Citrus Sinensis ID: 045321

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
GFDILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEEEccccccccEEEEcHHHHHHHHHHHHHHccEEEccccccccccEEEEEEEccccHHHccccccccEEEEEEcccccccccHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccHHHHccccccEEEEcccccccccHHHHccccccEEEEccccccccccccccccccccccccccccccEEEcccccccccccccEEEcccccccccccccccccccccccEEEEEccccccccHHHccccccccEEEEEEEEEcccEEEEEcccccccccEEEEEccccccEEEEcccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccHHccccccHHHEEEEEcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcEEEEEEccccccEEEEEHHHHHHHHHHHHHcHccEEEEEcccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccHHHHHHHHHHccEEEEEEccccccHcccHHHHHHHHHHHEcccccccccccHHHHHHHHccEEEccccccHHccHHHHHHHHccEEEEccccccccccccHHHHHHHcEcEEEEEcccccHHHHHHHHHHcHcccEEEEEcccccccccccccccccccEEEEEEccccccccHHHHHHccccEEEEEEEccccccEEEEcccccccccEEEEEcccccccEEEcccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
GFDILSRTCSVWELSFHLKACGIylcvfppsikisTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGffqvskrraggtikacyvPSLVYYSLLLVAEKtrfvlmpdkeeeslanVKRCFILEDLIEFIFLEQSGMYLQSFLnhssesdhlaLIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLklnipslkclpsLLCTILnlqtlempssyvdhsLEDIWMMQKLMHlnfgsitlpappknysssLKNLIFISalnpnlscyhsgvsnsllglhkleclklvneskLSRVVLSKyqfplslshlslsntelmqdpmpimeklprLQVLKLKqnsylgrklacvgsssfpklTVLHLKSMYwqdewtmgagampkleslivnpcayl
Flexible Loop (DISEMBL)
GFDILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL
Low Complexity Region (SEG)
GFDILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYVPslvyyslllvAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPlglenlillkhlklniPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSllglhkleclklVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL
Disordered region (IsUnstruct)
***ILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTEL****MPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA**
Disordered Region (DISOPRED)
GFDILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSIT***************IFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL
Disordered Region (DISEMBL)
GFDILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL
Disordered Region (DISPRO)
GFDILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GFDILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q8W474	907	Probable disease resistan	yes	no	0.974	0.426	0.268	3e-19
Q8W3K3	910	Putative disease resistan	no	no	0.962	0.419	0.251	2e-18
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.944	0.416	0.248	3e-18
P0DI18	1049	Probable disease resistan	no	no	0.929	0.351	0.249	3e-18
P0DI17	1049	Probable disease resistan	no	no	0.929	0.351	0.249	3e-18
Q8W4J9	908	Disease resistance protei	no	no	0.957	0.418	0.243	4e-17
Q9FJK8	908	Probable disease resistan	no	no	0.949	0.415	0.243	1e-16
Q9M667	835	Disease resistance protei	no	no	0.909	0.432	0.268	2e-16
Q9STE7	847	Putative disease resistan	no	no	0.944	0.442	0.249	2e-16
P59584	910	Disease resistance protei	no	no	0.944	0.412	0.241	1e-15

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 204/477 (42%), Gaps = 90/477 (18%)

Query: 1   GFDILSRTCS-------VWELSF-----HLKACGIYLCVFPPSIKISTRQLRQLWIAEGF 48
           G DI+ RT S       V  +SF     +LK C +YL  FP   KI+  +L   W AEG 
Sbjct: 391 GSDIVGRTSSNNSSIYHVLSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGI 450

Query: 49  I---QYNSEET----AEHYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKT 101
                Y++ ET     + YL+EL+ R      +         C++  ++    L  A++ 
Sbjct: 451 STAEDYHNGETIQDVGQSYLEELVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEE 510

Query: 102 RFVLMPDKE----EESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLAL--- 154
            F+ +  K       S  N +       L+   +   + ++++  +N+      + L   
Sbjct: 511 NFLQIAVKSVGVTSSSTGNSQSPCRSRRLV---YQCPTTLHVERDINNPKLRSLVVLWHD 567

Query: 155 IDCENF------CEKFKYLRLLNLGYAVLD--QFPLGLENLILLKHLKLNIPSLKCLPSL 206
           +  EN+        + K LR+L+L Y   +  + P G+ NLI L++L L    +  LPS 
Sbjct: 568 LWVENWKLLGTSFTRLKLLRVLDLFYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSS 627

Query: 207 LCTILNLQTLEMPSSYVDHSLEDIWM-MQKLMHLNFGSITLPAP-PKNYSSSLKNLIFIS 264
           L  ++ L  L +        + D++M M +L +L      LP    K    SL+NL+ + 
Sbjct: 628 LGNLMLLIYLNLDVDTEFIFVPDVFMRMHELRYLK-----LPLHMHKKTRLSLRNLVKLE 682

Query: 265 ALNPNLSCYHSG-------------------------VSNSLLGLHKLECLKLVN-ESKL 298
            L    S +HS                          +S S+ GL  LE L +V   SK 
Sbjct: 683 TL-VYFSTWHSSSKDLCGMTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKK 741

Query: 299 SR---VVLS---------------KYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLK 340
            R   +VL                +  FP  L+ + LS   L +DPMPI+EKL  L+ + 
Sbjct: 742 MREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVI 801

Query: 341 LKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
           L + SY GR++ C G   FP+L  L +  +   +EW +  G+MP LE+L +  C  L
Sbjct: 802 LLKGSYCGRRMVCSG-GGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEEL 857

Possible disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 193/446 (43%), Gaps = 64/446 (14%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQ---YNSE---ETAEHYLKELIH 66
           EL  +LK C +YL  FP    I   +L   W AEG ++   Y+ +   +  E Y++EL+ 
Sbjct: 419 ELPSYLKHCFLYLAHFPEDHNIKVEKLSYCWAAEGILEPRHYHGQTIRDVGESYIEELVR 478

Query: 67  RGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFV----LMPDKEEESLANVKRCFI 122
           R      +       +AC++  ++    LL A++  FV    ++P           R F+
Sbjct: 479 RNMVIAERDVTTLRFEACHLHDMMREVCLLKAKEENFVQIASILPPTANSQYPGTSRRFV 538

Query: 123 LEDLIEF-IFLEQSGMYLQSFL---NHSSESDHL------------------ALIDCENF 160
            ++     +  + +   LQS L    +  +S  L                  A  +  N 
Sbjct: 539 SQNPTTLHVSRDINNPKLQSLLIVWENRRKSWKLLGSSFIRLELLRVLDLYKAKFEGRNL 598

Query: 161 ---CEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNI--PSL---KCLPSL------ 206
                K  +LR LNL  A + + P  L NL LL +L +N+   SL    CL  +      
Sbjct: 599 PSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLLIYLDINVCTKSLFVPNCLMGMHELRYL 658

Query: 207 -------------LCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNY 253
                        LC ++NL+TLE  S+  + SLED+  M  L  L  G     +    +
Sbjct: 659 RLPFNTSKEIKLGLCNLVNLETLENFSTE-NSSLEDLRGMVSLRTLTIGLFKHISKETLF 717

Query: 254 SS--SLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLS 311
           +S   +++L  +S   P+ S     +    + L  +  LK +N       +  +  FP  
Sbjct: 718 ASILGMRHLENLSIRTPDGSSKFKRIMEDGIVLDAIH-LKQLNLRLYMPKLPDEQHFPSH 776

Query: 312 LSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371
           L+ +SL    L++DP+PI+EKL  L+ ++L   ++ G+++       FP+L  L++  + 
Sbjct: 777 LTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMVS-SDGGFPQLHRLYIWGLA 835

Query: 372 WQDEWTMGAGAMPKLESLIVNPCAYL 397
             +EW +  G+MP+L +L +  C  L
Sbjct: 836 EWEEWIVEEGSMPRLHTLTIWNCQKL 861

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 191/446 (42%), Gaps = 71/446 (15%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEG-FIQYNSEETAEHYLKELIHRGFFQ 71
           +L   LK C +YL  FP   KI TR L   W AEG +      ++ E YL+EL+ R    
Sbjct: 412 DLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIYDGLTILDSGEDYLEELVRRNLVI 471

Query: 72  VSKRRAGGTIKACYVPSLV------------YYSLLLVAEKTRFVLM--PDKEEESLANV 117
             K      +K C +  ++            +  ++ V   T  ++   P +      + 
Sbjct: 472 AEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIKVPTSTSTIIAQSPSRSRRLTVHS 531

Query: 118 KRCF-ILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCE-KFK---------- 165
            + F IL    +   L   G+    ++  +S    L L+   +    KF+          
Sbjct: 532 GKAFHILGHKKKVRSLLVLGLKEDLWIQSASRFQSLPLLRVLDLSSVKFEGGKLPSSIGG 591

Query: 166 --YLRLLNLGYAVLDQFPLGLENLILLK----HLKLNIPSLKCLPSLLCTILNLQTLEMP 219
             +LR L+L  AV+   P  + NL L+     H+ + +P    +P++L  +L L+ L +P
Sbjct: 592 LIHLRFLSLHQAVVSHLPSTIRNLKLMLYLNLHVAIGVPV--HVPNVLKEMLELRYLSLP 649

Query: 220 SSYVDHS---------LEDIWMMQ----------KLMHLNFGSITLPA--PPKNYSSSLK 258
               D +         LE +W             ++  L F  ++       +N SSSL+
Sbjct: 650 LDMHDKTKLELGDLVNLEYLWCFSTQHSSVTDLLRMTKLRFFGVSFSERCTFENLSSSLR 709

Query: 259 N------LIFISALNPNLSCYHSGVSNSLLGLHKLECLKL-VNESKLSRVVLSKYQFPLS 311
                  L FI +    +  Y   V   +L    L+ L L V+ SK+      ++Q P  
Sbjct: 710 QFRKLETLSFIYSRKTYMVDY---VGEFVLDFIHLKKLSLGVHLSKIP----DQHQLPPH 762

Query: 312 LSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371
           ++H+ L    + +DPMPI+EKL  L+ ++L++ +++GR++ C     FP+L  L +    
Sbjct: 763 IAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC-SKGGFPQLRALQISEQS 821

Query: 372 WQDEWTMGAGAMPKLESLIVNPCAYL 397
             +EW +  G+MP L  LI++ C  L
Sbjct: 822 ELEEWIVEEGSMPCLRDLIIHSCEKL 847

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 92/461 (19%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQ---YNSE---ETAEHYLKELIH 66
           EL  +LK C +YL  FP   +I+ + L   W AEG  Q   Y+ E   +  + Y++EL+ 
Sbjct: 419 ELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVR 478

Query: 67  RG----------------------------------FFQVSKRRA--GGTIKACYVPSLV 90
           R                                   F Q++  R   G ++       LV
Sbjct: 479 RNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLV 538

Query: 91  Y-YSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSES 149
           Y Y + L  EK     + D +  SL  V   ++      ++ L  S + L+         
Sbjct: 539 YQYPITLDVEKD----INDPKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHR 594

Query: 150 DHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNI--PSLKCLPSLL 207
             L      +   +  +LR LNL +A +   P  L NL LL +L L I       +P++L
Sbjct: 595 AKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVL 654

Query: 208 CTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSS------SLKNLI 261
             +  L+ L +P             M +   L   ++      KN+S+       L+ ++
Sbjct: 655 KEMQQLRYLALPKD-----------MGRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMV 703

Query: 262 FISALNPNLSCYHS--GVSNSLLGLHKLECLKLVN-----ESKLSRVV------------ 302
            +  L   L    S   ++ S+ GL  LE L + +      +K + +V            
Sbjct: 704 RLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLK 763

Query: 303 -----LSKYQ-FPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGS 356
                LSK Q FP  L+ L L +  L +DPMPI+EKL +L+ L+L++ S+ G+++ C  S
Sbjct: 764 LYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVC-SS 822

Query: 357 SSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
             FP+L  L +K +   ++W +   +MP L +L +  C  L
Sbjct: 823 GGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKL 863

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 92/461 (19%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQ---YNSE---ETAEHYLKELIH 66
           EL  +LK C +YL  FP   +I+ + L   W AEG  Q   Y+ E   +  + Y++EL+ 
Sbjct: 419 ELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVR 478

Query: 67  RG----------------------------------FFQVSKRRA--GGTIKACYVPSLV 90
           R                                   F Q++  R   G ++       LV
Sbjct: 479 RNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLV 538

Query: 91  Y-YSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSES 149
           Y Y + L  EK     + D +  SL  V   ++      ++ L  S + L+         
Sbjct: 539 YQYPITLDVEKD----INDPKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHR 594

Query: 150 DHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNI--PSLKCLPSLL 207
             L      +   +  +LR LNL +A +   P  L NL LL +L L I       +P++L
Sbjct: 595 AKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVL 654

Query: 208 CTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSS------SLKNLI 261
             +  L+ L +P             M +   L   ++      KN+S+       L+ ++
Sbjct: 655 KEMQQLRYLALPKD-----------MGRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMV 703

Query: 262 FISALNPNLSCYHS--GVSNSLLGLHKLECLKLVN-----ESKLSRVV------------ 302
            +  L   L    S   ++ S+ GL  LE L + +      +K + +V            
Sbjct: 704 RLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLK 763

Query: 303 -----LSKYQ-FPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGS 356
                LSK Q FP  L+ L L +  L +DPMPI+EKL +L+ L+L++ S+ G+++ C  S
Sbjct: 764 LYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVC-SS 822

Query: 357 SSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
             FP+L  L +K +   ++W +   +MP L +L +  C  L
Sbjct: 823 GGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKL 863

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 186/444 (41%), Gaps = 64/444 (14%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNS-EETAEHYLKELIHRGFFQ 71
           +L  HLK C + L  FP   +IST  L   W AEG    ++ E++ E+YL+EL+ R    
Sbjct: 418 DLPTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYDGSTIEDSGEYYLEELVRRNLVI 477

Query: 72  VSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFV-LMPDKEEESLANV------KRCFILE 124
                     K C +  ++    L  A++  F+ ++ D    S  N       +R  I  
Sbjct: 478 ADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQSPSRSRRLSIHS 537

Query: 125 DLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD--QFPL 182
                I   ++   ++S +    E D+   I   +       LR+L+L +   +  + P 
Sbjct: 538 GKAFHILGHKNKTKVRSLIVPRFEEDYW--IRSASVFHNLTLLRVLDLSWVKFEGGKLPC 595

Query: 183 GLENLILLKHLKLNIPSLKCLPS-------------------------LLCTILNLQTLE 217
            +  LI L++L L    +  LPS                         +L  ++ L+ L 
Sbjct: 596 SIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLRVDTEEPIHVPNVLKEMIQLRYLS 655

Query: 218 MPSSYVDH----------------------SLEDIWMMQKLMHLNFGSITLPAPPKNYSS 255
           +P    D                       S+ D+  M KL +L   S++     +  SS
Sbjct: 656 LPLKMDDKTKLELGDLVNLEYLYGFSTQHSSVTDLLRMTKLRYLAV-SLSERCNFETLSS 714

Query: 256 SLKNLIFISALNP--NLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLS 313
           SL+ L  +  LN   +L  Y        +  H +   +L    ++S++   ++QFP  L 
Sbjct: 715 SLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIP-DQHQFPPHLV 773

Query: 314 HLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQ 373
           HL L    + +DPMPI+EKL  L+ ++L + ++LG ++ C     FP+L V+ +      
Sbjct: 774 HLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQLCVIEISKESEL 832

Query: 374 DEWTMGAGAMPKLESLIVNPCAYL 397
           +EW +  G+MP L +L ++ C  L
Sbjct: 833 EEWIVEEGSMPCLRTLTIDDCKKL 856

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 189/447 (42%), Gaps = 70/447 (15%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNS-EETAEHYLKELIHRGFFQ 71
           +L  HLK   +YL  FP   KI T+ L   W AEG    ++ +++ E+YL+EL+ R    
Sbjct: 418 DLPTHLKHRFLYLAHFPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRRNLVI 477

Query: 72  VSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFV-LMPDKEEESLANVK-----RCFILED 125
              R        C +  ++    L  A++  F+ ++ D    S  N +     R F +  
Sbjct: 478 ADNRYLSLEFNFCQMHDMMREVCLSKAKEENFLQIIKDPTSTSTINAQSPSRSRRFSIHS 537

Query: 126 LIEF-IFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD--QFPL 182
              F I   ++   ++S +    E D    I   +       LR+L+L     +  + P 
Sbjct: 538 GKAFHILGHRNNPKVRSLIVSRFEEDF--WIRSASVFHNLTLLRVLDLSRVKFEGGKLPS 595

Query: 183 GLENLILLKHLKL------NIPSLKC-------------------LPSLLCTILNLQTLE 217
            +  LI L++L L      ++PS                      +P++L  +L L+ L 
Sbjct: 596 SIGGLIHLRYLSLYGAVVSHLPSTMRNLKLLLFLNLRVDNKEPIHVPNVLKEMLELRYLS 655

Query: 218 MPSSYVDH----------------------SLEDIWMMQKLMHLNFGSITLPAPPKNYSS 255
           +P    D                       S+ D+  M KL +L   S++     +  SS
Sbjct: 656 LPQEMDDKTKLELGDLVNLEYLWYFSTQHSSVTDLLRMTKLRNLGV-SLSERCNFETLSS 714

Query: 256 SLKNLIFISALNPNLS-----CYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPL 310
           SL+ L  +  LN   S       H G     +  H +   +L    ++S++   ++QFP 
Sbjct: 715 SLRELRNLEMLNVLFSPEIVMVDHMG---EFVLDHFIHLKQLGLAVRMSKIP-DQHQFPP 770

Query: 311 SLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM 370
            L+H+ L +  + +DPMPI+EKL  L+ + L   +++GR++ C     FP+L  L +   
Sbjct: 771 HLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQLCALGISGE 829

Query: 371 YWQDEWTMGAGAMPKLESLIVNPCAYL 397
              +EW +  G+MP L +L ++ C  L
Sbjct: 830 SELEEWIVEEGSMPCLRTLTIHDCEKL 856

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 180/409 (44%), Gaps = 48/409 (11%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNS----EETAEHYLKELIHRG 68
           EL    K C +YL +FP   +I   +L  L +AEGFIQ +     E+ A +Y++ELI R 
Sbjct: 412 ELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRS 471

Query: 69  FFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKE--EESLANVKRCFILEDL 126
             + + RR  G + +C +  L+    +  +++  FV + +    + S    +R  +    
Sbjct: 472 LLE-AVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQF 530

Query: 127 IEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLE- 185
             +   ++    ++SFL +  E DHL  +D E      K LR+L+ G   L   P  +  
Sbjct: 531 KRYSSEKRKNKRMRSFL-YFGEFDHLVGLDFET----LKLLRVLDFGSLWL---PFKING 582

Query: 186 NLILLKHLKLNIPSLK--CLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHL--NF 241
           +LI L++L ++  S+    + +++  +  LQTL +  +Y      D+  +  L H+  NF
Sbjct: 583 DLIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHVIGNF 642

Query: 242 GSITLPAPPKNYSSSLKNLIFIS--ALNPNL--SCYHSGVSN--------------SLLG 283
               L     N   +L ++ F S   L P L  +    G+S               SL  
Sbjct: 643 FGGLLIGDVANL-QTLTSISFDSWNKLKPELLINLRDLGISEMSRSKERRVHVSWASLTK 701

Query: 284 LHKLECLKLVNESKL------SRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQ 337
           L  L  LKL   +++         V S      SL  ++L      +DPMP ++K+PRL+
Sbjct: 702 LESLRVLKLATPTEVHLSLESEEAVRSMDVISRSLESVTLVGITFEEDPMPFLQKMPRLE 761

Query: 338 VLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKL 386
            L L   +Y G+    V    F +L  L L  M   DE  +   AMP L
Sbjct: 762 DLILLSCNYSGK--MSVSEQGFGRLRKLDL-LMRSLDELQIEEEAMPNL 807

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 190/429 (44%), Gaps = 54/429 (12%)

Query: 10  SVWELSF-----HLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSE----ETAEHY 60
           +V++LSF      LK C +Y  VFP   +I   +L  L +AEGFIQ + E    + A  Y
Sbjct: 404 TVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVARCY 463

Query: 61  LKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRC 120
           + EL+ R   + ++R   G + +C +  L+    +  A++  FV + ++++ S +++ R 
Sbjct: 464 IDELVDRSLVK-AERIERGKVMSCRIHDLLRDLAIKKAKELNFVNVYNEKQHS-SDICRR 521

Query: 121 FILEDLIEFIFL--EQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNL------ 172
            ++  L+   +L   +    ++SFL    E      ++  N   K K LR+LN+      
Sbjct: 522 EVVHHLMNDYYLCDRRVNKRMRSFL-FIGERRGFGYVNTTNL--KLKLLRVLNMEGLLFV 578

Query: 173 GYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWM 232
              + +  P  +  LI L++L +    +  LP+ +  +  LQTL+   +       D+  
Sbjct: 579 SKNISNTLPDVIGELIHLRYLGIADTYVSILPASISNLRFLQTLDASGNDPFQYTTDLSK 638

Query: 233 MQKLMHL-----------------NFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHS 275
           +  L H+                    SI+  +  K     L+NL  +   + +      
Sbjct: 639 LTSLRHVIGKFVGECLIGEGVNLQTLRSISSYSWSKLNHELLRNLQDLEIYDHSKWVDQR 698

Query: 276 GVSNSLLGLHK----------LECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQD 325
            V  + +   K          +   KL +ES+ + + L    FP SL  L+L  T L ++
Sbjct: 699 RVPLNFVSFSKPKNLRVLKLEMRNFKLSSESRTT-IGLVDVNFP-SLESLTLVGTTLEEN 756

Query: 326 PMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL---KSMYWQDEWTMGAGA 382
            MP ++KLPRL+ L LK  +Y G K+  + +  F +L  L +   +  +  DE  +   A
Sbjct: 757 SMPALQKLPRLEDLVLKDCNYSGVKIMSISAQGFGRLKNLEMSMERRGHGLDELRIEEEA 816

Query: 383 MPKLESLIV 391
           MP L  L V
Sbjct: 817 MPSLIKLTV 825

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 191/451 (42%), Gaps = 76/451 (16%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNS-EETAEHYLKELIHRGFFQ 71
           +L  HLK C ++L  +P   KI T+ L   W AEG    ++ +++ E+YL+EL+ R    
Sbjct: 418 DLPTHLKHCFLHLAHYPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRRNLVI 477

Query: 72  VSKRR--AGGTIKACYVPSLVYYSLLLVAEKTRFV-LMPDKEEESLANV------KRCFI 122
              R   +   IK C +  ++    L  A++  F+ ++ D    S  N       +R  I
Sbjct: 478 ADNRYLISEFKIKNCQMHDMMREVCLSKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSI 537

Query: 123 LEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD--QF 180
                  I   +    ++S +    E D    I   +       LR+L+L +   +  + 
Sbjct: 538 HSGKAFHILGHKRNAKVRSLIVSRFEEDFW--IRSASVFHNLTLLRVLDLSWVKFEGGKL 595

Query: 181 PLGLENLILLKHLKL------NIPS-------------------LKCLPSLLCTILNLQT 215
           P  +  LI L++L+L      ++PS                   L  +P++L  ++ L+ 
Sbjct: 596 PCSIGGLIHLRYLRLYGAVVSHLPSTMRNLKLLLYLNLSVHNEDLIHVPNVLKEMIELRY 655

Query: 216 LEMPSSYVDH----------------------SLEDIWMMQKLMHLNFGSITLPAPPKNY 253
           L +P    D                       S+ D+  M KL +L   S++     K  
Sbjct: 656 LSIPVKMDDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLRNLTV-SLSERYNFKTL 714

Query: 254 SSSLKNLIFISAL-----NPNLSCYHSG--VSNSLLGLHKLECLKLVNESKLSRVVLSKY 306
           SSSL+ L  +  L            H G  V +  + L +L  +  V  SK+      ++
Sbjct: 715 SSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLV--VRMSKIP----DQH 768

Query: 307 QFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLH 366
           QFP  L H+ L    + +DPMPI+EKL  L+ ++L+  +++GR++ C     F +L  L 
Sbjct: 769 QFPPHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVC-SKDGFTQLCALD 827

Query: 367 LKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
           +      ++W +  G+MP L +L ++ C  L
Sbjct: 828 ISKQSELEDWIVEEGSMPCLRTLTIHDCEKL 858

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
359496848	856	PREDICTED: disease resistance RPP8-like	0.967	0.448	0.284	3e-34
359491404	922	PREDICTED: probable disease resistance R	0.929	0.400	0.288	7e-34
147766035	902	hypothetical protein VITISV_038742 [Viti	0.967	0.425	0.277	1e-32
297745275	1136	unnamed protein product [Vitis vinifera]	0.937	0.327	0.307	2e-30
147781606	1183	hypothetical protein VITISV_025760 [Viti	0.977	0.327	0.275	3e-29
225433944	1086	PREDICTED: disease resistance RPP8-like	0.977	0.357	0.275	4e-29
225433948	1045	PREDICTED: putative disease resistance p	0.967	0.367	0.272	9e-29
297734140	965	unnamed protein product [Vitis vinifera]	0.695	0.286	0.293	6e-28
350535589	888	NRC1 [Solanum lycopersicum] gi|83630761|	0.939	0.420	0.297	4e-27
255577223	1115	conserved hypothetical protein [Ricinus	0.964	0.343	0.272	4e-27

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 206/436 (47%), Gaps = 52/436 (11%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEET----AEHYLKELIHRG 68
           +L ++LK C +Y  +FP  ++I   +L  LWIAEGF+Q   EE+    AE +L+EL+ R 
Sbjct: 376 DLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRS 435

Query: 69  FFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDK---EEESLANVKRCFILED 125
             QV+++R  G IKAC +  L+    +  A++ +F+ + D    +       +R  +   
Sbjct: 436 MIQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSS 495

Query: 126 LIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLE 185
           L E++ L     + +S L+ S   + L     ++  E  K LR+L+L        P  + 
Sbjct: 496 LEEYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHALPKEIR 555

Query: 186 NLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSIT 245
            L+ L++L L    L+ LPS +    NLQTL++ ++ V      +W M  L HL     +
Sbjct: 556 ELVHLRYLGLRRTGLQRLPSSIQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTS 615

Query: 246 LPAPPKNYSS--SLKNLIFISALN----PNL----------------SCYHSGVSNSLLG 283
           +   P  + S   L+ L  +S       P+L                +     +S  L+ 
Sbjct: 616 IAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVK 675

Query: 284 LHKLECLK--------------LVNESKLSRVVLSK--------YQFPLSLSHLSLSNTE 321
           L  L+ L+              L+N+  + ++ LS          +   +L+ + L N+ 
Sbjct: 676 LSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILENSL 735

Query: 322 LMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAG 381
           L+QD   I+ KLP LQ+LKL  NS+ G+++ C  +S FPKL  L L  +   +EW +  G
Sbjct: 736 LVQDIFVILGKLPNLQMLKLLINSFFGKEITC-SASGFPKLHGLELSELVNLEEWRVDDG 794

Query: 382 AMPKLESLIVNPCAYL 397
           AMP L  LI++ C  L
Sbjct: 795 AMPSLRHLIIDHCDQL 810

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 205/447 (45%), Gaps = 78/447 (17%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNS----EETAEHYLKELIHRG 68
           +L ++LK+C +Y  +FP   +IS R+L  LW+AEGF+Q       E+ AE YL+EL+ R 
Sbjct: 430 DLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELVGRS 489

Query: 69  FFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIE 128
             QV+ R++ G IK C V  L++             +   KE++ L  +   F +  L  
Sbjct: 490 MIQVATRKSNGRIKTCCVHDLLH----------ELSVSKGKEDQFLDIIHGEFTVSSLTR 539

Query: 129 FIFLEQSGMYLQSFLNHSSESDHLALIDCENFCE-------KFKYLRLLNLGYAVLDQFP 181
              + +  ++L       + S   +L+ C + CE       KFK LR+L+L    + +  
Sbjct: 540 ---VRRLAIHLGVPPTTKNTSKVRSLL-CFDICEPSFQELRKFKLLRILDLEGVYISRLH 595

Query: 182 LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241
             + NLI L++L L    LK LP  +  +LNLQTL++ S+ ++     IW MQKL HL F
Sbjct: 596 SSIGNLIHLRYLGLRGTWLKKLPPSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYF 655

Query: 242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCY-----------------------HSGVS 278
             +   A      +SL NL  +  +  N + Y                          + 
Sbjct: 656 NELEEMAVNPPTDASLANLQTLHGICINQTSYVENGLSKLTNLRELGLHGDLLLHEEAIG 715

Query: 279 NSLLGLHKLECLKLVNESK----------------------------LSRVVLSKYQFPL 310
             +    +LECLKL                                 ++++  ++Y FP 
Sbjct: 716 KWIFSSERLECLKLHTRDVMGDFAKNAIPKLNFSSHPHLIKLHLKGFMAKLFDAEY-FPQ 774

Query: 311 SLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM 370
           +L+ LSL  + LM+DPM  +E L  L+VLKLK ++YLG+++ C     FP+L  L L  +
Sbjct: 775 NLTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMIC-SCGGFPQLHFLKLSFL 833

Query: 371 YWQDEWTMGAGAMPKLESLIVNPCAYL 397
              + W +  GAM +L  L +  C  L
Sbjct: 834 NTVERWRIEDGAMGRLRQLEIIECKRL 860

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 204/436 (46%), Gaps = 52/436 (11%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEET----AEHYLKELIHRG 68
           +L ++LK C +Y  +FP  ++I   +L  LWIAEGF+Q   EE+    AE +L+EL+ R 
Sbjct: 422 DLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRS 481

Query: 69  FFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDK---EEESLANVKRCFILED 125
             QV+++R  G IK C +  L+    +  A++ +F+ + D    +       +R  +   
Sbjct: 482 MIQVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSS 541

Query: 126 LIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLE 185
           L E++ L     + +S L+ S   + L     ++  E  K LR+L+L        P  + 
Sbjct: 542 LEEYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVLDLERVQTHALPKEIR 601

Query: 186 NLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSIT 245
            L+ L++L L    L+ LPS +    NLQTL++ ++ V      +W M  L HL     +
Sbjct: 602 ELVHLRYLGLRRTGLQRLPSSVQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTS 661

Query: 246 LPAPPKNYSS--SLKNLIFISALN----PNL----------------SCYHSGVSNSLLG 283
           +   P  + S   L+ L  +S       P+L                +     +S  L+ 
Sbjct: 662 IAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVK 721

Query: 284 LHKLECLK--------------LVNESKLSRVVLSK--------YQFPLSLSHLSLSNTE 321
           L  L+ L+              L+N+  + ++ LS          +   +L+ + L  + 
Sbjct: 722 LSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILEKSL 781

Query: 322 LMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAG 381
           L+QD   I+ KLP LQ+LKL  NS+ G+++ C  +S FPKL  L L  +   +EW +  G
Sbjct: 782 LVQDIFVILGKLPNLQMLKLLINSFFGKEITC-SASGFPKLHGLELSELVNLEEWRVDDG 840

Query: 382 AMPKLESLIVNPCAYL 397
           AMP L  L+++ C  L
Sbjct: 841 AMPSLRHLVIDHCDQL 856

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745275|emb|CBI40355.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/410 (30%), Positives = 201/410 (49%), Gaps = 38/410 (9%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEET----AEHYLKELIHRG 68
           +L ++LK+C +Y  +FP   +I   +L +LW+AEGFIQ   +ET    AE Y+ ELIHR 
Sbjct: 416 DLPYYLKSCFLYCGIFPEDSEIKASKLIRLWLAEGFIQRRGKETLEDIAEDYMHELIHRS 475

Query: 69  FFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESL-ANVKRCFILEDLI 127
             QV+KRR  G +++C +  L+    +L A+   F  + +  + +   +V+R  I ++L+
Sbjct: 476 LIQVAKRRVDGEVESCRMHDLLRDLAVLEAKDANFFEVHENIDFTFPISVRRLVIHQNLM 535

Query: 128 EFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLEN 186
           +    +      L+S ++ S      +        E  K L +L LG    +  P  +  
Sbjct: 536 KKNISQCLHNSQLRSLVSFSETKGKKSW---RYLQEHIKLLTVLELGNT--NMLPRDIGE 590

Query: 187 LILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSY--VDHSLEDIWMMQKLMHLNFGSI 244
            I LK L +N      LPS +C ++NLQ+L++   Y  + +S   IW +Q+L HLN G  
Sbjct: 591 FIHLKCLCINGYGRVTLPSSICRLVNLQSLDLGDQYGSIPYS---IWKLQQLRHLNCGLF 647

Query: 245 TLPAPPKNYSSSLKNLIFISALNPNLSCY-------HSGV--------SNSLL-GLHKLE 288
           T P   K +  S+  L  +  L  ++  Y       H G+          +L  GL    
Sbjct: 648 T-PYLKKGFFESITKLTALQTLALSIEKYSKKRLLNHLGLEWQKNVIEEKTLFPGLEPFS 706

Query: 289 CLKLVNE----SKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQN 344
           C   + E     KL ++      +P +L  L L   EL  DPM I+EKLP L++L L  +
Sbjct: 707 CHAYLYELCLVGKLEKLPEQFEFYPPNLLQLDLWKCELRDDPMMILEKLPSLRMLGLYFD 766

Query: 345 SYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPC 394
           +Y+G K+ C  S  F +L  L L  +   +E T+G GAM  L++L +  C
Sbjct: 767 AYVGIKMIC-SSGGFLQLERLSLVELKKLEELTVGEGAMSSLKTLQILNC 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781606|emb|CAN64832.1| hypothetical protein VITISV_025760 [Vitis vinifera]

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 132/479 (27%), Positives = 214/479 (44%), Gaps = 91/479 (18%)

Query: 4    ILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQ-----YNSEETAE 58
            ++ R C +     H+K C  Y  +FP  I +  R+L  LW+AEG +Q       SE+ AE
Sbjct: 685  MIDRKCPL-----HMKRCLFYFGLFPQDIDVPARRLIALWVAEGLMQPEGENETSEDVAE 739

Query: 59   HYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLM--PDKEEESLAN 116
              L +LI +G  QV+K++  G +K C +P  +    L  A +T F+      + E SL+ 
Sbjct: 740  ICLIKLIAQGMVQVTKKKLNGDVKTCRLPDALQRHWLSKARQTTFLQFHTNTRSELSLST 799

Query: 117  --VKRCFILEDLIEFIFLEQSGMYLQ-------------SFLNHSSESDHLALIDCENFC 161
              V+R     D  +F +    G Y +             SFL+  ++       D  NF 
Sbjct: 800  GLVRRLVDHLDKEDFSYGHIHGEYNRTLTSLKPRYQHALSFLSFDTQEGSKPGEDIGNFL 859

Query: 162  EK------FKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQT 215
             +      F  LR+L+L +    + P  +  L  L++L L    L+ LPS +  + NLQT
Sbjct: 860  HRCISSSCFLLLRVLDLEHVFRPKLPETIGKLSRLRYLGLRWTFLEMLPSSISKLQNLQT 919

Query: 216  LEMPSSYVDHSLEDIWMMQKLMHL----NFGSITLPAPPKNYSSSLKNL--IFISALNP- 268
            L++  +Y++     IW +Q+L HL    ++ S  +P P     ++L+ L  +F+    P 
Sbjct: 920  LDLKHTYINILPNSIWKIQQLRHLYLSESYRSKFMPQPRVGSLTNLQTLWGLFVDEETPV 979

Query: 269  -------------NLSCY------------HSGVSNSLLGLHKLECLKLVNES------- 296
                          L+C                V+N +L L  L  L+L ++        
Sbjct: 980  KDGLDRLVNLKKLGLTCRLMPSQQQAMLAQLEAVANWVLKLDHLHTLRLKSDDGENQPGD 1039

Query: 297  ----------KLSRVV--------LSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQV 338
                      KLS +         L  ++ P SLS L+LS + L +DP+  ++KLP L++
Sbjct: 1040 LDLKPLSGLEKLSSIYLLGRLKNPLVVFESPESLSDLTLSGSGLTEDPLQKLDKLPNLKI 1099

Query: 339  LKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
            L+L   SY+G+ + C  S  FP+L VL L  +   +EW +  GA+  L  L +  C  L
Sbjct: 1100 LRLLAKSYMGKNMLC-SSGGFPQLRVLKLWKLEELEEWNVEEGALRALRDLEIRSCPRL 1157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433944|ref|XP_002267359.1| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 132/479 (27%), Positives = 214/479 (44%), Gaps = 91/479 (18%)

Query: 4    ILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQ-----YNSEETAE 58
            ++ R C +     H+K C  Y  +FP  I +  R+L  LW+AEG +Q       SE+ AE
Sbjct: 588  MIDRKCPL-----HMKRCLFYFGLFPQDIDVPARRLIALWVAEGLMQPEGENETSEDVAE 642

Query: 59   HYLKELIHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLM--PDKEEESLAN 116
              L +LI +G  QV+K++  G +K C +P  +    L  A +T F+      + E SL+ 
Sbjct: 643  ICLIKLIAQGMVQVTKKKLNGDVKTCRLPDALQRHWLSKARQTTFLQFHTNTRSELSLST 702

Query: 117  --VKRCFILEDLIEFIFLEQSGMYLQ-------------SFLNHSSESDHLALIDCENFC 161
              V+R     D  +F +    G Y +             SFL+  ++       D  NF 
Sbjct: 703  GLVRRLVDHLDKEDFSYGHIHGEYNRTLTSLKPRYQHALSFLSFDTQEGSKPGEDIGNFL 762

Query: 162  EK------FKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQT 215
             +      F  LR+L+L +    + P  +  L  L++L L    L+ LPS +  + NLQT
Sbjct: 763  HRCISSSCFLLLRVLDLEHVFRPKLPETIGKLSRLRYLGLRWTFLEMLPSSISKLQNLQT 822

Query: 216  LEMPSSYVDHSLEDIWMMQKLMHL----NFGSITLPAPPKNYSSSLKNL--IFISALNP- 268
            L++  +Y++     IW +Q+L HL    ++ S  +P P     ++L+ L  +F+    P 
Sbjct: 823  LDLKHTYINILPNSIWKIQQLRHLYLSESYRSKFMPQPRVGSLTNLQTLWGLFVDEETPV 882

Query: 269  -------------NLSCY------------HSGVSNSLLGLHKLECLKLVNES------- 296
                          L+C                V+N +L L  L  L+L ++        
Sbjct: 883  KDGLDRLVNLKKLGLTCRLMPSQQQAMLAQLEAVANWVLKLDHLHTLRLKSDDGENQPGD 942

Query: 297  ----------KLSRVV--------LSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQV 338
                      KLS +         L  ++ P SLS L+LS + L +DP+  ++KLP L++
Sbjct: 943  LDLKPLSGLEKLSSIYLLGRLKNPLVVFESPESLSDLTLSGSGLTEDPLQKLDKLPNLKI 1002

Query: 339  LKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
            L+L   SY+G+ + C  S  FP+L VL L  +   +EW +  GA+  L  L +  C  L
Sbjct: 1003 LRLLAKSYMGKNMLC-SSGGFPQLRVLKLWKLEELEEWNVEEGALRALRDLEIRSCPRL 1060

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433948|ref|XP_002267553.1| PREDICTED: putative disease resistance protein At1g59780-like [Vitis vinifera]

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 211/470 (44%), Gaps = 86/470 (18%)

Query: 13   ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNS-----EETAEHYLKELIHR 67
            +L  ++K C  Y  +FP  + I  R+L  LW+AEG +Q        E+ AE YL +LI +
Sbjct: 551  DLPLYMKRCLFYFGLFPKDLDIPARRLIMLWVAEGLVQPEGGNEAPEDVAERYLIKLIAQ 610

Query: 68   GFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLAN----VKRCFIL 123
            G  QV++++  GT+K C +P ++    L   ++  F+    K    L+     ++R    
Sbjct: 611  GMVQVTQKKLDGTVKTCRLPYVLQQEWLAKTQEATFLQYHAKTRSELSPSTGLIRRLVDH 670

Query: 124  EDLIEFIFLEQSG-------------MYLQSFLNHSSESDHLALIDCENFCEK------F 164
             D  +  F    G               + SFL+  +        D  NF  +      F
Sbjct: 671  LDNEDVSFGHIHGDENTTSTSLKPHYQDVLSFLSFDAREGSKPGEDVGNFLHECISSSCF 730

Query: 165  KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVD 224
              LR+L+L +    + P  L  L  L+++ L    L+ LPS +  + NLQTL++  +Y+D
Sbjct: 731  LLLRVLDLEHVFRPKLPKQLGKLTRLRYIGLRWTFLQMLPSSISKLQNLQTLDLKHTYID 790

Query: 225  HSLEDIWMMQKLMHL----NFGSITLPAPPKNYSSSLKNL--IFISALNP---------- 268
                 IW +Q+L HL    ++ S  +  P     +SL+ L  +F+    P          
Sbjct: 791  TLPSSIWKVQQLRHLYLSESYRSKFMLRPRVGSLTSLQTLWGLFVDEETPVKNGLDRLVN 850

Query: 269  ----NLSCYHS------------GVSNSLLGLHKLECLKLVNE----------------- 295
                +L+C  +             VSN +L L+ L+ L+L ++                 
Sbjct: 851  IRKLSLTCRLTPSQDEAMLQQLEAVSNWVLKLNHLQSLRLKSDDADNQPWDLDLKPLSGH 910

Query: 296  SKLSRVVLSKY--------QFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYL 347
            + LSRV L           +FP SL+ L+LS + L +DPM  ++KLP L++L+L   SY+
Sbjct: 911  ANLSRVYLLGRLKNPSIVSEFPESLTDLTLSGSRLTEDPMQTLDKLPNLKILRLLSKSYV 970

Query: 348  GRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
            G+++ C     FPKL +L L  +   +EW +  GA+  L  L +  C  L
Sbjct: 971  GKEMLC-SLGGFPKLRILKLWKLELLEEWNVEEGALQALHDLEIRSCLKL 1019

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734140|emb|CBI15387.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 167/389 (42%), Gaps = 113/389 (29%)

Query: 13  ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNS----EETAEHYLKELIHRG 68
           +L ++LK+C +Y  +FP   +IS R+L  LW+AEGF+Q       E+ AE YL+EL+ R 
Sbjct: 244 DLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELVGRS 303

Query: 69  FFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLANVKRCFILEDLIE 128
             QV+ R++ G IK C      + SLL                        CF   D+ E
Sbjct: 304 MIQVATRKSNGRIKTC------FRSLL------------------------CF---DICE 330

Query: 129 FIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLI 188
             F E                             KFK LR+L+L    + +    + NLI
Sbjct: 331 PSFQE---------------------------LRKFKLLRILDLEGVYISRLHSSIGNLI 363

Query: 189 LLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPA 248
            L++L L    LK LP  +  +LNLQTL++ S+ ++     IW MQKL HL F  +    
Sbjct: 364 HLRYLGLRGTWLKKLPPSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYFNEL---- 419

Query: 249 PPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQF 308
                                            + LH             +R +     F
Sbjct: 420 -------------------------------EEMALH-------------TRDLFDAEYF 435

Query: 309 PLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLK 368
           P +L+ LSL  + LM+DPM  +E L  L+VLKLK ++YLG+++ C     FP+L  L L 
Sbjct: 436 PQNLTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMIC-SCGGFPQLHFLKLS 494

Query: 369 SMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
            +   + W +  GAM +L  L +  C  L
Sbjct: 495 FLNTVERWRIEDGAMGRLRQLEIIECKRL 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum] gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum]

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 191/420 (45%), Gaps = 47/420 (11%)

Query: 14  LSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNS----EETAEHYLKELIHRGF 69
           L +  KAC +Y   FP    I  R+L +LWIAEGFIQY      E  AE YL EL++R  
Sbjct: 403 LPYDWKACFLYFGTFPRGYLIPARKLIRLWIAEGFIQYRGDLSPECKAEEYLNELVNRNL 462

Query: 70  FQVSKRRAGGTIKACYVPSLVYYSLLLVA--EKTRFVLMPDKEEESLANV---KRCFILE 124
             V +R   G IK C V  ++Y      A  E+  F  +    E+S+  V   +R  I  
Sbjct: 463 VMVMQRTVDGQIKTCRVHDMLYEFCWQEATTEENLFHEVKFGGEQSVREVSTHRRLCIHS 522

Query: 125 DLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGL 184
            ++EFI  + SG +++SFL  S E          N  + F  LR+ +     +++F    
Sbjct: 523 SVVEFISKKPSGEHVRSFLCFSPEKIDTPPTVSANISKAFPLLRVFDTESIKINRFCKEF 582

Query: 185 ENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMH-LNFG 242
             L  L+++  +  S+K +P  +  + N+QTL + +  ++  ++ DI  M +L H L   
Sbjct: 583 FQLYHLRYIAFSFDSIKVIPKHVGELWNVQTLIVNTQQINLDIQADILNMPRLRHLLTNT 642

Query: 243 SITLP--APPKNYSSSLKN--LIFISALNPNLSCYHSGVS-------------------- 278
           S  LP  A PK   ++L N  L  +S + P  SC    +S                    
Sbjct: 643 SAKLPALANPKTSKTTLVNQSLQTLSTIAPE-SCTEYVLSRAPNLKKLGIRGKIAKLMEP 701

Query: 279 ------NSLLGLHKLECLKLVNESKLSRVVLS---KYQFPLSLSHLSLSNTELMQDPMPI 329
                 N++  L  LE LKL+N  ++ +  L       FP  L  L+L +T L  D M +
Sbjct: 702 SQSVLLNNVKRLQFLENLKLINVGQIDQTQLRLPPASIFPTKLRKLTLLDTWLEWDDMSV 761

Query: 330 MEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESL 389
           +++L  LQVLKLK N++ G     +    FP L VL ++       W       P+L+ L
Sbjct: 762 LKQLENLQVLKLKDNAFKGENWE-LNDGGFPFLQVLCIERANLV-SWNASGDHFPRLKHL 819

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577223|ref|XP_002529494.1| conserved hypothetical protein [Ricinus communis] gi|223531052|gb|EEF32904.1| conserved hypothetical protein [Ricinus communis]

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 209/469 (44%), Gaps = 86/469 (18%)

Query: 14   LSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFI-QYNSEETAEHY----LKELIHRG 68
            L  +L+ C  Y  +FP   ++  R+L  LW+AEG+  + N EET EH     L EL++R 
Sbjct: 599  LPLYLRRCLFYFRLFPEHFEVPMRRLIGLWVAEGYGHKKNDEETPEHVSEKCLIELVNRN 658

Query: 69   FFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRFVL----MPDKEEESLANVKR-CFIL 123
              QV+K++  G IK C +P  +    LL ++K  F+     + D    S   V R    L
Sbjct: 659  MIQVTKKKMNGKIKTCRLPDALRVHWLLKSKKANFLQHNGHIGDSLSTSSGTVHRLADHL 718

Query: 124  E------DLIEFIFLEQSGMY-----LQSFLNHSSESDHLALIDCENFCEK------FKY 166
            +      D I       S +Y       SFL+  +        D  NF ++      F  
Sbjct: 719  DHRHPSFDHIHGNNASPSSLYSCYRETVSFLSFDTREGSRPGEDVGNFIQRCISSKCFSA 778

Query: 167  LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS 226
            L +L+L +    + P  +  L  L++  L    L+ LP  +  +L LQTL++ +++++  
Sbjct: 779  LWVLDLEHVYKPKLPKAVGQLTRLRYFGLRSTYLEMLPLFINKLLKLQTLDLKNTHINAL 838

Query: 227  LEDIWMMQKLMH--LNFGS-----------------------ITLPAPPKNYSSSLKNL- 260
               IWMMQ L H  L+ GS                       +   +P ++   +  N+ 
Sbjct: 839  PSSIWMMQDLQHLFLDEGSCCRFVPRPKGSCLEDIQTLWGAFVDEDSPVRDGLDTFLNIK 898

Query: 261  -------IFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVV------LSKY- 306
                   I  ++ N  +S     V++ +L L  L+ LKL + ++L +        LS + 
Sbjct: 899  KLGLTCKISEASHNEKMSSQLDAVASWVLKLDHLQSLKLKSFNELGQPADIHLESLSGHL 958

Query: 307  ------------------QFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG 348
                              +FP +L  L+LS + L++DPM ++ +LP L  L+L   S+ G
Sbjct: 959  DLSSMHLVGNLKNPNVVSEFPQNLMMLTLSASGLVEDPMQMLAQLPNLINLRLFCGSFTG 1018

Query: 349  RKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
            +K+ C  S +FPKL VL L  +   +EW +  GAMP L+ L +  C  L
Sbjct: 1019 QKMVCT-SRAFPKLRVLKLWELDPLEEWNIEEGAMPGLKCLEIRSCRNL 1066

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.246	0.108	0.33	7.7e-18
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.455	0.199	0.290	1.1e-16
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.463	0.202	0.284	2.5e-16
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.465	0.176	0.295	5.3e-16
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.465	0.176	0.295	5.3e-16
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.460	0.179	0.317	5.2e-15
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.460	0.179	0.317	5.2e-15
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.397	0.186	0.275	1.2e-14
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.224	0.098	0.4	3.7e-14
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.783	0.372	0.231	1.4e-13

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 7.7e-18, Sum P(3) = 7.7e-18
 Identities = 33/100 (33%), Positives = 60/100 (60%)

Query:   298 LSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSS 357
             LS++   ++Q P  ++H+ L    + +DPMPI+EKL  L+ ++L++ +++GR++ C    
Sbjct:   750 LSKIP-DQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC-SKG 807

Query:   358 SFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
              FP+L  L +      +EW +  G+MP L  LI++ C  L
Sbjct:   808 GFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKL 847

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 56/193 (29%), Positives = 93/193 (48%)

Query:   210 ILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALN-- 267
             ++NL+ L   S+    S+ D+  M KL +L   S++     +  SSSL+ L  +  LN  
Sbjct:   671 LVNLEYLWYFSTQ-HSSVTDLLRMTKLRNLGV-SLSERCNFETLSSSLRELRNLEMLNVL 728

Query:   268 --PNLSCY-HSGVSNSXXXXXXXXXXXXVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ 324
               P +    H G                V  SK+      ++QFP  L+H+ L +  + +
Sbjct:   729 FSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIP----DQHQFPPHLAHIHLVHCVMKE 784

Query:   325 DPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMP 384
             DPMPI+EKL  L+ + L   +++GR++ C     FP+L  L +      +EW +  G+MP
Sbjct:   785 DPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQLCALGISGESELEEWIVEEGSMP 843

Query:   385 KLESLIVNPCAYL 397
              L +L ++ C  L
Sbjct:   844 CLRTLTIHDCEKL 856

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 54/190 (28%), Positives = 93/190 (48%)

Query:   210 ILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNP- 268
             ++NL+ L   S+    S+ D+  M KL +L   S++     +  SSSL+ L  +  LN  
Sbjct:   671 LVNLEYLYGFSTQ-HSSVTDLLRMTKLRYLAV-SLSERCNFETLSSSLRELRNLETLNFL 728

Query:   269 -NLSCYHSGVSNSXXXXXXXXXXXXVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPM 327
              +L  Y                       ++S++   ++QFP  L HL L    + +DPM
Sbjct:   729 FSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIP-DQHQFPPHLVHLFLIYCGMEEDPM 787

Query:   328 PIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLE 387
             PI+EKL  L+ ++L + ++LG ++ C     FP+L V+ +      +EW +  G+MP L 
Sbjct:   788 PILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQLCVIEISKESELEEWIVEEGSMPCLR 846

Query:   388 SLIVNPCAYL 397
             +L ++ C  L
Sbjct:   847 TLTIDDCKKL 856

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
 Identities = 57/193 (29%), Positives = 97/193 (50%)

Query:   207 LCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL 266
             L  ++ L+TL+  S+  + SLED+  M +L  L    +      +  ++S+  L ++ +L
Sbjct:   677 LSNLVKLETLKNFSTK-NCSLEDLRGMVRLRTLTI-ELRKETSLETLAASIGGLKYLESL 734

Query:   267 NPNLSCYHSGVSNSXXXXXXXXXXXXVNESKLSRVVLSKYQ-FPLSLSHLSLSNTELMQD 325
                ++   S +                   KL    LSK Q FP  L+ L L +  L +D
Sbjct:   735 T--ITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEED 792

Query:   326 PMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY-WQDEWTMGAGAMP 384
             PMPI+EKL +L+ L+L++ S+ G+++ C  S  FP+L  L +K +  W+D W +   +MP
Sbjct:   793 PMPILEKLHQLKELELRRKSFSGKEMVC-SSGGFPQLQKLSIKGLEEWED-WKVEESSMP 850

Query:   385 KLESLIVNPCAYL 397
              L +L +  C  L
Sbjct:   851 VLHTLDIRDCRKL 863

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
 Identities = 57/193 (29%), Positives = 97/193 (50%)

Query:   207 LCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL 266
             L  ++ L+TL+  S+  + SLED+  M +L  L    +      +  ++S+  L ++ +L
Sbjct:   677 LSNLVKLETLKNFSTK-NCSLEDLRGMVRLRTLTI-ELRKETSLETLAASIGGLKYLESL 734

Query:   267 NPNLSCYHSGVSNSXXXXXXXXXXXXVNESKLSRVVLSKYQ-FPLSLSHLSLSNTELMQD 325
                ++   S +                   KL    LSK Q FP  L+ L L +  L +D
Sbjct:   735 T--ITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEED 792

Query:   326 PMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY-WQDEWTMGAGAMP 384
             PMPI+EKL +L+ L+L++ S+ G+++ C  S  FP+L  L +K +  W+D W +   +MP
Sbjct:   793 PMPILEKLHQLKELELRRKSFSGKEMVC-SSGGFPQLQKLSIKGLEEWED-WKVEESSMP 850

Query:   385 KLESLIVNPCAYL 397
              L +L +  C  L
Sbjct:   851 VLHTLDIRDCRKL 863

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
 Identities = 62/195 (31%), Positives = 92/195 (47%)

Query:   207 LCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL 266
             L  ++ L+TLE  S+  + SLED+  M +L  LN   I      +  ++S+  L ++   
Sbjct:   669 LSNLVKLETLENFSTE-NSSLEDLCGMVRLSTLNIKLIE-ETSLETLAASIGGLKYLE-- 724

Query:   267 NPNLSCYHSGVSNSXXXXXXXXXXXXVNES--KLSRVVLSKYQ-FPLSLSHLSLSNTELM 323
                L  Y  G                +     KL    LS  Q FP  L+ L L +  L 
Sbjct:   725 --KLEIYDHGSEMRTKEAGIVFDFVHLKRLWLKLYMPRLSTEQHFPSHLTTLYLESCRLE 782

Query:   324 QDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL-KSMYWQDEWTMGAGA 382
             +DPMPI+EKL +L+ L+L   S+ G+K+ C  S  FP+L  L L K   W+D W +   +
Sbjct:   783 EDPMPILEKLLQLKELELGFESFSGKKMVC-SSGGFPQLQRLSLLKLEEWED-WKVEESS 840

Query:   383 MPKLESLIVNPCAYL 397
             MP L +L +  C  L
Sbjct:   841 MPLLRTLDIQVCRKL 855

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
 Identities = 62/195 (31%), Positives = 92/195 (47%)

Query:   207 LCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL 266
             L  ++ L+TLE  S+  + SLED+  M +L  LN   I      +  ++S+  L ++   
Sbjct:   669 LSNLVKLETLENFSTE-NSSLEDLCGMVRLSTLNIKLIE-ETSLETLAASIGGLKYLE-- 724

Query:   267 NPNLSCYHSGVSNSXXXXXXXXXXXXVNES--KLSRVVLSKYQ-FPLSLSHLSLSNTELM 323
                L  Y  G                +     KL    LS  Q FP  L+ L L +  L 
Sbjct:   725 --KLEIYDHGSEMRTKEAGIVFDFVHLKRLWLKLYMPRLSTEQHFPSHLTTLYLESCRLE 782

Query:   324 QDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL-KSMYWQDEWTMGAGA 382
             +DPMPI+EKL +L+ L+L   S+ G+K+ C  S  FP+L  L L K   W+D W +   +
Sbjct:   783 EDPMPILEKLLQLKELELGFESFSGKKMVC-SSGGFPQLQRLSLLKLEEWED-WKVEESS 840

Query:   383 MPKLESLIVNPCAYL 397
             MP L +L +  C  L
Sbjct:   841 MPLLRTLDIQVCRKL 855

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
 Identities = 48/174 (27%), Positives = 86/174 (49%)

Query:    10 SVWELSF----H-LKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSE----ETAEHY 60
             +V++LSF    H LK C +Y  VFP   +I   +L  L +AEGFIQ + E    + A  Y
Sbjct:   404 TVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVARCY 463

Query:    61 LKELIHRGFFQVSKRRAGGTIKACYVPXXXXXXXXXXAEKTRFVLMPDKEEESLANVKRC 120
             + EL+ R   + ++R   G + +C +           A++  FV + ++++ S +++ R 
Sbjct:   464 IDELVDRSLVK-AERIERGKVMSCRIHDLLRDLAIKKAKELNFVNVYNEKQHS-SDICRR 521

Query:   121 FILEDLIEFIFL--EQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNL 172
              ++  L+   +L   +    ++SFL    E      ++  N   K K LR+LN+
Sbjct:   522 EVVHHLMNDYYLCDRRVNKRMRSFL-FIGERRGFGYVNTTNL--KLKLLRVLNM 572

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 3.7e-14, Sum P(3) = 3.7e-14
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query:   308 FPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL 367
             FP  L+ + LS   L +DPMPI+EKL  L+ + L + SY GR++ C G   FP+L  L +
Sbjct:   769 FPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSGGG-FPQLKKLEI 827

Query:   368 KSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397
               +   +EW +  G+MP LE+L +  C  L
Sbjct:   828 VGLNKWEEWLVEEGSMPLLETLSILDCEEL 857

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 77/332 (23%), Positives = 136/332 (40%)

Query:    13 ELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSE----ETAEHYLKELIHRG 68
             EL    K C +YL +FP   +I   +L  L +AEGFIQ + E    + A +Y++ELI R 
Sbjct:   412 ELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRS 471

Query:    69 FFQVSKRRAGGTIKACYVPXXXXXXXXXXAEKTRFVLMPDKE--EESLANVKRCFILEDL 126
               + + RR  G + +C +           +++  FV + +    + S    +R  +    
Sbjct:   472 LLE-AVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQF 530

Query:   127 IEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPXXXXX 186
               +   ++    ++SFL +  E DHL  +D E      K LR+L+ G   L         
Sbjct:   531 KRYSSEKRKNKRMRSFL-YFGEFDHLVGLDFETL----KLLRVLDFGSLWLPFKINGDLI 585

Query:   187 XXXXXXXXXXXPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHL--NFGSI 244
                         +   + +++  +  LQTL +  +Y      D+  +  L H+  NF   
Sbjct:   586 HLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHVIGNFFGG 645

Query:   245 TLPAPPKNYSSSLKNLIFIS--ALNPNL--SCYHSGVSNSXXXXXXXXXXXXVNESKLSR 300
              L     N  + L ++ F S   L P L  +    G+S               + +KL  
Sbjct:   646 LLIGDVANLQT-LTSISFDSWNKLKPELLINLRDLGISEMSRSKERRVHVSWASLTKLES 704

