Citrus Sinensis ID: 045305

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MANVSCTCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNNHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHEEcccccccEEcccccccccccccccccccccccccccHcccccccccccccccc
Coil and Loop (DISEMBL)
MANVSCTCLFFILMIFSHElcdvegrnlkiskslkcakcllspdgqskfkpiardtnnhdaspsllhhgtkttegfvdafrpttpghspgvgh
Flexible Loop (DISEMBL)
MANVSCTCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNNHDASPSLLHHGTKTTEGFVDAFRpttpghspgvgh
Low Complexity Region (SEG)
MANVSCTCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNNHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH
Disordered region (IsUnstruct)
***VSCTCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLL****************************************************
Disordered Region (DISOPRED)
***VSCTCLFFILMIFSHELCDVEGRNLK************************************************DAFRPTTPG*******
Disordered Region (DISEMBL)
MANVSCTCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNNHDASPSLLHHGTKTTEGFVDAFRPTTP********
Disordered Region (DISPRO)
**NVSCTCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLLS***************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANVSCTCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNNHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
357482977	85	hypothetical protein MTR_5g017710 [Medic	0.870	0.952	0.419	2e-10
224084322	105	predicted protein [Populus trichocarpa]	1.0	0.885	0.376	1e-05
358345829	82	hypothetical protein MTR_066s1004 [Medic	0.752	0.853	0.351	9e-05
255562605	101	conserved hypothetical protein [Ricinus	0.913	0.841	0.357	0.0001
358345849	82	hypothetical protein MTR_066s1016 [Medic	0.817	0.926	0.368	0.0002
224094394	108	predicted protein [Populus trichocarpa]	0.946	0.814	0.346	0.0005
255562603	62	conserved hypothetical protein [Ricinus	0.623	0.935	0.433	0.0007

>gi|357482977|ref|XP_003611775.1| hypothetical protein MTR_5g017710 [Medicago truncatula] gi|355513110|gb|AES94733.1| hypothetical protein MTR_5g017710 [Medicago truncatula]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 12/93 (12%)

Query: 1  MANVSCTCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNNHD 60
          MA+ + +CL F+L++ S EL  +EGR+L+        K + SP   S    +   T +  
Sbjct: 1  MAHFTRSCLIFVLLLISCELLSIEGRSLR--------KSIGSPKAAS----VETMTRSVV 48

Query: 61 ASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93
           SP  L +  +  EG V+AFRPTTPGHSPGVGH
Sbjct: 49 LSPRQLQNNGRNLEGSVEAFRPTTPGHSPGVGH 81

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084322|ref|XP_002307258.1| predicted protein [Populus trichocarpa] gi|222856707|gb|EEE94254.1| predicted protein [Populus trichocarpa]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 8/101 (7%)

Query: 1   MANVSCTCLF-FILMIFSHELCDVEGRNLKISKSLK-CAKCLLSPDGQSKFKPIARDTNN 58
           MA +   C F F+++ FS EL  +EGR+LK   S K   K L+  + +      +  T N
Sbjct: 1   MAQMKLLCAFVFLVLFFSQELKFIEGRHLKTRTSNKFLQKELVENNSKLHVNEKSDKTVN 60

Query: 59  HDASPSLLHHGTKTTE------GFVDAFRPTTPGHSPGVGH 93
                         +E      G VD FRPTTPGHSPGVGH
Sbjct: 61  ATPMSPSSPPTPVVSEPHPSPPGHVDDFRPTTPGHSPGVGH 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345829|ref|XP_003636977.1| hypothetical protein MTR_066s1004 [Medicago truncatula] gi|355502912|gb|AES84115.1| hypothetical protein MTR_066s1004 [Medicago truncatula]

 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 24/94 (25%)

Query: 3  NVSCTCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNNHDAS 62
           +   C+  + ++   E+  V+GR+L+   S  C  C          KP  R        
Sbjct: 6  RLQIICVLILFLVLQQEVVIVQGRHLR---SKLCRDCT---------KPHKR-------- 45

Query: 63 PSLLHHGTKTTE--GF-VDAFRPTTPGHSPGVGH 93
           S+ HHG K++   G+ VD FRPT+PGHSPGVGH
Sbjct: 46 -SIAHHGGKSSRRVGYEVDDFRPTSPGHSPGVGH 78

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562605|ref|XP_002522308.1| conserved hypothetical protein [Ricinus communis] gi|223538386|gb|EEF39992.1| conserved hypothetical protein [Ricinus communis]

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 2  ANVSCTCLFFILMIFSHE-LCDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNNHD 60
           N+  TC   +++I  HE +  VEGR+LK     KC++       +S+         +H+
Sbjct: 10 TNLMGTCTCLLVLILCHEAIYVVEGRHLKPKLCKKCSR-------RSESSLDVSKDGHHN 62

Query: 61 ASPSLLHHGTK--TTEGFVDAFRPTTPGHSPGVGH 93
           +  LL+   +  +   FVD FRPT PGHSPGVGH
Sbjct: 63 TTTHLLNGDQEKISKMDFVDDFRPTAPGHSPGVGH 97

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345849|ref|XP_003636987.1| hypothetical protein MTR_066s1016 [Medicago truncatula] gi|355502922|gb|AES84125.1| hypothetical protein MTR_066s1016 [Medicago truncatula] gi|388514207|gb|AFK45165.1| unknown [Medicago truncatula]

