    5667778899999999999887


Q ss_pred             ccc-----CccCCCCCCCCEeeCCCCCCCC-----CCccccCCCCCcEEECCCCcccCCCcccccc-----ccCcceEEc
Q 045304          248 RSI-----PACFSNLASLRTLSLGSNELTS-----IPLTFWNLKDILYLNFSSNFLTGPLPLEIEN-----LKVLVGIDF  312 (540)
Q Consensus       248 ~~~-----~~~~~~l~~L~~L~l~~n~l~~-----ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l  312 (540)
                      +..     +..+..+++|+.|++++|.++.     ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  320 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  320 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence            532     3334467899999999999887     5677777899999999999887554444433     268999999


Q ss_pred             ccceeeec----CccccccCCCCcEEeCcCccCcccCCcccCC-----CCCCCEEECCCCcCcc----ccCccccCCCCC
Q 045304          313 SVNNFSGV----IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD-----LISLKSLNLSNNNLSG----TIPVSLEKLSYL  379 (540)
Q Consensus       313 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~~~~L  379 (540)
                      ++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|
T Consensus       321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            99998865    4566777899999999999988654443332     6789999999999986    677788888999


Q ss_pred             CeEEcccCcceee
Q 045304          380 EDLNLSFNKLAGE  392 (540)
Q Consensus       380 ~~l~l~~n~l~~~  392 (540)
                      +.|++++|++++.
T Consensus       401 ~~L~l~~N~i~~~  413 (461)
T 1z7x_W          401 RELDLSNNCLGDA  413 (461)
T ss_dssp             CEEECCSSSCCHH
T ss_pred             cEEECCCCCCCHH
Confidence            9999999988653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.8e-29  Score=244.20  Aligned_cols=225  Identities=21%  Similarity=0.266  Sum_probs=167.0

Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL  241 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  241 (540)
                      ..++.|++++|.+. .+|+.+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34555555555555 45555666666666666666666 55666666666666666666666 55666666666666666


Q ss_pred             CCCCCccccCccCC---------CCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEc
Q 045304          242 GSNKFSRSIPACFS---------NLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDF  312 (540)
Q Consensus       242 ~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  312 (540)
                      ++|++.+.+|..+.         .+++|++|++++|.++.+|..+..+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence            66666666665544         3788888888888888888778888888888888888874 5556788888888888


Q ss_pred             ccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcce
Q 045304          313 SVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLA  390 (540)
Q Consensus       313 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~  390 (540)
                      ++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..+.+.
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888888888766543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.8e-29  Score=241.26  Aligned_cols=281  Identities=20%  Similarity=0.257  Sum_probs=183.9

Q ss_pred             CCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCccccc--CCccccCCCCCCEEE
Q 045304           12 LELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGT--IPHFIFNASKLSLLE   89 (540)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~   89 (540)
                      -+.++.+++.++ .+|..+.  ++|++|++++|.++ .+|..++..+++|++|++++|.++..  .+..+..+++|++|+
T Consensus         9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            357888888887 5665443  68888999888887 77877777888899999988887732  356667788888888


Q ss_pred             ccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEc
Q 045304           90 LGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM  169 (540)
Q Consensus        90 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l  169 (540)
                      +++|.+.. +|..+..+++|++|++++|.+...+.    ...+..+++|++|++++|.+.+.                  
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~------------------  141 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE----FSVFLSLRNLIYLDISHTHTRVA------------------  141 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT----TTTTTTCTTCCEEECTTSCCEEC------------------
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCccccccc----chhhhhccCCCEEECCCCcCCcc------------------
Confidence            88888874 56667888888888888888776421    12455666666666666655443                  


Q ss_pred             cCCcceecCChhccCCCCCCeeeccCCcccc-ccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcc
Q 045304          170 PNCNVSGGIPEEISNLTNLIIIYLGGNKLNG-SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR  248 (540)
Q Consensus       170 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  248 (540)
                              .+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus       142 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          142 --------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             --------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             --------chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence                    34445555666666666666654 455556666666666666666665556666666666666666666665


Q ss_pred             ccCccCCCCCCCCEeeCCCCCCCC-CCccccCCC-CCcEEECCCCcccCCCc--cccccccCcceEEcccceeeecCccc
Q 045304          249 SIPACFSNLASLRTLSLGSNELTS-IPLTFWNLK-DILYLNFSSNFLTGPLP--LEIENLKVLVGIDFSVNNFSGVIPTT  324 (540)
Q Consensus       249 ~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~-~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~  324 (540)
                      ..+..+..+++|+.|++++|.+++ .|..+..++ +|++|++++|.+.+..+  .....+...+.+.+..+.+....|..
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence            555556666666666666666666 444555553 67777777777765422  11222333444455556666666666


Q ss_pred             ccc
Q 045304          325 IGS  327 (540)
Q Consensus       325 ~~~  327 (540)
                      +..
T Consensus       294 ~~g  296 (306)
T 2z66_A          294 KQG  296 (306)
T ss_dssp             GTT
T ss_pred             hCC
Confidence            544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=5.2e-29  Score=239.35  Aligned_cols=281  Identities=19%  Similarity=0.238  Sum_probs=217.7

Q ss_pred             CEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc--CCccccCCCCCCEEEC
Q 045304           37 KVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF--IPDTFGNLRNLNKVTL  114 (540)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l  114 (540)
                      +.++.+++.++ .+|..+   .++|++|++++|.++...+..+.++++|++|++++|.++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            46777777776 677654   36788888888877744444567777888888887777632  2455566777777777


Q ss_pred             cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCC-hhccCCCCCCeeec
Q 045304          115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP-EEISNLTNLIIIYL  193 (540)
Q Consensus       115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l  193 (540)
                      ++|.+..      ++..+..+++|++|++++|.+                          .+..+ ..+..+++|++|++
T Consensus        86 s~n~i~~------l~~~~~~l~~L~~L~l~~n~l--------------------------~~~~~~~~~~~l~~L~~L~l  133 (306)
T 2z66_A           86 SFNGVIT------MSSNFLGLEQLEHLDFQHSNL--------------------------KQMSEFSVFLSLRNLIYLDI  133 (306)
T ss_dssp             CSCSEEE------EEEEEETCTTCCEEECTTSEE--------------------------ESSTTTTTTTTCTTCCEEEC
T ss_pred             CCCcccc------ChhhcCCCCCCCEEECCCCcc--------------------------cccccchhhhhccCCCEEEC
Confidence            7776654      333455555555555555544                          33322 45778899999999


Q ss_pred             cCCccccccCccccCCCCCCeeeeeCccccC-cCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC
Q 045304          194 GGNKLNGSIPITLSKLQKLQGLSLADNKLEG-SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS  272 (540)
Q Consensus       194 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  272 (540)
                      ++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++
T Consensus       134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence            9999998888899999999999999999987 678899999999999999999999889999999999999999999999


Q ss_pred             CCc-cccCCCCCcEEECCCCcccCCCccccccc-cCcceEEcccceeeecCcc--ccccCCCCcEEeCcCccCcccCCcc
Q 045304          273 IPL-TFWNLKDILYLNFSSNFLTGPLPLEIENL-KVLVGIDFSVNNFSGVIPT--TIGSLKGLQYLFVGYNRLQGSIPYS  348 (540)
Q Consensus       273 ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~  348 (540)
                      ++. .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++..+.  ....+...+.+.+..+.+....|..
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence            765 67889999999999999999999999888 4999999999999876431  1222344556667778888888887


Q ss_pred             cCCCC
Q 045304          349 IGDLI  353 (540)
Q Consensus       349 ~~~l~  353 (540)
                      +.+.+
T Consensus       294 ~~g~~  298 (306)
T 2z66_A          294 KQGMP  298 (306)
T ss_dssp             GTTCB
T ss_pred             hCCce
Confidence            76643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.1e-29  Score=247.15  Aligned_cols=276  Identities=18%  Similarity=0.198  Sum_probs=146.6

Q ss_pred             CCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304            9 LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLL   88 (540)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L   88 (540)
                      |+.....+++++.++ .+|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444555666666666 4454443  36666666666666 4444444566666666666666666556666666666666


Q ss_pred             EccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCC-CCccCCccccccccccCcEE
Q 045304           89 ELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP-LDGILPGTSVGNLSHSLEYF  167 (540)
Q Consensus        89 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~~L~~L  167 (540)
                      ++++|.+++..+..|+++++|++|++++|.+...+.    ...+..+++|++|++++|. +....+ ..+..+ ++|++|
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l-~~L~~L  179 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE----TSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGL-TFLEEL  179 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS----SCSCTTCTTCCEEEEEESSSCCEECT-TTTTTC-CEEEEE
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc----hhhhccCCCCcEEECCCCccccccCH-HHccCC-CCCCEE
Confidence            666666665444446666666666666666664321    0235566666666666663 333322 344444 456666


Q ss_pred             EccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcccc---CCCCCCeEEcCCC
Q 045304          168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC---RLTELYELDLGSN  244 (540)
Q Consensus       168 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~---~l~~L~~L~l~~n  244 (540)
                      ++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+.   ....++.++++.+
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~  259 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV  259 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence            6666666555555566666666666666655432222233455566666665555543332221   2334444444444


Q ss_pred             CCcc----ccCccCCCCCCCCEeeCCCCCCCCCCcc-ccCCCCCcEEECCCCccc
Q 045304          245 KFSR----SIPACFSNLASLRTLSLGSNELTSIPLT-FWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       245 ~l~~----~~~~~~~~l~~L~~L~l~~n~l~~ip~~-~~~l~~L~~L~L~~n~l~  294 (540)
                      .+++    .+|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus       260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            4443    1333444444444444444444444443 234444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=5.4e-29  Score=240.84  Aligned_cols=224  Identities=18%  Similarity=0.236  Sum_probs=162.5

Q ss_pred             CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeee
Q 045304          137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLS  216 (540)
Q Consensus       137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  216 (540)
                      .++.|++++|.+. .+| ..++.+ ++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        82 ~l~~L~L~~n~l~-~lp-~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFP-DQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TCCEEEEESSCCS-SCC-SCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ceeEEEccCCCch-hcC-hhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            3444444444444 223 233333 44555555555554 45555555566666666666655 4555566666666666


Q ss_pred             eeCccccCcCCcccc---------CCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEE
Q 045304          217 LADNKLEGSIPNNIC---------RLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLN  287 (540)
Q Consensus       217 l~~n~~~~~~p~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~  287 (540)
                      +++|.+.+.+|..+.         .+++|++|++++|.++ .+|..+..+++|+.|++++|.++++|..+..+++|++|+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence            666655555555543         4788888888888887 677778888888888888888888888888888888888


Q ss_pred             CCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304          288 FSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       288 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      +++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            8888888888888888888999999988888888888888899999999999888889999999999999888876554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.4e-29  Score=244.86  Aligned_cols=287  Identities=19%  Similarity=0.186  Sum_probs=191.5

Q ss_pred             ccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 045304           30 VFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNL  109 (540)
Q Consensus        30 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  109 (540)
                      -..|+.....+++++.++ .+|..+   .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|
T Consensus        27 ~~~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             CCEECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            345666777888899888 788765   3689999999999987666688899999999999999988888889999999


Q ss_pred             CEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCc-ceecCChhccCCCCC
Q 045304          110 NKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN-VSGGIPEEISNLTNL  188 (540)
Q Consensus       110 ~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~-~~~~~~~~l~~l~~L  188 (540)
                      ++|++++|.++..     .+..+.++++|++|++++|.+.+......+..+ ++|++|++++|+ +.+..+..+..+++|
T Consensus       103 ~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L  176 (353)
T 2z80_A          103 EHLDLSYNYLSNL-----SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFL  176 (353)
T ss_dssp             CEEECCSSCCSSC-----CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CEEECCCCcCCcC-----CHhHhCCCccCCEEECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCC
Confidence            9999999988864     223377888899999988888753221344555 567777777763 554455566666777


Q ss_pred             CeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC
Q 045304          189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN  268 (540)
Q Consensus       189 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  268 (540)
                      ++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..            
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------  244 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------  244 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------
T ss_pred             CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc------------
Confidence            77777777666666666666666667777666665322223334566666666666665543332211            


Q ss_pred             CCCCCCccccCCCCCcEEECCCCcccC----CCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCccc
Q 045304          269 ELTSIPLTFWNLKDILYLNFSSNFLTG----PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS  344 (540)
Q Consensus       269 ~l~~ip~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  344 (540)
                              ......++.++++++.+.+    .+|..+..+++|+.|++++|+++...+..|..+++|++|++++|.+++.
T Consensus       245 --------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          245 --------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             --------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence                    1122344455555554443    2455566677777777777777633333346777777777777777654


Q ss_pred             CC
Q 045304          345 IP  346 (540)
Q Consensus       345 ~~  346 (540)
                      .|
T Consensus       317 ~~  318 (353)
T 2z80_A          317 CP  318 (353)
T ss_dssp             HH
T ss_pred             CC
Confidence            43

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=8.9e-28  Score=243.58  Aligned_cols=231  Identities=26%  Similarity=0.296  Sum_probs=170.2

Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL  241 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  241 (540)
                      +++++|++++|++.+..+..|..+++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            56667777777776666667777777777777777777666677777777777777777777655556777777777777


Q ss_pred             CCCCCccccCccCCCCCCCCEeeCCCC-CCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee
Q 045304          242 GSNKFSRSIPACFSNLASLRTLSLGSN-ELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG  319 (540)
Q Consensus       242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  319 (540)
                      ++|.+....+..|..+++|+.|++++| .+..++. .+..+++|++|+|++|.+.+. | .+..+++|+.|++++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence            777777666666777777777777773 4444554 466777777777777777643 3 46677778888888888887


Q ss_pred             cCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          320 VIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       320 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      ..|..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+...
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            777778888888888888888887777778888888888888888886666677778888888888888766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.3e-31  Score=281.95  Aligned_cols=381  Identities=16%  Similarity=0.143  Sum_probs=187.9

Q ss_pred             cCCCCCCCEEeccCccc---ccCCCcccc------------CCCCCCEEEcccCcCccccchhhhcCCCC-CCEEEccCC
Q 045304            6 IGNLRNLELLVLSHNKL---VGVIPTKVF------------NVSTLKVFEVSNNSLSGSLSSIAGVRLPN-LEVLRMRSN   69 (540)
Q Consensus         6 ~~~l~~L~~L~L~~n~l---~~~~~~~~~------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~L~~n   69 (540)
                      +.++++|++|+|+++..   .+.+|..++            .+++|++|+|++|.+++..+..+...+++ |++|++++|
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence            44566677777766432   133333333            56677777777776665444444222334 677777666


Q ss_pred             c-ccc-cCCccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEEC
Q 045304           70 N-FCG-TIPHFIFNASKLSLLELGDNSFSGF----IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDL  143 (540)
Q Consensus        70 ~-l~~-~~~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l  143 (540)
                      . ++. .++....++++|++|+|++|.+++.    ++..+..+++|++|++++|.+++.... .++..+.++++|+.|++
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~~~~~~~~L~~L~L  227 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK-DLETIARNCRSLVSVKV  227 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH-HHHHHHHHCTTCCEEEC
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH-HHHHHHhhCCCCcEEec
Confidence            4 111 1122233566677777776666543    222344566666676666666532111 13333455666666666


Q ss_pred             cCCCCCccCCccccccccccCcEEEccCCcc--------------------------eecCChhccCCCCCCeeeccCCc
Q 045304          144 SDNPLDGILPGTSVGNLSHSLEYFYMPNCNV--------------------------SGGIPEEISNLTNLIIIYLGGNK  197 (540)
Q Consensus       144 ~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~--------------------------~~~~~~~l~~l~~L~~L~l~~n~  197 (540)
                      ++|.+.+ ++ ..+..+ ++|+.|.++.+..                          .+.+|..+..+++|++|++++|.
T Consensus       228 ~~~~~~~-l~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          228 GDFEILE-LV-GFFKAA-ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             SSCBGGG-GH-HHHHHC-TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             cCccHHH-HH-HHHhhh-hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            6666554 22 333334 4555555543211                          12334444455555555555555


Q ss_pred             cccccC-ccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC-----------CCCccc-cCccCCCCCCCCEee
Q 045304          198 LNGSIP-ITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS-----------NKFSRS-IPACFSNLASLRTLS  264 (540)
Q Consensus       198 l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~  264 (540)
                      +++... ..+..+++|+.|+++++...+.++..+..+++|++|++++           +.+++. ++..+..+++|++|+
T Consensus       305 l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~  384 (592)
T 3ogk_B          305 LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA  384 (592)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred             CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence            433222 2234555555555552222222223334455556666552           333322 111123355566666


Q ss_pred             CCCCCCCC-CCcccc-CCCCCcEEECC----CCcccCC-----CccccccccCcceEEcccce--eeecCccccc-cCCC
Q 045304          265 LGSNELTS-IPLTFW-NLKDILYLNFS----SNFLTGP-----LPLEIENLKVLVGIDFSVNN--FSGVIPTTIG-SLKG  330 (540)
Q Consensus       265 l~~n~l~~-ip~~~~-~l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~  330 (540)
                      ++.|.+++ .+..+. .+++|+.|+++    .|.+++.     ++..+..+++|+.|++++|.  +++..+..+. .+++
T Consensus       385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~  464 (592)
T 3ogk_B          385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN  464 (592)
T ss_dssp             EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred             eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence            65555554 222222 25556666664    4444432     22234455666666665322  4433333332 2556


Q ss_pred             CcEEeCcCccCcc-cCCcccCCCCCCCEEECCCCcCccc-cCccccCCCCCCeEEcccCcce
Q 045304          331 LQYLFVGYNRLQG-SIPYSIGDLISLKSLNLSNNNLSGT-IPVSLEKLSYLEDLNLSFNKLA  390 (540)
Q Consensus       331 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~l~  390 (540)
                      |++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|+++
T Consensus       465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            6666666666654 2333445566666666666665533 2223345566666666666644

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.3e-27  Score=239.65  Aligned_cols=230  Identities=26%  Similarity=0.287  Sum_probs=152.9

Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL  241 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  241 (540)
                      .+++.|++++|++.+..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            45555566555555555556666666666666666666555556666666666666666666544455666666666666


Q ss_pred             CCCCCccccCccCCCCCCCCEeeCCCC-CCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee
Q 045304          242 GSNKFSRSIPACFSNLASLRTLSLGSN-ELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG  319 (540)
Q Consensus       242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  319 (540)
                      ++|.+....+..|..+++|+.|++++| .+..++. .+..+++|++|+|++|.+.. +| .+..+++|+.|+|++|.+++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence            666666555556666666666666663 3334444 45566666677777666663 33 35666777777777777777


Q ss_pred             cCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeC
Q 045304          320 VIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEI  393 (540)
Q Consensus       320 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  393 (540)
                      ..|..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            76777777777777777777777777777777777777777777777666666777777777777777776544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=2.3e-28  Score=232.23  Aligned_cols=223  Identities=23%  Similarity=0.284  Sum_probs=120.3

Q ss_pred             CEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeee
Q 045304          139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLA  218 (540)
Q Consensus       139 ~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  218 (540)
                      +.++.+++.+... | ..   +++++++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus        14 ~~~~c~~~~l~~i-p-~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-P-VG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCSSC-C-TT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcccC-C-cC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            4566666655543 2 11   12456666666666665555556666666666666666665555556666666666666


Q ss_pred             Ccc-ccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCC
Q 045304          219 DNK-LEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGP  296 (540)
Q Consensus       219 ~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~  296 (540)
                      +|. +....|..+..+++|++|++++|.+++..+..|..+++|++|++++|.++.++. .+..+++|++|++++|.+.+.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            664 444445555566666666666666655555555555666666666665555443 244455555555555555544


Q ss_pred             CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304          297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      .+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            4444444455555555555554444444444445555555555544433344444444555555544444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=2.9e-28  Score=231.55  Aligned_cols=254  Identities=20%  Similarity=0.213  Sum_probs=145.3

Q ss_pred             CEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcC
Q 045304           37 KVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN  116 (540)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  116 (540)
                      ++++.+++.++ .+|..+   .++|+.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45555555555 455432   34566666666666555445556666666666666666555555566666666666666


Q ss_pred             cc-ccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccC
Q 045304          117 NY-LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG  195 (540)
Q Consensus       117 n~-~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  195 (540)
                      |. +...     .+..+..+++|++|++++|.+.+.                          .|..+..+++|++|++++
T Consensus        90 n~~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~~~l~~L~~L~l~~  138 (285)
T 1ozn_A           90 NAQLRSV-----DPATFHGLGRLHTLHLDRCGLQEL--------------------------GPGLFRGLAALQYLYLQD  138 (285)
T ss_dssp             CTTCCCC-----CTTTTTTCTTCCEEECTTSCCCCC--------------------------CTTTTTTCTTCCEEECCS
T ss_pred             CCCcccc-----CHHHhcCCcCCCEEECCCCcCCEE--------------------------CHhHhhCCcCCCEEECCC
Confidence            54 4432     123344555555555555544432                          233344455555555555


Q ss_pred             CccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc
Q 045304          196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL  275 (540)
Q Consensus       196 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~  275 (540)
                      |.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.++++|.
T Consensus       139 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             CcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence            55554444455566666666666666664444456666666667776666666666666667777777777777776554


Q ss_pred             -cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccc
Q 045304          276 -TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIG  326 (540)
Q Consensus       276 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  326 (540)
                       .+..+++|++|++++|.+....+.. .....++.+..+.+.+....|..+.
T Consensus       219 ~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          219 EALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             HHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             HHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence             3666777777777777766443321 1112334445566666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3.7e-27  Score=239.01  Aligned_cols=229  Identities=23%  Similarity=0.227  Sum_probs=193.2

Q ss_pred             CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304          136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL  215 (540)
Q Consensus       136 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  215 (540)
                      ++++.|++++|.+.+..+ ..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~-~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQA-DTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECT-TTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECH-HHcCCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence            456666666666666555 555555 667777777777777777788888899999999999887777778889999999


Q ss_pred             eeeCccccCcCCccccCCCCCCeEEcCCC-CCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304          216 SLADNKLEGSIPNNICRLTELYELDLGSN-KFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       216 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~  294 (540)
                      ++++|.+....+..|..+++|++|++++| .+....+..|..+++|+.|++++|.++++| .+..+++|++|+|++|.+.
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCS
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCc
Confidence            99999988766678889999999999985 444444456889999999999999999987 4778899999999999999


Q ss_pred             CCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304          295 GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       295 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                      +..|..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            9889999999999999999999999999999999999999999999998888888999999999999998763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4e-27  Score=237.94  Aligned_cols=229  Identities=23%  Similarity=0.229  Sum_probs=191.4

Q ss_pred             CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304          136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL  215 (540)
Q Consensus       136 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  215 (540)
                      ++++.|+|++|.+.+..+ ..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|+++...+..|..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~-~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKV-NSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECT-TTTSSC-SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCH-HHhhCC-CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            455666666666655544 445555 567777777777766666778888899999999999887666778889999999


Q ss_pred             eeeCccccCcCCccccCCCCCCeEEcCCCC-CccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304          216 SLADNKLEGSIPNNICRLTELYELDLGSNK-FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       216 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~  294 (540)
                      ++++|.+....+..|..+++|++|++++|+ +....+..|..+++|+.|++++|.++.+|. +..+++|++|+|++|.+.
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccC
Confidence            999999887777788899999999999854 444445578899999999999999999884 778899999999999999


Q ss_pred             CCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304          295 GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       295 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                      +..|..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            8889999999999999999999999999999999999999999999998888888999999999999998763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=1.1e-26  Score=241.40  Aligned_cols=265  Identities=24%  Similarity=0.337  Sum_probs=170.9

Q ss_pred             CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304           11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL   90 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L   90 (540)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|+|++|.++ .+|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            5788888888887 6676654  78888888888887 5665    4678888888888877 4554   5678888888


Q ss_pred             cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEcc
Q 045304           91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP  170 (540)
Q Consensus        91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~  170 (540)
                      ++|.+++. |.   .+++|++|++++|.++..+      .   .+++|++|++++|.+.+. | .    ...+|+.|+++
T Consensus       109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp------~---~l~~L~~L~Ls~N~l~~l-~-~----~~~~L~~L~L~  169 (622)
T 3g06_A          109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSLP------V---LPPGLQELSVSDNQLASL-P-A----LPSELCKLWAY  169 (622)
T ss_dssp             CSCCCCCC-CC---CCTTCCEEECCSSCCSCCC------C---CCTTCCEEECCSSCCSCC-C-C----CCTTCCEEECC
T ss_pred             cCCcCCCC-CC---CCCCcCEEECCCCCCCcCC------C---CCCCCCEEECcCCcCCCc-C-C----ccCCCCEEECC
Confidence            88887753 33   5677888888888777642      2   236778888888777653 2 1    12567777777


Q ss_pred             CCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc
Q 045304          171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI  250 (540)
Q Consensus       171 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  250 (540)
                      +|.+++ +|   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++ .+|..   +++|++|++++|.+++ +
T Consensus       170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-l  236 (622)
T 3g06_A          170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-L  236 (622)
T ss_dssp             SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-C
T ss_pred             CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-C
Confidence            776664 44   345667777777776663 332   2356666666666666 34432   3566666666666654 3


Q ss_pred             CccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccc
Q 045304          251 PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIG  326 (540)
Q Consensus       251 ~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  326 (540)
                      |   ..+++|+.|++++|.++.+|.   .+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+++..|..+.
T Consensus       237 p---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          237 P---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             C---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            3   334566666666666666665   3456666666666666 4455566666666666666666655555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=3.4e-29  Score=241.55  Aligned_cols=257  Identities=18%  Similarity=0.174  Sum_probs=146.8

Q ss_pred             CCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECc
Q 045304           36 LKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY  115 (540)
Q Consensus        36 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  115 (540)
                      ++..+++.+.+. ..+..++..+++|+.|++++|.+++..|..+.++++|++|++++|.+++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            344555666654 4444555566677777777777776666667777777777777777765443  6777777777777


Q ss_pred             CccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccC
Q 045304          116 NNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG  195 (540)
Q Consensus       116 ~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  195 (540)
                      +|.+++.      +    ..++|++|++++|.+.+..+ ..   + ++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        89 ~n~l~~l------~----~~~~L~~L~l~~n~l~~~~~-~~---~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  153 (317)
T 3o53_A           89 NNYVQEL------L----VGPSIETLHAANNNISRVSC-SR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL  153 (317)
T ss_dssp             SSEEEEE------E----ECTTCCEEECCSSCCSEEEE-CC---C-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred             CCccccc------c----CCCCcCEEECCCCccCCcCc-cc---c-CCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence            7776642      1    23667777777777665432 11   2 4455555555555554444555556666666666


Q ss_pred             CccccccCccc-cCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC
Q 045304          196 NKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP  274 (540)
Q Consensus       196 n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip  274 (540)
                      |.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++. |..+..+++|+.|++++|.++.+|
T Consensus       154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             CCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchh
Confidence            66655444444 2455566666665555533 1 122355555555555555533 233555555555555555555555


Q ss_pred             ccccCCCCCcEEECCCCccc-CCCccccccccCcceEEcc
Q 045304          275 LTFWNLKDILYLNFSSNFLT-GPLPLEIENLKVLVGIDFS  313 (540)
Q Consensus       275 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~  313 (540)
                      ..+..+++|+.|++++|.+. +.++..+..++.|+.++++
T Consensus       231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            55555555555555555554 3444444444444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.6e-30  Score=273.75  Aligned_cols=382  Identities=13%  Similarity=0.077  Sum_probs=235.3

Q ss_pred             CCCccccCCCCCCEEEcccCcCc---cccchh-----------hhcCCCCCCEEEccCCcccccCCccccCC--CCCCEE
Q 045304           25 VIPTKVFNVSTLKVFEVSNNSLS---GSLSSI-----------AGVRLPNLEVLRMRSNNFCGTIPHFIFNA--SKLSLL   88 (540)
Q Consensus        25 ~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L   88 (540)
                      ..+..+..+++|++|+++++...   +.+|..           +...+++|++|+|++|.+++..+..+...  .+|++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            44456678899999999875421   222222           22378999999999999887766666653  459999


Q ss_pred             EccCCc-ccc-cCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCcc----CCccccccccc
Q 045304           89 ELGDNS-FSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGI----LPGTSVGNLSH  162 (540)
Q Consensus        89 ~L~~n~-~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~  162 (540)
                      ++++|. ++. .++....++++|++|+|++|.+++....+ +...+..+++|+.|++++|.+.+.    ++ ..+..+ +
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~-~  220 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW-LHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNC-R  220 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-HHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHC-T
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH-HHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhC-C
Confidence            999987 221 12233457899999999999887653222 334456789999999999998732    22 223445 7


Q ss_pred             cCcEEEccCCcceecCChhccCCCCCCeeeccCCccc---cccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeE
Q 045304          163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLN---GSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL  239 (540)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  239 (540)
                      +|++|++++|.+.+ +|..+..+++|++|+++.....   +..+..+..+++|+.++++++.. +.+|..+..+++|++|
T Consensus       221 ~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKL  298 (592)
T ss_dssp             TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEE
T ss_pred             CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEE
Confidence            99999999999875 6778888899999988753222   11222334444444444443221 2333344444444444


Q ss_pred             EcCCCCCcc-------------------------ccCccCCCCCCCCEeeCCC-----------CCCCC--CCccccCCC
Q 045304          240 DLGSNKFSR-------------------------SIPACFSNLASLRTLSLGS-----------NELTS--IPLTFWNLK  281 (540)
Q Consensus       240 ~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~l~~-----------n~l~~--ip~~~~~l~  281 (540)
                      ++++|.+++                         .++..+..+++|+.|++++           +.++.  ++.....++
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ  378 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence            444444332                         2222223455666666662           34443  222234466


Q ss_pred             CCcEEECCCCcccCCCcccccc-ccCcceEEcc----cceeeec-----CccccccCCCCcEEeCcCcc--CcccCCccc
Q 045304          282 DILYLNFSSNFLTGPLPLEIEN-LKVLVGIDFS----VNNFSGV-----IPTTIGSLKGLQYLFVGYNR--LQGSIPYSI  349 (540)
Q Consensus       282 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~  349 (540)
                      +|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|+.|++++|.  +++..+..+
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~  458 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI  458 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence            7777777666666555555544 6677777775    4555542     33345567777777776433  554443333


Q ss_pred             C-CCCCCCEEECCCCcCcc-ccCccccCCCCCCeEEcccCcceee-CCCC-CCCCCCCcccccCCC
Q 045304          350 G-DLISLKSLNLSNNNLSG-TIPVSLEKLSYLEDLNLSFNKLAGE-IPRG-GSFGNFSAESFEGNE  411 (540)
Q Consensus       350 ~-~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~l~~~-~p~~-~~~~~~~~~~~~~n~  411 (540)
                      . .+++|++|++++|++++ .++..+..+++|+.|++++|++++. ++.. ..+.++..+.+.+|.
T Consensus       459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            3 36778888888888775 3344556778888888888886543 1211 234556666777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=3.8e-29  Score=240.60  Aligned_cols=247  Identities=17%  Similarity=0.175  Sum_probs=124.0

Q ss_pred             ccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcc-cccCCcccc-------CCCCCCEEEccCCcccccCCc
Q 045304           30 VFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNF-CGTIPHFIF-------NASKLSLLELGDNSFSGFIPD  101 (540)
Q Consensus        30 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~-------~l~~L~~L~L~~n~~~~~~~~  101 (540)
                      ++..++|+.|++++|.+  .+|..+...   |+.|++++|.+ ...+|..+.       ++++|++|++++|.+++.+|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34455666666666666  455554322   66666666666 234444443       566666666666666666665


Q ss_pred             cc--cCCCCCCEEECcCccccCCCCCccccccCCCC-----CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcc
Q 045304          102 TF--GNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNC-----KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV  174 (540)
Q Consensus       102 ~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~  174 (540)
                      .+  ..+++|++|++++|.+++.+      ..+..+     ++|++|++++|.+.+..+ ..++.+ ++|++|++++|++
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~~l-~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATRD------AWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVRVF-PALSTLDLSDNPE  185 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSSS------SHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCCCC-SSCCEEECCSCTT
T ss_pred             HHHHhcCCCccEEEccCCCCcchh------HHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhccC-CCCCEEECCCCCc
Confidence            54  66666666666666666542      122222     667777777776655444 334444 4444444444444


Q ss_pred             eec--CChhc--cCCCCCCeeeccCCcccc--ccC-ccccCCCCCCeeeeeCccccCcCC-ccccCCCCCCeEEcCCCCC
Q 045304          175 SGG--IPEEI--SNLTNLIIIYLGGNKLNG--SIP-ITLSKLQKLQGLSLADNKLEGSIP-NNICRLTELYELDLGSNKF  246 (540)
Q Consensus       175 ~~~--~~~~l--~~l~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l  246 (540)
                      .+.  ++..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.+
T Consensus       186 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence            332  12222  455555555555555542  111 222344455555555555544332 2233344444444444444


Q ss_pred             ccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcc
Q 045304          247 SRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFL  293 (540)
Q Consensus       247 ~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l  293 (540)
                      + .+|..+.  ++|+.|++++|+++++|. +..+++|++|++++|++
T Consensus       266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          266 K-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             S-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred             C-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence            4 3333333  444444444444444433 33444444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=4.8e-29  Score=239.92  Aligned_cols=246  Identities=18%  Similarity=0.203  Sum_probs=175.6

Q ss_pred             CCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcc-eecCChhcc-------CCCCCCeeeccCCccccccCcc
Q 045304          134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV-SGGIPEEIS-------NLTNLIIIYLGGNKLNGSIPIT  205 (540)
Q Consensus       134 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~-~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~  205 (540)
                      ..++|+.+++++|.+  .+| ..+.   ..++.|++++|.+ ...+|..+.       .+++|++|++++|++++.+|..
T Consensus        41 ~~~~L~~l~l~~n~l--~~p-~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADL-GQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCC-HHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             cCCCceeEeeccccc--ccH-HHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            334556666666666  344 2222   2366667777666 345565554       6777888888888887777766


Q ss_pred             c--cCCCCCCeeeeeCccccCcCCccccCC-----CCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC---CCc
Q 045304          206 L--SKLQKLQGLSLADNKLEGSIPNNICRL-----TELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS---IPL  275 (540)
Q Consensus       206 l--~~l~~L~~L~l~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---ip~  275 (540)
                      +  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++++..|..|+.+++|+.|++++|.+.+   +|.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            5  6777888888888887765 6666665     778888888888877777778888888888888887665   233


Q ss_pred             cc--cCCCCCcEEECCCCcccCC--Cc-cccccccCcceEEcccceeeecCc-cccccCCCCcEEeCcCccCcccCCccc
Q 045304          276 TF--WNLKDILYLNFSSNFLTGP--LP-LEIENLKVLVGIDFSVNNFSGVIP-TTIGSLKGLQYLFVGYNRLQGSIPYSI  349 (540)
Q Consensus       276 ~~--~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~  349 (540)
                      .+  ..+++|++|++++|.+.+.  ++ ..+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            33  6778888888888887731  22 334566788888888888887664 44556788888888888888 667666


Q ss_pred             CCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee
Q 045304          350 GDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~  391 (540)
                      .  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            5  7888888888888865 55 7788888888888888764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=8.6e-29  Score=238.70  Aligned_cols=257  Identities=20%  Similarity=0.212  Sum_probs=144.8

Q ss_pred             CCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCE
Q 045304           61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY  140 (540)
Q Consensus        61 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~  140 (540)
                      ++.++++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++.      + .+..+++|++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~-~~~~l~~L~~   84 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET------L-DLESLSTLRT   84 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE------E-EETTCTTCCE
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc------h-hhhhcCCCCE
Confidence            45556666666644445555667888888888888877777888888888888888887753      2 2777788888


Q ss_pred             EECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCc
Q 045304          141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADN  220 (540)
Q Consensus       141 L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  220 (540)
                      |++++|.+.+..      .. ++|++|++++|.+.+..+.   .+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        85 L~Ls~n~l~~l~------~~-~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           85 LDLNNNYVQELL------VG-PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             EECCSSEEEEEE------EC-TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred             EECcCCcccccc------CC-CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence            888888765432      11 4566666666666544332   2445566666666665554555555555555555555


Q ss_pred             cccCcCCccc-cCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCcc
Q 045304          221 KLEGSIPNNI-CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL  299 (540)
Q Consensus       221 ~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~  299 (540)
                      .+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|.++++|..+..+++|++|++++|.+. .+|.
T Consensus       155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~  231 (317)
T 3o53_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK  231 (317)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred             CCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhh
Confidence            5554444433 2455555555555555433 11 22245555555555555554444444444555544444444 2333


Q ss_pred             ccccccCcceEEcccceee-ecCccccccCCCCcEEeCc
Q 045304          300 EIENLKVLVGIDFSVNNFS-GVIPTTIGSLKGLQYLFVG  337 (540)
Q Consensus       300 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~  337 (540)
                      .+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            3444444444444444444 3333333444444444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=5.2e-26  Score=236.37  Aligned_cols=267  Identities=26%  Similarity=0.304  Sum_probs=147.0

Q ss_pred             CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 045304           34 STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVT  113 (540)
Q Consensus        34 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  113 (540)
                      .++++|++++|.++ .+|..++   ++|+.|++++|.++ .+|.   .+++|++|+|++|.+++ +|.   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence            35777777777776 6666552   67777777777766 3444   45667777777777663 333   556667777


Q ss_pred             CcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeec
Q 045304          114 LYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYL  193 (540)
Q Consensus       114 l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  193 (540)
                      +++|.+++.      +.   .+++|+.|++++|.+.+.                           |..   +++|++|++
T Consensus       108 Ls~N~l~~l------~~---~l~~L~~L~L~~N~l~~l---------------------------p~~---l~~L~~L~L  148 (622)
T 3g06_A          108 IFSNPLTHL------PA---LPSGLCKLWIFGNQLTSL---------------------------PVL---PPGLQELSV  148 (622)
T ss_dssp             ECSCCCCCC------CC---CCTTCCEEECCSSCCSCC---------------------------CCC---CTTCCEEEC
T ss_pred             CcCCcCCCC------CC---CCCCcCEEECCCCCCCcC---------------------------CCC---CCCCCEEEC
Confidence            766666653      11   345566666666655542                           221   244444444


Q ss_pred             cCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC
Q 045304          194 GGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI  273 (540)
Q Consensus       194 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i  273 (540)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++.+
T Consensus       149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l  216 (622)
T 3g06_A          149 SDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL  216 (622)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC
T ss_pred             cCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc
Confidence            4444442 221   22345555555555543 33   233455555555555543 2221   24555555555555555


Q ss_pred             CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCC
Q 045304          274 PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLI  353 (540)
Q Consensus       274 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  353 (540)
                      |..   +++|++|++++|.+++ +|   ..+++|+.|++++|.++. +|.   .+++|+.|+|++|.++ .+|..+..++
T Consensus       217 ~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~  284 (622)
T 3g06_A          217 PAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS  284 (622)
T ss_dssp             CCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred             CCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence            532   2455555555555553 33   233556666666666552 333   3456666666666666 5566666666


Q ss_pred             CCCEEECCCCcCccccCccccC
Q 045304          354 SLKSLNLSNNNLSGTIPVSLEK  375 (540)
Q Consensus       354 ~L~~L~l~~n~l~~~~~~~~~~  375 (540)
                      +|+.|++++|++++..|..+..
T Consensus       285 ~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          285 SETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             TTCEEECCSCCCCHHHHHHHHH
T ss_pred             ccCEEEecCCCCCCcCHHHHHh
Confidence            6666666666666665555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=9.1e-27  Score=237.37  Aligned_cols=234  Identities=19%  Similarity=0.183  Sum_probs=143.4

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC
Q 045304           59 PNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL  138 (540)
Q Consensus        59 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L  138 (540)
                      ++|+.|+|++|.+++..|..+..+++|++|+|++|.+++..|  +..+++|++|++++|.+++.      +    ..++|
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------~----~~~~L  101 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------L----VGPSI  101 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE------E----ECTTC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC------C----CCCCc
Confidence            367777777777776666667777777777777777765544  66777777777777766643      1    12567


Q ss_pred             CEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCcccc-CCCCCCeeee
Q 045304          139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLS-KLQKLQGLSL  217 (540)
Q Consensus       139 ~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l  217 (540)
                      ++|++++|.+.+..+ .   .+ ++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++
T Consensus       102 ~~L~L~~N~l~~~~~-~---~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          102 ETLHAANNNISRVSC-S---RG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             CEEECCSSCCCCEEE-C---CC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CEEECcCCcCCCCCc-c---cc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            777777777665433 1   12 4566666666666665565666666666666666666665555554 5666666666


Q ss_pred             eCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc-CC
Q 045304          218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT-GP  296 (540)
Q Consensus       218 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~-~~  296 (540)
                      ++|.+++..  .+..+++|++|+|++|.+++..| .|..+++|+.|++++|.++++|..+..+++|+.|++++|.+. +.
T Consensus       177 s~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          177 QYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            666666442  23346666666666666664333 356666666666666666666665556666666666666555 44


Q ss_pred             CccccccccCcceEEc
Q 045304          297 LPLEIENLKVLVGIDF  312 (540)
Q Consensus       297 ~~~~~~~l~~L~~L~l  312 (540)
                      +|..+..++.|+.+++
T Consensus       254 ~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          254 LRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             hHHHHHhCCCCcEEec
Confidence            4444444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=3.7e-27  Score=240.28  Aligned_cols=235  Identities=22%  Similarity=0.205  Sum_probs=138.7

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304           82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS  161 (540)
Q Consensus        82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  161 (540)
                      +++|++|+|++|.+++..|..|+.+++|++|+|++|.+++.     .+  +..+++|++|++++|.+.+..+      . 
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~--l~~l~~L~~L~Ls~N~l~~l~~------~-   98 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----LD--LESLSTLRTLDLNNNYVQELLV------G-   98 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-----EE--CTTCTTCCEEECCSSEEEEEEE------C-
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-----cc--cccCCCCCEEEecCCcCCCCCC------C-
Confidence            34788999999888887778888888888888888888763     22  7778888888888887764322      1 


Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcccc-CCCCCCeEE
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELD  240 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~  240 (540)
                      ++|++|++++|.+.+..+.   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|+
T Consensus        99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            4666666666666554332   235566666666666655555555566666666666666555555443 455666666


Q ss_pred             cCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee-e
Q 045304          241 LGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS-G  319 (540)
Q Consensus       241 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~  319 (540)
                      |++|.+++..+  +..+++|+.|++++|.++++|..+..+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. +
T Consensus       176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             cCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence            66665554422  223555555555555555554445555555555555555543 3334444444444444444444 3


Q ss_pred             cCccccccCCCCcEEeC
Q 045304          320 VIPTTIGSLKGLQYLFV  336 (540)
Q Consensus       320 ~~~~~~~~l~~L~~L~l  336 (540)
                      .+|..+..++.|+.+++
T Consensus       253 ~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          253 TLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHhCCCCcEEec
Confidence            33333444433333333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=2.1e-25  Score=210.71  Aligned_cols=209  Identities=24%  Similarity=0.238  Sum_probs=145.4

Q ss_pred             CCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeC
Q 045304          186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSL  265 (540)
Q Consensus       186 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  265 (540)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666666666666555555666666666666666666555556666667777777777666666666666777777777


Q ss_pred             CCCCCCCCCc-cccCCCCCcEEECCCCcccCC-CccccccccCcceEEcccceeeecCccccccCCCCc----EEeCcCc
Q 045304          266 GSNELTSIPL-TFWNLKDILYLNFSSNFLTGP-LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQ----YLFVGYN  339 (540)
Q Consensus       266 ~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~n  339 (540)
                      ++|.++.++. .+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.+++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            7777766544 566667777777777777653 467777777777777777777776666666665565    7888888


Q ss_pred             cCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCC
Q 045304          340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPR  395 (540)
Q Consensus       340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~  395 (540)
                      .+++..+..+. ..+|+.|++++|++++..+..+..+++|+.+++++|++.+..|.
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            88865554443 34788888888888866666678888888888888888877663

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=3.1e-28  Score=256.37  Aligned_cols=378  Identities=15%  Similarity=0.146  Sum_probs=204.0

Q ss_pred             cCCCCCCCEEeccCccccc---CCCc------------cccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCC-
Q 045304            6 IGNLRNLELLVLSHNKLVG---VIPT------------KVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSN-   69 (540)
Q Consensus         6 ~~~l~~L~~L~L~~n~l~~---~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n-   69 (540)
                      +.++++|+.|+++++....   ..|.            ....+++|++|++++|.+++..+..+...+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            4567889999999875321   1221            12467899999999998887666666446899999999988 


Q ss_pred             ccccc-CCccccCCCCCCEEEccCCcccccCCccc----cCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECc
Q 045304           70 NFCGT-IPHFIFNASKLSLLELGDNSFSGFIPDTF----GNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLS  144 (540)
Q Consensus        70 ~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~  144 (540)
                      .++.. ++..+.++++|++|++++|.+++..+..+    ..+++|++|++++|. ..... ..+...+..+++|++|+++
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~-~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSF-SALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCH-HHHHHHHHHCTTCCEEECC
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCH-HHHHHHHHhCCCCcEEecC
Confidence            44432 44445578999999999998776544333    367799999999886 11110 0122223457899999999