Query:   301 VVLSKYQFPLSLSHLSLSNTELMQDPMPIMEK 332
             + + K   P  + HLSL + E ++  M ++ +
Sbjct:   705 LRVLKLATPTEV-HLSLESEEAVRS-MDVISR 734

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	0.004

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 2   FDILSRTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQ 50
             ILS   S   L  HLK C +YL +FP    I   QL +LWIAEGF+ 
Sbjct: 235 LSILS--LSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.65
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.45
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.44
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.4
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.36
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.29
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.81
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.8
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.74
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.74
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.68
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.55
PLN03150	623	hypothetical protein; Provisional	98.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.5
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.32
PLN03150	623	hypothetical protein; Provisional	98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.2
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.14
PRK15386	426	type III secretion protein GogB; Provisional	98.12
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.08
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.06
PRK15386	426	type III secretion protein GogB; Provisional	98.04
KOG4341	483	consensus F-box protein containing LRR [General fu	98.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
KOG4341	483	consensus F-box protein containing LRR [General fu	97.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.7
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.11
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.94
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.89
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.86
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.47
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.42
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.22
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.15
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.67
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.66
smart00370	26	LRR Leucine-rich repeats, outliers.	91.66
smart00370	26	LRR Leucine-rich repeats, outliers.	90.26
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.26
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.38
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.36

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-45  Score=374.25  Aligned_cols=381  Identities=23%  Similarity=0.310  Sum_probs=292.5

Q ss_pred             ccc-cccccccchhhhHHHHhhhccCCCCCccChHHHHHHHHhcCCCC----C-CHHHHHHHHHHHHHhCCceeeEecCC
Q 045321            4 ILS-RTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQ----Y-NSEETAEHYLKELIHRGFFQVSKRRA   77 (397)
Q Consensus         4 il~-L~lSY~~L~~~lk~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~----~-~~~~~~~~~~~~L~~~~ll~~~~~~~   77 (397)
                      |++ |++|||.||.++|.||+|||+|||||+|++++||.+|+||||+.    | ++++.|+.|+.+|+.+++++..... 
T Consensus       397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~-  475 (889)
T KOG4658|consen  397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE-  475 (889)
T ss_pred             hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc-
Confidence            456 79999999988999999999999999999999999999999997    3 8899999999999999999987754 


Q ss_pred             CCceeEEEeCHHHHHHHHHHhc-----cCCeEEecCCC-----CCC-CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEe
Q 045321           78 GGTIKACYVPSLVYYSLLLVAE-----KTRFVLMPDKE-----EES-LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNH  145 (397)
Q Consensus        78 ~~~~~~~~mhdli~dl~~~~~~-----~~~~~~~~~~~-----~~~-~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~  145 (397)
                       ++...|+|||+|+|||.++|.     +++.+...+..     +.. +..+|++++. +........ ..+++|++|.+.
T Consensus       476 -~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tLll~  553 (889)
T KOG4658|consen  476 -GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTLLLQ  553 (889)
T ss_pred             -cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe-ccchhhccCCCCCCccceEEEe
Confidence             566889999999999999998     66655443211     111 6789999999 555555555 777799999999


Q ss_pred             CCCCccccccch-hHHhcCCCeeEEEEcCCCC-cccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCc-c
Q 045321          146 SSESDHLALIDC-ENFCEKFKYLRLLNLGYAV-LDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSS-Y  222 (397)
Q Consensus       146 ~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~  222 (397)
                      .+...   ...+ ..+|..++.|||||+++|. +.++|++|++|.+||||+++++.++.+|.++++|..|++|++..+ .
T Consensus       554 ~n~~~---l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  554 RNSDW---LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR  630 (889)
T ss_pred             ecchh---hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence            88630   1144 6777999999999999877 789999999999999999999999999999999999999999999 6


Q ss_pred             cccchhhhhccccCcEEEecCCCC---CCCCCccccCCCCCcEEEcCCCee-------------------eEE---eccH
Q 045321          223 VDHSLEDIWMMQKLMHLNFGSITL---PAPPKNYSSSLKNLIFISALNPNL-------------------SCY---HSGV  277 (397)
Q Consensus       223 l~~lp~~~~~L~~L~~L~l~~~~~---~~~~p~~i~~l~~L~~l~l~~~~L-------------------~i~---~~~~  277 (397)
                      +..+|.....|++||+|.+. ...   .......+.++++|+.+....+..                   .+.   ....
T Consensus       631 l~~~~~i~~~L~~Lr~L~l~-~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~  709 (889)
T KOG4658|consen  631 LESIPGILLELQSLRVLRLP-RSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTL  709 (889)
T ss_pred             cccccchhhhcccccEEEee-ccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccccee
Confidence            66666667779999999997 432   112223345566666655443211                   000   2344


Q ss_pred             HhhhcCCCCCcEEEeecCCCee----------EEE----e---------------ccCCCCCCceEEEEecccCCCCCcc
Q 045321          278 SNSLLGLHKLECLKLVNESKLS----------RVV----L---------------SKYQFPLSLSHLSLSNTELMQDPMP  328 (397)
Q Consensus       278 ~~~l~~l~~L~~L~l~~~~~L~----------~L~----l---------------~~~~~l~~L~~L~L~~~~l~~~~~~  328 (397)
                      +.++..+.+|+.|.+..|...+          .+.    +               |... +|+|+.|.+..|...+.+++
T Consensus       710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f-~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  710 ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF-APHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc-cCcccEEEEecccccccCCC
Confidence            5566778889999988863211          110    0               3333 88999999999987777888


Q ss_pred             ccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECC----Cccccccccccccc
Q 045321          329 IMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGA----GAMPKLESLIVNPC  394 (397)
Q Consensus       329 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~p~L~~L~i~~C  394 (397)
                      ....+..++.+.+..+.+.+..+... .++|+++..+.+... .+++|.+..    +.+|.+..+.|.+|
T Consensus       789 ~~k~~~~l~~~i~~f~~~~~l~~~~~-l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~  856 (889)
T KOG4658|consen  789 KLKALLELKELILPFNKLEGLRMLCS-LGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGC  856 (889)
T ss_pred             HHHHhhhcccEEecccccccceeeec-CCCCceeEecccCcc-chhheehhcCcccccCccccccceecc
Confidence            88778878777776666666544455 677888777777763 377776665    67888888888886

>PLN03210 Resistant to P

Probab=100.00  E-value=5.4e-34  Score=304.75  Aligned_cols=368  Identities=18%  Similarity=0.132  Sum_probs=235.1

Q ss_pred             ccc-cccccccchh-hhHHHHhhhccCCCCCccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCceeeEecCCCCce
Q 045321            4 ILS-RTCSVWELSF-HLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTI   81 (397)
Q Consensus         4 il~-L~lSY~~L~~-~lk~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~   81 (397)
                      |.+ |++|||+|++ ..|.||++|||||.++.+   +.+..|+|.+.+.      ++..++.|+++||++...       
T Consensus       422 I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------  485 (1153)
T PLN03210        422 IEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------  485 (1153)
T ss_pred             HHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------
Confidence            445 7999999987 499999999999998654   3467788776552      344589999999998743       


Q ss_pred             eEEEeCHHHHHHHHHHhccCC-------eEEecCC------CCCCCCCeEEEEEEeCccchh--hcc--CCCCCeeEEEE
Q 045321           82 KACYVPSLVYYSLLLVAEKTR-------FVLMPDK------EEESLANVKRCFILEDLIEFI--FLE--QSGMYLQSFLN  144 (397)
Q Consensus        82 ~~~~mhdli~dl~~~~~~~~~-------~~~~~~~------~~~~~~~~r~L~l~~~~~~~~--~~~--~~~~~Lr~L~~  144 (397)
                      ..++|||++++||+++++++.       +.....+      ......+++++++......+.  ...  ..+++|+.|.+
T Consensus       486 ~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~  565 (1153)
T PLN03210        486 DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF  565 (1153)
T ss_pred             CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence            358999999999999997653       1111000      000045677776653222221  111  56777777766


Q ss_pred             eCCCCcc--------------------------ccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCC
Q 045321          145 HSSESDH--------------------------LALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIP  198 (397)
Q Consensus       145 ~~~~~~~--------------------------~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~  198 (397)
                      .......                          .+...++..| .+++|++|++.++.++.+|..+..+++|++|+++++
T Consensus       566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~  644 (1153)
T PLN03210        566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGS  644 (1153)
T ss_pred             ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCC
Confidence            5432100                          0011222221 356788888888888888888888899999999876


Q ss_pred             C-CcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCCC-CCCCCccccCCCCCcEEEcCCCe------
Q 045321          199 S-LKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSITL-PAPPKNYSSSLKNLIFISALNPN------  269 (397)
Q Consensus       199 ~-i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~l~l~~~~------  269 (397)
                      . ++.+|. ++.+++|++|++++| .+..+|..++++++|+.|+++ +|. ...+|..+ ++++|+.+++++|.      
T Consensus       645 ~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~-~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        645 KNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS-RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             CCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC-CCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence            4 677774 788899999999988 788899889999999999998 774 66677665 67777777777651      


Q ss_pred             --------eeEE---eccHHhhhcCC-------------------------------CCCcEEEeecCCCeeEEEeccCC
Q 045321          270 --------LSCY---HSGVSNSLLGL-------------------------------HKLECLKLVNESKLSRVVLSKYQ  307 (397)
Q Consensus       270 --------L~i~---~~~~~~~l~~l-------------------------------~~L~~L~l~~~~~L~~L~l~~~~  307 (397)
                              |.+.   ...+|..+ .+                               ++|+.|++++|+.+..++.+++.
T Consensus       722 ~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~  800 (1153)
T PLN03210        722 DISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN  800 (1153)
T ss_pred             cccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC
Confidence                    1111   01111110 01                               12333333333222222223333


Q ss_pred             CCCCceEEEEecccCCCCCccccccC---------------------cCCceEEEecccccCceeEEeCCCCCCCCCEEE
Q 045321          308 FPLSLSHLSLSNTELMQDPMPIMEKL---------------------PRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLH  366 (397)
Q Consensus       308 ~l~~L~~L~L~~~~l~~~~~~~l~~l---------------------~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  366 (397)
                       +++|+.|++++|......+ ....+                     ++|+.|+|+++.+  ..++.. ...+++|+.|+
T Consensus       801 -L~~L~~L~Ls~C~~L~~LP-~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i--~~iP~s-i~~l~~L~~L~  875 (1153)
T PLN03210        801 -LHKLEHLEIENCINLETLP-TGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI--EEVPWW-IEKFSNLSFLD  875 (1153)
T ss_pred             -CCCCCEEECCCCCCcCeeC-CCCCccccCEEECCCCCccccccccccccCEeECCCCCC--ccChHH-HhcCCCCCEEE
Confidence             4555555555543211111 11133                     3455555544433  233444 67789999999


Q ss_pred             EecCCCcCcEEECCCccccccccccccccCC
Q 045321          367 LKSMYWQDEWTMGAGAMPKLESLIVNPCAYL  397 (397)
Q Consensus       367 l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L  397 (397)
                      +.+|++++.++.....+++|+.+++.+|++|
T Consensus       876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        876 MNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             CCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            9999999999888888999999999999875

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=2.8e-22  Score=213.86  Aligned_cols=224  Identities=23%  Similarity=0.281  Sum_probs=123.2

Q ss_pred             CCCeeEEEEcCCCCcc-cccccccCCCCCceEecCCCCCc-ccCccccCCCCCcEEecCCccc-ccchhhhhccccCcEE
Q 045321          163 KFKYLRLLNLGYAVLD-QFPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYV-DHSLEDIWMMQKLMHL  239 (397)
Q Consensus       163 ~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l-~~lp~~~~~L~~L~~L  239 (397)
                      .+++|++|++++|.+. .+|..++++.+|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            4455566666666554 55666666677777777666653 5666666677777777766633 3456666667777777


Q ss_pred             EecCCCCC-CCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEe
Q 045321          240 NFGSITLP-APPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLS  318 (397)
Q Consensus       240 ~l~~~~~~-~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~  318 (397)
                      +++ ++.. ..+|..++++++|+.+++++|.+   ...++..++.+++|+.|+++++.-...++-++.. +++|++|+++
T Consensus       218 ~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls  292 (968)
T PLN00113        218 YLG-YNNLSGEIPYEIGGLTSLNHLDLVYNNL---TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLS  292 (968)
T ss_pred             ECc-CCccCCcCChhHhcCCCCCEEECcCcee---ccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECc
Confidence            776 5543 35666667777777777766655   3456666667777777776653111111112233 4555555555


Q ss_pred             cccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccc
Q 045321          319 NTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNP  393 (397)
Q Consensus       319 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~  393 (397)
                      +|.+....+..++++++|+.|++++|...+.. +.. ...+++|+.|++.++.-...++...+.+++|+.|++++
T Consensus       293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-PVA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             CCeeccCCChhHcCCCCCcEEECCCCccCCcC-Chh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence            55554444444555555555555444433221 222 34455555555555432223333333444455544443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=2.6e-22  Score=214.10  Aligned_cols=224  Identities=21%  Similarity=0.204  Sum_probs=155.2

Q ss_pred             CCCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCCCCce
Q 045321          114 LANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLILLKH  192 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~  192 (397)
                      ..++|++.+..+......+...+++|++|.+.++....    .++..+..+++|++|++++|.+. .+|..++++++|++
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             CCCCCEEECcCCccccccCccccCCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            44566666653322222222456677777777665532    33443488888888888888865 77888888888888


Q ss_pred             EecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhhhhccccCcEEEecCCCCC-CCCCccccCCCCCcEEEcCCCe
Q 045321          193 LKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISALNPN  269 (397)
Q Consensus       193 L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~l~l~~~~  269 (397)
                      |++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|+++ +|.. ..+|..++++++|+.+++++|.
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV-YNNLTGPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc-CceeccccChhHhCCCCCCEEECcCCe
Confidence            888888765 67888888888888888888544 678888888888888888 7653 3677778888888888888876


Q ss_pred             eeEEeccHHhhhcCCCCCcEEEeecC-------------CCeeEEEe-----------ccCCCCCCceEEEEecccCCCC
Q 045321          270 LSCYHSGVSNSLLGLHKLECLKLVNE-------------SKLSRVVL-----------SKYQFPLSLSHLSLSNTELMQD  325 (397)
Q Consensus       270 L~i~~~~~~~~l~~l~~L~~L~l~~~-------------~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~  325 (397)
                      +   ....+.++..+++|+.|++++|             ++|+.|.+           ++.. +++|+.|++++|.+...
T Consensus       272 l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~  347 (968)
T PLN00113        272 L---SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGE  347 (968)
T ss_pred             e---eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCc
Confidence            6   4566777777777888777664             24444444           2334 66777777777766555


Q ss_pred             CccccccCcCCceEEEecccc
Q 045321          326 PMPIMEKLPRLQVLKLKQNSY  346 (397)
Q Consensus       326 ~~~~l~~l~~L~~L~L~~~~~  346 (397)
                      .+..++.+++|+.|++++|..
T Consensus       348 ~p~~l~~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        348 IPKNLGKHNNLTVLDLSTNNL  368 (968)
T ss_pred             CChHHhCCCCCcEEECCCCee
Confidence            555666677777777755544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=3.1e-23  Score=195.57  Aligned_cols=272  Identities=19%  Similarity=0.182  Sum_probs=172.3

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCc
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLK  191 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~  191 (397)
                      ..++.|+++.-+....+.-. ..++.||++++..+...   +..+ +++ -.++.|.+|||++|++.+.|..+..-+++-
T Consensus        54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK---nsGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~i  129 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK---NSGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSI  129 (1255)
T ss_pred             HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc---cCCCCchh-cccccceeeecchhhhhhcchhhhhhcCcE
Confidence            45566666662333332223 67777777777766654   3344 455 567777777777777777777777777777


Q ss_pred             eEecCCCCCcccCccc-cCCCCCcEEecCCcccccchhhhhccccCcEEEecC-----------------------CCC-
Q 045321          192 HLKLNIPSLKCLPSLL-CTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGS-----------------------ITL-  246 (397)
Q Consensus       192 ~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~-----------------------~~~-  246 (397)
                      .|++++|+|+++|.++ -+|+.|-+||+++|.+..+|+.+.+|..|+.|.+++                       ++. 
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence            7777777777776543 356666667777666666666666666666666651                       221 


Q ss_pred             -CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCC
Q 045321          247 -PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQD  325 (397)
Q Consensus       247 -~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~  325 (397)
                       ...+|.++..|.+|..++++.|.|    ..+|+.+.++++|+.|++++ ..+++|....+. ..+|+.|+++.|++ ..
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~L----p~vPecly~l~~LrrLNLS~-N~iteL~~~~~~-W~~lEtLNlSrNQL-t~  282 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENNL----PIVPECLYKLRNLRRLNLSG-NKITELNMTEGE-WENLETLNLSRNQL-TV  282 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccCC----CcchHHHhhhhhhheeccCc-CceeeeeccHHH-Hhhhhhhccccchh-cc
Confidence             344566666667777777776655    56788888888888888887 456666553333 44555555655554 33


Q ss_pred             CccccccCcCCceEEEecccccCceeEE----------------------eCCCCCCCCCEEEEecCCCcCcEEECCCcc
Q 045321          326 PMPIMEKLPRLQVLKLKQNSYLGRKLAC----------------------VGSSSFPKLTVLHLKSMYWQDEWTMGAGAM  383 (397)
Q Consensus       326 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~----------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  383 (397)
                      .+..+..++.|+.|.+.+|...-+.+++                      .|...+++|+.|.++. +.+..+|....-+
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL  361 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLL  361 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhc
Confidence            4444555555555555333332222222                      2356677788888874 5577777777788


Q ss_pred             ccccccccccccCC
Q 045321          384 PKLESLIVNPCAYL  397 (397)
Q Consensus       384 p~L~~L~i~~C~~L  397 (397)
                      |.|+.|+++..|+|
T Consensus       362 ~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  362 PDLKVLDLRENPNL  375 (1255)
T ss_pred             CCcceeeccCCcCc
Confidence            99999999888875

>PLN03210 Resistant to P

Probab=99.78  E-value=2.4e-18  Score=184.93  Aligned_cols=268  Identities=19%  Similarity=0.154  Sum_probs=156.5

Q ss_pred             CCCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCC-cccccccccCCCCCc
Q 045321          114 LANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAV-LDQFPLGLENLILLK  191 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~-i~~lp~~~~~l~~L~  191 (397)
                      +.++|.+.+........+....+.+|+.|.+.++...     .+ ..+ ..+++|++|+++++. +..+|. ++.+++|+
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-----~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le  660 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-----KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLE  660 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-----cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence            4567777776332223222245566777776665543     23 233 556666666666554 444443 55566666


Q ss_pred             eEecCCCC-CcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCC---------------------CCC
Q 045321          192 HLKLNIPS-LKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSIT---------------------LPA  248 (397)
Q Consensus       192 ~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~---------------------~~~  248 (397)
                      +|++++|. +.++|.+++++++|+.|++++| .+..+|..+ ++++|+.|+++ +|                     ...
T Consensus       661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls-gc~~L~~~p~~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS-GCSRLKSFPDISTNISWLDLDETAIE  738 (1153)
T ss_pred             EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC-CCCCccccccccCCcCeeecCCCccc
Confidence            66666543 5566666666666666666666 555565544 45555555555 44                     223


Q ss_pred             CCCccccCCC-------------------------------CCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCC
Q 045321          249 PPKNYSSSLK-------------------------------NLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESK  297 (397)
Q Consensus       249 ~~p~~i~~l~-------------------------------~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~  297 (397)
                      .+|..+ .++                               +|+.+++++|..   ...+|.+++.+++|+.|++++|++
T Consensus       739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~---l~~lP~si~~L~~L~~L~Ls~C~~  814 (1153)
T PLN03210        739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS---LVELPSSIQNLHKLEHLEIENCIN  814 (1153)
T ss_pred             cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCC---ccccChhhhCCCCCCEEECCCCCC
Confidence            333321 122                               344444444322   345778888888888888888765


Q ss_pred             eeEEEecc-------------------CCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCC
Q 045321          298 LSRVVLSK-------------------YQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSS  358 (397)
Q Consensus       298 L~~L~l~~-------------------~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~  358 (397)
                      ++.++...                   ...+.+|+.|+|++|.+ ...+..++.+++|+.|+++++. ....++.. ...
T Consensus       815 L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i-~~iP~si~~l~~L~~L~L~~C~-~L~~l~~~-~~~  891 (1153)
T PLN03210        815 LETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI-EEVPWWIEKFSNLSFLDMNGCN-NLQRVSLN-ISK  891 (1153)
T ss_pred             cCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC-ccChHHHhcCCCCCEEECCCCC-CcCccCcc-ccc
Confidence            55543211                   11134566666666665 3455678889999999996533 23334555 678


Q ss_pred             CCCCCEEEEecCCCcCcEEECC-------------CccccccccccccccCC
Q 045321          359 FPKLTVLHLKSMYWQDEWTMGA-------------GAMPKLESLIVNPCAYL  397 (397)
Q Consensus       359 ~~~L~~L~l~~~~~l~~~~~~~-------------~~~p~L~~L~i~~C~~L  397 (397)
                      +++|+.+.+.+|+++..++...             ..+|....+.+.+|.+|
T Consensus       892 L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L  943 (1153)
T PLN03210        892 LKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNL  943 (1153)
T ss_pred             ccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCC
Confidence            9999999999999987654321             13455556677788765

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.77  E-value=3.7e-21  Score=181.63  Aligned_cols=265  Identities=18%  Similarity=0.122  Sum_probs=184.1

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcc--cccccccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLD--QFPLGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~--~lp~~~~~l~~  189 (397)
                      +..++++.+......+++.. ..+.+|+.|.+..+...     .+ .++ +.++.||.+++..|++.  .+|..|..+..
T Consensus        31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~d  104 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKD  104 (1255)
T ss_pred             hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhh-ccchhhHHHhhhccccccCCCCchhccccc
Confidence            66788888884455565666 88999999999888765     45 566 89999999999999987  78999999999


Q ss_pred             CceEecCCCCCcccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCC
Q 045321          190 LKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNP  268 (397)
Q Consensus       190 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~  268 (397)
                      |..|++++|++++.|..+..-+++-+|++++|++..+|.. +.+|+.|-.|+++ ++....+|+.+.++.+|+++.+++|
T Consensus       105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCCC
Confidence            9999999999999999999999999999999999999987 7789999999999 9999999999999999999999998


Q ss_pred             eeeEEeccHHhhhcCCCCCcEEEeecCC-CeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccccc
Q 045321          269 NLSCYHSGVSNSLLGLHKLECLKLVNES-KLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYL  347 (397)
Q Consensus       269 ~L~i~~~~~~~~l~~l~~L~~L~l~~~~-~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~  347 (397)
                      .|   ...-...+..+++|+.|++++.. .+..++-.+.. +.||..++++.|.+ ...+..+-.+++|+.|+|++|.+.
T Consensus       184 PL---~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~-l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  184 PL---NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD-LHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hh---hHHHHhcCccchhhhhhhcccccchhhcCCCchhh-hhhhhhccccccCC-CcchHHHhhhhhhheeccCcCcee
Confidence            44   11222334455666677777631 11111112222 44444444444443 233333444444444444443331


Q ss_pred             C---------------------ceeEEeCCCCCCCCCEEEEecCC-CcCcEEECCCcccccccccc
Q 045321          348 G---------------------RKLACVGSSSFPKLTVLHLKSMY-WQDEWTMGAGAMPKLESLIV  391 (397)
Q Consensus       348 ~---------------------~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~p~L~~L~i  391 (397)
                      .                     ..++.. ...+++|+.|.+.+.+ ..+.+|.+.|.+..|+.+..
T Consensus       259 eL~~~~~~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  259 ELNMTEGEWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             eeeccHHHHhhhhhhccccchhccchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence            1                     122333 4455666666655432 23455666666655555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.69  E-value=2.5e-20  Score=167.73  Aligned_cols=243  Identities=20%  Similarity=0.219  Sum_probs=179.5

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~  212 (397)
                      ..+..+.++.+..+...     .+ +++ ..+..+..|+.+++++.++|+.++.+..|+.++.+.+.++++|++++.+..
T Consensus        65 ~nL~~l~vl~~~~n~l~-----~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~  138 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLS-----QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD  138 (565)
T ss_pred             hcccceeEEEeccchhh-----hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence            66777777777777654     44 555 777778888888888888888888888888888888888888888888888


Q ss_pred             CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEe
Q 045321          213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKL  292 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l  292 (397)
                      |+.++..++++..+|.+++.+.+|..+++. ++...++|+..-+|+.|+.+++..|-+    +.+|..++.+.+|+.|++
T Consensus       139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~-~n~l~~l~~~~i~m~~L~~ld~~~N~L----~tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  139 LEDLDATNNQISSLPEDMVNLSKLSKLDLE-GNKLKALPENHIAMKRLKHLDCNSNLL----ETLPPELGGLESLELLYL  213 (565)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHhhcc-ccchhhCCHHHHHHHHHHhcccchhhh----hcCChhhcchhhhHHHHh
Confidence            888888888888888888888888888888 777777777766688888887776644    677888888888888887


Q ss_pred             ecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCC
Q 045321          293 VNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYW  372 (397)
Q Consensus       293 ~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  372 (397)
                      .. ..++.++ .|+. +..|++|.+..|++...+.....+++++..|++..|...  +.+.. +.-+.+|++|++++. .
T Consensus       214 ~~-Nki~~lP-ef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk--e~Pde-~clLrsL~rLDlSNN-~  286 (565)
T KOG0472|consen  214 RR-NKIRFLP-EFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK--EVPDE-ICLLRSLERLDLSNN-D  286 (565)
T ss_pred             hh-cccccCC-CCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc--cCchH-HHHhhhhhhhcccCC-c
Confidence            76 4555555 5666 777777777777764444444557777777777655542  33344 556677777777763 4


Q ss_pred             cCcEEECCCcccccccccccccc
Q 045321          373 QDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       373 l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      +..+|...|.+ +|+.|.+.|-|
T Consensus       287 is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  287 ISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             cccCCcccccc-eeeehhhcCCc
Confidence            67777777777 77777766654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.69  E-value=1.3e-18  Score=163.39  Aligned_cols=171  Identities=17%  Similarity=0.140  Sum_probs=94.9

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch--hHHhcCCCeeEEEEcCCCCccccc-ccccCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC--ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLI  188 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l--~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~  188 (397)
                      ...+.+|.+..+....+-.+  ..++.||+|+++.+.+.     .+  +.+ ..-.+++.|+|++|.|+.+- ..+..+.
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-----~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~ln  197 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-----EIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLN  197 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-----cccCCCC-CCCCCceEEeeccccccccccccccccc
Confidence            55577777773333332222  56677777777766554     22  222 44456677777777766442 4556666


Q ss_pred             CCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEc
Q 045321          189 LLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISA  265 (397)
Q Consensus       189 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l  265 (397)
                      +|..|.|+.|+++.+|.- +++|++|+.|+|..|.++.+ .-.+..|++|+.|.+. .+.+..+-++ +-.|.+++++++
T Consensus       198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq-rN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ-RNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh-hcCcccccCcceeeecccceeec
Confidence            667777777777766643 34477777777766655544 2345566666666665 5544444444 233555555555


Q ss_pred             CCCeeeEEeccHHhhhcCCCCCcEEEeec
Q 045321          266 LNPNLSCYHSGVSNSLLGLHKLECLKLVN  294 (397)
Q Consensus       266 ~~~~L~i~~~~~~~~l~~l~~L~~L~l~~  294 (397)
                      ..|.+   ..--..++-+++.|+.|+++.
T Consensus       277 ~~N~l---~~vn~g~lfgLt~L~~L~lS~  302 (873)
T KOG4194|consen  277 ETNRL---QAVNEGWLFGLTSLEQLDLSY  302 (873)
T ss_pred             ccchh---hhhhcccccccchhhhhccch
Confidence            55433   122223444455555555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.65  E-value=7.2e-17  Score=151.83  Aligned_cols=151  Identities=17%  Similarity=0.129  Sum_probs=91.5

Q ss_pred             CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccC-ccccCCCC
Q 045321          135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLP-SLLCTILN  212 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~  212 (397)
                      -.+..++|.++++...     ++ ..+|.++++|+.+++..|.++.+|...+...||+.|+|.+|.|.++. +++..++.
T Consensus        76 lp~~t~~LdlsnNkl~-----~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a  150 (873)
T KOG4194|consen   76 LPSQTQTLDLSNNKLS-----HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA  150 (873)
T ss_pred             Cccceeeeeccccccc-----cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence            3456677777777654     33 44457777777777777777777776666667777777777766543 34556666


Q ss_pred             CcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCC-ccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEE
Q 045321          213 LQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECL  290 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L  290 (397)
                      |++|||+.|.+.++|.. +..-.++++|+++ ++.+..+- ..+..+.+|-++.+++|.+   ..--+.+++++++|+.|
T Consensus       151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNri---ttLp~r~Fk~L~~L~~L  226 (873)
T KOG4194|consen  151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRI---TTLPQRSFKRLPKLESL  226 (873)
T ss_pred             hhhhhhhhchhhcccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcc---cccCHHHhhhcchhhhh
Confidence            77777777766666543 4444566777776 55544332 2355556666666666644   22222345556666665


Q ss_pred             Eeec
Q 045321          291 KLVN  294 (397)
Q Consensus       291 ~l~~  294 (397)
                      ++..
T Consensus       227 dLnr  230 (873)
T KOG4194|consen  227 DLNR  230 (873)
T ss_pred             hccc
Confidence            5543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.64  E-value=2.1e-19  Score=161.77  Aligned_cols=238  Identities=19%  Similarity=0.190  Sum_probs=201.1

Q ss_pred             eeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEe
Q 045321          139 LQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLE  217 (397)
Q Consensus       139 Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~  217 (397)
                      +..+++..+...     .+ +++ .++..|.||++.++.+..+|++++.+..++.++.+++++.++|+.++.+.+|..|+
T Consensus        47 l~~lils~N~l~-----~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLE-----VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchh-----hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence            445556665543     44 777 89999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCC
Q 045321          218 MPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESK  297 (397)
Q Consensus       218 l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~  297 (397)
                      .+++.+.++|++++.+..|..++.. ++....+|++++++.+|..+.+.++++    .++++..-.++.|++|+... .-
T Consensus       121 ~s~n~~~el~~~i~~~~~l~dl~~~-~N~i~slp~~~~~~~~l~~l~~~~n~l----~~l~~~~i~m~~L~~ld~~~-N~  194 (565)
T KOG0472|consen  121 CSSNELKELPDSIGRLLDLEDLDAT-NNQISSLPEDMVNLSKLSKLDLEGNKL----KALPENHIAMKRLKHLDCNS-NL  194 (565)
T ss_pred             ccccceeecCchHHHHhhhhhhhcc-ccccccCchHHHHHHHHHHhhccccch----hhCCHHHHHHHHHHhcccch-hh
Confidence            9999999999999999999999998 888999999999999999999988876    56666665699999988765 45


Q ss_pred             eeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEE
Q 045321          298 LSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWT  377 (397)
Q Consensus       298 L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  377 (397)
                      |+.++-.++. +.+|..|++..|.+  ..++.|..+..|++|+++.|.+..  ++..-...+++|..|++.+. +++++|
T Consensus       195 L~tlP~~lg~-l~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRdN-klke~P  268 (565)
T KOG0472|consen  195 LETLPPELGG-LESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRDN-KLKEVP  268 (565)
T ss_pred             hhcCChhhcc-hhhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHHh--hHHHHhcccccceeeecccc-ccccCc
Confidence            6666656777 88999999999986  455689999999999996666532  22221457899999999985 699999


Q ss_pred             ECCCccccccccccccc
Q 045321          378 MGAGAMPKLESLIVNPC  394 (397)
Q Consensus       378 ~~~~~~p~L~~L~i~~C  394 (397)
                      .+..-+.+|++|++++-
T Consensus       269 de~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNN  285 (565)
T ss_pred             hHHHHhhhhhhhcccCC
Confidence            98888899999998864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=1.4e-17  Score=133.65  Aligned_cols=168  Identities=19%  Similarity=0.260  Sum_probs=139.0

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~  212 (397)
                      ..+++...|.++.+...     .+ +.+ ..+++|++|++++|+|+++|.+++.+++||.|++.-|++..+|..++.++.
T Consensus        30 f~~s~ITrLtLSHNKl~-----~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~  103 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-----VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA  103 (264)
T ss_pred             cchhhhhhhhcccCcee-----ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence            45566666666666553     34 666 889999999999999999999999999999999999999999999999999


Q ss_pred             CcEEecCCc--ccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEE
Q 045321          213 LQTLEMPSS--YVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECL  290 (397)
Q Consensus       213 L~~L~l~~~--~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L  290 (397)
                      |++||++++  +-..+|..+-.|..|+-|+++ .+.-..+|+.+|++++||.+.+.++.|    -.+|..++.+..|++|
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~-dndfe~lp~dvg~lt~lqil~lrdndl----l~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLG-DNDFEILPPDVGKLTNLQILSLRDNDL----LSLPKEIGDLTRLREL  178 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhc-CCCcccCChhhhhhcceeEEeeccCch----hhCcHHHHHHHHHHHH
Confidence            999999998  455688888889999999998 887888999999999999999988755    6688899999999999


Q ss_pred             EeecCCCeeEEEeccCCCCCCceEEEEecc
Q 045321          291 KLVNESKLSRVVLSKYQFPLSLSHLSLSNT  320 (397)
Q Consensus       291 ~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~  320 (397)
                      ++.+ ..|+.+       +|-|..|++.++
T Consensus       179 hiqg-nrl~vl-------ppel~~l~l~~~  200 (264)
T KOG0617|consen  179 HIQG-NRLTVL-------PPELANLDLVGN  200 (264)
T ss_pred             hccc-ceeeec-------Chhhhhhhhhhh
Confidence            9987 455555       555666666555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.50  E-value=5.6e-16  Score=152.92  Aligned_cols=264  Identities=19%  Similarity=0.207  Sum_probs=166.8

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH  192 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~  192 (397)
                      ....+++....+... .... ....+++++.++.+...     .++++...+.+|..++..+|.+..+|..+.....|++
T Consensus       218 g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~-----~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~  291 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLS-----NLPEWIGACANLEALNANHNRLVALPLRISRITSLVS  291 (1081)
T ss_pred             CcchheeeeccCcce-eeccccccccceeeecchhhhh-----cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH
Confidence            345555555522222 1222 56677777877777664     4566668888888888888888888888888888888


Q ss_pred             EecCCCCCcccCccccCCCCCcEEecCCcccccchhhh-hccc-cCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCe
Q 045321          193 LKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDI-WMMQ-KLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPN  269 (397)
Q Consensus       193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~-~~L~-~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~  269 (397)
                      |+...|.++.+|+..+.+++|++|++..+++..+|+.+ ..+. +|+.|+.+ .+.....|.. =..+..|+.|++.+|.
T Consensus       292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             HHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCc
Confidence            88888888888888888888888888888888888752 2222 36666655 4444444421 1225566667777776


Q ss_pred             eeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321          270 LSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       270 L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                      |   .+.....+..+++|+.|+++. ..|.+++- .+.+ ++.|++|+|++|++. ..+..+..++.|++|..-+|+.  
T Consensus       371 L---td~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~k-le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l--  442 (1081)
T KOG0618|consen  371 L---TDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRK-LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL--  442 (1081)
T ss_pred             c---cccchhhhccccceeeeeecc-cccccCCHHHHhc-hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce--
Confidence            6   566777778888888888876 33444332 2334 666777777777753 3445566666666666633333  


Q ss_pred             ceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcc-cccccccccccc
Q 045321          349 RKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAM-PKLESLIVNPCA  395 (397)
Q Consensus       349 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-p~L~~L~i~~C~  395 (397)
                      ..+| . ...++.|+.++++ |+++..+......- |+||+|+++|-+
T Consensus       443 ~~fP-e-~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  443 LSFP-E-LAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             eech-h-hhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence            2333 2 4556666666666 34555543322222 566666666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.48  E-value=1.7e-16  Score=127.48  Aligned_cols=166  Identities=14%  Similarity=0.123  Sum_probs=131.6

Q ss_pred             hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCc
Q 045321          158 ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLM  237 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~  237 (397)
                      +.+ -.+.+.+-|-+++|+++.+|+.|..+++|+.|++++|+|+++|.+++.+++|+.|++.-+.+..+|.++|.++.|+
T Consensus        27 ~gL-f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   27 PGL-FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             ccc-cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            444 4567778889999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             EEEecCCCC--CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEE
Q 045321          238 HLNFGSITL--PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHL  315 (397)
Q Consensus       238 ~L~l~~~~~--~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L  315 (397)
                      .|++. .+.  ...+|..+..|+.|+.++++++-.    +.+|..++++++|+.|.++. ..|-+|+=.++. +..|++|
T Consensus       106 vldlt-ynnl~e~~lpgnff~m~tlralyl~dndf----e~lp~dvg~lt~lqil~lrd-ndll~lpkeig~-lt~lrel  178 (264)
T KOG0617|consen  106 VLDLT-YNNLNENSLPGNFFYMTTLRALYLGDNDF----EILPPDVGKLTNLQILSLRD-NDLLSLPKEIGD-LTRLREL  178 (264)
T ss_pred             hhhcc-ccccccccCCcchhHHHHHHHHHhcCCCc----ccCChhhhhhcceeEEeecc-CchhhCcHHHHH-HHHHHHH
Confidence            99998 553  557888888999999999988744    66788888888888887776 333333324445 6677777


Q ss_pred             EEecccCCCCCcccccc
Q 045321          316 SLSNTELMQDPMPIMEK  332 (397)
Q Consensus       316 ~L~~~~l~~~~~~~l~~  332 (397)
                      .+.+|.+ .-.++.+++
T Consensus       179 hiqgnrl-~vlppel~~  194 (264)
T KOG0617|consen  179 HIQGNRL-TVLPPELAN  194 (264)
T ss_pred             hccccee-eecChhhhh
Confidence            7777765 233344443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.45  E-value=2.2e-13  Score=138.30  Aligned_cols=95  Identities=19%  Similarity=0.183  Sum_probs=45.0

Q ss_pred             eeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCC
Q 045321          166 YLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSIT  245 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~  245 (397)
                      .|+.|++++|.++.+|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|.+..+|..+.  .+|+.|+++ ++
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls-~N  272 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLF-HN  272 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECc-CC
Confidence            34555555555555544332  245555555555555554332  245555555554445554432  245555555 44


Q ss_pred             CCCCCCccccCCCCCcEEEcCCCe
Q 045321          246 LPAPPKNYSSSLKNLIFISALNPN  269 (397)
Q Consensus       246 ~~~~~p~~i~~l~~L~~l~l~~~~  269 (397)
                      .+..+|..+.  ++|+.|++++|+
T Consensus       273 ~L~~LP~~l~--~sL~~L~Ls~N~  294 (754)
T PRK15370        273 KISCLPENLP--EELRYLSVYDNS  294 (754)
T ss_pred             ccCccccccC--CCCcEEECCCCc
Confidence            4444444332  245555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.44  E-value=1.4e-13  Score=139.75  Aligned_cols=179  Identities=17%  Similarity=0.215  Sum_probs=101.0

Q ss_pred             CCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcE
Q 045321          137 MYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQT  215 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~  215 (397)
                      ++++.|.+.++...     .+ ..+   .++|++|++++|.++.+|..+.  .+|+.|++++|.+.++|..+.  .+|++
T Consensus       199 ~~L~~L~Ls~N~Lt-----sLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~  266 (754)
T PRK15370        199 EQITTLILDNNELK-----SLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQS  266 (754)
T ss_pred             cCCcEEEecCCCCC-----cCChhh---ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCE
Confidence            46777777777654     34 222   2467777777777777776543  367777777777777776654  46777


Q ss_pred             EecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC
Q 045321          216 LEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE  295 (397)
Q Consensus       216 L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~  295 (397)
                      |++++|++..+|..+.  ++|+.|+++ +|....+|..+.  ++|+.+++++|.+    ..++..+  .++|+.|++++|
T Consensus       267 L~Ls~N~L~~LP~~l~--~sL~~L~Ls-~N~Lt~LP~~lp--~sL~~L~Ls~N~L----t~LP~~l--~~sL~~L~Ls~N  335 (754)
T PRK15370        267 LDLFHNKISCLPENLP--EELRYLSVY-DNSIRTLPAHLP--SGITHLNVQSNSL----TALPETL--PPGLKTLEAGEN  335 (754)
T ss_pred             EECcCCccCccccccC--CCCcEEECC-CCccccCcccch--hhHHHHHhcCCcc----ccCCccc--cccceeccccCC
Confidence            7777777777776543  467777777 666666665443  3455566666544    2233222  245666665553


Q ss_pred             CCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321          296 SKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS  345 (397)
Q Consensus       296 ~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~  345 (397)
                       .++.++-   .++++|+.|++++|.+.. .+..+  .++|+.|+|++|.
T Consensus       336 -~Lt~LP~---~l~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~  378 (754)
T PRK15370        336 -ALTSLPA---SLPPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNA  378 (754)
T ss_pred             -ccccCCh---hhcCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCc
Confidence             2333211   113455555555555432 11112  2455555554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.42  E-value=9.8e-13  Score=133.08  Aligned_cols=219  Identities=17%  Similarity=0.082  Sum_probs=105.7

Q ss_pred             CeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEe
Q 045321          138 YLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLE  217 (397)
Q Consensus       138 ~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~  217 (397)
                      +|+.|.+.++...     .++.   ..+.|++|++++|.++.+|..   ..+|+.|++++|.+..+|..   ..+|+.|+
T Consensus       223 ~L~~L~L~~N~Lt-----~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~  288 (788)
T PRK15387        223 HITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLW  288 (788)
T ss_pred             CCCEEEccCCcCC-----CCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEE
Confidence            5566665555443     2221   235566666666666655532   23555555555555555432   23455555


Q ss_pred             cCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC--
Q 045321          218 MPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE--  295 (397)
Q Consensus       218 l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~--  295 (397)
                      +++|++..+|..   +++|+.|+++ ++....+|....   +|+.|.+++|.+    ..+|.   ...+|+.|+++++  
T Consensus       289 Ls~N~Lt~LP~~---p~~L~~LdLS-~N~L~~Lp~lp~---~L~~L~Ls~N~L----~~LP~---lp~~Lq~LdLS~N~L  354 (788)
T PRK15387        289 IFGNQLTSLPVL---PPGLQELSVS-DNQLASLPALPS---ELCKLWAYNNQL----TSLPT---LPSGLQELSVSDNQL  354 (788)
T ss_pred             CcCCcccccccc---ccccceeECC-CCccccCCCCcc---cccccccccCcc----ccccc---cccccceEecCCCcc
Confidence            555555555542   3456666665 555444443221   233333444432    11111   0124555555542  


Q ss_pred             -------CCeeEEEe------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCC
Q 045321          296 -------SKLSRVVL------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKL  362 (397)
Q Consensus       296 -------~~L~~L~l------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L  362 (397)
                             ++|+.|.+      .+...+.+|+.|++++|.+.. .+ ..  .++|+.|++++|.+..  ++.    .+.+|
T Consensus       355 s~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP-~l--~s~L~~LdLS~N~Lss--IP~----l~~~L  424 (788)
T PRK15387        355 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP-VL--PSELKELMVSGNRLTS--LPM----LPSGL  424 (788)
T ss_pred             CCCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CC-Cc--ccCCCEEEccCCcCCC--CCc----chhhh
Confidence                   01222211      111113456667776666532 11 11  2466667776555432  111    12356


Q ss_pred             CEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          363 TVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       363 ~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      +.|+++++ .+..+|.....+++|+.|++++++
T Consensus       425 ~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        425 LSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence            66677663 466666555667777777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.40  E-value=1.1e-12  Score=135.31  Aligned_cols=255  Identities=22%  Similarity=0.171  Sum_probs=173.7

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCC--cccccc-cccCCCCCceEecCCCC-CcccCccccC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAV--LDQFPL-GLENLILLKHLKLNIPS-LKCLPSLLCT  209 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~--i~~lp~-~~~~l~~L~~L~l~~~~-i~~lp~~~~~  209 (397)
                      ......|.+.+.++...     .++.- ...+.|++|-+.++.  +..++. .+..++.||.||+++|. +.++|++|+.
T Consensus       520 ~~~~~~rr~s~~~~~~~-----~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~  593 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIE-----HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE  593 (889)
T ss_pred             cchhheeEEEEeccchh-----hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence            56677888888777664     23222 455579999888886  555554 47789999999999865 8899999999


Q ss_pred             CCCCcEEecCCcccccchhhhhccccCcEEEecCCCCC-CCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321          210 ILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE  288 (397)
Q Consensus       210 l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~  288 (397)
                      |-+|++|+++++.+..+|.++++|++|.+|++. .+.. ..+|.....|++|+++.+....... .......+..+++|+
T Consensus       594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~-~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~Le~L~  671 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE-VTGRLESIPGILLELQSLRVLRLPRSALSN-DKLLLKELENLEHLE  671 (889)
T ss_pred             hhhhhcccccCCCccccchHHHHHHhhheeccc-cccccccccchhhhcccccEEEeecccccc-chhhHHhhhcccchh
Confidence            999999999999999999999999999999998 7653 3344445559999998776542111 234445566777777


Q ss_pred             EEEeecCC-------------------------CeeEEEeccCCCCCCceEEEEecccCCCCCc----------------
Q 045321          289 CLKLVNES-------------------------KLSRVVLSKYQFPLSLSHLSLSNTELMQDPM----------------  327 (397)
Q Consensus       289 ~L~l~~~~-------------------------~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~----------------  327 (397)
                      .+++....                         ..+.+...... +++|+.|.+.+|.+.+...                
T Consensus       672 ~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~-l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~  750 (889)
T KOG4658|consen  672 NLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS-LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS  750 (889)
T ss_pred             hheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc-ccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence            77665421                         11222213444 7888888888887532111                


Q ss_pred             -------------cccccCcCCceEEEecccccCceeEEe--------CCCCCCCCCEE-EEecCCCcCcEEECCCcccc
Q 045321          328 -------------PIMEKLPRLQVLKLKQNSYLGRKLACV--------GSSSFPKLTVL-HLKSMYWQDEWTMGAGAMPK  385 (397)
Q Consensus       328 -------------~~l~~l~~L~~L~L~~~~~~~~~~~~~--------~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~p~  385 (397)
                                   .+..-.|+|+.|.+..+....+.++..        ....|.+++.+ .+.+.+.++++-...-.+|+
T Consensus       751 ~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~  830 (889)
T KOG4658|consen  751 KVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK  830 (889)
T ss_pred             HHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc
Confidence                         111124788888886554333222111        02345566666 57777777777666667888


Q ss_pred             ccccccccccCC
Q 045321          386 LESLIVNPCAYL  397 (397)
Q Consensus       386 L~~L~i~~C~~L  397 (397)
                      |+.+.+..||+|
T Consensus       831 l~~~~ve~~p~l  842 (889)
T KOG4658|consen  831 LEELIVEECPKL  842 (889)
T ss_pred             hhheehhcCccc
Confidence            999999999885

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.36  E-value=8.3e-14  Score=129.98  Aligned_cols=61  Identities=25%  Similarity=0.181  Sum_probs=27.4

Q ss_pred             CCCceEEEEecccCCCCCcccccc-----CcCCceEEEecccccCce---eEEeCCCCCCCCCEEEEecC
Q 045321          309 PLSLSHLSLSNTELMQDPMPIMEK-----LPRLQVLKLKQNSYLGRK---LACVGSSSFPKLTVLHLKSM  370 (397)
Q Consensus       309 l~~L~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~L~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~  370 (397)
                      +++|++|++++|.+....+..+..     .+.|++|+++++.+....   +... ...+++|+.++++++
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N  288 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGN  288 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCC
Confidence            555666666666543322222211     256666666554433111   1111 233456666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.30  E-value=1.5e-13  Score=136.08  Aligned_cols=191  Identities=19%  Similarity=0.172  Sum_probs=124.2

Q ss_pred             CeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321          138 YLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL  216 (397)
Q Consensus       138 ~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L  216 (397)
                      +|++|.++++...     .+ ..+ ..+.+|+.|+++.|.|..+|.+++++.+|++++|.+|.+..+|.++..+++|+.|
T Consensus        46 ~L~~l~lsnn~~~-----~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L  119 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-----SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL  119 (1081)
T ss_pred             eeEEeeccccccc-----cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence            3888888877665     44 344 6777888888888888888888888888888888888888888888888888888


Q ss_pred             ecCCcccccchhhhhccccCcEEEecCCC--------------------CCCCCCccccCCCCCcEEEcCCCeeeEEecc
Q 045321          217 EMPSSYVDHSLEDIWMMQKLMHLNFGSIT--------------------LPAPPKNYSSSLKNLIFISALNPNLSCYHSG  276 (397)
Q Consensus       217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~--------------------~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~  276 (397)
                      ++++|.....|..+..+..+..+.++ ++                    ....++.++..++.  .+++.+|++.     
T Consensus       120 dlS~N~f~~~Pl~i~~lt~~~~~~~s-~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-----  191 (1081)
T KOG0618|consen  120 DLSFNHFGPIPLVIEVLTAEEELAAS-NNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-----  191 (1081)
T ss_pred             ccchhccCCCchhHHhhhHHHHHhhh-cchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-----
Confidence            88888777777655555544444444 32                    12233344444444  3555555331     


Q ss_pred             HHhhhcCCCCC----------cEEEeecCCCeeEEEe---------ccCCCCCCceEEEEecccCCCCCccccccCcCCc
Q 045321          277 VSNSLLGLHKL----------ECLKLVNESKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQ  337 (397)
Q Consensus       277 ~~~~l~~l~~L----------~~L~l~~~~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~  337 (397)
                       ...+..+++|          ..+.+.+ ++++.|..         .... +.+|++++++.+++.. .+.+++.+++|+
T Consensus       192 -~~dls~~~~l~~l~c~rn~ls~l~~~g-~~l~~L~a~~n~l~~~~~~p~-p~nl~~~dis~n~l~~-lp~wi~~~~nle  267 (1081)
T KOG0618|consen  192 -VLDLSNLANLEVLHCERNQLSELEISG-PSLTALYADHNPLTTLDVHPV-PLNLQYLDISHNNLSN-LPEWIGACANLE  267 (1081)
T ss_pred             -hhhhhhccchhhhhhhhcccceEEecC-cchheeeeccCcceeeccccc-cccceeeecchhhhhc-chHHHHhcccce
Confidence             1223333333          3344443 55555544         1122 7789999999998744 448888999999


Q ss_pred             eEEEecccc
Q 045321          338 VLKLKQNSY  346 (397)
Q Consensus       338 ~L~L~~~~~  346 (397)
                      .+....|.+
T Consensus       268 ~l~~n~N~l  276 (1081)
T KOG0618|consen  268 ALNANHNRL  276 (1081)
T ss_pred             EecccchhH
Confidence            999865554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.29  E-value=4e-11  Score=121.55  Aligned_cols=218  Identities=17%  Similarity=0.096  Sum_probs=115.1

Q ss_pred             CCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEe
Q 045321          115 ANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLK  194 (397)
Q Consensus       115 ~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~  194 (397)
                      ..++.|.+..+..... + ..+++|++|.+.++...     .++..   .+.|+.|++++|.++.+|...   .+|+.|+
T Consensus       222 ~~L~~L~L~~N~Lt~L-P-~lp~~Lk~LdLs~N~Lt-----sLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~  288 (788)
T PRK15387        222 AHITTLVIPDNNLTSL-P-ALPPELRTLEVSGNQLT-----SLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLW  288 (788)
T ss_pred             cCCCEEEccCCcCCCC-C-CCCCCCcEEEecCCccC-----cccCc---ccccceeeccCCchhhhhhch---hhcCEEE
Confidence            3567777763332221 1 23577888888887664     22221   245556666666555544321   3344455


Q ss_pred             cCCCCCcccCccccCCCCCcEEecCCcccccchhhhh-----------------ccccCcEEEecCCCCCCCCCccccCC
Q 045321          195 LNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIW-----------------MMQKLMHLNFGSITLPAPPKNYSSSL  257 (397)
Q Consensus       195 l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~-----------------~L~~L~~L~l~~~~~~~~~p~~i~~l  257 (397)
                      +++|.++.+|..   +++|+.|++++|.+..+|....                 -..+|+.|+++ ++.+..+|...   
T Consensus       289 Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS-~N~Ls~LP~lp---  361 (788)
T PRK15387        289 IFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVS-DNQLASLPTLP---  361 (788)
T ss_pred             CcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecC-CCccCCCCCCC---
Confidence            555555555432   2345555555554444433111                 01256666666 55555555432   


Q ss_pred             CCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCc
Q 045321          258 KNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQ  337 (397)
Q Consensus       258 ~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~  337 (397)
                      .+|+.+++++|.+    ..++..   ..+|+.|+++++ .+..++    ..+++|+.|++++|.+.. .+ .+  ..+|+
T Consensus       362 ~~L~~L~Ls~N~L----~~LP~l---~~~L~~LdLs~N-~Lt~LP----~l~s~L~~LdLS~N~Lss-IP-~l--~~~L~  425 (788)
T PRK15387        362 SELYKLWAYNNRL----TSLPAL---PSGLKELIVSGN-RLTSLP----VLPSELKELMVSGNRLTS-LP-ML--PSGLL  425 (788)
T ss_pred             cccceehhhcccc----ccCccc---ccccceEEecCC-cccCCC----CcccCCCEEEccCCcCCC-CC-cc--hhhhh
Confidence            2344445555543    223321   245677777663 333322    115678888888888643 22 21  34677


Q ss_pred             eEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          338 VLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       338 ~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      .|++++|.+.  .++.. ...+++|+.|++++++
T Consensus       426 ~L~Ls~NqLt--~LP~s-l~~L~~L~~LdLs~N~  456 (788)
T PRK15387        426 SLSVYRNQLT--RLPES-LIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhccCccc--ccChH-HhhccCCCeEECCCCC
Confidence            7888766654  34444 5677888888888764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.29  E-value=2.5e-13  Score=126.76  Aligned_cols=234  Identities=18%  Similarity=0.124  Sum_probs=145.7

Q ss_pred             hHHhcCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCcc-------cCccccCCCCCcEEecCCcccc-
Q 045321          158 ENFCEKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLKC-------LPSLLCTILNLQTLEMPSSYVD-  224 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~~-------lp~~~~~l~~L~~L~l~~~~l~-  224 (397)
                      ..++..++.|++|+++++.++     .++..+...+.|++++++++.+..       ++..+.++++|+.|++++|.+. 
T Consensus        16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   95 (319)
T cd00116          16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP   95 (319)
T ss_pred             HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence            344456666778888877763     355556666777777777765542       3345666778888888887544 


Q ss_pred             cchhhhhcccc---CcEEEecCCCCCC-----CCCccccCC-CCCcEEEcCCCeeeEE-eccHHhhhcCCCCCcEEEeec
Q 045321          225 HSLEDIWMMQK---LMHLNFGSITLPA-----PPKNYSSSL-KNLIFISALNPNLSCY-HSGVSNSLLGLHKLECLKLVN  294 (397)
Q Consensus       225 ~lp~~~~~L~~---L~~L~l~~~~~~~-----~~p~~i~~l-~~L~~l~l~~~~L~i~-~~~~~~~l~~l~~L~~L~l~~  294 (397)
                      ..+..+..+.+   |++|+++ +|...     .+...+..+ ++|+.+++++|.+.-. ...+...+..+++|+.|++++
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls-~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  174 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN  174 (319)
T ss_pred             hHHHHHHHHhccCcccEEEee-CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence            34455555555   8888887 66433     122345556 7788888887755211 124555667778888888887


Q ss_pred             CCCeeEEEe-----ccCCCCCCceEEEEecccCCCCCc----cccccCcCCceEEEecccccCceeEEe--C-CCCCCCC
Q 045321          295 ESKLSRVVL-----SKYQFPLSLSHLSLSNTELMQDPM----PIMEKLPRLQVLKLKQNSYLGRKLACV--G-SSSFPKL  362 (397)
Q Consensus       295 ~~~L~~L~l-----~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~~~~~~--~-~~~~~~L  362 (397)
                      +. +..-.+     .+.. .++|++|++++|.+.....    ..+..+++|++|++++|...+..+...  + ....+.|
T Consensus       175 n~-l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L  252 (319)
T cd00116         175 NG-IGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL  252 (319)
T ss_pred             CC-CchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence            42 221000     1233 5699999999998754332    345678999999998877654322111  0 1134799


Q ss_pred             CEEEEecCCCcC-----cEEECCCcccccccccccccc
Q 045321          363 TVLHLKSMYWQD-----EWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       363 ~~L~l~~~~~l~-----~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      +.|++.+|. +.     .+......+++|+++++++++
T Consensus       253 ~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         253 LTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             eEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            999999974 33     111223345788888887753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.24  E-value=2.5e-13  Score=122.77  Aligned_cols=127  Identities=13%  Similarity=0.061  Sum_probs=101.6

Q ss_pred             CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCC-CCCcccCc-cccCCC
Q 045321          136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNI-PSLKCLPS-LLCTIL  211 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~  211 (397)
                      ......+.+..+.+.     .+ +..|+.++.||.|||++|.|+.+ |+.+.++..|..|-+-+ |+|+.+|. .+++|.
T Consensus        66 P~~tveirLdqN~I~-----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   66 PPETVEIRLDQNQIS-----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             CCcceEEEeccCCcc-----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            344566778888775     67 77779999999999999999954 88899999988887766 88999996 478899


Q ss_pred             CCcEEecCCcccccchh-hhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCC
Q 045321          212 NLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNP  268 (397)
Q Consensus       212 ~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~  268 (397)
                      .||.|.+.-|.+.-++. .+..|++|..|.+. .+....++. .+..+..++++.+..+
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLsly-Dn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLY-DNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhccc-chhhhhhccccccchhccchHhhhcC
Confidence            99999999887777664 58899999999998 777777776 5777888888666543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.22  E-value=1.3e-12  Score=118.17  Aligned_cols=124  Identities=14%  Similarity=0.104  Sum_probs=73.6

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCC-CCcccccc-cccCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGY-AVLDQFPL-GLENLI  188 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~-~~i~~lp~-~~~~l~  188 (397)
                      +...-.+.+..+....++++  ..+++||.|.++++.+.     .| ++-|..++.|..|-+.+ |.|+.+|+ .+++|.
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-----~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-----FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchh-----hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            44455555554445554544  66666777777666654     44 44456666665555554 55666663 456666


Q ss_pred             CCceEecCCCCCcccC-ccccCCCCCcEEecCCcccccchh-hhhccccCcEEEec
Q 045321          189 LLKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFG  242 (397)
Q Consensus       189 ~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~  242 (397)
                      .|+-|.+.-+.+..++ ..+..+++|..|.+..+.++.++. .+..+.+++++.+.
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence            6666666666665443 345566666666666666666665 36666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=2.5e-10  Score=109.83  Aligned_cols=179  Identities=23%  Similarity=0.234  Sum_probs=140.3