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 19/95 (20%)

Query: 1  MANVSCTCLFFILMIFSHEL--CDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNN 58
          MA+++  CLF++L+  SHEL     EGR+L+ S                  +P    +  
Sbjct: 1  MAHLARICLFYVLLFLSHELLLTTTEGRSLRQS-----------------IQPPNIASTK 43

Query: 59 HDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93
            ++  L H   ++ EG V+AFRPTTPGHSPG+GH
Sbjct: 44 MMSTSQLYHRSNRSLEGDVEAFRPTTPGHSPGIGH 78

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094394|ref|XP_002310153.1| predicted protein [Populus trichocarpa] gi|224159501|ref|XP_002338090.1| predicted protein [Populus trichocarpa] gi|222853056|gb|EEE90603.1| predicted protein [Populus trichocarpa] gi|222870802|gb|EEF07933.1| predicted protein [Populus trichocarpa]

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 6   CTCLFFILMIFSHELCDVEGR--NLKISKSLKCAKCLLSPDGQSKF-------KPI-ARD 55
            +   F+++IFSHEL  +EGR  NLK        +     +  SK        KP+ A  
Sbjct: 7   LSAFVFLVLIFSHELQFIEGRYLNLKTPNKFLQKEIRRLVESNSKLHVNDNLDKPVNATK 66

Query: 56  TNNHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93
                    ++     +  G VD FRPT PGHSPGVGH
Sbjct: 67  VAPPAPPAPVVGEPHPSLPGHVDDFRPTAPGHSPGVGH 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562603|ref|XP_002522307.1| conserved hypothetical protein [Ricinus communis] gi|223538385|gb|EEF39991.1| conserved hypothetical protein [Ricinus communis]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 34 LKCAKCLLSPDGQSKFKPIARDTNNHDASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93
          +KC KCL +PD +       R  N   +S   +    K      DAFRPT PGHSPGVGH
Sbjct: 1  MKCVKCLSAPDSKESITRNPRGDNAMSSSQDGIE--PKDGSNNFDAFRPTNPGHSPGVGH 58

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:505006719	105	AT5G66815 "AT5G66815" [Arabido	0.870	0.771	0.336	8.1e-05
TAIR|locus:4515103770	101	AT5G66816 "AT5G66816" [Arabido	0.344	0.316	0.542	8.1e-05
TAIR|locus:505006171	91	AT1G47485 "AT1G47485" [Arabido	0.892	0.912	0.308	0.00017
TAIR|locus:2046798	82	AT2G23440 "AT2G23440" [Arabido	0.182	0.207	0.823	0.00045

TAIR|locus:505006719 AT5G66815 "AT5G66815" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 31/92 (33%), Positives = 43/92 (46%)

Query:     8 CLFFILMIFSHELCDVEGRNLKISKSLKC----AKCLLSPDGQSKFKPIARDTNNHDASP 63
             C F +L+ F    C V GR LK+   +      +K +++    +K   +  D      SP
Sbjct:    14 CYFLMLVFFLGFNC-VHGRTLKVDDKINGGHYDSKTMMA---LAKHNDMMVDDKAMQFSP 69

Query:    64 SLLHHGTKTTEGFVDA--FRPTTPGHSPGVGH 93
                     +  G  DA  FRPTTPGHSPG+GH
Sbjct:    70 PP-PPPPPSQSGGKDAEDFRPTTPGHSPGIGH 100

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103770 AT5G66816 "AT5G66816" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query:    62 SPSLLHHGTKTTE---GFVDAFRPTTPGHSPGVGH 93
             SP + H   +  E   G+ D F PTTPGHSPGVGH
Sbjct:    58 SPGIGHKMKENEENAGGYKDDFEPTTPGHSPGVGH 92

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006171 AT1G47485 "AT1G47485" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 29/94 (30%), Positives = 44/94 (46%)

Query:     1 MANVSC-TCLFFILMIFSHELCDVEGRNLKISKSLKCAKCLLSPDGQSKFKPIARDTNNH 59
             M+N S  T +FF+ ++  H + D E R+LK + SL+        + +     +   T   
Sbjct:     3 MSNRSVSTSIFFLALVVLHGIQDTEERHLKTT-SLEIEGIYKKTEAEHP-SIVVTYTRRG 60

Query:    60 DASPSLLHHGTKTTEGFVDAFRPTTPGHSPGVGH 93
                  ++ H T         FRPT PG+SPGVGH
Sbjct:    61 VLQKEVIAHPTD--------FRPTNPGNSPGVGH 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0048364 "root development" evidence=IMP

GO:0048527 "lateral root development" evidence=IEP

TAIR|locus:2046798 AT2G23440 "AT2G23440" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 14/17 (82%), Positives = 15/17 (88%)

Query:    77 VDAFRPTTPGHSPGVGH 93
             VD FRPT PGHSPG+GH
Sbjct:    62 VDTFRPTEPGHSPGIGH 78


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        93   0.00091  102 3  11 22  0.48    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  522 (56 KB)
  Total size of DFA:  113 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.04u 0.11s 12.15t   Elapsed:  00:00:00
  Total cpu time:  12.04u 0.11s 12.15t   Elapsed:  00:00:00
  Start:  Sat May 11 11:32:38 2013   End:  Sat May 11 11:32:38 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00