Q ss_pred             CCCCCccCCccccccccccCcEEEccCCc-------cee-----------------------cCChhccCCCCCCeeecc
Q 045304          145 DNPLDGILPGTSVGNLSHSLEYFYMPNCN-------VSG-----------------------GIPEEISNLTNLIIIYLG  194 (540)
Q Consensus       145 ~n~l~~~~~~~~~~~l~~~L~~L~l~~~~-------~~~-----------------------~~~~~l~~l~~L~~L~l~  194 (540)
                      +|...+.++ ..+..+ ++|+.|.+..+.       +.+                       .++..+..+++|++|+++
T Consensus       220 ~~~~~~~l~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~  297 (594)
T 2p1m_B          220 RAVPLEKLA-TLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS  297 (594)
T ss_dssp             TTSCHHHHH-HHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECT
T ss_pred             CCCcHHHHH-HHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEcc
Confidence            884333233 344445 678888755442       111                       122222234555555555


Q ss_pred             CCccccccC-ccccCCCCCCeeeeeCccccC-cCCccccCCCCCCeEEcCC---------CCCccccCccC-CCCCCCCE
Q 045304          195 GNKLNGSIP-ITLSKLQKLQGLSLADNKLEG-SIPNNICRLTELYELDLGS---------NKFSRSIPACF-SNLASLRT  262 (540)
Q Consensus       195 ~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~  262 (540)
                      +|.+++... ..+..+++|++|++++| +.. .++.....+++|++|+++.         +.+++.....+ ..+++|+.
T Consensus       298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~  376 (594)
T 2p1m_B          298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES  376 (594)
T ss_dssp             TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence            555443211 12334555555555555 221 1111222355555555522         23322211111 12455555


Q ss_pred             eeCCCCCCCC-CCccc-cCCCCCcEEECC--C----CcccCC-----CccccccccCcceEEcccceeeecCcccccc-C
Q 045304          263 LSLGSNELTS-IPLTF-WNLKDILYLNFS--S----NFLTGP-----LPLEIENLKVLVGIDFSVNNFSGVIPTTIGS-L  328 (540)
Q Consensus       263 L~l~~n~l~~-ip~~~-~~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l  328 (540)
                      |.+..|.+++ .+..+ ..+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++..+..+.. +
T Consensus       377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~  455 (594)
T 2p1m_B          377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA  455 (594)
T ss_dssp             EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred             HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence            5555555554 11122 235556666665  2    233311     111234455666666654 444333333333 5


Q ss_pred             CCCcEEeCcCccCcccCCccc-CCCCCCCEEECCCCcCccccCc-cccCCCCCCeEEcccCcc
Q 045304          329 KGLQYLFVGYNRLQGSIPYSI-GDLISLKSLNLSNNNLSGTIPV-SLEKLSYLEDLNLSFNKL  389 (540)
Q Consensus       329 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~l~l~~n~l  389 (540)
                      ++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|++
T Consensus       456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            566666666666554333333 4455666666666665433222 223355666666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.2e-24  Score=205.48  Aligned_cols=207  Identities=18%  Similarity=0.180  Sum_probs=179.6

Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL  241 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  241 (540)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            56888888888887777778888899999999999988777778888999999999999998877788999999999999


Q ss_pred             CCCCCccccCccCCCCCCCCEeeCCCCCCCC--CCccccCCCCCcEEECCCCcccCCCccccccccCcc----eEEcccc
Q 045304          242 GSNKFSRSIPACFSNLASLRTLSLGSNELTS--IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV----GIDFSVN  315 (540)
Q Consensus       242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l~~n  315 (540)
                      ++|.+.+..+..+..+++|++|++++|.+++  +|..+..+++|++|++++|++.+..+..+..+.+|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            9999988777788999999999999999987  688899999999999999999988778888777777    8999999


Q ss_pred             eeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcccc
Q 045304          316 NFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTI  369 (540)
Q Consensus       316 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  369 (540)
                      .+++..+..+.. .+|+.|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            999776665554 48999999999999777777899999999999999998543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=4e-24  Score=201.09  Aligned_cols=205  Identities=26%  Similarity=0.303  Sum_probs=138.7

Q ss_pred             CCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCC
Q 045304          187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLG  266 (540)
Q Consensus       187 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  266 (540)
                      +.+.++++++.++ .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            3455666666655 3443332  456666666666665555566666666666666666665555555666677777777


Q ss_pred             CCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccC
Q 045304          267 SNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI  345 (540)
Q Consensus       267 ~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  345 (540)
                      +|.++.+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            777666554 3456667777777777777666666677777777777777777665666777778888888888877666


Q ss_pred             CcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          346 PYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      +..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            6667777888888888888876666667777888888888777765443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1.9e-24  Score=204.92  Aligned_cols=205  Identities=23%  Similarity=0.215  Sum_probs=159.9

Q ss_pred             ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304          182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR  261 (540)
Q Consensus       182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  261 (540)
                      +.+++++++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            456677778888877777 4554443  5778888888888777677788888888888888888754332  6778888


Q ss_pred             EeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304          262 TLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL  341 (540)
Q Consensus       262 ~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  341 (540)
                      +|++++|.++.+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            88888888888888778888888888888888877777788888888888888888877777778888888888888888


Q ss_pred             cccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceee
Q 045304          342 QGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGE  392 (540)
Q Consensus       342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  392 (540)
                      ++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|++.+.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            8666666778888888888888888 6677777777888888888877654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.5e-27  Score=251.21  Aligned_cols=372  Identities=15%  Similarity=0.095  Sum_probs=258.4

Q ss_pred             CCCCCCCEEeccCcccccCCCcccc-CCCCCCEEEcccC-cCccccchhhhcCCCCCCEEEccCCcccccCCccc----c
Q 045304            7 GNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNN-SLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFI----F   80 (540)
Q Consensus         7 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~   80 (540)
                      ..+++|++|+|++|.+++..+..+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+..+    .
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            4678999999999998877776675 6899999999998 45433233343679999999999999876544444    3


Q ss_pred             CCCCCCEEEccCCc--cccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCC----------
Q 045304           81 NASKLSLLELGDNS--FSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP----------  147 (540)
Q Consensus        81 ~l~~L~~L~L~~n~--~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~----------  147 (540)
                      .+++|++|++++|.  ++.. ++..+.++++|++|++++|.....     ++..+..+++|+.|+++.+.          
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  256 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-----LATLLQRAPQLEELGTGGYTAEVRPDVYSG  256 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-----HHHHHHHCTTCSEEECSBCCCCCCHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-----HHHHHhcCCcceEcccccccCccchhhHHH
Confidence            67799999999986  2211 222234579999999998822111     33445556666666654432          


Q ss_pred             ----------------CC----ccCCccccccccccCcEEEccCCcceecCC-hhccCCCCCCeeeccCCcccc-ccCcc
Q 045304          148 ----------------LD----GILPGTSVGNLSHSLEYFYMPNCNVSGGIP-EEISNLTNLIIIYLGGNKLNG-SIPIT  205 (540)
Q Consensus       148 ----------------l~----~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~-~~~~~  205 (540)
                                      +.    ..++ .....+ ++|++|++++|.+.+... ..+..+++|++|++++| +.. .++..
T Consensus       257 l~~~l~~~~~L~~Ls~~~~~~~~~l~-~~~~~~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l  333 (594)
T 2p1m_B          257 LSVALSGCKELRCLSGFWDAVPAYLP-AVYSVC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL  333 (594)
T ss_dssp             HHHHHHTCTTCCEEECCBTCCGGGGG-GGHHHH-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred             HHHHHhcCCCcccccCCcccchhhHH-HHHHhh-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence                            11    1111 112234 789999999999765433 33668999999999988 432 23333


Q ss_pred             ccCCCCCCeeeeeC---------ccccCcCCcccc-CCCCCCeEEcCCCCCccccCccCC-CCCCCCEeeCC--C----C
Q 045304          206 LSKLQKLQGLSLAD---------NKLEGSIPNNIC-RLTELYELDLGSNKFSRSIPACFS-NLASLRTLSLG--S----N  268 (540)
Q Consensus       206 l~~l~~L~~L~l~~---------n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n  268 (540)
                      ...+++|++|++.+         +.+++.....+. .+++|++|+++.|.+++.....+. .+++|+.|+++  +    +
T Consensus       334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  413 (594)
T 2p1m_B          334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD  413 (594)
T ss_dssp             HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred             HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence            34689999999944         344432222233 478999999999998876555554 58999999999  4    5


Q ss_pred             CCCCCCc------cccCCCCCcEEECCCCcccCCCcccccc-ccCcceEEcccceeeecCcccc-ccCCCCcEEeCcCcc
Q 045304          269 ELTSIPL------TFWNLKDILYLNFSSNFLTGPLPLEIEN-LKVLVGIDFSVNNFSGVIPTTI-GSLKGLQYLFVGYNR  340 (540)
Q Consensus       269 ~l~~ip~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~  340 (540)
                      .++..|.      .+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.
T Consensus       414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~  492 (594)
T 2p1m_B          414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP  492 (594)
T ss_dssp             TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred             cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence            6765432      356789999999987 666555555554 8899999999999977655555 678999999999999


Q ss_pred             CcccCCc-ccCCCCCCCEEECCCCcCccccCccc-cCCCCCCeEEcccC
Q 045304          341 LQGSIPY-SIGDLISLKSLNLSNNNLSGTIPVSL-EKLSYLEDLNLSFN  387 (540)
Q Consensus       341 l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~l~l~~n  387 (540)
                      +++.... ....+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus       493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          493 FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            9755443 44568999999999999864433334 45666655444433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=6.8e-24  Score=201.17  Aligned_cols=206  Identities=27%  Similarity=0.300  Sum_probs=183.5

Q ss_pred             cccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCc
Q 045304          205 TLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDIL  284 (540)
Q Consensus       205 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~  284 (540)
                      .+..++++++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|.++.++.. ..+++|+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG   80 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence            3678899999999999998 5666554  6899999999999998899999999999999999999997765 7889999


Q ss_pred             EEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCc
Q 045304          285 YLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNN  364 (540)
Q Consensus       285 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  364 (540)
                      +|++++|.+. .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            9999999998 678888999999999999999998888899999999999999999998878888999999999999999


Q ss_pred             CccccCccccCCCCCCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCC
Q 045304          365 LSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGS  416 (540)
Q Consensus       365 l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~  416 (540)
                      +++..+..+..+++|+.|++++|+++ .+|.. .....+....+.+||+.|+|
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            99777777889999999999999998 45543 34456778889999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.6e-23  Score=194.58  Aligned_cols=202  Identities=26%  Similarity=0.271  Sum_probs=133.3

Q ss_pred             CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304          164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS  243 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  243 (540)
                      .+.++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            444555444444 2333322  4566666666666655445566666666666666666644444456666666666666


Q ss_pred             CCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCc
Q 045304          244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP  322 (540)
Q Consensus       244 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  322 (540)
                      |.+++..+..|..+++|++|++++|.++.++. .+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            66665555566666667777777776666543 45566777777777777766555566777777777777777776666


Q ss_pred             cccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304          323 TTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT  368 (540)
Q Consensus       323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  368 (540)
                      ..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            6677788888888888888866666677888888888888887644

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.6e-23  Score=197.14  Aligned_cols=186  Identities=28%  Similarity=0.330  Sum_probs=94.7

Q ss_pred             ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304          182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR  261 (540)
Q Consensus       182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  261 (540)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            33444444444444444431  1344444444444444444444444444445555555555555444444444455555


Q ss_pred             EeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304          262 TLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR  340 (540)
Q Consensus       262 ~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  340 (540)
                      +|++++|.++++|. .+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            55555555554333 23445555555555555554444445555555555555555555555555556666666666665


Q ss_pred             CcccCCcccCCCCCCCEEECCCCcCccccCccccCC
Q 045304          341 LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL  376 (540)
Q Consensus       341 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  376 (540)
                      +.+.       +++|+.++++.|.++|.+|..+..+
T Consensus       217 ~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          217 WDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             BCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             cccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            5432       3345666666666666666655543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.4e-23  Score=197.52  Aligned_cols=141  Identities=30%  Similarity=0.317  Sum_probs=64.9

Q ss_pred             ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304          182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR  261 (540)
Q Consensus       182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  261 (540)
                      +..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            34444444444444444443333444444444444444444433333344444444444444444444443444444444


Q ss_pred             EeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304          262 TLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL  341 (540)
Q Consensus       262 ~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  341 (540)
                      .|++++|.+++                       ..+..+..+++|+.|++++|.+.+.       +++|+.++++.|.+
T Consensus       185 ~L~L~~N~l~~-----------------------~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          185 DLRLYQNQLKS-----------------------VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH  234 (272)
T ss_dssp             EEECCSSCCSC-----------------------CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred             EEECCCCcCCc-----------------------cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence            44444444444                       3333344444444444444444322       33455555555555


Q ss_pred             cccCCcccCCC
Q 045304          342 QGSIPYSIGDL  352 (540)
Q Consensus       342 ~~~~~~~~~~l  352 (540)
                      +|.+|.+++.+
T Consensus       235 ~g~ip~~~~~~  245 (272)
T 3rfs_A          235 SGVVRNSAGSV  245 (272)
T ss_dssp             GGGBBCTTSCB
T ss_pred             CCcccCccccc
Confidence            55555544443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=201.87  Aligned_cols=199  Identities=17%  Similarity=0.164  Sum_probs=113.0

Q ss_pred             CCCCeeeccCCccccccCccc--cCCCCCCeeeeeCccccCcCC----ccccCCCCCCeEEcCCCCCccccCccCCCCCC
Q 045304          186 TNLIIIYLGGNKLNGSIPITL--SKLQKLQGLSLADNKLEGSIP----NNICRLTELYELDLGSNKFSRSIPACFSNLAS  259 (540)
Q Consensus       186 ~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  259 (540)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..|+.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            335555555555554444444  445555555555555544333    22234555555555555555555555555555


Q ss_pred             CCEeeCCCCCCCC---CCc--cccCCCCCcEEECCCCcccCCCcc----ccccccCcceEEcccceeeecCccccccC--
Q 045304          260 LRTLSLGSNELTS---IPL--TFWNLKDILYLNFSSNFLTGPLPL----EIENLKVLVGIDFSVNNFSGVIPTTIGSL--  328 (540)
Q Consensus       260 L~~L~l~~n~l~~---ip~--~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--  328 (540)
                      |++|++++|.+.+   ++.  .+..+++|++|+|++|+++. ++.    .+..+++|++|++++|.+++..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            5555555555443   221  22445556666666665541 121    23455666667777777666656555554  


Q ss_pred             -CCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcce
Q 045304          329 -KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLA  390 (540)
Q Consensus       329 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~  390 (540)
                       ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|+++
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence             57777777777777 5565553  6777777777777753 32 566777778888777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=4e-23  Score=190.61  Aligned_cols=196  Identities=15%  Similarity=0.195  Sum_probs=125.0

Q ss_pred             CCCeeeccCCccccccCccccCCCCCCeeeeeCcc-ccCcCCccccCCCCCCeEEcCC-CCCccccCccCCCCCCCCEee
Q 045304          187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNK-LEGSIPNNICRLTELYELDLGS-NKFSRSIPACFSNLASLRTLS  264 (540)
Q Consensus       187 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~  264 (540)
                      +|++|++++|++++..+..|..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666665555556666666666666664 5544444566666666666665 666655555666666666666


Q ss_pred             CCCCCCCCCCccccCCCCCc---EEECCCC-cccCCCccccccccCcc-eEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304          265 LGSNELTSIPLTFWNLKDIL---YLNFSSN-FLTGPLPLEIENLKVLV-GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN  339 (540)
Q Consensus       265 l~~n~l~~ip~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  339 (540)
                      +++|.++++|. +..+++|+   +|++++| .+.+..+..+..+++|+ .|++++|.++...+..+.. ++|+.|++++|
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence            66666666665 55555665   6677766 66655555666777777 7777777776333333443 67777777777


Q ss_pred             c-CcccCCcccCCC-CCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304          340 R-LQGSIPYSIGDL-ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN  387 (540)
Q Consensus       340 ~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  387 (540)
                      + +++..+..+..+ ++|+.|++++|++++ +|..  .+++|+.|+++++
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            4 776556667777 777788887777774 3332  5667777777665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=4.2e-25  Score=219.24  Aligned_cols=247  Identities=18%  Similarity=0.233  Sum_probs=151.6

Q ss_pred             CCccccCCCCCCEEEcccCcCccccchh---hhcCCCCCCEEEccCC---cccccCCccc-------cCCCCCCEEEccC
Q 045304           26 IPTKVFNVSTLKVFEVSNNSLSGSLSSI---AGVRLPNLEVLRMRSN---NFCGTIPHFI-------FNASKLSLLELGD   92 (540)
Q Consensus        26 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~L~~n---~l~~~~~~~l-------~~l~~L~~L~L~~   92 (540)
                      ++..+..+++|++|+|++|.+.+..+..   .+..+++|++|+|++|   .+++.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            4445555666666666666655332222   1235566666666654   2333334333       4556666666666


Q ss_pred             Ccccc----cCCccccCCCCCCEEECcCccccCCCCCccccccCCCC---------CCCCEEECcCCCCCc-cCCc--cc
Q 045304           93 NSFSG----FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNC---------KTLTYIDLSDNPLDG-ILPG--TS  156 (540)
Q Consensus        93 n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l---------~~L~~L~l~~n~l~~-~~~~--~~  156 (540)
                      |.+++    .++..+..+++|++|+|++|.+...... .++..+..+         ++|++|++++|.+.. .++.  ..
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            66654    3445556666666666666655432100 022222223         666677777666652 1110  12


Q ss_pred             cccccccCcEEEccCCccee-----cCChhccCCCCCCeeeccCCccc----cccCccccCCCCCCeeeeeCccccCc--
Q 045304          157 VGNLSHSLEYFYMPNCNVSG-----GIPEEISNLTNLIIIYLGGNKLN----GSIPITLSKLQKLQGLSLADNKLEGS--  225 (540)
Q Consensus       157 ~~~l~~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~~~~~--  225 (540)
                      +..+ ++|++|++++|.+..     ..+..+..+++|++|++++|.++    +.+|..+..+++|++|++++|.+++.  
T Consensus       183 l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          183 FQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            3334 467777777776652     23336778888888888888885    56677788888888888888888755  


Q ss_pred             --CCcccc--CCCCCCeEEcCCCCCcc----ccCccC-CCCCCCCEeeCCCCCCCCCC
Q 045304          226 --IPNNIC--RLTELYELDLGSNKFSR----SIPACF-SNLASLRTLSLGSNELTSIP  274 (540)
Q Consensus       226 --~p~~~~--~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~ip  274 (540)
                        ++..+.  .+++|++|+|++|.+++    .+|..+ .++++|++|++++|.+++..
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              455553  38889999999998887    466666 56788999999999888744

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=3.9e-23  Score=198.47  Aligned_cols=225  Identities=16%  Similarity=0.156  Sum_probs=179.2

Q ss_pred             CCCEEECcCCCCCccCCc--cccccccccCcEEEccCCcceecCChhc--cCCCCCCeeeccCCccccccC----ccccC
Q 045304          137 TLTYIDLSDNPLDGILPG--TSVGNLSHSLEYFYMPNCNVSGGIPEEI--SNLTNLIIIYLGGNKLNGSIP----ITLSK  208 (540)
Q Consensus       137 ~L~~L~l~~n~l~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~~  208 (540)
                      .++.+.+.++.+....-.  .....+ ++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            456666666655421000  011112 458888888888888888877  889999999999999987555    34457


Q ss_pred             CCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccc--c--CccCCCCCCCCEeeCCCCCCCCCCcc----ccCC
Q 045304          209 LQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRS--I--PACFSNLASLRTLSLGSNELTSIPLT----FWNL  280 (540)
Q Consensus       209 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~ip~~----~~~l  280 (540)
                      +++|++|++++|.+.+..|..|..+++|++|++++|++.+.  +  +..+..+++|++|++++|.++.++..    +..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            89999999999999988888999999999999999998652  2  23347889999999999999876652    4678


Q ss_pred             CCCcEEECCCCcccCCCccccccc---cCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCE
Q 045304          281 KDILYLNFSSNFLTGPLPLEIENL---KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS  357 (540)
Q Consensus       281 ~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  357 (540)
                      ++|++|+|++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            999999999999998888777776   69999999999999 6677664  7999999999999964 43 678899999


Q ss_pred             EECCCCcCcc
Q 045304          358 LNLSNNNLSG  367 (540)
Q Consensus       358 L~l~~n~l~~  367 (540)
                      |++++|+++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=4e-25  Score=219.41  Aligned_cols=187  Identities=21%  Similarity=0.238  Sum_probs=92.5

Q ss_pred             cCCCCCCeeeccCCcccc----ccCccccCCCCCCeeeeeCccccCcCCcccc----CC---------CCCCeEEcCCCC
Q 045304          183 SNLTNLIIIYLGGNKLNG----SIPITLSKLQKLQGLSLADNKLEGSIPNNIC----RL---------TELYELDLGSNK  245 (540)
Q Consensus       183 ~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~----~l---------~~L~~L~l~~n~  245 (540)
                      ..+++|++|++++|.+..    .++..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            444555555555555543    2334444455555555555544322222221    22         566666666666


Q ss_pred             Cc-cccC---ccCCCCCCCCEeeCCCCCCCC------CCccccCCCCCcEEECCCCccc----CCCccccccccCcceEE
Q 045304          246 FS-RSIP---ACFSNLASLRTLSLGSNELTS------IPLTFWNLKDILYLNFSSNFLT----GPLPLEIENLKVLVGID  311 (540)
Q Consensus       246 l~-~~~~---~~~~~l~~L~~L~l~~n~l~~------ip~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~  311 (540)
                      ++ +.++   ..+..+++|+.|++++|.++.      +|..+..+++|++|+|++|.++    +.+|..+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            55 2233   234455566666666665551      2224445555555555555553    33444555555555555


Q ss_pred             cccceeeec----Cccccc--cCCCCcEEeCcCccCcc----cCCccc-CCCCCCCEEECCCCcCcccc
Q 045304          312 FSVNNFSGV----IPTTIG--SLKGLQYLFVGYNRLQG----SIPYSI-GDLISLKSLNLSNNNLSGTI  369 (540)
Q Consensus       312 l~~n~l~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~  369 (540)
                      |++|.+++.    ++..+.  .+++|+.|+|++|.+++    .+|..+ ..+++|++|++++|.+++..
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            555555543    233332  25555555555555554    244444 33555555555555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1.6e-24  Score=212.91  Aligned_cols=250  Identities=18%  Similarity=0.201  Sum_probs=144.9

Q ss_pred             EECcCCCCCccCCccccccccccCcEEEccCCcceecCC----hhccCCC-CCCeeeccCCccccccCccccCC-----C
Q 045304          141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP----EEISNLT-NLIIIYLGGNKLNGSIPITLSKL-----Q  210 (540)
Q Consensus       141 L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~  210 (540)
                      ++++.|.+++.+| ..+... .+|++|++++|.+.+..+    ..+..++ +|++|++++|.+++..+..+..+     +
T Consensus         3 ~~ls~n~~~~~~~-~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVE-EFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHH-HHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHH-HHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            3445555554444 222222 445555555555554444    4555666 66666666666665555444443     6


Q ss_pred             CCCeeeeeCccccCcCCccc----cCC-CCCCeEEcCCCCCccccCccC----CC-CCCCCEeeCCCCCCCC-----CCc
Q 045304          211 KLQGLSLADNKLEGSIPNNI----CRL-TELYELDLGSNKFSRSIPACF----SN-LASLRTLSLGSNELTS-----IPL  275 (540)
Q Consensus       211 ~L~~L~l~~n~~~~~~p~~~----~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~-----ip~  275 (540)
                      +|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++     ++.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            67777777776665444432    333 667777777776665444332    22 2467777777776663     233


Q ss_pred             cccCCC-CCcEEECCCCcccCCCcccccc----c-cCcceEEcccceeeec----Ccccccc-CCCCcEEeCcCccCccc
Q 045304          276 TFWNLK-DILYLNFSSNFLTGPLPLEIEN----L-KVLVGIDFSVNNFSGV----IPTTIGS-LKGLQYLFVGYNRLQGS  344 (540)
Q Consensus       276 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~----l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~  344 (540)
                      .+...+ +|++|+|++|++++..+..+..    + ++|+.|+|++|.+++.    ++..+.. .++|++|+|++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            334444 6777777777776655544332    3 4777777777777652    3344444 34777777777777654


Q ss_pred             CC----cccCCCCCCCEEECCCCcCccc-------cCccccCCCCCCeEEcccCcceee
Q 045304          345 IP----YSIGDLISLKSLNLSNNNLSGT-------IPVSLEKLSYLEDLNLSFNKLAGE  392 (540)
Q Consensus       345 ~~----~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~~L~~l~l~~n~l~~~  392 (540)
                      .+    ..+..+++|+.|++++|.+.+.       ++..+..+++|+.+|+++|++...
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            33    3345667777777777774322       223455667777777777776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=2.3e-22  Score=192.58  Aligned_cols=193  Identities=25%  Similarity=0.363  Sum_probs=117.1

Q ss_pred             CCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEe
Q 045304          184 NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTL  263 (540)
Q Consensus       184 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  263 (540)
                      .+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++.  ..+..+++|+.|
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            34455555555555542 23 3555556666666666555322 2 55566666666666665542  245556666666


Q ss_pred             eCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcc
Q 045304          264 SLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG  343 (540)
Q Consensus       264 ~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  343 (540)
                      ++++|.+++++. +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            666666666543 5566666666666666654333  5566667777777776664333  6666777777777777764


Q ss_pred             cCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee
Q 045304          344 SIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~  391 (540)
                      ..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|++++
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            433  6667777777777777775443  6677777777777777754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=6.2e-22  Score=183.93  Aligned_cols=177  Identities=24%  Similarity=0.301  Sum_probs=89.9

Q ss_pred             CCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCC
Q 045304          187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLG  266 (540)
Q Consensus       187 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  266 (540)
                      ..++++++++.++ .+|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3455666666655 3443332  456666666666665555556666666666666666665555555555666666666


Q ss_pred             CCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccC
Q 045304          267 SNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI  345 (540)
Q Consensus       267 ~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  345 (540)
                      +|.++.+|. .+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            655555443 3344555555555555554443333444444444444444444333334444444444444444444333


Q ss_pred             CcccCCCCCCCEEECCCCcCc
Q 045304          346 PYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       346 ~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      +..+..+++|+.|++++|+++
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBC
T ss_pred             HHHHhCCCCCCEEEeeCCcee
Confidence            334444444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2e-24  Score=212.18  Aligned_cols=108  Identities=16%  Similarity=0.105  Sum_probs=66.7

Q ss_pred             EEeccCcccccCCCccccCCCCCCEEEcccCcCccccch----hhhcCCC-CCCEEEccCCcccccCCccccCC-----C
Q 045304           14 LLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSS----IAGVRLP-NLEVLRMRSNNFCGTIPHFIFNA-----S   83 (540)
Q Consensus        14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~   83 (540)
                      ++++++|++++.+|..+...++|++|++++|.+++ .+.    ..+..++ +|++|+|++|.+++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            35677777777776666666667777777777763 332    3335666 67777777777766555555543     6


Q ss_pred             CCCEEEccCCcccccCCccc----cCC-CCCCEEECcCccccCC
Q 045304           84 KLSLLELGDNSFSGFIPDTF----GNL-RNLNKVTLYNNYLTSS  122 (540)
Q Consensus        84 ~L~~L~L~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~  122 (540)
                      +|++|++++|.+++..+..+    ..+ ++|++|++++|.++..
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            67777777777665544432    233 5666666666665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=6.2e-24  Score=206.85  Aligned_cols=254  Identities=15%  Similarity=0.235  Sum_probs=166.2

Q ss_pred             CCCEEEcccCcCccccchhhhcCC--CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc-CCccccCCCCCCE
Q 045304           35 TLKVFEVSNNSLSGSLSSIAGVRL--PNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF-IPDTFGNLRNLNK  111 (540)
Q Consensus        35 ~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~  111 (540)
                      .++.++++++.+.   +.. +..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4666777766554   122 2344  6677777777776655444 44567777777777776654 5566667777777


Q ss_pred             EECcCccccCCCCCccccccCCCCCCCCEEECcCC-CCCcc-CCccccccccccCcEEEccCC-cceec-CChhccCCC-
Q 045304          112 VTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDN-PLDGI-LPGTSVGNLSHSLEYFYMPNC-NVSGG-IPEEISNLT-  186 (540)
Q Consensus       112 L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~~~L~~L~l~~~-~~~~~-~~~~l~~l~-  186 (540)
                      |++++|.++..     .+..+..+++|++|++++| .+++. ++ ..+..+ ++|++|++++| .+++. ++..+..++ 
T Consensus       123 L~L~~~~l~~~-----~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~  195 (336)
T 2ast_B          123 LSLEGLRLSDP-----IVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSE  195 (336)
T ss_dssp             EECTTCBCCHH-----HHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             EeCcCcccCHH-----HHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence            77777765543     4455666777777777777 45532 22 334445 67777777777 66653 566677788 


Q ss_pred             CCCeeeccCC--ccc-cccCccccCCCCCCeeeeeCcc-ccCcCCccccCCCCCCeEEcCCCC-CccccCccCCCCCCCC
Q 045304          187 NLIIIYLGGN--KLN-GSIPITLSKLQKLQGLSLADNK-LEGSIPNNICRLTELYELDLGSNK-FSRSIPACFSNLASLR  261 (540)
Q Consensus       187 ~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~  261 (540)
                      +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  275 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence            8888888888  444 4456666778888888888887 666667778888888888888884 3322223577788888


Q ss_pred             EeeCCCCCCCCCCccccCC-CCCcEEECCCCcccCCCcccccc
Q 045304          262 TLSLGSNELTSIPLTFWNL-KDILYLNFSSNFLTGPLPLEIEN  303 (540)
Q Consensus       262 ~L~l~~n~l~~ip~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~  303 (540)
                      .|++++| ++.-  .+..+ ..+..|++++|++++..|..++.
T Consensus       276 ~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          276 TLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             EEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             EEeccCc-cCHH--HHHHHHhhCcceEEecccCccccCCcccc
Confidence            8888888 3321  12222 23556668888888888876654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=9e-24  Score=205.72  Aligned_cols=229  Identities=21%  Similarity=0.223  Sum_probs=156.5

Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccc-cCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEE
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGS-IPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD  240 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  240 (540)
                      ..++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4566666666666555444 44567777777777776654 566666777777777777777666666777777777777


Q ss_pred             cCCC-CCccc-cCccCCCCCCCCEeeCCCC-CCCC--CCccccCCC-CCcEEECCCC--ccc-CCCccccccccCcceEE
Q 045304          241 LGSN-KFSRS-IPACFSNLASLRTLSLGSN-ELTS--IPLTFWNLK-DILYLNFSSN--FLT-GPLPLEIENLKVLVGID  311 (540)
Q Consensus       241 l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~--ip~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~  311 (540)
                      +++| .+++. ++..+..+++|+.|++++| .+++  ++..+..++ +|++|++++|  .++ +.++..+..+++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            7777 56542 5555667777788888777 7765  566666777 7888888887  344 34566667778888888


Q ss_pred             cccce-eeecCccccccCCCCcEEeCcCcc-CcccCCcccCCCCCCCEEECCCCcCccccCccccCC-CCCCeEEcccCc
Q 045304          312 FSVNN-FSGVIPTTIGSLKGLQYLFVGYNR-LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL-SYLEDLNLSFNK  388 (540)
Q Consensus       312 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~l~l~~n~  388 (540)
                      +++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ++..   .+..+ ..+..|++++|+
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence            88887 666667777888888888888884 33222235677888888888888 3321   23333 236677788888


Q ss_pred             ceeeCCC
Q 045304          389 LAGEIPR  395 (540)
Q Consensus       389 l~~~~p~  395 (540)
                      +++..|.
T Consensus       305 l~~~~~~  311 (336)
T 2ast_B          305 FTTIARP  311 (336)
T ss_dssp             SCCTTCS
T ss_pred             CccccCC
Confidence            8876664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=4e-22  Score=183.89  Aligned_cols=196  Identities=21%  Similarity=0.220  Sum_probs=135.6

Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCc-cccccCccccCCCCCCeeeeeC-ccccCcCCccccCCCCCCeE
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNK-LNGSIPITLSKLQKLQGLSLAD-NKLEGSIPNNICRLTELYEL  239 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L  239 (540)
                      .++++|++++|++++..+..+..+++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            456666666666665555566677777777777775 6655555667777777777776 67765555667777777777


Q ss_pred             EcCCCCCccccCccCCCCCCCC---EeeCCCC-CCCCCCc-cccCCCCCc-EEECCCCcccCCCccccccccCcceEEcc
Q 045304          240 DLGSNKFSRSIPACFSNLASLR---TLSLGSN-ELTSIPL-TFWNLKDIL-YLNFSSNFLTGPLPLEIENLKVLVGIDFS  313 (540)
Q Consensus       240 ~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~ip~-~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  313 (540)
                      ++++|.+++ +|. |..+++|+   .|++++| .++.+|. .+..+++|+ +|++++|.+. .+|......++|+.|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            777777765 454 66677776   7777777 7777554 466677777 7777777776 333332233678888888


Q ss_pred             cce-eeecCccccccC-CCCcEEeCcCccCcccCCcccCCCCCCCEEECCCC
Q 045304          314 VNN-FSGVIPTTIGSL-KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNN  363 (540)
Q Consensus       314 ~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  363 (540)
                      +|. +++..+..|..+ ++|+.|++++|.+++ +|..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            884 776667778888 888888888888874 4433  5677888888765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.7e-21  Score=180.89  Aligned_cols=179  Identities=23%  Similarity=0.279  Sum_probs=132.8

Q ss_pred             CCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECC
Q 045304          211 KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFS  289 (540)
Q Consensus       211 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~  289 (540)
                      ..+.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++++. .+..+++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4566777777776 4555544  577778888887777777777777788888888887777544 46777778888888


Q ss_pred             CCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcccc
Q 045304          290 SNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTI  369 (540)
Q Consensus       290 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  369 (540)
                      +|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|++++|++++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            88777666667777778888888888777666666777777888888888777666666777777888888888777666


Q ss_pred             CccccCCCCCCeEEcccCcceee
Q 045304          370 PVSLEKLSYLEDLNLSFNKLAGE  392 (540)
Q Consensus       370 ~~~~~~~~~L~~l~l~~n~l~~~  392 (540)
                      +..+..+++|+.|++++|++.+.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            66777777788888888877654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.6e-21  Score=186.77  Aligned_cols=191  Identities=25%  Similarity=0.386  Sum_probs=142.4

Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL  241 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  241 (540)
                      ++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  +.+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence            466666666666653 33 46677778888888877775433  77777888888888877743  35777888888888


Q ss_pred             CCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecC
Q 045304          242 GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVI  321 (540)
Q Consensus       242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  321 (540)
                      ++|.+++. +. +..+++|+.|++++|.+++++. +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..
T Consensus       115 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence            88887753 32 7778888888888888887765 6777888888888888875433  777888888888888887544


Q ss_pred             ccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304          322 PTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                      +  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++
T Consensus       190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            3  7788888888888888886553  7888888999998888874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=3.1e-21  Score=188.45  Aligned_cols=250  Identities=19%  Similarity=0.193  Sum_probs=152.6

Q ss_pred             CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCC-ccccC
Q 045304            3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIP-HFIFN   81 (540)
Q Consensus         3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~   81 (540)
                      |+.++.|.. ++++.++++++ .+|..+  .+++++|+|++|.++ .+|...|.++++|++|+|++|.+.+.+| ..|.+
T Consensus         3 p~~~C~C~~-~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~   77 (350)
T 4ay9_X            3 HHRICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN   77 (350)
T ss_dssp             CCSSSEEET-TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred             CCCccEeeC-CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence            444555643 67888888888 667655  368899999999988 7888777889999999999998866555 45778


Q ss_pred             CCCCCE-EEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccc
Q 045304           82 ASKLSL-LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL  160 (540)
Q Consensus        82 l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l  160 (540)
                      ++++++ +.+..|+++...|..|..+++|++|++++|.+...+.     ..+....++..+++.++.-...++...+..+
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~  152 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-----VHKIHSLQKVLLDIQDNINIHTIERNSFVGL  152 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-----CTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred             chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc-----hhhcccchhhhhhhccccccccccccchhhc
Confidence            887765 5566788887778888888888888888888876532     2234445566666655322222221222222


Q ss_pred             cccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeC-ccccCcCCccccCCCCCCeE
Q 045304          161 SHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLAD-NKLEGSIPNNICRLTELYEL  239 (540)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L  239 (540)
                      ..                        .++.|++++|+++...+. .....+|+++++.+ |.+....+..|..+++|++|
T Consensus       153 ~~------------------------~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L  207 (350)
T 4ay9_X          153 SF------------------------ESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  207 (350)
T ss_dssp             BS------------------------SCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred             ch------------------------hhhhhccccccccCCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence            22                        345555555555532222 22334556666653 33332222345666666666


Q ss_pred             EcCCCCCccccCccCCCCCCCCEeeCCC-CCCCCCCccccCCCCCcEEECCCC
Q 045304          240 DLGSNKFSRSIPACFSNLASLRTLSLGS-NELTSIPLTFWNLKDILYLNFSSN  291 (540)
Q Consensus       240 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~ip~~~~~l~~L~~L~L~~n  291 (540)
                      ++++|+++...+..|   .+|+.|.+.+ +.++.+|. +..+++|+.+++.++
T Consensus       208 dLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          208 DISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             ECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             hcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            666666654333333   3344444333 34455553 556667777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=1.4e-20  Score=193.16  Aligned_cols=184  Identities=23%  Similarity=0.308  Sum_probs=94.0

Q ss_pred             CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeee
Q 045304          137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLS  216 (540)
Q Consensus       137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  216 (540)
                      +|+.|++++|.+.+ +| ..+.   ++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|+.|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp-~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LP-DNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CC-SCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCc-cC-HhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            56677777766665 33 2221   45666666666665 444   334566666666666654 444 333  566666


Q ss_pred             eeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCC
Q 045304          217 LADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP  296 (540)
Q Consensus       217 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~  296 (540)
                      +++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.++++|. +.  ++|+.|+|++|.++ .
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-c
Confidence            66666554 443   44556666666665554 333   34555566666555555555 33  55555555555555 3


Q ss_pred             CccccccccCc-------ceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCccc
Q 045304          297 LPLEIENLKVL-------VGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSI  349 (540)
Q Consensus       297 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  349 (540)
                      +|. +..  +|       +.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            333 322  33       44444444444 234434444444444444444444444333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=3.1e-20  Score=167.22  Aligned_cols=158  Identities=26%  Similarity=0.292  Sum_probs=70.8

Q ss_pred             CCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCC
Q 045304          187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLG  266 (540)
Q Consensus       187 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  266 (540)
                      +|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44444444444443333334444444444444444443333334444445555555444444433344444445555554


Q ss_pred             CCCCCCCCcc-ccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccC
Q 045304          267 SNELTSIPLT-FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI  345 (540)
Q Consensus       267 ~n~l~~ip~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  345 (540)
                      +|.+++++.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+       .+++|++|+++.|.++|.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence            4444443332 3344444444444444443333334444444444444443332       2234444444444444444


Q ss_pred             CcccCC
Q 045304          346 PYSIGD  351 (540)
Q Consensus       346 ~~~~~~  351 (540)
                      |..++.
T Consensus       182 p~~~~~  187 (208)
T 2o6s_A          182 RNSAGS  187 (208)
T ss_dssp             BCTTSS
T ss_pred             eccCcc
Confidence            444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=3.7e-20  Score=190.02  Aligned_cols=188  Identities=26%  Similarity=0.364  Sum_probs=153.4

Q ss_pred             cCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcC
Q 045304          163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG  242 (540)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  242 (540)
                      +++.|++++|.+++ +|..+.  ++|++|++++|.++ .+|   ..+++|+.|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            79999999999886 777653  78999999999998 566   457899999999999986 676 655  89999999


Q ss_pred             CCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCc
Q 045304          243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP  322 (540)
Q Consensus       243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  322 (540)
                      +|.+++ +|.   .+++|+.|++++|.++++|.   .+++|++|+|++|.+++ +|. +.  ++|+.|+|++|.++ .+|
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence            999987 565   57899999999999998887   56889999999999886 665 55  88999999999988 566


Q ss_pred             cccccCCCC-------cEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCC
Q 045304          323 TTIGSLKGL-------QYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLS  377 (540)
Q Consensus       323 ~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  377 (540)
                      . +..  +|       +.|+|++|.++ .+|..+..+++|+.|++++|.+++.+|..+..++
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            5 544  66       89999999998 5787777889999999999999988887776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=7.4e-20  Score=164.77  Aligned_cols=162  Identities=27%  Similarity=0.342  Sum_probs=134.0

Q ss_pred             ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304          162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL  241 (540)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  241 (540)
                      +++++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            56777777777777665666788888999999999888766667788899999999999988766667888999999999


Q ss_pred             CCCCCccccCccCCCCCCCCEeeCCCCCCCCCCcc-ccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeec
Q 045304          242 GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLT-FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV  320 (540)
Q Consensus       242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  320 (540)
                      ++|.+++..+..|..+++|+.|++++|.++++|.. +..+++|++|++++|.+.+       .++.|+.|+++.|.++|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence            99999877777788899999999999999987664 6788999999999997764       345788899999999999


Q ss_pred             CccccccCCC
Q 045304          321 IPTTIGSLKG  330 (540)
Q Consensus       321 ~~~~~~~l~~  330 (540)
                      +|..++.++.
T Consensus       181 ip~~~~~l~~  190 (208)
T 2o6s_A          181 VRNSAGSVAP  190 (208)
T ss_dssp             BBCTTSSBCT
T ss_pred             eeccCccccC
Confidence            9988887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.4e-19  Score=176.59  Aligned_cols=200  Identities=19%  Similarity=0.133  Sum_probs=90.6

Q ss_pred             CEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCc
Q 045304           86 SLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLE  165 (540)
Q Consensus        86 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~  165 (540)
                      ++++.++++++ .+|..+  .+++++|+|++|+++..+.     ..|.++++|++|+|++|.+.+.++...+..+     
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~-----~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L-----   78 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQK-----GAFSGFGDLEKIEISQNDVLEVIEADVFSNL-----   78 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECT-----TSSTTCTTCCEEEEECCTTCCEECTTSBCSC-----
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCH-----HHHcCCCCCCEEECcCCCCCCccChhHhhcc-----
Confidence            45566666665 345444  2466677777776665321     2456666666666666666554442333333     


Q ss_pred             EEEccCCcceecCChhccCCCCCCe-eeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC-
Q 045304          166 YFYMPNCNVSGGIPEEISNLTNLII-IYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS-  243 (540)
Q Consensus       166 ~L~l~~~~~~~~~~~~l~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~-  243 (540)
                                          +++++ +.+..|+++...|..|..+++|++|++++|.+....+..+....++..|++.+ 
T Consensus        79 --------------------~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X           79 --------------------PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             --------------------TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred             --------------------hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc
Confidence                                33322 22233344433334444444444444444444433333333333344444432 


Q ss_pred             CCCccccCccCCCCC-CCCEeeCCCCCCCCCCccccCCCCCcEEECCC-CcccCCCccccccccCcceEEcccceee
Q 045304          244 NKFSRSIPACFSNLA-SLRTLSLGSNELTSIPLTFWNLKDILYLNFSS-NFLTGPLPLEIENLKVLVGIDFSVNNFS  318 (540)
Q Consensus       244 n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~  318 (540)
                      +.+....+..|..+. .++.|++++|.++.+|...+...+|+.+++.+ |.+....+..|..+++|+.|++++|+++
T Consensus       139 ~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             TTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            233322233333332 34445555555554444444444444444443 2222222223444444444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=4.2e-20  Score=167.50  Aligned_cols=156  Identities=24%  Similarity=0.291  Sum_probs=87.6

Q ss_pred             CeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccC-ccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCC
Q 045304          213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSN  291 (540)
Q Consensus       213 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n  291 (540)
                      +.+++++|.++ .+|..+.  ..+++|++++|.+++..+ ..|..+++|+.|++++|.+++                   
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-------------------   71 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-------------------   71 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-------------------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-------------------
Confidence            35555555555 2444332  234555555555554432 234445555555555555444                   


Q ss_pred             cccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCc
Q 045304          292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV  371 (540)
Q Consensus       292 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  371 (540)
                          ..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|+.|++++|++++..|.
T Consensus        72 ----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           72 ----IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             ----ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             ----ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence                4444455555555555555555555555555666666666666666655566666666666666666666666566


Q ss_pred             cccCCCCCCeEEcccCcceeeCC
Q 045304          372 SLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       372 ~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      .|..+++|+.|++++|++.+..+
T Consensus       148 ~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTTTCTTCCEEECCSCCEECSGG
T ss_pred             HhcCCCCCCEEEecCcCCcCCCc
Confidence            66666666666666666665444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=1.6e-19  Score=171.28  Aligned_cols=172  Identities=23%  Similarity=0.322  Sum_probs=112.8