Q ss_pred             hHHhcCCCeeEEEEcCCCCcccccccccCCC-CCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccC
Q 045321          158 ENFCEKFKYLRLLNLGYAVLDQFPLGLENLI-LLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKL  236 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L  236 (397)
                      ..+ ..++.++.|++.++.+.++|+..+.+. +|+.|+++++.+..+|..++.+++|+.|++.+|.+.++|...+.+++|
T Consensus       110 ~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L  188 (394)
T COG4886         110 SEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL  188 (394)
T ss_pred             hhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence            444 566789999999999999988888885 999999999999999888999999999999999999999987789999


Q ss_pred             cEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEE
Q 045321          237 MHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLS  316 (397)
Q Consensus       237 ~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~  316 (397)
                      +.|+++ ++....+|..++.+..|+++.++++..    ...+..+..+..+..+.+.. ..+..+.-.++. +++++.|+
T Consensus       189 ~~L~ls-~N~i~~l~~~~~~~~~L~~l~~~~N~~----~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~-l~~l~~L~  261 (394)
T COG4886         189 NNLDLS-GNKISDLPPEIELLSALEELDLSNNSI----IELLSSLSNLKNLSGLELSN-NKLEDLPESIGN-LSNLETLD  261 (394)
T ss_pred             hheecc-CCccccCchhhhhhhhhhhhhhcCCcc----eecchhhhhcccccccccCC-ceeeeccchhcc-ccccceec
Confidence            999999 888888888887888899988887732    34455666677777666543 222222225666 88899999


Q ss_pred             EecccCCCCCccccccCcCCceEEEecccc
Q 045321          317 LSNTELMQDPMPIMEKLPRLQVLKLKQNSY  346 (397)
Q Consensus       317 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~  346 (397)
                      +++|.+..  .+.++.+.+++.|+++++..
T Consensus       262 ~s~n~i~~--i~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         262 LSNNQISS--ISSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cccccccc--cccccccCccCEEeccCccc
Confidence            99998643  33388889999999976543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.02  E-value=5.8e-12  Score=118.90  Aligned_cols=126  Identities=22%  Similarity=0.242  Sum_probs=61.8

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF  241 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l  241 (397)
                      .++..|.+|+++.|+++.+|..++.|+ |+.|-+++|+++.+|+.++.+..|..||.+.|.+..+|..++.+.+|+.|.+
T Consensus       118 ~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence            444455555555555555554444432 4455555555555555555445555555555555555555555555555554


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeec
Q 045321          242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVN  294 (397)
Q Consensus       242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~  294 (397)
                      . .+....+|...+.| .|..|++++|++    ..+|..+.+|++|+.|.+.+
T Consensus       197 r-Rn~l~~lp~El~~L-pLi~lDfScNki----s~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  197 R-RNHLEDLPEELCSL-PLIRLDFSCNKI----SYLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             h-hhhhhhCCHHHhCC-ceeeeecccCce----eecchhhhhhhhheeeeecc
Confidence            4 44444444444422 244445554443    33445555555555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.91  E-value=7.7e-11  Score=111.49  Aligned_cols=171  Identities=23%  Similarity=0.246  Sum_probs=140.9

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF  241 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l  241 (397)
                      ..+-.|..+.++.|.+..+|..++++..|+||+++.|++..+|..++.|+ |+.|.+++|+++.+|..++-+..|.+|+.
T Consensus        95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~  173 (722)
T KOG0532|consen   95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV  173 (722)
T ss_pred             HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhh
Confidence            66677888889999999999999999999999999999999999999886 99999999999999999998889999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321          242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE  321 (397)
Q Consensus       242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~  321 (397)
                      + .|.+..+|..++.+.+|+.+++..|.+    ..+|+.+..+ .|..|+++. .++..+++.|.. +..|++|-|.+|.
T Consensus       174 s-~nei~slpsql~~l~slr~l~vrRn~l----~~lp~El~~L-pLi~lDfSc-Nkis~iPv~fr~-m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  174 S-KNEIQSLPSQLGYLTSLRDLNVRRNHL----EDLPEELCSL-PLIRLDFSC-NKISYLPVDFRK-MRHLQVLQLENNP  245 (722)
T ss_pred             h-hhhhhhchHHhhhHHHHHHHHHhhhhh----hhCCHHHhCC-ceeeeeccc-Cceeecchhhhh-hhhheeeeeccCC
Confidence            9 888889999999999999998888765    6677777744 477788874 788888888888 9999999999998


Q ss_pred             CCCCCccccc---cCcCCceEEEe
Q 045321          322 LMQDPMPIME---KLPRLQVLKLK  342 (397)
Q Consensus       322 l~~~~~~~l~---~l~~L~~L~L~  342 (397)
                      + +.++..+.   ...=.++|+..
T Consensus       246 L-qSPPAqIC~kGkVHIFKyL~~q  268 (722)
T KOG0532|consen  246 L-QSPPAQICEKGKVHIFKYLSTQ  268 (722)
T ss_pred             C-CCChHHHHhccceeeeeeecch
Confidence            7 44544443   22333555553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=1.4e-09  Score=104.57  Aligned_cols=178  Identities=26%  Similarity=0.284  Sum_probs=145.5

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCC-eeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFK-YLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~-~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~  212 (397)
                      ...+.+..+.+.++...     .++.....++ +|+.|+++++.+..+|..++.+++|+.|++++|++.++|...+.+.+
T Consensus       113 ~~~~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~  187 (394)
T COG4886         113 LELTNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN  187 (394)
T ss_pred             hcccceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhh
Confidence            55678899988888775     5544425564 89999999999999988899999999999999999999988889999


Q ss_pred             CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEe
Q 045321          213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKL  292 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l  292 (397)
                      |+.|+++++.+..+|..+..+..|..+.++ ++.....+..+.+++++..+.+.++.+    ..++..++.++.++.|++
T Consensus       188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~-~N~~~~~~~~~~~~~~l~~l~l~~n~~----~~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         188 LNNLDLSGNKISDLPPEIELLSALEELDLS-NNSIIELLSSLSNLKNLSGLELSNNKL----EDLPESIGNLSNLETLDL  262 (394)
T ss_pred             hhheeccCCccccCchhhhhhhhhhhhhhc-CCcceecchhhhhcccccccccCCcee----eeccchhccccccceecc
Confidence            999999999999999988778889999998 776677788888999988888777754    444678888889999999


Q ss_pred             ecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321          293 VNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ  324 (397)
Q Consensus       293 ~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~  324 (397)
                      ++ ..+..++- ++. +.+++.|+++++.+..
T Consensus       263 s~-n~i~~i~~-~~~-~~~l~~L~~s~n~~~~  291 (394)
T COG4886         263 SN-NQISSISS-LGS-LTNLRELDLSGNSLSN  291 (394)
T ss_pred             cc-cccccccc-ccc-cCccCEEeccCccccc
Confidence            87 34444432 455 8899999999987643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=1.1e-09  Score=91.60  Aligned_cols=102  Identities=23%  Similarity=0.147  Sum_probs=22.9

Q ss_pred             CCeeEEEEcCCCCccccccccc-CCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhh-hccccCcEEEe
Q 045321          164 FKYLRLLNLGYAVLDQFPLGLE-NLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDI-WMMQKLMHLNF  241 (397)
Q Consensus       164 l~~Lr~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~-~~L~~L~~L~l  241 (397)
                      ...+|+|+|.++.|+.+ +.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.+..++..+ ..+++|++|++
T Consensus        18 ~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            33445555555555433 2233 3445555555555555542 3445555555555555555554333 23555555555


Q ss_pred             cCCCCCCCCC--ccccCCCCCcEEEcCCC
Q 045321          242 GSITLPAPPK--NYSSSLKNLIFISALNP  268 (397)
Q Consensus       242 ~~~~~~~~~p--~~i~~l~~L~~l~l~~~  268 (397)
                      + ++.+..+-  ..++.+++|+.+++.+|
T Consensus        96 ~-~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   96 S-NNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             T-TS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             c-CCcCCChHHhHHHHcCCCcceeeccCC
Confidence            5 44322221  23344555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.81  E-value=4.7e-09  Score=87.74  Aligned_cols=124  Identities=21%  Similarity=0.233  Sum_probs=39.1

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccc-cCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLL-CTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~  212 (397)
                      ..+.++|.|.+.++.+.     .+..+-..+.+|++|++++|.|+.++ .+..+++|+.|++++|.|+.+++.+ ..+++
T Consensus        16 ~n~~~~~~L~L~~n~I~-----~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-----TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             ccccccccccccccccc-----cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            33445666666666654     23333124566777777777776653 4566777777777777777665544 34677


Q ss_pred             CcEEecCCcccccch--hhhhccccCcEEEecCCCCCCCCCc----cccCCCCCcEEE
Q 045321          213 LQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAPPKN----YSSSLKNLIFIS  264 (397)
Q Consensus       213 L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~l~  264 (397)
                      |++|++++|++.++-  ..+..+++|+.|++. +++....+.    -+..+++|+.++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~-~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLE-GNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-T-T-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeecc-CCcccchhhHHHHHHHHcChhheeC
Confidence            777777777544432  235566777777776 655443332    245566666644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1.5e-09  Score=99.87  Aligned_cols=201  Identities=21%  Similarity=0.173  Sum_probs=106.5

Q ss_pred             CCCCCceEecCCCCCcccC--ccccCCCCCcEEecCCc---ccccchhhhhccccCcEEEecCCCCCCCCCc--cccCCC
Q 045321          186 NLILLKHLKLNIPSLKCLP--SLLCTILNLQTLEMPSS---YVDHSLEDIWMMQKLMHLNFGSITLPAPPKN--YSSSLK  258 (397)
Q Consensus       186 ~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~---~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~--~i~~l~  258 (397)
                      ++++||...+.++.+...+  +....+++.+.|||++|   +...+-.....|++|+.|+++ .+.....-.  .-..+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls-~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS-SNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccc-cccccCCccccchhhhh
Confidence            4455555555555544443  24445556666666655   333333445556666666665 432211111  112355


Q ss_pred             CCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCC-ccccccCcCCc
Q 045321          259 NLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDP-MPIMEKLPRLQ  337 (397)
Q Consensus       259 ~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~  337 (397)
                      .|+.+.++.|.+.  ...+-..+..+++|+.|.+.++..+-.-.....- +..|+.|+|++|++...+ ....+.+|.|+
T Consensus       198 ~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i-~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  198 HLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKI-LQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhh-hhHHhhccccCCcccccccccccccccchh
Confidence            6666666666442  2333344456677777777664211111001222 777888888888754433 35567788888


Q ss_pred             eEEEecccccCceeEEeC----CCCCCCCCEEEEecCCCcCcEEE--CCCcccccccccc
Q 045321          338 VLKLKQNSYLGRKLACVG----SSSFPKLTVLHLKSMYWQDEWTM--GAGAMPKLESLIV  391 (397)
Q Consensus       338 ~L~L~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~~~~--~~~~~p~L~~L~i  391 (397)
                      .|+++.++......+..+    ...||+|+.|.+..+ ++.+|+.  ....+++|+.|.+
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence            888876665433222110    246788888888864 3555542  2234566666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=8.8e-10  Score=96.79  Aligned_cols=126  Identities=16%  Similarity=0.118  Sum_probs=78.3

Q ss_pred             CCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCC
Q 045321          188 ILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALN  267 (397)
Q Consensus       188 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~  267 (397)
                      ..|+.+|+++|.|+++-+++.-++.++.|++++|.+..+-. +..|++|++|+++ ++...++-.+-.++-+.+++.+.+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS-~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLS-GNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecc-cchhHhhhhhHhhhcCEeeeehhh
Confidence            34667777777777777777777777777777776666554 6667777777777 665555544444556666666665


Q ss_pred             CeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe--ccCCCCCCceEEEEecccC
Q 045321          268 PNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL--SKYQFPLSLSHLSLSNTEL  322 (397)
Q Consensus       268 ~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l--~~~~~l~~L~~L~L~~~~l  322 (397)
                      |.+     .-.+.++++-+|..|++++ .+++.++-  .+++ +|.|+.+.|.+|++
T Consensus       362 N~i-----E~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~-LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  362 NKI-----ETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGN-LPCLETLRLTGNPL  411 (490)
T ss_pred             hhH-----hhhhhhHhhhhheeccccc-cchhhHHHhccccc-ccHHHHHhhcCCCc
Confidence            522     2223445555666677766 23333321  4666 77788887777765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.3e-10  Score=100.26  Aligned_cols=66  Identities=24%  Similarity=0.132  Sum_probs=46.2

Q ss_pred             cCCCCCCceEEEEeccc-CCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCC
Q 045321          305 KYQFPLSLSHLSLSNTE-LMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYW  372 (397)
Q Consensus       305 ~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  372 (397)
                      ... +|+|.+|||++|. ++......+.+++.|++|.++.+.......... .++.|+|.+|++.+|-.
T Consensus       309 ~~r-cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  309 VRR-CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHh-CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee-eccCcceEEEEeccccC
Confidence            344 8888888888885 344445667788888888885554444444445 67888888888888743

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.4e-09  Score=98.54  Aligned_cols=39  Identities=18%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             CCCceEEEEecccCCC-CCccccccCcCCceEEEeccccc
Q 045321          309 PLSLSHLSLSNTELMQ-DPMPIMEKLPRLQVLKLKQNSYL  347 (397)
Q Consensus       309 l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~  347 (397)
                      +++|++|++..|++.+ ..+..+..+++|+.|.+..+.+.
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            7888888888887632 23444555777888776555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.68  E-value=2.9e-09  Score=93.59  Aligned_cols=131  Identities=21%  Similarity=0.256  Sum_probs=98.0

Q ss_pred             cCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321          208 CTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL  287 (397)
Q Consensus       208 ~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L  287 (397)
                      ...+.|+++|+++|.++.+-.++.-+++++.|+++ .+.+..+ +.+..+.+|+.+++++|.|    ..+..+=.++-+.
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS-~N~i~~v-~nLa~L~~L~~LDLS~N~L----s~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILS-QNRIRTV-QNLAELPQLQLLDLSGNLL----AECVGWHLKLGNI  354 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEecc-ccceeee-hhhhhcccceEeecccchh----HhhhhhHhhhcCE
Confidence            45677999999999999998888888999999998 7665544 4588889999999999865    3344444556677


Q ss_pred             cEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC-CCccccccCcCCceEEEeccccc
Q 045321          288 ECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ-DPMPIMEKLPRLQVLKLKQNSYL  347 (397)
Q Consensus       288 ~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~  347 (397)
                      +.|.+.+ ..++.|. .++. +-+|..|++++|++.+ +....++++|.|+.+.|.+|...
T Consensus       355 KtL~La~-N~iE~LS-GL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  355 KTLKLAQ-NKIETLS-GLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeeehhh-hhHhhhh-hhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            7777776 2333332 3445 7789999999998744 34567899999999999777653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=6.5e-09  Score=93.21  Aligned_cols=90  Identities=20%  Similarity=0.121  Sum_probs=45.1

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCc----ccccc-------cccCCCCCceEecCCCCCc-
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVL----DQFPL-------GLENLILLKHLKLNIPSLK-  201 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i----~~lp~-------~~~~l~~L~~L~l~~~~i~-  201 (397)
                      ..+..+..+.++++.+..-..+.+...+.+.+.||+-++++-.-    .++|+       .+-..++|++++||.|.+. 
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            56666666777766665433333433336666666666664431    13332       2233445666666655442 


Q ss_pred             c----cCccccCCCCCcEEecCCccc
Q 045321          202 C----LPSLLCTILNLQTLEMPSSYV  223 (397)
Q Consensus       202 ~----lp~~~~~l~~L~~L~l~~~~l  223 (397)
                      .    +-.-+..++.|++|.+.+|.+
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCC
Confidence            1    112234455555555555533

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=3.8e-08  Score=86.55  Aligned_cols=208  Identities=17%  Similarity=0.133  Sum_probs=124.7

Q ss_pred             hHHhcCCCeeEEEEcCCCCcc---cccccccCCCCCceEecCCCCCcccCccc-cCCCCCcEEecCCc--ccccchhhhh
Q 045321          158 ENFCEKFKYLRLLNLGYAVLD---QFPLGLENLILLKHLKLNIPSLKCLPSLL-CTILNLQTLEMPSS--YVDHSLEDIW  231 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~--~l~~lp~~~~  231 (397)
                      ..+=...+.++.+||.+|.|+   ++-.-+.+|++|++|+++.|.+...-.+. ..+.+|++|.+.++  ..+.....+.
T Consensus        64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence            344356778899999999877   44445568899999999987754221222 35678899999888  5555666677


Q ss_pred             ccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCC
Q 045321          232 MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPL  310 (397)
Q Consensus       232 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~  310 (397)
                      .+++++.|+++ .+             +++.++++++..    +...      +.++.|+..+|+-..-+.. .++..+|
T Consensus       144 ~lP~vtelHmS-~N-------------~~rq~n~Dd~c~----e~~s------~~v~tlh~~~c~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  144 DLPKVTELHMS-DN-------------SLRQLNLDDNCI----EDWS------TEVLTLHQLPCLEQLWLNKNKLSRIFP  199 (418)
T ss_pred             cchhhhhhhhc-cc-------------hhhhhccccccc----cccc------hhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence            88888888877 32             233344433211    1110      1223333333321000000 1112288


Q ss_pred             CceEEEEecccCCCCC-ccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECC------Ccc
Q 045321          311 SLSHLSLSNTELMQDP-MPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGA------GAM  383 (397)
Q Consensus       311 ~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~------~~~  383 (397)
                      |+..+.+..|++.... -.....+|.+-.|+|+.+++....-.-. ..+||.|..|.+...|-+..+....      +.+
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            8888888888764322 2335567777788886666655443333 6789999999998877666654332      346


Q ss_pred             ccccccc
Q 045321          384 PKLESLI  390 (397)
Q Consensus       384 p~L~~L~  390 (397)
                      |+++.|+
T Consensus       279 ~~v~vLN  285 (418)
T KOG2982|consen  279 TKVQVLN  285 (418)
T ss_pred             cceEEec
Confidence            6666654

>PLN03150 hypothetical protein; Provisional

Probab=98.55  E-value=2.2e-07  Score=94.21  Aligned_cols=102  Identities=14%  Similarity=0.205  Sum_probs=60.3

Q ss_pred             CceEecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhhhhccccCcEEEecCCCCC-CCCCccccCCCCCcEEEcC
Q 045321          190 LKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISAL  266 (397)
Q Consensus       190 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~l~l~  266 (397)
                      ++.|+|+++.+. .+|.+++++++|+.|++++|.+. .+|..++.+++|+.|+++ ++.. ..+|..++++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs-~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS-YNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC-CCCCCCCCchHHhcCCCCCEEECc
Confidence            555666666654 56666666666666666666443 566666666666666666 5543 3456666666666666666


Q ss_pred             CCeeeEEeccHHhhhcCC-CCCcEEEeecC
Q 045321          267 NPNLSCYHSGVSNSLLGL-HKLECLKLVNE  295 (397)
Q Consensus       267 ~~~L~i~~~~~~~~l~~l-~~L~~L~l~~~  295 (397)
                      +|.+   ...+|..++.+ .++..+++.++
T Consensus       499 ~N~l---~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        499 GNSL---SGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCcc---cccCChHHhhccccCceEEecCC
Confidence            6655   34555555442 34455555553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.50  E-value=9.3e-08  Score=65.62  Aligned_cols=56  Identities=27%  Similarity=0.422  Sum_probs=28.9

Q ss_pred             eeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCc
Q 045321          166 YLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSS  221 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~  221 (397)
                      +|++|++++|.++.+| ..+.++++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            4555555555555554 244455555555555555554442 3455555555555544

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=2.8e-07  Score=63.23  Aligned_cols=57  Identities=19%  Similarity=0.250  Sum_probs=48.1

Q ss_pred             CCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCC
Q 045321          188 ILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT  245 (397)
Q Consensus       188 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~  245 (397)
                      ++|++|++++|++.++|+ .+..+++|++|++++|.+..+|+ .+..+++|++|+++ +|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~-~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS-NN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET-SS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc-CC
Confidence            468899999999998884 66789999999999888888876 47889999999988 65

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.32  E-value=1.8e-07  Score=84.06  Aligned_cols=62  Identities=26%  Similarity=0.260  Sum_probs=37.9

Q ss_pred             CCCceEEEEecccCCCCCccccc-----cCcCCceEEEecccccCce---eEEeCCCCCCCCCEEEEecCC
Q 045321          309 PLSLSHLSLSNTELMQDPMPIME-----KLPRLQVLKLKQNSYLGRK---LACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       309 l~~L~~L~L~~~~l~~~~~~~l~-----~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      +++|+.|++++|.+.......+.     ..|+|+.|.+.+|.+..+.   +... ....|.|+.|.+++|.
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGNR  309 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCccc
Confidence            67788888888876554433322     3678888888666543321   1111 3346788888888764

>PLN03150 hypothetical protein; Provisional

Probab=98.31  E-value=2.5e-06  Score=86.63  Aligned_cols=102  Identities=17%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             eeEEEEcCCCCcc-cccccccCCCCCceEecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhhhhccccCcEEEec
Q 045321          166 YLRLLNLGYAVLD-QFPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLEDIWMMQKLMHLNFG  242 (397)
Q Consensus       166 ~Lr~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~  242 (397)
                      .++.|+|+++.+. .+|..++++.+|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4888999999987 78899999999999999999986 88989999999999999999665 688889999999999999


Q ss_pred             CCCC-CCCCCccccCC-CCCcEEEcCCC
Q 045321          243 SITL-PAPPKNYSSSL-KNLIFISALNP  268 (397)
Q Consensus       243 ~~~~-~~~~p~~i~~l-~~L~~l~l~~~  268 (397)
                       ++. ...+|..++.+ .++..+++.+|
T Consensus       499 -~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        499 -GNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             -CCcccccCChHHhhccccCceEEecCC
Confidence             765 44788877764 45667777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=1.3e-06  Score=55.13  Aligned_cols=38  Identities=26%  Similarity=0.383  Sum_probs=17.3

Q ss_pred             CCceEecCCCCCcccCccccCCCCCcEEecCCcccccc
Q 045321          189 LLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS  226 (397)
Q Consensus       189 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l  226 (397)
                      +|++|++++|+|+.+|+.+++|++|++|++++|.+..+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            34444444444444444444555555555554444443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.20  E-value=1.3e-06  Score=55.10  Aligned_cols=41  Identities=27%  Similarity=0.343  Sum_probs=35.3

Q ss_pred             CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc
Q 045321          165 KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS  205 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~  205 (397)
                      ++|++|++++|.|+.+|+.+++|++|++|++++|.++.+|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46899999999999999889999999999999999987753

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.14  E-value=3.2e-07  Score=88.77  Aligned_cols=104  Identities=20%  Similarity=0.179  Sum_probs=51.4

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF  241 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l  241 (397)
                      ..++.|..|++.++.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++.+|.+..++. +..+++|+.+++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l  169 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDL  169 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccC-CccchhhhcccC
Confidence            445555555555555554433345555555555555555555 234455555555555554444433 333555555555


Q ss_pred             cCCCCCCCCCcc-ccCCCCCcEEEcCCC
Q 045321          242 GSITLPAPPKNY-SSSLKNLIFISALNP  268 (397)
Q Consensus       242 ~~~~~~~~~p~~-i~~l~~L~~l~l~~~  268 (397)
                      + ++....+... ...+.+++.+.++++
T Consensus       170 ~-~n~i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  170 S-YNRIVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             C-cchhhhhhhhhhhhccchHHHhccCC
Confidence            5 4444333322 344444444444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=7.7e-06  Score=76.98  Aligned_cols=134  Identities=18%  Similarity=0.129  Sum_probs=71.7

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCC-CCcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEE
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIP-SLKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHL  239 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L  239 (397)
                      ..+++++.|++++|.++.+|.   -..+|+.|.++++ .++.+|..+.  .+|++|++++| .+..+|..      |+.|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L  117 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSL  117 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceE
Confidence            456777778888777777762   1235777777764 3666776553  57788888877 77777653      4555


Q ss_pred             EecCCCC---CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEE
Q 045321          240 NFGSITL---PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLS  316 (397)
Q Consensus       240 ~l~~~~~---~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~  316 (397)
                      ++. .+.   ...+|.+      |+.|.+.++.-.. ...++..  -.++|+.|.+.+|..+. ++   ...+.+|+.|+
T Consensus       118 ~L~-~n~~~~L~~LPss------Lk~L~I~~~n~~~-~~~lp~~--LPsSLk~L~Is~c~~i~-LP---~~LP~SLk~L~  183 (426)
T PRK15386        118 EIK-GSATDSIKNVPNG------LTSLSINSYNPEN-QARIDNL--ISPSLKTLSLTGCSNII-LP---EKLPESLQSIT  183 (426)
T ss_pred             EeC-CCCCcccccCcch------Hhheecccccccc-ccccccc--cCCcccEEEecCCCccc-Cc---ccccccCcEEE
Confidence            554 332   3344443      3333332210000 0001100  11467777777665432 10   11156777777


Q ss_pred             Eecc
Q 045321          317 LSNT  320 (397)
Q Consensus       317 L~~~  320 (397)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            7665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=4.9e-08  Score=85.92  Aligned_cols=81  Identities=20%  Similarity=0.089  Sum_probs=39.7

Q ss_pred             CeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCCCCceEecCCCC-Cccc--CccccCCCCC
Q 045321          138 YLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLILLKHLKLNIPS-LKCL--PSLLCTILNL  213 (397)
Q Consensus       138 ~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~-i~~l--p~~~~~l~~L  213 (397)
                      .|+.+++++.....   ..+..+++.++.|+-|.+.|..+. .+-..+.+=.+|+.|+++.++ +++-  ---+.+++.|
T Consensus       186 Rlq~lDLS~s~it~---stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV---STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeH---HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            35555555544431   122444455555666666665554 233344455556666665532 4321  1123455556


Q ss_pred             cEEecCCc
Q 045321          214 QTLEMPSS  221 (397)
Q Consensus       214 ~~L~l~~~  221 (397)
                      +.|++++|
T Consensus       263 ~~LNlsWc  270 (419)
T KOG2120|consen  263 DELNLSWC  270 (419)
T ss_pred             hhcCchHh
Confidence            66666666

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.06  E-value=4.2e-07  Score=87.93  Aligned_cols=126  Identities=24%  Similarity=0.257  Sum_probs=98.2

Q ss_pred             CCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEec
Q 045321          163 KFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFG  242 (397)
Q Consensus       163 ~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~  242 (397)
                      .+..+..+.+..+.+...-..++.+++|.+|++.++.|+.+...+..+++|++|++++|.+..+.. +..++.|+.|++.
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLS  148 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheec
Confidence            345556666788877765566888999999999999999886658899999999999998888865 7788889999999


Q ss_pred             CCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhh-hcCCCCCcEEEeecC
Q 045321          243 SITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNS-LLGLHKLECLKLVNE  295 (397)
Q Consensus       243 ~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~-l~~l~~L~~L~l~~~  295 (397)
                       ++.+..+ .++..+++|+.++++++.+    ..+... +..+..++.+.+.++
T Consensus       149 -~N~i~~~-~~~~~l~~L~~l~l~~n~i----~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  149 -GNLISDI-SGLESLKSLKLLDLSYNRI----VDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             -cCcchhc-cCCccchhhhcccCCcchh----hhhhhhhhhhccchHHHhccCC
Confidence             8877666 3666689999999998844    222221 466777887777763

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=2.6e-05  Score=73.52  Aligned_cols=161  Identities=14%  Similarity=0.092  Sum_probs=95.5

Q ss_pred             ccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCC-CCCCCCccccCCCCCc
Q 045321          184 LENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSIT-LPAPPKNYSSSLKNLI  261 (397)
Q Consensus       184 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~-~~~~~p~~i~~l~~L~  261 (397)
                      +..+.+++.|++++|.++++|. +  -.+|++|.+++| .+..+|..+  ..+|++|++. +| ....+|.+      |+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls-~Cs~L~sLP~s------Le  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVC-HCPEISGLPES------VR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEcc-Ccccccccccc------cc
Confidence            4457899999999999999983 2  347999999999 888888755  2589999999 88 56677764      44


Q ss_pred             EEEcCCCeeeEEeccHHhhhcCC-CCCcEEEeecCCCeeEEEeccC-CCCCCceEEEEecccCCCCCccccccCcCCceE
Q 045321          262 FISALNPNLSCYHSGVSNSLLGL-HKLECLKLVNESKLSRVVLSKY-QFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVL  339 (397)
Q Consensus       262 ~l~l~~~~L~i~~~~~~~~l~~l-~~L~~L~l~~~~~L~~L~l~~~-~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L  339 (397)
                      .|.+..+.+    .    .+..+ ++|+.|.+.+.......  ... .++++|++|++++|.... .++.+.  .+|+.|
T Consensus       116 ~L~L~~n~~----~----~L~~LPssLk~L~I~~~n~~~~~--~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L  182 (426)
T PRK15386        116 SLEIKGSAT----D----SIKNVPNGLTSLSINSYNPENQA--RIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSI  182 (426)
T ss_pred             eEEeCCCCC----c----ccccCcchHhheecccccccccc--ccccccCCcccEEEecCCCccc-Cccccc--ccCcEE
Confidence            444544311    1    12223 34566666431111000  111 116789999999887422 222222  588889


Q ss_pred             EEecccccCceeEEeCCCCC-CCCCEEEEecCCCc
Q 045321          340 KLKQNSYLGRKLACVGSSSF-PKLTVLHLKSMYWQ  373 (397)
Q Consensus       340 ~L~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l  373 (397)
                      .++.+......++   ...+ +++ .|.+.+|-.+
T Consensus       183 ~ls~n~~~sLeI~---~~sLP~nl-~L~f~n~lkL  213 (426)
T PRK15386        183 TLHIEQKTTWNIS---FEGFPDGL-DIDLQNSVLL  213 (426)
T ss_pred             EecccccccccCc---cccccccc-Eechhhhccc
Confidence            9854422111111   1223 344 6777766433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.00  E-value=1.2e-07  Score=87.04  Aligned_cols=256  Identities=18%  Similarity=0.131  Sum_probs=125.7

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCC-cccc-cc-cccCCCCCceEecCCCC-Ccc--cCccc
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAV-LDQF-PL-GLENLILLKHLKLNIPS-LKC--LPSLL  207 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~-i~~l-p~-~~~~l~~L~~L~l~~~~-i~~--lp~~~  207 (397)
                      ..+++++.|.+.++...+  ...+.++-..++.|+.|++..|. ++.. .+ -...+++|+||+++++. |..  +-.-.
T Consensus       161 ~~CpnIehL~l~gc~~iT--d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~  238 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKIT--DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ  238 (483)
T ss_pred             hhCCchhhhhhhcceecc--HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence            455555555555544221  11223333555666666666644 3311 11 22345566666666643 332  11122


Q ss_pred             cCCCCCcEEecCCc---ccccchhhhhccccCcEEEecCCCCCCC---CCccccCCCCCcEEEcCCCeeeEEeccHHhhh
Q 045321          208 CTILNLQTLEMPSS---YVDHSLEDIWMMQKLMHLNFGSITLPAP---PKNYSSSLKNLIFISALNPNLSCYHSGVSNSL  281 (397)
Q Consensus       208 ~~l~~L~~L~l~~~---~l~~lp~~~~~L~~L~~L~l~~~~~~~~---~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l  281 (397)
                      .....++.+..++|   .+..+-..-+...-+..+++. .|....   +-..-..+..||.+..++|.- + .+....++
T Consensus       239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~-~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-~-~d~~l~aL  315 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ-HCNQLTDEDLWLIACGCHALQVLCYSSCTD-I-TDEVLWAL  315 (483)
T ss_pred             ccchhhhhhhhcccccccHHHHHHHhccChHhhccchh-hhccccchHHHHHhhhhhHhhhhcccCCCC-C-chHHHHHH
Confidence            33444555555555   111121111222233444443 332110   000112245556666555411 1 22233333


Q ss_pred             -cCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCC-cccc-ccCcCCceEEEecccccC-c---eeEE
Q 045321          282 -LGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDP-MPIM-EKLPRLQVLKLKQNSYLG-R---KLAC  353 (397)
Q Consensus       282 -~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~-~~~l-~~l~~L~~L~L~~~~~~~-~---~~~~  353 (397)
                       ...++|+.|-+.+|.++..-.+ .++...+.|+.+++.+|...... +..+ .++|.|+.|.++.+.... +   .+..
T Consensus       316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~  395 (483)
T KOG4341|consen  316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS  395 (483)
T ss_pred             hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence             3456777777777655443322 12222778888888888642222 3333 357889999886433221 1   1222


Q ss_pred             eCCCCCCCCCEEEEecCCCcCcEE-ECCCcccccccccccccc
Q 045321          354 VGSSSFPKLTVLHLKSMYWQDEWT-MGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       354 ~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~i~~C~  395 (397)
                      . ..+...|+.+.+++||.+.+-. .....+++||.+++.+|.
T Consensus       396 ~-~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  396 S-SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             c-cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            2 4667788999999998766432 223467888888888875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=1.2e-05  Score=81.76  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=86.5

Q ss_pred             CCCeEEEEEEeCcc-chhhc-c--CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCC
Q 045321          114 LANVKRCFILEDLI-EFIFL-E--QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~-~~~~~-~--~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~  189 (397)
                      ..+++++.+.+... ...++ .  .-+|.||+|.+.+-...   ...+..++.++++|+.||++++.++.+ ..+++|++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN  196 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence            34567777763221 11122 2  67899999998887664   224556668899999999999998877 77889999


Q ss_pred             CceEecCCCCCccc--CccccCCCCCcEEecCCcccccchh-------hhhccccCcEEEecCCC
Q 045321          190 LKHLKLNIPSLKCL--PSLLCTILNLQTLEMPSSYVDHSLE-------DIWMMQKLMHLNFGSIT  245 (397)
Q Consensus       190 L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~l~~lp~-------~~~~L~~L~~L~l~~~~  245 (397)
                      |+.|.+++-.++.-  -..+.+|++|++||++......-+.       .-..|++||.||.+ ++
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS-gT  260 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS-GT  260 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC-Cc
Confidence            99998887665532  2467789999999998773222221       11237788888777 54

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=7.8e-06  Score=83.10  Aligned_cols=130  Identities=20%  Similarity=0.165  Sum_probs=81.1

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcc--cccccccCCCCCceEecCCCCCcccCccccCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLD--QFPLGLENLILLKHLKLNIPSLKCLPSLLCTI  210 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l  210 (397)
                      ..-.+|+.|.+.+....   .... ..+-..+|.||.|.+.+-.+.  ++-.-..++++|+.||+++++++.+ ..+++|
T Consensus       119 ~sr~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L  194 (699)
T KOG3665|consen  119 ESRQNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL  194 (699)
T ss_pred             HHHHhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence            44567777777775443   1122 444466778888888776654  3334445777888888888888777 678888


Q ss_pred             CCCcEEecCCcccccch--hhhhccccCcEEEecCCCCCCCCCcc-------ccCCCCCcEEEcCCC
Q 045321          211 LNLQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAPPKNY-------SSSLKNLIFISALNP  268 (397)
Q Consensus       211 ~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~~-------i~~l~~L~~l~l~~~  268 (397)
                      ++||+|.+++=.+..-+  ..+-+|++|++||++ .......+..       -..|++|+.+++++.
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS-~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDIS-RDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeecc-ccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            88888877765444322  246678888888887 4432222211       122667777777765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=4.5e-06  Score=65.43  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=67.0

Q ss_pred             cCCCeeEEEEcCCCCccccccccc-CCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEE
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLE-NLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLN  240 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~  240 (397)
                      ....+|...++++|.+..+|+.+. +.+.++.|++++|.|.++|.++..++.|+.|+++.|.+...|.-+..|.++-.|+
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            566677778888888887776665 3347778888888888888888888888888888887777777777788888887


Q ss_pred             ecCCCCCCCCC
Q 045321          241 FGSITLPAPPK  251 (397)
Q Consensus       241 l~~~~~~~~~p  251 (397)
                      .. ++....+|
T Consensus       130 s~-~na~~eid  139 (177)
T KOG4579|consen  130 SP-ENARAEID  139 (177)
T ss_pred             CC-CCccccCc
Confidence            77 66555555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.80  E-value=4.5e-07  Score=83.41  Aligned_cols=58  Identities=24%  Similarity=0.279  Sum_probs=22.8

Q ss_pred             CCCCcEEEeecCCCeeEEEec-cCCCCCCceEEEEeccc-CCCCCccccc-cCcCCceEEE
Q 045321          284 LHKLECLKLVNESKLSRVVLS-KYQFPLSLSHLSLSNTE-LMQDPMPIME-KLPRLQVLKL  341 (397)
Q Consensus       284 l~~L~~L~l~~~~~L~~L~l~-~~~~l~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~L  341 (397)
                      +..|+.|..++|.++....+| ++.-.++|+.|.++.|+ +....+..++ +++.|+.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~  353 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL  353 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence            344455554444433332221 11114455555555543 2222222222 2445555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.70  E-value=2.8e-06  Score=66.59  Aligned_cols=104  Identities=18%  Similarity=0.168  Sum_probs=86.0

Q ss_pred             CCeeEEEEcCCCCccccc---ccccCCCCCceEecCCCCCcccCccccCC-CCCcEEecCCcccccchhhhhccccCcEE
Q 045321          164 FKYLRLLNLGYAVLDQFP---LGLENLILLKHLKLNIPSLKCLPSLLCTI-LNLQTLEMPSSYVDHSLEDIWMMQKLMHL  239 (397)
Q Consensus       164 l~~Lr~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~i~~lp~~~~~l-~~L~~L~l~~~~l~~lp~~~~~L~~L~~L  239 (397)
                      -+.+..++|++|++-.++   ..+....+|+..++++|.++.+|+.+... +-+++|++.+|.+.++|..+..++.|+.|
T Consensus        26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            345677899999866444   44556778888899999999999877644 48999999999999999999999999999


Q ss_pred             EecCCCCCCCCCccccCCCCCcEEEcCCC
Q 045321          240 NFGSITLPAPPKNYSSSLKNLIFISALNP  268 (397)
Q Consensus       240 ~l~~~~~~~~~p~~i~~l~~L~~l~l~~~  268 (397)
                      ++. .+.....|.-|..|.++..++..++
T Consensus       106 Nl~-~N~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  106 NLR-FNPLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             ccc-cCccccchHHHHHHHhHHHhcCCCC
Confidence            999 8888888888888888877777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.37  E-value=0.00016  Score=63.36  Aligned_cols=228  Identities=16%  Similarity=0.119  Sum_probs=127.0

Q ss_pred             cCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCC--CC-C-cccCc-------cccCCCCCcEEecCCc-ccc
Q 045321          162 EKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNI--PS-L-KCLPS-------LLCTILNLQTLEMPSS-YVD  224 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~--~~-i-~~lp~-------~~~~l~~L~~L~l~~~-~l~  224 (397)
                      ..+..+..++|+||.|.     .+...|.+-.+|+..+++.  ++ . .++|+       .+-++++||+.+++.| .-.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            44667777777777765     3444555666777777665  22 1 13443       3457788888888888 222


Q ss_pred             cchh----hhhccccCcEEEecCCCCCCCCCc--------------cccCCCCCcEEEcCCCeeeEEe-ccHHhhhcCCC
Q 045321          225 HSLE----DIWMMQKLMHLNFGSITLPAPPKN--------------YSSSLKNLIFISALNPNLSCYH-SGVSNSLLGLH  285 (397)
Q Consensus       225 ~lp~----~~~~L~~L~~L~l~~~~~~~~~p~--------------~i~~l~~L~~l~l~~~~L~i~~-~~~~~~l~~l~  285 (397)
                      +.|.    -|++-+.|.||.++ +|....+..              .+.+-+.|+++.++.|.+.-.. ......+..-.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~-NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLN-NNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEee-cCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            3333    36666788999988 775433321              1334577888888877552111 11222333335


Q ss_pred             CCcEEEeecC---C-CeeEEEe-ccCCCCCCceEEEEecccCCCCCccc----cccCcCCceEEEecccccC-cee----
Q 045321          286 KLECLKLVNE---S-KLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPI----MEKLPRLQVLKLKQNSYLG-RKL----  351 (397)
Q Consensus       286 ~L~~L~l~~~---~-~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~----l~~l~~L~~L~L~~~~~~~-~~~----  351 (397)
                      +|+.+.+..+   | ....|-+ .... +.+|+.|+|.+|.++...-..    +..++.|+.|.+ +.|... +..    
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l-nDClls~~G~~~v~  263 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL-NDCLLSNEGVKSVL  263 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccc-cchhhccccHHHHH
Confidence            6777777653   1 1111100 1222 778888999888765443333    345677888888 444321 110    


Q ss_pred             -EEeCCCCCCCCCEEEEecCCCcCc-E------EECCCcccccccccccc
Q 045321          352 -ACVGSSSFPKLTVLHLKSMYWQDE-W------TMGAGAMPKLESLIVNP  393 (397)
Q Consensus       352 -~~~~~~~~~~L~~L~l~~~~~l~~-~------~~~~~~~p~L~~L~i~~  393 (397)
                       .+. ...+|+|..|...+...-.. +      .+..+++|-|..|.+.+
T Consensus       264 ~~f~-e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng  312 (388)
T COG5238         264 RRFN-EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG  312 (388)
T ss_pred             HHhh-hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence             011 23467788777776422111 1      12356778877777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.37  E-value=2.2e-06  Score=84.16  Aligned_cols=98  Identities=19%  Similarity=0.134  Sum_probs=57.3

Q ss_pred             eEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321          167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT  245 (397)
Q Consensus       167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~  245 (397)
                      |.+.+.++|.+..+-.++.-++.|+.|+|++|++...- .+..+++|++||+++|.+..+|.- .... +|+.|.+. ++
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr-nN  242 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR-NN  242 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeec-cc
Confidence            44455555555555555666666666677666665553 456666666777766666666542 1112 36666666 55


Q ss_pred             CCCCCCccccCCCCCcEEEcCCC
Q 045321          246 LPAPPKNYSSSLKNLIFISALNP  268 (397)
Q Consensus       246 ~~~~~p~~i~~l~~L~~l~l~~~  268 (397)
                      ....+ .+|.+|++|+.++++.|
T Consensus       243 ~l~tL-~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  243 ALTTL-RGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             HHHhh-hhHHhhhhhhccchhHh
Confidence            44443 46666666666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=5.2e-05  Score=67.23  Aligned_cols=116  Identities=18%  Similarity=0.220  Sum_probs=64.6

Q ss_pred             HHhhhcCCCCCcEEEeecCCCeeEEEe---ccCCCCCCceEEEEecccCCC--CCccccccCcCCceEEEecccccCcee
Q 045321          277 VSNSLLGLHKLECLKLVNESKLSRVVL---SKYQFPLSLSHLSLSNTELMQ--DPMPIMEKLPRLQVLKLKQNSYLGRKL  351 (397)
Q Consensus       277 ~~~~l~~l~~L~~L~l~~~~~L~~L~l---~~~~~l~~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~  351 (397)
                      ....+..++.++.|+++. .+++.+.+   ....+-+.+.+|....|....  ....--.-+|++..+.+..+......-
T Consensus       138 ~~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~  216 (418)
T KOG2982|consen  138 STSSLDDLPKVTELHMSD-NSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS  216 (418)
T ss_pred             hhhhhhcchhhhhhhhcc-chhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh
Confidence            344455566666666654 33333332   111112345555555553210  001111236888888886665555443


Q ss_pred             EEeCCCCCCCCCEEEEecCCCcCcEEE--CCCcccccccccccccc
Q 045321          352 ACVGSSSFPKLTVLHLKSMYWQDEWTM--GAGAMPKLESLIVNPCA  395 (397)
Q Consensus       352 ~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~p~L~~L~i~~C~  395 (397)
                      .-. ...+|.+..|.+.. .++.+|..  ....||.|..|.+.+-|
T Consensus       217 ek~-se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  217 EKG-SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             ccc-CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCc
Confidence            333 67788888888876 45777742  34578999988887765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.15  E-value=2.7e-05  Score=76.82  Aligned_cols=98  Identities=18%  Similarity=0.237  Sum_probs=45.0

Q ss_pred             CCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccccccc-ccCCCCCceEecCCCCCcccCccccCCCCCc
Q 045321          136 GMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPSLLCTILNLQ  214 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~  214 (397)
                      ++.++.|+++.+...     ... .+..++.|+.||+++|.+..+|.- ...+ +|..|.+++|.++++ ..+.+|.+|+
T Consensus       186 l~ale~LnLshNk~~-----~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~  257 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFT-----KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLY  257 (1096)
T ss_pred             HHHhhhhccchhhhh-----hhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhh
Confidence            444555555554443     112 224555555555555555544431 1112 255555555555555 3355555555


Q ss_pred             EEecCCccc---ccchhhhhccccCcEEEec
Q 045321          215 TLEMPSSYV---DHSLEDIWMMQKLMHLNFG  242 (397)
Q Consensus       215 ~L~l~~~~l---~~lp~~~~~L~~L~~L~l~  242 (397)
                      .||+++|-+   .++-. ++.|..|+.|.+.
T Consensus       258 ~LDlsyNll~~hseL~p-LwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEP-LWSLSSLIVLWLE  287 (1096)
T ss_pred             ccchhHhhhhcchhhhH-HHHHHHHHHHhhc
Confidence            555555522   22211 4444555555555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.11  E-value=0.00084  Score=56.45  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=22.2

Q ss_pred             CceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhc-cccCcEEEec
Q 045321          190 LKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWM-MQKLMHLNFG  242 (397)
Q Consensus       190 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~-L~~L~~L~l~  242 (397)
                      ...+|++.|.+..++ .+..+..|++|.+..|.+.++-+.+.. +++|..|.+.
T Consensus        44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            344455555444432 233444455555544444444333322 2234444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=6.4e-05  Score=66.03  Aligned_cols=101  Identities=19%  Similarity=0.235  Sum_probs=75.5

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccC--ccccCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLP--SLLCTIL  211 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~  211 (397)
                      .++.+.+.|++.++...+      -+++.+|+.|.||.|+-|+|+.+ ..+..+++|+.|.|+.|.|..+.  ..+.+++
T Consensus        16 sdl~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             hHHHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            445677778888887753      45668999999999999999877 45788999999999998887653  4567888


Q ss_pred             CCcEEecCCc-ccccch-----hhhhccccCcEEEe
Q 045321          212 NLQTLEMPSS-YVDHSL-----EDIWMMQKLMHLNF  241 (397)
Q Consensus       212 ~L~~L~l~~~-~l~~lp-----~~~~~L~~L~~L~l  241 (397)
                      +|++|.|..| .-.+-+     ..+.-|++|+.||=
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            8999988776 222222     23667888888864

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.74  E-value=0.0031  Score=53.16  Aligned_cols=100  Identities=21%  Similarity=0.129  Sum_probs=67.0

Q ss_pred             CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccC-CCCCcEEecCCcccccchh--hhhccccCcEEEe
Q 045321          165 KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCT-ILNLQTLEMPSSYVDHSLE--DIWMMQKLMHLNF  241 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l  241 (397)
                      .+...+||++|.+..++ .+..+..|.+|.+.+|+|..+-+.+.. +++|++|.+.+|+++++-+  .+..+++|++|.+
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            45567888888876553 356778888888888888877666654 5678999998887777653  2566778888887


Q ss_pred             cCCCCCCCCCc----cccCCCCCcEEEcC
Q 045321          242 GSITLPAPPKN----YSSSLKNLIFISAL  266 (397)
Q Consensus       242 ~~~~~~~~~p~----~i~~l~~L~~l~l~  266 (397)
                      - ++....-+.    -+..+++|++|+..
T Consensus       121 l-~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  121 L-GNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             c-CCchhcccCceeEEEEecCcceEeehh
Confidence            7 554332221    24445556655554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.39  E-value=0.0019  Score=56.50  Aligned_cols=91  Identities=20%  Similarity=0.121  Sum_probs=58.3

Q ss_pred             cCCCeeEEEEcCCCC--cc-cccccccCCCCCceEecCCCCCc---ccCccccCCCCCcEEecCCcccccch----hhhh
Q 045321          162 EKFKYLRLLNLGYAV--LD-QFPLGLENLILLKHLKLNIPSLK---CLPSLLCTILNLQTLEMPSSYVDHSL----EDIW  231 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~--i~-~lp~~~~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~l~~lp----~~~~  231 (397)
                      ..++.|+.|.++.|.  +. .++-...++++|++|++++|+|+   ++ ..+..+.+|..|++..|....+-    ..+.
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            667778888888883  33 44444455688888888888765   33 23567777888888888443332    2255


Q ss_pred             ccccCcEEEecCCCCCCCCCccc
Q 045321          232 MMQKLMHLNFGSITLPAPPKNYS  254 (397)
Q Consensus       232 ~L~~L~~L~l~~~~~~~~~p~~i  254 (397)
                      -+++|++|+-. .......|...
T Consensus       141 ll~~L~~LD~~-dv~~~Ea~~~~  162 (260)
T KOG2739|consen  141 LLPSLKYLDGC-DVDGEEAPEAD  162 (260)
T ss_pred             Hhhhhcccccc-ccCCccccccc
Confidence            67788888766 55555555433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.34  E-value=0.00047  Score=68.00  Aligned_cols=134  Identities=16%  Similarity=0.063  Sum_probs=78.0

Q ss_pred             hHHhcCCCeeEEEEcCCCC-ccc--ccccccCCCCCceEecCCC-C-Ccc----cCccccCCCCCcEEecCCcc-cccch
Q 045321          158 ENFCEKFKYLRLLNLGYAV-LDQ--FPLGLENLILLKHLKLNIP-S-LKC----LPSLLCTILNLQTLEMPSSY-VDHSL  227 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~-i~~--lp~~~~~l~~L~~L~l~~~-~-i~~----lp~~~~~l~~L~~L~l~~~~-l~~lp  227 (397)
                      ..+...++.|+.|.+.++. +..  +-......++|+.|+++++ . +..    .+.....+.+|+.|++++|. +...-
T Consensus       181 ~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  181 LRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             HHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence            4444567888888888886 543  3355667889999998863 2 111    12234456888999998883 44432


Q ss_pred             -hhhh-ccccCcEEEecCCCCC-C--CCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321          228 -EDIW-MMQKLMHLNFGSITLP-A--PPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV  293 (397)
Q Consensus       228 -~~~~-~L~~L~~L~l~~~~~~-~--~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~  293 (397)
                       ..+. .+++|++|.+. +|.. .  .+-.....+++|+.+++++|.- +....+......+++|+.|.+.
T Consensus       261 l~~l~~~c~~L~~L~l~-~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~-~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLS-NCSNLTDEGLVSIAERCPSLRELDLSGCHG-LTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HHHHHhhCCCcceEccC-CCCccchhHHHHHHHhcCcccEEeeecCcc-chHHHHHHHHHhCcchhhhhhh
Confidence             1222 36788888876 6653 1  1222234567788888887622 1112233334445555554433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.20  E-value=0.0015  Score=34.29  Aligned_cols=15  Identities=33%  Similarity=0.461  Sum_probs=5.7

Q ss_pred             ceEecCCCCCcccCc
Q 045321          191 KHLKLNIPSLKCLPS  205 (397)
Q Consensus       191 ~~L~l~~~~i~~lp~  205 (397)
                      ++|++++|.++++|+
T Consensus         3 ~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    3 EYLDLSGNNLTSIPS   17 (22)
T ss_dssp             SEEEETSSEESEEGT
T ss_pred             cEEECCCCcCEeCCh
Confidence            333333333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.12  E-value=0.0088  Score=52.81  Aligned_cols=40  Identities=30%  Similarity=0.302  Sum_probs=22.5

Q ss_pred             cCCCeeEEEEcCCCCcc-ccc----ccccCCCCCceEecCCCCCc
Q 045321          162 EKFKYLRLLNLGYAVLD-QFP----LGLENLILLKHLKLNIPSLK  201 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~-~lp----~~~~~l~~L~~L~l~~~~i~  201 (397)
                      -+|++|...+|+.|.+. ..|    +.|++-..|.+|.+++|.+.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            56666666666666644 222    33445556666666666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.94  E-value=0.00043  Score=61.02  Aligned_cols=82  Identities=20%  Similarity=0.166  Sum_probs=66.9

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchh--hhhccccCcEE
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLE--DIWMMQKLMHL  239 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L  239 (397)
                      +.+...+.|+++||.++.+ +-..+|+.|+.|.|+-|.|+.| ..+..+++|++|.|+.|.|..+-.  -+.++++||.|
T Consensus        16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3455678899999998865 3456899999999999999999 458899999999999997777654  37789999999


Q ss_pred             EecCCCC
Q 045321          240 NFGSITL  246 (397)
Q Consensus       240 ~l~~~~~  246 (397)
                      -+. .+.
T Consensus        94 WL~-ENP   99 (388)
T KOG2123|consen   94 WLD-ENP   99 (388)
T ss_pred             hhc-cCC
Confidence            887 543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.94  E-value=0.0035  Score=32.89  Aligned_cols=21  Identities=14%  Similarity=0.178  Sum_probs=16.2

Q ss_pred             CCcEEecCCcccccchhhhhc
Q 045321          212 NLQTLEMPSSYVDHSLEDIWM  232 (397)
Q Consensus       212 ~L~~L~l~~~~l~~lp~~~~~  232 (397)
                      +|++|++++|.++.+|+++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            478888888877788877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.89  E-value=0.0004  Score=68.51  Aligned_cols=110  Identities=21%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             CCCCCceEecCCCC-Ccc--cCccccCCCCCcEEecCCc--ccccch----hhhhccccCcEEEecCCCCC-CC-CCccc
Q 045321          186 NLILLKHLKLNIPS-LKC--LPSLLCTILNLQTLEMPSS--YVDHSL----EDIWMMQKLMHLNFGSITLP-AP-PKNYS  254 (397)
Q Consensus       186 ~l~~L~~L~l~~~~-i~~--lp~~~~~l~~L~~L~l~~~--~l~~lp----~~~~~L~~L~~L~l~~~~~~-~~-~p~~i  254 (397)
                      ..+.|+.|.+.++. +..  +-......++|+.|++++|  .....+    .....+++|+.|++. .|.. .. .-..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~isd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS-GCGLVTDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh-hhhccCchhHHHH
Confidence            36777778777753 443  3345567788888888873  222222    223345678888887 6542 11 11122


Q ss_pred             c-CCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCC
Q 045321          255 S-SLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESK  297 (397)
Q Consensus       255 ~-~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~  297 (397)
                      + .+++|+.+.+.+|.- ++...+......+++|++|++++|..
T Consensus       265 ~~~c~~L~~L~l~~c~~-lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSN-LTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCc-cchhHHHHHHHhcCcccEEeeecCcc
Confidence            2 256777777666531 22344555556677788888877643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.86  E-value=0.0036  Score=54.80  Aligned_cols=86  Identities=20%  Similarity=0.178  Sum_probs=57.6

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCC--CCc-ccCccccCCCCCcEEecCCccccc---chhhhhcccc
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIP--SLK-CLPSLLCTILNLQTLEMPSSYVDH---SLEDIWMMQK  235 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~l~~---lp~~~~~L~~  235 (397)
                      ..+..|..|++.+..++.+ ..+..|++|++|.++.|  ++. .++....++++|++|++++|+++.   +++ +..+.+
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcc
Confidence            4444555555666555433 23456789999999988  443 566666677999999999995543   332 566778


Q ss_pred             CcEEEecCCCCCCCC
Q 045321          236 LMHLNFGSITLPAPP  250 (397)
Q Consensus       236 L~~L~l~~~~~~~~~  250 (397)
                      |..|++. +|....+
T Consensus       118 L~~Ldl~-n~~~~~l  131 (260)
T KOG2739|consen  118 LKSLDLF-NCSVTNL  131 (260)
T ss_pred             hhhhhcc-cCCcccc
Confidence            8888888 7765443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.47  E-value=0.025  Score=27.46  Aligned_cols=15  Identities=33%  Similarity=0.381  Sum_probs=5.3

Q ss_pred             CCceEecCCCCCccc
Q 045321          189 LLKHLKLNIPSLKCL  203 (397)
Q Consensus       189 ~L~~L~l~~~~i~~l  203 (397)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.42  E-value=0.024  Score=27.54  Aligned_cols=16  Identities=25%  Similarity=0.395  Sum_probs=6.6

Q ss_pred             CCcEEecCCcccccch
Q 045321          212 NLQTLEMPSSYVDHSL  227 (397)
Q Consensus       212 ~L~~L~l~~~~l~~lp  227 (397)
                      +|++|++++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.22  E-value=0.007  Score=51.06  Aligned_cols=80  Identities=21%  Similarity=0.213  Sum_probs=46.5

Q ss_pred             CcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEeccc-CCCCCccccccCcCCc
Q 045321          260 LIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTE-LMQDPMPIMEKLPRLQ  337 (397)
Q Consensus       260 L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~  337 (397)
                      .+.++.+++.+   ...-.+.+..++.++.|.+..|.++..-.+ .++...++|+.|+|++|. +++..+..+..+++|+
T Consensus       103 IeaVDAsds~I---~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  103 IEAVDASDSSI---MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             EEEEecCCchH---HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            34466665533   233344556666666666666643332221 122237788888888774 5556666677777777


Q ss_pred             eEEEe
Q 045321          338 VLKLK  342 (397)
Q Consensus       338 ~L~L~  342 (397)
                      .|.|.
T Consensus       180 ~L~l~  184 (221)
T KOG3864|consen  180 RLHLY  184 (221)
T ss_pred             HHHhc
Confidence            77773

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.15  E-value=0.003  Score=53.25  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=40.2

Q ss_pred             ceEEEEecccCCCCCccccccCcCCceEEEeccccc-CceeEEeCCCCCCCCCEEEEecCCCcCcEE-ECCCcccccccc
Q 045321          312 LSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYL-GRKLACVGSSSFPKLTVLHLKSMYWQDEWT-MGAGAMPKLESL  389 (397)
Q Consensus       312 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L  389 (397)
                      ++.++-+++.+..+.+..+.++++++.|.+.++.+. +..+... .+..++|+.|+|++|+.+++-- .....+++|+.|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            344555555554455555666666666666332221 1111111 2345666666666666554321 112345666666


Q ss_pred             cccccc
Q 045321          390 IVNPCA  395 (397)
Q Consensus       390 ~i~~C~  395 (397)
                      .+++-|
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            655543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.67  E-value=0.23  Score=39.09  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=27.0

Q ss_pred             hcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCc
Q 045321          161 CEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLM  237 (397)
Q Consensus       161 ~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~  237 (397)
                      |..++.|+.+.+.++ +..++ ..+.++..++++.+.. .+..++.. +..+++|+.+++..+ +..++.. +.+. +|+
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~  106 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK  106 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred             ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence            355555555555443 33332 2233444455555543 33333322 223455555555332 3333332 3333 444


Q ss_pred             EEEec
Q 045321          238 HLNFG  242 (397)
Q Consensus       238 ~L~l~  242 (397)
                      .+.+.
T Consensus       107 ~i~~~  111 (129)
T PF13306_consen  107 EINIP  111 (129)
T ss_dssp             EEE-T
T ss_pred             EEEEC
Confidence            44443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.40  E-value=0.0022  Score=55.18  Aligned_cols=81  Identities=15%  Similarity=0.044  Sum_probs=55.4