Q ss_pred             cCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEE
Q 045304          207 SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL  286 (540)
Q Consensus       207 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L  286 (540)
                      ..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|+.|++++|.++++|. +..+++|++|
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence            3455566666666665532 2 25556666666666666654433  5666666666666666666543 5566666666


Q ss_pred             ECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304          287 NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       287 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      ++++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            6666666643  3466667777777777777654  456777778888888887775544  777778888888888777


Q ss_pred             cccCccccCCCCCCeEEcccCccee
Q 045304          367 GTIPVSLEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       367 ~~~~~~~~~~~~L~~l~l~~n~l~~  391 (540)
                      +. + .+..+++|+.|++++|+++.
T Consensus       192 ~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          192 DL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             BC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CC-h-hhccCCCCCEEECcCCcccC
Confidence            53 3 36777888888888887764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=1.2e-19  Score=164.52  Aligned_cols=153  Identities=22%  Similarity=0.297  Sum_probs=83.1

Q ss_pred             CeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCc
Q 045304          213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF  292 (540)
Q Consensus       213 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~  292 (540)
                      +.++++++.++ .+|..+.  ++|++|++++|.+++..+..|..+++|+.|++++|.++.                    
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--------------------   70 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--------------------   70 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence            34556666555 3444333  456666666666665555555555566666655555555                    


Q ss_pred             ccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCcc
Q 045304          293 LTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS  372 (540)
Q Consensus       293 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  372 (540)
                         ..|..|..+++|++|+|++|.++...+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..
T Consensus        71 ---~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  147 (220)
T 2v9t_B           71 ---LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT  147 (220)
T ss_dssp             ---ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ---cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence               33444444444444444444444333344455555555555555555555555555555555555555555555555


Q ss_pred             ccCCCCCCeEEcccCccee
Q 045304          373 LEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       373 ~~~~~~L~~l~l~~n~l~~  391 (540)
                      +..+++|+.+++++|++.+
T Consensus       148 ~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTCTTCCEEECCSSCEEC
T ss_pred             HhCCCCCCEEEeCCCCcCC
Confidence            5555566666666665554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=3.2e-19  Score=169.17  Aligned_cols=171  Identities=23%  Similarity=0.342  Sum_probs=115.6

Q ss_pred             CCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEe
Q 045304          184 NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTL  263 (540)
Q Consensus       184 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  263 (540)
                      .+++|+.|++++|.+... + .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|+.|
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence            455566666666665532 2 25566666666666666664332  6666677777777766654 22 36667777777


Q ss_pred             eCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcc
Q 045304          264 SLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG  343 (540)
Q Consensus       264 ~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  343 (540)
                      ++++|.+++++ .+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            77777776653 456667777777777777654  456777778888888887776544  7778888888888888875


Q ss_pred             cCCcccCCCCCCCEEECCCCcCcc
Q 045304          344 SIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       344 ~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                       ++ .+..+++|+.|++++|+++.
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -Ch-hhccCCCCCEEECcCCcccC
Confidence             33 37788888888888888774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=4.3e-19  Score=184.24  Aligned_cols=190  Identities=22%  Similarity=0.299  Sum_probs=143.7

Q ss_pred             CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304          164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS  243 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  243 (540)
                      +..+.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            4444555555554333  4567888888888888874 34 47788888888888888886443  78888888888888


Q ss_pred             CCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcc
Q 045304          244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPT  323 (540)
Q Consensus       244 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  323 (540)
                      |.+.+ ++ .+..+++|+.|+|++|.+++++ .+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+++..| 
T Consensus        97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             SCCCC-CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCCC-Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence            88875 33 5788888888888888888864 467788888888888888765  567788888888888888886655 


Q ss_pred             ccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304          324 TIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT  368 (540)
Q Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  368 (540)
                       +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+.
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence             77788888888888888754  3577888888888888887754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=7.5e-19  Score=182.41  Aligned_cols=193  Identities=24%  Similarity=0.354  Sum_probs=161.1

Q ss_pred             CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeee
Q 045304          137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLS  216 (540)
Q Consensus       137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  216 (540)
                      .+..+.+..+.+....+   ...+ .+|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|+
T Consensus        22 ~l~~l~l~~~~i~~~~~---~~~L-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT---QNEL-NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC---HHHH-TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHhccCCCcccccc---hhcC-CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            34455666666665533   3445 789999999999874 34 58999999999999999987655  88999999999


Q ss_pred             eeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCC
Q 045304          217 LADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP  296 (540)
Q Consensus       217 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~  296 (540)
                      |++|.+.+ +| .+..+++|++|+|++|.+.+.  +.+..+++|+.|+|++|.++++ ..+..+++|+.|+|++|.+.+.
T Consensus        94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc
Confidence            99999985 33 688999999999999999863  4588899999999999999998 5788899999999999999977


Q ss_pred             CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCC
Q 045304          297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIP  346 (540)
Q Consensus       297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  346 (540)
                      .|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+...
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            66  88999999999999999864  468889999999999999986533

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=6.4e-19  Score=172.68  Aligned_cols=177  Identities=26%  Similarity=0.249  Sum_probs=90.1

Q ss_pred             eeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcccc-CCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC
Q 045304          190 IIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN  268 (540)
Q Consensus       190 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  268 (540)
                      .++++++.++ .+|..+.  +.++.|+|++|.+++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            4555555554 2333222  2345555555555544444444 4555555555555555444444555555555555555


Q ss_pred             CCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcc
Q 045304          269 ELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS  348 (540)
Q Consensus       269 ~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  348 (540)
                      .++.                       ..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..
T Consensus        99 ~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           99 HLHT-----------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             CCCE-----------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             cCCc-----------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence            4444                       44444455555555555555555555555555555666666666555433333


Q ss_pred             c---CCCCCCCEEECCCCcCccccCccccCCCC--CCeEEcccCcceee
Q 045304          349 I---GDLISLKSLNLSNNNLSGTIPVSLEKLSY--LEDLNLSFNKLAGE  392 (540)
Q Consensus       349 ~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~l~l~~n~l~~~  392 (540)
                      +   ..+++|+.|+|++|++++..+..+..++.  ++.|++++|++.+.
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            3   34566666666666666444444555554  35566666666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.8e-18  Score=156.74  Aligned_cols=152  Identities=23%  Similarity=0.263  Sum_probs=107.7

Q ss_pred             CeeeccCCccccccCccccCCCCCCeeeeeCccccCcCC-ccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCC
Q 045304          189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP-NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGS  267 (540)
Q Consensus       189 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  267 (540)
                      +.+++++|.++ .+|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            58999999998 4666553  467899999999997755 4588999999999999999988888899999999999888


Q ss_pred             CCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCC
Q 045304          268 NELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIP  346 (540)
Q Consensus       268 n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  346 (540)
                      |.+++++. .+..+++|++|+|++|.+.+..|..+.                        .+++|++|+|++|.+++..|
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI------------------------GLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST------------------------TCTTCSEEECTTSCCCCBCT
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC------------------------CCccCCEEECCCCcCCEECH
Confidence            88887654 355566666666666655554444444                        44455555555555554445


Q ss_pred             cccCCCCCCCEEECCCCcCcc
Q 045304          347 YSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       347 ~~~~~l~~L~~L~l~~n~l~~  367 (540)
                      ..+..+++|+.|++++|.+.+
T Consensus       147 ~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          147 GAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTTTTCTTCCEEECCSCCEEC
T ss_pred             HHhcCCCCCCEEEecCcCCcC
Confidence            555555555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.5e-18  Score=155.81  Aligned_cols=150  Identities=23%  Similarity=0.346  Sum_probs=111.9

Q ss_pred             CeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC
Q 045304          189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN  268 (540)
Q Consensus       189 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  268 (540)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            57888999888 5666554  68999999999999877778999999999999999999988999999999999999999


Q ss_pred             CCCCCCcc-ccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304          269 ELTSIPLT-FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL  341 (540)
Q Consensus       269 ~l~~ip~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  341 (540)
                      .++.+|.. +..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            99987764 45677777777777766665555555555555555555555544444444444444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=3.8e-18  Score=167.17  Aligned_cols=175  Identities=24%  Similarity=0.260  Sum_probs=116.3

Q ss_pred             CEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhcc-CCCCCCeeeccCCccccccCccccCCCCCCeeee
Q 045304          139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEIS-NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSL  217 (540)
Q Consensus       139 ~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  217 (540)
                      +.++++++.+... | ..   ++..++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|+|
T Consensus        21 ~~l~c~~~~l~~i-P-~~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNV-P-QS---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSC-C-SS---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCcc-C-cc---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            3455555555442 2 11   124566666666666665555565 6777777777777777666667777777777777


Q ss_pred             eCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccc----cCCCCCcEEECCCCcc
Q 045304          218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTF----WNLKDILYLNFSSNFL  293 (540)
Q Consensus       218 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~----~~l~~L~~L~L~~n~l  293 (540)
                      ++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|.++.+|...    ..+++|+.|+|++|++
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            777777666666777777788888877777777777777777888888777777776654    3566777777777777


Q ss_pred             cCCCccccccccC--cceEEcccceee
Q 045304          294 TGPLPLEIENLKV--LVGIDFSVNNFS  318 (540)
Q Consensus       294 ~~~~~~~~~~l~~--L~~L~l~~n~l~  318 (540)
                      .+..+..+..++.  ++.|+|++|.+.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCcc
Confidence            6555455555554  355666666655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=7.4e-18  Score=153.79  Aligned_cols=152  Identities=26%  Similarity=0.282  Sum_probs=76.4

Q ss_pred             CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304          164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS  243 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  243 (540)
                      .+.++.+++.+. .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|.+....+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            344444444443 3333222  4555555555555555555555555555555555555443334445555555555555


Q ss_pred             CCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee
Q 045304          244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS  318 (540)
Q Consensus       244 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  318 (540)
                      |.+++..+..|..+++|+.|++++|.++.+|..+..+++|++|+|++|++.+..+..+..+++|+.|++++|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            555544444455555555555555555555555555555555555555544433333444444444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=6.1e-18  Score=154.33  Aligned_cols=153  Identities=25%  Similarity=0.306  Sum_probs=101.3

Q ss_pred             CCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECC
Q 045304          211 KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFS  289 (540)
Q Consensus       211 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~  289 (540)
                      ..+.++.+++.+. .+|..+.  ++|++|+|++|.+++..|..|..+++|+.|++++|.++.+|. .+..+++|++|+|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3556777777776 5665443  778888888888887777778888888888888888877664 35667777777777


Q ss_pred             CCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304          290 SNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       290 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                      +|++.+..+..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            77776555555566666666666666665 455555556666666666666654444455555556666666555553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=1.3e-18  Score=154.23  Aligned_cols=129  Identities=26%  Similarity=0.292  Sum_probs=65.7

Q ss_pred             CeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCcc--ccCCCCCcEEECCCCcccCCCccccccccCcceEEccc
Q 045304          237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLT--FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV  314 (540)
Q Consensus       237 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  314 (540)
                      +.+++++|.++ .+|..+.  .+++.|++++|.++.++..  +..+++|++|+|++|.+++..|..+..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            45555555553 3444332  2555555555555554432  44555555555555555554455555555555555555


Q ss_pred             ceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304          315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT  368 (540)
Q Consensus       315 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  368 (540)
                      |.+++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|.+++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            555544444455555555555555555544454555555555555555554433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.5e-18  Score=153.17  Aligned_cols=153  Identities=20%  Similarity=0.263  Sum_probs=81.4

Q ss_pred             cCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEE
Q 045304          207 SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL  286 (540)
Q Consensus       207 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L  286 (540)
                      ..+++|+.|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+                
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l----------------  100 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDV----------------  100 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTC----------------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCcc----------------
Confidence            34555666666666655 334 3555556666666555443  122344455555555555544                


Q ss_pred             ECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc-CcccCCcccCCCCCCCEEECCCCcC
Q 045304          287 NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR-LQGSIPYSIGDLISLKSLNLSNNNL  365 (540)
Q Consensus       287 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l  365 (540)
                             .+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++
T Consensus       101 -------~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          101 -------TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             -------BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred             -------CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence                   44444445555555555555555555455555555566666666665 33 333 455566666666666666


Q ss_pred             ccccCccccCCCCCCeEEcccCcce
Q 045304          366 SGTIPVSLEKLSYLEDLNLSFNKLA  390 (540)
Q Consensus       366 ~~~~~~~~~~~~~L~~l~l~~n~l~  390 (540)
                      ++ ++ .+..+++|+.|++++|++.
T Consensus       172 ~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          172 HD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CC-CT-TGGGCSSCCEEEECBC---
T ss_pred             cC-hH-HhccCCCCCEEEeeCcccC
Confidence            54 22 4556666666666666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=2.6e-21  Score=199.78  Aligned_cols=203  Identities=19%  Similarity=0.207  Sum_probs=126.8

Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCcc-------------ccCCCCCccccccCCCCCCCCEEE-CcC
Q 045304           80 FNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY-------------LTSSTSDLNFLSSLSNCKTLTYID-LSD  145 (540)
Q Consensus        80 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~~~l~~l~~L~~L~-l~~  145 (540)
                      ..+++|+.|+|++|.+. .+|..++++++|++|++++|.             ..+.     .+..+..+++|+.|+ ++.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-----~~~~l~~l~~L~~L~~l~~  419 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-----EKETLQYFSTLKAVDPMRA  419 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-----HHHHHHHHHHHHHHCGGGH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-----CHHHHHHHHhcccCcchhh
Confidence            34556666666666665 456666666666666665443             1111     333444455555555 333


Q ss_pred             CCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCc
Q 045304          146 NPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGS  225 (540)
Q Consensus       146 n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  225 (540)
                      |.+             ..|..+.+.+|.+... |.     ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .
T Consensus       420 n~~-------------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~  477 (567)
T 1dce_A          420 AYL-------------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A  477 (567)
T ss_dssp             HHH-------------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred             ccc-------------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence            321             1233333333433321 11     247777777777775 554 777778888888888777 6


Q ss_pred             CCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC--CccccCCCCCcEEECCCCcccCCCccc---
Q 045304          226 IPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI--PLTFWNLKDILYLNFSSNFLTGPLPLE---  300 (540)
Q Consensus       226 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i--p~~~~~l~~L~~L~L~~n~l~~~~~~~---  300 (540)
                      +|..++.+++|+.|+|++|.+++ +| .++.+++|+.|++++|.++++  |..+..+++|+.|+|++|.+++..|..   
T Consensus       478 lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l  555 (567)
T 1dce_A          478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL  555 (567)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH
T ss_pred             cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH
Confidence            77777788888888888887775 45 677788888888888888775  677777888888888888887665422   


Q ss_pred             cccccCcceEEc
Q 045304          301 IENLKVLVGIDF  312 (540)
Q Consensus       301 ~~~l~~L~~L~l  312 (540)
                      +..+++|+.|++
T Consensus       556 ~~~lp~L~~L~l  567 (567)
T 1dce_A          556 AEMLPSVSSILT  567 (567)
T ss_dssp             HHHCTTCSEEEC
T ss_pred             HHHCcccCccCC
Confidence            334677777754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.7e-18  Score=161.47  Aligned_cols=168  Identities=20%  Similarity=0.256  Sum_probs=87.6

Q ss_pred             CCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEee
Q 045304          185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS  264 (540)
Q Consensus       185 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  264 (540)
                      +.+++.++++++.++...  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|+.|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555566666655322  35566666666666666652 33 45666666666666666664433  66666666666


Q ss_pred             CCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCccc
Q 045304          265 LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS  344 (540)
Q Consensus       265 l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  344 (540)
                      +++|.++++|....  ++|++|++++|++.+.  ..+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++.
T Consensus        92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            66666666554322  5555555555555532  1244444455555555444432 1 344444444444444444433


Q ss_pred             CCcccCCCCCCCEEECCCCcCc
Q 045304          345 IPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       345 ~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                        ..+..+++|+.|++++|.++
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEE
T ss_pred             --HHhccCCCCCEEeCCCCccc
Confidence              23344444444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=1.2e-17  Score=148.74  Aligned_cols=127  Identities=22%  Similarity=0.273  Sum_probs=58.0

Q ss_pred             cCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcC
Q 045304          163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG  242 (540)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  242 (540)
                      +|++|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4444444444443 223 3444455555555555333  11234444555555555555544444444455555555555


Q ss_pred             CCCCccccCccCCCCCCCCEeeCCCCC-CCCCCccccCCCCCcEEECCCCccc
Q 045304          243 SNKFSRSIPACFSNLASLRTLSLGSNE-LTSIPLTFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~ip~~~~~l~~L~~L~L~~n~l~  294 (540)
                      +|.+++..+..+..+++|+.|++++|. ++.+| .+..+++|++|++++|.+.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence            555544444444444455555555444 44443 3344444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=3.4e-20  Score=191.35  Aligned_cols=122  Identities=27%  Similarity=0.287  Sum_probs=85.5

Q ss_pred             CCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcC
Q 045304          259 SLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGY  338 (540)
Q Consensus       259 ~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  338 (540)
                      .|+.|++++|.++++|. +..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            46777777777777775 677777777777777777 666677777777777777777775 45 677777777777777


Q ss_pred             ccCcccC-CcccCCCCCCCEEECCCCcCccccCcc---ccCCCCCCeEEc
Q 045304          339 NRLQGSI-PYSIGDLISLKSLNLSNNNLSGTIPVS---LEKLSYLEDLNL  384 (540)
Q Consensus       339 n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~L~~l~l  384 (540)
                      |.+++.. |..+..+++|+.|++++|++++..|..   +..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            7777665 777777777777777777777554422   233667776653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=9.1e-19  Score=186.46  Aligned_cols=181  Identities=23%  Similarity=0.225  Sum_probs=118.3

Q ss_pred             cCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCC
Q 045304          177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSN  256 (540)
Q Consensus       177 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  256 (540)
                      ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            44677888889999999999888 67766778899999999999988 78888889999999999999988 67888889


Q ss_pred             CCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccC-cceEEcccceeeecCccccccCCCCcEEe
Q 045304          257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKV-LVGIDFSVNNFSGVIPTTIGSLKGLQYLF  335 (540)
Q Consensus       257 l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  335 (540)
                      +++|++|+|++|.++.+|..+..+++|++|+|++|.+.+.+|..+..+.. +..++|++|.+++.+|..      |+.|+
T Consensus       292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~  365 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE  365 (727)
T ss_dssp             GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred             CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence            99999999999999889888888999999999999998888877765432 234778888888877753      45556


Q ss_pred             CcCc--------cCcccCCcccCCCCCCCEEECCCCcCc
Q 045304          336 VGYN--------RLQGSIPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       336 l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      ++.|        .+.+..+..+..+..+....+++|-+.
T Consensus       366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ------------------------------------CCC
T ss_pred             eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            6665        333334444455556666677777664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=4.9e-18  Score=158.34  Aligned_cols=171  Identities=18%  Similarity=0.242  Sum_probs=147.9

Q ss_pred             CCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEE
Q 045304          208 KLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLN  287 (540)
Q Consensus       208 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~  287 (540)
                      .+..+..++++++.+++..  .+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+++++. +..+++|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            4566778889999888543  57889999999999999974 45 68899999999999999999887 88999999999


Q ss_pred             CCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304          288 FSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       288 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                      +++|++.+. +.. .. ++|+.|++++|.+++.  ..+..+++|+.|++++|++++. + .+..+++|+.|++++|++++
T Consensus        92 L~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            999999864 332 23 8999999999999864  3588999999999999999965 3 68899999999999999997


Q ss_pred             ccCccccCCCCCCeEEcccCcceee
Q 045304          368 TIPVSLEKLSYLEDLNLSFNKLAGE  392 (540)
Q Consensus       368 ~~~~~~~~~~~L~~l~l~~n~l~~~  392 (540)
                      .  ..+..+++|+.|++++|++.+.
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            6  6788999999999999998764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=9.7e-18  Score=162.16  Aligned_cols=285  Identities=17%  Similarity=0.136  Sum_probs=146.4

Q ss_pred             CCCCCEEeccCcccccCCCccccC-CCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC------
Q 045304            9 LRNLELLVLSHNKLVGVIPTKVFN-VSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN------   81 (540)
Q Consensus         9 l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------   81 (540)
                      +.+++.|.++++ +....-..+.. +++|+.|||++|.+.. ..... ..++.++.+.+..+.+   .+..|.+      
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~-~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGKA-GTYPNGKFYIYMANFV---PAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEESS-SSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCcc-cccccccccccccccc---CHHHhcccccccc
Confidence            567888888764 22111122333 7889999999888761 11110 1222234444444422   2233444      


Q ss_pred             --CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCC---CccCCccc
Q 045304           82 --ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPL---DGILPGTS  156 (540)
Q Consensus        82 --l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~~~  156 (540)
                        +++|+.|++.+ .++.+.+.+|.+|++|+.+++.+|.+.....     ..|.++.++..+.+..+..   ...+....
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~-----~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~  171 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP-----EALADSVTAIFIPLGSSDAYRFKNRWEHFA  171 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECT-----TSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccch-----hhhcCCCceEEecCcchhhhhccccccccc
Confidence              77777777766 6665556667777777777777776655422     3455565565555544211   00011111


Q ss_pred             cccccccCc-EEEccCCcceecCChhc----cCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcccc
Q 045304          157 VGNLSHSLE-YFYMPNCNVSGGIPEEI----SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC  231 (540)
Q Consensus       157 ~~~l~~~L~-~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~  231 (540)
                      +..+ ..|+ .+.+....   .++..+    ....+++.+.+.++-...........+++|+.+++++|.++...+..|.
T Consensus       172 f~~~-~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~  247 (329)
T 3sb4_A          172 FIEG-EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA  247 (329)
T ss_dssp             EEES-CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred             cccc-cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence            2222 2333 22222111   111111    1223444454444321111111111356666666666666644445666


Q ss_pred             CCCCCCeEEcCCCCCccccCccCCCCCCCC-EeeCCCCCCCCCC-ccccCCCCCcEEECCCCcccCCCccccccccCcce
Q 045304          232 RLTELYELDLGSNKFSRSIPACFSNLASLR-TLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVG  309 (540)
Q Consensus       232 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~ip-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  309 (540)
                      .+++|+++++.+| +....+.+|..+++|+ .+++.+ .++.|+ .+|.++++|+.+++++|.+....+..|.++++|+.
T Consensus       248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence            6666666666665 5555556666666666 666665 555554 35666666666666666666555566666666666


Q ss_pred             EE
Q 045304          310 ID  311 (540)
Q Consensus       310 L~  311 (540)
                      ++
T Consensus       326 ly  327 (329)
T 3sb4_A          326 IY  327 (329)
T ss_dssp             EE
T ss_pred             hc
Confidence            54

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=1.5e-18  Score=184.71  Aligned_cols=193  Identities=23%  Similarity=0.241  Sum_probs=129.0

Q ss_pred             eccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCC
Q 045304          192 YLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT  271 (540)
Q Consensus       192 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  271 (540)
                      ++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            34445555 56778899999999999999998 78888889999999999999998 88999999999999999999999


Q ss_pred             CCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCC-CcEEeCcCccCcccCCcccC
Q 045304          272 SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKG-LQYLFVGYNRLQGSIPYSIG  350 (540)
Q Consensus       272 ~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~  350 (540)
                      .+|..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..  
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~--  360 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE--  360 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc--
Confidence            99999999999999999999997 77888999999999999999999999988765422 234789999999988864  


Q ss_pred             CCCCCCEEECCCC--------cCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          351 DLISLKSLNLSNN--------NLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       351 ~l~~L~~L~l~~n--------~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                          |+.|+++.|        .+.+..+..+..+..+....+++|-+.+...
T Consensus       361 ----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          361 ----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             ---------------------------------------------CCCGGGC
T ss_pred             ----cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence                456667766        3444444455566667777888887764433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=3.7e-17  Score=144.75  Aligned_cols=132  Identities=26%  Similarity=0.275  Sum_probs=100.7

Q ss_pred             CEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCcc-ccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304          261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL-EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN  339 (540)
Q Consensus       261 ~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  339 (540)
                      +.+++++|.++.+|..+..  ++++|++++|.+.+..+. .+..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6777788877777775543  777888888877765554 4777778888888888887777777777788888888888


Q ss_pred             cCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      ++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            8877777777777888888888888887777777777888888888887776655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=6.7e-17  Score=143.01  Aligned_cols=130  Identities=28%  Similarity=0.350  Sum_probs=92.0

Q ss_pred             CEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304          261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR  340 (540)
Q Consensus       261 ~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  340 (540)
                      +.+++++|.++.+|..+.  ++|++|++++|.+. .+|..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            456666666666665432  45666666666665 455666677777777777777776666677777777777777777


Q ss_pred             CcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeC
Q 045304          341 LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEI  393 (540)
Q Consensus       341 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  393 (540)
                      +++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            77777777777788888888888887665566777788888888888777644

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=1.8e-16  Score=137.17  Aligned_cols=131  Identities=21%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             CCCCeEEcCCCCCc-cccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEc
Q 045304          234 TELYELDLGSNKFS-RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDF  312 (540)
Q Consensus       234 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  312 (540)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.++++ ..+..+++|++|++++|.+.+.+|..+..+++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            34555555555554 34444445555555555555554444 33344444444444444444333333333444444444


Q ss_pred             ccceeeecC-ccccccCCCCcEEeCcCccCcccCC---cccCCCCCCCEEECCCCcC
Q 045304          313 SVNNFSGVI-PTTIGSLKGLQYLFVGYNRLQGSIP---YSIGDLISLKSLNLSNNNL  365 (540)
Q Consensus       313 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l  365 (540)
                      ++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            444443321 1333444444444444444443222   2334444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=2.6e-16  Score=136.21  Aligned_cols=107  Identities=24%  Similarity=0.272  Sum_probs=57.5

Q ss_pred             CCCCeeeccCCccc-cccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEee
Q 045304          186 TNLIIIYLGGNKLN-GSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS  264 (540)
Q Consensus       186 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  264 (540)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554 44555555555555555555555543  4455555555555555555554555444555555555


Q ss_pred             CCCCCCCCCC--ccccCCCCCcEEECCCCccc
Q 045304          265 LGSNELTSIP--LTFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       265 l~~n~l~~ip--~~~~~l~~L~~L~L~~n~l~  294 (540)
                      +++|.++++|  ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            5555555544  34444445555555554444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=2.5e-16  Score=133.34  Aligned_cols=127  Identities=20%  Similarity=0.166  Sum_probs=62.4

Q ss_pred             CCCCeEEcCCCCCc-cccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEc
Q 045304          234 TELYELDLGSNKFS-RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDF  312 (540)
Q Consensus       234 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  312 (540)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.++++ ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            34555555555554 44455555555555555555555544 34444455555555555555444444444555555555


Q ss_pred             ccceeeec-CccccccCCCCcEEeCcCccCcccCC---cccCCCCCCCEEECC
Q 045304          313 SVNNFSGV-IPTTIGSLKGLQYLFVGYNRLQGSIP---YSIGDLISLKSLNLS  361 (540)
Q Consensus       313 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  361 (540)
                      ++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55555432 22444445555555555555543333   234444455554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=8.9e-16  Score=134.04  Aligned_cols=133  Identities=23%  Similarity=0.239  Sum_probs=91.2

Q ss_pred             CCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304          260 LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN  339 (540)
Q Consensus       260 L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  339 (540)
                      .+.+++++++++.+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3456666666666654432  46666666666666555555666777777777777777655566677777777777777


Q ss_pred             cCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      .+++..+..+..+++|++|++++|++++..+..+..+++|+.+++++|++.+..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            7776666667777777888888777776555556777778888888887776554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=2.2e-14  Score=141.51  Aligned_cols=263  Identities=13%  Similarity=0.101  Sum_probs=129.3

Q ss_pred             CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 045304           34 STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVT  113 (540)
Q Consensus        34 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  113 (540)
                      ..++.+.+..+ ++ .|+...|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+..+...+|.+|++|+.++
T Consensus       113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            44444444322 22 3444444432 3444444433 332333333332 344444443 33333334444444455554


Q ss_pred             CcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeec
Q 045304          114 LYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYL  193 (540)
Q Consensus       114 l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  193 (540)
                      +..|.++..+..     .|. +.+|+.+.+..+ +... +...+..+ .+|+.+.+..+ +...-..+|.. .+|+.+.+
T Consensus       187 l~~n~l~~I~~~-----aF~-~~~L~~l~lp~~-l~~I-~~~aF~~~-~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          187 LSKTKITKLPAS-----TFV-YAGIEEVLLPVT-LKEI-GSQAFLKT-SQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL  255 (401)
T ss_dssp             CTTSCCSEECTT-----TTT-TCCCSEEECCTT-CCEE-CTTTTTTC-TTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred             cCCCcceEechh-----hEe-ecccCEEEeCCc-hhee-hhhHhhCC-CCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence            444444432211     121 344444444422 2221 11233333 34455544432 22222333444 45666666


Q ss_pred             cCCccccccCccccCCCCCCeeeeeCcccc-----CcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC
Q 045304          194 GGNKLNGSIPITLSKLQKLQGLSLADNKLE-----GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN  268 (540)
Q Consensus       194 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  268 (540)
                      . +.++.....+|.+|++|+.+++.++.+.     ..-+..|..+++|+.+++. +.+...-..+|..|++|+.+++..+
T Consensus       256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            3 3344344556666666666666665543     2334566677777777776 3455555666777777777777543


Q ss_pred             CCCCCCc-cccCCCCCcEEECCCCcccCCCcccccccc-CcceEEccccee
Q 045304          269 ELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLK-VLVGIDFSVNNF  317 (540)
Q Consensus       269 ~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l  317 (540)
                       ++.++. +|.++ +|+.+++.+|.+....+..|..++ .++.|.+..+.+
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence             555443 55666 777777777766655555566553 566676666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=2e-14  Score=142.46  Aligned_cols=198  Identities=14%  Similarity=0.097  Sum_probs=109.3

Q ss_pred             hhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCC
Q 045304          180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLAS  259 (540)
Q Consensus       180 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  259 (540)
                      ..+..+.+|+.+.+..+ +.......|.++..|+.+.+..+...  +...+....+|+.+.+... ++......|..+..
T Consensus       179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~  254 (394)
T 4fs7_A          179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTD  254 (394)
T ss_dssp             TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSS
T ss_pred             ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceeccccccccccc
Confidence            34555566666666544 33333445666666666666544322  1222333455666665432 23333445666666


Q ss_pred             CCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304          260 LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN  339 (540)
Q Consensus       260 L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  339 (540)
                      ++.+.+..+...--...+..+..++.+....+.+.   ...+..+.+|+.+.+..+ ++.....+|.+|.+|+.+++..+
T Consensus       255 l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~  330 (394)
T 4fs7_A          255 LESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL  330 (394)
T ss_dssp             CCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ceeEEcCCCcceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence            66666655432222334555666666655554322   234556666666666543 44444566677777777777543


Q ss_pred             cCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304          340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN  387 (540)
Q Consensus       340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  387 (540)
                       ++..-..+|.+|.+|+.+++..+ ++..-..+|.++++|+.+++..+
T Consensus       331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence             44344566777777777777655 55444556777777777776543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=9.7e-16  Score=148.08  Aligned_cols=245  Identities=15%  Similarity=0.123  Sum_probs=143.0

Q ss_pred             CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcce--ecCChhccCCCCCCeeeccCCccccccCccccC----
Q 045304          135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS--GGIPEEISNLTNLIIIYLGGNKLNGSIPITLSK----  208 (540)
Q Consensus       135 l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~----  208 (540)
                      +.+++.|.++++--...+  ..+....++|++|+|++|++.  ...+..+   +.+..+.+..+.+   .+..|.+    
T Consensus        24 ~~~l~~L~l~g~i~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEECHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETT
T ss_pred             hCceeEEEEeccccHHHH--HHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccc
Confidence            456788888764211100  122231267888888888876  2222212   2234444444422   2344555    


Q ss_pred             ----CCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCC----CCCCC-ccccC
Q 045304          209 ----LQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNE----LTSIP-LTFWN  279 (540)
Q Consensus       209 ----l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~ip-~~~~~  279 (540)
                          +++|+.+++.+ .++..-+.+|..+++|+.+++..|.+....+.+|..+.++..+.+..+.    ...+. ..|..
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                88888888887 7775666678888888888888888877777788877777766665521    12221 12333


Q ss_pred             CCCCc-EEECCCCc--------------------ccCCC----cccc-ccccCcceEEcccceeeecCccccccCCCCcE
Q 045304          280 LKDIL-YLNFSSNF--------------------LTGPL----PLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQY  333 (540)
Q Consensus       280 l~~L~-~L~L~~n~--------------------l~~~~----~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  333 (540)
                      +..|+ .+.+....                    +.+.+    ...+ ..+++|+.+++++|+++...+.+|..|++|+.
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            33333 22221110                    00000    0000 12567777777777777666666777777777


Q ss_pred             EeCcCccCcccCCcccCCCCCCC-EEECCCCcCccccCccccCCCCCCeEEcccCcce
Q 045304          334 LFVGYNRLQGSIPYSIGDLISLK-SLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLA  390 (540)
Q Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~  390 (540)
                      +++.+| ++..-+.+|.++.+|+ .+++.+ .++...+.+|.++++|+.++++.|.+.
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            777776 5555566677777777 777766 566555667777777777777766665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=4.4e-16  Score=131.82  Aligned_cols=124  Identities=19%  Similarity=0.192  Sum_probs=53.3

Q ss_pred             CCeeeeeCcccc-CcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECC
Q 045304          212 LQGLSLADNKLE-GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFS  289 (540)
Q Consensus       212 L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~  289 (540)
                      |+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++ +|..+..+++|++|+++
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            333444433333 33333333444444444444444332  333444444444444444444 33333334444444444


Q ss_pred             CCcccCC-CccccccccCcceEEcccceeeecCc---cccccCCCCcEEeCc
Q 045304          290 SNFLTGP-LPLEIENLKVLVGIDFSVNNFSGVIP---TTIGSLKGLQYLFVG  337 (540)
Q Consensus       290 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  337 (540)
                      +|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            4444431 22344444555555555555544333   345555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=3.5e-15  Score=131.93  Aligned_cols=128  Identities=21%  Similarity=0.277  Sum_probs=98.5

Q ss_pred             CeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccce
Q 045304          237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNN  316 (540)
Q Consensus       237 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  316 (540)
                      +.+++++|.++ .+|..+.  ++|+.|++++|.++.+|..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            45666666665 3444332  46777777777777777777777777888888888777777778888888888888888


Q ss_pred             eeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304          317 FSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       317 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                      +++..+..|..+++|+.|+|++|.++...+..+..+++|+.|++++|.+..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            887777788888888899999988886666678888899999999998864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=5.7e-14  Score=138.55  Aligned_cols=267  Identities=12%  Similarity=0.113  Sum_probs=204.7

Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCC
Q 045304           56 VRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNC  135 (540)
Q Consensus        56 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l  135 (540)
                      ..+..++.+.+.++ ++..-...|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+....     ...|.+|
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~-----~~aF~~c  179 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLK-----EDIFYYC  179 (401)
T ss_dssp             EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEEC-----SSTTTTC
T ss_pred             EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEeh-----HHHhhCc
Confidence            44678888888754 555556677775 7999999876 666667788884 799999986 455442     2468899


Q ss_pred             CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304          136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL  215 (540)
Q Consensus       136 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  215 (540)
                      ++|+.+++..|.+..... ..+. . .+|+.+.+..+ +...-..+|..+++|+.+.+..+ ++.....+|.+ .+|+.+
T Consensus       180 ~~L~~l~l~~n~l~~I~~-~aF~-~-~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPA-STFV-Y-AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV  253 (401)
T ss_dssp             TTCCEEECTTSCCSEECT-TTTT-T-CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred             ccCCeeecCCCcceEech-hhEe-e-cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence            999999999988876655 4444 3 68999999744 66566778899999999999875 55455567777 789999


Q ss_pred             eeeCccccCcCCccccCCCCCCeEEcCCCCCc-----cccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECC
Q 045304          216 SLADNKLEGSIPNNICRLTELYELDLGSNKFS-----RSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFS  289 (540)
Q Consensus       216 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~  289 (540)
                      .+. +.+...-..+|..+++|+.+++.+|.+.     ...+.+|..|++|+.+++. +.++.++. +|.++++|+.+.|.
T Consensus       254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEEC
T ss_pred             EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEEC
Confidence            995 4555555678999999999999887664     4566789999999999998 45777665 67888999999996


Q ss_pred             CCcccCCCccccccccCcceEEcccceeeecCccccccCC-CCcEEeCcCccCc
Q 045304          290 SNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLK-GLQYLFVGYNRLQ  342 (540)
Q Consensus       290 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~  342 (540)
                      .+ +...-..+|.++ +|+.+++++|.+....+..|..++ .++.|++..+.+.
T Consensus       332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            65 555556788888 999999999988766677777774 7888988877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.60  E-value=1.6e-13  Score=135.90  Aligned_cols=335  Identities=13%  Similarity=0.094  Sum_probs=221.6

Q ss_pred             cccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCc
Q 045304           22 LVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPD  101 (540)
Q Consensus        22 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  101 (540)
                      ++..-..+|.+|.+|+.+.+..+ ++ .|+..+|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ +......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            33333457778888888888644 55 677777788888888888654 55455566777888887776654 3334455


Q ss_pred             cccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChh
Q 045304          102 TFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE  181 (540)
Q Consensus       102 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~  181 (540)
                      +|.++..++..........+       ...|.++++|+.+.+..+..  .++...+..+ .+|+.+.+..+ +...-...
T Consensus       135 aF~~~~~~~~~~~~~~~~i~-------~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c-~~L~~i~l~~~-~~~I~~~~  203 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGVTVIG-------DEAFATCESLEYVSLPDSME--TLHNGLFSGC-GKLKSIKLPRN-LKIIRDYC  203 (394)
T ss_dssp             TTTTCCCSEEECCTTCCEEC-------TTTTTTCTTCCEEECCTTCC--EECTTTTTTC-TTCCBCCCCTT-CCEECTTT
T ss_pred             eeecccccccccCccccccc-------hhhhcccCCCcEEecCCccc--eeccccccCC-CCceEEEcCCC-ceEeCchh
Confidence            66666544433332222111       23578888899988876532  2332445555 67888887655 44344566


Q ss_pred             ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304          182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR  261 (540)
Q Consensus       182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  261 (540)
                      +..+..|+.+.+..+...  +.........|+.+.+... +...-...|..+..|+.+.+..+.. ......|..+..++
T Consensus       204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~  279 (394)
T 4fs7_A          204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLK  279 (394)
T ss_dssp             TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCC
T ss_pred             hccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccc
Confidence            778888888887766433  2333445568888888643 2323345677888888888876643 35566788888888


Q ss_pred             EeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304          262 TLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL  341 (540)
Q Consensus       262 ~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  341 (540)
                      .+.+..+.+..  ..+..+.+|+.+.+..+ +...-..+|.++.+|+.+++..+ ++.....+|.+|.+|+.+++..+ +
T Consensus       280 ~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l  354 (394)
T 4fs7_A          280 KVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L  354 (394)
T ss_dssp             EEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred             eeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c
Confidence            88776554321  25667888888888765 44344567888889999888754 66556778888899999998876 6


Q ss_pred             cccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeE
Q 045304          342 QGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDL  382 (540)
Q Consensus       342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l  382 (540)
                      +..-..+|.+|.+|+.+++..+ +. .+..+|.++++|+.+
T Consensus       355 ~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          355 RKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             cEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            6556678888999999988754 32 334567777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=2e-14  Score=125.42  Aligned_cols=133  Identities=23%  Similarity=0.246  Sum_probs=104.2

Q ss_pred             CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304           11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL   90 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L   90 (540)
                      +.+.+++++++++ .+|..+  .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            4578888888887 455443  368899999999887 566666678889999999999888666666788889999999


Q ss_pred             cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccC
Q 045304           91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGIL  152 (540)
Q Consensus        91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  152 (540)
                      ++|.+++..+..|..+++|++|++++|.+++.+     +..+..+++|++|++++|.+.+..
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVP-----DGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-----TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeC-----HHHhcCCcccCEEEecCCCeeccC
Confidence            999888777777888888999999888887652     233567888888888888877654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=5.5e-15  Score=128.80  Aligned_cols=130  Identities=19%  Similarity=0.122  Sum_probs=74.5

Q ss_pred             CCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeC
Q 045304          257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV  336 (540)
Q Consensus       257 l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  336 (540)
                      +++|+.|++++|.++.+|......++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            3444444444444444432222222555555555555433  34555666666666666666544444566667777777


Q ss_pred             cCccCcccCCc--ccCCCCCCCEEECCCCcCccccCcc----ccCCCCCCeEEcccCcce
Q 045304          337 GYNRLQGSIPY--SIGDLISLKSLNLSNNNLSGTIPVS----LEKLSYLEDLNLSFNKLA  390 (540)
Q Consensus       337 ~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~l~l~~n~l~  390 (540)
                      ++|.++ .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.+|+++|...
T Consensus        96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777665 3443  5666777777777777776 34443    667777777777777653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=3e-17  Score=146.27  Aligned_cols=123  Identities=20%  Similarity=0.295  Sum_probs=54.9

Q ss_pred             CCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeC
Q 045304          257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV  336 (540)
Q Consensus       257 l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  336 (540)
                      +++|++|++++|.++++| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus        47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence            333333333333333333 3333334444444444433 233333334444455555554443 22 3444455555555


Q ss_pred             cCccCcccCC-cccCCCCCCCEEECCCCcCccccCcc----------ccCCCCCCeEE
Q 045304          337 GYNRLQGSIP-YSIGDLISLKSLNLSNNNLSGTIPVS----------LEKLSYLEDLN  383 (540)
Q Consensus       337 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~~~~L~~l~  383 (540)
                      ++|.+++..+ ..+..+++|++|++++|.+++.+|..          +..+++|+.||
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            5555543211 24455555555555555555443331          45566666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=4e-17  Score=145.44  Aligned_cols=155  Identities=24%  Similarity=0.269  Sum_probs=129.2

Q ss_pred             ccCCCCCCeeeeeCccccCcCCc------cccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccC
Q 045304          206 LSKLQKLQGLSLADNKLEGSIPN------NICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWN  279 (540)
Q Consensus       206 l~~l~~L~~L~l~~n~~~~~~p~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~  279 (540)
                      +.....++.++++.+.+.+.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++.+|..+..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~   91 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV   91 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence            45567888888888888888776      88899999999999999886 56 788899999999999999999887777


Q ss_pred             CCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCc-cccccCCCCcEEeCcCccCcccCCcc----------
Q 045304          280 LKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP-TTIGSLKGLQYLFVGYNRLQGSIPYS----------  348 (540)
Q Consensus       280 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----------  348 (540)
                      +++|++|++++|.+.+ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++.+|..          
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            8899999999999986 44 68888999999999999986433 56888999999999999998776543          


Q ss_pred             cCCCCCCCEEECCCCcCc
Q 045304          349 IGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       349 ~~~l~~L~~L~l~~n~l~  366 (540)
                      +..+++|+.||  +|.++
T Consensus       170 ~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          170 VKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHCSSCSEEC--CGGGT
T ss_pred             HHhCCCcEEEC--CcccC
Confidence            67888999887  56655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.4e-14  Score=126.27  Aligned_cols=110  Identities=23%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304          182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR  261 (540)
Q Consensus       182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  261 (540)
                      +.++++|+.|++++|.++. ++......++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3445566666666666552 333222223566666666665543  3455556666666666666544333345555666


Q ss_pred             EeeCCCCCCCCCCc--cccCCCCCcEEECCCCccc
Q 045304          262 TLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       262 ~L~l~~n~l~~ip~--~~~~l~~L~~L~L~~n~l~  294 (540)
                      +|++++|.++.+|.  .+..+++|+.|++++|.+.
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence            66666666555554  4445555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=2.4e-13  Score=117.37  Aligned_cols=106  Identities=22%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             CCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304          260 LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN  339 (540)
Q Consensus       260 L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  339 (540)
                      .+.+++++|.++.+|..+.  ++|++|+|++|.+.+..|..+..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4566777777766665442  55666666666666555656666666666666666666555555556666666666666


Q ss_pred             cCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304          340 RLQGSIPYSIGDLISLKSLNLSNNNLSG  367 (540)
Q Consensus       340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~  367 (540)
                      ++++..+..+..+++|+.|++++|.++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            6665545555666666666666665553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.46  E-value=1.9e-11  Score=121.03  Aligned_cols=328  Identities=16%  Similarity=0.140  Sum_probs=149.6

Q ss_pred             CccccCCC-CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCc---ccccCCccccCCCCCCEEEccCCcccccCCcc
Q 045304           27 PTKVFNVS-TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN---FCGTIPHFIFNASKLSLLELGDNSFSGFIPDT  102 (540)
Q Consensus        27 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~  102 (540)
                      ..+|.++. .|+.+.+..+ ++ .|...+|.++.+|+.+.+..+.   ++..-...|.++.+|+.+.+..+ +..+....
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             HhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence            34565553 4666666543 44 5666666666666666665542   44333455666666666665543 33344455


Q ss_pred             ccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhc
Q 045304          103 FGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI  182 (540)
Q Consensus       103 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l  182 (540)
                      |..+.+|+.+.+..+. ...     -...+..+..|+.+.+..+ +... ....+..  ..|+.+.+..+.. ..-...+
T Consensus       133 F~~c~~L~~i~lp~~~-~~I-----~~~~F~~c~~L~~i~~~~~-~~~I-~~~aF~~--~~l~~i~ip~~~~-~i~~~af  201 (394)
T 4gt6_A          133 FHHCEELDTVTIPEGV-TSV-----ADGMFSYCYSLHTVTLPDS-VTAI-EERAFTG--TALTQIHIPAKVT-RIGTNAF  201 (394)
T ss_dssp             TTTCTTCCEEECCTTC-CEE-----CTTTTTTCTTCCEEECCTT-CCEE-CTTTTTT--CCCSEEEECTTCC-EECTTTT
T ss_pred             hhhhccccccccccee-eee-----cccceecccccccccccce-eeEe-ccccccc--cceeEEEECCccc-ccccchh
Confidence            6666677776665432 221     1123556666666666543 2111 1112211  3455555433221 1223345


Q ss_pred             cCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCE
Q 045304          183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRT  262 (540)
Q Consensus       183 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  262 (540)
                      ..+.+++......+.........+....... ..+          ..+.....+..+.+. +.+...-..+|..+.+|+.
T Consensus       202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~  269 (394)
T 4gt6_A          202 SECFALSTITSDSESYPAIDNVLYEKSANGD-YAL----------IRYPSQREDPAFKIP-NGVARIETHAFDSCAYLAS  269 (394)
T ss_dssp             TTCTTCCEEEECCSSSCBSSSCEEEECTTSC-EEE----------EECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCE
T ss_pred             hhccccceecccccccccccceeeccccccc-ccc----------cccccccccceEEcC-CcceEcccceeeecccccE
Confidence            5555565555444332211000000000000 000          001111222222222 1222233344555555555


Q ss_pred             eeCCCCCCCCC-CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304          263 LSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL  341 (540)
Q Consensus       263 L~l~~n~l~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  341 (540)
                      +.+..+. ..+ ..+|.+++.|+.+.+.. .+...-...|.++.+|+.+++..+ ++.....+|..|.+|+.+.+..+ +
T Consensus       270 i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v  345 (394)
T 4gt6_A          270 VKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V  345 (394)
T ss_dssp             EECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C
T ss_pred             Eeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c
Confidence            5554332 122 22444555555555542 222223344555666666666543 44344556667777777777543 4


Q ss_pred             cccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304          342 QGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN  387 (540)
Q Consensus       342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  387 (540)
                      +..-..+|.+|.+|+.+++.++....   ..+..+..|+.+.+..+
T Consensus       346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          346 TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            43445667777777777777664331   34455666666666544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=3.1e-13  Score=116.73  Aligned_cols=110  Identities=19%  Similarity=0.158  Sum_probs=97.9

Q ss_pred             CCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECC
Q 045304          282 DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLS  361 (540)
Q Consensus       282 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  361 (540)
                      ..+.+++++|.+.. +|..+.  +.|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35789999999985 665553  789999999999999889999999999999999999998877788999999999999


Q ss_pred             CCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          362 NNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       362 ~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      +|++++..+..|..+++|+.|++++|++.+..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998777789999999999999999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=6e-13  Score=115.26  Aligned_cols=104  Identities=22%  Similarity=0.207  Sum_probs=64.7

Q ss_pred             CEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304          261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR  340 (540)
Q Consensus       261 ~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  340 (540)
                      +.+++++|.++.+|..+.  ++|++|+|++|++.+..|..+..+++|+.|+|++|++++..+..|..+++|++|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            566666666666665443  566666666666666556666666666666666666665444455666666666666666


Q ss_pred             CcccCCcccCCCCCCCEEECCCCcCc
Q 045304          341 LQGSIPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       341 l~~~~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      +++..+..+..+++|+.|++++|.+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            66544444666666666666666665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.42  E-value=1.6e-11  Score=121.55  Aligned_cols=329  Identities=12%  Similarity=0.143  Sum_probs=174.5

Q ss_pred             cccCCCC-CCCEEeccCcccccCCCccccCCCCCCEEEcccCc---CccccchhhhcCCCCCCEEEccCCcccccCCccc
Q 045304            4 HEIGNLR-NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNS---LSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFI   79 (540)
Q Consensus         4 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l   79 (540)
                      .+|.+++ .|+.+.+..+ ++..-..+|.+|++|+.+.+..|.   ++ .+...+|..+.+|+.+.+..+ ++..-...|
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhh
Confidence            3588885 5999999864 775667899999999999998764   55 788888899999999988765 554556778


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccc
Q 045304           80 FNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGN  159 (540)
Q Consensus        80 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  159 (540)
                      .++.+|+.+.+..+ +..+....|..+..|+.+.+..+ ++....     ..| ....|+.+.+..+... . ....+..
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~-----~aF-~~~~l~~i~ip~~~~~-i-~~~af~~  203 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEE-----RAF-TGTALTQIHIPAKVTR-I-GTNAFSE  203 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECT-----TTT-TTCCCSEEEECTTCCE-E-CTTTTTT
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEecc-----ccc-cccceeEEEECCcccc-c-ccchhhh
Confidence            89999999999754 34456678899999999999765 333211     123 3467888887654321 1 1122333


Q ss_pred             ccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeE
Q 045304          160 LSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL  239 (540)
Q Consensus       160 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  239 (540)
                      + ..+............ +...+.          ..+.........+.....+..+.+.. .+...-..+|..+..|+.+
T Consensus       204 c-~~l~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i  270 (394)
T 4gt6_A          204 C-FALSTITSDSESYPA-IDNVLY----------EKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASV  270 (394)
T ss_dssp             C-TTCCEEEECCSSSCB-SSSCEE----------EECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEE
T ss_pred             c-cccceeccccccccc-ccceee----------cccccccccccccccccccceEEcCC-cceEcccceeeecccccEE
Confidence            3 445555443332211 000000          00000000000011112222222221 1221222344444555555


Q ss_pred             EcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee
Q 045304          240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS  318 (540)
Q Consensus       240 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  318 (540)
                      .+..+.. .....+|.++++|+.+.+. +.++.++. +|.++.+|+.+.+..+ +...-..+|.++.+|+.+.+..+ ++
T Consensus       271 ~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~  346 (394)
T 4gt6_A          271 KMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT  346 (394)
T ss_dssp             ECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC
T ss_pred             ecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC
Confidence            4443221 2333445555555555553 23344333 3444555555555433 22223345556666666666443 44


Q ss_pred             ecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcC
Q 045304          319 GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNL  365 (540)
Q Consensus       319 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  365 (540)
                      .....+|.+|.+|+.+++.++....   ..+..+..|+.+.+..+.+
T Consensus       347 ~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          347 KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            3445566777777777776664331   3455566666666655543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=7.7e-13  Score=114.57  Aligned_cols=108  Identities=21%  Similarity=0.230  Sum_probs=94.8

Q ss_pred             CcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCC
Q 045304          283 ILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSN  362 (540)
Q Consensus       283 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  362 (540)
                      -+.+++++|.+. .+|..+.  ++|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368999999986 5666554  7899999999999988899999999999999999999977677788999999999999


Q ss_pred             CcCccccCccccCCCCCCeEEcccCcceeeC
Q 045304          363 NNLSGTIPVSLEKLSYLEDLNLSFNKLAGEI  393 (540)
Q Consensus       363 n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~  393 (540)
                      |++++..+..|..+++|+.|++++|++.+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            9999776667999999999999999987544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=6.4e-14  Score=136.86  Aligned_cols=146  Identities=14%  Similarity=0.091  Sum_probs=69.5

Q ss_pred             CCCCEEEccCCcccccCCcccc-CCCCCCEEEccCCcccccCCccc-----cCCCCCCEEECcCccccCCCCCccccccC
Q 045304           59 PNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTF-----GNLRNLNKVTLYNNYLTSSTSDLNFLSSL  132 (540)
Q Consensus        59 ~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~~l  132 (540)
                      ++|+.|+|++|.++......+. .+.+|++|+|++|.++......+     ...++|++|+|++|.++..... .+...+
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA-VLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH-HHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH-HHHHHH
Confidence            4555555555555432222221 23445555555555543322222     1345555555555555432110 022333


Q ss_pred             CCCCCCCEEECcCCCCCccCC---ccccccccccCcEEEccCCccee----cCChhccCCCCCCeeeccCCccccccCcc
Q 045304          133 SNCKTLTYIDLSDNPLDGILP---GTSVGNLSHSLEYFYMPNCNVSG----GIPEEISNLTNLIIIYLGGNKLNGSIPIT  205 (540)
Q Consensus       133 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  205 (540)
                      ..+++|++|+|++|.+...-.   ...+... ++|++|++++|.+++    .++..+...++|++|++++|.++......
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~  258 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV  258 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence            445556666666665543110   0122222 356666666666543    23344556677888888888776544333


Q ss_pred             c
Q 045304          206 L  206 (540)
Q Consensus       206 l  206 (540)
                      +
T Consensus       259 L  259 (372)
T 3un9_A          259 L  259 (372)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=2.3e-13  Score=132.86  Aligned_cols=110  Identities=17%  Similarity=0.165  Sum_probs=57.1

Q ss_pred             CCCcEEECCCCcccCCCcccc-----ccccCcceEEcccceeeec----CccccccCCCCcEEeCcCccCccc----CCc
Q 045304          281 KDILYLNFSSNFLTGPLPLEI-----ENLKVLVGIDFSVNNFSGV----IPTTIGSLKGLQYLFVGYNRLQGS----IPY  347 (540)
Q Consensus       281 ~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~  347 (540)
                      ++|+.|+|++|.++......+     ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+++.    +..
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            344555555555443222222     1234556666666655432    223334556666666666666532    234


Q ss_pred             ccCCCCCCCEEECCCCcCccc----cCccccCCCCCCeEEcccCcce
Q 045304          348 SIGDLISLKSLNLSNNNLSGT----IPVSLEKLSYLEDLNLSFNKLA  390 (540)
Q Consensus       348 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~  390 (540)
                      .+...++|+.|+|++|.++..    +...+...++|++|++++|+++
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            445555666777776666542    2233344566777777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.24  E-value=1.4e-09  Score=106.98  Aligned_cols=143  Identities=15%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             ccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcc
Q 045304          230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV  308 (540)
Q Consensus       230 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  308 (540)
                      +....+|+.+.+..+ +......+|..+..|+.+.+..+ ++.+.. ++.++.+|+.+.+..+ +.......|..+.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            334444444444332 22233344445555555555433 333322 3444555555555432 2222233455666666


Q ss_pred             eEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCC
Q 045304          309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLS  377 (540)
Q Consensus       309 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  377 (540)
                      .+.+.++.++.....+|.+|.+|+.+.|..+ ++..-..+|.+|.+|+.+.+..+ ++..-..+|.++.
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            6666666565555566777777777777543 44344566777777777777543 4433344555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=2.9e-11  Score=117.65  Aligned_cols=103  Identities=19%  Similarity=0.176  Sum_probs=60.7

Q ss_pred             EeeCCCC-CCCCCCccccCCCCCcEEECCC-CcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304          262 TLSLGSN-ELTSIPLTFWNLKDILYLNFSS-NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN  339 (540)
Q Consensus       262 ~L~l~~n-~l~~ip~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  339 (540)
                      .++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            3455554 5555555 55555666666654 6665555555666666666666666666666666666666666666666


Q ss_pred             cCcccCCcccCCCCCCCEEECCCCcCc
Q 045304          340 RLQGSIPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      +|++..+..+..++ |+.|+|.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            66644444444443 666666666655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=3.2e-11  Score=117.27  Aligned_cols=108  Identities=22%  Similarity=0.148  Sum_probs=96.2

Q ss_pred             cEEECCCC-cccCCCccccccccCcceEEccc-ceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECC
Q 045304          284 LYLNFSSN-FLTGPLPLEIENLKVLVGIDFSV-NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLS  361 (540)
Q Consensus       284 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  361 (540)
                      ..++++++ .+. .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688888 787 4777 99999999999996 99999888999999999999999999999999999999999999999


Q ss_pred             CCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          362 NNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       362 ~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      +|++++..+..+..++ |+.|++.+|++.+...
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            9999977777776666 9999999999987543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.16  E-value=7.9e-09  Score=101.63  Aligned_cols=153  Identities=15%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             ccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC-ccccCCCCCcEEECCCCcccCCCccccccccCcc
Q 045304          230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV  308 (540)
Q Consensus       230 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  308 (540)
                      +.....+..+.+.... .......+..+.+|+.+.+..+ +..+. ..+..+..|+.+.+..+ +...-...+..+..|+
T Consensus       190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence            3344445555544322 2234455666777777777543 33333 35667777777777655 3333445666777777


Q ss_pred             eEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304          309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN  387 (540)
Q Consensus       309 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  387 (540)
                      .+.+..+ +.......|..|.+|+.+.+..+.++..-..+|.++.+|+.+++..+ ++..-..+|.++++|+.+.+..+
T Consensus       267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            7777543 44444566777788888888777776555677777888888887644 55444566777777877776543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=1.2e-10  Score=112.60  Aligned_cols=83  Identities=18%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             ccCcceEEcccceeeecCcccc---ccCCCCcEEeCcCccCccc----CCcccCCCCCCCEEECCCCcCccccCccccC-
Q 045304          304 LKVLVGIDFSVNNFSGVIPTTI---GSLKGLQYLFVGYNRLQGS----IPYSIGDLISLKSLNLSNNNLSGTIPVSLEK-  375 (540)
Q Consensus       304 l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-  375 (540)
                      +++|+.|+|.+|.+.+..+..+   ..+++|+.|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            3455555555555443222222   1345566666666666542    2222334566666666666665433222322 


Q ss_pred             CCCCCeEEcccCc
Q 045304          376 LSYLEDLNLSFNK  388 (540)
Q Consensus       376 ~~~L~~l~l~~n~  388 (540)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            1  2445666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.4e-09  Score=105.11  Aligned_cols=102  Identities=19%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             CCCCEEeccCccccc-C-------CCccccCCCCCCEEEcccCcCc---------cccchhhhcCCCCCCEEEccCCccc
Q 045304           10 RNLELLVLSHNKLVG-V-------IPTKVFNVSTLKVFEVSNNSLS---------GSLSSIAGVRLPNLEVLRMRSNNFC   72 (540)
Q Consensus        10 ~~L~~L~L~~n~l~~-~-------~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~~l~~L~~L~L~~n~l~   72 (540)
                      ..++.|.+....+.+ .       +..+...+++|+.|.+......         +.+...+ ..+|+|+.|+|++|.-.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll-~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL-DAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH-HTCTTCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHH-hcCCCCcEEEEeCCCCc
Confidence            456677776555432 1       1223445678888887654321         1233333 56788888888776311


Q ss_pred             ccCCccccCCCCCCEEEccCCcccccCCcccc--CCCCCCEEECc
Q 045304           73 GTIPHFIFNASKLSLLELGDNSFSGFIPDTFG--NLRNLNKVTLY  115 (540)
Q Consensus        73 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~l~  115 (540)
                       .++. + .+++|++|++..|.+.......+.  .+++|++|+|+
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence             2232 3 367888888887776544333333  67888888775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=4.2e-08  Score=85.46  Aligned_cols=14  Identities=21%  Similarity=0.209  Sum_probs=6.6

Q ss_pred             cCCCCCCeEEcCCC
Q 045304          231 CRLTELYELDLGSN  244 (540)
Q Consensus       231 ~~l~~L~~L~l~~n  244 (540)
                      ...++|++|+|++|
T Consensus        33 ~~~~~L~~L~L~~n   46 (185)
T 1io0_A           33 NNDPDLEEVNLNNI   46 (185)
T ss_dssp             TTCTTCCEEECTTC
T ss_pred             hcCCCCCEEEecCC
Confidence            33444445555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=4.7e-08  Score=85.17  Aligned_cols=43  Identities=7%  Similarity=0.062  Sum_probs=21.5

Q ss_pred             cccCCCCCCeeeeeCc-cccCc----CCccccCCCCCCeEEcCCCCCc
Q 045304          205 TLSKLQKLQGLSLADN-KLEGS----IPNNICRLTELYELDLGSNKFS  247 (540)
Q Consensus       205 ~l~~l~~L~~L~l~~n-~~~~~----~p~~~~~l~~L~~L~l~~n~l~  247 (540)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            3445566666666666 55421    2223334455555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=4.4e-08  Score=89.67  Aligned_cols=85  Identities=19%  Similarity=0.295  Sum_probs=45.5

Q ss_pred             cCCCCCCEEEccCCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCC--CCCEEECcCccccCCCCCc--ccc
Q 045304           56 VRLPNLEVLRMRSNNFCG--TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLR--NLNKVTLYNNYLTSSTSDL--NFL  129 (540)
Q Consensus        56 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~--~~~  129 (540)
                      ..+++|+.|+|++|.+++  .++..+..+++|++|+|++|.+++.  ..+..+.  +|++|+|.+|.+.+.....  -..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            346666666666666665  3345555666666666666666643  2233233  6666776666665421000  011


Q ss_pred             ccCCCCCCCCEEE
Q 045304          130 SSLSNCKTLTYID  142 (540)
Q Consensus       130 ~~l~~l~~L~~L~  142 (540)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2245566666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=7.7e-08  Score=88.06  Aligned_cols=80  Identities=24%  Similarity=0.272  Sum_probs=46.3

Q ss_pred             cccCcceEEcccceeee--cCccccccCCCCcEEeCcCccCccc-CCcccCCCCCCCEEECCCCcCccccCc-------c
Q 045304          303 NLKVLVGIDFSVNNFSG--VIPTTIGSLKGLQYLFVGYNRLQGS-IPYSIGDLISLKSLNLSNNNLSGTIPV-------S  372 (540)
Q Consensus       303 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~  372 (540)
                      .+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|.+++. ....+..+ +|++|+|++|.+.+.+|.       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            44556666666666655  3345555666666777776666643 11222233 677777777777665542       2


Q ss_pred             ccCCCCCCeEE
Q 045304          373 LEKLSYLEDLN  383 (540)
Q Consensus       373 ~~~~~~L~~l~  383 (540)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45566776665

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=98.13  E-value=3e-07  Score=86.78  Aligned_cols=42  Identities=29%  Similarity=0.474  Sum_probs=32.3

Q ss_pred             CeeccCCCCcEEEEEec------CCCEEEEEEeccccCC-cchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +.||+|+||+||||++.      +++.||||++.....+ ..++|.+|+
T Consensus        32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~   80 (308)
T 4gt4_A           32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEA   80 (308)
T ss_dssp             EEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHH
T ss_pred             eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHH
Confidence            45999999999999983      4678999999755433 346799887

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=98.12  E-value=5.9e-07  Score=85.62  Aligned_cols=48  Identities=31%  Similarity=0.422  Sum_probs=37.3

Q ss_pred             cCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccCCcchhhhhhcC
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSGAFKSFDVECN  540 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~~~~~F~~E~~  540 (540)
                      +|.-.+.||+|+||+||+|++.      +|+.||||+++....+..++|.+|++
T Consensus        42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~   95 (329)
T 4aoj_A           42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAE   95 (329)
T ss_dssp             GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHH
T ss_pred             HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHH
Confidence            3444567999999999999974      47899999997655445677999873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.08  E-value=1.5e-06  Score=73.63  Aligned_cols=92  Identities=11%  Similarity=0.067  Sum_probs=60.1

Q ss_pred             CCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCc-ccccCCccccCC----CCCCEEEccCCc-ccccC
Q 045304           26 IPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN-FCGTIPHFIFNA----SKLSLLELGDNS-FSGFI   99 (540)
Q Consensus        26 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-~~~~~   99 (540)
                      +|.....-.+|+.||++++.++..--..+ ..+++|+.|+|++|. ++..--..+..+    ++|++|+|++|. ++..-
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            34433333568888888887764433334 578888888888874 554333445543    368888888875 66554


Q ss_pred             CccccCCCCCCEEECcCcc
Q 045304          100 PDTFGNLRNLNKVTLYNNY  118 (540)
Q Consensus       100 ~~~~~~l~~L~~L~l~~n~  118 (540)
                      -..+..+++|++|+++++.
T Consensus       132 l~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCT
T ss_pred             HHHHhcCCCCCEEECCCCC
Confidence            4556778888888888874

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=98.07  E-value=9.8e-07  Score=82.87  Aligned_cols=47  Identities=32%  Similarity=0.429  Sum_probs=34.7

Q ss_pred             CCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccCCcchhhhhhcC
Q 045304          494 FSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSGAFKSFDVECN  540 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~~~~~F~~E~~  540 (540)
                      |.-.+.||+|+||+||+|++.      +|+.||||+++....+..++|.+|++
T Consensus        15 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~   67 (299)
T 4asz_A           15 IVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAE   67 (299)
T ss_dssp             EEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHH
T ss_pred             eEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHH
Confidence            444567999999999999974      47889999997655455677999873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=2.8e-06  Score=71.97  Aligned_cols=86  Identities=12%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc-ccccCCccccCC----CCCCEEECcCcc-ccCCCCCcccccc
Q 045304           58 LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNS-FSGFIPDTFGNL----RNLNKVTLYNNY-LTSSTSDLNFLSS  131 (540)
Q Consensus        58 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~  131 (540)
                      -.+|+.||+++|.++..--..+..+++|++|+|++|. +++..-..+..+    ++|++|+|++|. ++..     -...
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-----Gl~~  134 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-----GIIA  134 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-----HHHH
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-----HHHH
Confidence            3568899999888776555667788889999998885 665444455554    468899998874 5543     2345


Q ss_pred             CCCCCCCCEEECcCCCC
Q 045304          132 LSNCKTLTYIDLSDNPL  148 (540)
Q Consensus       132 l~~l~~L~~L~l~~n~l  148 (540)
                      +..+++|+.|++++|.-
T Consensus       135 L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             GGGCTTCCEEEEESCTT
T ss_pred             HhcCCCCCEEECCCCCC
Confidence            66788899999988853

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=97.96  E-value=5.9e-06  Score=78.28  Aligned_cols=61  Identities=38%  Similarity=0.621  Sum_probs=49.3

Q ss_pred             ccccccHHHHHHHhccCCcc------CeeccCCCCcEEEEEecCCCEEEEEEecccc----CCcchhhhhhc
Q 045304          478 TWRRFSYLELCRATDRFSEN------NLIGRGGFGSVYKARIQDGMEVAVKVFHLHC----SGAFKSFDVEC  539 (540)
Q Consensus       478 ~~~~~~~~~l~~at~~f~~~------~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~----~~~~~~F~~E~  539 (540)
                      ....|++.++..+|++|++.      +.||+|+||.||+|+. +|+.||||++....    ....+.|.+|+
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~   81 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEI   81 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHH
Confidence            34678999999999999998      8999999999999998 58999999996432    12234576665

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=97.93  E-value=3.7e-06  Score=80.47  Aligned_cols=62  Identities=47%  Similarity=0.737  Sum_probs=50.2

Q ss_pred             ccccccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          478 TWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       478 ~~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ..+.+++.++..++++|...+.||+|+||.||+|...+|+.||||++..... .....|..|+
T Consensus        16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~   78 (326)
T 3uim_A           16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEV   78 (326)
T ss_dssp             CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHH
T ss_pred             ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHH
Confidence            4567899999999999999999999999999999998899999999975442 2234566665

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=97.91  E-value=6.1e-06  Score=78.78  Aligned_cols=62  Identities=24%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             ccccccHHHHHHHhcc----------CCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304          478 TWRRFSYLELCRATDR----------FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       478 ~~~~~~~~~l~~at~~----------f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ....++++++++|++.          |.....||+|+||.||+|+.. +|+.||||++.....+..+.|..|+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~   93 (321)
T 2c30_A           21 QSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEV   93 (321)
T ss_dssp             ----CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHH
T ss_pred             cCCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHH
Confidence            3457899999999975          555678999999999999986 7999999999765544455677765

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=97.90  E-value=1.9e-06  Score=82.33  Aligned_cols=59  Identities=37%  Similarity=0.594  Sum_probs=47.8

Q ss_pred             cccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .+++.++..++++|.....||+|+||.||+|+..+|+.||||++........++|.+|+
T Consensus        28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~   86 (321)
T 2qkw_B           28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEI   86 (321)
T ss_dssp             --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHH
T ss_pred             eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHH
Confidence            44555667788999999999999999999999988999999999765555556677775

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=97.66  E-value=2.7e-05  Score=74.26  Aligned_cols=46  Identities=28%  Similarity=0.242  Sum_probs=36.5

Q ss_pred             CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      |..-..||+|+||+||+|+- .+|+.||||++........+.|.+|+
T Consensus        76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei  122 (346)
T 4fih_A           76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEV  122 (346)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHH
T ss_pred             cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHH
Confidence            44556799999999999987 46999999999755544456688886

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=97.60  E-value=1.6e-05  Score=74.68  Aligned_cols=42  Identities=36%  Similarity=0.639  Sum_probs=32.1

Q ss_pred             ccCeeccCCCCcEEEEEecCCCEEEEEEecccc--CCcchhhhhhc
Q 045304          496 ENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      -.+.||+|+||+||+|++.+  .||||+++...  .+..++|.+|+
T Consensus        40 l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~   83 (307)
T 3omv_A           40 LSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEV   83 (307)
T ss_dssp             EEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHH
T ss_pred             EeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHH
Confidence            34679999999999999853  69999996433  22346788887

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=97.50  E-value=5.8e-05  Score=73.94  Aligned_cols=47  Identities=28%  Similarity=0.224  Sum_probs=37.4

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .|.....||+|+||+||+|+- .+|+.||||++........+.|.+|+
T Consensus       152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei  199 (423)
T 4fie_A          152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEV  199 (423)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHH
T ss_pred             hcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHH
Confidence            355667899999999999987 46899999999765544456677876

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=97.43  E-value=4.4e-05  Score=71.11  Aligned_cols=42  Identities=31%  Similarity=0.309  Sum_probs=32.3

Q ss_pred             CeeccCCCCcEEEEEec-CCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      ..||+|+||+||+|+.. .|+.||||++.....  ...+.|.+|+
T Consensus        32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~   76 (290)
T 3fpq_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEA   76 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHH
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHH
Confidence            46999999999999874 588999999965432  2245688886

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=97.35  E-value=5.4e-05  Score=72.25  Aligned_cols=47  Identities=19%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||+||+|+- .+|+.||||++......  ..+.|.+|+
T Consensus        25 ~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~   74 (350)
T 4b9d_A           25 KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREV   74 (350)
T ss_dssp             CEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHH
Confidence            455567899999999999986 56999999999654322  245688886

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=97.33  E-value=5.8e-05  Score=72.49  Aligned_cols=48  Identities=29%  Similarity=0.406  Sum_probs=35.7

Q ss_pred             ccCCccCeeccCCCCcEEEEEecC------CCEEEEEEeccccCC-cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||+||+|+..+      ++.||||++...... ..++|.+|+
T Consensus        64 ~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~  118 (353)
T 4ase_A           64 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSEL  118 (353)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             HHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHH
Confidence            345556789999999999998742      358999999765432 245688886

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=97.30  E-value=0.0001  Score=67.90  Aligned_cols=48  Identities=25%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc---CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||+||+|+- .+|+.||||++....   ....+.|.+|+
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei   64 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREI   64 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHH
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHH
Confidence            4566678899999999999986 569999999996433   12234577776

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=97.26  E-value=9.3e-05  Score=70.60  Aligned_cols=58  Identities=28%  Similarity=0.432  Sum_probs=33.4

Q ss_pred             ccHHHHHHHhccCCc---------cCeeccCCCCcEEEEEec----CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          482 FSYLELCRATDRFSE---------NNLIGRGGFGSVYKARIQ----DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       482 ~~~~~l~~at~~f~~---------~~~ig~G~~G~Vykg~l~----~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      .++.+...++..|..         .+.||+|+||.||+|+..    .+..||||++..... ...++|.+|+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~  101 (325)
T 3kul_A           30 HTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEA  101 (325)
T ss_dssp             -------------CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             ccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence            455566666655544         478999999999999983    455799999975432 2245577775

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=97.21  E-value=0.00016  Score=70.12  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=40.1

Q ss_pred             ccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          482 FSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      ..+.++...++.|.-.+.||+|+||.||+|.-.+|+.||||++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~   56 (362)
T 3pg1_A           12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFN   56 (362)
T ss_dssp             HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECE
T ss_pred             HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccc
Confidence            345678888999999999999999999999998899999999954

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=97.15  E-value=0.00014  Score=71.10  Aligned_cols=47  Identities=28%  Similarity=0.285  Sum_probs=35.0

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||+||+|+- .+|+.||||++.....  ...+.+.+|+
T Consensus        55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei  104 (398)
T 4b99_A           55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLREL  104 (398)
T ss_dssp             SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHH
Confidence            455567899999999999986 5699999999964332  2234566775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.14  E-value=0.00018  Score=62.01  Aligned_cols=16  Identities=25%  Similarity=0.372  Sum_probs=7.7

Q ss_pred             ccCCCCCCeEEcccCc
Q 045304          373 LEKLSYLEDLNLSFNK  388 (540)
Q Consensus       373 ~~~~~~L~~l~l~~n~  388 (540)
                      +..-+.|+.|+++.|.
T Consensus       153 L~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          153 IEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHCSSCCEEECCCCC
T ss_pred             HHhCCCcCeEeccCCC
Confidence            3344455555555443

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.13  E-value=0.00016  Score=71.47  Aligned_cols=50  Identities=16%  Similarity=0.152  Sum_probs=36.3

Q ss_pred             HhccCCccCeeccCCCCcEEEEE-ecCCCEEEEEEeccccCC---cchhhhhhc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSG---AFKSFDVEC  539 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~~~---~~~~F~~E~  539 (540)
                      .+..|...++||+|+||+||+|+ ..+|+.||||++......   ..+.|.+|+
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~  129 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEV  129 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHH
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHH
Confidence            44557777899999999999999 467999999999733221   234455554

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=97.12  E-value=0.00014  Score=68.16  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=36.2

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc---CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||+||+|+- .+|+.||||++....   ....+.|.+|+
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~   83 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRER   83 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHH
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHH
Confidence            4566778899999999999986 568999999996432   22335577775

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=97.11  E-value=0.00019  Score=67.23  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             cCCccCeeccCCCCcEEEEEe----cCCCEEEEEEecccc--CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l----~~g~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||+||+|+-    ..|+.||||++....  ......|..|+
T Consensus        25 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~   77 (304)
T 3ubd_A           25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMER   77 (304)
T ss_dssp             GEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------
T ss_pred             ccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHH
Confidence            455667899999999999975    246899999996433  12234566675

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=97.11  E-value=6.1e-05  Score=71.42  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=31.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~  527 (540)
                      ++|...+.||+|+||+||+|+.. +|+.||||++...
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~   93 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSP   93 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSS
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEeccc
Confidence            46888889999999999999986 7899999998643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.05  E-value=0.00027  Score=60.97  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=61.6

Q ss_pred             CCCCCCCCEeeCCCC-CCCC-----CCccccCCCCCcEEECCCCcccCC----CccccccccCcceEEcccceeeecC--
Q 045304          254 FSNLASLRTLSLGSN-ELTS-----IPLTFWNLKDILYLNFSSNFLTGP----LPLEIENLKVLVGIDFSVNNFSGVI--  321 (540)
Q Consensus       254 ~~~l~~L~~L~l~~n-~l~~-----ip~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~--  321 (540)
                      +..-+.|+.|+|++| .+..     +...+..-+.|+.|+|++|.+...    +...+..-+.|++|+|+.|.|...-  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344566777777764 6653     333455556777777777776532    2333444566777777777766432  


Q ss_pred             --ccccccCCCCcEEeCcCc---cCcc----cCCcccCCCCCCCEEECCCCcC
Q 045304          322 --PTTIGSLKGLQYLFVGYN---RLQG----SIPYSIGDLISLKSLNLSNNNL  365 (540)
Q Consensus       322 --~~~~~~l~~L~~L~l~~n---~l~~----~~~~~~~~l~~L~~L~l~~n~l  365 (540)
                        -..+..-+.|++|+|++|   .+..    .+...+..-++|+.|+++.|.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence              223334455677777644   2221    1223334445666666665543

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=97.03  E-value=0.0004  Score=65.00  Aligned_cols=46  Identities=22%  Similarity=0.353  Sum_probs=34.2

Q ss_pred             CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +....+||+|+||.||+|+- .+|+.||||++........+.|..|+
T Consensus        24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~   70 (295)
T 2clq_A           24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEI   70 (295)
T ss_dssp             TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHH
T ss_pred             CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHH
Confidence            45556899999999999996 56889999999765444445576665

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=96.98  E-value=0.0003  Score=70.52  Aligned_cols=48  Identities=25%  Similarity=0.402  Sum_probs=38.5

Q ss_pred             hccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .++|.-.+.||+|+||.||+|...+++.||||++..... ..++|..|+
T Consensus       187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~  234 (454)
T 1qcf_A          187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM-SVEAFLAEA  234 (454)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHH
T ss_pred             hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc-cHHHHHHHH
Confidence            345666788999999999999998889999999975432 356688775

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=96.97  E-value=0.00015  Score=71.99  Aligned_cols=44  Identities=23%  Similarity=0.424  Sum_probs=37.3

Q ss_pred             cHHHHHHHhccCCccCeeccCCCCcEEEEEecC-CCEEEEEEecc
Q 045304          483 SYLELCRATDRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHL  526 (540)
Q Consensus       483 ~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~  526 (540)
                      .+.+++.++++|...++||+|+||+||+|+..+ |+.||||++..
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~  109 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNK  109 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEH
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEH
Confidence            445666678899999999999999999999864 78999999964

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=96.96  E-value=0.00019  Score=69.92  Aligned_cols=48  Identities=25%  Similarity=0.472  Sum_probs=36.0

Q ss_pred             ccCCccCeeccCCCCcEEEEEec----CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ----DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~----~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ++|...+.||+|+||.||+|+..    +|..||||++..... ...++|.+|+
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~   97 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEA   97 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHH
Confidence            45677889999999999999985    577899999975432 2345677775

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=96.86  E-value=0.00042  Score=65.52  Aligned_cols=48  Identities=29%  Similarity=0.463  Sum_probs=34.6

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      +.|...+.||+|+||+||+|+..+|+.||||++.....  +..+.|.+|+
T Consensus        21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~   70 (311)
T 3niz_A           21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREI   70 (311)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHH
T ss_pred             hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHH
Confidence            34556688999999999999998899999999964332  1234466664

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=96.85  E-value=0.00034  Score=67.53  Aligned_cols=49  Identities=24%  Similarity=0.291  Sum_probs=35.3

Q ss_pred             HHhccCCccCeeccCCCCcEEEEEe----cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          489 RATDRFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       489 ~at~~f~~~~~ig~G~~G~Vykg~l----~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ...+.|.-.+.||+|+||+||+|+-    ..++.||||++....  ....+.+|+
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~   70 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAEL   70 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHH
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHH
Confidence            3456677788999999999999974    246789999996433  223455554

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=96.84  E-value=0.00064  Score=63.80  Aligned_cols=48  Identities=27%  Similarity=0.382  Sum_probs=36.8

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +.|...+.||+|+||+||+|.- .+|+.||||++........+.|..|+
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~   68 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEI   68 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHH
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHH
Confidence            4566678899999999999985 67899999999755444445566664

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=96.80  E-value=0.00047  Score=67.19  Aligned_cols=48  Identities=19%  Similarity=0.179  Sum_probs=36.3

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc---CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      +.|.-.+.||+|+||.||+|+. .+|+.||||++....   ....+.|.+|+
T Consensus        73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~  124 (377)
T 3byv_A           73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEV  124 (377)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHH
T ss_pred             ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHH
Confidence            4455568899999999999996 569999999996432   22345677775

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=96.80  E-value=0.00037  Score=67.79  Aligned_cols=45  Identities=24%  Similarity=0.402  Sum_probs=30.2

Q ss_pred             CccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          495 SENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       495 ~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ...++||+|+||.||+|+. .+|+.||||++........++|.+|+
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~  137 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEI  137 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHH
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHH
Confidence            4457899999999999987 56899999999765434455677775

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=96.80  E-value=0.00036  Score=66.80  Aligned_cols=35  Identities=29%  Similarity=0.584  Sum_probs=29.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~  527 (540)
                      ++|.-.+.||+|+||.||+|+. +|+.||||++...
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~   54 (336)
T 2vuw_A           20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIE   54 (336)
T ss_dssp             HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEES
T ss_pred             ccchheeeecccCceEEEEEEe-CCceEEEEEEecC
Confidence            3455568899999999999998 6899999999654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=96.79  E-value=0.00049  Score=63.99  Aligned_cols=47  Identities=21%  Similarity=0.278  Sum_probs=33.6

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||.||+|...++..||||++..... ..++|.+|+
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~   70 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEA   70 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHH
T ss_pred             HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHH
Confidence            34555678999999999999999888999999975432 235577665

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=96.77  E-value=0.0003  Score=69.35  Aligned_cols=44  Identities=27%  Similarity=0.431  Sum_probs=37.2

Q ss_pred             cHHHHHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          483 SYLELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       483 ~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      .+.+....+++|...++||+|+||.||+|+.. +|+.||||++..
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k   96 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNK   96 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeH
Confidence            44555566788999999999999999999984 689999999954

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=96.77  E-value=0.00056  Score=68.44  Aligned_cols=47  Identities=21%  Similarity=0.326  Sum_probs=37.2

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||.||+|...++..||||++..... ..++|..|+
T Consensus       184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~  230 (452)
T 1fmk_A          184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEA  230 (452)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHH
T ss_pred             hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHH
Confidence            34556678999999999999998888899999975442 345687775

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=96.75  E-value=0.00074  Score=63.90  Aligned_cols=42  Identities=19%  Similarity=0.159  Sum_probs=33.0

Q ss_pred             CeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++||+|+||.||+|+- .+|+.||||++........+.+.+|+
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~   61 (316)
T 2ac3_A           19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREV   61 (316)
T ss_dssp             CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHH
T ss_pred             ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHH
Confidence            6799999999999985 57899999999755444445566665

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=96.75  E-value=0.00039  Score=67.79  Aligned_cols=48  Identities=31%  Similarity=0.446  Sum_probs=36.1

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|+.. +|+.||||++..... ...++|..|+
T Consensus       114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~  163 (377)
T 3cbl_A          114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEA  163 (377)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHH
T ss_pred             HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            34555678999999999999995 689999999975432 2234577765

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=96.74  E-value=0.00056  Score=63.41  Aligned_cols=47  Identities=23%  Similarity=0.330  Sum_probs=36.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +.|.-...||+|+||.||+|...++..||||++..... ..+.|..|+
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~   59 (279)
T 1qpc_A           13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEA   59 (279)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHH
T ss_pred             HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHH
Confidence            34555678999999999999998888999999965432 345577665

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=96.74  E-value=0.00041  Score=67.99  Aligned_cols=47  Identities=23%  Similarity=0.299  Sum_probs=36.5

Q ss_pred             cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||.||+|...+|+.||||++.....  +..++|.+|+
T Consensus        57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei  105 (390)
T 2zmd_A           57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEI  105 (390)
T ss_dssp             EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHH
Confidence            3666788999999999999998899999999964432  2235577765

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=96.72  E-value=0.00066  Score=64.39  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=29.8

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      +.|.....||+|+||+||+|+- .+|+.||||+++..
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~   94 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE   94 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHH
Confidence            4455667899999999999986 56899999999643

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=96.70  E-value=0.00089  Score=62.36  Aligned_cols=37  Identities=38%  Similarity=0.574  Sum_probs=30.3

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC  528 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~  528 (540)
                      +.|.-.+.||+|+||.||+|+. .+|+.||||++....
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~   56 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGD   56 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCT
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccc
Confidence            4455668899999999999998 478999999996443

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=96.68  E-value=0.00074  Score=62.76  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             HHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304          488 CRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH  527 (540)
Q Consensus       488 ~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~  527 (540)
                      .....-+.-.+.||+|+||.||+|...+|+.||||++..+
T Consensus        86 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~  125 (282)
T 1zar_A           86 VRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVG  125 (282)
T ss_dssp             HHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC-
T ss_pred             HhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECC
Confidence            3333344455889999999999999987999999999643

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=96.68  E-value=0.00021  Score=69.08  Aligned_cols=55  Identities=25%  Similarity=0.322  Sum_probs=40.1

Q ss_pred             HHHHHHhccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccCC-cchhhhhhc
Q 045304          485 LELCRATDRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       485 ~~l~~at~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      .+.....++|.-...||+|+||.||+|+.      .+|+.||||++...... ..+.|.+|+
T Consensus        15 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   76 (359)
T 3vhe_A           15 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSEL   76 (359)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             ccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHH
Confidence            34444567788889999999999999974      34679999999754322 234577775

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=96.68  E-value=0.00048  Score=65.10  Aligned_cols=47  Identities=30%  Similarity=0.383  Sum_probs=35.7

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      ++|.-...||+|+||+||+|+. +|+.||||++......  ..++|.+|+
T Consensus        37 ~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~   85 (309)
T 3p86_A           37 CDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREV   85 (309)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHH
T ss_pred             hHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence            4566678899999999999998 5899999999654322  234577775

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=96.66  E-value=0.00026  Score=67.44  Aligned_cols=58  Identities=26%  Similarity=0.405  Sum_probs=41.5

Q ss_pred             cccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .+++.++....+.|.-.+.||+|+||.||+|+. .+|+.||||++..... ..++|..|+
T Consensus        13 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~   71 (326)
T 2x7f_A           13 EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEI   71 (326)
T ss_dssp             ---CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHH
T ss_pred             hccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHH
Confidence            344445556677788889999999999999998 4689999999964332 234566654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=96.64  E-value=0.00073  Score=69.16  Aligned_cols=47  Identities=21%  Similarity=0.326  Sum_probs=37.3

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||.||+|+..+++.||||++..... ..++|..|+
T Consensus       267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~  313 (535)
T 2h8h_A          267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEA  313 (535)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHH
T ss_pred             hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHH
Confidence            34555678999999999999998888899999975443 345687776

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=96.63  E-value=0.00063  Score=64.80  Aligned_cols=46  Identities=30%  Similarity=0.448  Sum_probs=35.6

Q ss_pred             CCccCeeccCCCCcEEEEEe-----cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARI-----QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-----~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      |.-.+.||+|+||.||+|++     .+|+.||||++........++|.+|+
T Consensus        43 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~   93 (326)
T 2w1i_A           43 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREI   93 (326)
T ss_dssp             EEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHH
T ss_pred             ceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHH
Confidence            44557899999999999985     36889999999765444455677775

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=96.58  E-value=0.00082  Score=67.18  Aligned_cols=45  Identities=29%  Similarity=0.427  Sum_probs=35.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|... |+.||||++....  ..++|.+|+
T Consensus       193 ~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~  237 (450)
T 1k9a_A          193 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEA  237 (450)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHH
T ss_pred             HHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHH
Confidence            45556688999999999999995 7899999997543  345677775

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=96.58  E-value=0.00081  Score=68.12  Aligned_cols=47  Identities=23%  Similarity=0.411  Sum_probs=36.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .+|.-.+.||+|+||.||+|+..+ |+.||||++..... ..++|.+|+
T Consensus       220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~  267 (495)
T 1opk_A          220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEA  267 (495)
T ss_dssp             GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHH
T ss_pred             HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHH
Confidence            345666889999999999999965 78999999975433 356687775

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=96.57  E-value=0.00063  Score=66.11  Aligned_cols=48  Identities=25%  Similarity=0.427  Sum_probs=34.6

Q ss_pred             ccCCccCeeccCCCCcEEEEEe--------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI--------QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l--------~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|+.        .++..||||++..... ...++|..|+
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~  137 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEM  137 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHH
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHH
Confidence            4555667899999999999986        2456899999965432 2234576665

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=96.57  E-value=0.00062  Score=67.01  Aligned_cols=42  Identities=26%  Similarity=0.400  Sum_probs=35.2

Q ss_pred             HHHHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          485 LELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       485 ~~l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      .+++...++|.-.++||+|+||+||+|+.. +|+.||||++..
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k  104 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSK  104 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEeh
Confidence            445556778988999999999999999985 588999999954

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.56  E-value=0.0043  Score=49.77  Aligned_cols=57  Identities=26%  Similarity=0.314  Sum_probs=34.5

Q ss_pred             EEeCcCccCc-ccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee
Q 045304          333 YLFVGYNRLQ-GSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       333 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~  391 (540)
                      .++.+++.++ ..+|..+  .++|+.|+|++|+|+...+..|..+++|+.|++++|++.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            4555555554 2344332  1356777777777776555666777777777776666544

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=96.56  E-value=0.0012  Score=61.96  Aligned_cols=48  Identities=29%  Similarity=0.478  Sum_probs=34.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +.|.-...||+|+||.||+|+.. +|+.||||++........+.|..|+
T Consensus        19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~   67 (302)
T 2j7t_A           19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEI   67 (302)
T ss_dssp             GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHH
T ss_pred             cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHH
Confidence            34555678999999999999985 4889999999765544456677665

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=96.56  E-value=0.00082  Score=63.86  Aligned_cols=35  Identities=34%  Similarity=0.520  Sum_probs=29.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~  527 (540)
                      ++|.-.+.||+|+||+||+|+.. |+.||||++...
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~   58 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ   58 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG
T ss_pred             hhchhhheecccCceEEEEEEEC-CCEEEEEEeecC
Confidence            45566788999999999999985 799999999643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=96.54  E-value=0.00066  Score=64.28  Aligned_cols=48  Identities=23%  Similarity=0.203  Sum_probs=34.6