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF  241 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l  241 (397)
                      ..++..++||++.+.+..+-..++.+..|..|+++.+.+..+|++.+.+..+..+++..|+....|.+.++++.+++++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            55666677777777665555556666666667777677777777777776677777666666777777777777777666


Q ss_pred             c
Q 045321          242 G  242 (397)
Q Consensus       242 ~  242 (397)
                      -
T Consensus       119 k  119 (326)
T KOG0473|consen  119 K  119 (326)
T ss_pred             c
Confidence            5

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.66  E-value=0.15  Score=27.67  Aligned_cols=19  Identities=32%  Similarity=0.338  Sum_probs=9.3

Q ss_pred             CCCceEecCCCCCcccCcc
Q 045321          188 ILLKHLKLNIPSLKCLPSL  206 (397)
Q Consensus       188 ~~L~~L~l~~~~i~~lp~~  206 (397)
                      .+|++|++++|.++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3445555555555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.66  E-value=0.15  Score=27.67  Aligned_cols=19  Identities=32%  Similarity=0.338  Sum_probs=9.3

Q ss_pred             CCCceEecCCCCCcccCcc
Q 045321          188 ILLKHLKLNIPSLKCLPSL  206 (397)
Q Consensus       188 ~~L~~L~l~~~~i~~lp~~  206 (397)
                      .+|++|++++|.++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3445555555555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.26  E-value=0.25  Score=26.77  Aligned_cols=20  Identities=15%  Similarity=0.285  Sum_probs=15.4

Q ss_pred             CCCCcEEecCCcccccchhh
Q 045321          210 ILNLQTLEMPSSYVDHSLED  229 (397)
Q Consensus       210 l~~L~~L~l~~~~l~~lp~~  229 (397)
                      +++|++|++.+|.+..+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            45788888888888888765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.26  E-value=0.25  Score=26.77  Aligned_cols=20  Identities=15%  Similarity=0.285  Sum_probs=15.4

Q ss_pred             CCCCcEEecCCcccccchhh
Q 045321          210 ILNLQTLEMPSSYVDHSLED  229 (397)
Q Consensus       210 l~~L~~L~l~~~~l~~lp~~  229 (397)
                      +++|++|++.+|.+..+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            45788888888888888765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.32  E-value=0.013  Score=50.59  Aligned_cols=86  Identities=8%  Similarity=-0.011  Sum_probs=74.0

Q ss_pred             ccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCc
Q 045321          182 LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLI  261 (397)
Q Consensus       182 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~  261 (397)
                      ..+...+.-+.||++.+++..+-..++.++.|..|+++.+.+..+|...+.+..+++++.. ++.....|.+.+.++.++
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~-~n~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASH-KNNHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhh-ccchhhCCccccccCCcc
Confidence            3466777888999999988888888888999999999999999999999999999999998 776778888888888888


Q ss_pred             EEEcCCC
Q 045321          262 FISALNP  268 (397)
Q Consensus       262 ~l~l~~~  268 (397)
                      ..+..++
T Consensus       115 ~~e~k~~  121 (326)
T KOG0473|consen  115 KNEQKKT  121 (326)
T ss_pred             hhhhccC
Confidence            8777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.38  E-value=1.5  Score=34.30  Aligned_cols=111  Identities=18%  Similarity=0.163  Sum_probs=53.2

Q ss_pred             CCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCC
Q 045321          115 ANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILL  190 (397)
Q Consensus       115 ~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L  190 (397)
                      .+++.+.+. +....+...  ..+++++.+.+... ..     .+ ...|..++.++.+.+.. .+..++ ..+..+.+|
T Consensus        12 ~~l~~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~~-~~-----~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen   12 SNLESITFP-NTIKKIGENAFSNCTSLKSINFPNN-LT-----SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TT--EEEET-ST--EE-TTTTTT-TT-SEEEESST-TS-----CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             CCCCEEEEC-CCeeEeChhhccccccccccccccc-cc-----ccceeeeecccccccccccc-cccccccccccccccc
Confidence            356666665 443333333  66778999888764 22     44 45558887899999976 444444 345668899


Q ss_pred             ceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccC
Q 045321          191 KHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKL  236 (397)
Q Consensus       191 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L  236 (397)
                      +.+.+..+ +..++.. +.+. +|+.+.+.. .+..++.. +.+.++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            99998764 6655543 4454 888887765 44444433 4444444

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.36  E-value=0.58  Score=25.39  Aligned_cols=14  Identities=29%  Similarity=0.574  Sum_probs=9.6

Q ss_pred             cccccccccccccC
Q 045321          383 MPKLESLIVNPCAY  396 (397)
Q Consensus       383 ~p~L~~L~i~~C~~  396 (397)
                      +|+|+.|++++|++
T Consensus         1 c~~L~~L~l~~C~~   14 (26)
T smart00367        1 CPNLRELDLSGCTN   14 (26)
T ss_pred             CCCCCEeCCCCCCC
Confidence            36677777777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-12
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	6e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 6e-14
 Identities = 52/260 (20%), Positives = 93/260 (35%), Gaps = 54/260 (20%)

Query: 18  LKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRA 77
            +     L VFPPS  I T  L  +W          +      + +L       V K+  
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIW------FDVIKSDVMVVVNKLHKYSL--VEKQPK 422

Query: 78  GGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLA--NVKRCFILEDLIEFIFLEQS 135
             TI    +PS+ Y  L +  E              +   N+ + F  +DLI        
Sbjct: 423 ESTI---SIPSI-YLELKVKLEN-----EYALHRSIVDHYNIPKTFDSDDLI----PPYL 469

Query: 136 GMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKL 195
             Y  S + H     HL  I+     E+    R++ L +  L+Q           K ++ 
Sbjct: 470 DQYFYSHIGH-----HLKNIEHP---ERMTLFRMVFLDFRFLEQ-----------K-IRH 509

Query: 196 NIPSLKCLPSLLCTILNLQTLEMPSSYV-DHSLEDIWMMQKLMHLNFGSITLPAPPKN-Y 253
           +  +     S+L T   LQ L+    Y+ D+  +   ++  ++   F    LP   +N  
Sbjct: 510 DSTAWNASGSILNT---LQQLKFYKPYICDNDPKYERLVNAILD--F----LPKIEENLI 560

Query: 254 SSSLKNLIFISALNPNLSCY 273
            S   +L+ I+ +  + + +
Sbjct: 561 CSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 59/399 (14%), Positives = 115/399 (28%), Gaps = 143/399 (35%)

Query: 78  GGTIKACYVPSLVYYSLLLVAEKTRFVLMPDKEEESLA------NVKRCFILEDLIEFIF 131
            G+ K             +  +    V +  K +  +       N+K C   E ++E   
Sbjct: 159 LGSGKTW-----------VALD----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--- 200

Query: 132 LEQSGMYLQSFLNHSSESDHLALI--DCENFCEKFKYLRLLNLGYA----VLD------- 178
                +  Q   N +S SDH + I     +   + + L L +  Y     VL        
Sbjct: 201 -MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKA 258

Query: 179 --QFPLGLENLIL--------------LKHLKLNIPSLKCLP----SLLCTILNLQTLEM 218
              F L  + L+                 H+ L+  S+   P    SLL   L+ +  ++
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 219 PSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLI--FISALNPNL-- 270
           P   +  +   + ++ + +          A   N+       L  +I   ++ L P    
Sbjct: 319 PREVLTTNPRRLSIIAESIRDG------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 271 SCYHS------GV---------------------------SNSLL------------GLH 285
             +                                       SL+             ++
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 286 KLECLKLVNESKLSRVVLSKYQFPLSL---------------SHLS--LSNTELMQDPMP 328
               +KL NE  L R ++  Y  P +                SH+   L N E  +    
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER--- 489

Query: 329 IMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL 367
            M     +  L  +   +L +K+    ++     ++L+ 
Sbjct: 490 -MTLFRMV-FLDFR---FLEQKIRHDSTAWNASGSILNT 523

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 10  SVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGF 69
           SV  L   +K     L +    +K+ T+ L  LW  E        E  E  L+E +++  
Sbjct: 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSL 423

Query: 70  FQVSKRRAGGTIKACYV 86
               +    G     Y+
Sbjct: 424 LFCDRN---GKSFRYYL 437

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 66.2 bits (161), Expect = 6e-12
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 10  SVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYN--SEETAEHYLKELIHR 67
            V  LS   ++   +  V PP + I  +    +   +         ++     LK L  R
Sbjct: 381 CVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKR 440

Query: 68  GFFQVSKRRAGGTIKACYV 86
           G     KR    T K  ++
Sbjct: 441 GALLSGKRMPVLTFKIDHI 459

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 21/207 (10%)

Query: 167 LRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPSLLCTIL-NLQTLEMPSSYVD 224
           L  L +    L  +    L+++  + HL L++     L  +   IL +++ LE+  + + 
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 225 H----SLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNS 280
                 L    +   +  L F    L     N    L   I        +         +
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL---ELSEVEFDD----CT 262

Query: 281 LLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLK 340
           L GL      +    S+L +V        +++  L +    L  D   +   L +++ + 
Sbjct: 263 LNGLGDFNPSESDVVSELGKVET------VTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 341 LKQNSYLGRKLACVGSSSFPKLTVLHL 367
           ++ +      + C  S     L  L L
Sbjct: 317 VENSKV--FLVPCSFSQHLKSLEFLDL 341

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 41/211 (19%), Positives = 71/211 (33%), Gaps = 21/211 (9%)

Query: 164 FKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYV 223
              +  ++L    +      +      + L +    LK  P+L      L++L + +   
Sbjct: 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLP--FLKSLTL-TMNK 339

Query: 224 DHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNL------SCYHSGV 277
                    +  L +L+           N  S      +      +L            +
Sbjct: 340 GSISFKKVALPSLSYLDLSR--------NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391

Query: 278 SNSLLGLHKLECLKLVNESKLSRVV-LSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRL 336
           S + +GL +L+ L     S L RV   S +     L +L +S T    D   I   L  L
Sbjct: 392 SANFMGLEELQHLDF-QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 337 QVLKLKQNSYLGRKLACVGSSSFPKLTVLHL 367
             LK+  NS+    L+ V  ++   LT L L
Sbjct: 451 NTLKMAGNSFKDNTLSNV-FANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 16/211 (7%)

Query: 164 FKYLRLLNLGYAVLDQFPLGLENLILLKHLKL---NIPSLKCLPSLLCTILNLQTLEMPS 220
             +L+ L L              L  L +L L    +    C         +L+ L++  
Sbjct: 327 LPFLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 221 SYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYS-SSLKNLIFISALNPNLSCYHSGVSN 279
           +       +   +++L HL+F   TL    +  +  SL+ L+++     N      G   
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG--- 442

Query: 280 SLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVL 339
             LGL  L  LK+   S     + + +    +L+ L LS  +L Q    + + L RLQ+L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 340 KLKQNSYLGRKLACVGSSSF---PKLTVLHL 367
            +  N      L  + SS +     L+ L  
Sbjct: 503 NMSHN-----NLLFLDSSHYNQLYSLSTLDC 528

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 23/222 (10%)

Query: 159 NFCEKFKYLRLLNLGYAVLDQFP----LGLENL-ILLKHLKLNIPSLKCLPSLLCTILNL 213
            +      L  L+L    +          L  + +L   L L++  +  +       + L
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 214 QTLEMPSSYVDHSLEDIWM-------MQKLMHLNF-GSITLPAPPKNYSSSLKNLIFISA 265
             L + +++   ++    +       + +L+   F     L    K+    L NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 266 LNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQD 325
               L  Y   + +    L  +    LV+   + R  +  + +     HL L N +  Q 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVS-VTIER--VKDFSYNFGWQHLELVNCKFGQF 319

Query: 326 PMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL 367
           P   ++ L RL     K  +              P L  L L
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAF-------SEVDLPSLEFLDL 354

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 28/205 (13%), Positives = 55/205 (26%), Gaps = 38/205 (18%)

Query: 170 LNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED 229
           LNL    +     G  +  + + L         +         +Q+L +           
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL----------- 232

Query: 230 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIF----ISALNPNLSCYHSGVSNSLLGLH 285
                    ++   I+          S++++         ++ N          +     
Sbjct: 233 ----GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN----------TFHCFS 278

Query: 286 KLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS 345
            L+ L L   + LS +         +L  L LS  +            P L  L +K N+
Sbjct: 279 GLQELDLTA-THLSELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 346 YLGRKLACVGSSSF---PKLTVLHL 367
                   +G+        L  L L
Sbjct: 337 KRLE----LGTGCLENLENLRELDL 357

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 7/209 (3%)

Query: 164 FKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTIL-NLQTLEMP--S 220
           F  L+ L+L    L + P GL  L  LK L L+    + L  +  +   +L  L +   +
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 221 SYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNS 280
             ++     +  ++ L  L+     +       +  L+NL  + +LN + +   S  + +
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCC-NLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 281 LLGLHKLECLKLVNESKLSRV-VLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVL 339
                +LE L L   ++L      S +Q    L  L+LS++ L      + + LP LQ L
Sbjct: 396 FKECPQLELLDL-AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 340 KLKQNSYLGRKLACVGS-SSFPKLTVLHL 367
            L+ N +    +    S  +  +L +L L
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 17/222 (7%)

Query: 161 CEKFKYLRLLNLGYAVLDQFPLGLE--NLILLKHLKLNIPSLKCLPSLLCTILNLQT--L 216
           C     LR L+L +   D  P+  E  NL  L  L L+    + L  L    L+L    L
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176

Query: 217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSG 276
           ++ S ++     +   +     L+             + S+  L  +   N  L+  +  
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 277 VSNSLLGLHKLEC------LKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIM 330
              + L             L+ +  +    V L ++ +P  + +L++ N  + +      
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 331 E-----KLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL 367
                  L  L +  +K   +L         S F ++ +  L
Sbjct: 297 FTYSETALKSLMIEHVKNQVFL--FSKEALYSVFAEMNIKML 336

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 17/216 (7%)

Query: 165 KYLRLLNLGYAVLDQFPLGLEN-LILLKHLKLNIPSLKCLPSLLCTIL-NLQTLEMPSS- 221
           K L + ++   V       L +    +    L+I     +  +      +   L    + 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 222 YVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSL 281
           + D   +    +++L  L      L    K  +   KN+  +  L+ +L+  +S   +  
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFK-VALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 282 LGLH-KLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLK 340
                 +  L L + + L+  V      P  +  L L N  +M  P  +   L  LQ L 
Sbjct: 424 CAWAESILVLNL-SSNMLTGSVFRC--LPPKVKVLDLHNNRIMSIPKDV-THLQALQELN 479

Query: 341 LKQNSYLGRKLACVGSSSF---PKLTVLHLKSMYWQ 373
           +  N     +L  V    F     L  + L    W 
Sbjct: 480 VASN-----QLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 38/220 (17%)

Query: 151 HLALIDCENFCEKFKYLRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPSLLCT 209
            +  +   ++   +++L L+N  +       L  L+ L    +   N  S   LPSL   
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL--E 350

Query: 210 ILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPN 269
            L+L                                  +     ++SLK L        +
Sbjct: 351 FLDLS-----------------------RNGLSFKGCCSQSDFGTTSLKYL--------D 379

Query: 270 LS-CYHSGVSNSLLGLHKLECLKLVNESKLSRVV-LSKYQFPLSLSHLSLSNTELMQDPM 327
           LS      +S++ LGL +LE L     S L ++   S +    +L +L +S+T       
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDF-QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 328 PIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL 367
            I   L  L+VLK+  NS           +    LT L L
Sbjct: 439 GIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 38/231 (16%), Positives = 68/231 (29%), Gaps = 25/231 (10%)

Query: 151 HLALIDCENFCEKFKYLRLLNLGYAVLDQFP----LGLENL-ILLKHLKLNIPSLKCLPS 205
            +       +      L  L+L    +          L  + +L   L L++  +  +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 206 LLCTILNLQTLEMPSSYVDHSLED--IWMMQKLMHLN------FGSITLPAPPKNYSSSL 257
                + L  L + +++   ++    I  +  L               L    K+    L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 258 KNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSL 317
            NL         L  Y   + +    L  +    LV+   ++   +  + +     HL L
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS---VTIERVKDFSYNFGWQHLEL 311

Query: 318 SNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGS-SSFPKLTVLHL 367
            N +  Q P     KL  L+ L    N     K     S    P L  L L
Sbjct: 312 VNCKFGQFP---TLKLKSLKRLTFTSN-----KGGNAFSEVDLPSLEFLDL 354

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 32/220 (14%), Positives = 68/220 (30%), Gaps = 19/220 (8%)

Query: 139 LQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIP 198
                +HSS  ++L              L      Y                 + ++   
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 199 SLKCLPSLLCTI-----LNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNY 253
           + + L +    +          LE+ S  +    +  + +  L H+   +  L   P   
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM 123

Query: 254 SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRV--------VLSK 305
                 L  ++     L      +  S+  L++L  L +    +L+ +           +
Sbjct: 124 -QQFAGLETLTLARNPLRA----LPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 306 YQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS 345
           +Q  ++L  L L  T +   P  I   L  L+ LK++ + 
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASI-ANLQNLKSLKIRNSP 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.71
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.68
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.56
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.55
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.53
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.51
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.21
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.2
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.18
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.01
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.97
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	98.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.86
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.77
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.7
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.69
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.54
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.21
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.93
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.8
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.57
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.75

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=6.6e-25  Score=204.37  Aligned_cols=221  Identities=19%  Similarity=0.170  Sum_probs=132.5

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~  212 (397)
                      ....++++|.+.++...     .+ +.+ ..+++|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++
T Consensus        78 ~~~~~l~~L~L~~n~l~-----~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~  151 (328)
T 4fcg_A           78 ATQPGRVALELRSVPLP-----QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR  151 (328)
T ss_dssp             HTSTTCCEEEEESSCCS-----SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred             ccccceeEEEccCCCch-----hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence            34466666666666554     33 233 556666667776666666666666666677777766666666666666667


Q ss_pred             CcEEecCCc-ccccchhhhhc---------cccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhc
Q 045321          213 LQTLEMPSS-YVDHSLEDIWM---------MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLL  282 (397)
Q Consensus       213 L~~L~l~~~-~l~~lp~~~~~---------L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~  282 (397)
                      |++|++++| .+..+|..++.         +++|++|+++ +|....+|..++++++|+.+++++|.+    ..++..++
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~lp~~l~~l~~L~~L~L~~N~l----~~l~~~l~  226 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPL----SALGPAIH  226 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE-EECCCCCCGGGGGCTTCCEEEEESSCC----CCCCGGGG
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc-CCCcCcchHhhcCCCCCCEEEccCCCC----CcCchhhc
Confidence            777777666 55556655543         6666666666 666556666666666666666666654    34445566


Q ss_pred             CCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCC
Q 045321          283 GLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKL  362 (397)
Q Consensus       283 ~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L  362 (397)
                      .+++|+.|++++|.....++-+++. +++|++|++++|.+....+..++.+++|++|+|++|...+. ++.. ...+++|
T Consensus       227 ~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-iP~~-l~~L~~L  303 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR-LPSL-IAQLPAN  303 (328)
T ss_dssp             GCTTCCEEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC-CCGG-GGGSCTT
T ss_pred             cCCCCCEEECcCCcchhhhHHHhcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh-ccHH-HhhccCc
Confidence            6666666666665444444334455 66666666666655444555566666666666654444332 2333 4555555


Q ss_pred             CEEEEe
Q 045321          363 TVLHLK  368 (397)
Q Consensus       363 ~~L~l~  368 (397)
                      +.+.+.
T Consensus       304 ~~l~l~  309 (328)
T 4fcg_A          304 CIILVP  309 (328)
T ss_dssp             CEEECC
T ss_pred             eEEeCC
Confidence            555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=9e-24  Score=201.53  Aligned_cols=260  Identities=19%  Similarity=0.162  Sum_probs=146.0

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~  189 (397)
                      ..+++++.+..+.....+..  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.+..+| ..++++++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            45667777763333333333  55677777777766654     33 333467777777777777776553 44677777


Q ss_pred             CceEecCCCCCcccCccc-cCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCC
Q 045321          190 LKHLKLNIPSLKCLPSLL-CTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALN  267 (397)
Q Consensus       190 L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~  267 (397)
                      |++|++++|.+..+|..+ +++++|++|++++|.+..++. .++.+++|++|+++ ++....++  ++.+++|+.+++++
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~--~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-SNRLTHVD--LSLIPSLFHANVSY  195 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC-SSCCSBCC--GGGCTTCSEEECCS
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC-CCcCCccc--cccccccceeeccc
Confidence            777777777777776653 667777777777776666543 36677777777777 66544442  44555666666555


Q ss_pred             CeeeEEeccHHhhhcCCCCCcEEEeecC----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCcc
Q 045321          268 PNLSCYHSGVSNSLLGLHKLECLKLVNE----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMP  328 (397)
Q Consensus       268 ~~L~i~~~~~~~~l~~l~~L~~L~l~~~----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~  328 (397)
                      |.+.        .+...++|+.|+++++          ++|+.|.+         ++.. +++|++|++++|.+....+.
T Consensus       196 n~l~--------~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          196 NLLS--------TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             SCCS--------EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCEEESG
T ss_pred             cccc--------ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcC-CCCccEEECCCCcCCCcChh
Confidence            5321        1122334444444442          23444433         3334 56666666666665444445


Q ss_pred             ccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccc
Q 045321          329 IMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPC  394 (397)
Q Consensus       329 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C  394 (397)
                      .++.+++|++|++++|...  .++.. ...+++|+.|+++++ .+..++.....+++|+.|++++|
T Consensus       267 ~~~~l~~L~~L~L~~n~l~--~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLV--ALNLY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCC--EEECS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred             HccccccCCEEECCCCcCc--ccCcc-cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence            5666666666666554432  22333 345566666666654 24444333334445555544443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=5.2e-23  Score=193.01  Aligned_cols=259  Identities=18%  Similarity=0.208  Sum_probs=140.9

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH  192 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~  192 (397)
                      ..+++++.+..+...+ ... ..+++|++|.+.++...     .++.+ ..+++|++|++++|.+..+|. +..+++|++
T Consensus        65 ~~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~L~~n~i~-----~~~~~-~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~  136 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKIT-----DISAL-QNLTNLRELYLNEDNISDISP-LANLTKMYS  136 (347)
T ss_dssp             CTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCC-----CCGGG-TTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             cCCccEEEccCCcccc-chhhhcCCcCCEEEccCCccc-----CchHH-cCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence            4455555555222222 222 45555555555555443     22333 555555555555555555444 555555555


Q ss_pred             EecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeE
Q 045321          193 LKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSC  272 (397)
Q Consensus       193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i  272 (397)
                      |++++|.....+..+..+++|++|++++|.+..++. ++.+++|++|+++ +|....++. +..+++|+.+++++|.+  
T Consensus       137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~-~n~l~~~~~-~~~l~~L~~L~l~~n~l--  211 (347)
T 4fmz_A          137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLN-YNQIEDISP-LASLTSLHYFTAYVNQI--  211 (347)
T ss_dssp             EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECT-TSCCCCCGG-GGGCTTCCEEECCSSCC--
T ss_pred             EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEcc-CCccccccc-ccCCCccceeecccCCC--
Confidence            555555322222335555555555555555444444 5555555555555 554444433 44555555555554432  


Q ss_pred             EeccHHhhhcCCCCCcEEEeecC-----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCcccccc
Q 045321          273 YHSGVSNSLLGLHKLECLKLVNE-----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIMEK  332 (397)
Q Consensus       273 ~~~~~~~~l~~l~~L~~L~l~~~-----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~  332 (397)
                        ...+. +..+++|+.|+++++           ++|+.|.+         .+.. +++|++|++++|.+..  .+.+..
T Consensus       212 --~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~l~~n~l~~--~~~~~~  285 (347)
T 4fmz_A          212 --TDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKD-LTKLKMLNVGSNQISD--ISVLNN  285 (347)
T ss_dssp             --CCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTT-CTTCCEEECCSSCCCC--CGGGGG
T ss_pred             --CCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhc-CCCcCEEEccCCccCC--ChhhcC
Confidence              11111 455566666666553           34444444         3444 7777777777777643  255777


Q ss_pred             CcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          333 LPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       333 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      +++|++|++++|....... .. ...+++|+.|++++|+ +..++. ...+|+|+.|++++|+
T Consensus       286 l~~L~~L~L~~n~l~~~~~-~~-l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDM-EV-IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGH-HH-HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred             CCCCCEEECcCCcCCCcCh-hH-hhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence            7788888886665433321 12 3567888888888875 554433 5568888888888875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=4.9e-24  Score=197.21  Aligned_cols=247  Identities=15%  Similarity=0.151  Sum_probs=180.8

Q ss_pred             CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCC-CCcc-cccccccCCCCCceEecCCCCCc-ccCccccCCCCC
Q 045321          137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGY-AVLD-QFPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNL  213 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L  213 (397)
                      .+++.|.+.++...+  ...++..+..+++|++|++++ +.+. .+|..++++++|++|++++|.+. .+|..++++++|
T Consensus        50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            567788887776641  002333448888888888884 6665 77888888888888888888887 788888888888


Q ss_pred             cEEecCCcccc-cchhhhhccccCcEEEecCCCCCC-CCCccccCCC-CCcEEEcCCCeeeEEeccHHhhhcCCCCCcEE
Q 045321          214 QTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSITLPA-PPKNYSSSLK-NLIFISALNPNLSCYHSGVSNSLLGLHKLECL  290 (397)
Q Consensus       214 ~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~-~~p~~i~~l~-~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L  290 (397)
                      ++|++++|.+. .+|..++.+++|++|+++ ++... .+|..++.++ +|+.+++++|.+   ....+..+..++ |+.|
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~~L~~L~L~~N~l---~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDSYGSFSKLFTSMTISRNRL---TGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGGGGCCCTTCCEEECCSSEE---EEECCGGGGGCC-CSEE
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECc-CCcccCcCCHHHhhhhhcCcEEECcCCee---eccCChHHhCCc-ccEE
Confidence            88888888666 678888888888888888 77655 6788888887 888888888876   456677777776 8888


Q ss_pred             EeecCCCeeEE-EeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEec
Q 045321          291 KLVNESKLSRV-VLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKS  369 (397)
Q Consensus       291 ~l~~~~~L~~L-~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~  369 (397)
                      +++++ .+... .-.+.. +++|+.|++++|.+. ..++.+..+++|++|++++|.+.+. ++.. ...+++|+.|++++
T Consensus       203 ~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~-l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          203 DLSRN-MLEGDASVLFGS-DKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRIYGT-LPQG-LTQLKFLHSLNVSF  277 (313)
T ss_dssp             ECCSS-EEEECCGGGCCT-TSCCSEEECCSSEEC-CBGGGCCCCTTCCEEECCSSCCEEC-CCGG-GGGCTTCCEEECCS
T ss_pred             ECcCC-cccCcCCHHHhc-CCCCCEEECCCCcee-eecCcccccCCCCEEECcCCcccCc-CChH-HhcCcCCCEEECcC
Confidence            88874 23322 114566 888889999888874 3444577888999999977766433 2333 56788899999988


Q ss_pred             CCCcCcEEECCCccccccccccccccC
Q 045321          370 MYWQDEWTMGAGAMPKLESLIVNPCAY  396 (397)
Q Consensus       370 ~~~l~~~~~~~~~~p~L~~L~i~~C~~  396 (397)
                      ++--..+|.. +.+++|+.+++.++|.
T Consensus       278 N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          278 NNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             SEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             CcccccCCCC-ccccccChHHhcCCCC
Confidence            6422244443 6788899888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=5.8e-24  Score=197.99  Aligned_cols=219  Identities=21%  Similarity=0.183  Sum_probs=125.8

Q ss_pred             CCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecC
Q 045321          164 FKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGS  243 (397)
Q Consensus       164 l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~  243 (397)
                      ...+++|+++++.++.+|..++++++|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++|++|+++ 
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~-  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR-  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE-
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC-
Confidence            3556666666666666666666666666666666666666666666666666666666555666666666666666666 


Q ss_pred             CC-CCCCCCccccC---------CCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCce
Q 045321          244 IT-LPAPPKNYSSS---------LKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLS  313 (397)
Q Consensus       244 ~~-~~~~~p~~i~~---------l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~  313 (397)
                      +| ....+|..++.         +++|+.+++++|.+    ..++..++.+++|+.|+++++ .+..+.-.+.. +++|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l----~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~-l~~L~  232 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI----RSLPASIANLQNLKSLKIRNS-PLSALGPAIHH-LPKLE  232 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC----CCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGG-CTTCC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCc----CcchHhhcCCCCCCEEEccCC-CCCcCchhhcc-CCCCC
Confidence            43 24445554443         66666666665544    245555666666666666653 23332223444 56666


Q ss_pred             EEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccc
Q 045321          314 HLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIV  391 (397)
Q Consensus       314 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i  391 (397)
                      +|++++|.+....+..++.+++|++|+|++|...+. ++.. ...+++|+.|++++|+.++.+|...+.+++|+.+.+
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~p~~-~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV  308 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB-CCTT-GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh-cchh-hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence            666666655455555566666666666644443322 2222 445666666666666655656555555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=1.3e-23  Score=204.39  Aligned_cols=270  Identities=16%  Similarity=0.122  Sum_probs=185.6

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~  189 (397)
                      +.++++|.+..+......+.  ..+++|++|.+.++....    .+ +..|..+++|++|++++|.+..+ |..++++++
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----eECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            56789999985555554343  889999999999887642    34 44458899999999999998855 778999999


Q ss_pred             CceEecCCCCCcc-cCcc--ccCCCCCcEEecCCcccccc-hhh-hhccccCcEEEecCCCCCCCC-CccccC-------
Q 045321          190 LKHLKLNIPSLKC-LPSL--LCTILNLQTLEMPSSYVDHS-LED-IWMMQKLMHLNFGSITLPAPP-KNYSSS-------  256 (397)
Q Consensus       190 L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~L~~L~~L~l~~~~~~~~~-p~~i~~-------  256 (397)
                      |++|++++|.+.. .|..  ++.+++|++|++++|.+..+ |.. ++++++|++|+++ ++....+ |..++.       
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~~~L~  183 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT-FNKVKSICEEDLLNFQGKHFT  183 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT-TCCBSCCCTTTSGGGTTCEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC-CCcccccChhhhhcccccccc
Confidence            9999999999874 4444  88899999999999987776 544 7899999999998 7754433 333333       


Q ss_pred             ---------------------------CCCCcEEEcCCCeeeEEeccHHhhhcC--------------------------
Q 045321          257 ---------------------------LKNLIFISALNPNLSCYHSGVSNSLLG--------------------------  283 (397)
Q Consensus       257 ---------------------------l~~L~~l~l~~~~L~i~~~~~~~~l~~--------------------------  283 (397)
                                                 +++|+.+++++|.+   ....+..+..                          
T Consensus       184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l---~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  260 (455)
T 3v47_A          184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF---KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN  260 (455)
T ss_dssp             EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC---CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred             ccccccCcccccchhhccccccccccccceeeeEecCCCcc---cccchhhhhccccccceeeEeeccccccccccchhh
Confidence                                       35677788877744   2223332211                          


Q ss_pred             -------------CCCCcEEEeecC-------------CCeeEEEe-----------ccCCCCCCceEEEEecccCCCCC
Q 045321          284 -------------LHKLECLKLVNE-------------SKLSRVVL-----------SKYQFPLSLSHLSLSNTELMQDP  326 (397)
Q Consensus       284 -------------l~~L~~L~l~~~-------------~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~  326 (397)
                                   .++|+.|+++++             ++|+.|.+           ++.. +++|++|++++|.+....
T Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~  339 (455)
T 3v47_A          261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-LTHLLKLNLSQNFLGSID  339 (455)
T ss_dssp             SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCEEC
T ss_pred             hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-cccCCEEECCCCccCCcC
Confidence                         134555554442             34444444           3444 677777777777765555


Q ss_pred             ccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEEC-CCcccccccccccccc
Q 045321          327 MPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMG-AGAMPKLESLIVNPCA  395 (397)
Q Consensus       327 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~p~L~~L~i~~C~  395 (397)
                      +..++.+++|++|+|++|..... .+.. ...+++|+.|+++++ .+.+++.. ...+++|+.|+++++|
T Consensus       340 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          340 SRMFENLDKLEVLDLSYNHIRAL-GDQS-FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             GGGGTTCTTCCEEECCSSCCCEE-CTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhHhcCcccCCEEECCCCccccc-Chhh-ccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            56677778888888866654221 1222 567788888888875 46666543 3567888888887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=5.9e-23  Score=192.63  Aligned_cols=258  Identities=16%  Similarity=0.201  Sum_probs=198.4

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH  192 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~  192 (397)
                      ..+++++.+..+.... .+. ..+++|++|.+.++...     .++. +..+++|++|++++|.+..+| .++++++|++
T Consensus        43 l~~L~~L~l~~~~i~~-~~~~~~~~~L~~L~l~~n~i~-----~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~  114 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQGIEYLTNLEYLNLNGNQIT-----DISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE  114 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCC-----CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             cccccEEEEeCCcccc-chhhhhcCCccEEEccCCccc-----cchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence            6678889888443333 445 78999999999998775     4444 499999999999999998875 6899999999


Q ss_pred             EecCCCCCcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeee
Q 045321          193 LKLNIPSLKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLS  271 (397)
Q Consensus       193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~  271 (397)
                      |++++|.+..+|. +..+++|++|++++| .+..++. +..+++|++|+++ +|....++. ++.+++|+.+++++|.+ 
T Consensus       115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~-~~~~~~~~~-~~~l~~L~~L~l~~n~l-  189 (347)
T 4fmz_A          115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVT-ESKVKDVTP-IANLTDLYSLSLNYNQI-  189 (347)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECC-SSCCCCCGG-GGGCTTCSEEECTTSCC-
T ss_pred             EECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEec-CCCcCCchh-hccCCCCCEEEccCCcc-
Confidence            9999999999877 899999999999999 5555554 8999999999999 888777665 88999999999999865 


Q ss_pred             EEeccHHhhhcCCCCCcEEEeecC-----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCccccc
Q 045321          272 CYHSGVSNSLLGLHKLECLKLVNE-----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIME  331 (397)
Q Consensus       272 i~~~~~~~~l~~l~~L~~L~l~~~-----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~  331 (397)
                         ..++. +..+++|+.|+++++           ++|+.|.+         .+.. +++|++|++++|.+..  ++.+.
T Consensus       190 ---~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~l~~n~l~~--~~~~~  262 (347)
T 4fmz_A          190 ---EDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLAN-LSQLTWLEIGTNQISD--INAVK  262 (347)
T ss_dssp             ---CCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTT-CTTCCEEECCSSCCCC--CGGGT
T ss_pred             ---ccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhc-CCCCCEEECCCCccCC--ChhHh
Confidence               33333 788999999998874           56777776         2344 7788888888887643  35677


Q ss_pred             cCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          332 KLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       332 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      .+++|++|++++|......   . ...+++|+.|++++|+-....+...+.+|+|+.|++++|+
T Consensus       263 ~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          263 DLTKLKMLNVGSNQISDIS---V-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCG---G-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             cCCCcCEEEccCCccCCCh---h-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            7888888888766554431   2 4667888888888875322222233467888888888775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=5.8e-23  Score=201.13  Aligned_cols=269  Identities=17%  Similarity=0.140  Sum_probs=191.8

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~  189 (397)
                      +..++.|.+..+......+.  ..+++|++|.+.++...     .+ +..|.++++|++|++++|.++.+|. .++++++
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  105 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN  105 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence            56788888885554444443  77889999999888765     33 4455888999999999999887775 4688899


Q ss_pred             CceEecCCCCCccc-CccccCCCCCcEEecCCcccccch-hhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcC
Q 045321          190 LKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSL-EDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISAL  266 (397)
Q Consensus       190 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~  266 (397)
                      |++|++++|.+..+ |..+..+++|++|++++|.+..++ ..++.+++|++|+++ ++....+|. .++.+++|+.++++
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE-KCNLTSIPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE-SCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred             CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC-CCcCcccChhHhcccCCCcEEeCC
Confidence            99999999888765 567888999999999998777764 458888999999998 887776665 47888999999888


Q ss_pred             CCeeeEEeccHHhhhcCCCCCcEEEeecCC-------------CeeEEEe-----------ccCCCCCCceEEEEecccC
Q 045321          267 NPNLSCYHSGVSNSLLGLHKLECLKLVNES-------------KLSRVVL-----------SKYQFPLSLSHLSLSNTEL  322 (397)
Q Consensus       267 ~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~-------------~L~~L~l-----------~~~~~l~~L~~L~L~~~~l  322 (397)
                      +|.+   ....+..+..+++|+.|++++++             +|+.|.+           .+.. +++|++|++++|.+
T Consensus       185 ~n~i---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          185 HLNI---NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNPI  260 (477)
T ss_dssp             SCCC---CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT-CTTCCEEECCSSCC
T ss_pred             CCcC---cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC-ccccCeeECCCCcC
Confidence            8765   33344567888889999988764             4555554           2334 66677777777766


Q ss_pred             CCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEEC-CCcccccccccccccc
Q 045321          323 MQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMG-AGAMPKLESLIVNPCA  395 (397)
Q Consensus       323 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~p~L~~L~i~~C~  395 (397)
                      .......+..+++|+.|+|++|...... +.. ...+++|+.|+++++ .+..++.. ...+++|+.|++.++|
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          261 STIEGSMLHELLRLQEIQLVGGQLAVVE-PYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CEECTTSCTTCTTCCEEECCSSCCSEEC-TTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             CccChhhccccccCCEEECCCCccceEC-HHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence            5444455666777777777555443211 112 456777888888775 45555432 3467888888887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=1.8e-22  Score=192.53  Aligned_cols=244  Identities=13%  Similarity=0.111  Sum_probs=202.0

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTI  210 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l  210 (397)
                      ..+++++.+.+.++...     .+ +.+|..+++|++|+++++.+..++ ..++++++|++|++++|.+..+|+ .++++
T Consensus        42 ~~l~~l~~l~l~~~~l~-----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             GGGCCCSEEEEESCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccCCceEEEecCCchh-----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            56799999999998765     55 566699999999999999999776 489999999999999999988754 57999


Q ss_pred             CCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCC-ccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321          211 LNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE  288 (397)
Q Consensus       211 ~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~  288 (397)
                      ++|++|++++|.+..+|.. ++++++|++|+++ ++....++ ..++.+++|+.+++++|.+    ...  .+..+++|+
T Consensus       117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~--~~~~l~~L~  189 (390)
T 3o6n_A          117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRL----THV--DLSLIPSLF  189 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTSSCTTCCEEECCSSCC----SBC--CGGGCTTCS
T ss_pred             CCCCEEECCCCccCcCCHHHhcCCCCCcEEECC-CCccCccChhhccCCCCCCEEECCCCcC----Ccc--ccccccccc
Confidence            9999999999999999987 5899999999999 88776665 4589999999999999865    222  366789999


Q ss_pred             EEEeecC--------CCeeEEEe--------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeE
Q 045321          289 CLKLVNE--------SKLSRVVL--------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLA  352 (397)
Q Consensus       289 ~L~l~~~--------~~L~~L~l--------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~  352 (397)
                      .|+++++        ++|++|.+        .... +++|+.|++++|.+..  .+.++.+++|++|++++|...+. .+
T Consensus       190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~-~~  265 (390)
T 3o6n_A          190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI-MY  265 (390)
T ss_dssp             EEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-ES
T ss_pred             eeecccccccccCCCCcceEEECCCCeeeeccccc-cccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCc-Ch
Confidence            9999874        46777776        1122 6789999999998754  46789999999999987765432 22


Q ss_pred             EeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          353 CVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       353 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      .. ...+++|+.|+++++ .+..++.....+|+|+.|++++|+
T Consensus       266 ~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          266 HP-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             GG-GTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred             hH-ccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc
Confidence            33 678999999999996 588888777889999999999884

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=3.1e-23  Score=208.64  Aligned_cols=259  Identities=18%  Similarity=0.154  Sum_probs=134.3

Q ss_pred             CCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCCC
Q 045321          115 ANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILL  190 (397)
Q Consensus       115 ~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L  190 (397)
                      .+++.+.+..+.....+..  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.+..+|+ .++++++|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-----CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            4455555552223332322  44566666666665543     22 2233566666666666666654443 34566666


Q ss_pred             ceEecCCCCCcccCccc-cCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCC
Q 045321          191 KHLKLNIPSLKCLPSLL-CTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNP  268 (397)
Q Consensus       191 ~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~  268 (397)
                      ++|++++|.+..+|..+ +++++|++|++++|.+..+|+ .++.+++|++|+++ ++....++  ++.+++|+.+++++|
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~--~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-SNRLTHVD--LSLIPSLFHANVSYN  202 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT-TSCCSBCC--GGGCTTCSEEECCSS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc-CCCCCCcC--hhhhhhhhhhhcccC
Confidence            66666666666665543 566666666666665555443 35666666666666 55444432  344555555555544


Q ss_pred             eeeEEeccHHhhhcCCCCCcEEEeecC----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCccc
Q 045321          269 NLSCYHSGVSNSLLGLHKLECLKLVNE----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPI  329 (397)
Q Consensus       269 ~L~i~~~~~~~~l~~l~~L~~L~l~~~----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~  329 (397)
                      .+        ..+....+|+.|+++++          ++|+.|.+         ++.. +++|+.|++++|.+....+..
T Consensus       203 ~l--------~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          203 LL--------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             CC--------SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCEEESGG
T ss_pred             cc--------ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhcc-CCCCCEEECCCCccCCCCHHH
Confidence            22        11223334455554442          23444443         3344 666666666666655444555


Q ss_pred             cccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccc
Q 045321          330 MEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPC  394 (397)
Q Consensus       330 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C  394 (397)
                      ++.+++|+.|+|++|...+  ++.. ...+++|+.|+++++. +..++...+.+|+|+.|++++|
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~--l~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVA--LNLY-GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCE--EECS-SSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSS
T ss_pred             hcCccCCCEEECCCCCCCC--CCcc-cccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCC
Confidence            6666666666665554422  3333 4456666666666543 3444333334445555554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=3.4e-23  Score=214.31  Aligned_cols=151  Identities=13%  Similarity=0.105  Sum_probs=108.4

Q ss_pred             CCCeEEEEEEeCccch------------------hhcc-C--CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEc
Q 045321          114 LANVKRCFILEDLIEF------------------IFLE-Q--SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNL  172 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~------------------~~~~-~--~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l  172 (397)
                      ..+++.|.+..+....                  .+.. .  .+++|+.|.+.++...+    .++..+.+++.|++|++
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEEC
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEEC
Confidence            5678888888554443                  3333 5  78888888888876543    44444477788888888


Q ss_pred             CCCC-cc--cccccccCCC-------CCceEecCCCCCcccCc--cccCCCCCcEEecCCcccccchhhhhccccCcEEE
Q 045321          173 GYAV-LD--QFPLGLENLI-------LLKHLKLNIPSLKCLPS--LLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLN  240 (397)
Q Consensus       173 ~~~~-i~--~lp~~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~  240 (397)
                      ++|. ++  .+|..++++.       +|++|++++|.+..+|.  .++++++|++|++++|.+..+| .++.+++|+.|+
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence            8886 66  3676666554       77888888777777777  7777778888888777666777 677777777777


Q ss_pred             ecCCCCCCCCCccccCCCC-CcEEEcCCCee
Q 045321          241 FGSITLPAPPKNYSSSLKN-LIFISALNPNL  270 (397)
Q Consensus       241 l~~~~~~~~~p~~i~~l~~-L~~l~l~~~~L  270 (397)
                      ++ ++....+|..++.+++ |+.|++++|.+
T Consensus       602 Ls-~N~l~~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          602 LD-YNQIEEIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CC-SSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred             Cc-CCccccchHHHhhccccCCEEECcCCCC
Confidence            77 7766677777777777 77777777754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=1.1e-22  Score=205.04  Aligned_cols=124  Identities=15%  Similarity=0.132  Sum_probs=63.9

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~  189 (397)
                      +..++++.+..+.....+..  ..+++|++|.+.++...     .+ +..|.++++|++|++++|.+..+ |..++++++
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-----ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence            34555555553333333332  45566666666655443     22 33335555555555555555544 455555555


Q ss_pred             CceEecCCCCCcccC-ccccCCCCCcEEecCCcccc--cchhhhhccccCcEEEec
Q 045321          190 LKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVD--HSLEDIWMMQKLMHLNFG  242 (397)
Q Consensus       190 L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~L~~L~~L~l~  242 (397)
                      |++|++++|.+..+| ..++++++|++|++++|.+.  .+|..++++++|++|+++
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls  161 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS  161 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence            555555555555444 34555555555555555443  245555555555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=2.8e-23  Score=210.22  Aligned_cols=152  Identities=13%  Similarity=0.114  Sum_probs=120.7

Q ss_pred             CCCeEEEEEEeCccch-hhcc-CCCCCeeEEEEeCCC-CccccccchhHHhcCC------CeeEEEEcCCCCcccccc--
Q 045321          114 LANVKRCFILEDLIEF-IFLE-QSGMYLQSFLNHSSE-SDHLALIDCENFCEKF------KYLRLLNLGYAVLDQFPL--  182 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~-~~~~-~~~~~Lr~L~~~~~~-~~~~~~~~l~~~~~~l------~~Lr~L~l~~~~i~~lp~--  182 (397)
                      ..+++++.+..+.... .+.. ..+++|++|.+.++. ..+   ..++.-+..+      +.|++|++++|.++.+|.  
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~---~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~  324 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG---EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET  324 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH---HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc---ccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence            5689999999555333 3334 889999999999997 531   0233333444      899999999999999998  


Q ss_pred             cccCCCCCceEecCCCCCc-ccCccccCCCCCcEEecCCcccccchhhhhcccc-CcEEEecCCCCCCCCCccccCCC--
Q 045321          183 GLENLILLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQK-LMHLNFGSITLPAPPKNYSSSLK--  258 (397)
Q Consensus       183 ~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~-L~~L~l~~~~~~~~~p~~i~~l~--  258 (397)
                      .++++++|++|++++|.+. .+| .++.+++|++|++++|.+..+|..++.+++ |++|+++ ++....+|..++.++  
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls-~N~l~~lp~~~~~~~l~  402 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA-HNKLKYIPNIFDAKSVS  402 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC-SSCCSSCCSCCCTTCSS
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc-CCcCcccchhhhhcccC
Confidence            8999999999999999988 898 888999999999999988889988999998 9999998 887778887776654  


Q ss_pred             CCcEEEcCCCee
Q 045321          259 NLIFISALNPNL  270 (397)
Q Consensus       259 ~L~~l~l~~~~L  270 (397)
                      +|+.+++++|.+
T Consensus       403 ~L~~L~Ls~N~l  414 (636)
T 4eco_A          403 VMSAIDFSYNEI  414 (636)
T ss_dssp             CEEEEECCSSCT
T ss_pred             ccCEEECcCCcC
Confidence            677777776644

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=2.6e-23  Score=210.52  Aligned_cols=171  Identities=12%  Similarity=0.092  Sum_probs=142.6

Q ss_pred             CCCeEEEEEEeCccch------------------hhcc-C--CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEc
Q 045321          114 LANVKRCFILEDLIEF------------------IFLE-Q--SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNL  172 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~------------------~~~~-~--~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l  172 (397)
                      ..+++.|.+..+....                  .+.. .  .+++|++|.+.++...+    .++..+.+++.|++|++
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLINV  280 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEEC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEEC
Confidence            6789999999655444                  4444 6  89999999999998653    55555599999999999


Q ss_pred             CCCC-cc--cccccccCC------CCCceEecCCCCCcccCc--cccCCCCCcEEecCCcccc-cchhhhhccccCcEEE
Q 045321          173 GYAV-LD--QFPLGLENL------ILLKHLKLNIPSLKCLPS--LLCTILNLQTLEMPSSYVD-HSLEDIWMMQKLMHLN  240 (397)
Q Consensus       173 ~~~~-i~--~lp~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~  240 (397)
                      ++|. ++  .+|..++++      ++|++|++++|.+..+|.  .++++++|++|++++|.+. .+| .++.+++|++|+
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~  359 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN  359 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence            9998 88  489888887      999999999999999999  9999999999999999888 899 899999999999


Q ss_pred             ecCCCCCCCCCccccCCCC-CcEEEcCCCeeeEEeccHHhhhcCCC--CCcEEEeec
Q 045321          241 FGSITLPAPPKNYSSSLKN-LIFISALNPNLSCYHSGVSNSLLGLH--KLECLKLVN  294 (397)
Q Consensus       241 l~~~~~~~~~p~~i~~l~~-L~~l~l~~~~L~i~~~~~~~~l~~l~--~L~~L~l~~  294 (397)
                      ++ ++....+|..++.+++ |+.+++++|.+    ..+|..+..++  +|+.|++++
T Consensus       360 L~-~N~l~~lp~~l~~l~~~L~~L~Ls~N~l----~~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          360 LA-YNQITEIPANFCGFTEQVENLSFAHNKL----KYIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             CC-SSEEEECCTTSEEECTTCCEEECCSSCC----SSCCSCCCTTCSSCEEEEECCS
T ss_pred             CC-CCccccccHhhhhhcccCcEEEccCCcC----cccchhhhhcccCccCEEECcC
Confidence            99 8887799999999999 99999999865    24455444433  555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=9.8e-23  Score=210.74  Aligned_cols=249  Identities=18%  Similarity=0.131  Sum_probs=183.6

Q ss_pred             CCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCCCCceEecCCCCCc-ccCccccCCCCC
Q 045321          136 GMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNL  213 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L  213 (397)
                      +++|+.|.+.++...+    .++..+..++.|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|
T Consensus       393 ~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  468 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL  468 (768)
T ss_dssp             TCCCCEEECCSSEEEE----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             cCCccEEECCCCcccc----ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence            5667777777776542    33444488888888888888877 67888888888888888888876 788888888888


Q ss_pred             cEEecCCcccc-cchhhhhccccCcEEEecCCCCCC-CCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEE
Q 045321          214 QTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSITLPA-PPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLK  291 (397)
Q Consensus       214 ~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~  291 (397)
                      ++|++++|.+. .+|..++++++|++|+++ +|... .+|..++.+++|+.+++++|.+   ...+|..++.+++|+.|+
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~L~~N~l---~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLS-NNRLTGEIPKWIGRLENLAILKLSNNSF---SGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECC-SSCCCSCCCGGGGGCTTCCEEECCSSCC---EEECCGGGGGCTTCCEEE
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEcc-CCccCCcCChHHhcCCCCCEEECCCCcc---cCcCCHHHcCCCCCCEEE
Confidence            88888888655 678888888888888888 77654 6788888888888888888876   466778888888888888


Q ss_pred             eecCCC-------------eeE-----------------------------------------------------EEe--
Q 045321          292 LVNESK-------------LSR-----------------------------------------------------VVL--  303 (397)
Q Consensus       292 l~~~~~-------------L~~-----------------------------------------------------L~l--  303 (397)
                      +++++-             +..                                                     +.-  
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            876410             000                                                     000  


Q ss_pred             --ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCC
Q 045321          304 --SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAG  381 (397)
Q Consensus       304 --~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  381 (397)
                        .++. +++|+.|++++|.+....+..++.+++|+.|+|++|...+.. +.. .+.+++|+.|+++++.--..+|...+
T Consensus       625 ~~~~~~-l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~-l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          625 SPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDE-VGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             CCSCSS-SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-CGG-GGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             chhhhc-cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-ChH-HhCCCCCCEEECCCCcccCcCChHHh
Confidence              1233 567888888888877677777888888888888777765543 333 56778888888887654345566666


Q ss_pred             cccccccccccccc
Q 045321          382 AMPKLESLIVNPCA  395 (397)
Q Consensus       382 ~~p~L~~L~i~~C~  395 (397)
                      .+++|+.|++++|+
T Consensus       702 ~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          702 ALTMLTEIDLSNNN  715 (768)
T ss_dssp             GCCCCSEEECCSSE
T ss_pred             CCCCCCEEECcCCc
Confidence            77778888777663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=2.9e-22  Score=201.92  Aligned_cols=135  Identities=17%  Similarity=0.129  Sum_probs=67.6

Q ss_pred             hhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC--------------
Q 045321          230 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE--------------  295 (397)
Q Consensus       230 ~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~--------------  295 (397)
                      ++.+++|++|+++ ++....+|.+++.+++|+.+++++|.+   ....+..+..+++|+.|+++++              
T Consensus       274 ~~~l~~L~~L~l~-~n~l~~lp~~l~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          274 FHCFSGLQELDLT-ATHLSELPSGLVGLSTLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TTTCTTCSEEECT-TSCCSCCCSSCCSCTTCCEEECTTCCC---SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             hccccCCCEEecc-CCccCCCChhhcccccCCEEECccCCc---CcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence            3445556666666 555556666666666666666666644   2333445555566666655542              


Q ss_pred             CCeeEEEe-------------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCC
Q 045321          296 SKLSRVVL-------------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKL  362 (397)
Q Consensus       296 ~~L~~L~l-------------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L  362 (397)
                      ++|+.|.+             .+.. +++|++|++++|.+....+..++.+++|++|++++|...+...... ...+++|
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L  427 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRN-LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP-FQNLHLL  427 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTT-CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT-TTTCTTC
T ss_pred             CcCCEEECCCCccccccCcchhccc-CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh-hhCcccC
Confidence            23444443             1223 5555555555555433334445555555555554444332211111 2334444


Q ss_pred             CEEEEecC
Q 045321          363 TVLHLKSM  370 (397)
Q Consensus       363 ~~L~l~~~  370 (397)
                      +.|+++++
T Consensus       428 ~~L~l~~n  435 (606)
T 3t6q_A          428 KVLNLSHS  435 (606)
T ss_dssp             CEEECTTC
T ss_pred             CEEECCCC
Confidence            44444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=2.5e-23  Score=192.42  Aligned_cols=245  Identities=13%  Similarity=0.073  Sum_probs=202.1

Q ss_pred             CCeEEEEEEeCccch---hhcc-CCCCCeeEEEEeC-CCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCC
Q 045321          115 ANVKRCFILEDLIEF---IFLE-QSGMYLQSFLNHS-SESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLI  188 (397)
Q Consensus       115 ~~~r~L~l~~~~~~~---~~~~-~~~~~Lr~L~~~~-~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~  188 (397)
                      .+++++.+..+....   .+.. ..+++|++|.+.+ +....    .++..|..+++|++|++++|.+. .+|..+++++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            689999999555443   3344 8899999999995 65542    44444599999999999999998 8899999999


Q ss_pred             CCceEecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhhhhccc-cCcEEEecCCCCCC-CCCccccCCCCCcEEE
Q 045321          189 LLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLEDIWMMQ-KLMHLNFGSITLPA-PPKNYSSSLKNLIFIS  264 (397)
Q Consensus       189 ~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~-~L~~L~l~~~~~~~-~~p~~i~~l~~L~~l~  264 (397)
                      +|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.++ +|++|+++ ++... .+|..++.++ |+.++
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLN-LAFVD  203 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCC-CSEEE
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CCeeeccCChHHhCCc-ccEEE
Confidence            9999999999988 79999999999999999999877 8899999998 99999999 87654 6788899997 99999


Q ss_pred             cCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecc
Q 045321          265 ALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQN  344 (397)
Q Consensus       265 l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~  344 (397)
                      +++|.+   ....+..+..+++|+.|+++++ .+....-.+.. +++|++|++++|.+....+..++.+++|++|++++|
T Consensus       204 Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          204 LSRNML---EGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCSSEE---EECCGGGCCTTSCCSEEECCSS-EECCBGGGCCC-CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             CcCCcc---cCcCCHHHhcCCCCCEEECCCC-ceeeecCcccc-cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            999977   5667888999999999999984 22211113445 899999999999987677888999999999999888


Q ss_pred             cccCceeEEeCCCCCCCCCEEEEecCCCc
Q 045321          345 SYLGRKLACVGSSSFPKLTVLHLKSMYWQ  373 (397)
Q Consensus       345 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  373 (397)
                      .+.+.. + . ...+++|+.|++.+++.+
T Consensus       279 ~l~~~i-p-~-~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          279 NLCGEI-P-Q-GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             EEEEEC-C-C-STTGGGSCGGGTCSSSEE
T ss_pred             cccccC-C-C-CccccccChHHhcCCCCc
Confidence            765432 2 2 367899999999987644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=1.9e-22  Score=208.53  Aligned_cols=274  Identities=18%  Similarity=0.135  Sum_probs=143.0

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc--------------
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD--------------  178 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~--------------  178 (397)
                      ..+++++.+..+.....++. ..+++|++|.+.++...+    .++..+..+++|++|++++|.+.              
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L  274 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG----DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL  274 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS----CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred             CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC----cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence            34455555553332222333 455555555555555432    22333355555555555554433              


Q ss_pred             ---------cccccccCC-CCCceEecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhh-hhccccCcEEEecCCC
Q 045321          179 ---------QFPLGLENL-ILLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLED-IWMMQKLMHLNFGSIT  245 (397)
Q Consensus       179 ---------~lp~~~~~l-~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~-~~~L~~L~~L~l~~~~  245 (397)
                               .+|..++.. ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|++|+++ +|
T Consensus       275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls-~n  353 (768)
T 3rgz_A          275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS-FN  353 (768)
T ss_dssp             ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC-SS
T ss_pred             ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc-CC
Confidence                     344444443 55555555555554 45555666666666666666443 55544 5666666666665 55


Q ss_pred             CCC-CCCccccCCC-CCcEEEcCCCeeeEE-----------------------eccHHhhhcCCCCCcEEEeecC-----
Q 045321          246 LPA-PPKNYSSSLK-NLIFISALNPNLSCY-----------------------HSGVSNSLLGLHKLECLKLVNE-----  295 (397)
Q Consensus       246 ~~~-~~p~~i~~l~-~L~~l~l~~~~L~i~-----------------------~~~~~~~l~~l~~L~~L~l~~~-----  295 (397)
                      ... .+|..+++++ +|+.+++++|.+.-.                       ...++..++.+++|+.|+++++     
T Consensus       354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  433 (768)
T 3rgz_A          354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT  433 (768)
T ss_dssp             EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence            432 4444444443 444444444322100                       2344555666666666666553     


Q ss_pred             --------CCeeEEEe-----------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCC
Q 045321          296 --------SKLSRVVL-----------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGS  356 (397)
Q Consensus       296 --------~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~  356 (397)
                              ++|+.|.+           .+.. +++|++|++++|.+....+..++.+++|++|+|++|...+. ++.. .
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~-~  510 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKW-I  510 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGG-G
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChH-H
Confidence                    34555554           1223 55666666666666555555666666666666655554333 2222 4


Q ss_pred             CCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          357 SSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       357 ~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      +.+++|+.|++++|.-...+|...+.+++|+.|++++|+
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            556677777777665333455555566777777776653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=9.4e-22  Score=198.21  Aligned_cols=226  Identities=18%  Similarity=0.154  Sum_probs=166.7

Q ss_pred             eeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecC
Q 045321          166 YLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGS  243 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~  243 (397)
                      .|++|+++++.+..++. .++++++|++|++++|.+.++|..++.+++|++|++++|.+..+ |..++.+++|++|+++ 
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK-  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC-
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC-
Confidence            56666666666665543 37788899999999999989998899999999999999977776 4468889999999998 