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|+- .+|+.||||++........+.|.+|+
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~   77 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREA   77 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHH
Confidence            4566678899999999999997 67899999999654433345566665

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=96.54  E-value=0.00056  Score=65.19  Aligned_cols=47  Identities=30%  Similarity=0.410  Sum_probs=35.5

Q ss_pred             cCCccCeeccCCCCcEEEEEe-----cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-----QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-----~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||.||+|++     .+|+.||||++........+.|.+|+
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~   75 (327)
T 3lxl_A           24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREI   75 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHH
T ss_pred             hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHH
Confidence            345567899999999999995     46889999999755433345577765

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=96.52  E-value=0.00072  Score=65.56  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             HhccCCccCeeccCCCCcEEEEE------ecCCCEEEEEEeccc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKAR------IQDGMEVAVKVFHLH  527 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~------l~~g~~vAVK~l~~~  527 (540)
                      ..+.|...+.||+|+||+||+|+      ..+|+.||||++...
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~  106 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA  106 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC
Confidence            34567777899999999999994      566899999999643

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=96.50  E-value=0.00076  Score=63.78  Aligned_cols=50  Identities=22%  Similarity=0.276  Sum_probs=38.0

Q ss_pred             HhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      ..+.|.-...||+|+||.||+|...+|+.||||++......  ..+.|..|+
T Consensus        26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~   77 (313)
T 3cek_A           26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEI   77 (313)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHH
T ss_pred             ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHH
Confidence            44556677889999999999999988999999999643322  234566664

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=96.49  E-value=0.00093  Score=63.85  Aligned_cols=57  Identities=26%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             cHHHHHHHhccCCc---------cCeeccCCCCcEEEEEecC-----CCEEEEEEeccccCC-cchhhhhhc
Q 045304          483 SYLELCRATDRFSE---------NNLIGRGGFGSVYKARIQD-----GMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       483 ~~~~l~~at~~f~~---------~~~ig~G~~G~Vykg~l~~-----g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      ...+..+++..|..         .+.||+|+||.||+|+...     +..||||++...... ...+|..|+
T Consensus        26 ~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   97 (333)
T 1mqb_A           26 MGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEA   97 (333)
T ss_dssp             ------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             ccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHH
Confidence            34445555555554         5789999999999998743     236999999754322 234576665

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=96.47  E-value=0.0011  Score=63.85  Aligned_cols=48  Identities=31%  Similarity=0.442  Sum_probs=36.1

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCc---chhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGA---FKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~---~~~F~~E~  539 (540)
                      +.|...+.||+|+||.||+|+- .+|+.||||++.......   .++|.+|+
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~  105 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEV  105 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHH
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHH
Confidence            3467778899999999999986 578999999996543222   24566665

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=96.47  E-value=0.00083  Score=69.12  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=36.1

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||+||+|+- .+|+.||||++........+.+.+|+
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei  205 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEI  205 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHH
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHH
Confidence            3566667899999999999987 56899999999654433344566665

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=96.46  E-value=0.0014  Score=61.11  Aligned_cols=47  Identities=11%  Similarity=-0.055  Sum_probs=34.7

Q ss_pred             cCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCc---chhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGA---FKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~---~~~F~~E~  539 (540)
                      .|.-...||+|+||.||+|.-.. |+.||||++.......   .+.|..|+
T Consensus        32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~   82 (286)
T 3uqc_A           32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRT   82 (286)
T ss_dssp             TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHH
T ss_pred             cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHH
Confidence            35556789999999999999854 8999999997543221   24566664

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=96.45  E-value=0.0018  Score=62.74  Aligned_cols=42  Identities=24%  Similarity=0.383  Sum_probs=34.6

Q ss_pred             HHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304          487 LCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC  528 (540)
Q Consensus       487 l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~  528 (540)
                      .....+.|...+.||+|+||.||+|+.. +|+.||||++....
T Consensus        89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~  131 (365)
T 2y7j_A           89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTA  131 (365)
T ss_dssp             HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTS
T ss_pred             hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccc
Confidence            3445567888899999999999999985 69999999996543

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=96.45  E-value=0.00037  Score=67.45  Aligned_cols=48  Identities=25%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             cccccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          479 WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       479 ~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ...+++.+-....+.|.-.+.||+|+||.||+|+. .+|+.||||++..
T Consensus        22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   70 (360)
T 3llt_A           22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN   70 (360)
T ss_dssp             GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred             ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc
Confidence            34455555555667888889999999999999998 5688999999963

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=96.45  E-value=0.0016  Score=62.59  Aligned_cols=48  Identities=31%  Similarity=0.443  Sum_probs=35.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      +.|...+.||+|+||.||+|+. .+|+.||||++.....  .....|.+|+
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~   67 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREI   67 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHH
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHH
Confidence            4566678899999999999998 5789999999954432  2234455664

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=96.44  E-value=0.0011  Score=64.42  Aligned_cols=48  Identities=27%  Similarity=0.471  Sum_probs=34.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec------CCCEEEEEEecccc-CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||+||+|+..      +++.||||++.... .+...+|..|+
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~  125 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEA  125 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHH
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHH
Confidence            34556678999999999999963      45689999996433 22234576664

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=96.44  E-value=0.0013  Score=63.28  Aligned_cols=47  Identities=26%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .+.|.-...||+|+||.||+|+.. +|+.||||++....  ..+.|..|+
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~   99 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEI   99 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------C
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHH
Confidence            455777789999999999999985 47899999996532  234455554

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=96.42  E-value=0.00091  Score=64.09  Aligned_cols=50  Identities=30%  Similarity=0.391  Sum_probs=37.4

Q ss_pred             HhccCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccCC-cchhhhhhc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      ..++|.-.+.||+|+||.||+|+..      +|+.||||++...... ..++|.+|+
T Consensus        45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~  101 (343)
T 1luf_A           45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREA  101 (343)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHH
Confidence            4567777889999999999999985      3478999999754322 234577765

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=96.40  E-value=0.001  Score=63.35  Aligned_cols=49  Identities=27%  Similarity=0.340  Sum_probs=36.3

Q ss_pred             hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      .++|.-.+.||+|+||.||+|+- .+|+.||||++.....  ...+.+.+|+
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~   65 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREV   65 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHH
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHH
Confidence            34566678899999999999987 6799999999965432  1234466664

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=96.40  E-value=0.0014  Score=61.45  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      ++|.-.+.||+|+||.||+|+- .+|+.||||++...
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~   49 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKK   49 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehh
Confidence            3456668899999999999986 46889999999643

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=96.38  E-value=0.00084  Score=64.09  Aligned_cols=47  Identities=26%  Similarity=0.346  Sum_probs=35.2

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .|.-...||+|+||.||+|+. .+|+.||||++........+.|..|+
T Consensus        29 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~   76 (337)
T 3ll6_A           29 RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEV   76 (337)
T ss_dssp             EEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred             eEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHH
Confidence            455668899999999999996 46899999999554433344566554

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=96.38  E-value=0.001  Score=63.50  Aligned_cols=48  Identities=25%  Similarity=0.444  Sum_probs=33.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEe--------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI--------QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l--------~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|..        .+|+.||||++..... ...++|..|+
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   91 (334)
T 2pvf_A           35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEM   91 (334)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHH
Confidence            4556668899999999999987        3578899999965432 2234566664

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=96.37  E-value=0.0012  Score=63.59  Aligned_cols=35  Identities=29%  Similarity=0.548  Sum_probs=30.1

Q ss_pred             ccCCccCeeccCCCCcEEEEEe----cCCCEEEEEEecc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHL  526 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l----~~g~~vAVK~l~~  526 (540)
                      ++|...+.||+|+||.||+|+.    .+|+.||||++..
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~   92 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKK   92 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeH
Confidence            4567778999999999999998    4689999999964

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=96.32  E-value=0.0017  Score=60.32  Aligned_cols=48  Identities=25%  Similarity=0.383  Sum_probs=36.3

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      +.|.-.+.||+|+||.||+|.- .+|..||||++..... ...+.|.+|+
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~   71 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEI   71 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHH
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHH
Confidence            3466678899999999999987 4588999999965442 2345576665

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=96.32  E-value=0.0011  Score=63.61  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=30.2

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~  527 (540)
                      ++|.-...||+|+||.||+|.. +|+.||||++...
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~   65 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKS   65 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHH
T ss_pred             CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecc
Confidence            4566678899999999999999 8999999999643

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=96.32  E-value=0.0015  Score=62.27  Aligned_cols=36  Identities=31%  Similarity=0.624  Sum_probs=30.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEe----cCCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l----~~g~~vAVK~l~~~  527 (540)
                      ++|.-.+.||+|+||.||+|..    .+|+.||||++...
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~   56 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKA   56 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHH
Confidence            4566678899999999999987    47899999999643

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=96.31  E-value=0.00045  Score=65.61  Aligned_cols=53  Identities=25%  Similarity=0.329  Sum_probs=38.1

Q ss_pred             HHHHhccCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          487 LCRATDRFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       487 l~~at~~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ...+.+.|.-.+.||+|+||.||+|+..      +++.||||++..... ....+|.+|+
T Consensus        20 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~   79 (322)
T 1p4o_A           20 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA   79 (322)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHH
Confidence            3345566777889999999999999874      368899999964432 2234566665

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=96.30  E-value=0.0016  Score=67.73  Aligned_cols=41  Identities=27%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             eeccCCCCcEEEEEec---CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          499 LIGRGGFGSVYKARIQ---DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       499 ~ig~G~~G~Vykg~l~---~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      .||+|+||.||+|+..   ++..||||++..... ...++|.+|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~  387 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA  387 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHH
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHH
Confidence            6999999999999884   466899999976542 3356688876

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=96.30  E-value=0.001  Score=62.85  Aligned_cols=48  Identities=29%  Similarity=0.414  Sum_probs=35.2

Q ss_pred             ccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|+.      .+|+.||||++..... ...+.|..|+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   77 (313)
T 1t46_A           23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSEL   77 (313)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHH
Confidence            4556668899999999999985      3568999999975432 2234576665

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=96.30  E-value=0.0013  Score=61.60  Aligned_cols=46  Identities=26%  Similarity=0.374  Sum_probs=32.5

Q ss_pred             CCccCeeccCCCCcEEEEEe-----cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARI-----QDGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-----~~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      |.....||+|+||.||+|++     .+|+.||||++.... ....+.|.+|+
T Consensus        23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   74 (302)
T 4e5w_A           23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEI   74 (302)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHH
T ss_pred             hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHH
Confidence            44557899999999999995     468899999997443 22235566665

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=96.30  E-value=0.001  Score=63.20  Aligned_cols=49  Identities=31%  Similarity=0.569  Sum_probs=31.1

Q ss_pred             hccCCccCeeccCCCCcEEEEEecCC----CEEEEEEecccc--CCcchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQDG----MEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~g----~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      .+.|.-.+.||+|+||.||+|+....    ..||||++....  ....++|..|+
T Consensus        22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~   76 (323)
T 3qup_A           22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREA   76 (323)
T ss_dssp             ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHH
T ss_pred             hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHH
Confidence            45677778999999999999998543    279999996542  22345577765

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=96.29  E-value=0.0014  Score=62.82  Aligned_cols=53  Identities=21%  Similarity=0.293  Sum_probs=39.3

Q ss_pred             HHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc-----CCcchhhhhhc
Q 045304          487 LCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC-----SGAFKSFDVEC  539 (540)
Q Consensus       487 l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~-----~~~~~~F~~E~  539 (540)
                      +....+.|.-.+.||+|+||.||+|+. .+|..||||++....     ....+.|..|+
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~   79 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEV   79 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHH
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHH
Confidence            445566788889999999999999987 467899999985431     22345576665

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=96.25  E-value=0.00089  Score=63.30  Aligned_cols=54  Identities=26%  Similarity=0.341  Sum_probs=38.5

Q ss_pred             HHHHHhccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccCC-cchhhhhhc
Q 045304          486 ELCRATDRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       486 ~l~~at~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +.....++|.-.+.||+|+||+||+|+.      .+|+.||||++...... ..+.|..|+
T Consensus        21 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   81 (316)
T 2xir_A           21 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSEL   81 (316)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             ceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHH
Confidence            3334456777788999999999999985      35689999999654322 234566665

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=96.25  E-value=0.0012  Score=62.46  Aligned_cols=45  Identities=24%  Similarity=0.276  Sum_probs=33.1

Q ss_pred             CccCeeccCCCCcEEEEEec-----CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          495 SENNLIGRGGFGSVYKARIQ-----DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       495 ~~~~~ig~G~~G~Vykg~l~-----~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      .....||+|+||.||+|.+.     +|+.||||++..... +..+.|.+|+
T Consensus        34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   84 (318)
T 3lxp_A           34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEI   84 (318)
T ss_dssp             EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHH
Confidence            44577999999999999863     578999999975432 2234576665

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=96.25  E-value=0.0017  Score=60.46  Aligned_cols=48  Identities=23%  Similarity=0.387  Sum_probs=36.6

Q ss_pred             hccCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .++|.-...||+|+||.||+|+..+ |..||||++.... ...++|..|+
T Consensus        12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~   60 (288)
T 3kfa_A           12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEA   60 (288)
T ss_dssp             GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHH
T ss_pred             ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHH
Confidence            4556667889999999999999864 7899999996533 2345576665

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=96.24  E-value=0.0015  Score=62.68  Aligned_cols=49  Identities=24%  Similarity=0.388  Sum_probs=34.6

Q ss_pred             hccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      .++|.-.+.||+|+||.||+|+.      .++..||||++.... ....+.|..|+
T Consensus        44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   99 (344)
T 1rjb_A           44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSEL   99 (344)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHH
T ss_pred             HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHH
Confidence            45677778999999999999996      345689999996443 22345576665

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=96.23  E-value=0.002  Score=59.67  Aligned_cols=45  Identities=29%  Similarity=0.427  Sum_probs=34.0

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||.||+|... |+.||||++....  ..+.|.+|+
T Consensus        21 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~   65 (278)
T 1byg_A           21 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEA   65 (278)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTH
T ss_pred             hhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHH
Confidence            34556688999999999999985 8999999996433  345576665

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=96.23  E-value=0.0024  Score=60.18  Aligned_cols=47  Identities=32%  Similarity=0.487  Sum_probs=35.0

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCc---chhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGA---FKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~---~~~F~~E~  539 (540)
                      .|.-.+.||+|+||.||+|+- .+|+.||||++.......   .+.|.+|+
T Consensus        13 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~   63 (311)
T 3ork_A           13 RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREA   63 (311)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHH
T ss_pred             cEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHH
Confidence            455568899999999999995 678999999996543222   23466665

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=96.22  E-value=0.0026  Score=59.63  Aligned_cols=48  Identities=27%  Similarity=0.468  Sum_probs=35.8

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      +.|...+.||+|+||.||+|+- .+|+.||||++.... ....+.|..|+
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~   71 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEI   71 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHH
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHH
Confidence            3466678899999999999986 468999999996543 22345566665

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=96.22  E-value=0.0017  Score=61.20  Aligned_cols=48  Identities=33%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC---Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS---GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~---~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|.. .+|+.||||++.....   ...++|.+|+
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~   83 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEI   83 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHH
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHH
Confidence            3566678899999999999986 5789999999964321   1234566665

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=96.22  E-value=0.0035  Score=60.46  Aligned_cols=43  Identities=30%  Similarity=0.470  Sum_probs=26.3

Q ss_pred             HHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          485 LELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       485 ~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      .+.....++|.-.+.||+|+||.||+|+. .+|+.||||++...
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   59 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD   59 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC
Confidence            34566778899999999999999999998 46899999999543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.21  E-value=0.0094  Score=47.76  Aligned_cols=10  Identities=30%  Similarity=0.398  Sum_probs=4.8

Q ss_pred             EeeCCCCCCC
Q 045304          262 TLSLGSNELT  271 (540)
Q Consensus       262 ~L~l~~n~l~  271 (540)
                      .++.+++.++
T Consensus        12 ~v~Cs~~~L~   21 (130)
T 3rfe_A           12 LVDCGRRGLT   21 (130)
T ss_dssp             EEECCSSCCC
T ss_pred             EEEeCCCCCc
Confidence            4444455544

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=96.20  E-value=0.0012  Score=64.32  Aligned_cols=48  Identities=27%  Similarity=0.384  Sum_probs=34.0

Q ss_pred             ccCCccCeeccCCCCcEEEEEe--------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI--------QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l--------~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      +.|.-.+.||+|+||.||+|+.        .++..||||++..... ...++|.+|+
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~  125 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEM  125 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHH
Confidence            3455567899999999999986        2346899999965432 2235566665

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=96.18  E-value=0.0028  Score=62.68  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ..+.|.-.+.||+|+||.||+|.. .+|+.||||++..
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~  170 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISK  170 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEG
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEe
Confidence            456677788999999999999987 4578999999964

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=96.17  E-value=0.0017  Score=61.60  Aligned_cols=37  Identities=35%  Similarity=0.617  Sum_probs=30.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC  528 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~  528 (540)
                      +.|.-...||+|+||.||+|+. .+|+.||||++....
T Consensus        43 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~   80 (320)
T 3a99_A           43 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR   80 (320)
T ss_dssp             TTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGG
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEeccc
Confidence            4566678899999999999985 568899999996543

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=96.16  E-value=0.0018  Score=61.71  Aligned_cols=50  Identities=28%  Similarity=0.347  Sum_probs=34.5

Q ss_pred             HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      ..+.|.-...||+|+||+||+|+- .+|+.||||++......  ..+.|..|+
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~   84 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREV   84 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHH
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHH
Confidence            345677788999999999999985 46889999999644321  234455554

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=96.15  E-value=0.0026  Score=61.41  Aligned_cols=48  Identities=27%  Similarity=0.366  Sum_probs=35.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC------cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG------AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~------~~~~F~~E~  539 (540)
                      +.|.-.+.||+|+||.||+|+-. +|+.||||++......      ..+.|.+|+
T Consensus        12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~   66 (361)
T 2yab_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREV   66 (361)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHH
T ss_pred             hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHH
Confidence            44666688999999999999874 5899999999654321      124566665

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=96.14  E-value=0.0012  Score=62.95  Aligned_cols=48  Identities=31%  Similarity=0.473  Sum_probs=30.0

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCE----EEEEEecccc-CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGME----VAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~----vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ++|...+.||+|+||+||+|+. .+|+.    ||||++.... ....++|.+|+
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~   68 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA   68 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHH
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHH
Confidence            3466778999999999999996 34543    6888886433 23346677775

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=96.14  E-value=0.0023  Score=62.16  Aligned_cols=45  Identities=38%  Similarity=0.592  Sum_probs=32.3

Q ss_pred             ccCeeccCCCCcEEEEEecC--C--CEEEEEEeccccC-CcchhhhhhcC
Q 045304          496 ENNLIGRGGFGSVYKARIQD--G--MEVAVKVFHLHCS-GAFKSFDVECN  540 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l~~--g--~~vAVK~l~~~~~-~~~~~F~~E~~  540 (540)
                      -.+.||+|+||.||+|+..+  +  ..||||++..... ...++|..|++
T Consensus        93 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~  142 (373)
T 3c1x_A           93 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI  142 (373)
T ss_dssp             EEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHT
T ss_pred             cCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34689999999999999742  2  3689999965332 23456777763

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=96.14  E-value=0.0019  Score=61.72  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=30.9

Q ss_pred             hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      .+.|.....||+|+||.||+|+- .+|+.||||++...
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~   60 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKE   60 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEEST
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehh
Confidence            44567778899999999999985 56889999999654

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=96.14  E-value=0.0022  Score=60.93  Aligned_cols=36  Identities=33%  Similarity=0.474  Sum_probs=29.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~  527 (540)
                      ++|.....||+|+||.||+|... +|+.||||++...
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~   58 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRST   58 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecc
Confidence            34556688999999999999984 6899999999654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=96.14  E-value=0.0019  Score=67.54  Aligned_cols=42  Identities=29%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             CeeccCCCCcEEEEEec---CCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQ---DGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~---~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      +.||+|+||.||+|.+.   .++.||||++.....  ...++|.+|+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~  421 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEA  421 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHH
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHH
Confidence            57999999999999773   457899999975432  2245687775

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=96.14  E-value=0.0028  Score=60.37  Aligned_cols=47  Identities=30%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCc--chhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGA--FKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~--~~~F~~E~  539 (540)
                      .|.....||+|+||.||+|+.. +|+.||||++.......  .+.|.+|+
T Consensus        26 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~   75 (331)
T 4aaa_A           26 KYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREI   75 (331)
T ss_dssp             GEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHH
T ss_pred             hheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHH
Confidence            4555678999999999999985 48999999996543221  23455554

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=96.14  E-value=0.0019  Score=62.00  Aligned_cols=38  Identities=24%  Similarity=0.490  Sum_probs=31.5

Q ss_pred             HHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          489 RATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       489 ~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      ...++|.-.++||+|+||.||+|+.. +|+.||||++..
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~   52 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKK   52 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEH
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEh
Confidence            34567888899999999999999984 588999999964

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=96.12  E-value=0.0018  Score=63.20  Aligned_cols=48  Identities=19%  Similarity=0.207  Sum_probs=35.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +.|.-.+.||+|+||.||+|+.. +|+.||+|++..........|.+|+
T Consensus        51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~   99 (387)
T 1kob_A           51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEI   99 (387)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHH
T ss_pred             cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHH
Confidence            45666788999999999999874 6899999999654332334566665

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=96.11  E-value=0.0026  Score=60.46  Aligned_cols=45  Identities=24%  Similarity=0.354  Sum_probs=34.2

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|+- .+|+.||||++....   .+.|..|+
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~   81 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREI   81 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHH
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHH
Confidence            4456678899999999999985 678999999996432   34465554

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=96.10  E-value=0.0043  Score=59.90  Aligned_cols=46  Identities=26%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||+||+|.-. +|+.||||++..... ..+.+.+|+
T Consensus        21 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~   67 (361)
T 3uc3_A           21 RYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREI   67 (361)
T ss_dssp             TEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHH
T ss_pred             cEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHH
Confidence            4555678999999999999985 689999999965432 234455554

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=96.10  E-value=0.0026  Score=62.60  Aligned_cols=41  Identities=32%  Similarity=0.361  Sum_probs=25.9

Q ss_pred             cCeeccCCCCcEEEEEec---CCCEEEEEEeccccCCcchhhhhhc
Q 045304          497 NNLIGRGGFGSVYKARIQ---DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l~---~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ..+||+|+||.||+|+..   +|+.||||++....  ..+.+.+|+
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~   69 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREI   69 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHH
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHH
Confidence            457999999999999975   47899999996432  233455554

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=96.10  E-value=0.0021  Score=60.31  Aligned_cols=49  Identities=22%  Similarity=0.269  Sum_probs=24.7

Q ss_pred             hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      .++|.-.+.||+|+||.||+|.. .+|+.||||++.... ....++|.+|+
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~   64 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEI   64 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC---------------
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHH
Confidence            34566678899999999999986 468999999986433 22345566665

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=96.08  E-value=0.0019  Score=64.77  Aligned_cols=48  Identities=29%  Similarity=0.302  Sum_probs=27.1

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      +.|.-...||+|+||+||+|.- .+|+.||||++.....  ...+.|.+|+
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~  103 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREI  103 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHH
Confidence            4566778899999999999986 4689999999964322  1234566665

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=96.08  E-value=0.0025  Score=61.48  Aligned_cols=48  Identities=27%  Similarity=0.371  Sum_probs=36.0

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC-cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      ++|.....||+|+||.||+|... +|+.||||++...... ..+.|.+|+
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~   82 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIREL   82 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHH
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHH
Confidence            45666788999999999999985 6899999999754322 234566665

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=96.07  E-value=0.0016  Score=61.44  Aligned_cols=48  Identities=27%  Similarity=0.372  Sum_probs=34.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|+.      .+|+.||||++..... ...+.|..|+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   77 (314)
T 2ivs_A           23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEF   77 (314)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHH
Confidence            4455667899999999999986      3458999999965432 2234566665

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=96.07  E-value=0.0021  Score=59.50  Aligned_cols=49  Identities=29%  Similarity=0.501  Sum_probs=35.2

Q ss_pred             hccCCccCeeccCCCCcEEEEEecC----CCEEEEEEeccccC-Ccchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      .++|.-.+.||+|+||.||+|+..+    +..||||++..... ...+.|.+|+
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   64 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEA   64 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHH
Confidence            3556677899999999999999743    23699999975432 2245577665

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=96.06  E-value=0.0021  Score=60.60  Aligned_cols=39  Identities=31%  Similarity=0.620  Sum_probs=29.9

Q ss_pred             HHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          489 RATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       489 ~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      ...++|.-.+.||+|+||.||+|+. .+|+.||||++...
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~   67 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRN   67 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCST
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecc
Confidence            3456688889999999999999986 56889999999644

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=96.05  E-value=0.0035  Score=61.98  Aligned_cols=35  Identities=34%  Similarity=0.673  Sum_probs=29.2

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH  527 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~  527 (540)
                      .|...++||+|+||.||+|+.. +|+.||||++...
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~   90 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD   90 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC
T ss_pred             eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc
Confidence            3555688999999999999985 5899999999643

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=96.04  E-value=0.0027  Score=61.55  Aligned_cols=48  Identities=23%  Similarity=0.268  Sum_probs=29.0

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      +.|.....||+|+||.||+|+- .+|+.||||++......  ..+.+.+|+
T Consensus        25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~   75 (367)
T 1cm8_A           25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYREL   75 (367)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred             ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHH
Confidence            4566678899999999999987 46899999999543211  134466664

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=96.02  E-value=0.0016  Score=63.19  Aligned_cols=48  Identities=29%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      +.|.....||+|+||.||+|.- .+|+.||||++.....  ...+.+.+|+
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~   79 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYREL   79 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHH
Confidence            4566678899999999999985 5689999999964321  1234455654

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=96.01  E-value=0.0024  Score=63.66  Aligned_cols=48  Identities=23%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc---CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      ++|...+.||+|+||.||+|.- .+|+.||||++....   ....+.+..|+
T Consensus       148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~  199 (446)
T 4ejn_A          148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTEN  199 (446)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC------------
T ss_pred             HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHH
Confidence            5677788999999999999986 568999999996431   22234455554

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=95.98  E-value=0.0028  Score=60.20  Aligned_cols=48  Identities=29%  Similarity=0.482  Sum_probs=32.1

Q ss_pred             ccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||.||+|+.      .+|..||||++..... ....+|..|+
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   84 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEA   84 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHH
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHH
Confidence            4566678899999999999985      3467899999964332 2234566664

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=95.98  E-value=0.0031  Score=59.80  Aligned_cols=48  Identities=27%  Similarity=0.370  Sum_probs=35.6

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC------cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG------AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~------~~~~F~~E~  539 (540)
                      +.|.-.+.||+|+||.||+|+.. +|+.||||++......      ..++|.+|+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~   66 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREV   66 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHH
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHH
Confidence            44666788999999999999974 5899999999654321      134576665

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=95.98  E-value=0.0023  Score=62.11  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC  528 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~  528 (540)
                      .|...+.||+|+||.||+|+. .+|+.||||++....
T Consensus        63 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~   99 (371)
T 3q60_A           63 KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGA   99 (371)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCS
T ss_pred             eeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecc
Confidence            455678899999999999996 478999999997644

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=95.97  E-value=0.0033  Score=64.97  Aligned_cols=35  Identities=43%  Similarity=0.757  Sum_probs=30.6

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ++|.-..+||+|+||+||+|+- .+|+.||||++..
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K  224 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDK  224 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeH
Confidence            5687889999999999999987 4689999999953

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=95.95  E-value=0.0033  Score=61.40  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=30.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~  527 (540)
                      ++|.-.++||+|+||.||+|+.. +|+.||||++...
T Consensus        52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~   88 (396)
T 4dc2_A           52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKE   88 (396)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGG
T ss_pred             hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhh
Confidence            46777789999999999999985 4789999999653

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=95.95  E-value=0.002  Score=60.20  Aligned_cols=45  Identities=27%  Similarity=0.471  Sum_probs=31.7

Q ss_pred             CccCeeccCCCCcEEEEEecC-C---CEEEEEEeccccC-Ccchhhhhhc
Q 045304          495 SENNLIGRGGFGSVYKARIQD-G---MEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       495 ~~~~~ig~G~~G~Vykg~l~~-g---~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ...++||+|+||+||+|+..+ +   ..||||++..... ...+.|..|+
T Consensus        24 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~   73 (298)
T 3pls_A           24 HSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREG   73 (298)
T ss_dssp             EEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHH
T ss_pred             ccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHH
Confidence            345789999999999998633 2   3799999965332 2235566665

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=95.95  E-value=0.0026  Score=61.51  Aligned_cols=48  Identities=23%  Similarity=0.254  Sum_probs=35.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC-cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +.|.....||+|+||.||+|.- .+|+.||||++...... ..+.|.+|+
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~   76 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREI   76 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHH
Confidence            4566678999999999999986 46789999999643322 234566665

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=95.94  E-value=0.0032  Score=57.56  Aligned_cols=30  Identities=30%  Similarity=0.476  Sum_probs=26.5

Q ss_pred             cCeeccCCCCcEEEEEe-cCCCE--EEEEEecc
Q 045304          497 NNLIGRGGFGSVYKARI-QDGME--VAVKVFHL  526 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l-~~g~~--vAVK~l~~  526 (540)
                      ...||+|+||.||+|.. .+|+.  ||||++..
T Consensus        52 ~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~   84 (258)
T 1zth_A           52 GGVISTGKEANVFYADGVFDGKPVAMAVKIYRI   84 (258)
T ss_dssp             EEEEEECSSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             CCEEeecceEEEEEEEEcCCCcEeeEEEEEEEC
Confidence            46799999999999998 78999  99998754

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=95.94  E-value=0.0019  Score=62.10  Aligned_cols=36  Identities=39%  Similarity=0.604  Sum_probs=30.5

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      .++|.-.++||+|+||.||+|+.. +|+.||||++..
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~   58 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKK   58 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEH
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEH
Confidence            356777889999999999999874 589999999964

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=95.93  E-value=0.0029  Score=58.92  Aligned_cols=43  Identities=30%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             cCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          497 NNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      ...||+|+||+||+|.. .++..||||++.....  ...+.|..|+
T Consensus        31 ~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~   76 (290)
T 1t4h_A           31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEA   76 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHH
T ss_pred             eeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHH
Confidence            35799999999999987 4578999999965432  1234466664

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=95.91  E-value=0.0038  Score=59.63  Aligned_cols=37  Identities=35%  Similarity=0.615  Sum_probs=31.6

Q ss_pred             HHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          489 RATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       489 ~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      ...+.|.-...||+|+||.||+|+. +|+.||||++..
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~   75 (342)
T 1b6c_B           39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS   75 (342)
T ss_dssp             HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG
T ss_pred             cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc
Confidence            3445788889999999999999998 589999999954

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=95.91  E-value=0.002  Score=62.75  Aligned_cols=37  Identities=38%  Similarity=0.559  Sum_probs=31.2

Q ss_pred             HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      ..++|...+.||+|+||+||+|... +|+.||||++..
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~   89 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN   89 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec
Confidence            3566777889999999999999874 678999999964

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=95.90  E-value=0.0047  Score=59.88  Aligned_cols=36  Identities=36%  Similarity=0.528  Sum_probs=30.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~  527 (540)
                      ++|.-.++||+|+||.||+|+.. +|+.||||++...
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~   74 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKK   74 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGG
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHH
Confidence            45777789999999999999985 5789999999644

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=95.90  E-value=0.003  Score=58.72  Aligned_cols=48  Identities=27%  Similarity=0.416  Sum_probs=36.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc--CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      +.|.-...||+|+||.||+|+.. +|+.||||++....  ....+.|.+|+
T Consensus        22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~   72 (287)
T 2wei_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREV   72 (287)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHH
T ss_pred             hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHH
Confidence            45777789999999999999985 68999999996433  22344566665

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=95.88  E-value=0.0032  Score=60.46  Aligned_cols=35  Identities=29%  Similarity=0.557  Sum_probs=29.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      ++|.....||+|+||.||+|+.. +|+.||||++..
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~   76 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDK   76 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEh
Confidence            45666788999999999999974 689999999954

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=95.87  E-value=0.0032  Score=64.14  Aligned_cols=48  Identities=29%  Similarity=0.520  Sum_probs=35.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      ++|...++||+|+||.||+|+.. +|+.||||++....   ....+.|..|+
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~  236 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEK  236 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHH
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHH
Confidence            45777788999999999999984 58999999995432   12234455554

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=95.87  E-value=0.0035  Score=60.82  Aligned_cols=48  Identities=25%  Similarity=0.293  Sum_probs=34.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      +.|.....||+|+||.||+|.- .+|+.||||++......  ..+.|.+|+
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~   92 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYREL   92 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHH
Confidence            4566678899999999999986 46899999999653322  134465554

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=95.86  E-value=0.0036  Score=59.48  Aligned_cols=42  Identities=26%  Similarity=0.309  Sum_probs=31.7

Q ss_pred             CeeccCCCCcEEEEEec-CCCEEEEEEeccccCC--cchhhhhhc
Q 045304          498 NLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      +.||+|+||.||+|+.. +|+.||||++......  ..++|..|+
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~   79 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEI   79 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHH
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHH
Confidence            67999999999999875 5899999999654322  234566654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=95.85  E-value=0.0041  Score=58.64  Aligned_cols=47  Identities=30%  Similarity=0.445  Sum_probs=31.1

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .+.|...+.||+|+||.||+|+.. +|+.||||++....  ..++|..|+
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~   75 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEI   75 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHH
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHH
Confidence            455777789999999999999985 48999999996533  234566654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=95.85  E-value=0.0037  Score=59.60  Aligned_cols=35  Identities=49%  Similarity=0.789  Sum_probs=29.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~  527 (540)
                      ++|.-...||+|+||.||+|+. +|+.||||++...
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~   47 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA   47 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG
T ss_pred             HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc
Confidence            3555668899999999999988 6899999998643

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=95.85  E-value=0.002  Score=63.13  Aligned_cols=47  Identities=23%  Similarity=0.155  Sum_probs=34.1

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +.|.-...||+|+||+||+|+- .+|+.||||++.... ...+.+.+|+
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~   84 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEI   84 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHH
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHH
Confidence            4466678899999999999985 568899999996432 1234455554

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=95.84  E-value=0.0036  Score=60.92  Aligned_cols=48  Identities=23%  Similarity=0.282  Sum_probs=34.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||.||+|... +|+.||||++....   ....+.+.+|+
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~   66 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKEL   66 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHH
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHH
Confidence            34666788999999999999874 57899999995432   22234455554

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=95.84  E-value=0.0023  Score=63.53  Aligned_cols=48  Identities=31%  Similarity=0.359  Sum_probs=35.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||.||+|+- .+|+.||||++.....  ...+.|.+|+
T Consensus        26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~   76 (432)
T 3n9x_A           26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREI   76 (432)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHH
T ss_pred             CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHH
Confidence            4566678899999999999987 4578999999964322  1234566665

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=95.84  E-value=0.0036  Score=60.20  Aligned_cols=48  Identities=25%  Similarity=0.293  Sum_probs=34.7

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      +.|.....||+|+||.||+|+- .+|+.||||++......  ..+.|.+|+
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~   74 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYREL   74 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHH
Confidence            3455668899999999999987 46899999999643321  124455554

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=95.84  E-value=0.0022  Score=59.81  Aligned_cols=45  Identities=31%  Similarity=0.604  Sum_probs=32.8

Q ss_pred             cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      .|.-...||+|+||.||+|+..  ..||||++......  ..+.|.+|+
T Consensus        25 ~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~   71 (289)
T 3og7_A           25 QITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEV   71 (289)
T ss_dssp             SCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHH
T ss_pred             ceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHH
Confidence            4555678999999999999875  36999999654322  235577775

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=95.83  E-value=0.0029  Score=58.63  Aligned_cols=48  Identities=27%  Similarity=0.361  Sum_probs=33.8

Q ss_pred             ccCCccCeeccCCCCcEEEEEecC----CCEEEEEEeccccCC-cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +.|.-...||+|+||.||+|....    +..||||++...... ..+.|..|+
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~   67 (281)
T 1mp8_A           15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEA   67 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHH
T ss_pred             HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHH
Confidence            345556789999999999999843    457999999653322 234566664

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=95.82  E-value=0.0032  Score=59.40  Aligned_cols=49  Identities=29%  Similarity=0.516  Sum_probs=32.2

Q ss_pred             hccCCccCeeccCCCCcEEEEEecC----CCEEEEEEeccccCC--cchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      .+.|.-.+.||+|+||.||+|....    ++.||||++......  ..+.|..|+
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~   87 (313)
T 3brb_A           33 RNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEA   87 (313)
T ss_dssp             GGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHH
T ss_pred             HHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHH
Confidence            4556667889999999999998742    458999999654322  234566664

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=95.82  E-value=0.0026  Score=61.20  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=27.7

Q ss_pred             ccCCccCeeccCCCCcEEEEEecC---------CCEEEEEEecc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQD---------GMEVAVKVFHL  526 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~---------g~~vAVK~l~~  526 (540)
                      ++|.-.+.||+|+||.||+|+...         |+.||||++..
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~   85 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAK   85 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEET
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecc
Confidence            356666889999999999999863         88999999964

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=95.81  E-value=0.0022  Score=61.76  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             hccCCccCeeccCCCCcEEEEEecC-CCEEEEEEecc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHL  526 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~  526 (540)
                      .++|.-..+||+|+||.||+|+..+ |+.||||++..
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~   55 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKK   55 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEH
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH
Confidence            3567778899999999999999854 78999999964

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=95.81  E-value=0.0038  Score=58.77  Aligned_cols=48  Identities=29%  Similarity=0.425  Sum_probs=35.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCc---chhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGA---FKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~---~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|... +|+.||||++.......   .+.|..|+
T Consensus        34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~   85 (309)
T 2h34_A           34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREA   85 (309)
T ss_dssp             CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHH
T ss_pred             ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHH
Confidence            45666788999999999999974 68899999996543211   24466664

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=95.76  E-value=0.0029  Score=61.15  Aligned_cols=49  Identities=22%  Similarity=0.483  Sum_probs=36.6

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC--cchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      .++|.-.+.||+|+||.||+|+.. +|+.||||++......  ..+.|.+|+
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~   79 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA   79 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHH
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHH
Confidence            456777889999999999999874 5899999999654321  234466665

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=95.76  E-value=0.0031  Score=63.17  Aligned_cols=48  Identities=25%  Similarity=0.153  Sum_probs=34.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc--CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      +.|...+.||+|+||+||+|.- .+|+.||||++....  ....+.+.+|+
T Consensus        62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~  112 (464)
T 3ttj_A           62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYREL  112 (464)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHH
T ss_pred             CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHH
Confidence            4566678899999999999975 468899999996432  12234466664

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=95.76  E-value=0.0027  Score=62.99  Aligned_cols=34  Identities=35%  Similarity=0.496  Sum_probs=28.7

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      .|.-.+.||+|+||.||+|.-. +|+.||||++..
T Consensus        98 ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~  132 (429)
T 3kvw_A           98 RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRN  132 (429)
T ss_dssp             TEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECS
T ss_pred             cEEEEEEcccCccEEEEEEEECCCCcEEEEEEECC
Confidence            4566688999999999999874 478999999964

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=95.74  E-value=0.0033  Score=64.35  Aligned_cols=36  Identities=28%  Similarity=0.610  Sum_probs=31.0

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      .++|...++||+|+||.||+|... +|+.||||++..
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k  219 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEK  219 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEH
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEh
Confidence            356777889999999999999984 689999999954

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=95.66  E-value=0.0062  Score=57.77  Aligned_cols=47  Identities=23%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCE----EEEEEecccc-CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGME----VAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~----vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      +|.....||+|+||.||+|+. .+|+.    ||||++.... .+..+.|..|+
T Consensus        14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~   66 (325)
T 3kex_A           14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHM   66 (325)
T ss_dssp             TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHH
T ss_pred             HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHH
Confidence            344567899999999999986 34544    8888885433 22334455553

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=95.66  E-value=0.0033  Score=59.96  Aligned_cols=36  Identities=33%  Similarity=0.602  Sum_probs=31.1

Q ss_pred             HhccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      ..+.|.-.+.||+|+||.||+|+.. |+.||||++..
T Consensus        35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~   70 (337)
T 3mdy_A           35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFT   70 (337)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEG
T ss_pred             cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEec
Confidence            3456778899999999999999985 89999999954

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=95.64  E-value=0.0035  Score=58.61  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH  527 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~  527 (540)
                      .++|.....||+|+||.||+|... +|+.||||++...
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   53 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVT   53 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecc
Confidence            345667788999999999999984 5889999999643

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=95.63  E-value=0.0033  Score=58.57  Aligned_cols=41  Identities=29%  Similarity=0.341  Sum_probs=28.8

Q ss_pred             eeccCCCCcEEEEEec---CCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          499 LIGRGGFGSVYKARIQ---DGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       499 ~ig~G~~G~Vykg~l~---~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      .||+|+||.||+|...   +++.||||++.....  ...++|.+|+
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~   69 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEA   69 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHH
T ss_pred             ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHH
Confidence            8999999999999763   367899999965432  1235577765

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=95.61  E-value=0.0058  Score=60.65  Aligned_cols=31  Identities=29%  Similarity=0.391  Sum_probs=26.1

Q ss_pred             ccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          496 ENNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      .+++||+|+||+||.+...+|+.||||++..
T Consensus        19 ~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~   49 (434)
T 2rio_A           19 SEKILGYGSSGTVVFQGSFQGRPVAVKRMLI   49 (434)
T ss_dssp             EEEEEEECSTTCEEEEEESSSSEEEEEEEEG
T ss_pred             ccCeEeeCCCeEEEEEEEECCeEEEEEEEcH
Confidence            4578999999999766666899999999954

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=95.60  E-value=0.004  Score=61.72  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             hccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH  527 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~  527 (540)
                      ...|...++||+|+||+||.....+|+.||||++...
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~   59 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE   59 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH
Confidence            3457788899999999955444457999999999643

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=95.60  E-value=0.0048  Score=58.22  Aligned_cols=36  Identities=28%  Similarity=0.473  Sum_probs=24.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~  527 (540)
                      ++|.....||+|+||.||+|... +|+.||||++...
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   61 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRS   61 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEETT
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEeccc
Confidence            45666788999999999999985 6899999999654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=95.59  E-value=0.005  Score=61.75  Aligned_cols=47  Identities=23%  Similarity=0.364  Sum_probs=34.0

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      +|.-...||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+
T Consensus        17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei   67 (476)
T 2y94_A           17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREI   67 (476)
T ss_dssp             TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHH
T ss_pred             CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHH
Confidence            3445578999999999999974 68999999996432   12234466664

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=95.58  E-value=0.0053  Score=59.00  Aligned_cols=47  Identities=21%  Similarity=0.333  Sum_probs=34.4

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc-----CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC-----SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~-----~~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||+||+|+- .+|+.||||++....     ....+.|.+|+
T Consensus        25 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~   77 (351)
T 3c0i_A           25 VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREA   77 (351)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHH
T ss_pred             ceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHH
Confidence            455668899999999999987 468999999985321     11234576665

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=95.57  E-value=0.0069  Score=58.33  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             CccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          495 SENNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       495 ~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      .-...||+|+||.||+|.-++|+.||||.++.
T Consensus        98 ~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~  129 (397)
T 4gyi_A           98 SVGSRIGVGKESDIMIVADEKGKQKVLKIHRL  129 (397)
T ss_dssp             EEEEEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred             EecCEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence            34567999999999999999999999998854

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=95.57  E-value=0.0033  Score=58.73  Aligned_cols=46  Identities=35%  Similarity=0.554  Sum_probs=31.4

Q ss_pred             CCccCeeccCCCCcEEEEEecCC----CEEEEEEeccccC-Ccchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARIQDG----MEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~~g----~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      |.-.+.||+|+||+||+|+..+.    ..||||++..... ...+.|..|+
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~   77 (298)
T 3f66_A           27 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEG   77 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHH
T ss_pred             hhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHH
Confidence            34457899999999999997432    3689999965332 2234566664

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=95.51  E-value=0.004  Score=60.17  Aligned_cols=38  Identities=32%  Similarity=0.482  Sum_probs=29.9

Q ss_pred             HhccCCccCeeccCCCCcEEEEEecC------CCEEEEEEeccc
Q 045304          490 ATDRFSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLH  527 (540)
Q Consensus       490 at~~f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~  527 (540)
                      .+++|.-.+.||+|+||.||+|...+      ++.||||++...
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~   76 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSD   76 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETT
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeecc
Confidence            34567777899999999999999865      478999998644

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=95.48  E-value=0.004  Score=59.32  Aligned_cols=46  Identities=26%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             cCCccCeeccCCCCcEEEEEe--cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI--QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l--~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .|.-...||+|+||.||+|.-  .+|+.||||++.... ...+.+..|+
T Consensus        15 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~   62 (339)
T 1z57_A           15 RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEI   62 (339)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHH
T ss_pred             ceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHH
Confidence            455567899999999999986  468899999996432 1223455543