Q ss_pred             CCCCC-CCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC-------------CCeeEEEe-----
Q 045321          244 ITLPA-PPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE-------------SKLSRVVL-----  303 (397)
Q Consensus       244 ~~~~~-~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~-------------~~L~~L~l-----  303 (397)
                      ++... .+|.. ++.+++|+.+++++|.+.- ....+..+..+++|+.|+++++             ++|+.|.+     
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCcccc-ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            77533 55544 7888899999888875521 1112566778888888888764             46777766     


Q ss_pred             -------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEE-eCCCCCCCCCEEEEecCCCcCc
Q 045321          304 -------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLAC-VGSSSFPKLTVLHLKSMYWQDE  375 (397)
Q Consensus       304 -------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~  375 (397)
                             ++.. +++|+.|++++|.+....+..++.+++|++|++++|.+.+..++. .....+++|+.|++++|. +..
T Consensus       413 ~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~  490 (606)
T 3t6q_A          413 KVKDAQSPFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSS  490 (606)
T ss_dssp             ECCTTCCTTTT-CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCE
T ss_pred             CCcccchhhhC-cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCc
Confidence                   2445 788999999999876666777888999999999777765543321 115678888999988874 555


Q ss_pred             E-EECCCcccccccccccccc
Q 045321          376 W-TMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       376 ~-~~~~~~~p~L~~L~i~~C~  395 (397)
                      + +...+.+++|+.|++++|.
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSC
T ss_pred             cChhhhccccCCCEEECCCCc
Confidence            5 3445677888888888763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=3.1e-22  Score=207.18  Aligned_cols=271  Identities=14%  Similarity=0.080  Sum_probs=178.0

Q ss_pred             CCCeEEEEEEeCccc-hhhcc-CCCCCeeEEEEeCCC-CccccccchhHH-------hcCCCeeEEEEcCCCCcccccc-
Q 045321          114 LANVKRCFILEDLIE-FIFLE-QSGMYLQSFLNHSSE-SDHLALIDCENF-------CEKFKYLRLLNLGYAVLDQFPL-  182 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~-~~~~~-~~~~~Lr~L~~~~~~-~~~~~~~~l~~~-------~~~l~~Lr~L~l~~~~i~~lp~-  182 (397)
                      ..+++.|.+..+... ..+.. ..+++|+.|.+.++. ..+   ..++.-       +..+++|++|++++|.+..+|. 
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg---~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~  566 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA---AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS  566 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH---HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc---ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence            578999999955433 33434 889999999999997 531   012222       2455599999999999999998 


Q ss_pred             -cccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhcccc-CcEEEecCCCCCCCCCccccCCCC-
Q 045321          183 -GLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQK-LMHLNFGSITLPAPPKNYSSSLKN-  259 (397)
Q Consensus       183 -~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~-L~~L~l~~~~~~~~~p~~i~~l~~-  259 (397)
                       .++++++|++|++++|.+..+| .++.+++|++|++++|.+..+|..+..+++ |+.|+++ +|....+|..++.++. 
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls-~N~L~~lp~~~~~~~~~  644 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS-HNKLKYIPNIFNAKSVY  644 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC-SSCCCSCCSCCCTTCSS
T ss_pred             hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECc-CCCCCcCchhhhccccC
Confidence             8999999999999999999998 899999999999999988899998999998 9999999 8877788877766543 


Q ss_pred             -CcEEEcCCCeee-----------------EE--------eccHHhhh-cCCCCCcEEEeecCC----------------
Q 045321          260 -LIFISALNPNLS-----------------CY--------HSGVSNSL-LGLHKLECLKLVNES----------------  296 (397)
Q Consensus       260 -L~~l~l~~~~L~-----------------i~--------~~~~~~~l-~~l~~L~~L~l~~~~----------------  296 (397)
                       |+.+++++|.+.                 +.        ...++..+ ..+++|+.|+++++.                
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l  724 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY  724 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence             777777665330                 00        11233333 355666666666530                


Q ss_pred             ----CeeEEEe----------ccC--CCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc-----ccCceeEEeC
Q 045321          297 ----KLSRVVL----------SKY--QFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS-----YLGRKLACVG  355 (397)
Q Consensus       297 ----~L~~L~l----------~~~--~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~-----~~~~~~~~~~  355 (397)
                          +|+.|.+          .+.  . +++|+.|+|++|.+.. .+..++.+++|+.|+|++|.     .....++.. 
T Consensus       725 ~nl~~L~~L~Ls~N~L~~lp~~l~~~~-l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-  801 (876)
T 4ecn_A          725 KNTYLLTTIDLRFNKLTSLSDDFRATT-LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-  801 (876)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGSTTT-CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-
T ss_pred             cccCCccEEECCCCCCccchHHhhhcc-CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH-
Confidence                4444544          122  3 5556666666655533 34445555666666664321     101112222 


Q ss_pred             CCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          356 SSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       356 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      ...+++|+.|++++|. +..+|..  .+++|+.|++++|+
T Consensus       802 l~~L~~L~~L~Ls~N~-L~~Ip~~--l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          802 ITTCPSLIQLQIGSND-IRKVDEK--LTPQLYILDIADNP  838 (876)
T ss_dssp             GGGCSSCCEEECCSSC-CCBCCSC--CCSSSCEEECCSCT
T ss_pred             HhcCCCCCEEECCCCC-CCccCHh--hcCCCCEEECCCCC
Confidence            3456666666666653 3555433  23567777776665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1e-21  Score=197.46  Aligned_cols=245  Identities=13%  Similarity=0.114  Sum_probs=202.6

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCcc-ccCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSL-LCTI  210 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l  210 (397)
                      ..+++++.+.+.++...     .+ +.+|..+++|++|++++|.+..+| ..++.+++|++|++++|.+..+|+. ++++
T Consensus        48 l~l~~l~~l~l~~~~l~-----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             GGGCCCSEEEESSCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCCCceEEEeeCCCCC-----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            56789999999988765     55 666799999999999999999765 4899999999999999999987754 6999


Q ss_pred             CCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321          211 LNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE  288 (397)
Q Consensus       211 ~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~  288 (397)
                      ++|++|++++|.+..+|.. ++.+++|++|+++ +|....+++ .++.+++|+.|++++|.+    ..+  .++.+++|+
T Consensus       123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~--~~~~l~~L~  195 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRL----THV--DLSLIPSLF  195 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEEECTTSCC----SBC--CGGGCTTCS
T ss_pred             CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee-CCcCCCCChhhhhcCCcCcEEECcCCCC----CCc--Chhhhhhhh
Confidence            9999999999999999987 5899999999999 887666654 699999999999999866    222  356789999


Q ss_pred             EEEeecC--------CCeeEEEec-------cCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEE
Q 045321          289 CLKLVNE--------SKLSRVVLS-------KYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLAC  353 (397)
Q Consensus       289 ~L~l~~~--------~~L~~L~l~-------~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~  353 (397)
                      .|+++++        ++|+.|.+.       .+..+++|+.|++++|.+..  ++.++.+++|+.|+|++|.+.+. .+.
T Consensus       196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~-~~~  272 (597)
T 3oja_B          196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI-MYH  272 (597)
T ss_dssp             EEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-ESG
T ss_pred             hhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC-CHH
Confidence            9999874        467777761       11126789999999998743  47799999999999987766433 233


Q ss_pred             eCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          354 VGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       354 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      . ...+++|+.|+++++ .+..++...+.+|+|+.|++++|+
T Consensus       273 ~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          273 P-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             G-GTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred             H-hcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC
Confidence            3 678999999999986 588888888889999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=9.9e-22  Score=196.47  Aligned_cols=114  Identities=23%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             HhhhcCCCCCcEEEeecC------------CCeeEEEe------------ccCCCCCCceEEEEecccCCCCCccccccC
Q 045321          278 SNSLLGLHKLECLKLVNE------------SKLSRVVL------------SKYQFPLSLSHLSLSNTELMQDPMPIMEKL  333 (397)
Q Consensus       278 ~~~l~~l~~L~~L~l~~~------------~~L~~L~l------------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l  333 (397)
                      +..+..+++|+.|+++++            ++|+.|.+            .+.. +++|++|++++|.+....+..++.+
T Consensus       366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l  444 (570)
T 2z63_A          366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGL  444 (570)
T ss_dssp             EHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT-CTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             cccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc-CCCCCEEeCcCCcccccchhhhhcC
Confidence            345556666666666653            45555554            1233 6677777777776655555566677


Q ss_pred             cCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcE-EECCCccccccccccccc
Q 045321          334 PRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEW-TMGAGAMPKLESLIVNPC  394 (397)
Q Consensus       334 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~p~L~~L~i~~C  394 (397)
                      ++|++|++++|......++.. ...+++|+.|++++|. +..+ +.....+++|+.|++++|
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC
Confidence            777777776655543333433 5566666666666653 3333 223344555555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=205.09  Aligned_cols=149  Identities=17%  Similarity=0.159  Sum_probs=113.2

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~  189 (397)
                      +..+++|.+..+......+.  ..+++|++|.+.++....    .+ +..|.++++|++|++++|.+..+ |..++++.+
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            67899999996555554444  889999999999985432    45 55559999999999999998855 788999999


Q ss_pred             CceEecCCCCCcc-cCcc--ccCCCCCcEEecCCcccccch--hhhhccccCcEEEecCCCCCCC-CCccccCC--CCCc
Q 045321          190 LKHLKLNIPSLKC-LPSL--LCTILNLQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAP-PKNYSSSL--KNLI  261 (397)
Q Consensus       190 L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~-~p~~i~~l--~~L~  261 (397)
                      |++|++++|.+.. +|..  ++++++|++|++++|.+..++  ..++++++|++|+++ ++.... .|..++.+  ++|+
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls-~N~i~~~~~~~l~~l~~~~L~  177 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCEHELEPLQGKTLS  177 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE-SSCCCCCCSGGGHHHHHCSSC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC-CCcCCeeCHHHcccccCCccc
Confidence            9999999999875 5655  889999999999999776653  568999999999998 765432 33344433  3444


Q ss_pred             EEEcCC
Q 045321          262 FISALN  267 (397)
Q Consensus       262 ~l~l~~  267 (397)
                      .+++++
T Consensus       178 ~L~L~~  183 (844)
T 3j0a_A          178 FFSLAA  183 (844)
T ss_dssp             CCEECC
T ss_pred             eEECCC
Confidence            444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=1.7e-21  Score=181.48  Aligned_cols=264  Identities=14%  Similarity=0.064  Sum_probs=169.9

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL  190 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L  190 (397)
                      ...++.+.+..+........  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.++.+|..+.  ++|
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L  123 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-----KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL  123 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-----eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence            44566777664444443332  66777777777776654     23 4444777777777777777777766554  577


Q ss_pred             ceEecCCCCCcccCc-cccCCCCCcEEecCCcccc---cchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcC
Q 045321          191 KHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVD---HSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL  266 (397)
Q Consensus       191 ~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~---~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~  266 (397)
                      ++|++++|.+..+|. .+.++++|++|++++|.+.   ..|..+..+++|++|+++ ++....+|..+.  ++|+.++++
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~-~n~l~~l~~~~~--~~L~~L~l~  200 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNITTIPQGLP--PSLTELHLD  200 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-SSCCCSCCSSCC--TTCSEEECT
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC-CCccccCCcccc--ccCCEEECC
Confidence            777777777766654 3667777777777777544   345557777777777777 776666766554  677778887


Q ss_pred             CCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321          267 NPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS  345 (397)
Q Consensus       267 ~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~  345 (397)
                      +|.+   ....+..+..+++|+.|+++++ .++.+.. ++.. +++|++|++++|.+. ..+..+..+++|++|++++|.
T Consensus       201 ~n~l---~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          201 GNKI---TKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             TSCC---CEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGG-STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred             CCcC---CccCHHHhcCCCCCCEEECCCC-cCceeChhhccC-CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence            7765   3444567778888888888773 4555432 4555 788999999998874 455667888899999997776


Q ss_pred             ccCceeEEe----CCCCCCCCCEEEEecCCCcCcEEEC---CCccccccccccccc
Q 045321          346 YLGRKLACV----GSSSFPKLTVLHLKSMYWQDEWTMG---AGAMPKLESLIVNPC  394 (397)
Q Consensus       346 ~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~p~L~~L~i~~C  394 (397)
                      +........    .....+.|+.|++.+++ +..+...   ...+++++.++++++
T Consensus       275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             CCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence            544321100    01134778888888866 4433222   234566777777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.87  E-value=3e-21  Score=188.42  Aligned_cols=103  Identities=17%  Similarity=0.059  Sum_probs=52.1

Q ss_pred             CCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceE
Q 045321          115 ANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHL  193 (397)
Q Consensus       115 ~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L  193 (397)
                      ..++.+.+..+.. ...+. ..+++|++|.+.++...     .++. +..+++|++|++++|.+..++. ++++++|++|
T Consensus        46 ~~l~~L~l~~~~i-~~l~~~~~l~~L~~L~Ls~n~l~-----~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNNQLT-----DITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECCSSCC-CCCTTGGGCTTCCEEECCSSCCC-----CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             ccccEEecCCCCC-ccCcchhhhcCCCEEECCCCccC-----Cchh-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence            3455555542222 22223 44555666666555543     2222 2555555555555555555444 5555555555


Q ss_pred             ecCCCCCcccCccccCCCCCcEEecCCcccccc
Q 045321          194 KLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS  226 (397)
Q Consensus       194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l  226 (397)
                      ++++|.+..+|. ++++++|++|++++|.+..+
T Consensus       118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~  149 (466)
T 1o6v_A          118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDI  149 (466)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCC
T ss_pred             ECCCCCCCCChH-HcCCCCCCEEECCCCccCCC
Confidence            555555555543 55555555555555544443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=5.3e-21  Score=185.80  Aligned_cols=205  Identities=14%  Similarity=0.103  Sum_probs=150.5

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH  192 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~  192 (397)
                      ..+++++.+..+.... .+. ..+++|++|.+.++....     ++ + ..+++|++|++++|.++.+|  ++++++|++
T Consensus        41 l~~L~~L~Ls~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~-----~~-~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNNITT-----LD-L-SQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             HTTCCEEECCSSCCCC-CTTGGGCTTCSEEECCSSCCSC-----CC-C-TTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             cCCCCEEEccCCCccc-ChhhcccCCCCEEEccCCcCCe-----Ec-c-ccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            5678888888444444 335 778899999999887763     22 3 88889999999999988775  888999999


Q ss_pred             EecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCC-CCCCCccccCCCCCcEEEcCCCeee
Q 045321          193 LKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITL-PAPPKNYSSSLKNLIFISALNPNLS  271 (397)
Q Consensus       193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~l~l~~~~L~  271 (397)
                      |++++|.++.+|  ++.+++|++|++++|.+..+|  ++.+++|++|+++ +|. ...+  .++.+++|+.+++++|.+ 
T Consensus       111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~-~n~~~~~~--~~~~l~~L~~L~ls~n~l-  182 (457)
T 3bz5_A          111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH-LNKKITKL--DVTPQTQLTTLDCSFNKI-  182 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECT-TCSCCCCC--CCTTCTTCCEEECCSSCC-
T ss_pred             EECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECC-CCCccccc--ccccCCcCCEEECCCCcc-
Confidence            999999988886  888999999999999887775  7888999999998 773 4444  578889999999998865 


Q ss_pred             EEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321          272 CYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       272 i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                         ..++  +..+++|+.|+++++ .++.+  .++. +++|++|++++|.+..  ++ ++.+++|+.|++++|.+.+
T Consensus       183 ---~~l~--l~~l~~L~~L~l~~N-~l~~~--~l~~-l~~L~~L~Ls~N~l~~--ip-~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          183 ---TELD--VSQNKLLNRLNCDTN-NITKL--DLNQ-NIQLTFLDCSSNKLTE--ID-VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             ---CCCC--CTTCTTCCEEECCSS-CCSCC--CCTT-CTTCSEEECCSSCCSC--CC-CTTCTTCSEEECCSSCCSC
T ss_pred             ---ceec--cccCCCCCEEECcCC-cCCee--cccc-CCCCCEEECcCCcccc--cC-ccccCCCCEEEeeCCcCCC
Confidence               3333  777888888888773 33333  2444 6666666666666543  22 5566666666665555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=4.6e-22  Score=185.53  Aligned_cols=265  Identities=14%  Similarity=0.066  Sum_probs=163.4

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL  190 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L  190 (397)
                      ...++.+.+..+......+.  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.+..+|..+.  .+|
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L  125 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-----KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL  125 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-----EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-----ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence            34566666663333333332  56666666666666554     23 3334666667777776666666665554  566


Q ss_pred             ceEecCCCCCcccCcc-ccCCCCCcEEecCCcccc---cchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcC
Q 045321          191 KHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVD---HSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL  266 (397)
Q Consensus       191 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~---~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~  266 (397)
                      ++|++++|.+..+|.. ++.+++|++|++++|.+.   ..|..+..+ +|++|+++ ++....+|..+.  ++|+.++++
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~-~n~l~~l~~~~~--~~L~~L~l~  201 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS-EAKLTGIPKDLP--ETLNELHLD  201 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC-SSBCSSCCSSSC--SSCSCCBCC
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc-CCCCCccCcccc--CCCCEEECC
Confidence            6777766666666543 566667777777666443   234445555 66677766 666666665544  567777777


Q ss_pred             CCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321          267 NPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS  345 (397)
Q Consensus       267 ~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~  345 (397)
                      +|.+   ....+..+..+++|+.|+++++ .++.+.. ++.. +++|++|++++|.+. ..+..++.+++|++|++++|.
T Consensus       202 ~n~i---~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          202 HNKI---QAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSF-LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             SSCC---CCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGG-CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred             CCcC---CccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhC-CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence            7755   3344466778888888888773 3443322 4555 889999999999875 455668899999999998776


Q ss_pred             ccCceeEEe-C---CCCCCCCCEEEEecCCCcCcE---EECCCccccccccccccccC
Q 045321          346 YLGRKLACV-G---SSSFPKLTVLHLKSMYWQDEW---TMGAGAMPKLESLIVNPCAY  396 (397)
Q Consensus       346 ~~~~~~~~~-~---~~~~~~L~~L~l~~~~~l~~~---~~~~~~~p~L~~L~i~~C~~  396 (397)
                      +........ +   ...+++|+.|++.+++ +..+   +.....+++|+.+++.++.+
T Consensus       276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~~  332 (332)
T 2ft3_A          276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYKK  332 (332)
T ss_dssp             CCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred             CCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhcccccC
Confidence            643321111 0   1125789999999876 3322   22344678888888888764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=6.2e-22  Score=193.78  Aligned_cols=248  Identities=15%  Similarity=0.069  Sum_probs=175.1

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~  189 (397)
                      ..+++.|.+..+......+.  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.+..+ |..+.++++
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-----LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-----SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-----ccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            56788888874444444333  77888999988888765     44 44557888888888888888744 567788888


Q ss_pred             CceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcC
Q 045321          190 LKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISAL  266 (397)
Q Consensus       190 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~  266 (397)
                      |++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|+.|+++ ++....++. .++.+++|+.++++
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~l~  208 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR-HLNINAIRDYSFKRLYRLKVLEIS  208 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE-SCCCCEECTTCSCSCTTCCEEEEE
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC-CCcCcEeChhhcccCcccceeeCC
Confidence            88888888887755 45678888888888888877777654 7788888888888 766554443 56677777777776


Q ss_pred             CCee-----------------eEE----eccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCC
Q 045321          267 NPNL-----------------SCY----HSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQ  324 (397)
Q Consensus       267 ~~~L-----------------~i~----~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~  324 (397)
                      +|..                 .+.    .......+..+++|+.|+++++ .++.+.. .+.. +++|+.|++++|.+..
T Consensus       209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~  286 (477)
T 2id5_A          209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHE-LLRLQEIQLVGGQLAV  286 (477)
T ss_dssp             CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTT-CTTCCEEECCSSCCSE
T ss_pred             CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccc-cccCCEEECCCCccce
Confidence            5421                 111    1111234555556666666552 2333322 3556 8999999999999877


Q ss_pred             CCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          325 DPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       325 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      ..+..+..+++|+.|+|++|.+....  ......+++|+.|++.+++
T Consensus       287 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          287 VEPYAFRGLNYLRVLNVSGNQLTTLE--ESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             ECTTTBTTCTTCCEEECCSSCCSCCC--GGGBSCGGGCCEEECCSSC
T ss_pred             ECHHHhcCcccCCEEECCCCcCceeC--HhHcCCCcccCEEEccCCC
Confidence            67778999999999999887665432  2214678999999999865

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=193.98  Aligned_cols=265  Identities=15%  Similarity=0.131  Sum_probs=170.7

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL  190 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L  190 (397)
                      ..+++++.+..+.....++.  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.++.+|..  .+.+|
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L   92 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL   92 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred             cccccEEECCCCcccccChhhccccccccEEecCCCccC-----CcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence            46788888885554444433  77888999988888775     34 55558888899999999888888776  78889


Q ss_pred             ceEecCCCCCcc--cCccccCCCCCcEEecCCcccccchhhhhccccC--cEEEecCCCCC---CCCCccccC-------
Q 045321          191 KHLKLNIPSLKC--LPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKL--MHLNFGSITLP---APPKNYSSS-------  256 (397)
Q Consensus       191 ~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L--~~L~l~~~~~~---~~~p~~i~~-------  256 (397)
                      ++|++++|.+..  +|..++++++|++|++++|.+..  ..++.+++|  ++|+++ ++..   ...|..++.       
T Consensus        93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~-~n~l~~~~~~~~~l~~l~~~~l~  169 (520)
T 2z7x_B           93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLV-LGETYGEKEDPEGLQDFNTESLH  169 (520)
T ss_dssp             SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEE-ECTTTTSSCCTTTTTTCCEEEEE
T ss_pred             cEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEee-cccccccccccccccccccceEE
Confidence            999998888875  56788888899999988886655  346677777  888887 6543   233333333       


Q ss_pred             -------------------CCCCcEEEcC---------------------------------------------------
Q 045321          257 -------------------LKNLIFISAL---------------------------------------------------  266 (397)
Q Consensus       257 -------------------l~~L~~l~l~---------------------------------------------------  266 (397)
                                         +++|+.++++                                                   
T Consensus       170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L  249 (520)
T 2z7x_B          170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV  249 (520)
T ss_dssp             EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred             EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence                               2233333222                                                   


Q ss_pred             ------CCeeeEEeccHHhhh-----cCCCCCcEEEeecC---------------CCeeEEEe--------c-cCCCCCC
Q 045321          267 ------NPNLSCYHSGVSNSL-----LGLHKLECLKLVNE---------------SKLSRVVL--------S-KYQFPLS  311 (397)
Q Consensus       267 ------~~~L~i~~~~~~~~l-----~~l~~L~~L~l~~~---------------~~L~~L~l--------~-~~~~l~~  311 (397)
                            +|.+   ...++..+     +.+++|+.++++++               ++++.|.+        . ... +++
T Consensus       250 ~~L~l~~n~l---~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-l~~  325 (520)
T 2z7x_B          250 WYFSISNVKL---QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK-ISP  325 (520)
T ss_dssp             SEEEEEEEEE---ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS-CCC
T ss_pred             cEEEeecccc---cCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh-CCc
Confidence                  2221   12334444     44445555544432               12444444        1 134 778


Q ss_pred             ceEEEEecccCCCCCccccccCcCCceEEEecccccCc-eeEEeCCCCCCCCCEEEEecCCCcCc-EEEC-CCccccccc
Q 045321          312 LSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGR-KLACVGSSSFPKLTVLHLKSMYWQDE-WTMG-AGAMPKLES  388 (397)
Q Consensus       312 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~-~~~~p~L~~  388 (397)
                      |++|++++|.+....+..++.+++|++|++++|...+. .++.. ...+++|+.|+++++. +.. ++.. ...+++|+.
T Consensus       326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM-TTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH-HTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCE
T ss_pred             ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH-HhhCCCCCEEECCCCc-CCcccccchhccCccCCE
Confidence            88888888887666677788888888888877665431 12222 4677788888888764 333 4322 334566666


Q ss_pred             cccccc
Q 045321          389 LIVNPC  394 (397)
Q Consensus       389 L~i~~C  394 (397)
                      |++++|
T Consensus       404 L~Ls~N  409 (520)
T 2z7x_B          404 LNMSSN  409 (520)
T ss_dssp             EECCSS
T ss_pred             EECcCC
Confidence            666655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=9.6e-21  Score=176.38  Aligned_cols=241  Identities=17%  Similarity=0.154  Sum_probs=193.4

Q ss_pred             CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321          135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSLLCTILN  212 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~  212 (397)
                      -.++++.|.+.++...     .+ +..|..+++|++|++++|.++.+ |..++++++|++|++++|.++++|..+.  ++
T Consensus        50 ~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~  122 (330)
T 1xku_A           50 LPPDTALLDLQNNKIT-----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT  122 (330)
T ss_dssp             CCTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred             CCCCCeEEECCCCcCC-----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence            3578999999999876     44 43459999999999999999866 7889999999999999999999998776  79


Q ss_pred             CcEEecCCcccccchh-hhhccccCcEEEecCCCCCC---CCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321          213 LQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPA---PPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE  288 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~---~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~  288 (397)
                      |++|++++|.+..++. .++++++|++|+++ ++...   ..+..++.+++|+.+++++|.+    ..++..+.  ++|+
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l----~~l~~~~~--~~L~  195 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELG-TNPLKSSGIENGAFQGMKKLSYIRIADTNI----TTIPQGLP--PSLT  195 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECC-SSCCCGGGBCTTGGGGCTTCCEEECCSSCC----CSCCSSCC--TTCS
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECC-CCcCCccCcChhhccCCCCcCEEECCCCcc----ccCCcccc--ccCC
Confidence            9999999998888776 48999999999999 87654   4566789999999999999865    34444443  7899


Q ss_pred             EEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEE
Q 045321          289 CLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL  367 (397)
Q Consensus       289 ~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l  367 (397)
                      .|+++++ .++.+.. ++.. +++|++|++++|.+.......++.+++|++|++++|...  .++.. ...+++|+.|++
T Consensus       196 ~L~l~~n-~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~-l~~l~~L~~L~l  270 (330)
T 1xku_A          196 ELHLDGN-KITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGG-LADHKYIQVVYL  270 (330)
T ss_dssp             EEECTTS-CCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTT-TTTCSSCCEEEC
T ss_pred             EEECCCC-cCCccCHHHhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChh-hccCCCcCEEEC
Confidence            9999884 4555532 5677 999999999999986666667899999999999887665  33444 678899999999


Q ss_pred             ecCCCcCcEEECC-------Ccccccccccccccc
Q 045321          368 KSMYWQDEWTMGA-------GAMPKLESLIVNPCA  395 (397)
Q Consensus       368 ~~~~~l~~~~~~~-------~~~p~L~~L~i~~C~  395 (397)
                      ++++ +..++...       ...+.|+.+++.+.|
T Consensus       271 ~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence            9864 66664321       124778888887655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=1.6e-21  Score=196.59  Aligned_cols=262  Identities=18%  Similarity=0.160  Sum_probs=165.8

Q ss_pred             CCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCCCCce
Q 045321          115 ANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLILLKH  192 (397)
Q Consensus       115 ~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~  192 (397)
                      .+++.+.+..+.... .+. ..+++|++|.+.++...     .++.+  .++.|++|++++|... ..  .++.+++|++
T Consensus       285 ~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l~-----~lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~  354 (606)
T 3vq2_A          285 ANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQLK-----QFPTL--DLPFLKSLTLTMNKGSISF--KKVALPSLSY  354 (606)
T ss_dssp             TTCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCCS-----SCCCC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCE
T ss_pred             CCCCEEEecCccchh-hhhccccccCCEEEcccccCc-----ccccC--CCCccceeeccCCcCccch--hhccCCCCCE
Confidence            445555555322222 224 55566666666666552     33322  5566666666666422 22  3456666666


Q ss_pred             EecCCCCCccc---CccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCC--ccccCCCCCcEEEcCC
Q 045321          193 LKLNIPSLKCL---PSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPK--NYSSSLKNLIFISALN  267 (397)
Q Consensus       193 L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~l~l~~  267 (397)
                      |++++|.+..+   |..++.+++|++|++++|.+..+|..+..+++|+.|+++ ++.....+  ..++.+++|+.+++++
T Consensus       355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~  433 (606)
T 3vq2_A          355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ-HSTLKRVTEFSAFLSLEKLLYLDISY  433 (606)
T ss_dssp             EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT-TSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred             EECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC-CCccCCccChhhhhccccCCEEECcC
Confidence            66666666544   566666677777777766666666666666777777776 65533333  3566667777777766


Q ss_pred             CeeeEEeccHHhhhcCCCCCcEEEeecCCCeeE--EEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321          268 PNLSCYHSGVSNSLLGLHKLECLKLVNESKLSR--VVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS  345 (397)
Q Consensus       268 ~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~--L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~  345 (397)
                      |.+   ....+..++.+++|+.|+++++ .+..  ++-++.. +++|++|++++|.+....+..++.+++|++|++++|.
T Consensus       434 n~l---~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          434 TNT---KIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             SCC---EECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCC---CccchhhhcCCCCCCEEECCCC-cCCCcchHHhhcc-CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            655   3445556666777777777664 2221  2224566 8889999999988766666778888999999997776


Q ss_pred             ccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccc-ccccccccccc
Q 045321          346 YLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMP-KLESLIVNPCA  395 (397)
Q Consensus       346 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p-~L~~L~i~~C~  395 (397)
                      ..+. .+.. ...+++|+.|+++++. +..++.....+| +|+.|++.++|
T Consensus       509 l~~~-~~~~-~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          509 LLFL-DSSH-YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             CSCE-EGGG-TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred             CCCc-CHHH-ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence            5443 2333 6778889999998874 778877666776 58888888765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=6.3e-21  Score=185.31  Aligned_cols=246  Identities=15%  Similarity=0.094  Sum_probs=183.5

Q ss_pred             CCCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceE
Q 045321          114 LANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHL  193 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L  193 (397)
                      ..+++++.+..+.... .+-..+++|++|.+.++....     + ++ ..++.|++|++++|.++.+|  ++.+++|++|
T Consensus        63 l~~L~~L~Ls~n~l~~-~~~~~l~~L~~L~Ls~N~l~~-----~-~~-~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L  132 (457)
T 3bz5_A           63 LTGLTKLICTSNNITT-LDLSQNTNLTYLACDSNKLTN-----L-DV-TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL  132 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSC-----C-CC-TTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCe-EccccCCCCCEEECcCCCCce-----e-ec-CCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence            6789999998544333 222788999999999998763     2 34 89999999999999999886  8999999999


Q ss_pred             ecCCCCCcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeE
Q 045321          194 KLNIPSLKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSC  272 (397)
Q Consensus       194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i  272 (397)
                      ++++|.++.+|  ++.+++|++|++++| .+..+  .++.+++|++|+++ ++....+|  ++.+++|+.+++++|.+  
T Consensus       133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls-~n~l~~l~--l~~l~~L~~L~l~~N~l--  203 (457)
T 3bz5_A          133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS-FNKITELD--VSQNKLLNRLNCDTNNI--  203 (457)
T ss_dssp             ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC-SSCCCCCC--CTTCTTCCEEECCSSCC--
T ss_pred             ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC-CCccceec--cccCCCCCEEECcCCcC--
Confidence            99999999885  889999999999999 77777  47889999999999 88887776  88999999999999866  


Q ss_pred             EeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEe----------
Q 045321          273 YHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLK----------  342 (397)
Q Consensus       273 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~----------  342 (397)
                        ..+  .++.+++|+.|+++++ .++.++  +.. +++|+.|++++|.+...+   ++.+++|+.|.++          
T Consensus       204 --~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~-l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~  272 (457)
T 3bz5_A          204 --TKL--DLNQNIQLTFLDCSSN-KLTEID--VTP-LTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLT  272 (457)
T ss_dssp             --SCC--CCTTCTTCSEEECCSS-CCSCCC--CTT-CTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCT
T ss_pred             --Cee--ccccCCCCCEEECcCC-cccccC--ccc-cCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECC
Confidence              222  4788999999999984 455543  556 888889999888875544   3344444444433          


Q ss_pred             cccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccccC
Q 045321          343 QNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAY  396 (397)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~  396 (397)
                      +|...+ .++   .+.+++|+.|++++|+.++.++.   .+++|+.|++++|++
T Consensus       273 ~n~~~~-~~~---~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~  319 (457)
T 3bz5_A          273 HNTQLI-YFQ---AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPK  319 (457)
T ss_dssp             TCTTCC-EEE---CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTT
T ss_pred             CCccCC-ccc---ccccccCCEEECCCCcccceecc---CCCcceEechhhccc
Confidence            232222 122   35667777777777776666653   234444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=7.1e-22  Score=182.04  Aligned_cols=224  Identities=18%  Similarity=0.144  Sum_probs=183.6

Q ss_pred             CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc---cccccCCCCCceEecCCCCCcccCccccCC
Q 045321          135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF---PLGLENLILLKHLKLNIPSLKCLPSLLCTI  210 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l  210 (397)
                      -.+++++|.+.++...     .+ +.+|..+++|++|++++|.+..+   |..+..+.+|++|++++|.+..+|..+..+
T Consensus        26 ~~~~l~~L~L~~n~l~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l  100 (306)
T 2z66_A           26 IPSSATRLELESNKLQ-----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL  100 (306)
T ss_dssp             CCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred             CCCCCCEEECCCCccC-----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence            3478999999998875     45 55568999999999999998744   677788999999999999999999999999


Q ss_pred             CCCcEEecCCcccccchh--hhhccccCcEEEecCCCCCCC-CCccccCCCCCcEEEcCCCeeeEEec-cHHhhhcCCCC
Q 045321          211 LNLQTLEMPSSYVDHSLE--DIWMMQKLMHLNFGSITLPAP-PKNYSSSLKNLIFISALNPNLSCYHS-GVSNSLLGLHK  286 (397)
Q Consensus       211 ~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~l~l~~~~L~i~~~-~~~~~l~~l~~  286 (397)
                      ++|++|++++|.+..+|.  .+..+++|++|+++ ++.... .|..++.+++|+.+++++|.+   .. ..+..+..+++
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~~l~~  176 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGNSF---QENFLPDIFTELRN  176 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT-TSCCEECSTTTTTTCTTCCEEECTTCEE---GGGEECSCCTTCTT
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECC-CCcCCccchhhcccCcCCCEEECCCCcc---ccccchhHHhhCcC
Confidence            999999999998888875  68999999999999 876543 455688999999999999966   23 46778899999


Q ss_pred             CcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCC-CCCE
Q 045321          287 LECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFP-KLTV  364 (397)
Q Consensus       287 L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-~L~~  364 (397)
                      |+.|+++++ .++.+.. ++.. +++|++|++++|.+.......++.+++|+.|++++|...+.. +.. ...++ +|+.
T Consensus       177 L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~~~~~L~~  252 (306)
T 2z66_A          177 LTFLDLSQC-QLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQE-LQHFPSSLAF  252 (306)
T ss_dssp             CCEEECTTS-CCCEECTTTTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-SSS-CCCCCTTCCE
T ss_pred             CCEEECCCC-CcCCcCHHHhcC-CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-HHH-HHhhhccCCE
Confidence            999999984 5555532 5666 899999999999987666667889999999999877665432 222 45664 8999


Q ss_pred             EEEecCC
Q 045321          365 LHLKSMY  371 (397)
Q Consensus       365 L~l~~~~  371 (397)
                      |++++++
T Consensus       253 L~L~~N~  259 (306)
T 2z66_A          253 LNLTQND  259 (306)
T ss_dssp             EECTTCC
T ss_pred             EEccCCC
Confidence            9999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=6.1e-21  Score=190.60  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=73.8

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL  190 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L  190 (397)
                      +.+++++.+..+.....++.  ..+++|++|.+.++...     .+ ++.|..++.|++|++++|.++.+|..  .+.+|
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L  123 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL  123 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence            45677777775554444433  77788888888877665     33 44457778888888888887777766  67888


Q ss_pred             ceEecCCCCCcccC--ccccCCCCCcEEecCCcccc
Q 045321          191 KHLKLNIPSLKCLP--SLLCTILNLQTLEMPSSYVD  224 (397)
Q Consensus       191 ~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~  224 (397)
                      ++|++++|.+..+|  ..++++++|++|++++|.+.
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            88888888777654  67777888888887777544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.86  E-value=3.5e-21  Score=187.91  Aligned_cols=194  Identities=19%  Similarity=0.207  Sum_probs=133.4

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNL  213 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L  213 (397)
                      ..++++++|.+.++...     .++.+ ..+++|++|++++|.++.+|+ ++++++|++|++++|.+..+|. ++++++|
T Consensus        43 ~~l~~l~~L~l~~~~i~-----~l~~~-~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L  114 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIK-----SIDGV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNL  114 (466)
T ss_dssp             HHHHTCCEEECCSSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             hHhccccEEecCCCCCc-----cCcch-hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCC
Confidence            34678999999888765     45565 889999999999999998887 9999999999999999998887 9999999


Q ss_pred             cEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc--------------------cccCCCCCcEEEcCCCeeeEE
Q 045321          214 QTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN--------------------YSSSLKNLIFISALNPNLSCY  273 (397)
Q Consensus       214 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~--------------------~i~~l~~L~~l~l~~~~L~i~  273 (397)
                      ++|++++|.+..+|. ++++++|++|+++ +|....++.                    .++++++|+.+++++|.+   
T Consensus       115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l---  189 (466)
T 1o6v_A          115 TGLTLFNNQITDIDP-LKNLTNLNRLELS-SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV---  189 (466)
T ss_dssp             CEEECCSSCCCCCGG-GTTCTTCSEEEEE-EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC---
T ss_pred             CEEECCCCCCCCChH-HcCCCCCCEEECC-CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC---
Confidence            999999999988887 8999999999998 776554432                    134445555555555533   


Q ss_pred             eccHHhhhcCCCCCcEEEeecC-----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCccccccC
Q 045321          274 HSGVSNSLLGLHKLECLKLVNE-----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIMEKL  333 (397)
Q Consensus       274 ~~~~~~~l~~l~~L~~L~l~~~-----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l  333 (397)
                       ..+ ..+..+++|+.|+++++           ++|+.|.+         .+.. +++|++|++++|.+...  ..++.+
T Consensus       190 -~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~-l~~L~~L~l~~n~l~~~--~~~~~l  264 (466)
T 1o6v_A          190 -SDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-LTNLTDLDLANNQISNL--APLSGL  264 (466)
T ss_dssp             -CCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCCC--GGGTTC
T ss_pred             -CCC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhc-CCCCCEEECCCCccccc--hhhhcC
Confidence             111 23455555666655543           34444444         1222 45555555555554221  124445


Q ss_pred             cCCceEEEeccc
Q 045321          334 PRLQVLKLKQNS  345 (397)
Q Consensus       334 ~~L~~L~L~~~~  345 (397)
                      ++|++|++++|.
T Consensus       265 ~~L~~L~l~~n~  276 (466)
T 1o6v_A          265 TKLTELKLGANQ  276 (466)
T ss_dssp             TTCSEEECCSSC
T ss_pred             CCCCEEECCCCc
Confidence            555555554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=4.4e-21  Score=186.50  Aligned_cols=247  Identities=16%  Similarity=0.095  Sum_probs=182.6

Q ss_pred             CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcc-cc-cccccCCCCCceEecCCCCCccc-CccccCC
Q 045321          135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLD-QF-PLGLENLILLKHLKLNIPSLKCL-PSLLCTI  210 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~-~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l  210 (397)
                      -.+++++|.+.++...     .+ +..|..+++|++|++++|.+. .+ |..++++++|++|++++|.+..+ |..++++
T Consensus        28 l~~~l~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  102 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIA-----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL  102 (455)
T ss_dssp             CCTTCCEEECCSSCCC-----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred             CCCccCEEEecCCccC-----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence            3478999999999876     34 555599999999999999986 45 56799999999999999999866 7889999


Q ss_pred             CCCcEEecCCccccc-chhh--hhccccCcEEEecCCCCCCCC-Ccc-ccCCCCCcEEEcCCCeeeEEeccHHhhh----
Q 045321          211 LNLQTLEMPSSYVDH-SLED--IWMMQKLMHLNFGSITLPAPP-KNY-SSSLKNLIFISALNPNLSCYHSGVSNSL----  281 (397)
Q Consensus       211 ~~L~~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~~~~~~-p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l----  281 (397)
                      ++|++|++++|.+.. .|..  ++.+++|++|+++ ++....+ |.. ++++++|+.+++++|.+   ....+..+    
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~l~~l~  178 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR-DNNIKKIQPASFFLNMRRFHVLDLTFNKV---KSICEEDLLNFQ  178 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC-SSBCCSCCCCGGGGGCTTCCEEECTTCCB---SCCCTTTSGGGT
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECC-CCccCccCcccccCCCCcccEEeCCCCcc---cccChhhhhccc
Confidence            999999999998775 4554  8999999999999 8887666 444 88999999999999855   22222222    


Q ss_pred             ------------------------------cCCCCCcEEEeecC----------------C-------------------
Q 045321          282 ------------------------------LGLHKLECLKLVNE----------------S-------------------  296 (397)
Q Consensus       282 ------------------------------~~l~~L~~L~l~~~----------------~-------------------  296 (397)
                                                    ..+++|+.|+++++                +                   
T Consensus       179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  258 (455)
T 3v47_A          179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH  258 (455)
T ss_dssp             TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred             cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence                                          23467888888875                2                   


Q ss_pred             -----------------CeeEEEe-----------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321          297 -----------------KLSRVVL-----------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       297 -----------------~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                                       +|+.+.+           +++. +++|++|++++|.+....+..++.+++|++|++++|....
T Consensus       259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  337 (455)
T 3v47_A          259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS  337 (455)
T ss_dssp             CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             hhhccCcccccccccccCceEEEecCccccccchhhccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence                             3444444           2344 6777777777777655555567777778888876665422


Q ss_pred             ceeEEeCCCCCCCCCEEEEecCCCcCcE-EECCCccccccccccccc
Q 045321          349 RKLACVGSSSFPKLTVLHLKSMYWQDEW-TMGAGAMPKLESLIVNPC  394 (397)
Q Consensus       349 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~p~L~~L~i~~C  394 (397)
                       ..+.. ...+++|+.|+++++. +..+ +.....+++|++|++++|
T Consensus       338 -~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          338 -IDSRM-FENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN  381 (455)
T ss_dssp             -ECGGG-GTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             -cChhH-hcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC
Confidence             11222 5677888888888763 5555 334566788888888775

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=2.6e-21  Score=178.27  Aligned_cols=225  Identities=16%  Similarity=0.149  Sum_probs=152.2

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL  190 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L  190 (397)
                      +.+++++.+..+.....+..  ..+++|++|.+.++....  .... ..+ ..++.|++|++++|.+..+|..+..+++|
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L  103 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF--KGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQL  103 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE--EEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc--ccCccccc-ccccccCEEECCCCccccChhhcCCCCCC
Confidence            45677777774444443433  567788888887776542  1111 333 56777888888888877777777778888


Q ss_pred             ceEecCCCCCcccCc--cccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCC--CCccccCCCCCcEEEc
Q 045321          191 KHLKLNIPSLKCLPS--LLCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAP--PKNYSSSLKNLIFISA  265 (397)
Q Consensus       191 ~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~l~l  265 (397)
                      ++|++++|.+..+|.  .+..+++|++|++++|.+... |..+..+++|++|+++ ++....  +|..++.+++|+.+++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA-GNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT-TCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC-CCccccccchhHHhhCcCCCEEEC
Confidence            888888877776653  677778888888887765544 3447777788888887 665443  6677777888888888


Q ss_pred             CCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCc-CCceEEEec
Q 045321          266 LNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLP-RLQVLKLKQ  343 (397)
Q Consensus       266 ~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~-~L~~L~L~~  343 (397)
                      ++|.+   ....+..+..+++|+.|+++++ .++.+.. .+.. +++|++|++++|.+....+..+..++ +|++|++++
T Consensus       183 s~n~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          183 SQCQL---EQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             TTSCC---CEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTT-CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred             CCCCc---CCcCHHHhcCCCCCCEEECCCC-ccCccChhhccC-cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence            77765   3344566777778888888763 3333322 3455 77788888888877666666677774 788888866


Q ss_pred             cccc
Q 045321          344 NSYL  347 (397)
Q Consensus       344 ~~~~  347 (397)
                      |.+.
T Consensus       258 N~~~  261 (306)
T 2z66_A          258 NDFA  261 (306)
T ss_dssp             CCEE
T ss_pred             CCee
Confidence            6553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=4e-21  Score=192.09  Aligned_cols=149  Identities=13%  Similarity=0.031  Sum_probs=109.7

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~  189 (397)
                      +..++++.+..+........  ..+++|++|.+.++...     .+ +..|.++++|++|++++|.++.+| ..++++.+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            55688888885444443333  77888999988888765     34 444588888888888888887665 67888888


Q ss_pred             CceEecCCCCCcccCc-cccCCCCCcEEecCCccccc--chhhhhccccCcEEEecCCCCCCCCC-ccccCCCCC----c
Q 045321          190 LKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDH--SLEDIWMMQKLMHLNFGSITLPAPPK-NYSSSLKNL----I  261 (397)
Q Consensus       190 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L----~  261 (397)
                      |++|++++|.+..+|. .++++++|++|++++|.+..  +|..++++++|++|+++ ++....++ ..++.+++|    +
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~~~~  180 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDLRVLHQMPLLNL  180 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT-TSCCCEECGGGGHHHHTCTTCCC
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc-CCccceecHHHccchhccchhhh
Confidence            8888888888887765 58888888888888886664  67888888888888888 77655543 445555555    5


Q ss_pred             EEEcCCC
Q 045321          262 FISALNP  268 (397)
Q Consensus       262 ~l~l~~~  268 (397)
                      .+++++|
T Consensus       181 ~L~l~~n  187 (570)
T 2z63_A          181 SLDLSLN  187 (570)
T ss_dssp             EEECTTC
T ss_pred             hcccCCC
Confidence            5666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=1.3e-21  Score=182.46  Aligned_cols=258  Identities=13%  Similarity=0.108  Sum_probs=194.9

Q ss_pred             CeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceE
Q 045321          116 NVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHL  193 (397)
Q Consensus       116 ~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L  193 (397)
                      .++.+.+..+.... .+..-.+++++|.+.++...     .+ +..|..+++|++|++++|.++.+ |..++++++|++|
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEISPDTTLLDLQNNDIS-----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCCCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCCCccc-cCCCCCCCCeEEECCCCcCC-----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            34555555222222 33333578999999998775     34 44458999999999999999866 7789999999999


Q ss_pred             ecCCCCCcccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCC---CCCccccCCCCCcEEEcCCCe
Q 045321          194 KLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPA---PPKNYSSSLKNLIFISALNPN  269 (397)
Q Consensus       194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~---~~p~~i~~l~~L~~l~l~~~~  269 (397)
                      ++++|.+.++|..+.  ++|++|++++|.+..+|.. ++.+++|++|+++ ++...   ..|..++.+ +|+.+++++|.
T Consensus       108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG-GNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC-SCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC-CCccccCCCCcccccCC-ccCEEECcCCC
Confidence            999999999998776  8999999999988888765 8899999999999 77653   445667777 89999999886


Q ss_pred             eeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321          270 LSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       270 L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                      +    ..++..+.  ++|+.|+++++ .++.+.. .+.. +++|++|++++|.+.......++.+++|++|++++|... 
T Consensus       184 l----~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-  254 (332)
T 2ft3_A          184 L----TGIPKDLP--ETLNELHLDHN-KIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-  254 (332)
T ss_dssp             C----SSCCSSSC--SSCSCCBCCSS-CCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             C----CccCcccc--CCCCEEECCCC-cCCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence            5    34554443  68888998874 3444331 4566 899999999999987766678999999999999877664 


Q ss_pred             ceeEEeCCCCCCCCCEEEEecCCCcCcEEECC-------Ccccccccccccccc
Q 045321          349 RKLACVGSSSFPKLTVLHLKSMYWQDEWTMGA-------GAMPKLESLIVNPCA  395 (397)
Q Consensus       349 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~p~L~~L~i~~C~  395 (397)
                       .++.. ...+++|+.|+++++ .+..++...       ..+++|+.|++.++|
T Consensus       255 -~lp~~-l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          255 -RVPAG-LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             -BCCTT-GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             -ecChh-hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence             34444 677899999999986 466664321       125778899888776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.85  E-value=7.6e-22  Score=196.50  Aligned_cols=149  Identities=19%  Similarity=0.128  Sum_probs=117.2

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccccc-ccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLG-LENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~  189 (397)
                      ...++++.+..+......+.  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.+..+|.. ++++++
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-----ccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence            46789999885555554443  88999999999998875     33 44558999999999999999877654 899999


Q ss_pred             CceEecCCCCCcc--cCccccCCCCCcEEecCCcc-cccchh-hhhccccCcEEEecCCCCCCC-CCccccCCCCCcEEE
Q 045321          190 LKHLKLNIPSLKC--LPSLLCTILNLQTLEMPSSY-VDHSLE-DIWMMQKLMHLNFGSITLPAP-PKNYSSSLKNLIFIS  264 (397)
Q Consensus       190 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~-l~~lp~-~~~~L~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~l~  264 (397)
                      |++|++++|.+..  .|..++++++|++|++++|. +..+|. .++.+++|++|+++ ++.... .|..++.+++|+.++
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~L~~L~  178 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK-ALSLRNYQSQSLKSIRDIHHLT  178 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEECTTTTTTCSEEEEEE
T ss_pred             CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc-CCcccccChhhhhccccCceEe
Confidence            9999999999874  46788999999999999994 778874 68899999999998 776443 566777766666666


Q ss_pred             cCCC
Q 045321          265 ALNP  268 (397)
Q Consensus       265 l~~~  268 (397)
                      ++.+
T Consensus       179 l~~n  182 (549)
T 2z81_A          179 LHLS  182 (549)
T ss_dssp             EECS
T ss_pred             cccC
Confidence            5544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=2.6e-21  Score=197.65  Aligned_cols=270  Identities=15%  Similarity=0.072  Sum_probs=176.6

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~  189 (397)
                      +.+++++.+..+.....+..  ..+++|++|.+.++...     .+ +..|.+++.|++|++++|.++.+|. .++++++
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~   98 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN   98 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence            56788998885555554443  77899999999888765     33 5555889999999999999888876 5889999


Q ss_pred             CceEecCCCCCcccC-ccccCCCCCcEEecCCcccccch-hhhhccccCcEEEecCCCCCCCCCcc---ccCCCCCcEEE
Q 045321          190 LKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVDHSL-EDIWMMQKLMHLNFGSITLPAPPKNY---SSSLKNLIFIS  264 (397)
Q Consensus       190 L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~~---i~~l~~L~~l~  264 (397)
                      |++|++++|.+..+| ..++++++|++|++++|.+...+ ..++++++|++|+++ ++....+++.   ...+++|+.++
T Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS-NNKIQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC-SSCCCCBCHHHHGGGTTCEESEEE
T ss_pred             CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc-CCcccccCHHHhhccccccccEEE
Confidence            999999999888776 56889999999999999666654 457889999999998 7776665543   23567888888


Q ss_pred             cCCCeeeEEeccHHhhhcCC---------------------------CCCcEEEeecC---------------CCeeEEE
Q 045321          265 ALNPNLSCYHSGVSNSLLGL---------------------------HKLECLKLVNE---------------SKLSRVV  302 (397)
Q Consensus       265 l~~~~L~i~~~~~~~~l~~l---------------------------~~L~~L~l~~~---------------~~L~~L~  302 (397)
                      +++|.+   ....+..+..+                           ++|+.|+++++               ++|+.|.
T Consensus       178 L~~n~l---~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~  254 (680)
T 1ziw_A          178 LSSNQI---KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD  254 (680)
T ss_dssp             CTTCCC---CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred             CCCCcc---cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence            888754   22333333333                           34555555442               1255554


Q ss_pred             e-----------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCc----eeEE---eCCCCCCCCCE
Q 045321          303 L-----------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGR----KLAC---VGSSSFPKLTV  364 (397)
Q Consensus       303 l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~---~~~~~~~~L~~  364 (397)
                      +           +++. +++|++|++++|.+....+..++.+++|+.|+++++...+.    .++.   .....+++|+.
T Consensus       255 Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          255 LSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             CTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             CCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            4           2344 66666777666665544445566666666666643221110    1111   01445667777


Q ss_pred             EEEecCCCcCcEE-ECCCccccccccccccc
Q 045321          365 LHLKSMYWQDEWT-MGAGAMPKLESLIVNPC  394 (397)
Q Consensus       365 L~l~~~~~l~~~~-~~~~~~p~L~~L~i~~C  394 (397)
                      |+++++. +..++ .....+++|++|++++|
T Consensus       334 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          334 LNMEDND-IPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             EECCSCC-BCCCCTTTTTTCTTCCEEECTTC
T ss_pred             EECCCCc-cCCCChhHhccccCCcEEECCCC
Confidence            7777653 33332 22345667777776655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.85  E-value=1.4e-20  Score=188.04  Aligned_cols=122  Identities=11%  Similarity=0.001  Sum_probs=100.2

Q ss_pred             EEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEec
Q 045321          118 KRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKL  195 (397)
Q Consensus       118 r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l  195 (397)
                      +++.+..+.... ++..-.+++++|.+.++...     .+ +..|..+++|++|++++|.++.+ |..++++++|++|++
T Consensus        34 ~~l~ls~~~L~~-ip~~~~~~L~~L~Ls~N~i~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLPPRTKALSLSQNSIS-----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSCTTCCEEECCSSCCC-----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cEEEcCCCCCcc-CCCCCCCCcCEEECCCCCcc-----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            666666333333 33322489999999999876     44 44559999999999999999966 678999999999999


Q ss_pred             CCCCCcccCccccCCCCCcEEecCCcccccch--hhhhccccCcEEEecCCCCCC
Q 045321          196 NIPSLKCLPSLLCTILNLQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPA  248 (397)
Q Consensus       196 ~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~  248 (397)
                      ++|.++++|..  .+++|++|++++|.+..+|  ..++++++|++|+++ ++...
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~-~n~l~  159 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS-AAKFR  159 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE-CSBCC
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecC-CCccc
Confidence            99999999987  8999999999999888765  789999999999999 76543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=3.6e-21  Score=180.99  Aligned_cols=248  Identities=15%  Similarity=0.067  Sum_probs=184.8

Q ss_pred             CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCcc-ccCCC
Q 045321          135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSL-LCTIL  211 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~  211 (397)
                      -.++|++|.+.++...     .+ +..|..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|.. +++++
T Consensus        50 ~~~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  124 (353)
T 2z80_A           50 LTEAVKSLDLSNNRIT-----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS  124 (353)
T ss_dssp             CCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred             ccccCcEEECCCCcCc-----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence            3468999999988875     34 43448899999999999998866 46789999999999999999998876 78999


Q ss_pred             CCcEEecCCcccccchh--hhhccccCcEEEecCCC-CCCCC-CccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321          212 NLQTLEMPSSYVDHSLE--DIWMMQKLMHLNFGSIT-LPAPP-KNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL  287 (397)
Q Consensus       212 ~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~-~~~~~-p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L  287 (397)
                      +|++|++++|.+..+|.  .++.+++|++|+++ ++ ....+ |..++.+++|+.+++++|.+   ....+..+..+++|
T Consensus       125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~-~n~~~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L  200 (353)
T 2z80_A          125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG-NMDTFTKIQRKDFAGLTFLEELEIDASDL---QSYEPKSLKSIQNV  200 (353)
T ss_dssp             TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTC---CEECTTTTTTCSEE
T ss_pred             cCCEEECCCCCCcccCchhhhccCCCCcEEECC-CCccccccCHHHccCCCCCCEEECCCCCc---CccCHHHHhccccC
Confidence            99999999998888887  68899999999999 76 35555 45688899999999988866   34457788889999


Q ss_pred             cEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCcccc---ccCcCCceEEEecccccCce---eEEeCCCCCC
Q 045321          288 ECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIM---EKLPRLQVLKLKQNSYLGRK---LACVGSSSFP  360 (397)
Q Consensus       288 ~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~  360 (397)
                      +.|+++++. +..+.- .+.. +++|++|++++|.+....+..+   ...+.++.++++++...+..   ++.. ...++
T Consensus       201 ~~L~l~~n~-l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l~  277 (353)
T 2z80_A          201 SHLILHMKQ-HILLLEIFVDV-TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQIS  277 (353)
T ss_dssp             EEEEEECSC-STTHHHHHHHH-TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH-HHTCT
T ss_pred             CeecCCCCc-cccchhhhhhh-cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH-Hhccc
Confidence            999998743 322211 2233 7899999999998765444333   34567777777655443321   1222 45678


Q ss_pred             CCCEEEEecCCCcCcEEECC-Ccccccccccccccc
Q 045321          361 KLTVLHLKSMYWQDEWTMGA-GAMPKLESLIVNPCA  395 (397)
Q Consensus       361 ~L~~L~l~~~~~l~~~~~~~-~~~p~L~~L~i~~C~  395 (397)
                      +|+.|+++++ .+..++... +.+++|++|+++++|
T Consensus       278 ~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          278 GLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            8888888876 466676553 677888888888765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=5.1e-20  Score=178.37  Aligned_cols=220  Identities=19%  Similarity=0.163  Sum_probs=139.8

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~  189 (397)
                      ..+++.+.+..+........  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.++.+|. .+.++++
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  137 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-----TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK  137 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-----EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-----ccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence            44566666664443333333  66677777777776654     33 3444667777777777777766654 4667777


Q ss_pred             CceEecCCCCCcccCc-cccCCCCCcEEecCCc-ccccchh-hhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcC
Q 045321          190 LKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSS-YVDHSLE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL  266 (397)
Q Consensus       190 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~  266 (397)
                      |++|++++|.+..+|. .+..+++|++|++++| .+..+|. .+..+++|++|+++ +|....+| .+..+++|+.++++
T Consensus       138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~-~~~~l~~L~~L~Ls  215 (440)
T 3zyj_A          138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA-MCNLREIP-NLTPLIKLDELDLS  215 (440)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT-TSCCSSCC-CCTTCSSCCEEECT
T ss_pred             CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC-CCcCcccc-ccCCCcccCEEECC
Confidence            7777777777766654 4666777777777765 5666655 36667777777777 66666665 46667777777777


Q ss_pred             CCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321          267 NPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS  345 (397)
Q Consensus       267 ~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~  345 (397)
                      +|.+   ....+..+..+++|+.|++++ ..++.+.. .+.. +++|+.|+|++|.+...+...+..+++|+.|+|++|.
T Consensus       216 ~N~l---~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          216 GNHL---SAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDN-LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TSCC---CEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTT-CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCcc---CccChhhhccCccCCEEECCC-CceeEEChhhhcC-CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            7655   334456666777777777766 34444432 3445 6777777777777665555556677777777776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.83  E-value=2.5e-21  Score=179.31  Aligned_cols=239  Identities=15%  Similarity=0.092  Sum_probs=187.2