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=95.48  E-value=0.0043  Score=59.07  Aligned_cols=49  Identities=22%  Similarity=0.320  Sum_probs=35.4

Q ss_pred             hccCCccCeeccCCCCcEEEEEecC------CCEEEEEEeccccC-Ccchhhhhhc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      .++|.-.+.||+|+||.||+|+...      +..||||++..... ...+.|..|+
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~  100 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSEL  100 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHH
Confidence            4567777899999999999999732      24799999965432 2234566665

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=95.46  E-value=0.0061  Score=59.06  Aligned_cols=48  Identities=25%  Similarity=0.155  Sum_probs=34.8

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      +.|.....||+|+||.||+|.- .+|+.||||++......  ..+.|.+|+
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~   75 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYREL   75 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHH
Confidence            4566678899999999999986 46889999999643221  234465654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=95.45  E-value=0.0093  Score=56.25  Aligned_cols=46  Identities=33%  Similarity=0.675  Sum_probs=33.3

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc--CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|...+  .||||++....  ....+.|..|+
T Consensus        33 ~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~   80 (319)
T 2y4i_B           33 EQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREV   80 (319)
T ss_dssp             SCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTG
T ss_pred             HHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHH
Confidence            455667889999999999999853  49999996432  22235566665

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=95.45  E-value=0.0052  Score=62.05  Aligned_cols=47  Identities=28%  Similarity=0.405  Sum_probs=34.8

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc--CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      .|.-...||+|+||+||+|+-. +|+.||||++....  ....+.|.+|+
T Consensus        23 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~   72 (486)
T 3mwu_A           23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREV   72 (486)
T ss_dssp             HEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHH
T ss_pred             ceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHH
Confidence            4556688999999999999874 68999999995322  22344566665

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=95.42  E-value=0.0059  Score=61.57  Aligned_cols=47  Identities=30%  Similarity=0.449  Sum_probs=35.0

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||.||+|+-. +|+.||||++....   ....+.|.+|+
T Consensus        27 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~   77 (484)
T 3nyv_A           27 RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREV   77 (484)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHH
T ss_pred             ceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHH
Confidence            4555688999999999999875 68999999996433   22234566665

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=95.41  E-value=0.0049  Score=57.12  Aligned_cols=48  Identities=31%  Similarity=0.489  Sum_probs=34.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||.||+|+.. +|+.||||++....   .+..+.|..|+
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~   65 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREI   65 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHH
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHH
Confidence            35666788999999999999985 57789999995432   22234466554

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=95.38  E-value=0.0061  Score=64.13  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=30.8

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      .++|.-..+||+|+||.||+|+.. +|+.||||++..
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~  376 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKK  376 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEH
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEec
Confidence            456777889999999999999974 578999999964

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=95.37  E-value=0.0045  Score=57.70  Aligned_cols=48  Identities=17%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC---Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS---GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~---~~~~~F~~E~  539 (540)
                      +.|...+.||+|+||.||+|... +|+.||+|++.....   ...+.|..|+
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~   66 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEI   66 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHH
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHH
Confidence            34556688999999999999985 478999999864321   1234466664

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=95.36  E-value=0.0048  Score=58.63  Aligned_cols=48  Identities=31%  Similarity=0.473  Sum_probs=33.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCE----EEEEEecccc-CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGME----VAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~----vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ++|...+.||+|+||.||+|.. .+|+.    ||+|++.... ....++|..|+
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~   68 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA   68 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHH
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHH
Confidence            3466678899999999999986 34543    5888885433 33345677665

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=95.36  E-value=0.0065  Score=57.65  Aligned_cols=48  Identities=33%  Similarity=0.572  Sum_probs=32.2

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCE--EEEEEecccc-CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGME--VAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~--vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||.||+|+.. +|..  ||||++.... ....+.|..|+
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~   76 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGEL   76 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHH
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHH
Confidence            34556688999999999999874 4554  5999996433 22345566665

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=95.34  E-value=0.0079  Score=57.51  Aligned_cols=38  Identities=26%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC  528 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~  528 (540)
                      .++|.-...||+|+||.||+|+-. +|+.||||++....
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~   59 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK   59 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc
Confidence            345666788999999999999874 58899999996543

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=95.33  E-value=0.0041  Score=57.82  Aligned_cols=48  Identities=27%  Similarity=0.393  Sum_probs=26.8

Q ss_pred             ccCCccCeeccCCCCcEEEEEec--CCC--EEEEEEecccc---CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ--DGM--EVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~--~g~--~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||.||+|+..  +|+  .||||++....   ....+.|..|+
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~   72 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV   72 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHH
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHH
Confidence            34556688999999999999863  333  68999996542   12235576665

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=95.32  E-value=0.0089  Score=56.99  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=28.7

Q ss_pred             ccCCc-cCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          492 DRFSE-NNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       492 ~~f~~-~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      ++|.- .++||+|+||+||+|... +|+.||||++..
T Consensus        28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   64 (336)
T 3fhr_A           28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYD   64 (336)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEES
T ss_pred             ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecC
Confidence            44554 457999999999999985 689999999954

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.31  E-value=0.0047  Score=65.27  Aligned_cols=48  Identities=23%  Similarity=0.256  Sum_probs=35.1

Q ss_pred             ccCCccCeeccCCCCcEEEEEec--CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ--DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~--~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      +.|.-...||+|+||.||+|+..  +|+.||||++..... ...+.|..|+
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~  130 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAER  130 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHH
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHH
Confidence            45666688999999999999985  589999999964322 2234466664

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=95.27  E-value=0.0075  Score=58.84  Aligned_cols=47  Identities=23%  Similarity=0.309  Sum_probs=34.5

Q ss_pred             cCCccCeeccC--CCCcEEEEEec-CCCEEEEEEeccccCC--cchhhhhhc
Q 045304          493 RFSENNLIGRG--GFGSVYKARIQ-DGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G--~~G~Vykg~l~-~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      .|.-...||+|  +||.||+|+.. +|+.||||++......  ..+.|..|+
T Consensus        26 ~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~   77 (389)
T 3gni_B           26 CYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGEL   77 (389)
T ss_dssp             GEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHH
T ss_pred             cEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHH
Confidence            45556789999  99999999985 6899999999654322  224455554

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=95.25  E-value=0.0051  Score=59.56  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=28.8

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      .|.-...||+|+||.||+|+- .+|+.||||++..
T Consensus        20 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   54 (373)
T 1q8y_A           20 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG   54 (373)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred             eEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC
Confidence            455668899999999999986 5689999999964

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=95.15  E-value=0.0096  Score=58.21  Aligned_cols=35  Identities=31%  Similarity=0.626  Sum_probs=29.2

Q ss_pred             cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH  527 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~  527 (540)
                      .|...++||+|+||+||+|+..++..||||++...
T Consensus        41 ~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~   75 (394)
T 4e7w_A           41 AYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQD   75 (394)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECC
T ss_pred             eEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecC
Confidence            35556889999999999999977778999998543

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=95.14  E-value=0.0058  Score=58.24  Aligned_cols=48  Identities=17%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC---Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS---GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~---~~~~~F~~E~  539 (540)
                      +.|...+.||+|+||.||+|... +|+.||+|++.....   ...+.|..|+
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~   92 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEI   92 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHH
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHH
Confidence            34556688999999999999985 478999999964321   1234466664

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=95.12  E-value=0.009  Score=60.42  Aligned_cols=47  Identities=19%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc--CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC--SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~--~~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||+||+|+-. +|..||||++....  ......|..|+
T Consensus        38 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~   87 (494)
T 3lij_A           38 MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEV   87 (494)
T ss_dssp             HEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHH
T ss_pred             CeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHH
Confidence            4556688999999999999974 68899999996543  22234566665

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=95.05  E-value=0.01  Score=60.21  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=27.9

Q ss_pred             hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304          491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH  527 (540)
Q Consensus       491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~  527 (540)
                      .+.|.....||+|+||+||+|+-. +|+.||||++...
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~   72 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKS   72 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC-
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhh
Confidence            345666788999999999999974 5789999999643

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=94.95  E-value=0.012  Score=55.09  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=25.7

Q ss_pred             CeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304          498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHL  526 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~  526 (540)
                      ++||+|+||.||+|.- .+|+.||||++..
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   53 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD   53 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEecc
Confidence            6799999999999987 5689999999953

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=94.93  E-value=0.012  Score=57.75  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=25.4

Q ss_pred             CeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304          498 NLIGRGGFGSVYKARIQ-DGMEVAVKVFHL  526 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~  526 (540)
                      ++||+|+||+||+|... +|+.||||++..
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~   97 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD   97 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCc
Confidence            67999999999999874 588999999953

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=94.84  E-value=0.006  Score=58.51  Aligned_cols=47  Identities=23%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CC-CEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DG-MEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g-~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +.|.-...||+|+||+||+|.-. +| +.||||++.... ...+.+..|+
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~   67 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEI   67 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHH
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHH
Confidence            34556688999999999999873 34 789999996432 1223454443

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=94.58  E-value=0.014  Score=61.15  Aligned_cols=48  Identities=29%  Similarity=0.371  Sum_probs=34.1

Q ss_pred             ccCCccCeeccCCCCcEEEEEecC----CCEEEEEEeccccCC-cchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +.|.-.+.||+|+||.||+|+...    +..||||++...... ..+.|..|+
T Consensus       390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~  442 (656)
T 2j0j_A          390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEA  442 (656)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHH
T ss_pred             ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHH
Confidence            345556789999999999999842    467999999653322 235577665

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=94.44  E-value=0.0044  Score=64.35  Aligned_cols=48  Identities=25%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      +.|.-...||+|+||.||+|.. .+|+.||||++..... ...+.|..|+
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei   63 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEI   63 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHH
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHH
Confidence            4577778999999999999987 4689999999965422 2234566665

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=94.23  E-value=0.014  Score=55.86  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=23.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEec----CCCEEEEEEeccc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ----DGMEVAVKVFHLH  527 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~----~g~~vAVK~l~~~  527 (540)
                      ++|.-.+.||+|+||.||+|+..    .+..||||+....
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~   76 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQE   76 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecC
Confidence            34666788999999999999985    5789999999654

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=93.23  E-value=0.069  Score=54.39  Aligned_cols=30  Identities=20%  Similarity=0.287  Sum_probs=18.9

Q ss_pred             ccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304          496 ENNLIGRGGFGSVYKARIQDGMEVAVKVFHL  526 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~  526 (540)
                      +.++||+|+||.||+|.. .|..+|+|+...
T Consensus       340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~  369 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVK  369 (540)
T ss_dssp             --------CCEEEEEEEC-SSCEEEEEEECC
T ss_pred             CCCEEeeCCCEEEEEEEE-CCCeEEEEEEec
Confidence            457899999999999976 478999998754

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=89.35  E-value=0.22  Score=30.51  Aligned_cols=10  Identities=10%  Similarity=0.109  Sum_probs=3.9

Q ss_pred             Hhhheeeecc
Q 045304          454 ILLILRYRKR  463 (540)
Q Consensus       454 ~~~~~~~~~~  463 (540)
                      .++++++||+
T Consensus        30 ~~~~~~RRr~   39 (44)
T 2ks1_B           30 GIGLFMRRRH   39 (44)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHhhhhH
Confidence            3334444433

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=84.71  E-value=0.56  Score=43.15  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=33.7

Q ss_pred             CCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +.....+|.|..+.|||.++.||+.|.||+-.........-|.+|.
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea   62 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEA   62 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHH
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHH
Confidence            4455678999999999999999999999987543322223355554

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=84.26  E-value=0.49  Score=28.92  Aligned_cols=11  Identities=18%  Similarity=0.313  Sum_probs=4.3

Q ss_pred             HhhheeeeccC
Q 045304          454 ILLILRYRKRV  464 (540)
Q Consensus       454 ~~~~~~~~~~~  464 (540)
                      ..+++++||++
T Consensus        29 ~~~~~~RRRr~   39 (44)
T 2l2t_A           29 TFAVYVRRKSI   39 (44)
T ss_dssp             HHHHHHHTTCS
T ss_pred             HHHHHhhhhhh
Confidence            33344444333

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=83.10  E-value=0.45  Score=28.16  Aligned_cols=19  Identities=5%  Similarity=0.111  Sum_probs=9.1

Q ss_pred             cceecccchhhHHHHHHHH
Q 045304          435 NALLLGTVLPLSTIFMIVV  453 (540)
Q Consensus       435 ~~~~i~~~i~~~~~~~~~~  453 (540)
                      ...+.+++++.++.+++++
T Consensus        10 ~GaIAGiVvG~v~gv~li~   28 (38)
T 2k1k_A           10 GGEIVAVIFGLLLGAALLL   28 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             CCceeeeehHHHHHHHHHH
Confidence            3445555665554443333

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=81.61  E-value=0.49  Score=28.89  Aligned_cols=7  Identities=14%  Similarity=0.487  Sum_probs=3.2

Q ss_pred             ecccchh
Q 045304          438 LLGTVLP  444 (540)
Q Consensus       438 ~i~~~i~  444 (540)
                      +++.+++
T Consensus        14 Ia~~vVG   20 (44)
T 2jwa_A           14 IISAVVG   20 (44)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            3444455

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	540
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-25
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-13
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-08
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	5e-08
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	7e-08
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-07
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-07
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-07
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-07
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-07
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-07
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-07
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-07
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	6e-07
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	8e-07
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	8e-07
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	9e-07
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-06
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-06
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-06
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-06
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-06
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-06
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-06
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-06
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-06
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-06
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-06
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-06
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	5e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-04
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-06
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	7e-06
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	8e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	8e-06
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	8e-06
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	8e-06
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	9e-06
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	9e-06
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-05
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-05
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-05
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-05
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-05
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-05
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-05
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-05
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-05
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-05
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-05
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-05
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	5e-05
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	5e-05
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	5e-05
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	6e-05
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	7e-05
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	7e-05
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	7e-05
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	9e-05
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-04
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-04
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  105 bits (263), Expect = 2e-25
 Identities = 80/386 (20%), Positives = 145/386 (37%), Gaps = 28/386 (7%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
            L      VL    +   +     ++  +   +     +  S+  +    L NL  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVE--YLNNLTQINFS 74

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLN------KVTLYNNYLTS 121
           +N      P  + N +KL  + + +N  +   P                   +      +
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
           + + L   S+  +  +      S   L      T +  L++      +   +        
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241
           ++ LTNL  +    N+++   P+ +     L  LSL  N+L+      +  LT L +LDL
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 242 GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEI 301
            +N+ S   P   S L  L  L LG+N++++I      L  +  L  + N L    P  I
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDISP--I 303

Query: 302 ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLS 361
            NLK L  +    NN S + P  + SL  LQ LF   N++      S+ +L ++  L+  
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 362 NNNLSGTIPVSLEKLSYLEDLNLSFN 387
           +N +S   P  L  L+ +  L L+  
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 7e-18
 Identities = 66/367 (17%), Positives = 129/367 (35%), Gaps = 71/367 (19%)

Query: 81  NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY 140
             ++     LG  + +  +  T  +L  +  +      + S       +  +     LT 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS-------IDGVEYLNNLTQ 70

Query: 141 IDLSDNPLDGILPGTSVGNLS-----------------------------HSLEYFYMPN 171
           I+ S+N L  I P  ++  L                                 +   + N
Sbjct: 71  INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 172 CNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLS----LADNKLEGSIP 227
                 +    + ++++  +    +    S    ++ L+ L  L+    L  +  + S  
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 228 NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLN 287
           + + +LT L  L   +N+ S   P       +L  LSL  N+L  I  T  +L ++  L+
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIG-TLASLTNLTDLD 247

Query: 288 FSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP--------------------TTIGS 327
            ++N ++   PL    L  L  +    N  S + P                    + I +
Sbjct: 248 LANNQISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 305

Query: 328 LKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387
           LK L YL + +N +    P  +  L  L+ L  +NN +S     SL  L+ +  L+   N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 388 KLAGEIP 394
           +++   P
Sbjct: 362 QISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 16/160 (10%)

Query: 3   PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLE 62
              + +L NL  L L++N++  + P  +  ++ L   ++  N +S          L  L 
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI---SPLAGLTALT 288

Query: 63  VLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS 122
            L +  N      P        L+ L L  N+ S   P    +L  L ++   NN ++  
Sbjct: 289 NLELNENQLEDISPISNLK--NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD- 343

Query: 123 TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSH 162
                 +SSL+N   + ++    N +  + P  ++  ++ 
Sbjct: 344 ------VSSLANLTNINWLSAGHNQISDLTPLANLTRITQ 377

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 302 ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLS 361
             L   +       N +  +  +   L  +  L      ++ SI   +  L +L  +N S
Sbjct: 19  TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFS 74

Query: 362 NNNLSGTIPVSLEKLSYLEDLNLSFN 387
           NN L+   P  L+ L+ L D+ ++ N
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNN 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.6 bits (226), Expect = 4e-21
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 12/260 (4%)

Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
                +DL +N +  I  G    NL + L    + N  +S   P   + L  L  +YL  
Sbjct: 31  PDTALLDLQNNKITEIKDG-DFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
           N+L          LQ+L+       K+  S+ N + ++  +  L     K S      F 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQ 147

Query: 256 NLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVN 315
            +  L  + +    +T+IP        +  L+   N +T      ++ L  L  +  S N
Sbjct: 148 GMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 316 NFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG------TI 369
           + S V   ++ +   L+ L +  N+L   +P  + D   ++ + L NNN+S         
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 370 PVSLEKLSYLEDLNLSFNKL 389
           P    K +    ++L  N +
Sbjct: 265 PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.5 bits (223), Expect = 1e-20
 Identities = 54/316 (17%), Positives = 96/316 (30%), Gaps = 31/316 (9%)

Query: 47  SGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNL 106
              L  +     P+  +L +++N           N   L  L L +N  S   P  F  L
Sbjct: 19  DLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 78

Query: 107 RNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEY 166
             L ++ L  N L      +         KTL  + + +N +  +      G     +  
Sbjct: 79  VKLERLYLSKNQLKELPEKM--------PKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 167 FYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSI 226
                   SG        +  L  I +    +     I       L  L L  NK+    
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVD 187

Query: 227 PNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL 286
             ++  L  L +L L  N  S       +N   LR L L +N+L  +P    + K I  +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247

Query: 287 NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS-- 344
              +N ++                  ++ +     P           + +  N +Q    
Sbjct: 248 YLHNNNIS------------------AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

Query: 345 IPYSIGDLISLKSLNL 360
            P +   +    ++ L
Sbjct: 290 QPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 2e-17
 Identities = 50/246 (20%), Positives = 86/246 (34%), Gaps = 5/246 (2%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
           +P+++    +  ++ L  NK+          L+ L  L L +NK+    P     L +L 
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPL 297
            L L  N+           L  LR       ++        N   ++ L  +    +G  
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS 357
               + +K L  I  +  N + +     G    L  L +  N++      S+  L +L  
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 358 LNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP 417
           L LS N++S     SL    +L +L+L+ NKL                    N +     
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 418 NLRVPP 423
           N   PP
Sbjct: 260 NDFCPP 265

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.7 bits (195), Expect = 4e-17
 Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 5/218 (2%)

Query: 201 SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
            +P  L        L L +NK+      +   L  L+ L L +NK S+  P  F+ L  L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV 320
             L L  N+L  +P         L ++ +             N  ++V +  +    SG+
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 321 IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLE 380
                  +K L Y+ +    +  +IP  +    SL  L+L  N ++     SL+ L+ L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 381 DLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPN 418
            L LSFN ++       +      E    N  L   P 
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.0 bits (188), Expect = 3e-16
 Identities = 58/281 (20%), Positives = 102/281 (36%), Gaps = 21/281 (7%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           ++P ++    +  LL L +NK+  +      N+  L    + NN +S          L  
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVK 80

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           LE L +  N              +L +    +N  +      F  L  +  V L  N L 
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
           SS  +      +     L+YI ++D  +  I  G     L  SL   ++    ++     
Sbjct: 138 SSGIENGAFQGMKK---LSYIRIADTNITTIPQG-----LPPSLTELHLDGNKITKVDAA 189

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
            +  L NL  + L  N ++     +L+    L+ L L +NKL   +P  +     +  + 
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248

Query: 241 LGSNKFSR------SIPACFSNLASLRTLSLGSNELTSIPL 275
           L +N  S         P   +  AS   +SL SN +    +
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 5e-16
 Identities = 51/274 (18%), Positives = 103/274 (37%), Gaps = 25/274 (9%)

Query: 2   IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNL 61
              +  NL+NL  L+L +NK+  + P     +  L+   +S N     L  +       L
Sbjct: 47  KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN----QLKELPEKMPKTL 102

Query: 62  EVLRMRSNNFCGTIPHFIFNASKLSLLELGD--NSFSGFIPDTFGNLRNLNKVTLYNNYL 119
           + LR+  N             +++ ++ELG      SG     F  ++ L+ + + +  +
Sbjct: 103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
           T+    L          +LT + L  N +  +   +  G   ++L    +   ++S    
Sbjct: 163 TTIPQGL--------PPSLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVDN 212

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEG------SIPNNICRL 233
             ++N  +L  ++L  NKL   +P  L+  + +Q + L +N +          P    + 
Sbjct: 213 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

Query: 234 TELYELDLGSNKFSRS--IPACFSNLASLRTLSL 265
                + L SN        P+ F  +     + L
Sbjct: 272 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 22/126 (17%), Positives = 38/126 (30%)

Query: 310 IDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTI 369
           +D   N  + +      +LK L  L +  N++    P +   L+ L+ L LS N L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 370 PVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCKTSTH 429
               + L  L        K+   +  G +            +             K S  
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 430 HTSWKN 435
             +  N
Sbjct: 156 RIADTN 161

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.5 bits (215), Expect = 1e-19
 Identities = 73/296 (24%), Positives = 118/296 (39%), Gaps = 28/296 (9%)

Query: 130 SSLSNCKTLTYIDLSDNPLDGILP-GTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNL 188
            + +    +  +DLS   L    P  +S+ NL +    +     N+ G IP  I+ LT L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR 248
             +Y+    ++G+IP  LS+++ L  L  + N L G++P +I  L  L  +    N+ S 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 249 SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV 308
           +IP  + + + L T    S    +  +        L     S  +       +       
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT 368
                  N        +G  K L  L +  NR+ G++P  +  L  L SLN+S NNL   
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-- 281

Query: 369 IPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPC 424
                                 GEIP+GG+   F   ++  N+ LCGSP   +P C
Sbjct: 282 ----------------------GEIPQGGNLQRFDVSAYANNKCLCGSP---LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.3 bits (173), Expect = 3e-14
 Identities = 56/256 (21%), Positives = 94/256 (36%), Gaps = 13/256 (5%)

Query: 1   EIPHEIGNLRNLELLVLSHN-KLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLP 59
            IP  + NL  L  L +     LVG IP  +  ++ L    +++ ++SG++         
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-K 125

Query: 60  NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL 119
            L  L    N   GT+P  I +   L  +    N  SG IPD++G+   L      +   
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN- 184

Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
                       +        +   D   + +    SV   S           N      
Sbjct: 185 -------RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239
            ++    NL  + L  N++ G++P  L++L+ L  L+++ N L G IP     L      
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVS 296

Query: 240 DLGSNKF--SRSIPAC 253
              +NK      +PAC
Sbjct: 297 AYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 9/270 (3%)

Query: 81  NASKLSLLELGDNSFSGF--IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL 138
              +++ L+L   +      IP +  NL  LN + +                +++    L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQL 103

Query: 139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKL 198
            Y+ ++   + G +P         +L         +SG +P  IS+L NL+ I   GN++
Sbjct: 104 HYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 199 NGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLA 258
           +G+IP +     KL                       L  +DL  N         F +  
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 259 SLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS 318
           + + + L  N L          K++  L+  +N + G LP  +  LK L  ++ S NN  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 319 GVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
           G IP   G+L+         N+     P  
Sbjct: 282 GEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (202), Expect = 4e-18
 Identities = 51/257 (19%), Positives = 81/257 (31%), Gaps = 6/257 (2%)

Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
                I L  N +  +    S     +    +   N                  +     
Sbjct: 32  AASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
            +L    P T   L +L  L L    L+   P     L  L  L L  N         F 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 256 NLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
           +L +L  L L  N ++S+P   F  L  +  L    N +    P    +L  L+ +    
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLE 374
           NN S +    +  L+ LQYL +  N        +      L+    S++ +  ++P  L 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 375 KLSYLEDLNLSFNKLAG 391
                    L+ N L G
Sbjct: 270 GRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 3e-17
 Identities = 51/273 (18%), Positives = 90/273 (32%), Gaps = 9/273 (3%)

Query: 47  SGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNL 106
              L ++        + + +  N               L++L L  N  +      F  L
Sbjct: 20  QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 107 RNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEY 166
             L ++ L +N    S     F         L  + L    L  + PG   G    +L+Y
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATF----HGLGRLHTLHLDRCGLQELGPGLFRGL--AALQY 133

Query: 167 FYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSI 226
            Y+ +  +     +   +L NL  ++L GN+++         L  L  L L  N++    
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 227 PNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL 286
           P+    L  L  L L +N  S       + L +L+ L L  N              +   
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253

Query: 287 NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG 319
             SS+ +   LP  +    +      + N+  G
Sbjct: 254 RGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 60/242 (24%), Positives = 86/242 (35%), Gaps = 4/242 (1%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
           +P  I        I+L GN+++     +    + L  L L  N L          L  L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 238 ELDLGSNKFSRSI-PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNF-SSNFLTG 295
           +LDL  N   RS+ PA F  L  L TL L    L  +    +     L   +   N L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 296 PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISL 355
                  +L  L  +    N  S V       L  L  L +  NR+    P++  DL  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 356 KSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCG 415
            +L L  NNLS     +L  L  L+ L L+ N    +      +          +E+ C 
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263

Query: 416 SP 417
            P
Sbjct: 264 LP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 3/145 (2%)

Query: 251 PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGI 310
            AC        T S     L ++P+          +    N ++          + L  +
Sbjct: 4   GACVCYNEPKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI-PYSIGDLISLKSLNLSNNNLSGTI 369
               N  + +       L  L+ L +  N    S+ P +   L  L +L+L    L    
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 370 PVSLEKLSYLEDLNLSFNKLAGEIP 394
           P     L+ L+ L L  N L     
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPD 146

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 6e-13
 Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 6/209 (2%)

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240
           E+S + + + +      L  ++P  L K      L L++N L       +   T L +L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 241 LGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLE 300
           L   + ++        L  L TL L  N+L S+PL    L  +  L+ S N LT      
Sbjct: 62  LDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNL 360
           +  L  L  +    N    + P  +     L+ L +  N L       +  L +L +L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 361 SNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
             N+L  TIP        L    L  N  
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 9e-08
 Identities = 43/201 (21%), Positives = 66/201 (32%), Gaps = 13/201 (6%)

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
                  +P  +      ++L L +N    F   T      L ++ L    LT       
Sbjct: 18  DKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---- 71

Query: 128 FLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTN 187
                    TL  +   D   + +     +G    +L    +    ++      +  L  
Sbjct: 72  ------VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 188 LIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS 247
           L  +YL GN+L    P  L+   KL+ LSLA+N L       +  L  L  L L  N   
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 248 RSIPACFSNLASLRTLSLGSN 268
            +IP  F     L    L  N
Sbjct: 186 -TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 13/211 (6%)

Query: 81  NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY 140
             +    +     + +   PD   +   L+   L  N L + +      ++L     LT 
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSL-----ATLMPYTRLTQ 59

Query: 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG 200
           ++L    L  +    ++  L                G       + ++    L       
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL-----TS 114

Query: 201 SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
                L  L +LQ L L  N+L+   P  +    +L +L L +N  +       + L +L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSN 291
            TL L  N L +IP  F+    + +     N
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 31/212 (14%), Positives = 59/212 (27%), Gaps = 8/212 (3%)

Query: 131 SLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLII 190
            +S   +   ++     L  + P     +L       ++    +       +   T L  
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 191 IYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI 250
           + L   +L          L  L  L L+ N+L+                   +   S  +
Sbjct: 60  LNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 251 PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGI 310
            A             G+   T  P        +  L+ ++N LT      +  L+ L  +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
               N+    IP        L + F+  N   
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 31/193 (16%), Positives = 52/193 (26%), Gaps = 52/193 (26%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLS------------- 47
            +P ++   ++  +L LS N L       +   + L    +    L+             
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 48  -------------------------------GSLSSIAGVRLPNLEVLRMRSNNFCGTIP 76
                                           SL   A   L  L+ L ++ N      P
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 77  HFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCK 136
             +    KL  L L +N+ +         L NL+ + L  N L +               
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT------IPKGFFGSH 195

Query: 137 TLTYIDLSDNPLD 149
            L +  L  NP  
Sbjct: 196 LLPFAFLHGNPWL 208

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 23/217 (10%)

Query: 184 NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS 243
            L N I I  G + +     +T + L  +  LS     +  +I   +  L  L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 244 NKF-SRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIE 302
           N+    +     + +  L         +++I          L     ++         ++
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 303 NLKVLVGI--------------DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
            L + +                  S+ N      T + +L  L  L    N++    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 349 IGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLS 385
           +  L +L  ++L NN +S   P  L   S L  + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 33/234 (14%), Positives = 74/234 (31%), Gaps = 26/234 (11%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
            L N   +    + +   +     ++  +         ++ ++  +    L NL  L ++
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQ--YLNNLIGLELK 71

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
            N      P           L           P    +     +     +  ++  +D+ 
Sbjct: 72  DNQITDLAPL--------KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 128 FLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTN 187
            L+ LSN + L         +           L+      Y+   N        ++NL+ 
Sbjct: 124 PLAGLSNLQVLYLDLNQITNIS---------PLAGLTNLQYLSIGNAQVSDLTPLANLSK 174

Query: 188 LIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241
           L  +    NK++   P  L+ L  L  + L +N++    P  +   + L+ + L
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 7e-06
 Identities = 39/264 (14%), Positives = 72/264 (27%), Gaps = 50/264 (18%)

Query: 99  IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG 158
            PD    L N  K+    + +T          + ++   +T +      +  I       
Sbjct: 13  FPDP--ALANAIKIAAGKSNVTD-------TVTQADLDGITTLSAFGTGVTTI------- 56

Query: 159 NLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLA 218
                                E +  L NLI + L  N++    P+          LS  
Sbjct: 57  ---------------------EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 219 DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFW 278
             K   +I       T        ++    +  +    L           +L  I     
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL---------YLDLNQITNISP 146

Query: 279 NLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGY 338
                     S           + NL  L  +    N  S + P  + SL  L  + +  
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204

Query: 339 NRLQGSIPYSIGDLISLKSLNLSN 362
           N++    P  + +  +L  + L+N
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTN 226

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWN 279
           N     I +       L EL++ +NK    +PA       L  L    N L  +P    N
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEVPELPQN 325

Query: 280 LKDILYLNFSSNFLTG--PLPLEIENLKV 306
           LK    L+   N L     +P  +E+L++
Sbjct: 326 LK---QLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
           N  +  I         L+ L++++NKL   +P    RL     L    N  +  +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQ 324

Query: 256 NLASLRTLSLGSNELTSIPLTFWNLKDILYLN 287
           N   L+ L +  N L   P    +++D L +N
Sbjct: 325 N---LKQLHVEYNPLREFPDIPESVED-LRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIEN 303
           N  S  I +      SL  L++ +N+L  +P     L+    L  S N L   +P   +N
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLAE-VPELPQN 325

Query: 304 LKVLVGIDFSVNNFSGVIPTTIGSLKGLQ 332
           LK L       N      P    S++ L+
Sbjct: 326 LKQL---HVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 276 TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLF 335
            F  L ++    +  N  +  +    +    L  ++ S N     +P     L   + L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLI 310

Query: 336 VGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYL 379
             +N L   +P       +LK L++  N L    P   E +  L
Sbjct: 311 ASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 116 NNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS 175
            N    + S     S      +L  +++S+N L        +  L   LE       +++
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL------IELPALPPRLERLIASFNHLA 317

Query: 176 GGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQ 213
             +PE   NL  L   ++  N L    P     ++ L+
Sbjct: 318 -EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 17/106 (16%), Positives = 28/106 (26%), Gaps = 19/106 (17%)

Query: 66  MRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSD 125
              N     I         L  L + +N     +P     L  L       N+L      
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHLAEVPEL 322

Query: 126 LNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPN 171
                     + L  + +  NPL          ++  S+E   M +
Sbjct: 323 P---------QNLKQLHVEYNPL------REFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 231 CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSS 290
           C   + +EL+L +   S S+P        L +L    N LT +P    +LK +L  N + 
Sbjct: 35  CLDRQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL 90

Query: 291 NFLTGPLPL 299
             L+   PL
Sbjct: 91  KALSDLPPL 99

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 338 YNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGG 397
            N     I        SL+ LN+SNN L   +P    +   LE L  SFN L  E+P   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVP--E 321

Query: 398 SFGNFSAESFEGNEL 412
              N      E N L
Sbjct: 322 LPQNLKQLHVEYNPL 336

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 1e-08
 Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 23/224 (10%)

Query: 168 YMPNCNVSGGIPEEIS------NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNK 221
            + +  ++  +P  I            I   L    +     +T ++L  +  +   ++ 
Sbjct: 2   PLGSETIT--VPTPIKQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD 57

Query: 222 LEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLK 281
           ++      I  L  + +L L  NK +         LA+L+ L     +   +        
Sbjct: 58  IKS--VQGIQYLPNVTKLFLNGNKLT-----DIKPLANLKNLGWLFLDENKVKDLSSLKD 110

Query: 282 DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
                + S           + +L  L  +    N  + +   +   L  L  L +  N++
Sbjct: 111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSR--LTKLDTLSLEDNQI 168

Query: 342 QGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLS 385
              +P  +  L  L++L LS N++S  +  +L  L  L+ L L 
Sbjct: 169 SDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 81  NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY 140
             ++     L   S +  +  T   L +++++   N+ + S       +  +     +T 
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-------VQGIQYLPNVTK 72

Query: 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG 200
           + L+ N L  I     + NL +    F   N        +++  L +L + + G + +NG
Sbjct: 73  LFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 201 SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
            + +   +              + +    + RLT+L  L L  N+ S  +P   + L  L
Sbjct: 130 LVHLPQLESLY-------LGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSS 290
           + L L  N ++ +      LK++  L   S
Sbjct: 181 QNLYLSKNHISDLR-ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 31/223 (13%), Positives = 63/223 (28%), Gaps = 32/223 (14%)

Query: 2   IPHEIG------NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAG 55
           +P  I                L    +   +      ++++     +N+ +     S+ G
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK----SVQG 63

Query: 56  VR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL 114
           ++ LPN+  L +  N      P      + L  L       +     +        K   
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPL-----ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118

Query: 115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV 174
             +   S  + L  L  L +             L                +   +   + 
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITVLS------------RLTKLDTLSLEDN 166

Query: 175 SGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSL 217
                  ++ LT L  +YL  N ++  +   L+ L+ L  L L
Sbjct: 167 QISDIVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLEL 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 33/259 (12%), Positives = 80/259 (30%), Gaps = 9/259 (3%)

Query: 3   PHEIGNL--RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           P   G L  + +       + +   +  + F+   ++  ++SN+ +  S       +   
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELG--DNSFSGFIPDTFGNLRNLNKVTLYNNY 118
           L+ L +        I + +   S L  L L          +     +   L+++ L   +
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132

Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
             +       ++ +S   T   +      L      T V    + +      +  +    
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192

Query: 179 PEEISNLTNLIIIYLGG-NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
            +E   L  L  + L     +     + L ++  L+ L +     +G++      L    
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP--- 249

Query: 238 ELDLGSNKFSRSIPACFSN 256
            L +  + F+        N
Sbjct: 250 HLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 50/264 (18%), Positives = 94/264 (35%), Gaps = 16/264 (6%)

Query: 139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKL 198
             +DL+   L    P  +   LS  +  F  P   +   + E  S    +  + L  + +
Sbjct: 3   QTLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVI 58

Query: 199 NG-SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS--NKFSRSIPACFS 255
              ++   LS+  KLQ LSL   +L   I N + + + L  L+L         ++    S
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 256 NLASLRTLSLGSNELTSIPLTFWNLKDILY-------LNFSSNFLTGPLPLEIENLKVLV 308
           + + L  L+L      +       +  +           +  N     L   +     LV
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 309 GIDFSVN-NFSGVIPTTIGSLKGLQYLFVGY-NRLQGSIPYSIGDLISLKSLNLSNNNLS 366
            +D S +             L  LQ+L +     +       +G++ +LK+L +      
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 367 GTIPVSLEKLSYLEDLNLSFNKLA 390
           GT+ +  E L +L+     F  +A
Sbjct: 239 GTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 37/297 (12%), Positives = 87/297 (29%), Gaps = 43/297 (14%)

Query: 42  SNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSG-FIP 100
           +  +L         +    +   R   +     +    F+  ++  ++L ++      + 
Sbjct: 8   TGKNLHPD--VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 64

Query: 101 DTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL 160
                   L  ++L    L+        +++L+    L  ++LS           ++ + 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPI-----VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 161 SHSLEYFYMPNCNVSGGIPEEIS---NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSL 217
              L+   +  C        +++       +  + L G + N       + +++   L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 218 ADN----KLEGSIPNNICRLTELYELDL-GSNKFSRSIPACFSNLASLRTLSLGSNELTS 272
            D      L+        +L  L  L L                + +L+TL +       
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV------- 232

Query: 273 IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLK 329
                                 G L L  E L  L     + ++F+ +   TIG+ K
Sbjct: 233 ----------------FGIVPDGTLQLLKEALPHL---QINCSHFTTIARPTIGNKK 270

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (126), Expect = 4e-08
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 482 FSYLELCRATDRFSEN---------NLIGRGGFGSVYKARI----QDGMEVAVKVFHLHC 528
           F++ +   A   F++           +IG G FG V    +    +  + VA+K      
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 529 S 529
           +
Sbjct: 67  T 67

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 5e-08
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN 540
           +       +G G FG V+        +VAVK      S +  +F  E N
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEAN 60

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 7e-08
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFH 525
           +       +G+G FG V+         VA+K   
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK 50

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 485 LELCRATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKS 534
           +EL    D F + + +G G  G V+K      G+ +A K+ HL    A ++
Sbjct: 1   MEL--KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRN 49

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 487 LCRATDRFSENNLIGRGGFGSVYKAR--IQDGMEVAVKVFHLH 527
           LCRA  ++     IG G +G V+KAR     G  VA+K   + 
Sbjct: 2   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQ 44

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527
           +++     IG G +G VYKA+   G   A+K   L 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLE 37

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV 320
           R L L   +LT +      L  + +L+ S N L    P  +  L+ L  +  S N    V
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 321 IPTTIGSLKGLQYLFVGYNRLQG-SIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYL 379
                      Q L +  NRLQ  +    +     L  LNL  N+L     +       L
Sbjct: 59  DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 380 EDLN 383
             ++
Sbjct: 117 PSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 7e-06
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
           +   +  L  +  + L  N+L    P  L+ L+ L+ L  +DN LE           +  
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQ-- 68

Query: 238 ELDLGSNKFSR-SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDIL 284
           EL L +N+  + +      +   L  L+L  N L         L ++L
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
           +  DL  L  L     +T++DLS N L  + P      L+       +   + +    + 
Sbjct: 6   AHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALENVDG 60

Query: 182 ISNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
           ++NL  L  + L  N+L  S  I  L    +L  L+L  N L         RL E+
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 8/125 (6%)

Query: 215 LSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
           L LA   L  ++  ++ +L  +  LDL  N+     P   + L  L  L    N L ++ 
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 275 LTFWNLKDILYLNFSSNFLTG-PLPLEIENLKVLVGIDFSVNNFS---GVIPTTIGSLKG 330
               NL  +  L   +N L        + +   LV ++   N+     G+       L  
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 331 LQYLF 335
           +  + 
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 6/118 (5%)

Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLP 298
           L L     +  +      L  +  L L  N L ++P     L+ +  L  S N L     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 299 LEIENLKVLVGIDFSVNNFSGV-IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISL 355
           +          +    N          + S   L  L +  N L          L  +
Sbjct: 61  VANLPRLQE--LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 285 YLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS 344
            L+ +   LT    LE   L ++  +D S N    + P  + +L+ L+ L    N L+  
Sbjct: 2   VLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 345 IPYSIGDLISLKSLNLSNNNLSGTIPV-SLEKLSYLEDLNLSFNKLAGE 392
              +    +  + L L NN L  +  +  L     L  LNL  N L  E
Sbjct: 59  DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 11/129 (8%)

Query: 88  LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP 147
           L L     +  +      L  +  + L +N L +    L  L  L   +       + + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 148 LDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLS 207
           +  +     +  L +        N        + + +   L+++ L GN L     I   
Sbjct: 61  VANLPRLQEL-LLCN--------NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

Query: 208 KLQKLQGLS 216
             + L  +S
Sbjct: 112 LAEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 15  LVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGT 74
           L L+H  L   +   +  +  +   ++S+N L     ++A   L  LEVL+   N     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDNALENV 58

Query: 75  IPHFIFNASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSL 132
                    +   L L +N            +   L  + L  N L         L+ +
Sbjct: 59  DGVANLPRLQE--LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKSFDVE 538
           + +    ++GRG    V +        E AVK+  +   G+F + +V+
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQ 50

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 48.6 bits (115), Expect = 3e-07
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527
            L+G G   +V+    +   E  VK   + 
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVG 35

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFH 525
              +    IG G FG V+     +  +VA+K   
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIR 38

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 4e-07
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 487 LCRATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
            C    ++ +   IG+G FG V+KAR  + G +VA+K   + 
Sbjct: 5   FCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLME 46

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKSFDVE 538
             +++    IG+G  G+VY A  +  G EVA++  +L      +    E
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINE 67

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFH 525
           + FS + +IGRGGFG VY  R    G   A+K   
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 38

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (116), Expect = 6e-07
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
              FS+   IG G FG+VY AR +++   VA+K     
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYS 51

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 8e-07
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQDG-----MEVAVKVFHLHCS 529
              +   +IG G FG VYK  ++       + VA+K      +
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT 49

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 8e-07
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           + F +   IG G +G VYKAR    G  VA+K   L 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 38

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.2 bits (114), Expect = 9e-07
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCS 529
           +DR+    ++G GG   V+ AR ++   +VAVKV     +
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLA 45

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 480 RRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFH 525
              +Y +        +  + +G G +G VY+   +   + VAVK   
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK 51

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFH 525
             +++  +IG G FG VY+A+    G  VA+K   
Sbjct: 20  VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVL 54

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFH 525
              +    +G G FG V   + +   +VA+K+  
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK 37

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 489 RATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHL 526
           R  +R+     IG G FG +Y    I  G EVA+K+  +
Sbjct: 4   RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECV 42

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 482 FSYLELCRA----TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           F   EL +      +R+   + +G G +GSV  A   + G+ VAVK     
Sbjct: 4   FYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRP 54

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFH 525
             R++  + IG G +G V  A    + + VA+K   
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKIS 42

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 489 RATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFH 525
           +  + F    ++G G F +V  AR +    E A+K+  
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILE 42

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKAR------IQDGMEVAVKVFHLHCS 529
           +   LE  R  +       IG G FG V++AR       +    VAVK+     S
Sbjct: 4   KLLSLEYPR--NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS 56

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
            ++ +   IG G +G+V+KA+  +    VA+K   L 
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLD 38

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           D +     +G G F  V K R    G++ A K     
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKR 46

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           D+F     +G G FG V   +  + G   A+K+    
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQ 77

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKSFDVE 538
            D +     +G G FG VYKA+  +  +  A KV         + + VE
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVE 59

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 5e-06
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
             + +   +G G +G+V  A   + G +VA+K  +  
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRP 54

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 37/200 (18%), Positives = 78/200 (39%), Gaps = 15/200 (7%)

Query: 183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG 242
           + L   +   LG   +     ++ + L ++  L      ++ SI   +  L  L +++  
Sbjct: 15  TALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFS 70

Query: 243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIE 302
           +N+ +        NL  L  + + +N++  I              F++          + 
Sbjct: 71  NNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 303 NLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSN 362
           NL  L     ++++ S +   T       Q L    N++    P  + +L +L+ L++S+
Sbjct: 129 NLNRLELSSNTISDISALSGLTSL-----QQLNFSSNQVTDLKP--LANLTTLERLDISS 181

Query: 363 NNLSGTIPVSLEKLSYLEDL 382
           N +S      L KL+ LE L
Sbjct: 182 NKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 24/208 (11%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
            L      VL    +   +     ++  +   +     +  S+  +    L NL  +   
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVE--YLNNLTQINFS 70

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
           +N         + N +KL  + + +N  +   P           +            +L 
Sbjct: 71  NNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 128 FLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTN 187
            L+ L                   +   S  +   SL+     +  V+   P  ++NLT 
Sbjct: 129 NLNRLELSSN-------------TISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTT 173

Query: 188 LIIIYLGGNKLNGSIPITLSKLQKLQGL 215
           L  + +  NK++  I + L+KL  L+ L
Sbjct: 174 LERLDISSNKVS-DISV-LAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 27/197 (13%)

Query: 81  NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY 140
             ++     LG  + +  +  +  +L  +  +      + S       +  +     LT 
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-------IDGVEYLNNLTQ 66