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~  212 (397)
                      ..+++|++|.+.++...     .+ +..|..+++|++|++++|.+...++ ++.+++|++|++++|.+..+|.    .++
T Consensus        31 ~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~  100 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLS-----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPS  100 (317)
T ss_dssp             TTGGGCSEEECTTSCCC-----CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred             ccCCCCCEEECcCCccC-----cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCC
Confidence            66789999999998876     34 5555999999999999999986665 8999999999999999887763    489


Q ss_pred             CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhh-cCCCCCcEE
Q 045321          213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSL-LGLHKLECL  290 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l-~~l~~L~~L  290 (397)
                      |++|++++|.+..++..  .+++|++|+++ ++....+++ .++.+++|+.+++++|.+   ....+..+ ..+++|+.|
T Consensus       101 L~~L~l~~n~l~~~~~~--~~~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A          101 IETLHAANNNISRVSCS--RGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             CCEEECCSSCCSEEEEC--CCSSCEEEECC-SSCCCSGGGBCTGGGSSEEEEECTTSCC---CEEEGGGGGGGTTTCCEE
T ss_pred             cCEEECCCCccCCcCcc--ccCCCCEEECC-CCCCCCccchhhhccCCCCEEECCCCCC---CcccHHHHhhccCcCCEE
Confidence            99999999988888753  47899999999 888776654 688899999999999876   33334444 478999999


Q ss_pred             EeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecC
Q 045321          291 KLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM  370 (397)
Q Consensus       291 ~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  370 (397)
                      +++++ .++.+. .... +++|++|++++|.+.. .++.+..+++|++|++++|.+.  .++.. ...+++|+.|+++++
T Consensus       175 ~L~~N-~l~~~~-~~~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~--~l~~~-~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          175 NLQYN-FIYDVK-GQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--LIEKA-LRFSQNLEHFDLRGN  247 (317)
T ss_dssp             ECTTS-CCCEEE-CCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--EECTT-CCCCTTCCEEECTTC
T ss_pred             ECCCC-cCcccc-cccc-cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc--chhhH-hhcCCCCCEEEccCC
Confidence            99984 566664 2334 8999999999999754 4455889999999999877664  34444 678899999999997


Q ss_pred             CCc-CcEEECCCcccccccccccccc
Q 045321          371 YWQ-DEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       371 ~~l-~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      +-. ..++.....+|+|+.+++.+|+
T Consensus       248 ~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          248 GFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             CCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CccCcCHHHHHhccccceEEECCCch
Confidence            643 2333444567888888877543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=6.7e-20  Score=178.12  Aligned_cols=199  Identities=21%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccccc-ccCCCCCceEecCCCCCcccCc-cccCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPS-LLCTI  210 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l  210 (397)
                      ..+++|+.|.+.++...     .+ +..|..+++|++|++++|.++.+|.. ++++++|++|++++|.+..+|. .+.++
T Consensus        96 ~~l~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  170 (452)
T 3zyi_A           96 RHLHHLEVLQLGRNSIR-----QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV  170 (452)
T ss_dssp             TTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             CCCCCCCEEECCCCccC-----CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence            44455555555544433     22 22234455555555555554444322 4445555555555555444433 34445


Q ss_pred             CCCcEEecCCc-ccccchhh-hhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321          211 LNLQTLEMPSS-YVDHSLED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE  288 (397)
Q Consensus       211 ~~L~~L~l~~~-~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~  288 (397)
                      ++|++|++++| .+..+|.. +..+++|++|+++ ++....+| .+..+++|+.+++++|.+   ....+..+..+++|+
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~-~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~  245 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG-MCNIKDMP-NLTPLVGLEELEMSGNHF---PEIRPGSFHGLSSLK  245 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT-TSCCSSCC-CCTTCTTCCEEECTTSCC---SEECGGGGTTCTTCC
T ss_pred             CcccEEeCCCCCCccccChhhccCCCCCCEEECC-CCcccccc-cccccccccEEECcCCcC---cccCcccccCccCCC
Confidence            55555555543 44444432 4445555555555 44444443 344455555555555443   223344444555555


Q ss_pred             EEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecc
Q 045321          289 CLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQN  344 (397)
Q Consensus       289 ~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~  344 (397)
                      .|++++ ..++.+.. .+.. +++|+.|+|++|.+...+...+..+++|+.|+|++|
T Consensus       246 ~L~L~~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          246 KLWVMN-SQVSLIERNAFDG-LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             EEECTT-SCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             EEEeCC-CcCceECHHHhcC-CCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence            555544 22332211 2333 455555555555544333334444555555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=4.4e-20  Score=179.41  Aligned_cols=223  Identities=18%  Similarity=0.119  Sum_probs=180.7

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCcc-ccCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSL-LCTI  210 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l  210 (397)
                      .-.++++.|.+.++...     .+ +..|..+++|++|++++|.++.++ ..+.++.+|++|++++|.+..+|.. +..+
T Consensus        72 ~~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  146 (452)
T 3zyi_A           72 GIPSNTRYLNLMENNIQ-----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL  146 (452)
T ss_dssp             CCCTTCSEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred             CCCCCccEEECcCCcCc-----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence            33478999999999876     34 455599999999999999998665 7789999999999999999988865 7889


Q ss_pred             CCCcEEecCCcccccchh-hhhccccCcEEEecCCC-CCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321          211 LNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT-LPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL  287 (397)
Q Consensus       211 ~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~-~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L  287 (397)
                      ++|++|++++|.+..+|. .+.++++|++|+++ ++ ....++. .++.+++|+.+++++|.+    ..+ ..+..+++|
T Consensus       147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l----~~~-~~~~~l~~L  220 (452)
T 3zyi_A          147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMCNI----KDM-PNLTPLVGL  220 (452)
T ss_dssp             TTCCEEECCSCCCCEECTTTTTTCTTCCEEECC-CCTTCCEECTTTTTTCTTCCEEECTTSCC----SSC-CCCTTCTTC
T ss_pred             CCCCEEECCCCCcceeCHhHHhcCCcccEEeCC-CCCCccccChhhccCCCCCCEEECCCCcc----ccc-ccccccccc
Confidence            999999999999888886 58899999999999 75 4556665 488899999999999866    333 357788999


Q ss_pred             cEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEE
Q 045321          288 ECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLH  366 (397)
Q Consensus       288 ~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  366 (397)
                      +.|+++++ .+..+.- ++.. +++|++|++++|.+....+..+..+++|+.|+|++|.+...  +......+++|+.|+
T Consensus       221 ~~L~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          221 EELEMSGN-HFPEIRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL--PHDLFTPLRYLVELH  296 (452)
T ss_dssp             CEEECTTS-CCSEECGGGGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC--CTTSSTTCTTCCEEE
T ss_pred             cEEECcCC-cCcccCcccccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc--ChHHhccccCCCEEE
Confidence            99999884 4555432 5677 89999999999998776677789999999999987766532  222246789999999


Q ss_pred             EecCC
Q 045321          367 LKSMY  371 (397)
Q Consensus       367 l~~~~  371 (397)
                      +.+++
T Consensus       297 L~~Np  301 (452)
T 3zyi_A          297 LHHNP  301 (452)
T ss_dssp             CCSSC
T ss_pred             ccCCC
Confidence            98764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=6.1e-20  Score=177.79  Aligned_cols=223  Identities=17%  Similarity=0.149  Sum_probs=182.1

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTI  210 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l  210 (397)
                      .-.++++.|.+.++...     .+ +..|..+++|++|++++|.+..++ ..+.++.+|++|++++|.++.+|. .+..+
T Consensus        61 ~~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  135 (440)
T 3zyj_A           61 GISTNTRLLNLHENQIQ-----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL  135 (440)
T ss_dssp             CCCTTCSEEECCSCCCC-----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred             CCCCCCcEEEccCCcCC-----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence            34578999999999876     34 445599999999999999998665 678999999999999999999886 58899


Q ss_pred             CCCcEEecCCcccccchh-hhhccccCcEEEecCCC-CCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321          211 LNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT-LPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL  287 (397)
Q Consensus       211 ~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~-~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L  287 (397)
                      ++|++|++++|.+..+|. .+.++++|++|+++ ++ ....++. .++.+++|+.+++++|.+    ..++ .+..+++|
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l----~~~~-~~~~l~~L  209 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG-ELKRLSYISEGAFEGLSNLRYLNLAMCNL----REIP-NLTPLIKL  209 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCTTCCEEECC-CCTTCCEECTTTTTTCSSCCEEECTTSCC----SSCC-CCTTCSSC
T ss_pred             ccCceeeCCCCcccccCHHHhhhCcccCEeCCC-CCCCcceeCcchhhcccccCeecCCCCcC----cccc-ccCCCccc
Confidence            999999999999988886 58999999999999 75 4555555 588899999999999866    3343 47888999


Q ss_pred             cEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEE
Q 045321          288 ECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLH  366 (397)
Q Consensus       288 ~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  366 (397)
                      +.|+++++ .++.+.- .+.. +++|++|++++|.+.......+..+++|+.|+|++|.+....  ......+++|+.|+
T Consensus       210 ~~L~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~  285 (440)
T 3zyj_A          210 DELDLSGN-HLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP--HDLFTPLHHLERIH  285 (440)
T ss_dssp             CEEECTTS-CCCEECTTTTTT-CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC--TTTTSSCTTCCEEE
T ss_pred             CEEECCCC-ccCccChhhhcc-CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC--hhHhccccCCCEEE
Confidence            99999984 5665532 5666 899999999999987777778899999999999877665332  22146789999999


Q ss_pred             EecCC
Q 045321          367 LKSMY  371 (397)
Q Consensus       367 l~~~~  371 (397)
                      +.+++
T Consensus       286 L~~Np  290 (440)
T 3zyj_A          286 LHHNP  290 (440)
T ss_dssp             CCSSC
T ss_pred             cCCCC
Confidence            98754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=7.9e-21  Score=189.12  Aligned_cols=129  Identities=16%  Similarity=0.051  Sum_probs=111.1

Q ss_pred             CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCcc-ccCCCC
Q 045321          136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSL-LCTILN  212 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~  212 (397)
                      .++|++|.+.++...     .+ +..|..+++|++|++++|.+..++ ..++++.+|++|++++|.+..+|+. ++++++
T Consensus        25 ~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           25 TAAMKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             CTTCCEEECCSSCCC-----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred             CCCccEEECcCCccC-----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence            478999999999875     33 444599999999999999998665 6799999999999999999988876 999999


Q ss_pred             CcEEecCCccccc--chhhhhccccCcEEEecCCCC-CCCCC-ccccCCCCCcEEEcCCCee
Q 045321          213 LQTLEMPSSYVDH--SLEDIWMMQKLMHLNFGSITL-PAPPK-NYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       213 L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~-~~~~p-~~i~~l~~L~~l~l~~~~L  270 (397)
                      |++|++++|.+..  .|..++++++|++|+++ ++. ...+| ..++++++|+.+++++|.+
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~-~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG-NVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CcEEECCCCcccccchhhhhhccCCccEEECC-CCccccccCHhhhhcccccCeeeccCCcc
Confidence            9999999998775  46779999999999999 775 55666 4789999999999988754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=2.8e-20  Score=183.95  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=55.1

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccc--ccccccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQ--FPLGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~--lp~~~~~l~~  189 (397)
                      ..+++++.+..+......+.  ..+++|++|.+.++...     .++..  .++.|++|++++|.+..  +|..++++++
T Consensus        44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-----KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ  116 (520)
T ss_dssp             CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-----EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred             cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-----ecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence            55677777775544444333  77788888888887664     33222  67778888888887764  5677777777


Q ss_pred             CceEecCCCCCc
Q 045321          190 LKHLKLNIPSLK  201 (397)
Q Consensus       190 L~~L~l~~~~i~  201 (397)
                      |++|++++|.+.
T Consensus       117 L~~L~L~~n~l~  128 (520)
T 2z7x_B          117 LKFLGLSTTHLE  128 (520)
T ss_dssp             CCEEEEEESSCC
T ss_pred             ceEEEecCcccc
Confidence            777777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=1.4e-19  Score=165.00  Aligned_cols=203  Identities=20%  Similarity=0.193  Sum_probs=156.0

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCC-Cccc-CccccC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPS-LKCL-PSLLCT  209 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~-i~~l-p~~~~~  209 (397)
                      ...++++.|.+.++...     .+ +..|..+++|++|++++|.++.+ |..++++++|++|++++|. +..+ |..+..
T Consensus        29 ~~~~~l~~L~l~~n~i~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~  103 (285)
T 1ozn_A           29 GIPAASQRIFLHGNRIS-----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (285)
T ss_dssp             TCCTTCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCCCCceEEEeeCCcCC-----ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence            34568888988888775     34 44458888999999999988866 6778889999999999886 7777 667888


Q ss_pred             CCCCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321          210 ILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL  287 (397)
Q Consensus       210 l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L  287 (397)
                      +++|++|++++|.+..+ |..+..+++|++|+++ ++....+|.. ++.+++|+.+++++|.+   ....+..+..+++|
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGNRI---SSVPERAFRGLHSL  179 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTC
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC-CCcccccCHhHhccCCCccEEECCCCcc---cccCHHHhcCcccc
Confidence            89999999999877777 4558888999999998 8877776654 78889999999988866   23333457788888


Q ss_pred             cEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccccc
Q 045321          288 ECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYL  347 (397)
Q Consensus       288 ~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~  347 (397)
                      +.|+++++ .+..+.. ++.. +++|+.|++++|.+...+...++.+++|+.|++++|.+.
T Consensus       180 ~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          180 DRLLLHQN-RVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CEEECCSS-CCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCC-cccccCHhHccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            88888874 3444422 5566 888899999988876655566888888999988776653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=1.1e-19  Score=185.46  Aligned_cols=272  Identities=17%  Similarity=0.066  Sum_probs=160.6

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~  189 (397)
                      ..+++++.+..+......+.  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.+..+| ..++++++
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN  122 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred             CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-----ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence            45677777764443333333  56777777777777654     34 333477777777777777777554 45777777


Q ss_pred             CceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hh--ccccCcEEEecCCCCCCCCCc-------------
Q 045321          190 LKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IW--MMQKLMHLNFGSITLPAPPKN-------------  252 (397)
Q Consensus       190 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~--~L~~L~~L~l~~~~~~~~~p~-------------  252 (397)
                      |++|++++|.+... |..++++++|++|++++|.+..++.. +.  .+++|++|+++ ++....+++             
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~  201 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS-SNQIKEFSPGCFHAIGRLFGLF  201 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT-TCCCCCBCTTGGGGSSEECEEE
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC-CCcccccChhhhhhhhhhhhhh
Confidence            77777777776543 44566777777777777766655443 22  34566666666 554333221             


Q ss_pred             ---------------------------------------cccCCC--CCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEE
Q 045321          253 ---------------------------------------YSSSLK--NLIFISALNPNLSCYHSGVSNSLLGLHKLECLK  291 (397)
Q Consensus       253 ---------------------------------------~i~~l~--~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~  291 (397)
                                                             .++.++  +|+.+++++|.+   ....+..++.+++|+.|+
T Consensus       202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~  278 (680)
T 1ziw_A          202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL---NVVGNDSFAWLPQLEYFF  278 (680)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC---CEECTTTTTTCTTCCEEE
T ss_pred             ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc---CccCcccccCcccccEee
Confidence                                                   222222  255555555543   223345566677777777


Q ss_pred             eecC-------------CCeeEEEe--------------------ccCCCCCCceEEEEecccCCCCCccccccCcCCce
Q 045321          292 LVNE-------------SKLSRVVL--------------------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQV  338 (397)
Q Consensus       292 l~~~-------------~~L~~L~l--------------------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~  338 (397)
                      ++++             ++|+.+.+                    .+.. +++|++|++++|.+.......++.+++|++
T Consensus       279 L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  357 (680)
T 1ziw_A          279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLKY  357 (680)
T ss_dssp             CCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT-CTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred             CCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc-CCCCCEEECCCCccCCCChhHhccccCCcE
Confidence            7653             35555544                    2334 788899999988887666667888888888


Q ss_pred             EEEecccccCceeEE--------------------------eCCCCCCCCCEEEEecCCCcCcEE-ECCCcccccccccc
Q 045321          339 LKLKQNSYLGRKLAC--------------------------VGSSSFPKLTVLHLKSMYWQDEWT-MGAGAMPKLESLIV  391 (397)
Q Consensus       339 L~L~~~~~~~~~~~~--------------------------~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~i  391 (397)
                      |++++|......++.                          .....+++|+.|+++++.-...++ .....+++|+.|++
T Consensus       358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence            888665432222110                          013345566666666653222222 22345667777776


Q ss_pred             cccc
Q 045321          392 NPCA  395 (397)
Q Consensus       392 ~~C~  395 (397)
                      ++|.
T Consensus       438 s~n~  441 (680)
T 1ziw_A          438 SYNK  441 (680)
T ss_dssp             CSCS
T ss_pred             CCCC
Confidence            6653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=1.1e-19  Score=183.52  Aligned_cols=129  Identities=16%  Similarity=0.072  Sum_probs=102.8

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~  189 (397)
                      +..+++|.+..+.....++.  ..+++|++|.+.++...     .+ +..|.++++|++|+|++|.++.+|. .++++.+
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            56788998885555555444  78899999999988765     45 5556889999999999999888874 5788999


Q ss_pred             CceEecCCCCCcccCc-cccCCCCCcEEecCCccccc--chhhhhccccCcEEEecCCCCCC
Q 045321          190 LKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDH--SLEDIWMMQKLMHLNFGSITLPA  248 (397)
Q Consensus       190 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~  248 (397)
                      |++|++++|.++.+|+ .++++++|++|++++|.+..  +|..++.+++|++|+++ ++...
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~-~N~l~  186 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQ  186 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC-SSCCC
T ss_pred             CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc-Ccccc
Confidence            9999999999888875 47889999999999996654  56778889999999988 66443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=1.5e-19  Score=164.66  Aligned_cols=201  Identities=16%  Similarity=0.094  Sum_probs=167.8

Q ss_pred             CCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcc-cccc-hhhhhccccCcE
Q 045321          163 KFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSY-VDHS-LEDIWMMQKLMH  238 (397)
Q Consensus       163 ~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~-l~~l-p~~~~~L~~L~~  238 (397)
                      ..+.|++|+++++.++.+| ..++++++|++|++++|.+..+ |..++.+++|++|++++|. +..+ |..+..+++|++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            3568999999999999776 5689999999999999999877 7789999999999999995 8888 567999999999


Q ss_pred             EEecCCCCCCCC-CccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEE
Q 045321          239 LNFGSITLPAPP-KNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLS  316 (397)
Q Consensus       239 L~l~~~~~~~~~-p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~  316 (397)
                      |+++ ++....+ |..++.+++|+.+++++|.+   ....+..++.+++|+.|+++++ .++.+.. ++.. +++|++|+
T Consensus       110 L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~  183 (285)
T 1ozn_A          110 LHLD-RCGLQELGPGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRG-LHSLDRLL  183 (285)
T ss_dssp             EECT-TSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTT-CTTCCEEE
T ss_pred             EECC-CCcCCEECHhHhhCCcCCCEEECCCCcc---cccCHhHhccCCCccEEECCCC-cccccCHHHhcC-ccccCEEE
Confidence            9999 8876666 55688999999999999876   3334456889999999999984 5666643 4666 89999999


Q ss_pred             EecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          317 LSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       317 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      +++|.+....+..++.+++|+.|++++|.+..... .. ...+++|+.|++++++
T Consensus       184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EA-LAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HH-HTTCTTCCEEECCSSC
T ss_pred             CCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HH-cccCcccCEEeccCCC
Confidence            99999876667889999999999998877654321 22 5778999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=5.7e-20  Score=172.80  Aligned_cols=244  Identities=17%  Similarity=0.165  Sum_probs=188.3

Q ss_pred             CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccccc-ccCCCC
Q 045321          114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLG-LENLIL  189 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~  189 (397)
                      ...++++.+..+.....+..  ..+++|++|.+.++...     .+ +..|..+++|++|++++|.++.+|.. ++++++
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  125 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-----TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS  125 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-----ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence            45899999985555555553  88999999999999775     34 45459999999999999999988876 899999


Q ss_pred             CceEecCCCCCcccCc--cccCCCCCcEEecCCc-ccccch-hhhhccccCcEEEecCCCCCCCC-CccccCCCCCcEEE
Q 045321          190 LKHLKLNIPSLKCLPS--LLCTILNLQTLEMPSS-YVDHSL-EDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFIS  264 (397)
Q Consensus       190 L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~l~  264 (397)
                      |++|++++|.+..+|.  .++.+++|++|++++| .+..++ ..++.+++|++|+++ ++....+ |..++.+++|+.++
T Consensus       126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID-ASDLQSYEPKSLKSIQNVSHLI  204 (353)
T ss_dssp             CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEECTTTTTTCSEEEEEE
T ss_pred             CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC-CCCcCccCHHHHhccccCCeec
Confidence            9999999999999987  7889999999999999 688875 569999999999999 8875554 77899999999999


Q ss_pred             cCCCeeeEEeccHHhh-hcCCCCCcEEEeecCCCeeEEEe----ccCCCCCCceEEEEecccCCCC----CccccccCcC
Q 045321          265 ALNPNLSCYHSGVSNS-LLGLHKLECLKLVNESKLSRVVL----SKYQFPLSLSHLSLSNTELMQD----PMPIMEKLPR  335 (397)
Q Consensus       265 l~~~~L~i~~~~~~~~-l~~l~~L~~L~l~~~~~L~~L~l----~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~  335 (397)
                      +++|.+    ..++.. +..+++|+.|+++++ .++.+..    .... .+.++.++++.+.+...    .+..++.+++
T Consensus       205 l~~n~l----~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~-~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~  278 (353)
T 2z80_A          205 LHMKQH----ILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGET-NSLIKKFTFRNVKITDESLFQVMKLLNQISG  278 (353)
T ss_dssp             EECSCS----TTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------C-CCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred             CCCCcc----ccchhhhhhhcccccEEECCCC-ccccccccccccccc-cchhhccccccccccCcchhhhHHHHhcccC
Confidence            998865    444443 456899999999985 2221110    1122 66788888888876432    2345678899


Q ss_pred             CceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          336 LQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       336 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      |++|++++|...  .++......+++|+.|++++++
T Consensus       279 L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          279 LLELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCCCC--ccCHHHHhcCCCCCEEEeeCCC
Confidence            999999777664  2333213678899999998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=1.2e-19  Score=189.56  Aligned_cols=248  Identities=18%  Similarity=0.102  Sum_probs=178.0

Q ss_pred             CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCC-cccc-cccccCCCCCceEecCCCCCccc-CccccCC
Q 045321          135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAV-LDQF-PLGLENLILLKHLKLNIPSLKCL-PSLLCTI  210 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l  210 (397)
                      -.+++++|.++++...     .+ +..|.++++|++|++++|. +..+ |..++++++|++|++++|.+..+ |..++++
T Consensus        22 lp~~l~~LdLs~N~i~-----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l   96 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIR-----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL   96 (844)
T ss_dssp             SCTTCCEEEEESCCCC-----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred             CCCCcCEEECCCCcCC-----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence            5689999999999876     33 4445999999999999996 4466 78899999999999999999866 8899999


Q ss_pred             CCCcEEecCCccccc-chhh--hhccccCcEEEecCCCCCCCC--CccccCCCCCcEEEcCCCeeeEEeccHHhhh----
Q 045321          211 LNLQTLEMPSSYVDH-SLED--IWMMQKLMHLNFGSITLPAPP--KNYSSSLKNLIFISALNPNLSCYHSGVSNSL----  281 (397)
Q Consensus       211 ~~L~~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l----  281 (397)
                      ++|++|++++|.+.. +|..  ++++++|++|+++ +|....+  +..++++++|+++++++|.+.   ...+..+    
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls-~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~---~~~~~~l~~l~  172 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS-KNQIRSLYLHPSFGKLNSLKSIDFSSNQIF---LVCEHELEPLQ  172 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE-SCCCCCCCCCGGGGTCSSCCEEEEESSCCC---CCCSGGGHHHH
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECC-CCcccccccchhHhhCCCCCEEECCCCcCC---eeCHHHccccc
Confidence            999999999997765 5655  8999999999999 8876554  356999999999999988542   1111111    


Q ss_pred             ----------------------cCCC------CCcEEEeecC--------------------------------------
Q 045321          282 ----------------------LGLH------KLECLKLVNE--------------------------------------  295 (397)
Q Consensus       282 ----------------------~~l~------~L~~L~l~~~--------------------------------------  295 (397)
                                            +.+.      .|+.|+++++                                      
T Consensus       173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l  252 (844)
T 3j0a_A          173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI  252 (844)
T ss_dssp             HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred             CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence                                  1111      2666666543                                      


Q ss_pred             -------------CCeeEEEe-----------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCcee
Q 045321          296 -------------SKLSRVVL-----------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKL  351 (397)
Q Consensus       296 -------------~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~  351 (397)
                                   ++|+.|.+           .+.. +++|+.|++++|.+....+..++.+++|++|+|++|...... 
T Consensus       253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-  330 (844)
T 3j0a_A          253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-  330 (844)
T ss_dssp             TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-
T ss_pred             CCCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-
Confidence                         23455544           2344 677777777777765555556777777777777666553321 


Q ss_pred             EEeCCCCCCCCCEEEEecCCCcCcEEE-CCCcccccccccccccc
Q 045321          352 ACVGSSSFPKLTVLHLKSMYWQDEWTM-GAGAMPKLESLIVNPCA  395 (397)
Q Consensus       352 ~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L~i~~C~  395 (397)
                      +.. ...+++|+.|+++++ .+..++. ....+++|+.|++++|.
T Consensus       331 ~~~-~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          331 SSN-FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             SCS-CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             HHH-hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence            222 566777888888775 3555532 24557888888887763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=4.7e-20  Score=170.74  Aligned_cols=219  Identities=16%  Similarity=0.062  Sum_probs=179.0

Q ss_pred             hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccC
Q 045321          158 ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKL  236 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L  236 (397)
                      ..++..+++|++|++++|.++.++ ..++++++|++|++++|.+...++ +..+++|++|++++|.+..+|.    .++|
T Consensus        27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L  101 (317)
T 3o53_A           27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSI  101 (317)
T ss_dssp             HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTC
T ss_pred             HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCc
Confidence            566688889999999999998765 689999999999999999987765 9999999999999998888774    4899


Q ss_pred             cEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-cc-CCCCCCceE
Q 045321          237 MHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SK-YQFPLSLSH  314 (397)
Q Consensus       237 ~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~-~~~l~~L~~  314 (397)
                      ++|+++ ++....++..  .+++|+.+++++|.+   ....+..+..+++|+.|++++ ..+..+.. .+ .. +++|++
T Consensus       102 ~~L~l~-~n~l~~~~~~--~~~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~-l~~L~~  173 (317)
T 3o53_A          102 ETLHAA-NNNISRVSCS--RGQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAAS-SDTLEH  173 (317)
T ss_dssp             CEEECC-SSCCSEEEEC--CCSSCEEEECCSSCC---CSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGG-TTTCCE
T ss_pred             CEEECC-CCccCCcCcc--ccCCCCEEECCCCCC---CCccchhhhccCCCCEEECCC-CCCCcccHHHHhhc-cCcCCE
Confidence            999999 8877766543  478999999999977   344455788899999999998 45666543 22 35 799999


Q ss_pred             EEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccc
Q 045321          315 LSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPC  394 (397)
Q Consensus       315 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C  394 (397)
                      |++++|.+...  +....+++|++|++++|...  .++.. ...+++|+.|+++++ .+..++.....+++|+.|+++++
T Consensus       174 L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~--~l~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          174 LNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA--FMGPE-FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             EECTTSCCCEE--ECCCCCTTCCEEECCSSCCC--EECGG-GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred             EECCCCcCccc--ccccccccCCEEECCCCcCC--cchhh-hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence            99999987432  44556999999999877664  33334 567899999999997 57888777778899999999987


Q ss_pred             c
Q 045321          395 A  395 (397)
Q Consensus       395 ~  395 (397)
                      +
T Consensus       248 ~  248 (317)
T 3o53_A          248 G  248 (317)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=2e-20  Score=183.36  Aligned_cols=236  Identities=16%  Similarity=0.083  Sum_probs=187.0

Q ss_pred             CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~  212 (397)
                      ..+++|++|.+.++...     .+ +..|..+++|++|++++|.+...++ ++.+++|++|++++|.+..+|..    ++
T Consensus        31 ~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~  100 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLS-----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PS  100 (487)
T ss_dssp             TTGGGCCEEECCSSCCC-----CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TT
T ss_pred             ccCCCccEEEeeCCcCC-----CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CC
Confidence            44568999999999876     34 5555999999999999999986655 89999999999999999887743    89


Q ss_pred             CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCC-CccccCCCCCcEEEcCCCeeeEEeccHHhhhc-CCCCCcEE
Q 045321          213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFISALNPNLSCYHSGVSNSLL-GLHKLECL  290 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~-~l~~L~~L  290 (397)
                      |++|++++|.+..+|..  .+++|+.|+++ +|....+ |..++.+++|+.+++++|.+   ....+..+. .+++|+.|
T Consensus       101 L~~L~L~~N~l~~~~~~--~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A          101 IETLHAANNNISRVSCS--RGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             CCEEECCSSCCCCEEEC--CCSSCEEEECC-SSCCCSGGGBCGGGGSSEEEEECTTSCC---CEEEGGGGGGGTTTCCEE
T ss_pred             cCEEECcCCcCCCCCcc--ccCCCCEEECC-CCCCCCCCchhhcCCCCCCEEECCCCCC---CCcChHHHhhhCCcccEE
Confidence            99999999988888763  57899999999 8876665 55789999999999999977   344566665 78999999


Q ss_pred             EeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecC
Q 045321          291 KLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM  370 (397)
Q Consensus       291 ~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  370 (397)
                      +++++ .+..+. .... +++|+.|++++|.+.. .++.++.+++|+.|++++|.+.  .++.. ...+++|+.|+++++
T Consensus       175 ~Ls~N-~l~~~~-~~~~-l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~--~lp~~-l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          175 NLQYN-FIYDVK-GQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--LIEKA-LRFSQNLEHFDLRGN  247 (487)
T ss_dssp             ECTTS-CCCEEE-CCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--EECTT-CCCCTTCCEEECTTC
T ss_pred             ecCCC-cccccc-cccc-CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc--ccchh-hccCCCCCEEEcCCC
Confidence            99984 466654 2334 8999999999999854 4456889999999999877765  34444 678899999999997


Q ss_pred             CCc-CcEEECCCccccccccccc
Q 045321          371 YWQ-DEWTMGAGAMPKLESLIVN  392 (397)
Q Consensus       371 ~~l-~~~~~~~~~~p~L~~L~i~  392 (397)
                      +-. ..++.....++.|+.+.+.
T Consensus       248 ~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          248 GFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcCcchHHHHHhCCCCcEEecc
Confidence            643 1333344567778777764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.80  E-value=1.1e-18  Score=174.87  Aligned_cols=218  Identities=15%  Similarity=0.036  Sum_probs=124.9

Q ss_pred             CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321          137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL  216 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L  216 (397)
                      ++|++|.+.++...     .++.   .+++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   .+.+|++|
T Consensus        61 ~~L~~L~L~~N~l~-----~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCS-----CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCCC-----CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence            45555555555443     2221   34555555555555555554   44555555555555555554   34555555


Q ss_pred             ecCCcccccchhhhhccccCcEEEecCCCCCCCCCccc-----------------cCCCCCcEEEcCCCeeeEEeccHHh
Q 045321          217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYS-----------------SSLKNLIFISALNPNLSCYHSGVSN  279 (397)
Q Consensus       217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i-----------------~~l~~L~~l~l~~~~L~i~~~~~~~  279 (397)
                      ++++|.+..+|..   +++|++|+++ +|....+|..+                 ..+++|+.+++++|.+    ..++.
T Consensus       127 ~L~~N~l~~lp~~---l~~L~~L~Ls-~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l----~~l~~  198 (622)
T 3g06_A          127 WIFGNQLTSLPVL---PPGLQELSVS-DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL----ASLPT  198 (622)
T ss_dssp             ECCSSCCSCCCCC---CTTCCEEECC-SSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC----SCCCC
T ss_pred             ECCCCCCCcCCCC---CCCCCEEECc-CCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCC----CCCCC
Confidence            5555555555542   2455555555 55444444322                 2234445555554433    11111


Q ss_pred             hhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCC
Q 045321          280 SLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSF  359 (397)
Q Consensus       280 ~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~  359 (397)
                         .+++|+.|+++++ .++.    +...+++|+.|++++|.+...  +  ..+++|+.|++++|.+...  +    ..+
T Consensus       199 ---~~~~L~~L~L~~N-~l~~----l~~~~~~L~~L~Ls~N~L~~l--p--~~l~~L~~L~Ls~N~L~~l--p----~~~  260 (622)
T 3g06_A          199 ---LPSELYKLWAYNN-RLTS----LPALPSGLKELIVSGNRLTSL--P--VLPSELKELMVSGNRLTSL--P----MLP  260 (622)
T ss_dssp             ---CCTTCCEEECCSS-CCSS----CCCCCTTCCEEECCSSCCSCC--C--CCCTTCCEEECCSSCCSCC--C----CCC
T ss_pred             ---ccchhhEEECcCC-cccc----cCCCCCCCCEEEccCCccCcC--C--CCCCcCcEEECCCCCCCcC--C----ccc
Confidence               1244455555442 2222    122267899999999987542  2  5578999999977766432  1    257


Q ss_pred             CCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          360 PKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       360 ~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      ++|+.|++++| .+..+|.....+++|+.|++.+++
T Consensus       261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            88999999987 577787667788999999998875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=6e-19  Score=159.92  Aligned_cols=200  Identities=20%  Similarity=0.219  Sum_probs=154.9

Q ss_pred             CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccC-ccccCCCC
Q 045321          136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLP-SLLCTILN  212 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~  212 (397)
                      .+++++|.+.++...     .+ +..|..+++|++|++++|.+..++. .++++++|++|++++|.+..++ ..+.++++
T Consensus        27 ~~~l~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (276)
T 2z62_A           27 PFSTKNLDLSFNPLR-----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (276)
T ss_dssp             CTTCCEEECTTCCCC-----EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CCCccEEECCCCccc-----ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence            457999999888775     34 4344889999999999999887654 7889999999999999988766 56889999


Q ss_pred             CcEEecCCcccccchh-hhhccccCcEEEecCCCCCCC--CCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc-
Q 045321          213 LQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAP--PKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE-  288 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~-  288 (397)
                      |++|++++|.+..++. .++.+++|++|+++ ++....  +|..++.+++|+.+++++|.+   ....+..+..+++|+ 
T Consensus       102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~  177 (276)
T 2z62_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKI---QSIYCTDLRVLHQMPL  177 (276)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEECCSSCC---CEECGGGGHHHHTCTT
T ss_pred             ccEEECCCCCccccCchhcccCCCCCEEECc-CCccceecCchhhccCCCCCEEECCCCCC---CcCCHHHhhhhhhccc
Confidence            9999999998888776 58899999999999 877554  688899999999999999866   232333444444444 


Q ss_pred             ---EEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccc
Q 045321          289 ---CLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSY  346 (397)
Q Consensus       289 ---~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~  346 (397)
                         .|++++ ..++.+...... ..+|++|++++|.+...+...++.+++|+.|++++|.+
T Consensus       178 l~l~L~ls~-n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          178 LNLSLDLSL-NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CCEEEECCS-SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             cceeeecCC-CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence               788877 445555432223 55899999999988666666678899999999977765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=5.1e-19  Score=163.07  Aligned_cols=194  Identities=18%  Similarity=0.215  Sum_probs=139.3

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNL  213 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L  213 (397)
                      ..+++|++|.+.++...     .++.+ ..+++|++|++++|.+..++. ++.+++|++|++++|.+..+| .++.+++|
T Consensus        38 ~~l~~L~~L~l~~~~i~-----~l~~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L  109 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVT-----TIEGV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSI  109 (308)
T ss_dssp             HHHHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTC
T ss_pred             HHcCCcCEEEeeCCCcc-----Cchhh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCC
Confidence            34567777777777654     33444 777888888888888877766 778888888888888877775 57788888


Q ss_pred             cEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321          214 QTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV  293 (397)
Q Consensus       214 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~  293 (397)
                      ++|++++|.+..+|. +..+++|++|+++ ++....++. ++.+++|+.+++++|.+    ..++. +..+++|+.|+++
T Consensus       110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~-~n~l~~~~~-l~~l~~L~~L~l~~n~l----~~~~~-l~~l~~L~~L~l~  181 (308)
T 1h6u_A          110 KTLDLTSTQITDVTP-LAGLSNLQVLYLD-LNQITNISP-LAGLTNLQYLSIGNAQV----SDLTP-LANLSKLTTLKAD  181 (308)
T ss_dssp             CEEECTTSCCCCCGG-GTTCTTCCEEECC-SSCCCCCGG-GGGCTTCCEEECCSSCC----CCCGG-GTTCTTCCEEECC
T ss_pred             CEEECCCCCCCCchh-hcCCCCCCEEECC-CCccCcCcc-ccCCCCccEEEccCCcC----CCChh-hcCCCCCCEEECC
Confidence            888888887777765 7788888888888 777666654 77788888888887755    23333 7777888888887


Q ss_pred             cCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321          294 NESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       294 ~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                      ++ .++.+. .+.. +++|++|++++|.+....  .+..+++|+.|++++|.+..
T Consensus       182 ~n-~l~~~~-~l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          182 DN-KISDIS-PLAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             SS-CCCCCG-GGGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CC-ccCcCh-hhcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            64 333322 2444 788888888888764332  47788888888887776544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=5.9e-19  Score=162.65  Aligned_cols=191  Identities=18%  Similarity=0.202  Sum_probs=161.2

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF  241 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l  241 (397)
                      ..+++|++|+++++.+..+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+..+++|++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence            45788999999999999887 68999999999999999999988 999999999999999888887 5899999999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321          242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE  321 (397)
Q Consensus       242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~  321 (397)
                      + +|....++. ++.+++|+.+++++|.+    ..++. +..+++|+.|+++++ .++.+. .+.. +++|+.|++++|.
T Consensus       115 ~-~n~l~~~~~-l~~l~~L~~L~l~~n~l----~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~-l~~L~~L~l~~n~  184 (308)
T 1h6u_A          115 T-STQITDVTP-LAGLSNLQVLYLDLNQI----TNISP-LAGLTNLQYLSIGNA-QVSDLT-PLAN-LSKLTTLKADDNK  184 (308)
T ss_dssp             T-TSCCCCCGG-GTTCTTCCEEECCSSCC----CCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTT-CTTCCEEECCSSC
T ss_pred             C-CCCCCCchh-hcCCCCCCEEECCCCcc----CcCcc-ccCCCCccEEEccCC-cCCCCh-hhcC-CCCCCEEECCCCc
Confidence            9 988777764 99999999999999866    33333 889999999999985 444433 2566 8999999999999


Q ss_pred             CCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          322 LMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       322 l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      +..  .+.+..+++|++|++++|...+..   . ...+++|+.|++++++
T Consensus       185 l~~--~~~l~~l~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          185 ISD--ISPLASLPNLIEVHLKNNQISDVS---P-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CCC--CGGGGGCTTCCEEECTTSCCCBCG---G-GTTCTTCCEEEEEEEE
T ss_pred             cCc--ChhhcCCCCCCEEEccCCccCccc---c-ccCCCCCCEEEccCCe
Confidence            744  334889999999999877765443   2 5789999999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.78  E-value=3.9e-18  Score=165.48  Aligned_cols=119  Identities=15%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321          137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL  216 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L  216 (397)
                      ++|++|.+.++...     .++++ ..++.|++|++++|.++.+|..+   .+|++|++++|.+..+| +++++++|++|
T Consensus       131 ~~L~~L~L~~n~l~-----~lp~~-~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE-----KLPEL-QNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEECCSSCCS-----SCCCC-TTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred             CCCCEEECcCCCCC-----CCccc-CCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEE
Confidence            45555555555443     23332 55666666666666665555432   35666666666666655 46666666666


Q ss_pred             ecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCee
Q 045321          217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L  270 (397)
                      ++++|.+..+|...   ++|++|+++ +|....+| .++.+++|+.+++++|.+
T Consensus       201 ~l~~N~l~~l~~~~---~~L~~L~l~-~n~l~~lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          201 YADNNSLKKLPDLP---LSLESIVAG-NNILEELP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             ECCSSCCSSCCCCC---TTCCEEECC-SSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCcCCCCc---CcccEEECc-CCcCCccc-ccCCCCCCCEEECCCCcC
Confidence            66666555555422   366666666 66555665 366777777777776644

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=5.5e-19  Score=173.08  Aligned_cols=214  Identities=16%  Similarity=0.064  Sum_probs=176.0

Q ss_pred             CCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321          163 KFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF  241 (397)
Q Consensus       163 ~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l  241 (397)
                      .+++|++|++++|.+..++ ..++++++|++|++++|.+...++ ++.+++|++|++++|.+..+|.    .++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            3448999999999998664 689999999999999999987765 9999999999999998888875    389999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccC-CCCCCceEEEEec
Q 045321          242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKY-QFPLSLSHLSLSN  319 (397)
Q Consensus       242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~-~~l~~L~~L~L~~  319 (397)
                      + +|....++..  .+++|+.+++++|.+   ....+..++.+++|+.|+++++ .+..... ++. . +++|+.|+|++
T Consensus       107 ~-~N~l~~~~~~--~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~-l~~L~~L~Ls~  178 (487)
T 3oja_A          107 A-NNNISRVSCS--RGQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAAS-SDTLEHLNLQY  178 (487)
T ss_dssp             C-SSCCCCEEEC--CCSSCEEEECCSSCC---CSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGG-TTTCCEEECTT
T ss_pred             c-CCcCCCCCcc--ccCCCCEEECCCCCC---CCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhh-CCcccEEecCC
Confidence            9 8887776653  578999999999977   4555678889999999999984 5555433 333 5 89999999999


Q ss_pred             ccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          320 TELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       320 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      |.+..  .+....+++|+.|+|++|.+.+  ++.. ...+++|+.|+++++ .+..+|...+.+++|+.|++.+++
T Consensus       179 N~l~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          179 NFIYD--VKGQVVFAKLKTLDLSSNKLAF--MGPE-FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             SCCCE--EECCCCCTTCCEEECCSSCCCE--ECGG-GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             Ccccc--ccccccCCCCCEEECCCCCCCC--CCHh-HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence            99743  3455679999999998877643  3334 678899999999996 577887777788999999999876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=6.8e-20  Score=169.27  Aligned_cols=216  Identities=17%  Similarity=0.135  Sum_probs=157.4

Q ss_pred             eEEEEcCCCCcc--ccccccc-------CCCCCceEecCCCCCc-ccCccc--cCCCCCcEEecCCcccccchhhhhcc-
Q 045321          167 LRLLNLGYAVLD--QFPLGLE-------NLILLKHLKLNIPSLK-CLPSLL--CTILNLQTLEMPSSYVDHSLEDIWMM-  233 (397)
Q Consensus       167 Lr~L~l~~~~i~--~lp~~~~-------~l~~L~~L~l~~~~i~-~lp~~~--~~l~~L~~L~l~~~~l~~lp~~~~~L-  233 (397)
                      |++|+++++.+.  .+|..+.       ++.+|++|++++|.+. .+|..+  +.+++|++|++++|.+..+|..++.+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            777888888875  4666555       6888888888888876 677776  78888888888888777777777777 


Q ss_pred             ----ccCcEEEecCCCCCCCCC-ccccCCCCCcEEEcCCCeeeEEecc--HHhhh--cCCCCCcEEEeecCCCeeEEEe-
Q 045321          234 ----QKLMHLNFGSITLPAPPK-NYSSSLKNLIFISALNPNLSCYHSG--VSNSL--LGLHKLECLKLVNESKLSRVVL-  303 (397)
Q Consensus       234 ----~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~~~--~~~~l--~~l~~L~~L~l~~~~~L~~L~l-  303 (397)
                          ++|++|+++ ++....++ ..++.+++|+++++++|.+   ...  .+..+  ..+++|+.|+++++ .++.+.- 
T Consensus       145 ~~~~~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  219 (312)
T 1wwl_A          145 QWLKPGLKVLSIA-QAHSLNFSCEQVRVFPALSTLDLSDNPE---LGERGLISALCPLKFPTLQVLALRNA-GMETPSGV  219 (312)
T ss_dssp             TTCCTTCCEEEEE-SCSCCCCCTTTCCCCSSCCEEECCSCTT---CHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHH
T ss_pred             HhhcCCCcEEEee-CCCCccchHHHhccCCCCCEEECCCCCc---CcchHHHHHHHhccCCCCCEEECCCC-cCcchHHH
Confidence                788888888 77766665 6788888888888888754   222  34455  78888888888874 3332210 


Q ss_pred             ---ccCCCCCCceEEEEecccCCCCC-ccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEEC
Q 045321          304 ---SKYQFPLSLSHLSLSNTELMQDP-MPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMG  379 (397)
Q Consensus       304 ---~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  379 (397)
                         .+.. +++|++|++++|.+.... .+.+..+++|++|++++|.+.  .++.. .  +++|+.|+++++ .+..++. 
T Consensus       220 ~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~-~--~~~L~~L~Ls~N-~l~~~p~-  291 (312)
T 1wwl_A          220 CSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKG-L--PAKLSVLDLSYN-RLDRNPS-  291 (312)
T ss_dssp             HHHHHHT-TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSS-C--CSEEEEEECCSS-CCCSCCC-
T ss_pred             HHHHHhc-CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhh-c--cCCceEEECCCC-CCCCChh-
Confidence               2234 688999999999876544 355667889999999777765  33322 2  278999999986 4777755 


Q ss_pred             CCcccccccccccccc
Q 045321          380 AGAMPKLESLIVNPCA  395 (397)
Q Consensus       380 ~~~~p~L~~L~i~~C~  395 (397)
                      ...+|+|+.|++++.+
T Consensus       292 ~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          292 PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             TTTSCEEEEEECTTCT
T ss_pred             HhhCCCCCEEeccCCC
Confidence            6678999999888754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=1.6e-18  Score=158.34  Aligned_cols=198  Identities=18%  Similarity=0.039  Sum_probs=139.0

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSLLCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~  212 (397)
                      ..+++++++.+.++...     .++.  .-.+.+++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +.+++
T Consensus         7 ~~l~~l~~l~~~~~~l~-----~ip~--~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~   78 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-----ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV   78 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-----SCCS--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred             cccCCccEEECCCCCCC-----cCCC--CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCc
Confidence            45677888888776654     3321  1135788888888888755 45678888888888888888877664 77888


Q ss_pred             CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEE
Q 045321          213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLK  291 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~  291 (397)
                      |++|++++|.+..+|..+..+++|++|+++ ++....+|+ .++.+++|+.+++++|.+   ....+..+..+++|+.|+
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELYLKGNEL---KTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCSSTTTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEECC-CCcCcccCHHHHcCCCCCCEEECCCCCC---CccChhhcccccCCCEEE
Confidence            888888888888888878888888888888 777777664 477888888888888765   233334456777777777


Q ss_pred             eecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccc
Q 045321          292 LVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSY  346 (397)
Q Consensus       292 l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~  346 (397)
                      +++ ..++.++- .+.. +++|++|++++|.+. ..+..+..+++|+.|+|++|..
T Consensus       155 L~~-N~l~~l~~~~~~~-l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          155 LAN-NNLTELPAGLLNG-LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CTT-SCCSCCCTTTTTT-CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCC-CcCCccCHHHhcC-cCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            776 34444432 2344 677777777777764 4445566667777777766554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=6.9e-19  Score=159.26  Aligned_cols=203  Identities=19%  Similarity=0.187  Sum_probs=113.6

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCcc-ccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSL-LCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~  212 (397)
                      ..+++|+.|.+.++...     .++.+ ..++.|++|++++|.+..++ .++++++|++|++++|.+..+|.. ++.+++
T Consensus        38 ~~l~~L~~L~l~~~~i~-----~~~~l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  110 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-----SVQGI-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTN  110 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             ccccceeeeeeCCCCcc-----ccccc-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence            44556666666665543     22333 55666666666666665543 556666666666666666655543 456666


Q ss_pred             CcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEE
Q 045321          213 LQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECL  290 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L  290 (397)
                      |++|++++|.+..+|.. ++.+++|++|+++ +|....+|+. ++.+++|+.+++++|.+   ....+..          
T Consensus       111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~----------  176 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLA-HNQLQSLPKGVFDKLTNLTELDLSYNQL---QSLPEGV----------  176 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTT----------
T ss_pred             CCEEECCCCcCCccCHHHhccCCCCCEEECC-CCccCccCHHHhccCccCCEEECCCCCc---CccCHHH----------
Confidence            66666666655555544 5566666666666 5555555443 35566666666665533   1111111          


Q ss_pred             EeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecC
Q 045321          291 KLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM  370 (397)
Q Consensus       291 ~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  370 (397)
                                    +.. +++|++|++++|.+.......++.+++|+.|++++|.+         .+.+++|+.|.+..+
T Consensus       177 --------------~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          177 --------------FDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWIN  232 (272)
T ss_dssp             --------------TTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB---------CCCTTTTHHHHHHHH
T ss_pred             --------------hcC-CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc---------cccCcHHHHHHHHHH
Confidence                          233 66666677777766554445566677777777755543         234556666665544


Q ss_pred             CCcCcEEECCC
Q 045321          371 YWQDEWTMGAG  381 (397)
Q Consensus       371 ~~l~~~~~~~~  381 (397)
                      .--..+|...+
T Consensus       233 ~~~g~ip~~~~  243 (272)
T 3rfs_A          233 KHSGVVRNSAG  243 (272)
T ss_dssp             HTGGGBBCTTS
T ss_pred             hCCCcccCccc
Confidence            33333443333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=3.3e-18  Score=154.59  Aligned_cols=195  Identities=23%  Similarity=0.212  Sum_probs=120.9

Q ss_pred             CeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCccc-cCCCCCcE
Q 045321          138 YLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPSLL-CTILNLQT  215 (397)
Q Consensus       138 ~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~  215 (397)
                      +.+++.+.+....     .++.  .-.+.+++|+++++.+..+|. .++++++|++|++++|.+..+|..+ ..+++|++
T Consensus        17 ~~~~l~~~~~~l~-----~ip~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-----AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTEEECTTSCCS-----SCCS--CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred             CCCEEEccCCCCC-----ccCC--CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence            3556666665543     2221  112457777787777776654 5777777888888777777776654 66777888


Q ss_pred             EecCCcccccchhh-hhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321          216 LEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV  293 (397)
Q Consensus       216 L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~  293 (397)
                      |++++|.+..+|.. +..+++|++|+++ ++....+|.. ++.+++|+.+++++|.+   ....+..+..+++|+.|+++
T Consensus        90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           90 LWVTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYLSLGYNEL---QSLPKGVFDKLTSLKELRLY  165 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECC
T ss_pred             EECCCCcCCcCCHhHcccccCCCEEECC-CCccCeeCHHHhCcCcCCCEEECCCCcC---CccCHhHccCCcccceeEec
Confidence            88877777777654 5677778888777 6665555543 56777777777777755   22222335666666666666


Q ss_pred             cCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321          294 NESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS  345 (397)
Q Consensus       294 ~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~  345 (397)
                      ++ .++.+.. .+.. +++|++|++++|.+...+...+..+++|+.|++++|.
T Consensus       166 ~n-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          166 NN-QLKRVPEGAFDK-LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SS-CCSCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CC-cCcEeChhHhcc-CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            53 3333321 2344 5666666666666544444445666666666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=1.5e-18  Score=153.84  Aligned_cols=94  Identities=15%  Similarity=0.063  Sum_probs=50.3

Q ss_pred             eeEEEEcCCCCcccccc-cccCCCCCceEecCCCC-CcccCc-cccCCCCCcEEecCC-cccccchh-hhhccccCcEEE
Q 045321          166 YLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPS-LKCLPS-LLCTILNLQTLEMPS-SYVDHSLE-DIWMMQKLMHLN  240 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~-~~l~~lp~-~~~~L~~L~~L~  240 (397)
                      .|++|+++++.++.+|. .++++++|++|++++|. ++.+|+ .+.++++|++|++++ +.+..+|. .+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555555443 45555566666666554 555543 455555666666655 45555543 355555566666


Q ss_pred             ecCCCCCCCCCccccCCCCCc
Q 045321          241 FGSITLPAPPKNYSSSLKNLI  261 (397)
Q Consensus       241 l~~~~~~~~~p~~i~~l~~L~  261 (397)
                      ++ ++....+|. ++.+++|+
T Consensus       112 l~-~n~l~~lp~-~~~l~~L~  130 (239)
T 2xwt_C          112 IF-NTGLKMFPD-LTKVYSTD  130 (239)
T ss_dssp             EE-EECCCSCCC-CTTCCBCC
T ss_pred             CC-CCCCccccc-cccccccc
Confidence            65 554444443 44444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=2.4e-18  Score=156.01  Aligned_cols=198  Identities=18%  Similarity=0.091  Sum_probs=153.7

Q ss_pred             CeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccch-hhhhccccCcEEEe
Q 045321          165 KYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSL-EDIWMMQKLMHLNF  241 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l  241 (397)
                      +.|++|++++|.++.++. .++++++|++|++++|.+..+|. .+..+++|++|++++|.+..++ ..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            469999999999997765 78999999999999999988765 6899999999999999888877 45899999999999


Q ss_pred             cCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEec-cHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCce----E
Q 045321          242 GSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHS-GVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLS----H  314 (397)
Q Consensus       242 ~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~-~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~----~  314 (397)
                      + ++....++. .++.+++|+.+++++|.+   .. .++..+..+++|+.|+++++ .++.+.. .+.. +++|+    +
T Consensus       108 ~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-l~~L~~l~l~  181 (276)
T 2z62_A          108 V-ETNLASLENFPIGHLKTLKELNVAHNLI---QSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRV-LHQMPLLNLS  181 (276)
T ss_dssp             T-TSCCCCSTTCCCTTCTTCCEEECCSSCC---CCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHH-HHTCTTCCEE
T ss_pred             C-CCCccccCchhcccCCCCCEEECcCCcc---ceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhh-hhhcccccee
Confidence            9 887776665 689999999999999866   22 36788899999999999884 4555432 2222 33444    8


Q ss_pred             EEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          315 LSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       315 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      |++++|.+..... ......+|++|++++|.....  +......+++|+.|++++++
T Consensus       182 L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          182 LDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             EECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCC--CTTTTTTCCSCCEEECCSSC
T ss_pred             eecCCCcccccCc-cccCCCcccEEECCCCceeec--CHhHhcccccccEEEccCCc
Confidence            9999998754333 333445899999977776433  22214678899999999754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=7.6e-18  Score=152.20  Aligned_cols=195  Identities=22%  Similarity=0.158  Sum_probs=108.6

Q ss_pred             eEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCC
Q 045321          167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSI  244 (397)
Q Consensus       167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~  244 (397)
                      .+.++++++.++.+|..+.  .+|++|+++++.+..+|. .+.++++|++|++++|.+..+|.. +..+++|++|+++ +
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT-D   94 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC-S
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC-C
Confidence            4556666666666665443  456666666666665553 456666666666666666666554 3556666666666 5


Q ss_pred             CCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccC
Q 045321          245 TLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTEL  322 (397)
Q Consensus       245 ~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l  322 (397)
                      +....+|.. ++.+++|+.+++++|.+   ....+..+..+++|+.|+++++ .++.+.. .+.. +++|++|++++|.+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQL---KSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDK-LTSLKELRLYNNQL  169 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCcc---CeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccC-CcccceeEecCCcC
Confidence            555555443 45566666666666544   2233344556666666666653 3333322 2344 56666666666665


Q ss_pred             CCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          323 MQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       323 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      .......+..+++|++|++++|.....  +......+++|+.|++.+++
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          170 KRVPEGAFDKLTELKTLKLDNNQLKRV--PEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSC
T ss_pred             cEeChhHhccCCCcCEEECCCCcCCcC--CHHHhccccCCCEEEecCCC
Confidence            444444456666666666655544321  11113445666666666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=1.8e-17  Score=160.85  Aligned_cols=222  Identities=20%  Similarity=0.213  Sum_probs=152.9

Q ss_pred             CCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceE
Q 045321          115 ANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHL  193 (397)
Q Consensus       115 ~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L  193 (397)
                      .+++.+.+..+.... .+. ..+++|++|.+.++...     .++.   ....|++|++++|.++.+| .++++++|++|
T Consensus       131 ~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~-----~lp~---~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-----KLPD---LPPSLEFIAAGNNQLEELP-ELQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-----CCCC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred             CCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCc-----ccCC---CcccccEEECcCCcCCcCc-cccCCCCCCEE
Confidence            578888888444444 346 88999999999998765     2322   2358999999999998887 68899999999


Q ss_pred             ecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEE
Q 045321          194 KLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCY  273 (397)
Q Consensus       194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~  273 (397)
                      ++++|.+..+|...   .+|++|++++|.+..+|. ++.+++|++|+++ ++....+|..   +++|+.+++++|.+   
T Consensus       201 ~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~-~N~l~~l~~~---~~~L~~L~l~~N~l---  269 (454)
T 1jl5_A          201 YADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYAD-NNLLKTLPDL---PPSLEALNVRDNYL---  269 (454)
T ss_dssp             ECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECC-SSCCSSCCSC---CTTCCEEECCSSCC---
T ss_pred             ECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECC-CCcCCccccc---ccccCEEECCCCcc---
Confidence            99999988887643   588999999998888884 8889999999998 8777767653   36788888887754   


Q ss_pred             eccHHhhhcCCCCCcEEEeecC---------CCeeEEEe------ccCCCCCCceEEEEecccCCCCCccccccCcCCce
Q 045321          274 HSGVSNSLLGLHKLECLKLVNE---------SKLSRVVL------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQV  338 (397)
Q Consensus       274 ~~~~~~~l~~l~~L~~L~l~~~---------~~L~~L~l------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~  338 (397)
                       ..++..   .++|+.|+++++         ++|+.|.+      .+...+++|++|++++|.+.. .+.   .+++|++
T Consensus       270 -~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~  341 (454)
T 1jl5_A          270 -TDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLER  341 (454)
T ss_dssp             -SCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred             -cccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc---cCCcCCE
Confidence             223321   356777777663         24555544      122213577777777776543 211   1467777


Q ss_pred             EEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          339 LKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       339 L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      |++++|....  ++   . .+++|+.|++++++
T Consensus       342 L~L~~N~l~~--lp---~-~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          342 LIASFNHLAE--VP---E-LPQNLKQLHVEYNP  368 (454)
T ss_dssp             EECCSSCCSC--CC---C-CCTTCCEEECCSSC
T ss_pred             EECCCCcccc--cc---c-hhhhccEEECCCCC
Confidence            7776655432  11   1 45677777777653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=9.9e-18  Score=169.27  Aligned_cols=127  Identities=17%  Similarity=0.114  Sum_probs=111.7