Query: 141 IDLSDNPLDGILP--------------GTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLT 186
           I+ S+N L  I P                       +           +  I +      
Sbjct: 67  INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 126

Query: 187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKF 246
              +  L  +    S    LS L  LQ L+ + N++    P  +  LT L  LD+ SNK 
Sbjct: 127 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV 184

Query: 247 SRSIPACFSNLASLRTL 263
           S  I    + L +L +L
Sbjct: 185 S-DISV-LAKLTNLESL 199

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
            D +   +++G G F  V  A   +    VA+K     
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKK 45

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 496 ENNLIGRGGFGSVYKARIQD---GMEVAVKVFHLH 527
           E+  +G G FG+V K   Q       VAVK+    
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNE 45

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527
            + +    IG G FG+VYK +     +VAVK+ ++ 
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVT 41

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQDG---MEVAVKVFHLHCS-GAFKSFDVECN 540
           +     ++IG G FG V KARI+     M+ A+K    + S    + F  E  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELE 62

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFH 525
           + F     +G+G FG+VY AR  Q    +A+KV  
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLF 40

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 485 LELCRATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKV 523
           L + + T+ F +  ++G G FG+VYK   I +G +V + V
Sbjct: 3   LRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 41

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.2 bits (106), Expect = 9e-06
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
             +     IG G FG +++   + +  +VA+K     
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR 41

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 45.5 bits (107), Expect = 9e-06
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKSFDVE 538
           D +  +  +G G FG V++      G   A K          ++   E
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKE 73

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFH 525
           + F  + ++G+G FG V+ A   +     A+K   
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALK 36

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           + F    L+G+G FG V   R    G   A+K+    
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKE 41

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           + +     +G G +G V  A        VAVK+  + 
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMK 41

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
            R+     IG G  G V  A        VA+K     
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP 53

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 39/327 (11%), Positives = 85/327 (25%), Gaps = 24/327 (7%)

Query: 78  FIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKT 137
           F      L L  +        +        ++ ++ L  N + +  +      ++++ K 
Sbjct: 3   FSIEGKSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAAR-WLSENIASKKD 60

Query: 138 LTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPN-CNVSGGIPEEISNLTNLIIIYLGGN 196
           L   + SD     +                  P    V              +I +L  +
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 197 KLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSN 256
                + +  + L    G  +A    E ++         L  +  G N+        ++ 
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180

Query: 257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNN 316
                 L      + +          +L        L      +     +          
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240

Query: 317 FSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD------LISLKSLNLSNNNLSGTIP 370
               +          + L +    L      ++ D       I L++L L  N +     
Sbjct: 241 SWPNL----------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290

Query: 371 VSL-----EKLSYLEDLNLSFNKLAGE 392
            +L     EK+  L  L L+ N+ + E
Sbjct: 291 RTLKTVIDEKMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 8e-05
 Identities = 36/308 (11%), Positives = 78/308 (25%), Gaps = 25/308 (8%)

Query: 1   EIPHEIGNLRNLELLVLSHNKL----VGVIPTKVFNVSTLKVFEVSNNSLSGSLSSI--- 53
            +   +    +++ +VLS N +       +   + +   L++ E S+         I   
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 54  ------AGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLR 107
                 A ++ P L  +R+  N F  T    + +              +  +    G   
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 108 NLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYF 167
                 L  N    +   L  +    N      +                  +  +    
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNGIRP 200

Query: 168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP 227
                 +  G+          +      +  + ++ I L     L+ L L D  L     
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 228 NNI------CRLTELYELDLGSNKFSRSIP-----ACFSNLASLRTLSLGSNELTSIPLT 276
             +           L  L L  N+                +  L  L L  N  +     
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320

Query: 277 FWNLKDIL 284
              ++++ 
Sbjct: 321 VDEIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 329 KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG----TIPVSLEKLSYLEDLNL 384
           K L+   +     + S+   + +  S+K + LS N +       +  ++     LE    
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 385 SFNKLAGEIPRGGSFGNFSAESFEGNELLC 414
           S                   ++      L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 492 DRFSENNLIGRGGFGSVYKA------RIQDGMEVAVKVFHLHCS 529
           ++ + +  +G+G FG VY+       + +    VA+K  +   S
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS 63

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
            ++    L+G GGFGSVY    + D + VA+K     
Sbjct: 4   SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKD 40

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 498 NLIGRGGFGSVYKAR-IQDGMEVAVKVFHL 526
           + +G G F +VYKAR       VA+K   L
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKL 33

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 461 RKRVKPPPNDANMP-PVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKAR-IQDGME 518
           R RV     D N   P   W   S++      D +     +GRG +  V++A  I +  +
Sbjct: 6   RARV---YTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEK 62

Query: 519 VAVKVFH 525
           V VK+  
Sbjct: 63  VVVKILK 69

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKSFDVE 538
           D +     +G G FG V++      G     K  +        +   E
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNE 76

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN 540
                   IG+G FG V       G +VAVK   +      ++F  E +
Sbjct: 7   KELKLLQTIGKGEFGDVMLGD-YRGNKVAVKC--IKNDATAQAFLAEAS 52

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 500 IGRGGFGSVYKARIQDGMEVAVKVFHLH 527
           IG+G FG V++ +   G EVAVK+F   
Sbjct: 11  IGKGRFGEVWRGK-WRGEEVAVKIFSSR 37

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 489 RATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           RA D +     IG G +G   K R   DG  +  K     
Sbjct: 2   RAED-YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYG 40

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 6/40 (15%)

Query: 492 DRFSENNLIGRGGFGSVYKAR------IQDGMEVAVKVFH 525
           DR      +GRG FG V +A             VAVK+  
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLK 52

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 492 DRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFH 525
           +R S    +G G FG V +A           M VAVK+  
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK 62

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 5/226 (2%)

Query: 49  SLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRN 108
            ++ I      N   LR                 S    LE  + S +  +     ++ +
Sbjct: 19  KVTEIPSDLPRNAIELRFVLTKLRVIQKGAF---SGFGDLEKIEISQNDVLEVIEADVFS 75

Query: 109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFY 168
                       ++        +  N   L Y+ +S+  +  +     + +L   L    
Sbjct: 76  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 135

Query: 169 MPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPN 228
                 +      +      +I++L  N +        +  Q  +     +N LE    +
Sbjct: 136 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND 195

Query: 229 NICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
                +    LD+   +          NL  LR  S     L  +P
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 27/216 (12%), Positives = 55/216 (25%), Gaps = 7/216 (3%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELY 237
           IP ++    N I +     KL        S    L+ + ++ N +   I  ++       
Sbjct: 23  IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSN-----ELTSIPLTFWNLKDILYLNFSSNF 292
                    +       +         L  +      L  +       K +L +  + N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 293 LTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL 352
            T      +      V +  + N    +        +  +      N L+          
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 353 ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNK 388
                L++S   +       LE L  L   +    K
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 9/228 (3%)

Query: 1   EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN 60
           EIP ++   RN   L     KL  +          L+  E+S N +   + +     LP 
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 61  LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
           L  +R+   N    I    F         L     S        ++  ++ +      + 
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLP----NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 135

Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPE 180
            + +      +     +   + L  N            N +   E     N N+     +
Sbjct: 136 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND 195

Query: 181 EISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPN 228
                +  +I+ +   +++      L  L+KL+  S  + K    +P 
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 3/160 (1%)

Query: 259 SLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIE-NLKVLVGIDFSVNNF 317
              T+      L  IP           L  + N L       +   L  LV ++   N  
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 318 SGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLS 377
           +G+ P        +Q L +G N+++         L  LK+LNL +N +S  +P S E L+
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 378 YLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP 417
            L  LNL+ N                 +S  G    CG+P
Sbjct: 127 SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 16/190 (8%)

Query: 133 SNCK-TLTYIDLSDNPL----DGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTN 187
           + C    T +D +   L      I   T+   L+ +       +             L +
Sbjct: 4   AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGL--------FGRLPH 55

Query: 188 LIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS 247
           L+ + L  N+L G  P        +Q L L +NK++         L +L  L+L  N+ S
Sbjct: 56  LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115

Query: 248 RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVL 307
             +P  F +L SL +L+L SN         W  + +   + +        P ++ ++++ 
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIK 175

Query: 308 VGIDFSVNNF 317
              D   + F
Sbjct: 176 ---DLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 6/165 (3%)

Query: 178 IPEEISNLTNLIIIYLGGNKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPNNICRLTEL 236
           IP +I    +   + L  N+L       L  +L  L  L L  N+L G  PN     + +
Sbjct: 23  IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296
            EL LG NK        F  L  L+TL+L  N+++ +    +   + L     ++     
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140

Query: 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
                   + L     +        P+    ++ +Q   + ++  
Sbjct: 141 NCHLAWFAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 331 LQYLFVGYNRLQGS-IPYSIGDLISLKSLNLSNNNLSG----TIPVSLEKLSYLEDLNLS 385
           +Q L +    L  +     +  L   + + L +  L+      I  +L     L +LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 386 FNKLAGEIPR 395
            N+L      
Sbjct: 64  SNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 331 LQYLFVGYNRLQG----SIPYSIGDLISLKSLNLSNNNLSGTIPVSL-----EKLSYLED 381
           L+ L++    +      S+  ++    SL+ L+LSNN L     + L     +    LE 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 382 LNLSFNKLAGEIPR 395
           L L     + E+  
Sbjct: 431 LVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 7e-05
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 303 NLKVLVGIDFSVNNFSGV-IPTTIGSLKGLQYLFVGYNRLQG----SIPYSIGDLISLKS 357
           +++ L   D      S       +  L+  Q + +    L       I  ++    +L  
Sbjct: 3   DIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 358 LNLSNNNLSGTIPVSL-----EKLSYLEDLNLS 385
           LNL +N L       +          ++ L+L 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 9e-05
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 85  LSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDL 143
           +  L++     S     +    L+    V L +  LT +    +  S+L     L  ++L
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK-DISSALRVNPALAELNL 62

Query: 144 SDNPLDGILP---GTSVGNLSHSLEYFYMPNCN 173
             N L  +        +   S  ++   + NC 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 187 NLIIIYLGGNKLNGS-IPITLSKLQKLQGLSLADNKLEG----SIPNNICRLTELYELDL 241
           ++  + +   +L+ +     L  LQ+ Q + L D  L       I + +     L EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 242 GSNKFSRSIPACF-----SNLASLRTLSLGSN 268
            SN+       C      +    ++ LSL + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 22/120 (18%)

Query: 92  DNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGI 151
           D                L  + L +  ++  +S  +  ++L    +L  +DLS+N L   
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSD-SSCSSLAATLLANHSLRELDLSNNCLG-- 410

Query: 152 LPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQK 211
                +  L  S+                       L  + L     +  +   L  L+K
Sbjct: 411 --DAGILQLVESVR-----------------QPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 302 ENLKVLVGIDFSVNNFSGV----IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLI---- 353
           +   VL  +  +  + S      +  T+ +   L+ L +  N L  +    + + +    
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 354 -SLKSLNLSNNNLSGTIPVSLEKL 376
             L+ L L +   S  +   L+ L
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 6e-04
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 4/90 (4%)

Query: 36  LKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNF----CGTIPHFIFNASKLSLLELG 91
           ++  ++    LS +  +     L   +V+R+         C  I   +     L+ L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 92  DNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
            N                    +    L +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 7e-04
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 282 DILYLNFSSNFLT-GPLPLEIENLKVLVGIDFSVNNFSGV----IPTTIGSLKGLQYLFV 336
           DI  L+     L+       +  L+    +       +      I + +     L  L +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 337 GYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367
             N L     + +   +   S  +   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 9e-04
 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 6/73 (8%)

Query: 235 ELYELDLGSNKFS-RSIPACFSNLASLRTLSLGSNELT-----SIPLTFWNLKDILYLNF 288
           ++  LD+   + S          L   + + L    LT      I         +  LN 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 289 SSNFLTGPLPLEI 301
            SN L       +
Sbjct: 63  RSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 10/98 (10%), Positives = 27/98 (27%), Gaps = 5/98 (5%)

Query: 138 LTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSG----GIPEEISNLTNLIIIYL 193
           +  +D+    L        +  L    +   + +C ++      I   +     L  + L
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQ-CQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 194 GGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC 231
             N+L       + +  +     +    L+        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 11 NLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSG-SLSSIAGV--RLPNLEVLRM 66
          +++ L +   +L      ++   +   +V  + +  L+      I+      P L  L +
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 67 RSNNFCGTIPHFIFNASKLSLLELGDNSFSGF 98
          RSN       H +    +    ++   S    
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 212 LQGLSLADNKLEGSIPNNIC-RLTELYELDLGSNKFS----RSIPACFSNLASLRTLSLG 266
           +Q L +   +L  +    +   L +   + L     +    + I +      +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 267 SNELTSI 273
           SNEL  +
Sbjct: 64  SNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 251 PACFSNLASLRTLSLGSNELT-----SIPLTFWNLKDILYLNFSSNFLTGPLPLEI---- 301
                  + LR L L   +++     S+  T      +  L+ S+N L     L++    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 302 -ENLKVLVGIDFSVNNFSGVIPTTIGSLK 329
            +   +L  +      +S  +   + +L+
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 32  NVSTLKVFEVSNNSLSG-SLSSIAGV--RLPNLEVLRMRSNNFCGTIPHFIFNA-----S 83
             S L+V  +++  +S  S SS+A       +L  L + +N         +  +      
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 84  KLSLLELGDNSFSGFIPDTFGNLRNLN 110
            L  L L D  +S  + D    L    
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 27/111 (24%)

Query: 162 HSLEYFYMPNCNVSG----GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSL 217
             L   ++ +C+VS      +   +    +L  + L  N L  +  + L +         
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE--------- 419

Query: 218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP----ACFSNLASLRTLS 264
                  S+    C L    +L L    +S  +     A   +  SLR +S
Sbjct: 420 -------SVRQPGCLLE---QLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 8/46 (17%)

Query: 492 DRFSENNLIGRGGFGSVYKAR--------IQDGMEVAVKVFHLHCS 529
           DR      +G G FG V  A              +VAVK+     +
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT 58

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 493 RFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           R+     +G G F +V+ A+ + +   VA+K+    
Sbjct: 14  RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD 49

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 5e-05
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 492 DRFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHLHCSGAFK 533
           +R      IG G FG V++          + VA+K      S + +
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVR 52

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 498 NLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
             +G G FG V+  R   +G   A+KV    
Sbjct: 10  RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKE 40

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           +++     +GRG FG V++            K   + 
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK 41

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 492 DRFSENNLIGRGGFGSVYKAR----IQDGMEVAVKVFH 525
           + F    ++G G +G V+  R       G   A+KV  
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLK 61

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 493 RFSE-NNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527
           RF + +  IGRG F +VYK    +  +EVA       
Sbjct: 9   RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDR 45

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 497 NNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHCS-GAFKSFDVECN 540
           N +IGRG FG VY   + D     +  AVK  +     G    F  E  
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI 80

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 9e-05
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 486 ELCRATDRFS-ENNLIGRGGFGSVYKARIQ---DGMEVAVKVFH 525
           +L    D     +  +G G FGSV +   +     ++VA+KV  
Sbjct: 2   KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLK 45

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 499 LIGRGGFGSVYKAR-IQDGMEVAVKVFH 525
           ++G G  G V +    +   + A+K+  
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQ 46

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 492 DRFSENNLIGRGGFGSVYKA------RIQDGMEVAVKVFH 525
           +      ++G G FG V  A      +    ++VAVK+  
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLK 76

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 4/40 (10%)

Query: 492 DRFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHLH 527
                   +G G FG V +          + VAVK     
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPD 47

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 6/136 (4%)

Query: 254 FSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
           ++N    R L L   ++  I      L     ++FS N +          L+ L  +  +
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVN 71

Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQG-SIPYSIGDLISLKSLNLSNNN---LSGTI 369
            N    +      +L  L  L +  N L        +  L SL  L +  N         
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131

Query: 370 PVSLEKLSYLEDLNLS 385
              + K+  +  L+  
Sbjct: 132 LYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF 292
                ELDL   K    I    + L     +    NE+  +   F  L+ +  L  ++N 
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR 74

Query: 293 LTGPLPLEIENLKVLVGIDFSVNNFSGV-IPTTIGSLKGLQYLFVG---YNRLQGSIPYS 348
           +        + L  L  +  + N+   +     + SLK L YL +        +    Y 
Sbjct: 75  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134

Query: 349 IGDLISLKSLNLS 361
           I  +  ++ L+  
Sbjct: 135 IYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 348 SIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
              + +  + L+L    +   I      L   + ++ S N++
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 7/139 (5%)

Query: 8   NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67
           N      L L   K+  VI      +      + S+N +   L       L  L+ L + 
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPL--LRRLKTLLVN 71

Query: 68  SNNFCGTIPHFIFNASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDL 126
           +N  C            L+ L L +NS       D   +L++L  + +  N +T+     
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131

Query: 127 NFLSSLSNCKTLTYIDLSD 145
            ++  +     +  +D   
Sbjct: 132 LYV--IYKVPQVRVLDFQK 148

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 25/155 (16%)

Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL 299
           +L   +  + +    S        +L    L S P         + LN  S+     L +
Sbjct: 3   ELKPEQVEQ-LKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAAT-LRI 59

Query: 300 EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLN 359
             EN+  L+ ++ S N                             +   +    +LK LN
Sbjct: 60  IEENIPELLSLNLSNNRLYR----------------------LDDMSSIVQKAPNLKILN 97

Query: 360 LSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394
           LS N L     +   K   LE+L L  N L+    
Sbjct: 98  LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEG--SIPNNICRLT 234
               ++      +++    + +  ++ I    + +L  L+L++N+L     + + + +  
Sbjct: 33  RSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP 91

Query: 235 ELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
            L  L+L  N+              L  L L  N L+   
Sbjct: 92  NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 4/163 (2%)

Query: 228 NNICRLTELYELDL-GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL 286
                 TE  +++L G       + A  S L + + L+L +N +  I  +   ++++  L
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRIL 75

Query: 287 NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIP 346
           +   N +     L  + +   +   +   N    +      +                  
Sbjct: 76  SLGRNLIKKIENL--DAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEI 133

Query: 347 YSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389
             +  L  L+ L L+ N L      +     Y  ++      L
Sbjct: 134 DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	540
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	98.28
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	98.08
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	97.94
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	97.85
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	97.83
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	97.73
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	97.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.65
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	97.62
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	97.57
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	97.49
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	97.38
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	97.3
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	97.29
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	97.28
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	97.27
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	97.23
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	97.22
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	97.13
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	97.11
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	97.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.03
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	97.01
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	97.0
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.92
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	96.84
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	96.38

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.9e-32  Score=259.61  Aligned_cols=257  Identities=33%  Similarity=0.596  Sum_probs=226.3

Q ss_pred             cCcEEEccCCccee--cCChhccCCCCCCeeeccC-CccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeE
Q 045304          163 SLEYFYMPNCNVSG--GIPEEISNLTNLIIIYLGG-NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL  239 (540)
Q Consensus       163 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  239 (540)
                      +++.|+++++.+.|  .+|+.++++++|++|++++ |.++|.+|..++++++|++|++++|++.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46777777777765  5788888899999999986 78888888888899999999999999888888888888899999


Q ss_pred             EcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCC-cEEECCCCcccCCCccccccccCcceEEccccee
Q 045304          240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDI-LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNF  317 (540)
Q Consensus       240 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  317 (540)
                      +++.|.+.+.+|..+..++.++.+++++|.+.+ +|..+..+..+ +.+++++|++++..|..+..+..+ .++++.+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            999998888888889999999999999998886 88888777776 889999999999988888877554 799999999


Q ss_pred             eecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCC
Q 045304          318 SGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGG  397 (540)
Q Consensus       318 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~  397 (540)
                      .+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|+++|.+|..+..+++|+.|++++|+++|.+|..+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            99999999999999999999999997765 58889999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCcccccCCCCCCCCCCCCCCCC
Q 045304          398 SFGNFSAESFEGNELLCGSPNLRVPPC  424 (540)
Q Consensus       398 ~~~~~~~~~~~~n~~~c~~~~~~~~~~  424 (540)
                      .+..+...++.+|+.+||.|.   |+|
T Consensus       289 ~L~~L~~l~l~~N~~l~g~pl---p~c  312 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSPL---PAC  312 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTS---SCC
T ss_pred             cCCCCCHHHhCCCccccCCCC---CCC
Confidence            888999999999999999763   566

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=2.5e-28  Score=240.38  Aligned_cols=195  Identities=31%  Similarity=0.458  Sum_probs=162.3

Q ss_pred             CChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCC
Q 045304          178 IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNL  257 (540)
Q Consensus       178 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  257 (540)
                      .......+++++.+++++|.+++..|  +..+++|++|++++|.++. + +.+..+++|+.|++++|.+++..+  +..+
T Consensus       189 ~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~  262 (384)
T d2omza2         189 DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGL  262 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--cccc
Confidence            34567788899999999999886554  4567899999999998874 3 467888999999999999886543  7788


Q ss_pred             CCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCc
Q 045304          258 ASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVG  337 (540)
Q Consensus       258 ~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  337 (540)
                      ++|+.|++++|.+++++. +..++.++.+.+..|.+.+.  ..+..+..++.|++++|++++..  .+..+++|++|+++
T Consensus       263 ~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~  337 (384)
T d2omza2         263 TKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECC
T ss_pred             ccCCEeeccCcccCCCCc-cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECC
Confidence            999999999999988764 66788899999999998753  34778899999999999998653  37889999999999


Q ss_pred             CccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304          338 YNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN  387 (540)
Q Consensus       338 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  387 (540)
                      +|++++ ++ .+..+++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         338 NNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999984 44 58889999999999999997655  788999999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=2.6e-30  Score=246.90  Aligned_cols=250  Identities=31%  Similarity=0.484  Sum_probs=215.4

Q ss_pred             CCCEEECcCCCCCc--cCCccccccccccCcEEEccC-CcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCC
Q 045304          137 TLTYIDLSDNPLDG--ILPGTSVGNLSHSLEYFYMPN-CNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQ  213 (540)
Q Consensus       137 ~L~~L~l~~n~l~~--~~~~~~~~~l~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  213 (540)
                      +++.|+|+++.+.+  .+| ..++.+ ++|++|++++ |+++|.+|+.++++++|++|++++|++.+..+..+..+..|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp-~~l~~L-~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIP-SSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECC-GGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCC-hHHhcC-ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            56777787777776  356 677777 7888888876 678888888999999999999999999988888888889999


Q ss_pred             eeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCC-CEeeCCCCCCCC-CCccccCCCCCcEEECCCC
Q 045304          214 GLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL-RTLSLGSNELTS-IPLTFWNLKDILYLNFSSN  291 (540)
Q Consensus       214 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n  291 (540)
                      .++++.|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++ .|..+..+ ....+++..+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            99999999888899999999999999999999998898888887776 888999999887 55555555 4457999999


Q ss_pred             cccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCc
Q 045304          292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV  371 (540)
Q Consensus       292 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  371 (540)
                      ...+.+|..+..+..++.+++++|.+.+.+| .+..+++|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            9999999999999999999999999987665 578889999999999999999999999999999999999999999985


Q ss_pred             cccCCCCCCeEEcccCccee
Q 045304          372 SLEKLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       372 ~~~~~~~L~~l~l~~n~l~~  391 (540)
                       +..+++|+.+++++|+..+
T Consensus       287 -~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEE
T ss_pred             -cccCCCCCHHHhCCCcccc
Confidence             5788899999999998433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.9e-26  Score=223.73  Aligned_cols=328  Identities=28%  Similarity=0.401  Sum_probs=257.7

Q ss_pred             CCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304            8 NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSL   87 (540)
Q Consensus         8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~   87 (540)
                      .+.+|++|+++++.++..  +.+..+++|++|++++|.++ .++.  +.++++|++|++++|.+.+..  .++++++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--cccccccccc
Confidence            467899999999999853  46889999999999999998 5664  479999999999999998543  3889999999


Q ss_pred             EEccCCcccccCCccccCCCCCCEEECcCccccCCCCCc--------------cccccCCCCCCCCEEECcCCCCCccCC
Q 045304           88 LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDL--------------NFLSSLSNCKTLTYIDLSDNPLDGILP  153 (540)
Q Consensus        88 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------------~~~~~l~~l~~L~~L~l~~n~l~~~~~  153 (540)
                      |+++++.+++..+  ......+..+....+.+.......              .....+...+.........+.....  
T Consensus       115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  190 (384)
T d2omza2         115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--  190 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccc--
Confidence            9999998876533  344566677766665554321100              0112233444445555555544322  


Q ss_pred             ccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCC
Q 045304          154 GTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRL  233 (540)
Q Consensus       154 ~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l  233 (540)
                       .....+ ++++.+++++|.+++..|  +..+++|++|++++|.++. + ..+..+++|+.+++++|.+++..  .+..+
T Consensus       191 -~~~~~l-~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~  262 (384)
T d2omza2         191 -SVLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGL  262 (384)
T ss_dssp             -GGGGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTC
T ss_pred             -cccccc-cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--ccccc
Confidence             334444 789999999999886544  4667899999999999884 3 35788999999999999998644  37889


Q ss_pred             CCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcc
Q 045304          234 TELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS  313 (540)
Q Consensus       234 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  313 (540)
                      ++|++|+++++.+++..  .+..++.++.+.++.|.+++++ .+..+++++.|++++|++.+..  .+..+++|++|+++
T Consensus       263 ~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~  337 (384)
T d2omza2         263 TKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECC
T ss_pred             ccCCEeeccCcccCCCC--cccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECC
Confidence            99999999999998653  3778899999999999999865 4678899999999999998754  37889999999999


Q ss_pred             cceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCC
Q 045304          314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNN  363 (540)
Q Consensus       314 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  363 (540)
                      +|++++ ++ .+..+++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         338 NNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999985 44 68899999999999999997655  889999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=3.9e-25  Score=209.83  Aligned_cols=245  Identities=22%  Similarity=0.288  Sum_probs=125.1

Q ss_pred             CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304           11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL   90 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L   90 (540)
                      .++.++-++++++ .+|..+.  +++++|+|++|.++ .+|+..|..+++|++|++++|.+....|..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            3444454444454 3343332  34555555555554 444443345555555555555555444444445555555555


Q ss_pred             cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEcc
Q 045304           91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP  170 (540)
Q Consensus        91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~  170 (540)
                      ++|+++. +|..  ....++.|++.+|.+....     ...+.....+..++...+...                     
T Consensus        87 ~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~-----~~~~~~~~~~~~l~~~~n~~~---------------------  137 (305)
T d1xkua_          87 SKNQLKE-LPEK--MPKTLQELRVHENEITKVR-----KSVFNGLNQMIVVELGTNPLK---------------------  137 (305)
T ss_dssp             CSSCCSB-CCSS--CCTTCCEEECCSSCCCBBC-----HHHHTTCTTCCEEECCSSCCC---------------------
T ss_pred             cCCccCc-Cccc--hhhhhhhhhccccchhhhh-----hhhhhcccccccccccccccc---------------------
Confidence            5554442 2221  1233444444444433321     111222233333333332211                     


Q ss_pred             CCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc
Q 045304          171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI  250 (540)
Q Consensus       171 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  250 (540)
                         .....+..+..+++|+.+++.+|.+. .+|..  .+++|+.|++++|...+..+..|..++.++.|++++|.+.+..
T Consensus       138 ---~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~  211 (305)
T d1xkua_         138 ---SSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD  211 (305)
T ss_dssp             ---GGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred             ---ccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccc
Confidence               12223344555666666666666655 23322  2456666666666666666666666666666666666666666


Q ss_pred             CccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304          251 PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       251 ~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~  294 (540)
                      +..|..+++|++|++++|.++.+|..+..+++|++|+|++|+++
T Consensus       212 ~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccceeeecccccccccccccccccCCCEEECCCCccC
Confidence            66666666666666666666666666666666666666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.3e-24  Score=206.21  Aligned_cols=233  Identities=24%  Similarity=0.308  Sum_probs=167.3

Q ss_pred             CCCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcccc
Q 045304            1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF   80 (540)
Q Consensus         1 ~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~   80 (540)
                      ++|..+.  +++++|+|++|+++...+.+|.++++|++|++++|.+. .++...+..+++|++|++++|+++ .+|..+ 
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~-   98 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM-   98 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCS-BCCSSC-
T ss_pred             ccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCccC-cCccch-
Confidence            3677664  68999999999999666678999999999999999998 666666689999999999999998 455543 


Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccc
Q 045304           81 NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL  160 (540)
Q Consensus        81 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l  160 (540)
                       ...++.|.+.+|.+.+..+..+.....++.++...+.......   ....+..+++|+.+++++|.+... + ..   .
T Consensus        99 -~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~---~~~~~~~l~~L~~l~l~~n~l~~l-~-~~---~  169 (305)
T d1xkua_          99 -PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI---ENGAFQGMKKLSYIRIADTNITTI-P-QG---L  169 (305)
T ss_dssp             -CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB---CTTGGGGCTTCCEEECCSSCCCSC-C-SS---C
T ss_pred             -hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCC---CccccccccccCccccccCCcccc-C-cc---c
Confidence             4689999999999988777778888899999988876544322   334577788899999988877643 2 11   1


Q ss_pred             cccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEE
Q 045304          161 SHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD  240 (540)
Q Consensus       161 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  240 (540)
                      .++|+.|++.+|...+..+..+..++.++.|++++|.+.+..+..+.++++|++|+|++|.++ .+|..|..+++|++|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  248 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence            256666666666666666666666666666666666666555555556666666666666555 3455555555666666


Q ss_pred             cCCCCCcc
Q 045304          241 LGSNKFSR  248 (540)
Q Consensus       241 l~~n~l~~  248 (540)
                      |++|+++.
T Consensus       249 Ls~N~i~~  256 (305)
T d1xkua_         249 LHNNNISA  256 (305)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCccCc
Confidence            65555553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.6e-25  Score=206.31  Aligned_cols=207  Identities=27%  Similarity=0.271  Sum_probs=109.5

Q ss_pred             CCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcC-CCCCccccCccCCCCCCCCEeeCC
Q 045304          188 LIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG-SNKFSRSIPACFSNLASLRTLSLG  266 (540)
Q Consensus       188 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~  266 (540)
                      +++|+|++|+++...+..|.++++|++|++++|.+....+..+..++.+..++.. .+.+....+..|.++++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            4444444444443333344444444455544444444444444444444444432 233333334445555555555555


Q ss_pred             CCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccC
Q 045304          267 SNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI  345 (540)
Q Consensus       267 ~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  345 (540)
                      +|.+..++. .+...++|+.+++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|+.+++++|++++..
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            555544322 3334455555555555555444445555555666666666665555555666666666666666666555


Q ss_pred             CcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          346 PYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      |..|..+++|++|++++|.+.+..+..|..+++|+.+++++|++.+..+
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            6666666666666666666665555556666666666666666655443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.3e-24  Score=199.04  Aligned_cols=223  Identities=21%  Similarity=0.239  Sum_probs=131.7

Q ss_pred             EEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcC-
Q 045304           38 VFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN-  116 (540)
Q Consensus        38 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~-  116 (540)
                      .++.+++.++ .+|..+   .+++++|+|++|.++...+..|.++++|++|++++|.+.+..+..+..+..++.+.... 
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4456666666 667654   24567777777777755555677777777777777777766666666666666665543 


Q ss_pred             ccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCC
Q 045304          117 NYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGN  196 (540)
Q Consensus       117 n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  196 (540)
                      +.+...     -+..+.++++|++|+++.|.+...                          .+..+..+++|+.+++++|
T Consensus        91 ~~~~~l-----~~~~~~~l~~L~~L~l~~n~~~~~--------------------------~~~~~~~~~~L~~l~l~~N  139 (284)
T d1ozna_          91 AQLRSV-----DPATFHGLGRLHTLHLDRCGLQEL--------------------------GPGLFRGLAALQYLYLQDN  139 (284)
T ss_dssp             TTCCCC-----CTTTTTTCTTCCEEECTTSCCCCC--------------------------CTTTTTTCTTCCEEECCSS
T ss_pred             cccccc-----cchhhcccccCCEEecCCcccccc--------------------------cccccchhcccchhhhccc
Confidence            333332     223455555566666555554332                          2233444455555555555


Q ss_pred             ccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-
Q 045304          197 KLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-  275 (540)
Q Consensus       197 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-  275 (540)
                      .+++..+..|..+++|+.|++++|.+.+..+..|..+++|+++++++|++++..|..|..+++|++|++++|.+.+++. 
T Consensus       140 ~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             cccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc
Confidence            5554444555555566666666666655555555666666666666666665556666666666666666666665433 


Q ss_pred             cccCCCCCcEEECCCCcccC
Q 045304          276 TFWNLKDILYLNFSSNFLTG  295 (540)
Q Consensus       276 ~~~~l~~L~~L~L~~n~l~~  295 (540)
                      .+..+++|++|++++|.+..
T Consensus       220 ~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         220 ALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             HHTTCTTCCEEECCSSCEEC
T ss_pred             ccccccccCEEEecCCCCCC
Confidence            45555566666666665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-23  Score=192.68  Aligned_cols=202  Identities=23%  Similarity=0.215  Sum_probs=149.2

Q ss_pred             CCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEee
Q 045304          185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS  264 (540)
Q Consensus       185 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  264 (540)
                      ...+.+++.+++.++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|+++. ++ .++.+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            344555666666666 3555443  467777777777775555667777777777777777763 33 346677788888


Q ss_pred             CCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCccc
Q 045304          265 LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS  344 (540)
Q Consensus       265 l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  344 (540)
                      +++|+++.++..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..++.++.+++++|++++.
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            88887777777777777888888888877776677777778888888888888776677777788888888888888877


Q ss_pred             CCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceee
Q 045304          345 IPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGE  392 (540)
Q Consensus       345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~  392 (540)
                      .+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++.+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            7777888888888888888888 6777777788888888887776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.7e-23  Score=189.78  Aligned_cols=204  Identities=27%  Similarity=0.293  Sum_probs=180.9

Q ss_pred             cCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEE
Q 045304          207 SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL  286 (540)
Q Consensus       207 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L  286 (540)
                      .+...+.+++.++++++ .+|..+.  +++++|+|++|.+++..+..|..+++|+.|++++|+++.+|. +..+++|++|
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L   82 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTL   82 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEE
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccc
Confidence            45567777899999998 5787664  589999999999998777889999999999999999998874 4678999999


Q ss_pred             ECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304          287 NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS  366 (540)
Q Consensus       287 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  366 (540)
                      +|++|++.+ .+..+..+++|+.|++++|.+.+..+..+..+.++++|++++|.++...+..+..+++++.+++++|+++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            999999985 4667889999999999999999888888899999999999999999887888889999999999999999


Q ss_pred             cccCccccCCCCCCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCC
Q 045304          367 GTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGS  416 (540)
Q Consensus       367 ~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~  416 (540)
                      +..+..|..+++|+.|++++|+++ .+|.. .....++.+.+.||||.|+|
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            888888999999999999999998 67754 44567788999999999987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=2.6e-18  Score=165.77  Aligned_cols=301  Identities=26%  Similarity=0.346  Sum_probs=141.5

Q ss_pred             CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304           11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL   90 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L   90 (540)
                      ++++|+|+++.++ .+|+.   +++|++|++++|.++ .+|..    +.+|+.|++++|.++ .++..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            4566666666665 34532   345666666666665 55532    345666666665554 22211   123555555


Q ss_pred             cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEcc
Q 045304           91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP  170 (540)
Q Consensus        91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~  170 (540)
                      ++|.+.. +|. ++.+++|++|+++++.+....         .....+..+.+..+....                    
T Consensus       106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~---------~~~~~l~~l~~~~~~~~~--------------------  154 (353)
T d1jl5a_         106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLP---------DLPPSLEFIAAGNNQLEE--------------------  154 (353)
T ss_dssp             CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSS--------------------
T ss_pred             ccccccc-ccc-hhhhccceeeccccccccccc---------cccccccchhhccccccc--------------------
Confidence            5555542 232 345555555555555443321         112233344443332221                    


Q ss_pred             CCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc
Q 045304          171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI  250 (540)
Q Consensus       171 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  250 (540)
                              +..+..++.++.+++++|..... +.   .....+.+...++.+. .++ .+..++.|+.+++++|.... +
T Consensus       155 --------~~~l~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~  219 (353)
T d1jl5a_         155 --------LPELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-L  219 (353)
T ss_dssp             --------CCCCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred             --------cccccccccceeccccccccccc-cc---cccccccccccccccc-ccc-cccccccccccccccccccc-c
Confidence                    22344455556666665554421 11   1112233344333332 222 24455666666666655432 2


Q ss_pred             CccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccc-cCcceEEcccceeeecCccccccCC
Q 045304          251 PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENL-KVLVGIDFSVNNFSGVIPTTIGSLK  329 (540)
Q Consensus       251 ~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~  329 (540)
                      +.   ...++..+.+..+.+...+..   ...+...++..+.+.+.     ..+ ......++..+.+.+.    ...++
T Consensus       220 ~~---~~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~~----~~~~~  284 (353)
T d1jl5a_         220 PD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRSL----CDLPP  284 (353)
T ss_dssp             CS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSEE----CCCCT
T ss_pred             cc---ccccccccccccccccccccc---ccccccccccccccccc-----ccccchhcccccccCccccc----cccCC
Confidence            22   234556666666655543332   22344444444433211     111 1223344444444322    12345


Q ss_pred             CCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          330 GLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      +|++|++++|+++ .+|.   .+++|+.|++++|+++ .+|..   +++|+.|++++|+++ .+|
T Consensus       285 ~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp  340 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP  340 (353)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             CCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence            6666777766666 4443   2456666777776666 34432   345666777777665 344

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=1e-17  Score=161.46  Aligned_cols=299  Identities=30%  Similarity=0.354  Sum_probs=188.8

Q ss_pred             CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 045304           35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL  114 (540)
Q Consensus        35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  114 (540)
                      ++++|||+++.++ .+|+.    +++|++|++++|+++ .+|..   ..+|+.|++.+|+++. +++ +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence            5677777777776 56642    456777777777766 45543   3456666666666552 221 1  134666666


Q ss_pred             cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeecc
Q 045304          115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG  194 (540)
Q Consensus       115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  194 (540)
                      ++|.+...      + .+..+++|+.|+++++.+...                           +.   ....+..+.+.
T Consensus       106 ~~n~l~~l------p-~~~~l~~L~~L~l~~~~~~~~---------------------------~~---~~~~l~~l~~~  148 (353)
T d1jl5a_         106 SNNQLEKL------P-ELQNSSFLKIIDVDNNSLKKL---------------------------PD---LPPSLEFIAAG  148 (353)
T ss_dssp             CSSCCSSC------C-CCTTCTTCCEEECCSSCCSCC---------------------------CC---CCTTCCEEECC
T ss_pred             cccccccc------c-chhhhccceeecccccccccc---------------------------cc---ccccccchhhc
Confidence            66655542      1 234455555555555544322                           11   12445566666


Q ss_pred             CCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC
Q 045304          195 GNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP  274 (540)
Q Consensus       195 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip  274 (540)
                      .+...  ....+..++.++.+++.+|.... .+..   ....+.+....+.+. .++ .+..++.|+.+++++|....++
T Consensus       149 ~~~~~--~~~~l~~l~~l~~L~l~~n~~~~-~~~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~~  220 (353)
T d1jl5a_         149 NNQLE--ELPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP  220 (353)
T ss_dssp             SSCCS--SCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred             ccccc--ccccccccccceecccccccccc-cccc---ccccccccccccccc-ccc-cccccccccccccccccccccc
Confidence            55443  23456788899999999988764 2222   233456666665554 333 3677899999999999888776


Q ss_pred             ccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCC
Q 045304          275 LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIS  354 (540)
Q Consensus       275 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  354 (540)
                      ..   ..++..+.+..+.+.... .   ....+...++..+.+.+.. .   -.......++..+.+.+.    ...+++
T Consensus       221 ~~---~~~l~~~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~l~-~---l~~~~~~~~~~~~~~~~~----~~~~~~  285 (353)
T d1jl5a_         221 DL---PPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL----CDLPPS  285 (353)
T ss_dssp             SC---CTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE----CCCCTT
T ss_pred             cc---cccccccccccccccccc-c---ccccccccccccccccccc-c---ccchhcccccccCccccc----cccCCC
Confidence            54   356778888888776332 2   2345666777666655321 1   113445677777776633    344678


Q ss_pred             CCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCC
Q 045304          355 LKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELL  413 (540)
Q Consensus       355 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~  413 (540)
                      |++|++++|+++ .+|.   .+++|+.|++++|+++ .+|.  ...++..+++.+|+.-
T Consensus       286 L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~--~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         286 LEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCS
T ss_pred             CCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc--ccCCCCEEECcCCcCC
Confidence            999999999998 5664   3678999999999997 5664  3567888889998743

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=6.8e-19  Score=158.45  Aligned_cols=204  Identities=21%  Similarity=0.342  Sum_probs=115.9

Q ss_pred             CEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 045304           13 ELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGD   92 (540)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~   92 (540)
                      ..++++.+.+++..  .+.++.+|+.|++.+|.++ .++ .+ ..+++|++|++++|.+++..|  +.++++|+++++++
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hH-hcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence            34455555555432  3445666777777777666 453 23 466777777777766664322  56666666666666


Q ss_pred             CcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCC
Q 045304           93 NSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC  172 (540)
Q Consensus        93 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~  172 (540)
                      |.++. + ..+.++++|+.++++++.....       ..+...+.++.+.++.+.+...                     
T Consensus        95 n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~---------------------  144 (227)
T d1h6ua2          95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDV-------TPLAGLSNLQVLYLDLNQITNI---------------------  144 (227)
T ss_dssp             CCCSC-C-GGGTTCTTCCEEECTTSCCCCC-------GGGTTCTTCCEEECCSSCCCCC---------------------
T ss_pred             ccccc-c-cccccccccccccccccccccc-------chhccccchhhhhchhhhhchh---------------------
Confidence            66552 2 2355666666666665554432       1233444555555544444322                     


Q ss_pred             cceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCc
Q 045304          173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPA  252 (540)
Q Consensus       173 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~  252 (540)
                             ..+..+++|++|++++|.+....  .+.++++|++|++++|++++ ++ .+..+++|++|++++|++++..  
T Consensus       145 -------~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--  211 (227)
T d1h6ua2         145 -------SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--  211 (227)
T ss_dssp             -------GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--
T ss_pred             -------hhhccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--
Confidence                   12444556666666666655322  25566667777777766664 32 2666677777777777766432  


Q ss_pred             cCCCCCCCCEeeCC
Q 045304          253 CFSNLASLRTLSLG  266 (540)
Q Consensus       253 ~~~~l~~L~~L~l~  266 (540)
                      .++.+++|+.|+++
T Consensus       212 ~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         212 PLANTSNLFIVTLT  225 (227)
T ss_dssp             GGTTCTTCCEEEEE
T ss_pred             ccccCCCCCEEEee
Confidence            26667777777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.9e-21  Score=192.20  Aligned_cols=379  Identities=18%  Similarity=0.181  Sum_probs=223.3

Q ss_pred             CCCCEEeccCcccccCC-CccccCCCCCCEEEcccCcCcc----ccchhhhcCCCCCCEEEccCCccccc----CCcccc
Q 045304           10 RNLELLVLSHNKLVGVI-PTKVFNVSTLKVFEVSNNSLSG----SLSSIAGVRLPNLEVLRMRSNNFCGT----IPHFIF   80 (540)
Q Consensus        10 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~   80 (540)
                      .+|+.||+++|++++.. .+.+..++++++|+|++|.++.    .+...+ ..+++|+.|+|++|.++..    +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L-~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHH-hcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            36899999999998532 3345678999999999998873    223323 6889999999999988632    222222


Q ss_pred             -CCCCCCEEEccCCccccc----CCccccCCCCCCEEECcCccccCCCCCccccccC-CCCCCCCEEECcCCCCCccCCc
Q 045304           81 -NASKLSLLELGDNSFSGF----IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSL-SNCKTLTYIDLSDNPLDGILPG  154 (540)
Q Consensus        81 -~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~  154 (540)
                       ...+|++|++++|.+++.    ++..+..+++|++|++++|.+....... +...+ ......................
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhh-hhhcccccccccccccccccccchhhhc
Confidence             235799999999998754    4556788999999999999876421110 11111 1122233334333332211000


Q ss_pred             ---cccccccccCcEEEccCCcceec----CChhc-cCCCCCCeeeccCCccccc----cCccccCCCCCCeeeeeCccc
Q 045304          155 ---TSVGNLSHSLEYFYMPNCNVSGG----IPEEI-SNLTNLIIIYLGGNKLNGS----IPITLSKLQKLQGLSLADNKL  222 (540)
Q Consensus       155 ---~~~~~l~~~L~~L~l~~~~~~~~----~~~~l-~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~  222 (540)
                         ..+... ..++.+.++.+.....    ....+ ........+.+..+.+...    ....+...+.++.+++.+|.+
T Consensus       160 ~~~~~l~~~-~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         160 PLASVLRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             ccccccccc-cccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence               011111 4566666666554321    11111 1223445566666544321    112234556777777777754