Q ss_pred             CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCc-cccCCCC
Q 045321          136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPS-LLCTILN  212 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~  212 (397)
                      .++++.|.++++...     .+ +..|.++++|++|+|++|.|+.+|+ +++++++|++|++++|+++.+|. .++++++
T Consensus        51 p~~~~~LdLs~N~i~-----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLR-----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             CTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CcCCCEEEeeCCCCC-----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            358999999999876     55 4555999999999999999998864 68999999999999999999986 4799999


Q ss_pred             CcEEecCCcccccchhh-hhccccCcEEEecCCCCCC--CCCccccCCCCCcEEEcCCC
Q 045321          213 LQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISALNP  268 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~l~l~~~  268 (397)
                      |++|++++|.+..+|.. ++++++|++|+++ ++...  .+|..++.+++|+++++++|
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls-~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCCCChhhhhcCcccCeeccc-cCccccCCCchhhccchhhhhhcccCc
Confidence            99999999999999875 8999999999999 87644  46778899999999999887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=1.3e-19  Score=169.01  Aligned_cols=201  Identities=16%  Similarity=0.101  Sum_probs=137.3

Q ss_pred             CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-c-ccccccCCCCCceEecCCCCCc-ccCccccCCCCC
Q 045321          137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-Q-FPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNL  213 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~-lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L  213 (397)
                      ++++.+.+.++....    ..+.+ ..+++|++|++++|.+. . +|..+..+++|++|++++|.+. ..|..++.+++|
T Consensus        70 ~~l~~L~l~~n~l~~----~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L  144 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQ----PLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL  144 (336)
T ss_dssp             TTCSEEECTTCEECS----CCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred             ccceEEEcCCccccc----cchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence            677888777765542    22334 56788888888888876 2 6777788888888888888766 566777788888


Q ss_pred             cEEecCCc-cccc--chhhhhccccCcEEEecCCC-CCCC--CCccccCCC-CCcEEEcCCCeeeEEeccHHhhhcCCCC
Q 045321          214 QTLEMPSS-YVDH--SLEDIWMMQKLMHLNFGSIT-LPAP--PKNYSSSLK-NLIFISALNPNLSCYHSGVSNSLLGLHK  286 (397)
Q Consensus       214 ~~L~l~~~-~l~~--lp~~~~~L~~L~~L~l~~~~-~~~~--~p~~i~~l~-~L~~l~l~~~~L~i~~~~~~~~l~~l~~  286 (397)
                      ++|++++| .+..  +|..+..+++|++|+++ +| ....  ++..++.++ +|+.+++++|.+.+....++..+..+++
T Consensus       145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~  223 (336)
T 2ast_B          145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLS-WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN  223 (336)
T ss_dssp             SEEECTTCBSCCHHHHHHHHHHCTTCCEEECC-CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC-CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence            88888888 6663  66667788888888888 77 4442  455677777 8888888877322212456666777888


Q ss_pred             CcEEEeecCCCeeEEEe-ccCCCCCCceEEEEeccc-CCCCCccccccCcCCceEEEecc
Q 045321          287 LECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTE-LMQDPMPIMEKLPRLQVLKLKQN  344 (397)
Q Consensus       287 L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~  344 (397)
                      |+.|++++|..+..-.+ .+.. +++|++|++++|. +....+..++++++|+.|+++++
T Consensus       224 L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          224 LVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            88888877653332111 3445 7788888888874 33333445677888888888554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=1.4e-17  Score=152.01  Aligned_cols=196  Identities=17%  Similarity=0.077  Sum_probs=138.9

Q ss_pred             CCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceE
Q 045321          115 ANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHL  193 (397)
Q Consensus       115 ~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L  193 (397)
                      .+++.+.+..+.... ++..-.++++.|.+.++...     .+ +..|..++.|++|++++|.++.++.. +.+++|++|
T Consensus        10 ~~l~~l~~~~~~l~~-ip~~~~~~l~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSCCS-----EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred             CCccEEECCCCCCCc-CCCCCCCCCCEEEcCCCcCC-----ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence            445556555222222 22223367888888888765     33 44458888888888888888877654 778888888


Q ss_pred             ecCCCCCcccCccccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCeee
Q 045321          194 KLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPNLS  271 (397)
Q Consensus       194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~  271 (397)
                      ++++|.+..+|..+..+++|++|++++|.+..+|. .+..+++|++|+++ ++....+|.+ +..+++|+.+++++|.+ 
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~N~l-  160 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKLEKLSLANNNL-  160 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSCC-
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-CCCCCccChhhcccccCCCEEECCCCcC-
Confidence            88888888888888888888888888888887774 47888888888888 7777677665 46788888888888766 


Q ss_pred             EEeccHH-hhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321          272 CYHSGVS-NSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ  324 (397)
Q Consensus       272 i~~~~~~-~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~  324 (397)
                         ..++ ..+..+++|+.|++++ ..++.++-++.. .++|+.+++++|++..
T Consensus       161 ---~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~-~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          161 ---TELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFG-SHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             ---SCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT-TCCCSEEECCSCCBCC
T ss_pred             ---CccCHHHhcCcCCCCEEECCC-CcCCccChhhcc-cccCCeEEeCCCCccC
Confidence               3333 3456788888888877 345544434444 6678888888887643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=6.8e-18  Score=152.68  Aligned_cols=202  Identities=15%  Similarity=0.077  Sum_probs=156.2

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccccccc-ccCCCCCc
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLG-LENLILLK  191 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~L~  191 (397)
                      ...++.+.+. +........ ..+++|++|.+.++...     .++.+ ..+++|++|++++|.++.+|.. ++++++|+
T Consensus        40 l~~L~~L~l~-~~~i~~~~~l~~l~~L~~L~l~~n~l~-----~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           40 LNSIDQIIAN-NSDIKSVQGIQYLPNVRYLALGGNKLH-----DISAL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HTTCCEEECT-TSCCCCCTTGGGCTTCCEEECTTSCCC-----CCGGG-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccceeeeeeC-CCCcccccccccCCCCcEEECCCCCCC-----Cchhh-cCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            5677888777 433333445 78999999999999875     33455 8999999999999999977654 68999999


Q ss_pred             eEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCC
Q 045321          192 HLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNP  268 (397)
Q Consensus       192 ~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~  268 (397)
                      +|++++|.+..+|.. ++.+++|++|++++|.+..+|.. ++.+++|++|+++ +|....+|+. ++.+++|+.+++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC-CCCcCccCHHHhcCCccCCEEECCCC
Confidence            999999999988765 68999999999999988888876 6899999999999 8887777765 688999999999998


Q ss_pred             eeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCc
Q 045321          269 NLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLP  334 (397)
Q Consensus       269 ~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~  334 (397)
                      .+   ....+..+..+++|+.|++++++       +.+. +++|+.|+++.|.+....+..++.++
T Consensus       192 ~l---~~~~~~~~~~l~~L~~L~l~~N~-------~~~~-~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          192 QL---KSVPDGVFDRLTSLQYIWLHDNP-------WDCT-CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CC---SCCCTTTTTTCTTCCEEECCSSC-------BCCC-TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             cC---CccCHHHHhCCcCCCEEEccCCC-------cccc-CcHHHHHHHHHHhCCCcccCcccccC
Confidence            76   33344456777777777777643       2333 66677777766665544555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=8e-18  Score=149.18  Aligned_cols=196  Identities=13%  Similarity=0.073  Sum_probs=138.7

Q ss_pred             CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCC-cccccc-cccCCCCCceEecCC-CCCcccCc-cccC
Q 045321          135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAV-LDQFPL-GLENLILLKHLKLNI-PSLKCLPS-LLCT  209 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~-~~i~~lp~-~~~~  209 (397)
                      -.++++.|.+.++...     .+ +..|..+++|++|++++|. ++.+|. .++++++|++|++++ |.++.+|. .+..
T Consensus        29 ~~~~l~~L~l~~n~l~-----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~  103 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLR-----TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE  103 (239)
T ss_dssp             CCTTCCEEEEESCCCS-----EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred             CCCcccEEEEeCCcce-----EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence            3458999999998875     44 4445899999999999997 887765 788999999999998 89998874 6789


Q ss_pred             CCCCcEEecCCcccccchhhhhccccCc---EEEecCCC-CCCCCCcc-ccCCCCCc-EEEcCCCeeeEEeccHHhhhcC
Q 045321          210 ILNLQTLEMPSSYVDHSLEDIWMMQKLM---HLNFGSIT-LPAPPKNY-SSSLKNLI-FISALNPNLSCYHSGVSNSLLG  283 (397)
Q Consensus       210 l~~L~~L~l~~~~l~~lp~~~~~L~~L~---~L~l~~~~-~~~~~p~~-i~~l~~L~-~l~l~~~~L~i~~~~~~~~l~~  283 (397)
                      +++|++|++++|.+..+|. ++.+++|+   +|+++ ++ ....+|.. ++.+++|+ .+++++|.+    ..++.....
T Consensus       104 l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~-~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l----~~i~~~~~~  177 (239)
T 2xwt_C          104 LPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT-DNPYMTSIPVNAFQGLCNETLTLKLYNNGF----TSVQGYAFN  177 (239)
T ss_dssp             CTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE-SCTTCCEECTTTTTTTBSSEEEEECCSCCC----CEECTTTTT
T ss_pred             CCCCCEEeCCCCCCccccc-cccccccccccEEECC-CCcchhhcCcccccchhcceeEEEcCCCCC----cccCHhhcC
Confidence            9999999999998888987 88888888   99999 87 77777654 78888898 888887754    122222111


Q ss_pred             CCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc-CCCCCccccccC-cCCceEEEecccccCceeEEeCCCCCCC
Q 045321          284 LHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE-LMQDPMPIMEKL-PRLQVLKLKQNSYLGRKLACVGSSSFPK  361 (397)
Q Consensus       284 l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~  361 (397)
                                               .++|++|++++|+ +...+...++.+ ++|+.|++++|.+....     ...|++
T Consensus       178 -------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~-----~~~~~~  227 (239)
T 2xwt_C          178 -------------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-----SKGLEH  227 (239)
T ss_dssp             -------------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC-----CTTCTT
T ss_pred             -------------------------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC-----hhHhcc
Confidence                                     2345555555553 433333445555 66666666554443211     235666


Q ss_pred             CCEEEEecCC
Q 045321          362 LTVLHLKSMY  371 (397)
Q Consensus       362 L~~L~l~~~~  371 (397)
                      |+.|.+.++.
T Consensus       228 L~~L~l~~~~  237 (239)
T 2xwt_C          228 LKELIARNTW  237 (239)
T ss_dssp             CSEEECTTC-
T ss_pred             CceeeccCcc
Confidence            6666666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=6.2e-18  Score=156.10  Aligned_cols=198  Identities=21%  Similarity=0.149  Sum_probs=131.5

Q ss_pred             CCCeeEEEEcCCCCcc-cccccc--cCCCCCceEecCCCCCcccCccccCC-----CCCcEEecCCcccccch-hhhhcc
Q 045321          163 KFKYLRLLNLGYAVLD-QFPLGL--ENLILLKHLKLNIPSLKCLPSLLCTI-----LNLQTLEMPSSYVDHSL-EDIWMM  233 (397)
Q Consensus       163 ~l~~Lr~L~l~~~~i~-~lp~~~--~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~l~~lp-~~~~~L  233 (397)
                      .+++|++|++++|.++ .+|..+  +.+++|++|++++|.+..+|..++.+     ++|++|++++|.+..+| ..++.+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5777888888887776 566665  77778888888887777767766666     77888888877777766 557777


Q ss_pred             ccCcEEEecCCCCCCC---CCccc--cCCCCCcEEEcCCCeeeEEeccHH-hhhcCCCCCcEEEeecCCCeeEEE-e-cc
Q 045321          234 QKLMHLNFGSITLPAP---PKNYS--SSLKNLIFISALNPNLSCYHSGVS-NSLLGLHKLECLKLVNESKLSRVV-L-SK  305 (397)
Q Consensus       234 ~~L~~L~l~~~~~~~~---~p~~i--~~l~~L~~l~l~~~~L~i~~~~~~-~~l~~l~~L~~L~l~~~~~L~~L~-l-~~  305 (397)
                      ++|++|+++ ++....   +|..+  +.+++|+.+++++|.+.- ...++ ..+..+++|+.|+++++ .++... . .+
T Consensus       173 ~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~  249 (312)
T 1wwl_A          173 PALSTLDLS-DNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSC  249 (312)
T ss_dssp             SSCCEEECC-SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCC
T ss_pred             CCCCEEECC-CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhh
Confidence            888888887 665322   23344  677788888887775510 01223 23356778888888764 232211 1 22


Q ss_pred             CCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          306 YQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       306 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      .. +++|++|++++|.+. ..+..+.  ++|++|++++|.+.+.  + . ...+++|+.|++++++
T Consensus       250 ~~-l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~--p-~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          250 DW-PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN--P-S-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CC-CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC--C-C-TTTSCEEEEEECTTCT
T ss_pred             hh-cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC--h-h-HhhCCCCCEEeccCCC
Confidence            33 678888888888875 3444444  7888888877776544  1 2 4677888888888754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=5.3e-19  Score=164.85  Aligned_cols=221  Identities=16%  Similarity=0.127  Sum_probs=173.9

Q ss_pred             CCeeEEEEeCCCCccccccchhHHhcCC--CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcc--cCccccCCCC
Q 045321          137 MYLQSFLNHSSESDHLALIDCENFCEKF--KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKC--LPSLLCTILN  212 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l--~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~  212 (397)
                      ..++.+.+.++...       +..+..+  +.+++|+++++.+...+..+..+.+|++|++++|.+..  +|..+..+++
T Consensus        47 ~~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           47 SLWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK  119 (336)
T ss_dssp             TTSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             hhheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence            45778888776554       3344666  88999999999998777778899999999999998763  8888999999


Q ss_pred             CcEEecCCcccc-cchhhhhccccCcEEEecCCC-CCC--CCCccccCCCCCcEEEcCCC-eeeEEeccHHhhhcCCC-C
Q 045321          213 LQTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSIT-LPA--PPKNYSSSLKNLIFISALNP-NLSCYHSGVSNSLLGLH-K  286 (397)
Q Consensus       213 L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~-~~~--~~p~~i~~l~~L~~l~l~~~-~L~i~~~~~~~~l~~l~-~  286 (397)
                      |++|++++|.+. ..|..++.+++|++|+++ +| ...  .++..++.+++|+.+++++| .+.  ...++..+..++ +
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~-~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~~  196 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS-GCSGFSEFALQTLLSSCSRLDELNLSWCFDFT--EKHVQVAVAHVSET  196 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECT-TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC--HHHHHHHHHHSCTT
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECC-CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC--hHHHHHHHHhcccC
Confidence            999999999666 577889999999999999 88 344  36666888999999999998 662  123677888999 9


Q ss_pred             CcEEEeecCC-Cee--EEEeccCCCCCCceEEEEeccc-CCCCCccccccCcCCceEEEecccc-cCceeEEeCCCCCCC
Q 045321          287 LECLKLVNES-KLS--RVVLSKYQFPLSLSHLSLSNTE-LMQDPMPIMEKLPRLQVLKLKQNSY-LGRKLACVGSSSFPK  361 (397)
Q Consensus       287 L~~L~l~~~~-~L~--~L~l~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~~~~~~~~~  361 (397)
                      |++|++++|. .+.  .+.-.+.. +++|++|++++|. +....+..++.+++|++|++++|.. ....+ .. ...+++
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-l~~~~~  273 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LE-LGEIPT  273 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GG-GGGCTT
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HH-HhcCCC
Confidence            9999999874 332  11113445 8999999999998 6666778899999999999977642 22211 12 467999


Q ss_pred             CCEEEEecC
Q 045321          362 LTVLHLKSM  370 (397)
Q Consensus       362 L~~L~l~~~  370 (397)
                      |+.|++.+|
T Consensus       274 L~~L~l~~~  282 (336)
T 2ast_B          274 LKTLQVFGI  282 (336)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeccCc
Confidence            999999998

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.71  E-value=1.6e-16  Score=159.30  Aligned_cols=218  Identities=18%  Similarity=0.021  Sum_probs=160.5

Q ss_pred             CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321          137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL  216 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L  216 (397)
                      .++++|.+.++...     .++..  -.++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~-----~lp~~--l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-----TLPDC--LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-----CCCSC--CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-----ccChh--hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence            45788888887765     44322  12789999999999999887   57899999999999999987   78999999


Q ss_pred             ecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC-
Q 045321          217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE-  295 (397)
Q Consensus       217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~-  295 (397)
                      ++++|.+..+|.   .+++|+.|+++ +|....+|..   +++|+.+++++|.+    ..++.   .+++|+.|+++++ 
T Consensus       107 ~Ls~N~l~~l~~---~l~~L~~L~L~-~N~l~~lp~~---l~~L~~L~Ls~N~l----~~l~~---~~~~L~~L~L~~N~  172 (622)
T 3g06_A          107 SIFSNPLTHLPA---LPSGLCKLWIF-GNQLTSLPVL---PPGLQELSVSDNQL----ASLPA---LPSELCKLWAYNNQ  172 (622)
T ss_dssp             EECSCCCCCCCC---CCTTCCEEECC-SSCCSCCCCC---CTTCCEEECCSSCC----SCCCC---CCTTCCEEECCSSC
T ss_pred             ECcCCcCCCCCC---CCCCcCEEECC-CCCCCcCCCC---CCCCCEEECcCCcC----CCcCC---ccCCCCEEECCCCC
Confidence            999999999987   67899999999 8888888875   48899999998865    22332   2456677766653 


Q ss_pred             --------CCeeEEEe------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCC
Q 045321          296 --------SKLSRVVL------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPK  361 (397)
Q Consensus       296 --------~~L~~L~l------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~  361 (397)
                              ++|+.|.+      .+...+++|+.|++++|.+... +   ..+++|+.|++++|.+...  +    ..+++
T Consensus       173 l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~L~~l--p----~~l~~  242 (622)
T 3g06_A          173 LTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL-P---ALPSGLKELIVSGNRLTSL--P----VLPSE  242 (622)
T ss_dssp             CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC-C---CCCTTCCEEECCSSCCSCC--C----CCCTT
T ss_pred             CCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccccc-C---CCCCCCCEEEccCCccCcC--C----CCCCc
Confidence                    34455544      1111256777777777765321 1   1247889999977765432  2    45688


Q ss_pred             CCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321          362 LTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       362 L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      |+.|+++++ .+..++.   .+++|+.|++++|.
T Consensus       243 L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          243 LKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             CCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred             CcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence            999999986 5777654   67889999988773

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.71  E-value=7.1e-19  Score=171.13  Aligned_cols=206  Identities=15%  Similarity=0.069  Sum_probs=99.3

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCC----eeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCccc-
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFK----YLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLKCL-  203 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~----~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~~l-  203 (397)
                      ..+++|++|.+.++....   .....++..++    .|++|++++|.+.     .+|..+..+++|++|++++|.+... 
T Consensus        53 ~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  129 (461)
T 1z7x_W           53 RVNPALAELNLRSNELGD---VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  129 (461)
T ss_dssp             HTCTTCCEEECTTCCCHH---HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             HhCCCcCEEeCCCCcCCh---HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence            445566666666555431   01123333343    4666666666654     3455556666666666666655421 


Q ss_pred             Cccc-----cCCCCCcEEecCCccccc-----chhhhhccccCcEEEecCCCCCCCC-Ccccc-----CCCCCcEEEcCC
Q 045321          204 PSLL-----CTILNLQTLEMPSSYVDH-----SLEDIWMMQKLMHLNFGSITLPAPP-KNYSS-----SLKNLIFISALN  267 (397)
Q Consensus       204 p~~~-----~~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~~-p~~i~-----~l~~L~~l~l~~  267 (397)
                      +..+     ...++|++|++++|.+..     ++..+..+++|++|+++ ++..... +..+.     ..++|+.+++++
T Consensus       130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  208 (461)
T 1z7x_W          130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS-NNDINEAGVRVLCQGLKDSPCQLEALKLES  208 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC-SSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred             HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc-CCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence            1111     123456666666664432     34445556666666666 5432211 11111     244666666666


Q ss_pred             CeeeEE-eccHHhhhcCCCCCcEEEeecCCCeeEEEe------ccCCCCCCceEEEEecccCCCC----CccccccCcCC
Q 045321          268 PNLSCY-HSGVSNSLLGLHKLECLKLVNESKLSRVVL------SKYQFPLSLSHLSLSNTELMQD----PMPIMEKLPRL  336 (397)
Q Consensus       268 ~~L~i~-~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l------~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L  336 (397)
                      |.+.-. ...++..+..+++|+.|+++++. +....+      +... +++|++|++++|.+...    ....+..+++|
T Consensus       209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  286 (461)
T 1z7x_W          209 CGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHP-SSRLRTLWIWECGITAKGCGDLCRVLRAKESL  286 (461)
T ss_dssp             SCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTST-TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcC-CCCceEEECcCCCCCHHHHHHHHHHHhhCCCc
Confidence            644100 01245566666777777776531 111000      1223 55666666666655332    12334445666


Q ss_pred             ceEEEeccc
Q 045321          337 QVLKLKQNS  345 (397)
Q Consensus       337 ~~L~L~~~~  345 (397)
                      ++|++++|.
T Consensus       287 ~~L~Ls~n~  295 (461)
T 1z7x_W          287 KELSLAGNE  295 (461)
T ss_dssp             CEEECTTCC
T ss_pred             ceEECCCCC
Confidence            666665444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=6.8e-17  Score=147.52  Aligned_cols=170  Identities=21%  Similarity=0.195  Sum_probs=97.2

Q ss_pred             CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCc
Q 045321          135 SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQ  214 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~  214 (397)
                      .+++|+.|.+.++...     .++.+ ..+++|++|++++|.++.++. ++++++|++|++++|.+..+|. ++.+++|+
T Consensus        44 ~l~~L~~L~l~~~~i~-----~~~~~-~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  115 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-----SVQGI-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLK  115 (291)
T ss_dssp             HHHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred             hcCcccEEEccCCCcc-----cChhH-hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence            4455666666665543     23333 666666667776666666555 6666666777766666666543 66666667


Q ss_pred             EEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeec
Q 045321          215 TLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVN  294 (397)
Q Consensus       215 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~  294 (397)
                      +|++++|.+..++ .+..+++|++|+++ +|....+ +.++.+++|+.+++++|.+    ..++. +..+++|+.|++++
T Consensus       116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~-~n~l~~~-~~l~~l~~L~~L~L~~N~l----~~~~~-l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          116 SLSLEHNGISDIN-GLVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQI----SDIVP-LAGLTKLQNLYLSK  187 (291)
T ss_dssp             EEECTTSCCCCCG-GGGGCTTCCEEECC-SSCCCCC-GGGGGCTTCSEEECCSSCC----CCCGG-GTTCTTCCEEECCS
T ss_pred             EEECCCCcCCCCh-hhcCCCCCCEEEcc-CCcCCcc-hhhccCCCCCEEEccCCcc----ccchh-hcCCCccCEEECCC
Confidence            7776666666653 36666666666666 6655544 4566666666666666644    22222 45555555555554


Q ss_pred             CCCeeEEEeccCCCCCCceEEEEecccCC
Q 045321          295 ESKLSRVVLSKYQFPLSLSHLSLSNTELM  323 (397)
Q Consensus       295 ~~~L~~L~l~~~~~l~~L~~L~L~~~~l~  323 (397)
                      + .++.++ .+.. +++|+.|++++|++.
T Consensus       188 N-~i~~l~-~l~~-l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          188 N-HISDLR-ALAG-LKNLDVLELFSQECL  213 (291)
T ss_dssp             S-CCCBCG-GGTT-CTTCSEEEEEEEEEE
T ss_pred             C-cCCCCh-hhcc-CCCCCEEECcCCccc
Confidence            2 222221 2333 555555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.1e-16  Score=146.05  Aligned_cols=173  Identities=21%  Similarity=0.216  Sum_probs=146.0

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF  241 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l  241 (397)
                      ..+++|+.|+++++.+..++ .++.+++|++|++++|.+..+|. ++.+++|++|++++|.+..+|. ++.+++|++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred             hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence            56788999999999999886 48899999999999999999887 9999999999999998888776 999999999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321          242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE  321 (397)
Q Consensus       242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~  321 (397)
                      + +|....+ +.++.+++|+.+++++|.+    ..+ ..+..+++|+.|+++++ .++.+. .+.. +++|++|++++|.
T Consensus       120 ~-~n~i~~~-~~l~~l~~L~~L~l~~n~l----~~~-~~l~~l~~L~~L~L~~N-~l~~~~-~l~~-l~~L~~L~L~~N~  189 (291)
T 1h6t_A          120 E-HNGISDI-NGLVHLPQLESLYLGNNKI----TDI-TVLSRLTKLDTLSLEDN-QISDIV-PLAG-LTKLQNLYLSKNH  189 (291)
T ss_dssp             T-TSCCCCC-GGGGGCTTCCEEECCSSCC----CCC-GGGGGCTTCSEEECCSS-CCCCCG-GGTT-CTTCCEEECCSSC
T ss_pred             C-CCcCCCC-hhhcCCCCCCEEEccCCcC----Ccc-hhhccCCCCCEEEccCC-ccccch-hhcC-CCccCEEECCCCc
Confidence            9 8877776 5789999999999999866    333 67889999999999985 344432 2566 8999999999998


Q ss_pred             CCCCCccccccCcCCceEEEecccccCc
Q 045321          322 LMQDPMPIMEKLPRLQVLKLKQNSYLGR  349 (397)
Q Consensus       322 l~~~~~~~l~~l~~L~~L~L~~~~~~~~  349 (397)
                      +..  ++.+..+++|+.|++++|.....
T Consensus       190 i~~--l~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          190 ISD--LRALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCB--CGGGTTCTTCSEEEEEEEEEECC
T ss_pred             CCC--ChhhccCCCCCEEECcCCcccCC
Confidence            743  45688999999999988765443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=4.7e-18  Score=170.62  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             CcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCc--EEECCCcccccccccccccc
Q 045321          333 LPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDE--WTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       333 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~p~L~~L~i~~C~  395 (397)
                      +++|++|+|+++...+..++.. ..++++|++|++++|+ +..  ++.....+|+|+.|++++|+
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHH-HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CccceEeeccCCCCCHHHHHHH-HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            4444444444333322222222 3456677777777765 332  12222356777777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.68  E-value=3.5e-16  Score=139.64  Aligned_cols=174  Identities=21%  Similarity=0.165  Sum_probs=98.6

Q ss_pred             eEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCC
Q 045321          167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSI  244 (397)
Q Consensus       167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~  244 (397)
                      .++++++++.++.+|..+.  .++++|+++++.+..++. .++++++|++|++++|.+..++.. +..+++|++|+++ +
T Consensus        16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~   92 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-N   92 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-T
T ss_pred             CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC-C
Confidence            4455666666665555444  356666666666554433 455566666666666655554433 5556666666666 5


Q ss_pred             CCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccC
Q 045321          245 TLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTEL  322 (397)
Q Consensus       245 ~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l  322 (397)
                      +....+|. .++.+++|+.+++++|.+   ....+..+..+++|+.|+++++ .++.+.- .+.. +++|++|++++|.+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l  167 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQL---KSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDK-LTNLQTLSLSTNQL  167 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcC---CCcChhHhccCCcccEEECcCC-cCCccCHHHcCc-CcCCCEEECCCCcC
Confidence            55444443 245566666666665544   1222223455556666665552 3333322 2444 67777777777777


Q ss_pred             CCCCccccccCcCCceEEEecccccC
Q 045321          323 MQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       323 ~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                      .......+..+++|+.|++++|.+..
T Consensus       168 ~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          168 QSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CccCHHHHhCCCCCCEEEeeCCceeC
Confidence            65555567777888888887666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.68  E-value=2.4e-18  Score=167.36  Aligned_cols=229  Identities=16%  Similarity=0.076  Sum_probs=105.0

Q ss_pred             CCeeEEEEcCCCCccc-----ccccccCCCCCceEecCCCCCccc-Ccccc-----CCCCCcEEecCCccccc-----ch
Q 045321          164 FKYLRLLNLGYAVLDQ-----FPLGLENLILLKHLKLNIPSLKCL-PSLLC-----TILNLQTLEMPSSYVDH-----SL  227 (397)
Q Consensus       164 l~~Lr~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~-----~l~~L~~L~l~~~~l~~-----lp  227 (397)
                      .+.|++|++++|.++.     ++..+..+++|++|++++|.+... +..+.     ..++|++|++++|.+..     +|
T Consensus       141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  220 (461)
T 1z7x_W          141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC  220 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence            3345555555555441     233444445555555555544321 11111     23355555555554433     34


Q ss_pred             hhhhccccCcEEEecCCCCCCCC-----Ccc-ccCCCCCcEEEcCCCeeeEE-eccHHhhhcCCCCCcEEEeecCCCeeE
Q 045321          228 EDIWMMQKLMHLNFGSITLPAPP-----KNY-SSSLKNLIFISALNPNLSCY-HSGVSNSLLGLHKLECLKLVNESKLSR  300 (397)
Q Consensus       228 ~~~~~L~~L~~L~l~~~~~~~~~-----p~~-i~~l~~L~~l~l~~~~L~i~-~~~~~~~l~~l~~L~~L~l~~~~~L~~  300 (397)
                      ..+..+++|++|+++ +|.....     .+. ...+++|+.+++++|.+.-. ...++..+..+++|+.|+++++. +..
T Consensus       221 ~~l~~~~~L~~L~Ls-~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~  298 (461)
T 1z7x_W          221 GIVASKASLRELALG-SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGD  298 (461)
T ss_dssp             HHHHHCTTCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHH
T ss_pred             HHHHhCCCccEEecc-CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-Cch
Confidence            445555555555555 4432211     011 12355555555555533100 01144455555666666665531 100


Q ss_pred             EEe-----ccCCCCCCceEEEEecccCCCCC----ccccccCcCCceEEEecccccCceeEEe--CC-CCCCCCCEEEEe
Q 045321          301 VVL-----SKYQFPLSLSHLSLSNTELMQDP----MPIMEKLPRLQVLKLKQNSYLGRKLACV--GS-SSFPKLTVLHLK  368 (397)
Q Consensus       301 L~l-----~~~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~~--~~-~~~~~L~~L~l~  368 (397)
                      ...     .+....++|++|++++|.+....    +..+..+++|++|++++|...+......  +. ...++|++|+++
T Consensus       299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  378 (461)
T 1z7x_W          299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  378 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence            000     11110357777777777654332    2334556777777776655433221100  01 124577777777


Q ss_pred             cCCCcC-----cEEECCCcccccccccccccc
Q 045321          369 SMYWQD-----EWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       369 ~~~~l~-----~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      +|. +.     .++.....+|+|++|++++|+
T Consensus       379 ~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          379 DCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            663 33     233223345667777666653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.67  E-value=3.6e-18  Score=162.46  Aligned_cols=234  Identities=15%  Similarity=0.081  Sum_probs=126.9

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc----cccccc-------cCCCCCceEecCCCCCcc
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD----QFPLGL-------ENLILLKHLKLNIPSLKC  202 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~----~lp~~~-------~~l~~L~~L~l~~~~i~~  202 (397)
                      ..+++|++|.+.++.........+...+..+++|++|++++|.+.    .+|..+       ..+++|++|++++|.+..
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            455667777777665542111122222356777777777776443    233333       566777777777776654


Q ss_pred             -----cCccccCCCCCcEEecCCccccc-----chhhhhcc---------ccCcEEEecCCCCCC--CCC---ccccCCC
Q 045321          203 -----LPSLLCTILNLQTLEMPSSYVDH-----SLEDIWMM---------QKLMHLNFGSITLPA--PPK---NYSSSLK  258 (397)
Q Consensus       203 -----lp~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~L---------~~L~~L~l~~~~~~~--~~p---~~i~~l~  258 (397)
                           +|..+..+++|++|++++|.+..     ++..+..+         ++|++|+++ +|...  .+|   ..++.++
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-RNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC-SSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC-CCCCCcHHHHHHHHHHHhCC
Confidence                 56666677777777777775432     33334444         677777776 65432  233   3455666


Q ss_pred             CCcEEEcCCCeeeEE-eccHHh-hhcCCCCCcEEEeecCCCe-----eEEEeccCCCCCCceEEEEecccCCCC----Cc
Q 045321          259 NLIFISALNPNLSCY-HSGVSN-SLLGLHKLECLKLVNESKL-----SRVVLSKYQFPLSLSHLSLSNTELMQD----PM  327 (397)
Q Consensus       259 ~L~~l~l~~~~L~i~-~~~~~~-~l~~l~~L~~L~l~~~~~L-----~~L~l~~~~~l~~L~~L~L~~~~l~~~----~~  327 (397)
                      +|+.+++++|.+.-. ...+.. .+..+++|+.|+++++. +     ..+.-++.. +++|++|+|++|.+...    .+
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHcc-CCCcCEEECCCCCCchhhHHHHH
Confidence            777777776644100 001222 56666777777776642 2     111113444 66677777777765332    12


Q ss_pred             ccc--ccCcCCceEEEecccccCc---eeEEeCC-CCCCCCCEEEEecCC
Q 045321          328 PIM--EKLPRLQVLKLKQNSYLGR---KLACVGS-SSFPKLTVLHLKSMY  371 (397)
Q Consensus       328 ~~l--~~l~~L~~L~L~~~~~~~~---~~~~~~~-~~~~~L~~L~l~~~~  371 (397)
                      ..+  +.+++|++|+|++|.+...   .++.. . ..+++|+.|++++++
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~-l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTV-IDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH-HHHHCTTCCEEECTTSB
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHH-HHhcCCCceEEEccCCc
Confidence            233  2366777777765554431   11111 1 335677777776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.66  E-value=2.7e-18  Score=163.30  Aligned_cols=233  Identities=14%  Similarity=0.059  Sum_probs=171.5

Q ss_pred             chhHHhcCCCeeEEEEcCCCCccc-----ccccccCCCCCceEecCCCCCc----ccCccc-------cCCCCCcEEecC
Q 045321          156 DCENFCEKFKYLRLLNLGYAVLDQ-----FPLGLENLILLKHLKLNIPSLK----CLPSLL-------CTILNLQTLEMP  219 (397)
Q Consensus       156 ~l~~~~~~l~~Lr~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~i~----~lp~~~-------~~l~~L~~L~l~  219 (397)
                      .+...+..+++|++|++++|.+..     ++..+..+++|++|+++++.+.    .+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            343333888999999999999873     4456788999999999997654    345444       789999999999


Q ss_pred             Cccccc-----chhhhhccccCcEEEecCCCCCC-----CCCccccCC---------CCCcEEEcCCCeeeEEeccHH--
Q 045321          220 SSYVDH-----SLEDIWMMQKLMHLNFGSITLPA-----PPKNYSSSL---------KNLIFISALNPNLSCYHSGVS--  278 (397)
Q Consensus       220 ~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~-----~~p~~i~~l---------~~L~~l~l~~~~L~i~~~~~~--  278 (397)
                      +|.+..     +|..+..+++|++|+++ +|...     .++..+..+         ++|+.+++++|.+.  ...++  
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~l  179 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--NGSMKEW  179 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECC-SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT--GGGHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECc-CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC--cHHHHHH
Confidence            997766     88889999999999999 87643     222334444         89999999998662  13334  


Q ss_pred             -hhhcCCCCCcEEEeecCCCeeE-----EEe-ccCCCCCCceEEEEecccCC----CCCccccccCcCCceEEEeccccc
Q 045321          279 -NSLLGLHKLECLKLVNESKLSR-----VVL-SKYQFPLSLSHLSLSNTELM----QDPMPIMEKLPRLQVLKLKQNSYL  347 (397)
Q Consensus       279 -~~l~~l~~L~~L~l~~~~~L~~-----L~l-~~~~~l~~L~~L~L~~~~l~----~~~~~~l~~l~~L~~L~L~~~~~~  347 (397)
                       ..+..+++|+.|++++| .+..     +.- ++.. +++|++|+|++|.+.    ...+..+..+++|++|+|++|.+.
T Consensus       180 ~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          180 AKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             HHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             HHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence             57788999999999985 3331     100 3445 899999999999874    233456788999999999877764


Q ss_pred             Ccee---EEeCC--CCCCCCCEEEEecCCCcCc-----EEECC-Ccccccccccccccc
Q 045321          348 GRKL---ACVGS--SSFPKLTVLHLKSMYWQDE-----WTMGA-GAMPKLESLIVNPCA  395 (397)
Q Consensus       348 ~~~~---~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~p~L~~L~i~~C~  395 (397)
                      ....   +.. .  +.+++|+.|++++|. +..     ++... ..+|+|+.|++++|+
T Consensus       258 ~~~~~~l~~~-l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          258 ARGAAAVVDA-FSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHH-HHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhhHHHHHHH-HhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            4311   111 2  448999999999975 554     44333 457999999999885

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=2.6e-16  Score=157.37  Aligned_cols=179  Identities=20%  Similarity=0.192  Sum_probs=115.2

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNL  213 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L  213 (397)
                      ..+++|+.|.+.++...     .++.+ ..+++|+.|+|++|.+..+|+ ++.+++|++|++++|.+..+| .++.+++|
T Consensus        40 ~~L~~L~~L~l~~n~i~-----~l~~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L  111 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIK-----SVQGI-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKL  111 (605)
T ss_dssp             HHHTTCCCCBCTTCCCC-----CCTTG-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred             hcCCCCCEEECcCCCCC-----CChHH-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence            34556666666666554     33444 677777777777777776655 677777777777777777665 57777777


Q ss_pred             cEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321          214 QTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV  293 (397)
Q Consensus       214 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~  293 (397)
                      ++|++++|.+..+|. +..+++|+.|+++ +|....+ ..++.+++|+.|++++|.+    ..++. +..+++|+.|+++
T Consensus       112 ~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls-~N~l~~l-~~l~~l~~L~~L~Ls~N~l----~~~~~-l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          112 KSLSLEHNGISDING-LVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQI----SDIVP-LAGLTKLQNLYLS  183 (605)
T ss_dssp             CEEECTTSCCCCCGG-GGGCTTCSEEECC-SSCCCCC-GGGGSCTTCSEEECCSSCC----CCCGG-GTTCTTCCEEECC
T ss_pred             CEEEecCCCCCCCcc-ccCCCccCEEECC-CCccCCc-hhhcccCCCCEEECcCCcC----CCchh-hccCCCCCEEECc
Confidence            777777776666643 6777777777777 6665555 4677777777777777655    22222 6666777777776


Q ss_pred             cCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccc
Q 045321          294 NESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIME  331 (397)
Q Consensus       294 ~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~  331 (397)
                      +| .+..++ .+.. +++|+.|+|++|.+...+...+.
T Consensus       184 ~N-~i~~l~-~l~~-l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          184 KN-HISDLR-ALAG-LKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             SS-CCCBCG-GGTT-CTTCSEEECCSEEEECCCCCCCS
T ss_pred             CC-CCCCCh-HHcc-CCCCCEEEccCCcCcCCcccccc
Confidence            63 333332 3455 67777777777766544443333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=1.9e-16  Score=145.89  Aligned_cols=220  Identities=15%  Similarity=0.093  Sum_probs=114.6

Q ss_pred             CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccc--cCCCCCceEecCCCCCcc-cC----cccc
Q 045321          137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGL--ENLILLKHLKLNIPSLKC-LP----SLLC  208 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~--~~l~~L~~L~l~~~~i~~-lp----~~~~  208 (397)
                      ..++.+.+.+..........+..+ ..++.|++|++++|.+. ..|..+  +.+.+|++|++++|.+.. .|    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            345556665554432111112222 23455777888777766 455555  777778888887777663 22    2334


Q ss_pred             CCCCCcEEecCCcccccch-hhhhccccCcEEEecCCCCCCC---CC--ccccCCCCCcEEEcCCCeeeEEeccHHh---
Q 045321          209 TILNLQTLEMPSSYVDHSL-EDIWMMQKLMHLNFGSITLPAP---PK--NYSSSLKNLIFISALNPNLSCYHSGVSN---  279 (397)
Q Consensus       209 ~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~---~p--~~i~~l~~L~~l~l~~~~L~i~~~~~~~---  279 (397)
                      .+++|++|++++|.+..+| ..++.+++|++|+++ ++....   ++  ..++.+++|+++++++|.+    ..++.   
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l----~~l~~~~~  217 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS-DNPGLGERGLMAALCPHKFPAIQNLALRNTGM----ETPTGVCA  217 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC-SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC----CCHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC-CCCCccchhhhHHHhhhcCCCCCEEECCCCCC----CchHHHHH
Confidence            5777777777777666655 346777777777777 654322   22  2235677777777777654    22222   


Q ss_pred             -hhcCCCCCcEEEeecCCCeeEE-EeccCCC--CCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeC
Q 045321          280 -SLLGLHKLECLKLVNESKLSRV-VLSKYQF--PLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVG  355 (397)
Q Consensus       280 -~l~~l~~L~~L~l~~~~~L~~L-~l~~~~~--l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~  355 (397)
                       .++.+++|+.|+++++ .++.+ +-.+..+  +++|++|++++|.+. ..+..+.  ++|++|+|++|...+..  .  
T Consensus       218 ~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~--  289 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--Q--  289 (310)
T ss_dssp             HHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--C--
T ss_pred             HHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--h--
Confidence             1345555555555542 12221 0011110  245555555555543 2222222  45555555544443321  0  


Q ss_pred             CCCCCCCCEEEEecC
Q 045321          356 SSSFPKLTVLHLKSM  370 (397)
Q Consensus       356 ~~~~~~L~~L~l~~~  370 (397)
                      ...+++|+.|+++++
T Consensus       290 ~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          290 PDELPEVDNLTLDGN  304 (310)
T ss_dssp             TTSCCCCSCEECSST
T ss_pred             hhhCCCccEEECcCC
Confidence            234455555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=4.4e-16  Score=155.74  Aligned_cols=173  Identities=20%  Similarity=0.214  Sum_probs=144.9

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF  241 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l  241 (397)
                      ..++.|+.|+++++.+..+| .++.+++|++|++++|.+..+|+ ++.+++|++|++++|.+..+| .+..+++|++|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence            56788999999999998886 58999999999999999998887 899999999999999888877 5899999999999


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321          242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE  321 (397)
Q Consensus       242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~  321 (397)
                      + +|....+ +.++.+++|+.|++++|.+    ..+ ..+..+++|+.|++++| .+..+. .+.. +++|+.|+|++|.
T Consensus       117 s-~N~l~~l-~~l~~l~~L~~L~Ls~N~l----~~l-~~l~~l~~L~~L~Ls~N-~l~~~~-~l~~-l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          117 E-HNGISDI-NGLVHLPQLESLYLGNNKI----TDI-TVLSRLTKLDTLSLEDN-QISDIV-PLAG-LTKLQNLYLSKNH  186 (605)
T ss_dssp             T-TSCCCCC-GGGGGCTTCSEEECCSSCC----CCC-GGGGSCTTCSEEECCSS-CCCCCG-GGTT-CTTCCEEECCSSC
T ss_pred             c-CCCCCCC-ccccCCCccCEEECCCCcc----CCc-hhhcccCCCCEEECcCC-cCCCch-hhcc-CCCCCEEECcCCC
Confidence            9 8877766 4689999999999999876    233 67889999999999885 344332 2566 8999999999998


Q ss_pred             CCCCCccccccCcCCceEEEecccccCc
Q 045321          322 LMQDPMPIMEKLPRLQVLKLKQNSYLGR  349 (397)
Q Consensus       322 l~~~~~~~l~~l~~L~~L~L~~~~~~~~  349 (397)
                      +..  ++.+..+++|+.|+|++|.+...
T Consensus       187 i~~--l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          187 ISD--LRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCB--CGGGTTCTTCSEEECCSEEEECC
T ss_pred             CCC--ChHHccCCCCCEEEccCCcCcCC
Confidence            743  46789999999999987766443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=4.1e-16  Score=133.90  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=100.6

Q ss_pred             cCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCC-CCccccCCCCCcEE
Q 045321          185 ENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAP-PKNYSSSLKNLIFI  263 (397)
Q Consensus       185 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~l  263 (397)
                      +.+++|++|+++++.+..+| .+..+++|++|++++|.+..++ .+..+++|++|+++ ++.... .|..++.+++|+.+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEE
Confidence            45566677777776666666 5666777777777777555554 46667777777777 665443 45667777777777


Q ss_pred             EcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEec
Q 045321          264 SALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQ  343 (397)
Q Consensus       264 ~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~  343 (397)
                      ++++|.+   ....+..++.+++|+.|++++|..+..++ .+.. +++|++|++++|.+..  ++.+..+++|+.|++++
T Consensus       118 ~Ls~n~i---~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~-l~~L~~L~l~~n~i~~--~~~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          118 DISHSAH---DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKT-LPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFS  190 (197)
T ss_dssp             ECCSSBC---BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGG-CSSCCEEECTTBCCCC--CTTGGGCSSCCEEEECB
T ss_pred             EecCCcc---CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcC-CCCCCEEECCCCCCcC--hHHhccCCCCCEEEeeC
Confidence            7777755   34456677777777777777654344443 3455 7788888888887643  33677888888888866


Q ss_pred             ccc
Q 045321          344 NSY  346 (397)
Q Consensus       344 ~~~  346 (397)
                      |.+
T Consensus       191 N~i  193 (197)
T 4ezg_A          191 QTI  193 (197)
T ss_dssp             C--
T ss_pred             ccc
Confidence            654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.64  E-value=3.4e-17  Score=164.32  Aligned_cols=276  Identities=10%  Similarity=0.030  Sum_probs=147.5

Q ss_pred             CCCeEEEEEEeCccchhhcc--CC-CC-CeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccc-----ccccc
Q 045321          114 LANVKRCFILEDLIEFIFLE--QS-GM-YLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQ-----FPLGL  184 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~--~~-~~-~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~-----lp~~~  184 (397)
                      ...+++|.+..+...+....  .. ++ +|++|.+.++....  ...+..+...+++|++|++++|.+..     ++...
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            45677777774433222211  22 33 38888877765211  12334444677888888888887542     33344


Q ss_pred             cCCCCCceEecCCCCCc-----ccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCC-------------
Q 045321          185 ENLILLKHLKLNIPSLK-----CLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITL-------------  246 (397)
Q Consensus       185 ~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~-------------  246 (397)
                      ..+++|++|+++++.+.     .++..+.++++|++|++++|.+..+|..+..+++|++|+++ .+.             
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG-SLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC-BCCCCTTCTTSSSCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc-ccccccchHHHHHHhh
Confidence            56778888888877764     34555567788888888888777777777777788887775 321             


Q ss_pred             --------------CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeec-------------CCCee
Q 045321          247 --------------PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVN-------------ESKLS  299 (397)
Q Consensus       247 --------------~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~-------------~~~L~  299 (397)
                                    ...+|..+..+++|+.+++++|.+  ....+...+..+++|+.|++..             +++|+
T Consensus       268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l--~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL--ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC--CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred             ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC--CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence                          222333344455666666665532  1122333455666666666642             24555


Q ss_pred             EEEecc-----------CC-----------CCCCceEEEEecccCCCCCcccccc-CcCCceEEEec----ccccCc---
Q 045321          300 RVVLSK-----------YQ-----------FPLSLSHLSLSNTELMQDPMPIMEK-LPRLQVLKLKQ----NSYLGR---  349 (397)
Q Consensus       300 ~L~l~~-----------~~-----------~l~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~----~~~~~~---  349 (397)
                      +|.+.-           ..           .+++|++|+++.+.+....+..++. +++|+.|++++    +...+.   
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            554431           00           0455555555544443333334433 55666666642    112111   


Q ss_pred             -eeEEeCCCCCCCCCEEEEecCCC-cCc--EEECCCcccccccccccccc
Q 045321          350 -KLACVGSSSFPKLTVLHLKSMYW-QDE--WTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       350 -~~~~~~~~~~~~L~~L~l~~~~~-l~~--~~~~~~~~p~L~~L~i~~C~  395 (397)
                       .+... ..++++|+.|++++|.+ +..  +......+|+|+.|++.+|.
T Consensus       426 ~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~  474 (592)
T 3ogk_B          426 NGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG  474 (592)
T ss_dssp             HHHHHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred             HHHHHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence             01111 22356666666655432 111  00111236777777777663

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=1.8e-16  Score=146.10  Aligned_cols=200  Identities=17%  Similarity=0.087  Sum_probs=127.8

Q ss_pred             CCCCeeEEEEeCCCCccccccchhHHh--cCCCeeEEEEcCCCCccc-cc----ccccCCCCCceEecCCCCCcccC-cc
Q 045321          135 SGMYLQSFLNHSSESDHLALIDCENFC--EKFKYLRLLNLGYAVLDQ-FP----LGLENLILLKHLKLNIPSLKCLP-SL  206 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l~~~~--~~l~~Lr~L~l~~~~i~~-lp----~~~~~l~~L~~L~l~~~~i~~lp-~~  206 (397)
                      ..++|+.|.+.++....    ..+..+  ..++.|++|++++|.+.. .|    ..+..+++|++|++++|.+..+| ..
T Consensus        89 ~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  164 (310)
T 4glp_A           89 AYSRLKELTLEDLKITG----TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ  164 (310)
T ss_dssp             HHSCCCEEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred             ccCceeEEEeeCCEecc----chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence            34557777777776542    222222  567777777777777663 12    23446777777777777776554 45


Q ss_pred             ccCCCCCcEEecCCccccc---chhh--hhccccCcEEEecCCCCCCCCCcc----ccCCCCCcEEEcCCCeeeEEeccH
Q 045321          207 LCTILNLQTLEMPSSYVDH---SLED--IWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISALNPNLSCYHSGV  277 (397)
Q Consensus       207 ~~~l~~L~~L~l~~~~l~~---lp~~--~~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~l~l~~~~L~i~~~~~  277 (397)
                      ++.+++|++|++++|.+..   ++..  ++.+++|++|+++ +|....++..    ++.+++|+++++++|.+   ....
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l---~~~~  240 (310)
T 4glp_A          165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR-NTGMETPTGVCAALAAAGVQPHSLDLSHNSL---RATV  240 (310)
T ss_dssp             CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC-SSCCCCHHHHHHHHHHHTCCCSSEECTTSCC---CCCC
T ss_pred             hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC-CCCCCchHHHHHHHHhcCCCCCEEECCCCCC---Cccc
Confidence            6677777777777775433   3322  3567777777777 6666555442    35667777777777765   2333


Q ss_pred             HhhhcCC---CCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321          278 SNSLLGL---HKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       278 ~~~l~~l---~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                      |..+..+   ++|+.|+++++ .++.++-  .- +++|++|++++|.+...  +.+..+++|+.|++++|.+..
T Consensus       241 p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~--~~-~~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          241 NPSAPRCMWSSALNSLNLSFA-GLEQVPK--GL-PAKLRVLDLSSNRLNRA--PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCCSSCCCCTTCCCEECCSS-CCCSCCS--CC-CSCCSCEECCSCCCCSC--CCTTSCCCCSCEECSSTTTSC
T ss_pred             hhhHHhccCcCcCCEEECCCC-CCCchhh--hh-cCCCCEEECCCCcCCCC--chhhhCCCccEEECcCCCCCC
Confidence            4445554   57777777763 3443321  12 57999999999987533  347888999999998887654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.63  E-value=5e-17  Score=163.12  Aligned_cols=127  Identities=15%  Similarity=0.112  Sum_probs=83.9

Q ss_pred             CCCeEEEEEEeCccchhhcc---CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccc-----cccccc
Q 045321          114 LANVKRCFILEDLIEFIFLE---QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQ-----FPLGLE  185 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~---~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~-----lp~~~~  185 (397)
                      ..+++++.+..+...+....   ..+++|++|.+.++....  ...++.++..+++|++|++++|.++.     ++....
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            45788888885443332222   368899999998874321  11245665688999999999888652     333334


Q ss_pred             CCCCCceEecCCCC--Cc--ccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEec
Q 045321          186 NLILLKHLKLNIPS--LK--CLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFG  242 (397)
Q Consensus       186 ~l~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~  242 (397)
                      .+++|++|+++++.  +.  .++.-+..+++|++|++++| .+..+|..+.++++|++|+++
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            67789999988875  21  23333455788888888888 666677667777777777644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=2e-16  Score=149.12  Aligned_cols=234  Identities=14%  Similarity=0.083  Sum_probs=128.6

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCC-eeEEEEcCCCCcccc-cccccCC-----CCCceEecCCCCCcccCcc
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFK-YLRLLNLGYAVLDQF-PLGLENL-----ILLKHLKLNIPSLKCLPSL  206 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~-~Lr~L~l~~~~i~~l-p~~~~~l-----~~L~~L~l~~~~i~~lp~~  206 (397)
                      ...++|++|.+.++.........+...+..++ .|++|++++|.+... +..+..+     .+|++|++++|.+...+..
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            44555777777777765322222323346676 777888887777633 4444443     7777888877777644322


Q ss_pred             -----ccCC-CCCcEEecCCcccccchh-h----hhcc-ccCcEEEecCCCCCC-----CCCccccCCC-CCcEEEcCCC
Q 045321          207 -----LCTI-LNLQTLEMPSSYVDHSLE-D----IWMM-QKLMHLNFGSITLPA-----PPKNYSSSLK-NLIFISALNP  268 (397)
Q Consensus       207 -----~~~l-~~L~~L~l~~~~l~~lp~-~----~~~L-~~L~~L~l~~~~~~~-----~~p~~i~~l~-~L~~l~l~~~  268 (397)
                           +..+ ++|++|++++|.+...+. .    +..+ ++|++|+++ +|...     .++..+..+. +|+++++++|
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR-GNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc-CCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence                 3344 677788887776655543 2    2232 477777777 66433     2233344444 7777777777


Q ss_pred             eeeEE-eccHHhhhcCC-CCCcEEEeecCCCeeE-----EEeccCCCCCCceEEEEecccCCCCCc----cccccCcCCc
Q 045321          269 NLSCY-HSGVSNSLLGL-HKLECLKLVNESKLSR-----VVLSKYQFPLSLSHLSLSNTELMQDPM----PIMEKLPRLQ  337 (397)
Q Consensus       269 ~L~i~-~~~~~~~l~~l-~~L~~L~l~~~~~L~~-----L~l~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~  337 (397)
                      .+.-. ...+...+... ++|+.|+++++. +..     +.-.+....++|++|++++|.+.....    ..+..+++|+
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~  256 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ  256 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence            55100 11223344445 477777777642 222     110111103477777777777655443    2235567777


Q ss_pred             eEEEecccccCce------eEEeCCCCCCCCCEEEEecC
Q 045321          338 VLKLKQNSYLGRK------LACVGSSSFPKLTVLHLKSM  370 (397)
Q Consensus       338 ~L~L~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~  370 (397)
                      .|++++|......      +... ...+++|+.|+++++
T Consensus       257 ~L~L~~n~l~~i~~~~~~~l~~~-~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          257 TVYLDYDIVKNMSKEQCKALGAA-FPNIQKIILVDKNGK  294 (362)
T ss_dssp             EEEEEHHHHTTCCHHHHHHHHTT-STTCCEEEEECTTSC
T ss_pred             EEEeccCCccccCHHHHHHHHHH-hccCCceEEEecCCC
Confidence            7777666522111      1111 344556666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=4.7e-16  Score=139.76  Aligned_cols=147  Identities=18%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF  241 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l  241 (397)
                      ..+++|++|++++|.+..+| .++.+++|++|++++|.+..+|. ++.+++|++|++++|.+..+|....  ++|++|++
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L  113 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL  113 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred             hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence            55566677777777666665 56666777777777776666665 6667777777777776666655322  66777777


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321          242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE  321 (397)
Q Consensus       242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~  321 (397)
                      + +|....++ .++.+++|+.+++++|.+    ..++ .+..+++|+.|+++++ .++.+ -.+.. +++|+.|++++|.
T Consensus       114 ~-~N~l~~~~-~l~~l~~L~~L~Ls~N~i----~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~-l~~L~~L~l~~N~  183 (263)
T 1xeu_A          114 D-NNELRDTD-SLIHLKNLEILSIRNNKL----KSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTR-LKKVNWIDLTGQK  183 (263)
T ss_dssp             C-SSCCSBSG-GGTTCTTCCEEECTTSCC----CBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTT-CCCCCEEEEEEEE
T ss_pred             c-CCccCCCh-hhcCcccccEEECCCCcC----CCCh-HHccCCCCCEEECCCC-cCcch-HHhcc-CCCCCEEeCCCCc
Confidence            6 66555543 466666777777666644    2222 4555555555555542 22222 12333 5555555555554


Q ss_pred             C
Q 045321          322 L  322 (397)
Q Consensus       322 l  322 (397)
                      +
T Consensus       184 ~  184 (263)
T 1xeu_A          184 C  184 (263)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.61  E-value=4.9e-15  Score=132.17  Aligned_cols=154  Identities=18%  Similarity=0.130  Sum_probs=69.5

Q ss_pred             eeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhh-hhccccCcEEEec
Q 045321          166 YLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFG  242 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~  242 (397)
                      .++.|+++++.+..++ ..++++++|++|++++|.+..++. .+..+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            3444444444444332 234444444444444444443332 234444444444444444444322 3444444444444


Q ss_pred             CCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecc
Q 045321          243 SITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNT  320 (397)
Q Consensus       243 ~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~  320 (397)
                       ++....+|.. ++.+++|+.+++++|.+   ....+..++.+++|+.|+++++ .++.+.- .+.. +++|+.|++++|
T Consensus       116 -~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~l~~N  189 (251)
T 3m19_A          116 -GNQLKSLPSGVFDRLTKLKELRLNTNQL---QSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDR-LGKLQTITLFGN  189 (251)
T ss_dssp             -SSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT-CTTCCEEECCSC
T ss_pred             -CCcCCCcChhHhccCCcccEEECcCCcC---CccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhC-CCCCCEEEeeCC
Confidence             4444444333 24444444444444433   1111223444445555555442 2222211 2344 677788888888


Q ss_pred             cCCCC
Q 045321          321 ELMQD  325 (397)
Q Consensus       321 ~l~~~  325 (397)
                      ++...
T Consensus       190 ~~~c~  194 (251)
T 3m19_A          190 QFDCS  194 (251)
T ss_dssp             CBCTT
T ss_pred             ceeCC
Confidence            76443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=2.5e-15  Score=130.03  Aligned_cols=159  Identities=16%  Similarity=0.109  Sum_probs=93.3

Q ss_pred             CeeEEEEcCCCCccccccc-ccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEe
Q 045321          165 KYLRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNF  241 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l  241 (397)
                      +.|++|+++++.++.+|.. ++++++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4566666666666655443 45666666666666666666543 35666666666666666666544 466666666666


Q ss_pred             cCCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecc
Q 045321          242 GSITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNT  320 (397)
Q Consensus       242 ~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~  320 (397)
                      + ++....+|+. ++.+++|+.+++++|.+   ....+..+..+++|+.|++++++       +.+. +++|++|+++.|
T Consensus       108 ~-~N~l~~~~~~~~~~l~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~l~~N~-------~~~~-~~~l~~L~~~~n  175 (208)
T 2o6s_A          108 N-TNQLQSLPDGVFDKLTQLKDLRLYQNQL---KSVPDGVFDRLTSLQYIWLHDNP-------WDCT-CPGIRYLSEWIN  175 (208)
T ss_dssp             C-SSCCCCCCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEECCSCC-------BCCC-TTTTHHHHHHHH
T ss_pred             C-CCcCcccCHhHhccCCcCCEEECCCCcc---ceeCHHHhccCCCccEEEecCCC-------eecC-CCCHHHHHHHHH
Confidence            6 6655555544 45666666666666644   22222234555566666655532       2333 666777777776