Q ss_pred             cC-----cCCccccCCCCCCeEEcCCCCCccc----cCccCCCCCCCCEeeCCCCCCCC-----CCccc-cCCCCCcEEE
Q 045304          223 EG-----SIPNNICRLTELYELDLGSNKFSRS----IPACFSNLASLRTLSLGSNELTS-----IPLTF-WNLKDILYLN  287 (540)
Q Consensus       223 ~~-----~~p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~-----ip~~~-~~l~~L~~L~  287 (540)
                      ..     ..+........++.+++++|.+...    ....+...+.++.+++++|.++.     +...+ .....|+.++
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~  318 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  318 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             cccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence            32     1223334556778888887776532    22233456777888888877754     11111 2345678888


Q ss_pred             CCCCcccCCCccc----cccccCcceEEcccceeeec----Cccccc-cCCCCcEEeCcCccCccc----CCcccCCCCC
Q 045304          288 FSSNFLTGPLPLE----IENLKVLVGIDFSVNNFSGV----IPTTIG-SLKGLQYLFVGYNRLQGS----IPYSIGDLIS  354 (540)
Q Consensus       288 L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~  354 (540)
                      +++|.+.......    +....+|++|+|++|.+++.    ++..+. ..+.|++|+|++|.++..    +...+..+++
T Consensus       319 l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  398 (460)
T d1z7xw1         319 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  398 (460)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             ccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCC
Confidence            8888776443222    34456788888888887643    222332 356688888888888642    3445566778


Q ss_pred             CCEEECCCCcCccccCcc----cc-CCCCCCeEEcccCccee
Q 045304          355 LKSLNLSNNNLSGTIPVS----LE-KLSYLEDLNLSFNKLAG  391 (540)
Q Consensus       355 L~~L~l~~n~l~~~~~~~----~~-~~~~L~~l~l~~n~l~~  391 (540)
                      |++|++++|+++......    +. ....|+.+++.+|.+..
T Consensus       399 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            888888888887432222    22 33468888888887653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.8e-18  Score=155.30  Aligned_cols=225  Identities=18%  Similarity=0.186  Sum_probs=135.0

Q ss_pred             cCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccC-CccccCCCC
Q 045304            6 IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTI-PHFIFNASK   84 (540)
Q Consensus         6 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~   84 (540)
                      .+.|. .+.++.++.+++ .+|..+.  +++++|++++|.++ .+|...|.++++|++|++++|.+...+ +..|.+++.
T Consensus         5 ~C~C~-~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1           5 ICHCS-NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             SEEEC-SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             cCCCc-CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccc
Confidence            34443 367888888888 6666553  57899999999887 788777788999999999998877544 446778888


Q ss_pred             CCEEEccC-CcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccccc
Q 045304           85 LSLLELGD-NSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS  163 (540)
Q Consensus        85 L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~  163 (540)
                      ++++.+.. |.+....+..|.++++|+++++.+|.+.....    ...+..+..+..+...++.+....+ ..+..+.. 
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~----~~~~~~l~~l~~~~~~n~~l~~i~~-~~~~~~~~-  153 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINIHTIER-NSFVGLSF-  153 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC----CTTTCBSSCEEEEEESCTTCCEECT-TSSTTSBS-
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccc----ccccccccccccccccccccccccc-cccccccc-
Confidence            88888754 56766677778888888888888887765421    1123334444444444444443322 22222222 


Q ss_pred             CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCee-eeeCccccCcCCccccCCCCCCeEEcC
Q 045304          164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL-SLADNKLEGSIPNNICRLTELYELDLG  242 (540)
Q Consensus       164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L-~l~~n~~~~~~p~~~~~l~~L~~L~l~  242 (540)
                                             .++.|++++|+++...+..+ ...+++.+ ++.+|.++...+..|.++++|++|+++
T Consensus       154 -----------------------~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls  209 (242)
T d1xwdc1         154 -----------------------ESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS  209 (242)
T ss_dssp             -----------------------SCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECT
T ss_pred             -----------------------cceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECC
Confidence                                   34455555555553322222 22333333 334455553333345666666666666


Q ss_pred             CCCCccccCccCCCCCCCCEeeC
Q 045304          243 SNKFSRSIPACFSNLASLRTLSL  265 (540)
Q Consensus       243 ~n~l~~~~~~~~~~l~~L~~L~l  265 (540)
                      +|+++...+..|.++++|+.+++
T Consensus       210 ~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         210 RTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TSCCCCCCSSSCTTCCEEESSSE
T ss_pred             CCcCCccCHHHHcCCcccccCcC
Confidence            66666444444555555554444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.2e-17  Score=150.03  Aligned_cols=187  Identities=24%  Similarity=0.336  Sum_probs=103.9

Q ss_pred             CCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEee
Q 045304          185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS  264 (540)
Q Consensus       185 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  264 (540)
                      +.+|+.|++.+|.++. ++ .+..+++|++|++++|.+.+..|  +..+++|+++++++|.++. + ..+..+++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccc
Confidence            3444555555554442 22 24455555555555555543221  4555555555555555442 2 2244555555555


Q ss_pred             CCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCccc
Q 045304          265 LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS  344 (540)
Q Consensus       265 l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  344 (540)
                      ++++....++. +...+.+..+.++++.+....  .+..+++|+.|++++|.+.+..  .+.++++|++|++++|++++.
T Consensus       114 l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccch-hccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCC
Confidence            55555544322 334455556666665554322  2455566666777666665322  366677777777777777642


Q ss_pred             CCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEccc
Q 045304          345 IPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF  386 (540)
Q Consensus       345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~  386 (540)
                       + .++.+++|++|++++|++++..  .+..+++|+.|++++
T Consensus       189 -~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 -S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             -h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence             2 3667777777777777777443  266777777777753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.3e-18  Score=154.29  Aligned_cols=217  Identities=18%  Similarity=0.171  Sum_probs=132.4

Q ss_pred             EEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcC-CccccCCCCCCeEEcCC-
Q 045304          166 YFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSI-PNNICRLTELYELDLGS-  243 (540)
Q Consensus       166 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~-  243 (540)
                      .++.++..++ .+|+.+.  +++++|++++|.++...+..|.++++|++|++++|.+...+ +..|..+++++++++.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            3444444443 3444332  35666677766666444445666777777777776665433 33566666777766543 


Q ss_pred             CCCccccCccCCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEEECCCCcccCCCcccccccc-CcceEEcccceeeec
Q 045304          244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLTGPLPLEIENLK-VLVGIDFSVNNFSGV  320 (540)
Q Consensus       244 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~  320 (540)
                      |.+....+..|..+++|+.+++++|.+...+.  .+..+..+..+...++.+....+..+..+. .++.+++++|+++..
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            45555566666677777777777776665443  233445555555566666544455555543 677788888888755


Q ss_pred             CccccccCCCCcEE-eCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEccc
Q 045304          321 IPTTIGSLKGLQYL-FVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF  386 (540)
Q Consensus       321 ~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~  386 (540)
                      .+..+. ..+++++ .+++|.++...+..|.++++|++|++++|+++...+..|.+++.|+.+++.+
T Consensus       169 ~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         169 HNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            444443 4454444 5677778754455678888888888888888855555677777666666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.7e-17  Score=146.86  Aligned_cols=180  Identities=21%  Similarity=0.281  Sum_probs=121.3

Q ss_pred             eccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCC
Q 045304          192 YLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT  271 (540)
Q Consensus       192 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  271 (540)
                      .+..+.+++.++.  ..+.+|++|++++|.+... + .+..+++|++|++++|++++..  .++.+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            3444444443332  2345667777777766632 2 3566777777777777776533  2566777777777777777


Q ss_pred             CCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304          272 SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD  351 (540)
Q Consensus       272 ~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  351 (540)
                      ++| .+..+++|+.|++++|.+..  ...+..++.++.+++++|.+++  +..+..+++|+.+++++|.+++. + .+.+
T Consensus       104 ~l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~  176 (210)
T d1h6ta2         104 DLS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAG  176 (210)
T ss_dssp             CGG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred             ccc-cccccccccccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccC
Confidence            766 46667777777777777653  2346677778888888887764  33466778888888888888753 2 3778


Q ss_pred             CCCCCEEECCCCcCccccCccccCCCCCCeEEccc
Q 045304          352 LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF  386 (540)
Q Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~  386 (540)
                      +++|+.|++++|+++. +| .+..+++|+.|++++
T Consensus       177 l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            8888888888888874 44 577888888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=8.4e-18  Score=146.70  Aligned_cols=135  Identities=24%  Similarity=0.308  Sum_probs=118.7

Q ss_pred             CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304           11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL   90 (540)
Q Consensus        11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L   90 (540)
                      +.+.++.++++++ .+|..+.  +++++|+|++|.+++.++...|..+++|+.|++++|.+....+..+..+++|++|+|
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            4578999999999 6777653  789999999999987788888889999999999999999888999999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCC
Q 045304           91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP  153 (540)
Q Consensus        91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  153 (540)
                      ++|++++..+..|.++++|++|+|++|.++..+     +..|..+++|++++|++|.+.....
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~-----~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-----PGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-----TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccC-----HHHhcCCcccccccccccccccccc
Confidence            999999888889999999999999999999863     3558889999999999998876533

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=5.8e-18  Score=147.74  Aligned_cols=175  Identities=22%  Similarity=0.248  Sum_probs=128.8

Q ss_pred             CeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CC-ccccCCCCCcEEECCCCcccCCCccccccccCcceEEccc
Q 045304          237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV  314 (540)
Q Consensus       237 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  314 (540)
                      +.++.++++++ .+|..+.  +++++|+|++|.++. ++ ..|..+++|+.|+|++|.+.+..+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            56788888887 5666553  678888888888876 43 3567788888888888888888888888888888888888


Q ss_pred             ceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304          315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP  394 (540)
Q Consensus       315 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  394 (540)
                      |++++..+.+|.++++|++|+|++|++++..+.+|..+++|++|+|++|.+....+..+ -...++...+..+.+.+..|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCC
Confidence            88887778888888888888888888887777888888888888888888774432211 11234555666677776666


Q ss_pred             CCCCCCCCCcccccCCCCCCCCC
Q 045304          395 RGGSFGNFSAESFEGNELLCGSP  417 (540)
Q Consensus       395 ~~~~~~~~~~~~~~~n~~~c~~~  417 (540)
                      .  .+......++..|...|.++
T Consensus       167 ~--~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         167 S--KVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             T--TTTTSBGGGSCTTTCCCCCC
T ss_pred             h--hhcCCEeeecCHhhCcCCCC
Confidence            3  34455556677777777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.9e-17  Score=144.55  Aligned_cols=165  Identities=23%  Similarity=0.316  Sum_probs=110.2

Q ss_pred             CCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEee
Q 045304          185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS  264 (540)
Q Consensus       185 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  264 (540)
                      +.+|++|++++|.++.. + .+..+++|++|++++|.+++. + .++.+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccc
Confidence            44566666666666532 2 255666777777777766643 2 25666777777777777664 33 366677777777


Q ss_pred             CCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCccc
Q 045304          265 LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS  344 (540)
Q Consensus       265 l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  344 (540)
                      +++|.+..++ .+..++.++.+++++|.+.+  +..+..+++|+.+++++|++++. + .+..+++|++|++++|.++. 
T Consensus       119 l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-  192 (210)
T d1h6ta2         119 LEHNGISDIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-  192 (210)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-
T ss_pred             cccccccccc-cccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-
Confidence            7777766654 35566777777777777653  23456677888888888887753 2 37778888888888888874 


Q ss_pred             CCcccCCCCCCCEEECCC
Q 045304          345 IPYSIGDLISLKSLNLSN  362 (540)
Q Consensus       345 ~~~~~~~l~~L~~L~l~~  362 (540)
                      ++ .+.++++|++|+|++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            44 578888888888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.5e-16  Score=139.57  Aligned_cols=176  Identities=25%  Similarity=0.406  Sum_probs=112.0

Q ss_pred             eccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCC
Q 045304          192 YLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT  271 (540)
Q Consensus       192 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  271 (540)
                      .++.+.+++.++  ...++++++|++++|.+.. + ..+..+++|++|++++|++++..+  ++.+++|+.|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            344444443332  2345566666666666653 2 235566677777777776664332  666777777777777666


Q ss_pred             CCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304          272 SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD  351 (540)
Q Consensus       272 ~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  351 (540)
                      .++. +.+++.|+.|++++|.....  ..+..+++|+.|++++|.+.. + ..+..+++|++|++.+|++++..  .+++
T Consensus        98 ~~~~-l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~  170 (199)
T d2omxa2          98 DITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLAN  170 (199)
T ss_dssp             CCGG-GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             cccc-cccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccC
Confidence            6653 56667777777777766543  235667777777777777753 2 24667778888888888877532  3677


Q ss_pred             CCCCCEEECCCCcCccccCccccCCCCCCeE
Q 045304          352 LISLKSLNLSNNNLSGTIPVSLEKLSYLEDL  382 (540)
Q Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l  382 (540)
                      +++|++|++++|++++ ++ .+..+++|+.|
T Consensus       171 l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         171 LTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            8888888888888774 33 46677777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-19  Score=182.14  Aligned_cols=351  Identities=15%  Similarity=0.096  Sum_probs=223.8

Q ss_pred             cCCCCCCCEEeccCccccc----CCCccccCCCCCCEEEcccCcCccc----cchhhhcCCCCCCEEEccCCccccc---
Q 045304            6 IGNLRNLELLVLSHNKLVG----VIPTKVFNVSTLKVFEVSNNSLSGS----LSSIAGVRLPNLEVLRMRSNNFCGT---   74 (540)
Q Consensus         6 ~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~---   74 (540)
                      +..+++++.|+|++|.++.    .+...+..+++|++|+|++|.++..    +.........+|++|++++|.++..   
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            4567899999999999873    3455678999999999999998632    1222212345899999999998743   


Q ss_pred             -CCccccCCCCCCEEEccCCcccccCCccc---------------------------------cCCCCCCEEECcCcccc
Q 045304           75 -IPHFIFNASKLSLLELGDNSFSGFIPDTF---------------------------------GNLRNLNKVTLYNNYLT  120 (540)
Q Consensus        75 -~~~~l~~l~~L~~L~L~~n~~~~~~~~~~---------------------------------~~l~~L~~L~l~~n~~~  120 (540)
                       ++..+..+++|++|++++|.++......+                                 .....++.++++++...
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~  182 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  182 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             cccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccc
Confidence             45567889999999999998764211111                                 11234444544444322


Q ss_pred             CCCCCccccccC-CCCCCCCEEECcCCCCCccCCc---cccccccccCcEEEccCCccee-----cCChhccCCCCCCee
Q 045304          121 SSTSDLNFLSSL-SNCKTLTYIDLSDNPLDGILPG---TSVGNLSHSLEYFYMPNCNVSG-----GIPEEISNLTNLIII  191 (540)
Q Consensus       121 ~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L  191 (540)
                      ...... ....+ ........+++..+.+...-..   ..+... ..++.+.+.+|.+..     ...........++.+
T Consensus       183 ~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l  260 (460)
T d1z7xw1         183 EAGVRV-LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL  260 (460)
T ss_dssp             HHHHHH-HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cccccc-cccccccccccccccccccccccchhhhccccccccc-ccccccchhhccccccccchhhccccccccccccc
Confidence            110000 00000 1122345566665544321000   111222 578899998887642     223334556789999


Q ss_pred             eccCCccccc----cCccccCCCCCCeeeeeCccccCcCCccc-----cCCCCCCeEEcCCCCCccccC----ccCCCCC
Q 045304          192 YLGGNKLNGS----IPITLSKLQKLQGLSLADNKLEGSIPNNI-----CRLTELYELDLGSNKFSRSIP----ACFSNLA  258 (540)
Q Consensus       192 ~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~~----~~~~~l~  258 (540)
                      ++++|.+...    ....+...+.++.+++++|.+.......+     .....|+.+++++|.++....    ..+...+
T Consensus       261 ~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~  340 (460)
T d1z7xw1         261 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR  340 (460)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccccccccc
Confidence            9999987643    22345567889999999998763222111     234679999999998875432    2334567


Q ss_pred             CCCEeeCCCCCCCC-----CCcccc-CCCCCcEEECCCCcccCC----CccccccccCcceEEcccceeeecCcccc---
Q 045304          259 SLRTLSLGSNELTS-----IPLTFW-NLKDILYLNFSSNFLTGP----LPLEIENLKVLVGIDFSVNNFSGVIPTTI---  325 (540)
Q Consensus       259 ~L~~L~l~~n~l~~-----ip~~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---  325 (540)
                      +|+.|+|++|.+++     ++..+. ..+.|++|+|++|.++..    ++..+..+++|++|+|++|+++......+   
T Consensus       341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~  420 (460)
T d1z7xw1         341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES  420 (460)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred             chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH
Confidence            89999999999874     333343 467799999999998743    44556778999999999999976433333   


Q ss_pred             -c-cCCCCcEEeCcCccCcccCCccc----CCCCCCCEE
Q 045304          326 -G-SLKGLQYLFVGYNRLQGSIPYSI----GDLISLKSL  358 (540)
Q Consensus       326 -~-~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L  358 (540)
                       . +...|+.|++.+|.+.......+    ...++|+.|
T Consensus       421 l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence             2 33579999999999875443332    234555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.2e-16  Score=137.34  Aligned_cols=97  Identities=29%  Similarity=0.443  Sum_probs=41.0

Q ss_pred             CCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEE
Q 045304          255 SNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYL  334 (540)
Q Consensus       255 ~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  334 (540)
                      ..+++|+.|++++|....++ .+..+++|+.|++++|++.. + +.+..+++|+.|++++|++++..  .+..+++|++|
T Consensus       103 ~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L  177 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERL  177 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             cccccccccccccccccccc-ccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEE
Confidence            33444444444444333322 12333444444444444331 1 12344444444444444444321  24455555555


Q ss_pred             eCcCccCcccCCcccCCCCCCCEE
Q 045304          335 FVGYNRLQGSIPYSIGDLISLKSL  358 (540)
Q Consensus       335 ~l~~n~l~~~~~~~~~~l~~L~~L  358 (540)
                      ++++|++++ ++ .++.+++|+.|
T Consensus       178 ~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ECCCCCCCC-Cc-cccCCCCCCcC
Confidence            555555543 22 24445555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.9e-17  Score=151.08  Aligned_cols=128  Identities=17%  Similarity=0.194  Sum_probs=71.5

Q ss_pred             CEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCccccc-CCccccCCCCCCEEEcc
Q 045304           13 ELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGT-IPHFIFNASKLSLLELG   91 (540)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~   91 (540)
                      +.|||+++.+.......+.. ..+..+.++.......+.. . ....+|++||+++|.++.. +...+..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~-~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-h-ccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            36777777664222211111 2345566655544322222 1 2456777777777766533 33445667777777777


Q ss_pred             CCcccccCCccccCCCCCCEEECcCcc-ccCCCCCccccccCCCCCCCCEEECcCCC
Q 045304           92 DNSFSGFIPDTFGNLRNLNKVTLYNNY-LTSSTSDLNFLSSLSNCKTLTYIDLSDNP  147 (540)
Q Consensus        92 ~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~l~~L~~L~l~~n~  147 (540)
                      +|.+++..+..++.+++|++|+++++. ++..    .+.....++++|++|++++|.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~----~l~~l~~~~~~L~~L~ls~c~  132 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----ALQTLLSSCSRLDELNLSWCF  132 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----HHHHHHHHCTTCCEEECCCCT
T ss_pred             ccCCCcHHHHHHhcCCCCcCcccccccccccc----ccchhhHHHHhcccccccccc
Confidence            777766666667777777777777643 3211    011223456677777777653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.2e-16  Score=143.50  Aligned_cols=130  Identities=16%  Similarity=0.192  Sum_probs=90.4

Q ss_pred             CCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 045304           12 LELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELG   91 (540)
Q Consensus        12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~   91 (540)
                      +..+.++........ .......+|++||++++.+++.....++..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            455666665554322 3344667899999999988755555566899999999999999887778888899999999999


Q ss_pred             CC-ccccc-CCccccCCCCCCEEECcCcc-ccCCCCCccccccC-CCCCCCCEEECcCC
Q 045304           92 DN-SFSGF-IPDTFGNLRNLNKVTLYNNY-LTSSTSDLNFLSSL-SNCKTLTYIDLSDN  146 (540)
Q Consensus        92 ~n-~~~~~-~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l-~~l~~L~~L~l~~n  146 (540)
                      +| .++.. +...+..+++|++|+++++. ++...    +...+ ..+++|+.|+++++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~----~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH----VQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH----HHHHHHHSCTTCCEEECCSC
T ss_pred             ccccccccccchhhHHHHhcccccccccccccccc----chhhhcccccccchhhhccc
Confidence            86 45432 22234578999999999864 32210    11112 23467888888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4e-15  Score=124.87  Aligned_cols=132  Identities=20%  Similarity=0.195  Sum_probs=77.0

Q ss_pred             ccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 045304            5 EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASK   84 (540)
Q Consensus         5 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~   84 (540)
                      .|.++.++++|+|++|+++ .++..+..+++|+.|++++|.++ .++.  +..+++|++|++++|.++...+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccCC--cccCcchhhhhcccccccCCCccccccccc
Confidence            3556666777777777776 34555566677777777777766 4432  246667777777777766444444456666


Q ss_pred             CCEEEccCCcccccC-CccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEE
Q 045304           85 LSLLELGDNSFSGFI-PDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYID  142 (540)
Q Consensus        85 L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~  142 (540)
                      |++|++++|.++... ...+..+++|++|++++|.++..+..  ....+..+++|++||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~--r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY--RLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH--HHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccch--HHHHHHHCCCcCeeC
Confidence            777777776665321 13455666666666666666543210  011244455566555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-14  Score=121.21  Aligned_cols=125  Identities=18%  Similarity=0.092  Sum_probs=61.9

Q ss_pred             CCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeC
Q 045304          257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV  336 (540)
Q Consensus       257 l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  336 (540)
                      +..++.|+|++|+++.++..+..+++|+.|+|++|.+...  +.+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            3344444444444444433333344444444444444421  12444555555555555555444444455566666666


Q ss_pred             cCccCcccCC-cccCCCCCCCEEECCCCcCcccc---CccccCCCCCCeEE
Q 045304          337 GYNRLQGSIP-YSIGDLISLKSLNLSNNNLSGTI---PVSLEKLSYLEDLN  383 (540)
Q Consensus       337 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~l~  383 (540)
                      ++|+++.... ..+..+++|++|++++|+++...   +..+..+++|+.||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6666553211 34556666666666666665221   11345566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3e-14  Score=113.44  Aligned_cols=104  Identities=23%  Similarity=0.259  Sum_probs=77.7

Q ss_pred             CEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 045304           13 ELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGD   92 (540)
Q Consensus        13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~   92 (540)
                      |+|+|++|+++ .++ .+..+++|++|++++|.++ .+|..+ ..+++|+.|++++|.+++ +| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~-~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhh-hhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            57888888887 444 4788888888888888887 677655 678888888888888874 33 477788888888888


Q ss_pred             CcccccC-CccccCCCCCCEEECcCccccCC
Q 045304           93 NSFSGFI-PDTFGNLRNLNKVTLYNNYLTSS  122 (540)
Q Consensus        93 n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~  122 (540)
                      |.++... ...++.+++|++|++++|.++..
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            8877543 24567777888888888777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=1.3e-15  Score=145.93  Aligned_cols=42  Identities=7%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             ccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECcCcc
Q 045304           77 HFIFNASKLSLLELGDNSFSGF----IPDTFGNLRNLNKVTLYNNY  118 (540)
Q Consensus        77 ~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~  118 (540)
                      ..+.+..+|++|+|++|.+...    +...+...++|+.++++++.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   70 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence            3445556666666666665432    22234445555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=2.7e-15  Score=143.65  Aligned_cols=193  Identities=20%  Similarity=0.211  Sum_probs=108.9

Q ss_pred             cCCCCCCEEEccCCccccc----CCccccCCCCCCEEECcCccccCCCCCc--------cccccCCCCCCCCEEECcCCC
Q 045304           80 FNASKLSLLELGDNSFSGF----IPDTFGNLRNLNKVTLYNNYLTSSTSDL--------NFLSSLSNCKTLTYIDLSDNP  147 (540)
Q Consensus        80 ~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------~~~~~l~~l~~L~~L~l~~n~  147 (540)
                      ..+++|++|++++|.++..    +...+..+++|++|++++|.+.......        .........+.|+.+++++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            3445555666655555432    1222334555666666555443210000        000011234566666666665


Q ss_pred             CCccCCc---cccccccccCcEEEccCCcceec-----CChhccCCCCCCeeeccCCccccc----cCccccCCCCCCee
Q 045304          148 LDGILPG---TSVGNLSHSLEYFYMPNCNVSGG-----IPEEISNLTNLIIIYLGGNKLNGS----IPITLSKLQKLQGL  215 (540)
Q Consensus       148 l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L  215 (540)
                      +......   ..+... ..++.|++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|
T Consensus       170 i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             ccccccccccchhhhh-hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            5422110   112222 4677777777766431     334566778888888888887532    33456778888889


Q ss_pred             eeeCccccCcCC----cccc--CCCCCCeEEcCCCCCccc----cCccC-CCCCCCCEeeCCCCCCCCC
Q 045304          216 SLADNKLEGSIP----NNIC--RLTELYELDLGSNKFSRS----IPACF-SNLASLRTLSLGSNELTSI  273 (540)
Q Consensus       216 ~l~~n~~~~~~p----~~~~--~l~~L~~L~l~~n~l~~~----~~~~~-~~l~~L~~L~l~~n~l~~i  273 (540)
                      ++++|.+++.-.    ..+.  ..+.|++|++++|.++..    +...+ .++++|+.|++++|.+...
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            988888764322    2222  236789999999988643    22233 2567899999999988763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.1e-13  Score=110.07  Aligned_cols=55  Identities=24%  Similarity=0.313  Sum_probs=25.1

Q ss_pred             eEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304          238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       238 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~  294 (540)
                      .|++++|+++ .++ .+..+++|++|++++|.++.+|..+..+++|+.|++++|.++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccc
Confidence            3455555554 222 244444455555555544444444444444444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=2e-14  Score=124.97  Aligned_cols=110  Identities=25%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             ccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCc
Q 045304          228 NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVL  307 (540)
Q Consensus       228 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  307 (540)
                      ..+..+++|++|+|++|+++. ++ .+..+++|+.|++++|.++.+|.....+++|+.|++++|+++..  ..+..+++|
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L  117 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNL  117 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccccccccccccccccccccccccccc--ccccccccc
Confidence            344455555555555555542 22 24455555555555555555443333333455555555544421  123444444


Q ss_pred             ceEEcccceeeecCc-cccccCCCCcEEeCcCccC
Q 045304          308 VGIDFSVNNFSGVIP-TTIGSLKGLQYLFVGYNRL  341 (540)
Q Consensus       308 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l  341 (540)
                      +.|++++|.++.... ..+..+++|+.|++++|.+
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCcc
Confidence            445554444442211 2334444444444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=3.3e-14  Score=123.64  Aligned_cols=130  Identities=20%  Similarity=0.301  Sum_probs=101.9

Q ss_pred             cCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCC
Q 045304          250 IPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLK  329 (540)
Q Consensus       250 ~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  329 (540)
                      ++..+..+++|++|++++|.++.++ .+..+++|++|+|++|.+. .++.....++.|+.|++++|.++..  ..+..++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccc
Confidence            4556778899999999999999886 5788899999999999987 4555556667899999999998853  3477788


Q ss_pred             CCcEEeCcCccCcccCC-cccCCCCCCCEEECCCCcCccccCcc----------ccCCCCCCeEE
Q 045304          330 GLQYLFVGYNRLQGSIP-YSIGDLISLKSLNLSNNNLSGTIPVS----------LEKLSYLEDLN  383 (540)
Q Consensus       330 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~~~~L~~l~  383 (540)
                      +|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99999999999874322 46788899999999999887554432          45678888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.1e-12  Score=103.96  Aligned_cols=106  Identities=19%  Similarity=0.120  Sum_probs=71.0

Q ss_pred             CCeeeccCCccccccCccccCCCCCCeeeeeCcc-ccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCC
Q 045304          188 LIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNK-LEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLG  266 (540)
Q Consensus       188 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  266 (540)
                      .+.++..++.+. ..|..+..+++|++|++.+|+ ++...+..|.++++|+.|+|++|+++...+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            445666666555 345556666777777776553 654445567777777777777777776667777777777777777


Q ss_pred             CCCCCCCCccccCCCCCcEEECCCCccc
Q 045304          267 SNELTSIPLTFWNLKDILYLNFSSNFLT  294 (540)
Q Consensus       267 ~n~l~~ip~~~~~l~~L~~L~L~~n~l~  294 (540)
                      +|+++.+|.......+|+.|+|++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccccccccccCCCccc
Confidence            7777777765555556777777777663

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.6e-11  Score=100.48  Aligned_cols=106  Identities=17%  Similarity=0.111  Sum_probs=52.4

Q ss_pred             CCCEeeCCCCCCCCCCccccCCCCCcEEECCCCc-ccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCc
Q 045304          259 SLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF-LTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVG  337 (540)
Q Consensus       259 ~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  337 (540)
                      ....++.+++.+..+|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+++...+.+|..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            3445666666666666555555556666554442 443334445555555555555555554444455555555555555


Q ss_pred             CccCcccCCcccCCCCCCCEEECCCCcC
Q 045304          338 YNRLQGSIPYSIGDLISLKSLNLSNNNL  365 (540)
Q Consensus       338 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l  365 (540)
                      +|+++...+..+ ...+|+.|+|++|.+
T Consensus        89 ~N~l~~l~~~~~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALESLSWKTV-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCSCCCSTTT-CSCCCCEEECCSSCC
T ss_pred             CCCCcccChhhh-ccccccccccCCCcc
Confidence            555542222222 222344444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.7e-08  Score=83.78  Aligned_cols=12  Identities=50%  Similarity=0.601  Sum_probs=5.3

Q ss_pred             CCEEECCCCcCc
Q 045304          355 LKSLNLSNNNLS  366 (540)
Q Consensus       355 L~~L~l~~n~l~  366 (540)
                      |+.|++++|++.
T Consensus       117 L~~L~L~~Npl~  128 (162)
T d1koha1         117 LEELWLDGNSLS  128 (162)
T ss_dssp             CSSCCCTTSTTS
T ss_pred             cceeecCCCCcC
Confidence            444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.4e-08  Score=81.86  Aligned_cols=69  Identities=23%  Similarity=0.217  Sum_probs=42.2

Q ss_pred             ccccCCCCCCeEEcCCCCCccc--cCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCC
Q 045304          228 NNICRLTELYELDLGSNKFSRS--IPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGP  296 (540)
Q Consensus       228 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~  296 (540)
                      ..+..+++|++|+|++|+++..  ++..+..+++|+.|++++|.++.++. .+.....|+.|++++|.+...
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            3344567777777777777643  23345566777777777777777654 223344566666666666543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=7.9e-08  Score=88.45  Aligned_cols=60  Identities=25%  Similarity=0.464  Sum_probs=45.7

Q ss_pred             ccccHHHHHHHhccCCcc---------CeeccCCCCcEEEEEec-CC---CEEEEEEeccccC-Ccchhhhhhc
Q 045304          480 RRFSYLELCRATDRFSEN---------NLIGRGGFGSVYKARIQ-DG---MEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       480 ~~~~~~~l~~at~~f~~~---------~~ig~G~~G~Vykg~l~-~g---~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      ..++|+|+.+||.+|+.+         ++||+|+||+||+|+.. +|   ..||||++..... +..++|.+|+
T Consensus         5 d~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   78 (299)
T d1jpaa_           5 DPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEA   78 (299)
T ss_dssp             CGGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHH
Confidence            357889999999988753         68999999999999984 23   3699999965432 3346788887

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=5.2e-07  Score=81.63  Aligned_cols=46  Identities=24%  Similarity=0.318  Sum_probs=37.0

Q ss_pred             cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||+||+|++.+++.||||++..... ..++|.+|+
T Consensus        14 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~E~   59 (272)
T d1qpca_          14 TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEA   59 (272)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHH
T ss_pred             HeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC-CHHHHHHHH
Confidence            3444577999999999999998888999999975443 356788886

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.94  E-value=6.3e-07  Score=82.45  Aligned_cols=53  Identities=30%  Similarity=0.364  Sum_probs=40.2

Q ss_pred             HHHHhccCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccCC-cchhhhhhc
Q 045304          487 LCRATDRFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       487 l~~at~~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      ++...++|.-.+.||+|+||+||+|+..      +++.||||++...... ..++|.+|+
T Consensus         8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~   67 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREA   67 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHH
Confidence            3344567888889999999999999974      4578999999754432 345688886

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=2.4e-06  Score=77.70  Aligned_cols=47  Identities=23%  Similarity=0.388  Sum_probs=36.9

Q ss_pred             ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||+||+|+.. +|+.||||++..... ..++|.+|+
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~E~   64 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEA   64 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-CHHHHHHHH
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-hHHHHHHHH
Confidence            34555678999999999999985 488999999975433 356788886

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4e-06  Score=75.97  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=37.4

Q ss_pred             cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||.||+|+..+++.||||++.... ...++|..|+
T Consensus        18 ~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~~~~~~~~E~   63 (285)
T d1fmka3          18 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEA   63 (285)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHH
T ss_pred             HEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECccc-CCHHHHHHHH
Confidence            455567899999999999999988899999996543 3456788886

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.9e-06  Score=77.23  Aligned_cols=43  Identities=35%  Similarity=0.555  Sum_probs=32.1

Q ss_pred             CeeccCCCCcEEEEEecCC----CEEEEEEecccc-CCcchhhhhhcC
Q 045304          498 NLIGRGGFGSVYKARIQDG----MEVAVKVFHLHC-SGAFKSFDVECN  540 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l~~g----~~vAVK~l~~~~-~~~~~~F~~E~~  540 (540)
                      ++||+|+||+||||++.++    ..||||++.... .+..++|.+|++
T Consensus        33 ~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~   80 (311)
T d1r0pa_          33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI   80 (311)
T ss_dssp             EEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             eEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHH
Confidence            6799999999999998543    269999996433 333467888873

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3.5e-06  Score=77.53  Aligned_cols=47  Identities=23%  Similarity=0.351  Sum_probs=34.5

Q ss_pred             cCCccCeeccCCCCcEEEEEec------CCCEEEEEEecccc-CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      +|.-...||+|+||+||+|+..      +++.||||+++... .+....|.+|+
T Consensus        21 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~   74 (308)
T d1p4oa_          21 KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA   74 (308)
T ss_dssp             GEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHH
Confidence            3445577999999999999873      35789999997543 22334588886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.66  E-value=1.1e-05  Score=66.52  Aligned_cols=61  Identities=21%  Similarity=0.139  Sum_probs=32.8

Q ss_pred             cCCCCcEEeCcCccCccc----CCcccCCCCCCCEEECCCCcCccc-------cCccccCCCCCCeEEcccC
Q 045304          327 SLKGLQYLFVGYNRLQGS----IPYSIGDLISLKSLNLSNNNLSGT-------IPVSLEKLSYLEDLNLSFN  387 (540)
Q Consensus       327 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~~L~~l~l~~n  387 (540)
                      ..+.|+.|+|++|.++..    +-..+...++|++|++++|.+...       +...+...++|+.++++++
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            345566666666655532    223445556677777766644321       2233445566777776554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=1.3e-05  Score=66.02  Aligned_cols=64  Identities=13%  Similarity=0.043  Sum_probs=33.9

Q ss_pred             ccccCcceEEcccceeeecC----ccccccCCCCcEEeCcCccCccc-------CCcccCCCCCCCEEECCCCcC
Q 045304          302 ENLKVLVGIDFSVNNFSGVI----PTTIGSLKGLQYLFVGYNRLQGS-------IPYSIGDLISLKSLNLSNNNL  365 (540)
Q Consensus       302 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l  365 (540)
                      ...+.|+.|+|++|.++...    -..+...++|++|++++|.+...       +...+...++|+.|+++.+..
T Consensus        69 ~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          69 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            34455555666665554321    22344556677777766654311       233344456777777766543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.2e-05  Score=72.80  Aligned_cols=46  Identities=28%  Similarity=0.460  Sum_probs=36.8

Q ss_pred             CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      |.-...||+|+||+||+|+. .+|+.||||++.....+..+.|.+|+
T Consensus        14 Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~   60 (288)
T d2jfla1          14 WEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI   60 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHH
T ss_pred             eEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHH
Confidence            33446799999999999987 46899999999765555567788886

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.8e-05  Score=71.76  Aligned_cols=47  Identities=28%  Similarity=0.386  Sum_probs=36.9

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .|...+.||+|+||+||+|.- .+|+.||||++........+.|.+|+
T Consensus        21 ~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~   68 (293)
T d1yhwa1          21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEI   68 (293)
T ss_dssp             TBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHH
T ss_pred             ccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHH
Confidence            355667899999999999985 56999999999755544455677776

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=1.1e-05  Score=73.87  Aligned_cols=47  Identities=32%  Similarity=0.437  Sum_probs=36.4

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC---cchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG---AFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~---~~~~F~~E~  539 (540)
                      .|...+.||+|+||+||+|+- .+|+.||||++......   ..+.|.+|+
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei   66 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEV   66 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHH
Confidence            466778899999999999985 57889999999754432   234577776

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.1e-05  Score=74.12  Aligned_cols=44  Identities=27%  Similarity=0.342  Sum_probs=33.0

Q ss_pred             ccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccCC-cchhhhhhc
Q 045304          496 ENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      -.+.||+|+||.||+|++      .+++.||||+++..... ...+|.+|+
T Consensus        27 l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~   77 (311)
T d1t46a_          27 FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSEL   77 (311)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             EeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHH
Confidence            346899999999999987      34578999999754432 345677775

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=97.38  E-value=2e-05  Score=73.49  Aligned_cols=47  Identities=19%  Similarity=0.280  Sum_probs=36.3

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||+||+|+- .+|+.||||++........+.|.+|+
T Consensus        27 ~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~   74 (350)
T d1koaa2          27 HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEI   74 (350)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHH
T ss_pred             CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHH
Confidence            455567899999999999986 56899999999654433345577776

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=3.5e-05  Score=72.04  Aligned_cols=47  Identities=30%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      .|.....||+|+||+||+|+- .+|+.||||++......  ..+.+.+|+
T Consensus        19 rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei   68 (348)
T d2gfsa1          19 RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYREL   68 (348)
T ss_dssp             TEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHH
Confidence            355557899999999999984 67999999999644322  234566665

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=97.29  E-value=3.3e-05  Score=72.08  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=36.0

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      .|.-.+.||+|+||+||+|+- .+|+.||||++........+.|.+|+
T Consensus        30 ~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei   77 (352)
T d1koba_          30 YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEI   77 (352)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHH
T ss_pred             ceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHH
Confidence            455667899999999999986 57999999999654433345577775

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=2.7e-05  Score=71.09  Aligned_cols=47  Identities=28%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             cCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccCC-cchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSG-AFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~-~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||.||+|+..      +++.||||++...... ..++|..|+
T Consensus        14 ~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~   67 (299)
T d1ywna1          14 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSEL   67 (299)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHH
T ss_pred             HEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHH
Confidence            3445578999999999999863      3468999999754322 234565553

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=5.9e-05  Score=70.44  Aligned_cols=35  Identities=34%  Similarity=0.679  Sum_probs=29.5

Q ss_pred             CCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304          494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC  528 (540)
Q Consensus       494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~  528 (540)
                      |...++||+|+||+||+|+- .+|+.||||++....
T Consensus        22 Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~   57 (350)
T d1q5ka_          22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK   57 (350)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS
T ss_pred             cEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccc
Confidence            55668899999999999997 468999999996543

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=97.23  E-value=5.6e-05  Score=69.95  Aligned_cols=45  Identities=24%  Similarity=0.354  Sum_probs=34.6

Q ss_pred             ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~  539 (540)
                      ++|.-...||+|+||+||+|+- .+|+.||||++....   .+++.+|+
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei   80 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREI   80 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHH
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHH
Confidence            3465667899999999999986 568999999996432   34566665

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=4.8e-05  Score=70.99  Aligned_cols=47  Identities=23%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~  539 (540)
                      .|.....||+|+||+||+|.- .+|+.||||++.....  ...+.+.+|+
T Consensus        19 ~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei   68 (346)
T d1cm8a_          19 VYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYREL   68 (346)
T ss_dssp             SEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHH
Confidence            455567899999999999985 5699999999964322  1234566665

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=5.1e-05  Score=71.07  Aligned_cols=47  Identities=26%  Similarity=0.164  Sum_probs=32.4

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~  539 (540)
                      .|...++||+|+||+||+|+- .+|+.||||++......  ..+.+..|+
T Consensus        18 ~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei   67 (355)
T d2b1pa1          18 RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYREL   67 (355)
T ss_dssp             TEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHH
Confidence            455667899999999999986 46999999999643321  223466665

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00011  Score=67.83  Aligned_cols=48  Identities=25%  Similarity=0.380  Sum_probs=32.5

Q ss_pred             ccCCccCeeccCCCCcEEEEEecCC------CEEEEEEecccc-CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARIQDG------MEVAVKVFHLHC-SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l~~g------~~vAVK~l~~~~-~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||+||+|+....      ..||||++.... ....+.|.+|+
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~   91 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSEL   91 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHH
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHH
Confidence            3455567899999999999997431      369999996543 33345677775

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=8.8e-05  Score=69.04  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=35.0

Q ss_pred             cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc---CCcchhhhhhc
Q 045304          493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC---SGAFKSFDVEC  539 (540)
Q Consensus       493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~---~~~~~~F~~E~  539 (540)
                      +|.-.+.||+|+||.||+|+- .+|+.||||++....   ....+.|.+|+
T Consensus        42 ~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~   92 (350)
T d1rdqe_          42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEK   92 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHH
T ss_pred             CeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHH
Confidence            466667899999999999987 569999999995322   22234566665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=9.3e-05  Score=60.75  Aligned_cols=12  Identities=25%  Similarity=0.299  Sum_probs=5.1

Q ss_pred             CCCCCCeEEccc
Q 045304          375 KLSYLEDLNLSF  386 (540)
Q Consensus       375 ~~~~L~~l~l~~  386 (540)
                      ..+.|++|+++.
T Consensus       130 ~n~~L~~L~l~~  141 (166)
T d1io0a_         130 KNTTLLKFGYHF  141 (166)
T ss_dssp             HCSSCCEEECCC
T ss_pred             hCCCcCEEeCcC
Confidence            334444444433

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00011  Score=67.67  Aligned_cols=48  Identities=23%  Similarity=0.380  Sum_probs=34.7

Q ss_pred             ccCCccCeeccCCCCcEEEEEe----cCCCEEEEEEecccc----CCcchhhhhhc
Q 045304          492 DRFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHLHC----SGAFKSFDVEC  539 (540)
Q Consensus       492 ~~f~~~~~ig~G~~G~Vykg~l----~~g~~vAVK~l~~~~----~~~~~~F~~E~  539 (540)
                      ++|.-.+.||+|+||+||+|+-    .+|+.||||++....    ....+.|.+|+
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~   79 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTER   79 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHH
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHH
Confidence            4577778899999999999975    248899999985432    11234566665

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=7e-05  Score=68.17  Aligned_cols=43  Identities=26%  Similarity=0.349  Sum_probs=26.1

Q ss_pred             cCeeccCCCCcEEEEEec--------CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304          497 NNLIGRGGFGSVYKARIQ--------DGMEVAVKVFHLHCS-GAFKSFDVEC  539 (540)
Q Consensus       497 ~~~ig~G~~G~Vykg~l~--------~g~~vAVK~l~~~~~-~~~~~F~~E~  539 (540)
                      .+.||+|+||.||+|+..        ++..||||++..... ....+|.+|+
T Consensus        18 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~   69 (299)
T d1fgka_          18 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEM   69 (299)
T ss_dssp             EEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHH
T ss_pred             eeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHH
Confidence            367999999999999863        235799999975443 2245566664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.92  E-value=6.3e-05  Score=61.82  Aligned_cols=39  Identities=8%  Similarity=0.083  Sum_probs=16.7

Q ss_pred             CCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcc
Q 045304           57 RLPNLEVLRMRSNNFCGT----IPHFIFNASKLSLLELGDNSF   95 (540)
Q Consensus        57 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~   95 (540)
                      ..++|+.|++++|.++..    +...+...+.++.+++++|.+
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            344455555554444321    112223344555555555544

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00018  Score=67.43  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=27.4

Q ss_pred             ccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          496 ENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       496 ~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      -...||+|+||+||+|+- .+|+.||||++...
T Consensus        17 i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~   49 (362)
T d1q8ya_          17 LVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD   49 (362)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc
Confidence            347899999999999986 57999999999643

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0011  Score=61.06  Aligned_cols=30  Identities=20%  Similarity=0.226  Sum_probs=26.1

Q ss_pred             CeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304          498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLH  527 (540)
Q Consensus       498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~  527 (540)
                      .+||+|+||+||+|+- .+|+.||||++...
T Consensus        18 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~   48 (335)
T d2ozaa1          18 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC   48 (335)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEECS
T ss_pred             EEeeeccCeEEEEEEECCCCCEEEEEEECCc
Confidence            5799999999999986 67899999999643