Q ss_pred             cCCCCCccccccCcC
Q 045321          321 ELMQDPMPIMEKLPR  335 (397)
Q Consensus       321 ~l~~~~~~~l~~l~~  335 (397)
                      .+....+..++.++.
T Consensus       176 ~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          176 KHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HCTTTBBCTTSSBCT
T ss_pred             hCCceeeccCccccC
Confidence            665555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=5.2e-16  Score=158.87  Aligned_cols=165  Identities=13%  Similarity=0.045  Sum_probs=107.8

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH  192 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~  192 (397)
                      ...++++.+..+........ ....+|+.+.+.............+..|..++.|++|+|++|.+..+|..++++.+|++
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR  251 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence            44567777753443332222 34444444444332211100112255568999999999999999999999999999999


Q ss_pred             EecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeE
Q 045321          193 LKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSC  272 (397)
Q Consensus       193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i  272 (397)
                      |+|++|.+..+|..++++++|++|+|++|.+..+|..++.|++|++|+++ +|.+..+|..++.+++|+.|++++|.+  
T Consensus       252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~-~N~l~~lp~~~~~l~~L~~L~L~~N~l--  328 (727)
T 4b8c_D          252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNPL--  328 (727)
T ss_dssp             CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC-SSCCCCCCSSTTSCTTCCCEECTTSCC--
T ss_pred             EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC-CCCCCccChhhhcCCCccEEeCCCCcc--
Confidence            99999999999999999999999999999999999999999999999999 998889999999999999999999977  


Q ss_pred             EeccHHhhhc
Q 045321          273 YHSGVSNSLL  282 (397)
Q Consensus       273 ~~~~~~~~l~  282 (397)
                       ....+..+.
T Consensus       329 -~~~~p~~~~  337 (727)
T 4b8c_D          329 -EKQFLKILT  337 (727)
T ss_dssp             -CSHHHHHHH
T ss_pred             -CCCChHHHh
Confidence             445555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.59  E-value=5.6e-15  Score=126.76  Aligned_cols=127  Identities=13%  Similarity=0.079  Sum_probs=76.0

Q ss_pred             CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcc-cCccccCCCCC
Q 045321          135 SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKC-LPSLLCTILNL  213 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L  213 (397)
                      .+++|+.|.+.++...     .++.+ ..+++|++|++++|.++.++ .+..+++|++|++++|.+.. .|..++.+++|
T Consensus        42 ~l~~L~~L~l~~n~i~-----~l~~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-----DLTGI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHTCCEEEEESSCCS-----CCTTG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hcCCccEEeccCCCcc-----ChHHH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            3455666666665543     23333 56666666666666555443 55666666666666666653 55666666666


Q ss_pred             cEEecCCccccc-chhhhhccccCcEEEecCCCC-CCCCCccccCCCCCcEEEcCCCee
Q 045321          214 QTLEMPSSYVDH-SLEDIWMMQKLMHLNFGSITL-PAPPKNYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       214 ~~L~l~~~~l~~-lp~~~~~L~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~l~l~~~~L  270 (397)
                      ++|++++|.+.. .|..++.+++|++|+++ +|. ...+| .++.+++|+.+++++|.+
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~-~n~~i~~~~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLS-YNGAITDIM-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECC-SCTBCCCCG-GGGGCSSCCEEECTTBCC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEcc-CCCCccccH-hhcCCCCCCEEECCCCCC
Confidence            666666665553 45556666666666666 554 55554 566666666666666533

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=7.6e-15  Score=137.57  Aligned_cols=215  Identities=13%  Similarity=0.138  Sum_probs=110.1

Q ss_pred             CeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCc-ccCc-cccCCCCCcEEec-CCcccccchh-hhhccccCcEE
Q 045321          165 KYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLK-CLPS-LLCTILNLQTLEM-PSSYVDHSLE-DIWMMQKLMHL  239 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~-~lp~-~~~~l~~L~~L~l-~~~~l~~lp~-~~~~L~~L~~L  239 (397)
                      +++++|++++|.|+.+|. .+.++++|++|++++|.+. .+|. .+.++++|+++.. .++++..+|+ .+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            345556666666665553 3555666666666666542 3432 3445555554333 3335555533 35556666666


Q ss_pred             EecCCCCCCCCCcc-ccCCCCCcEEEcCCC-eeeEEeccHH-hhhcCC-CCCcEEEeecCCCeeEEEeccCCCCCCceEE
Q 045321          240 NFGSITLPAPPKNY-SSSLKNLIFISALNP-NLSCYHSGVS-NSLLGL-HKLECLKLVNESKLSRVVLSKYQFPLSLSHL  315 (397)
Q Consensus       240 ~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~-~L~i~~~~~~-~~l~~l-~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L  315 (397)
                      +++ ++....+|+. .....++..+++.++ .+    ..++ ..+..+ ..++.|++++ ..++.+.-.... ..+|++|
T Consensus       110 ~l~-~n~l~~~~~~~~~~~~~l~~l~l~~~~~i----~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~-~~~L~~l  182 (350)
T 4ay9_X          110 LIS-NTGIKHLPDVHKIHSLQKVLLDIQDNINI----HTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFN-GTQLDEL  182 (350)
T ss_dssp             EEE-EECCSSCCCCTTCCBSSCEEEEEESCTTC----CEECTTSSTTSBSSCEEEECCS-SCCCEECTTSST-TEEEEEE
T ss_pred             ccc-ccccccCCchhhcccchhhhhhhcccccc----ccccccchhhcchhhhhhcccc-ccccCCChhhcc-ccchhHH
Confidence            665 5554444432 223334444444321 11    1111 122232 2455566654 345544322222 4566777


Q ss_pred             EEec-ccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccc
Q 045321          316 SLSN-TELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVN  392 (397)
Q Consensus       316 ~L~~-~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~  392 (397)
                      ++.+ +.+...+...++.+++|++|++++|.+...  +   ...|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus       183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l--p---~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL--P---SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC--C---SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred             hhccCCcccCCCHHHhccCcccchhhcCCCCcCcc--C---hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence            7764 344333344567777777777766654322  1   34566777777777777776653 4456677666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.59  E-value=5.6e-15  Score=127.87  Aligned_cols=146  Identities=20%  Similarity=0.163  Sum_probs=105.5

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT  245 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~  245 (397)
                      +.++.+++.+..+|..+  ..+|++|+++++.++.+|.. ++.+++|++|++++|.+..+|.. +..+++|++|+++ ++
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC-CC
Confidence            46788888888888665  45899999999999988765 67899999999999988888875 6889999999999 88


Q ss_pred             CCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321          246 LPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ  324 (397)
Q Consensus       246 ~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~  324 (397)
                      ....+|.. ++.+++|+.+++++|.+   ....+..+..                         +++|++|++++|.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~-------------------------l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQL---QSLPDGVFDK-------------------------LTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTT-------------------------CTTCCEEECCSSCCSC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcC---cccCHhHhcc-------------------------CCcCCEEECCCCccce
Confidence            87777765 58899999999988755   2222222344                         4455555555555443


Q ss_pred             CCccccccCcCCceEEEecc
Q 045321          325 DPMPIMEKLPRLQVLKLKQN  344 (397)
Q Consensus       325 ~~~~~l~~l~~L~~L~L~~~  344 (397)
                      .....+..+++|+.|++++|
T Consensus       139 ~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          139 VPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSC
T ss_pred             eCHHHhccCCCccEEEecCC
Confidence            33333555556666665444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.58  E-value=5e-15  Score=133.04  Aligned_cols=164  Identities=19%  Similarity=0.184  Sum_probs=77.8

Q ss_pred             eEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCC
Q 045321          167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITL  246 (397)
Q Consensus       167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~  246 (397)
                      +..++++++.++.++ .+..+.+|++|++++|.+..+| .++.+++|++|++++|.+..+|. ++.+++|++|+++ ++.
T Consensus        21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~-~N~   96 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN-RNR   96 (263)
T ss_dssp             HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC-SSC
T ss_pred             HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC-CCc
Confidence            344444555554444 3444555555555555555554 34555555555555555555544 5555555555555 444


Q ss_pred             CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCC
Q 045321          247 PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDP  326 (397)
Q Consensus       247 ~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~  326 (397)
                      ...+|....  ++|+.+++++|.+    ..+ ..+..+++|+.|+++++ .++.++ .+.. +++|+.|++++|.+... 
T Consensus        97 l~~l~~~~~--~~L~~L~L~~N~l----~~~-~~l~~l~~L~~L~Ls~N-~i~~~~-~l~~-l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           97 LKNLNGIPS--ACLSRLFLDNNEL----RDT-DSLIHLKNLEILSIRNN-KLKSIV-MLGF-LSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             CSCCTTCCC--SSCCEEECCSSCC----SBS-GGGTTCTTCCEEECTTS-CCCBCG-GGGG-CTTCCEEECTTSCCCBC-
T ss_pred             cCCcCcccc--CcccEEEccCCcc----CCC-hhhcCcccccEEECCCC-cCCCCh-HHcc-CCCCCEEECCCCcCcch-
Confidence            444433222  5555555555533    111 23445555555555542 222222 2333 45555555555554222 


Q ss_pred             ccccccCcCCceEEEecccc
Q 045321          327 MPIMEKLPRLQVLKLKQNSY  346 (397)
Q Consensus       327 ~~~l~~l~~L~~L~L~~~~~  346 (397)
                       ..+..+++|+.|++++|..
T Consensus       166 -~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEE
T ss_pred             -HHhccCCCCCEEeCCCCcc
Confidence             3445555555555544443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=2.4e-15  Score=140.97  Aligned_cols=219  Identities=13%  Similarity=0.082  Sum_probs=159.3

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCccc-ccchhh-hhccccCcEEEecCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYV-DHSLED-IWMMQKLMHLNFGSI  244 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l-~~lp~~-~~~L~~L~~L~l~~~  244 (397)
                      ++++.+++.++++|..+  ..++++|++++|+|+.+|+ .+.++++|++|++++|.+ +.+|.. +.++++++.+....+
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            56788888899999877  3689999999999999996 579999999999999965 557654 788998887554415


Q ss_pred             CCCCCCC-ccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccC
Q 045321          245 TLPAPPK-NYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTEL  322 (397)
Q Consensus       245 ~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l  322 (397)
                      +....+| ..++.+++|+.+++++|.+   ....+..+....++..|++.++.++..+.- .+......++.|++++|.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECC---SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             CcccccCchhhhhcccccccccccccc---ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            5677775 4578999999999998765   222223344556778888888778887753 3333135789999999997


Q ss_pred             CCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccccC
Q 045321          323 MQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAY  396 (397)
Q Consensus       323 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~  396 (397)
                      .. ..+.....++|++|.+.+++.... ++......+++|+.|+++++ .++.++.  +.+.+|+.|.+.+|.+
T Consensus       167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~  235 (350)
T 4ay9_X          167 QE-IHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYN  235 (350)
T ss_dssp             CE-ECTTSSTTEEEEEEECTTCTTCCC-CCTTTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTT
T ss_pred             cC-CChhhccccchhHHhhccCCcccC-CCHHHhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCC
Confidence            43 334445668899999965443333 33222578899999999986 5887764  4467777777766654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.57  E-value=2.3e-14  Score=125.18  Aligned_cols=147  Identities=14%  Similarity=0.168  Sum_probs=95.9

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSIT  245 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~  245 (397)
                      +.++++++.++.+|..+.  .+|+.|++++|.++.+|. .+..+++|++|++++|.+..+ |..+..+++|++|+++ ++
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC-SS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC-CC
Confidence            467777777777776654  577888888888777665 577778888888888877766 5567778888888887 77


Q ss_pred             CCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321          246 LPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ  324 (397)
Q Consensus       246 ~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~  324 (397)
                      ....+|.. ++.+++|+.+++++|.+   ....+..+..                         +++|++|+|++|.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l---~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKI---NCLRVDAFQD-------------------------LHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTT-------------------------CTTCCEEECCSSCCSC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCC---CEeCHHHcCC-------------------------CCCCCEEECCCCcCCE
Confidence            77777765 46677777777777654   1222223333                         4455555555555544


Q ss_pred             CCccccccCcCCceEEEeccc
Q 045321          325 DPMPIMEKLPRLQVLKLKQNS  345 (397)
Q Consensus       325 ~~~~~l~~l~~L~~L~L~~~~  345 (397)
                      .....+..+++|+.|+|++|.
T Consensus       143 ~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          143 IAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             ECHHHHhCCCCCCEEEeCCCC
Confidence            444445555666666665443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.56  E-value=1.3e-14  Score=143.84  Aligned_cols=177  Identities=16%  Similarity=0.122  Sum_probs=105.7

Q ss_pred             CeeEEEEeCCCCccccccchhH-HhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321          138 YLQSFLNHSSESDHLALIDCEN-FCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL  216 (397)
Q Consensus       138 ~Lr~L~~~~~~~~~~~~~~l~~-~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L  216 (397)
                      +++.|.+.++...     .++. +   +++|++|++++|.++.+|   +.+++|++|++++|.++.+|. +++  +|++|
T Consensus        60 ~L~~L~Ls~n~L~-----~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRLNLS-----SLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHL  125 (571)
T ss_dssp             TCSEEECCSSCCS-----CCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred             CccEEEeCCCCCC-----ccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence            5666666665543     2321 2   255666677766666666   345666677776666666666 544  66777


Q ss_pred             ecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCC
Q 045321          217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNES  296 (397)
Q Consensus       217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~  296 (397)
                      ++++|.+..+|.   .+++|+.|+++ ++....+|.   .+++|+.+++++|.+    ..++. +.  ++|+.|+++++ 
T Consensus       126 ~Ls~N~l~~lp~---~l~~L~~L~Ls-~N~l~~lp~---~l~~L~~L~Ls~N~L----~~lp~-l~--~~L~~L~Ls~N-  190 (571)
T 3cvr_A          126 DVDNNQLTMLPE---LPALLEYINAD-NNQLTMLPE---LPTSLEVLSVRNNQL----TFLPE-LP--ESLEALDVSTN-  190 (571)
T ss_dssp             ECCSSCCSCCCC---CCTTCCEEECC-SSCCSCCCC---CCTTCCEEECCSSCC----SCCCC-CC--TTCCEEECCSS-
T ss_pred             ECCCCcCCCCCC---cCccccEEeCC-CCccCcCCC---cCCCcCEEECCCCCC----CCcch-hh--CCCCEEECcCC-
Confidence            776666666665   46666777766 665555554   456666666666654    22443 33  56666666653 


Q ss_pred             CeeEEEeccCCCCCCc-------eEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321          297 KLSRVVLSKYQFPLSL-------SHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       297 ~L~~L~l~~~~~l~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                      .++.++-    +..+|       +.|++++|.+. ..+..+..+++|+.|+|++|.+.+
T Consensus       191 ~L~~lp~----~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          191 LLESLPA----VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CCSSCCC----CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             CCCchhh----HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence            3333221    12244       88888888874 345556668888888887776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.55  E-value=1.7e-14  Score=142.98  Aligned_cols=176  Identities=20%  Similarity=0.151  Sum_probs=138.2

Q ss_pred             CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCC
Q 045321          165 KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSI  244 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~  244 (397)
                      .++++|+++++.++.+|..+.  ++|++|++++|.++.+|   +.+++|++|++++|.+..+|. +.+  +|++|+++ +
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls-~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD-N  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC-S
T ss_pred             CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC-C
Confidence            389999999999999998774  79999999999999999   568999999999999988998 665  99999999 8


Q ss_pred             CCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321          245 TLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ  324 (397)
Q Consensus       245 ~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~  324 (397)
                      +....+|.   .+++|+.+++++|.+    ..++.   .+++|+.|+++++ .++.++-    +.++|+.|++++|.+..
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l----~~lp~---~l~~L~~L~Ls~N-~L~~lp~----l~~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQL----TMLPE---LPTSLEVLSVRNN-QLTFLPE----LPESLEALDVSTNLLES  194 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCC----SCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred             CcCCCCCC---cCccccEEeCCCCcc----CcCCC---cCCCcCEEECCCC-CCCCcch----hhCCCCEEECcCCCCCc
Confidence            88877887   689999999999876    33444   5678999999874 3444321    24789999999998753


Q ss_pred             CCccccccCcCC-------ceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          325 DPMPIMEKLPRL-------QVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       325 ~~~~~l~~l~~L-------~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                       .+. +..  +|       +.|+|++|.+.  .++.. ...+++|+.|++++++
T Consensus       195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--~lp~~-l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          195 -LPA-VPV--RNHHSEETEIFFRCRENRIT--HIPEN-ILSLDPTCTIILEDNP  241 (571)
T ss_dssp             -CCC-CC----------CCEEEECCSSCCC--CCCGG-GGGSCTTEEEECCSSS
T ss_pred             -hhh-HHH--hhhcccccceEEecCCCcce--ecCHH-HhcCCCCCEEEeeCCc
Confidence             333 443  66       99999777664  33443 5568899999999875

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.54  E-value=3.9e-15  Score=147.74  Aligned_cols=92  Identities=24%  Similarity=0.338  Sum_probs=78.0

Q ss_pred             ccc-cccccccchhhhHHHHh-----------hhccCCCCCccChHHHHHHHHhc--CCCC----C-CHHHHHHHHHHHH
Q 045321            4 ILS-RTCSVWELSFHLKACGI-----------YLCVFPPSIKISTRQLRQLWIAE--GFIQ----Y-NSEETAEHYLKEL   64 (397)
Q Consensus         4 il~-L~lSY~~L~~~lk~cFl-----------~~a~fp~~~~i~~~~Li~~w~a~--g~i~----~-~~~~~~~~~~~~L   64 (397)
                      |.+ |++||++||.++|.||+           |||+||+|+.|+    +++|+|+  ||+.    + ..+++++ ||++|
T Consensus       363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L  437 (549)
T 2a5y_B          363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRL  437 (549)
T ss_dssp             TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHT
T ss_pred             HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHH
Confidence            445 79999999999999999           999999999998    8999999  9997    2 5888888 99999


Q ss_pred             HhCCceeeEecCCCCceeEEEeCHHHHHHHHHHhccCCe
Q 045321           65 IHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRF  103 (397)
Q Consensus        65 ~~~~ll~~~~~~~~~~~~~~~mhdli~dl~~~~~~~~~~  103 (397)
                      +++||++....+   ....|+|||+||++|+.++.++++
T Consensus       438 ~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          438 SKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             TTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            999999987653   336799999999999998876543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=8.5e-17  Score=159.95  Aligned_cols=178  Identities=20%  Similarity=0.171  Sum_probs=134.2

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCC--------------CcccCccccCCCCCcEEe-cCCcccccc
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPS--------------LKCLPSLLCTILNLQTLE-MPSSYVDHS  226 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--------------i~~lp~~~~~l~~L~~L~-l~~~~l~~l  226 (397)
                      ...++|+.|++++|.++.+|++++++.+|+.|+++++.              ....|..++.+++|+.|+ ++.+.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            56778889999999999999999999999999986653              234567778888888888 555544444


Q ss_pred             hh------hhhccc--cCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCe
Q 045321          227 LE------DIWMMQ--KLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKL  298 (397)
Q Consensus       227 p~------~~~~L~--~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L  298 (397)
                      +.      .+..++  .|+.|+++ ++....+|. ++.+++|+.|++++|.+    ..+|..++.+++|+.|++++ ..+
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls-~n~l~~lp~-~~~l~~L~~L~Ls~N~l----~~lp~~~~~l~~L~~L~Ls~-N~l  498 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLA-HKDLTVLCH-LEQLLLVTHLDLSHNRL----RALPPALAALRCLEVLQASD-NAL  498 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECT-TSCCSSCCC-GGGGTTCCEEECCSSCC----CCCCGGGGGCTTCCEEECCS-SCC
T ss_pred             hhhhhhcccccccCccCceEEEec-CCCCCCCcC-ccccccCcEeecCcccc----cccchhhhcCCCCCEEECCC-CCC
Confidence            43      233322  68899999 888888886 99999999999998876    46778888888888888877 345


Q ss_pred             eEEEeccCCCCCCceEEEEecccCCCCC-ccccccCcCCceEEEecccccC
Q 045321          299 SRVVLSKYQFPLSLSHLSLSNTELMQDP-MPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       299 ~~L~l~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                      +.++ .++. +++|+.|+|++|.+.... +..++.+++|+.|+|++|.+.+
T Consensus       499 ~~lp-~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          499 ENVD-GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CCCG-GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCc-ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            5544 5666 788888888888775554 6677888888888887666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=1.4e-14  Score=136.44  Aligned_cols=169  Identities=21%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             EEEcCCCCcccccccccCCCCCceEecCCCCCcccCccc-c-CCCCCcEEecCCcccccchh-hhhccccCcEEEecCCC
Q 045321          169 LLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLL-C-TILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT  245 (397)
Q Consensus       169 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~-~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~  245 (397)
                      +++++++.++.+|..+.  ..+++|++++|.+..+|... . ++++|++|++++|.+..+|. .+..+++|++|+++ ++
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N   98 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SN   98 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SS
T ss_pred             EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CC
Confidence            44555555555554332  23455555555555444332 2 45555555555555555443 25555555555555 44


Q ss_pred             CCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEec-c---CCCCCCceEEEEecc
Q 045321          246 LPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLS-K---YQFPLSLSHLSLSNT  320 (397)
Q Consensus       246 ~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~-~---~~~l~~L~~L~L~~~  320 (397)
                      .+..+|. .++.+++|+.|++++|.+   ....+..+..+++|+.|++++ ..++.++.. +   .. +++|+.|+|++|
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i---~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~-l~~L~~L~L~~N  173 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNK-LPKLMLLDLSSN  173 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC-----CTTCCEEECCSS
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcc---cEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCccc-CCcCCEEECCCC
Confidence            4444433 244555555555555543   222234445555555555554 223332221 1   23 677777777777


Q ss_pred             cCCCCCccccccCcC--CceEEEeccc
Q 045321          321 ELMQDPMPIMEKLPR--LQVLKLKQNS  345 (397)
Q Consensus       321 ~l~~~~~~~l~~l~~--L~~L~L~~~~  345 (397)
                      .+...+...+..+++  ++.|+|.+|.
T Consensus       174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          174 KLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCCccCHHHhhhccHhhcceEEecCCC
Confidence            765555555666665  3667776554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=6.3e-14  Score=123.15  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=46.4

Q ss_pred             CeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEe
Q 045321          165 KYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNF  241 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l  241 (397)
                      +.|++|++++|.++.+ |..++++.+|++|++++|.+..+|.. +..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            3444444444444433 33344444444444444444444432 24444444444444444444433 344444444444


Q ss_pred             cCCCCCCCCCccccCCCCCcEEEcCCC
Q 045321          242 GSITLPAPPKNYSSSLKNLIFISALNP  268 (397)
Q Consensus       242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~  268 (397)
                      + ++....+|..++.+++|+.+++++|
T Consensus       120 s-~N~l~~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A          120 C-CNKLTELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             C-SSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred             c-CCcccccCcccccCCCCCEEECCCC
Confidence            4 4444444444444444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.53  E-value=5.3e-14  Score=122.86  Aligned_cols=147  Identities=14%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc--cccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS--LLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSI  244 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~  244 (397)
                      ++++++++.++.+|..+.  ..+++|++++|.+..++.  .++.+++|++|++++|.+..++. .++.+++|++|+++ +
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-S   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-S
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC-C
Confidence            467777777777776554  345777777777776632  36777777777777777777665 47777777777777 7


Q ss_pred             CCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCC
Q 045321          245 TLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELM  323 (397)
Q Consensus       245 ~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~  323 (397)
                      +....+|.. ++.+++|+++++++|.+   ....+..+..                         +++|++|+|++|.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRI---TCVGNDSFIG-------------------------LSSVRLLSLYDNQIT  142 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCC---CCBCTTSSTT-------------------------CTTCSEEECTTSCCC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcC---CeECHhHcCC-------------------------CccCCEEECCCCcCC
Confidence            666655543 66777777777777644   1222233333                         444555555555544


Q ss_pred             CCCccccccCcCCceEEEeccc
Q 045321          324 QDPMPIMEKLPRLQVLKLKQNS  345 (397)
Q Consensus       324 ~~~~~~l~~l~~L~~L~L~~~~  345 (397)
                      ...+..+..+++|+.|++++|.
T Consensus       143 ~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          143 TVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CBCTTTTTTCTTCCEEECCSCC
T ss_pred             EECHHHhcCCCCCCEEEecCcC
Confidence            3334445555555555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.52  E-value=8.8e-15  Score=137.77  Aligned_cols=233  Identities=10%  Similarity=0.033  Sum_probs=162.1

Q ss_pred             CCCeEEEEEEeCccchhhc----c--CCCC-CeeEEEEeCCCCccccccchhHHhcCC-CeeEEEEcCCCCccccc-cc-
Q 045321          114 LANVKRCFILEDLIEFIFL----E--QSGM-YLQSFLNHSSESDHLALIDCENFCEKF-KYLRLLNLGYAVLDQFP-LG-  183 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~----~--~~~~-~Lr~L~~~~~~~~~~~~~~l~~~~~~l-~~Lr~L~l~~~~i~~lp-~~-  183 (397)
                      ...++++.+..+.......    .  ..++ +|++|.+.++.........+...+... +.|++|++++|.++..+ .. 
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            4568999998555444332    3  5677 999999999987642222332222343 99999999999988443 33 


Q ss_pred             ---ccCC-CCCceEecCCCCCcccCc-c----ccC-CCCCcEEecCCcccc-----cchhhhhccc-cCcEEEecCCCCC
Q 045321          184 ---LENL-ILLKHLKLNIPSLKCLPS-L----LCT-ILNLQTLEMPSSYVD-----HSLEDIWMMQ-KLMHLNFGSITLP  247 (397)
Q Consensus       184 ---~~~l-~~L~~L~l~~~~i~~lp~-~----~~~-l~~L~~L~l~~~~l~-----~lp~~~~~L~-~L~~L~l~~~~~~  247 (397)
                         +..+ .+|++|++++|.+...+. .    +.. .++|++|++++|.+.     .++..+..++ +|++|+++ +|..
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l  179 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR-GNNL  179 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT-TSCG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec-CCCC
Confidence               4455 899999999999986653 2    334 369999999999766     5667777776 99999999 8865


Q ss_pred             CCCC-c----cccCC-CCCcEEEcCCCeeeEE-eccHHhhhcCC-CCCcEEEeecCCCeeEEEe-----ccCCCCCCceE
Q 045321          248 APPK-N----YSSSL-KNLIFISALNPNLSCY-HSGVSNSLLGL-HKLECLKLVNESKLSRVVL-----SKYQFPLSLSH  314 (397)
Q Consensus       248 ~~~p-~----~i~~l-~~L~~l~l~~~~L~i~-~~~~~~~l~~l-~~L~~L~l~~~~~L~~L~l-----~~~~~l~~L~~  314 (397)
                      .... .    .+... ++|+.+++++|.+.-. ...++..+... ++|+.|+++++ .+.....     .+.. +++|+.
T Consensus       180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~-l~~L~~  257 (362)
T 3goz_A          180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDS-LKHLQT  257 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTT-TTTCSE
T ss_pred             chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhc-CCCccE
Confidence            4433 2    34445 6999999999966210 11366677664 59999999985 3333211     3455 899999


Q ss_pred             EEEecccCCCCCc-------cccccCcCCceEEEecccccCc
Q 045321          315 LSLSNTELMQDPM-------PIMEKLPRLQVLKLKQNSYLGR  349 (397)
Q Consensus       315 L~L~~~~l~~~~~-------~~l~~l~~L~~L~L~~~~~~~~  349 (397)
                      |++++|.+.....       ..+..+++|+.|++++|.....
T Consensus       258 L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            9999998433222       2456788899999977765443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=2.9e-14  Score=116.40  Aligned_cols=126  Identities=17%  Similarity=0.053  Sum_probs=97.5

Q ss_pred             CCCeeEEEEcCCCCcc--cccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCccccc-chhhhhccccCcEE
Q 045321          163 KFKYLRLLNLGYAVLD--QFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDH-SLEDIWMMQKLMHL  239 (397)
Q Consensus       163 ~l~~Lr~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L  239 (397)
                      ..+.|+.|++++|.+.  .+|..++.+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..++.+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            4467888888888887  7888788888888888888888877 678888888888888887777 77777778888888


Q ss_pred             EecCCCCCCCCC--ccccCCCCCcEEEcCCCeeeEEeccHH---hhhcCCCCCcEEEee
Q 045321          240 NFGSITLPAPPK--NYSSSLKNLIFISALNPNLSCYHSGVS---NSLLGLHKLECLKLV  293 (397)
Q Consensus       240 ~l~~~~~~~~~p--~~i~~l~~L~~l~l~~~~L~i~~~~~~---~~l~~l~~L~~L~l~  293 (397)
                      +++ +|....+|  ..++.+++|+.+++++|.+   ....+   ..+..+++|+.|+++
T Consensus        94 ~ls-~N~i~~~~~~~~~~~l~~L~~L~l~~N~l---~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLS-GNKIKDLSTIEPLKKLENLKSLDLFNCEV---TNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECT-TSCCCSHHHHGGGGGCTTCCEEECTTCGG---GGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECC-CCcCCChHHHHHHhhCCCCCEEeCcCCcc---cchHHHHHHHHHHCCCcccccCC
Confidence            888 77766654  6788888888888888755   22211   357777788777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=3.5e-14  Score=118.46  Aligned_cols=126  Identities=17%  Similarity=0.075  Sum_probs=92.8

Q ss_pred             CCCeeEEEEcCCCCcc--cccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCccccc-chhhhhccccCcEE
Q 045321          163 KFKYLRLLNLGYAVLD--QFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDH-SLEDIWMMQKLMHL  239 (397)
Q Consensus       163 ~l~~Lr~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L  239 (397)
                      ..+.|++|++++|.+.  .+|..++.+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..++.+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            4467888888888887  7787778888888888888888777 677888888888888887766 66667778888888


Q ss_pred             EecCCCCCCCCC--ccccCCCCCcEEEcCCCeeeEEeccHH----hhhcCCCCCcEEEeec
Q 045321          240 NFGSITLPAPPK--NYSSSLKNLIFISALNPNLSCYHSGVS----NSLLGLHKLECLKLVN  294 (397)
Q Consensus       240 ~l~~~~~~~~~p--~~i~~l~~L~~l~l~~~~L~i~~~~~~----~~l~~l~~L~~L~l~~  294 (397)
                      +++ +|....+|  ..++.+++|+.+++++|.+    ...+    ..+..+++|+.|++++
T Consensus       101 ~Ls-~N~l~~~~~~~~l~~l~~L~~L~l~~N~l----~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          101 NLS-GNKLKDISTLEPLKKLECLKSLDLFNCEV----TNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             ECB-SSSCCSSGGGGGGSSCSCCCEEECCSSGG----GTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             ecc-CCccCcchhHHHHhcCCCCCEEEeeCCcC----cchHHHHHHHHHhCccCcEecCCC
Confidence            888 77777765  5777888888888887754    2222    2455555555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.51  E-value=8.5e-14  Score=122.31  Aligned_cols=126  Identities=21%  Similarity=0.243  Sum_probs=66.2

Q ss_pred             CCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccccc-ccCCCCCceEecCCCCCcccCcc-ccCCCCC
Q 045321          137 MYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPSL-LCTILNL  213 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L  213 (397)
                      ++|+.|.+.++...     .+ +..|..+++|++|++++|.+..+|.. +..+.+|++|++++|.++.+|.. +..+++|
T Consensus        40 ~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDNQIT-----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEEcCCCccC-----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence            55555555555543     22 33335555555555555555555432 35555555555555555555443 3455555


Q ss_pred             cEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCC
Q 045321          214 QTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNP  268 (397)
Q Consensus       214 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~  268 (397)
                      ++|++++|.+..+|..+..+++|++|+++ ++....+|. .+..+++|+.+++++|
T Consensus       115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          115 KELFMCCNKLTELPRGIERLTHLTHLALD-QNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CEEECCSSCCCSCCTTGGGCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CeEeccCCcccccCcccccCCCCCEEECC-CCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            55555555555555555555555555555 554444443 2444555555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=1.8e-13  Score=119.46  Aligned_cols=104  Identities=10%  Similarity=0.090  Sum_probs=61.7

Q ss_pred             eeEEEEcCCCCccccc--ccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhh-hhccccCcEEEe
Q 045321          166 YLRLLNLGYAVLDQFP--LGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNF  241 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l  241 (397)
                      .+++|++++|.++.++  ..++++++|++|++++|.++.+|+ .+..+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            3456666666666542  235566666666666666665544 466666666666666655555543 566666666666


Q ss_pred             cCCCCCCCC-CccccCCCCCcEEEcCCCee
Q 045321          242 GSITLPAPP-KNYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       242 ~~~~~~~~~-p~~i~~l~~L~~l~l~~~~L  270 (397)
                      + ++....+ |..++.+++|+.+++++|.+
T Consensus       113 s-~N~l~~~~~~~~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A          113 R-SNRITCVGNDSFIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             T-TSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred             C-CCcCCeECHhHcCCCccCCEEECCCCcC
Confidence            6 5554444 44566666666666666544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=8.9e-16  Score=154.00  Aligned_cols=129  Identities=15%  Similarity=0.046  Sum_probs=89.9

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCC-Cccc--ccccccCCCCCceEecCCCCCcc-----cCc
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYA-VLDQ--FPLGLENLILLKHLKLNIPSLKC-----LPS  205 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~i~~-----lp~  205 (397)
                      ..+++|++|.+.++....   ..+..+...+++|++|++++| .+..  ++....++++|++|++++|.+..     ++.
T Consensus       102 ~~~~~L~~L~L~~~~~~~---~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTD---DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             HHCTTCCEEEEESCBCCH---HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             HhCCCCCeEEeeCcEEcH---HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            468899999999987642   122445347899999999999 4653  55556689999999999987543     434


Q ss_pred             cccCCCCCcEEecCCcc--c--ccchhhhhccccCcEEEecCCCC-CCCCCccccCCCCCcEEEcC
Q 045321          206 LLCTILNLQTLEMPSSY--V--DHSLEDIWMMQKLMHLNFGSITL-PAPPKNYSSSLKNLIFISAL  266 (397)
Q Consensus       206 ~~~~l~~L~~L~l~~~~--l--~~lp~~~~~L~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~l~l~  266 (397)
                      ....+++|++|++++|.  +  ..++..+..+++|++|+++ +|. ...+|..++.+++|+.+.++
T Consensus       179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN-RAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC-TTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC-CCCcHHHHHHHHhcCCcceEcccc
Confidence            44577899999999985  2  2234445667999999999 772 22344445555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.48  E-value=1.8e-13  Score=119.49  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=48.9

Q ss_pred             eeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEec
Q 045321          166 YLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFG  242 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~  242 (397)
                      .+++|++++|.++.+|. .+..+++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            44555555555444432 344455555555555554443 34445555555555555544444443 3445555555555


Q ss_pred             CCCCCCCC-CccccCCCCCcEEEcCCC
Q 045321          243 SITLPAPP-KNYSSSLKNLIFISALNP  268 (397)
Q Consensus       243 ~~~~~~~~-p~~i~~l~~L~~l~l~~~  268 (397)
                       ++....+ |..++.+++|+.+++++|
T Consensus       113 -~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B          113 -ANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             -SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             -CCCCCEeCHHHcCCCCCCCEEECCCC
Confidence             4443333 233444555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=4.6e-14  Score=115.25  Aligned_cols=128  Identities=18%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcc-cCccccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKC-LPSLLCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~  212 (397)
                      ...++++.|.+.++....   ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++
T Consensus        14 ~~~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             CCGGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             CCCccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            445778888888887641   13444558889999999999998877 778899999999999999887 7777778999


Q ss_pred             CcEEecCCcccccch--hhhhccccCcEEEecCCCCCCCCCc----cccCCCCCcEEEcC
Q 045321          213 LQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAPPKN----YSSSLKNLIFISAL  266 (397)
Q Consensus       213 L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~l~l~  266 (397)
                      |++|++++|.+..+|  ..++.+++|++|+++ +|....+|.    .++.+++|+.++++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF-NCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECT-TCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCc-CCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999999888876  678999999999999 887777765    57888999988765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=5.4e-14  Score=117.29  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=93.3

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcc-cCccccCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKC-LPSLLCTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~  212 (397)
                      ...++|+.|.+.++....   ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++
T Consensus        21 ~~~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             SCTTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             CCcccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            445677777777776530   13333446777788888888887766 667778888888888887776 6666666888


Q ss_pred             CcEEecCCcccccch--hhhhccccCcEEEecCCCCCCCCCc----cccCCCCCcEEEcCCC
Q 045321          213 LQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAPPKN----YSSSLKNLIFISALNP  268 (397)
Q Consensus       213 L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~l~l~~~  268 (397)
                      |++|++++|.+..+|  ..++.+++|++|+++ +|....+|.    .++.+++|+.+++++|
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLF-NCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECC-SSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEee-CCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            888888888777766  567778888888887 776666665    5777888888777765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1.5e-13  Score=115.54  Aligned_cols=103  Identities=16%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             CCCeeEEEEcCCCCcccccccccCCC-CCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhh-hccccCcEEE
Q 045321          163 KFKYLRLLNLGYAVLDQFPLGLENLI-LLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDI-WMMQKLMHLN  240 (397)
Q Consensus       163 ~l~~Lr~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~-~~L~~L~~L~  240 (397)
                      .+..|++|++++|.++.+|. +..+. +|++|++++|.+..+ +.++.+++|++|++++|.+..+|+.+ +.+++|++|+
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            34444555555554444432 22222 455555555444444 33444455555555555444444332 4444555555


Q ss_pred             ecCCCCCCCCCc--cccCCCCCcEEEcCCC
Q 045321          241 FGSITLPAPPKN--YSSSLKNLIFISALNP  268 (397)
Q Consensus       241 l~~~~~~~~~p~--~i~~l~~L~~l~l~~~  268 (397)
                      ++ ++....+|.  .++.+++|+.+++++|
T Consensus        95 L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           95 LT-NNSLVELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             CC-SCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             CC-CCcCCcchhhHhhhcCCCCCEEEecCC
Confidence            54 444444443  3444444444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1.1e-13  Score=116.44  Aligned_cols=129  Identities=12%  Similarity=0.061  Sum_probs=111.1

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccc-cCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLL-CTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~  212 (397)
                      ..+++|+.|.+.++...     .++.+....+.|++|++++|.++.+ +.++.+++|++|++++|.+..+|+.+ +.+++
T Consensus        16 ~~~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             CCcCCceEEEeeCCCCc-----hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            67889999999998775     3444533344999999999999987 67899999999999999999998766 89999


Q ss_pred             CcEEecCCcccccchh--hhhccccCcEEEecCCCCCCCCCcc----ccCCCCCcEEEcCCCe
Q 045321          213 LQTLEMPSSYVDHSLE--DIWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISALNPN  269 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~l~l~~~~  269 (397)
                      |++|++++|.+..+|.  .++.+++|++|+++ ++....+|..    ++.+++|+.++++++.
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~-~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCIL-RNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECC-SSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEec-CCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999999999999997  78999999999999 8887778875    8889999999888763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=2.6e-13  Score=127.61  Aligned_cols=151  Identities=16%  Similarity=0.095  Sum_probs=107.8

Q ss_pred             CCCeeEEEEeCCCCccccccch-hHHhc-CCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCCC
Q 045321          136 GMYLQSFLNHSSESDHLALIDC-ENFCE-KFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTIL  211 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~-~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~  211 (397)
                      .+.++.|.+.++...     .+ +..|. .+++|++|++++|.+..++ ..+.++++|++|++++|.++.+|. .+..++
T Consensus        38 ~~~l~~L~Ls~N~l~-----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  112 (361)
T 2xot_A           38 PSYTALLDLSHNNLS-----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ  112 (361)
T ss_dssp             CTTCSEEECCSSCCC-----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCCCEEECCCCCCC-----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence            455788888887765     33 44445 7888888888888888665 457888888888888888887765 467888


Q ss_pred             CCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCCCCccc----cCCCCCcEEEcCCCeeeEEeccHHhhhcCCCC
Q 045321          212 NLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAPPKNYS----SSLKNLIFISALNPNLSCYHSGVSNSLLGLHK  286 (397)
Q Consensus       212 ~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~  286 (397)
                      +|++|++++|.+..+ |..+..+++|++|+++ ++....+|..+    +.+++|+.+++++|.+   ....+..+..++.
T Consensus       113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~-~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~  188 (361)
T 2xot_A          113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS-QNQISRFPVELIKDGNKLPKLMLLDLSSNKL---KKLPLTDLQKLPA  188 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCSCCGGGTC----CTTCCEEECCSSCC---CCCCHHHHHHSCH
T ss_pred             CCCEEECCCCcccEECHHHhCCcccCCEEECC-CCcCCeeCHHHhcCcccCCcCCEEECCCCCC---CccCHHHhhhccH
Confidence            888888888877776 4457888888888888 77777777664    5688888888888765   2223345555655


Q ss_pred             --CcEEEeecC
Q 045321          287 --LECLKLVNE  295 (397)
Q Consensus       287 --L~~L~l~~~  295 (397)
                        ++.|++.++
T Consensus       189 ~~l~~l~l~~N  199 (361)
T 2xot_A          189 WVKNGLYLHNN  199 (361)
T ss_dssp             HHHTTEECCSS
T ss_pred             hhcceEEecCC
Confidence              366777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=6.7e-13  Score=113.24  Aligned_cols=120  Identities=17%  Similarity=0.123  Sum_probs=82.1

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCcc--ccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSL--LCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSI  244 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~  244 (397)
                      ++++++++.++.+|..+..  +|++|++++|.+..+|..  ++.+++|++|++++|.+..+ |..++.+++|++|+++ +
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-E   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-S
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-C
Confidence            5778888888777776654  788888888888777653  77888888888888877776 5567788888888887 7


Q ss_pred             CCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321          245 TLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV  293 (397)
Q Consensus       245 ~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~  293 (397)
                      +....++.. ++.+++|+.+++++|.+   ....+..+..+++|+.|+++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQI---SCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCC---CEECTTSSTTCTTCCEEECT
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcC---CeeCHHHhhcCCCCCEEEeC
Confidence            766655543 67777777777777755   22233444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=5.4e-13  Score=132.56  Aligned_cols=99  Identities=17%  Similarity=0.129  Sum_probs=47.2

Q ss_pred             CceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCe
Q 045321          190 LKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPN  269 (397)
Q Consensus       190 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~  269 (397)
                      |++|++++|.++.+|. ++.+++|++|++++|.+..+|..++.+++|++|+++ ++....+| .++.+++|+.|++++|.
T Consensus       443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC-SSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECC-CCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            4445555554444443 444555555555555444454445555555555554 44444444 44445555555554443


Q ss_pred             eeEEeccH-HhhhcCCCCCcEEEeec
Q 045321          270 LSCYHSGV-SNSLLGLHKLECLKLVN  294 (397)
Q Consensus       270 L~i~~~~~-~~~l~~l~~L~~L~l~~  294 (397)
                      +   .... |..++.+++|+.|++++
T Consensus       520 l---~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          520 L---QQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             C---CSSSTTGGGGGCTTCCEEECTT
T ss_pred             C---CCCCCcHHHhcCCCCCEEEecC
Confidence            3   1111 44444555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.39  E-value=2.1e-12  Score=110.17  Aligned_cols=100  Identities=15%  Similarity=0.172  Sum_probs=59.6

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITL  246 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~  246 (397)
                      ++++++++.++.+|..+.  .+|++|++++|.+..+|..+..+++|++|++++|.+..++. .+..+++|++|+++ ++.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCc
Confidence            355666666666665443  45666666666666666666666666666666666655553 35666666666666 555


Q ss_pred             CCCCCc-cccCCCCCcEEEcCCCee
Q 045321          247 PAPPKN-YSSSLKNLIFISALNPNL  270 (397)
Q Consensus       247 ~~~~p~-~i~~l~~L~~l~l~~~~L  270 (397)
                      ...+++ .++.+++|+.+++++|.+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDI  114 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCC
Confidence            554443 355666666666665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=3.7e-14  Score=121.71  Aligned_cols=112  Identities=15%  Similarity=0.071  Sum_probs=82.6

Q ss_pred             chhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhcccc
Q 045321          156 DCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQK  235 (397)
Q Consensus       156 ~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~  235 (397)
                      .++..+..+++|++|++++|.++.+| .++++++|++|++++|.+..+|..+..+++|++|++++|.+..+| .++.+++
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~  116 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN  116 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence            33334477788888888888877777 777788888888888877777777777778888888888777776 4777788


Q ss_pred             CcEEEecCCCCCCCCCc--cccCCCCCcEEEcCCCee
Q 045321          236 LMHLNFGSITLPAPPKN--YSSSLKNLIFISALNPNL  270 (397)
Q Consensus       236 L~~L~l~~~~~~~~~p~--~i~~l~~L~~l~l~~~~L  270 (397)
                      |++|+++ ++....++.  .++.+++|+.+++++|.+
T Consensus       117 L~~L~l~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          117 LRVLYMS-NNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEES-EEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCEEECC-CCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            8888887 766665543  567777777777777644

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=105.82  Aligned_cols=105  Identities=15%  Similarity=0.061  Sum_probs=93.3

Q ss_pred             CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchh-hhhccccCcEEEec
Q 045321          165 KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFG  242 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~  242 (397)
                      +.|++|++++|.++.+|..+.++.+|++|++++|.++.++. .+..+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            57999999999999999999999999999999999998874 58899999999999998888876 58999999999999


Q ss_pred             CCCCCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321          243 SITLPAPPKNY-SSSLKNLIFISALNPNL  270 (397)
Q Consensus       243 ~~~~~~~~p~~-i~~l~~L~~l~l~~~~L  270 (397)
                       ++....+|.. +..+++|+.+++++|.+
T Consensus       111 -~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          111 -GNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             -SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             -CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence             8888888775 78899999999998754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=2.7e-12  Score=131.44  Aligned_cols=120  Identities=11%  Similarity=-0.021  Sum_probs=99.3

Q ss_pred             EcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCC
Q 045321          171 NLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPP  250 (397)
Q Consensus       171 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~  250 (397)
                      ++..+.+...|..+..+.+|+.|+|++|.+..+|..+.++++|++|+|++|.+..+|..+++|++|++|+++ +|.+..+
T Consensus       207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~l  285 (727)
T 4b8c_D          207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSL  285 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECT-TSCCSSC
T ss_pred             cccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCc-CCcCCcc
Confidence            333444445577889999999999999999999999999999999999999999999999999999999999 9988899


Q ss_pred             CccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC
Q 045321          251 KNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE  295 (397)
Q Consensus       251 p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~  295 (397)
                      |..++.+++|+.|++++|.+    ..+|..++.+++|+.|+++++
T Consensus       286 p~~~~~l~~L~~L~L~~N~l----~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMV----TTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCC----CCCCSSTTSCTTCCCEECTTS
T ss_pred             ChhhcCCCCCCEEECCCCCC----CccChhhhcCCCccEEeCCCC
Confidence            99999999999999999976    577888999999999999985

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.29  E-value=8.8e-12  Score=106.25  Aligned_cols=104  Identities=15%  Similarity=0.110  Sum_probs=85.7

Q ss_pred             eeEEEEcCCCCccccccc--ccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEe
Q 045321          166 YLRLLNLGYAVLDQFPLG--LENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNF  241 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l  241 (397)
                      .+++|++++|.+..++..  ++.+++|++|++++|.++.+ |..++.+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            788899999988877653  78889999999999888876 67788899999999999988887765 788899999999


Q ss_pred             cCCCCCCCC-CccccCCCCCcEEEcCCCee
Q 045321          242 GSITLPAPP-KNYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       242 ~~~~~~~~~-p~~i~~l~~L~~l~l~~~~L  270 (397)
                      + ++....+ |..++.+++|+.+++++|.+
T Consensus       110 ~-~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          110 Y-DNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             C-SSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             C-CCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            8 7765544 66788889999999988754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.25  E-value=4.4e-11  Score=100.41  Aligned_cols=98  Identities=16%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT  245 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~  245 (397)
                      +.++++++.+..+|..+.  .+|++|++++|.+..+|.. ++.+++|++|++++|.+..+|.. ++.+++|++|+++ ++
T Consensus        10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-EN   86 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred             CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-CC
Confidence            344555555554443332  3455555555555544432 34455555555555544444433 3455555555555 44


Q ss_pred             CCCCCCcc-ccCCCCCcEEEcCCC
Q 045321          246 LPAPPKNY-SSSLKNLIFISALNP  268 (397)
Q Consensus       246 ~~~~~p~~-i~~l~~L~~l~l~~~  268 (397)
                      ....+|.. ++.+++|+.+++++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccccCHHHhhCCcccCEEECcCC
Confidence            44444433 344555555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.21  E-value=6.4e-11  Score=99.17  Aligned_cols=100  Identities=22%  Similarity=0.199  Sum_probs=80.6

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT  245 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~  245 (397)
                      ++++++++.+..+|..+.  .+|++|++++|.+..+ |..++.+++|++|++++|.+..+|.. +..+++|++|+++ ++
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CC
Confidence            678888888888887665  7888888888888877 45678888888888888888888876 5788888888888 87


Q ss_pred             CCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321          246 LPAPPKNY-SSSLKNLIFISALNPNL  270 (397)
Q Consensus       246 ~~~~~p~~-i~~l~~L~~l~l~~~~L  270 (397)
                      ....+|+. ++.+++|+.+++++|.+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            77777765 77888888888887744

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.20  E-value=1.1e-10  Score=98.02  Aligned_cols=106  Identities=16%  Similarity=0.118  Sum_probs=87.2

Q ss_pred             CCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEE
Q 045321          164 FKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLN  240 (397)
Q Consensus       164 l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~  240 (397)
                      .+.|++|+++++.+..+|. .++++.+|++|++++|.+..+|.. ++.+++|++|++++|.+..+|.. ++.+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            4678899999998887765 458889999999999988888765 57899999999999988888765 68889999999


Q ss_pred             ecCCCCCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321          241 FGSITLPAPPKNY-SSSLKNLIFISALNPNL  270 (397)
Q Consensus       241 l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L  270 (397)
                      ++ ++....+|.. +..+++|+.+++++|.+
T Consensus       107 l~-~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          107 LD-TNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CC-SSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             Cc-CCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            98 8877777776 47788899998888754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.19  E-value=8.1e-11  Score=98.13  Aligned_cols=101  Identities=17%  Similarity=0.138  Sum_probs=85.9

Q ss_pred             eEEEEcCCCCcccccccccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCC
Q 045321          167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSI  244 (397)
Q Consensus       167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~  244 (397)
                      .++++++++.++.+|..+.  .+|++|++++|.++.+ |..+..+++|++|++++|.+..+|.. +..+++|++|+++ +
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN-D   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-S
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC-C
Confidence            5688999999998987764  7899999999999887 56688999999999999988888876 5889999999999 8


Q ss_pred             CCCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321          245 TLPAPPKNY-SSSLKNLIFISALNPNL  270 (397)
Q Consensus       245 ~~~~~~p~~-i~~l~~L~~l~l~~~~L  270 (397)
                      +....+|+. ++.+++|+.+++++|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            887777765 78899999999988744

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.18  E-value=1.3e-12  Score=112.09  Aligned_cols=120  Identities=21%  Similarity=0.179  Sum_probs=89.7

Q ss_pred             eEEEEcCCC--CcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCC
Q 045321          167 LRLLNLGYA--VLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSI  244 (397)
Q Consensus       167 Lr~L~l~~~--~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~  244 (397)
                      |+...+++.  .++.+|..++.+++|++|++++|.+..+| .++.+++|++|++++|.+..+|..+..+++|++|+++ +
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~-~  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS-Y  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE-E
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc-C
Confidence            334444443  34456668899999999999999988888 8899999999999999888899888888999999999 8


Q ss_pred             CCCCCCCccccCCCCCcEEEcCCCeeeEEeccHH--hhhcCCCCCcEEEee
Q 045321          245 TLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVS--NSLLGLHKLECLKLV  293 (397)
Q Consensus       245 ~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~--~~l~~l~~L~~L~l~  293 (397)
                      |....+| .++.+++|+.+++++|.+    ..++  ..+..+++|+.|+++
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i----~~~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKI----TNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEEC----CCHHHHHHHTTTTTCSEEEEC
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcC----CchhHHHHHhcCCCCCEEEec
Confidence            8777766 688888888888888755    3222  244444444444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.06  E-value=2.2e-10  Score=95.92  Aligned_cols=107  Identities=12%  Similarity=0.059  Sum_probs=82.1

Q ss_pred             eEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEe
Q 045321          140 QSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLE  217 (397)
Q Consensus       140 r~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~  217 (397)
                      +++.+.++...     .++.  .-.+.|++|++++|.++.+ |..++++++|++|++++|.+..+|.. +.++++|++|+
T Consensus        15 ~~l~~~~n~l~-----~iP~--~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQNIRLA-----SVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCSSCCS-----SCCS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cEEEeCCCCCC-----ccCC--CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            45566665543     3322  1137789999999998876 56788999999999999999988876 47899999999


Q ss_pred             cCCcccccchhh-hhccccCcEEEecCCCCCCCCCccc
Q 045321          218 MPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNYS  254 (397)
Q Consensus       218 l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~i  254 (397)
                      +++|.+..+|.. +..+++|++|+++ ++.....+..+
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~-~N~~~c~~~~~  124 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLY-NNPWDCECRDI  124 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECC-SSCBCTTBGGG
T ss_pred             CCCCccceeCHHHhccccCCCEEEeC-CCCcccccccH
Confidence            999988888876 8889999999998 77655555433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=9.1e-10  Score=101.92  Aligned_cols=101  Identities=12%  Similarity=-0.006  Sum_probs=59.6

Q ss_pred             CCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCce-EEEEecccCCCCCccccccCc
Q 045321          257 LKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLS-HLSLSNTELMQDPMPIMEKLP  334 (397)
Q Consensus       257 l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~-~L~L~~~~l~~~~~~~l~~l~  334 (397)
                      +++|+.+++++|.+   ...-...+..+++|+.+++..  +++.+.- .|.. +++|+ .+++.. .+.......|.+++
T Consensus       225 ~~~L~~l~L~~n~i---~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~-~~~L~~~l~l~~-~l~~I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNA---TTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSN-CGRLAGTLELPA-SVTAIEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCC---CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred             cCCCeEEECCCCCc---ceecHhhhhCCCCCCEEECCc--ccceehHHHhhC-ChhccEEEEEcc-cceEEchhhhhCCc
Confidence            56777777776544   222234567777777777764  3655533 3455 77777 787777 44444455677788


Q ss_pred             CCceEEEecccccCceeEEeCCCCCCCCCEEE
Q 045321          335 RLQVLKLKQNSYLGRKLACVGSSSFPKLTVLH  366 (397)
Q Consensus       335 ~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~  366 (397)
                      +|+.+.+..+..  ..+......++++|+.++
T Consensus       298 ~L~~l~l~~n~i--~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          298 NLRYVLATGDKI--TTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TEEEEEECSSCC--CEECTTTTCTTCCCCEEE
T ss_pred             cCCEEEeCCCcc--CccchhhhcCCcchhhhc
Confidence            888888744433  122221244556666654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.98  E-value=4.9e-10  Score=121.67  Aligned_cols=85  Identities=22%  Similarity=0.280  Sum_probs=74.9

Q ss_pred             cccccccchhhhHHHHhhhccCCCCCccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCceeeEecCCCCceeEEEe
Q 045321            7 RTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYV   86 (397)
Q Consensus         7 L~lSY~~L~~~lk~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~m   86 (397)
                      +++||+.||+++|.||+|||+||+++.|+++.++.+|.++       ++.++.++++|++++|++....   +....|+|
T Consensus       368 l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~  437 (1249)
T 3sfz_A          368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNRN---GKSFCYYL  437 (1249)
T ss_dssp             HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEES---SSSEEEEC
T ss_pred             HHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEecC---CCceEEEe
Confidence            6899999999999999999999999999999999999754       4668899999999999997653   33467999


Q ss_pred             CHHHHHHHHHHhccC
Q 045321           87 PSLVYYSLLLVAEKT  101 (397)
Q Consensus        87 hdli~dl~~~~~~~~  101 (397)
                      ||++|++++..+.++
T Consensus       438 h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          438 HDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             CHHHHHHHHHHTGGG
T ss_pred             cHHHHHHHHhhhhHH
Confidence            999999999887654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.97  E-value=2.3e-09  Score=89.22  Aligned_cols=79  Identities=14%  Similarity=0.024  Sum_probs=68.6

Q ss_pred             CCceEecCCCCCcccCccccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcC
Q 045321          189 LLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISAL  266 (397)
Q Consensus       189 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~  266 (397)
                      ..+.++++++.++++|..+.  .+|++|++++|.+..+ |..++.+++|++|+++ ++.+..+|+. ++.+++|+.++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEECC
Confidence            35789999999999998774  8999999999999888 4568999999999999 8888888876 4789999999999


Q ss_pred             CCee
Q 045321          267 NPNL  270 (397)
Q Consensus       267 ~~~L  270 (397)
                      +|.+
T Consensus        87 ~N~l   90 (170)
T 3g39_A           87 DNQL   90 (170)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            8855

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=98.92  E-value=4.8e-10  Score=115.25  Aligned_cols=78  Identities=19%  Similarity=0.150  Sum_probs=68.5

Q ss_pred             cccccccchhhh-HHHHhhhccCCCCCccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCceeeEecCCCCceeEEE
Q 045321            7 RTCSVWELSFHL-KACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACY   85 (397)
Q Consensus         7 L~lSY~~L~~~l-k~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~   85 (397)
                      |++||+.||+++ |+||+|||+||+++.|+++.++.+|+++|.      +.++.++++|+++||++...     ....|+
T Consensus       359 LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe------edAe~~L~eLvdRSLLq~d~-----~~~rYr  427 (1221)
T 1vt4_I          359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------SDVMVVVNKLHKYSLVEKQP-----KESTIS  427 (1221)
T ss_dssp             HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS------HHHHHHHHHHHTSSSSSBCS-----SSSEEB
T ss_pred             HHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH------HHHHHHHHHHHhhCCEEEeC-----CCCEEE
Confidence            699999999999 999999999999999999999999998862      45889999999999999831     225799


Q ss_pred             eCHHHHHHHH
Q 045321           86 VPSLVYYSLL   95 (397)
Q Consensus        86 mhdli~dl~~   95 (397)
                      |||++++++.
T Consensus       428 MHDLllELr~  437 (1221)
T 1vt4_I          428 IPSIYLELKV  437 (1221)
T ss_dssp             CCCHHHHHHH
T ss_pred             ehHHHHHHhc
Confidence            9999999663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.86  E-value=8.3e-09  Score=96.08  Aligned_cols=99  Identities=17%  Similarity=0.084  Sum_probs=60.9

Q ss_pred             EEcCCC-CcccccccccCCCCCceEecCC-CCCcccC-ccccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCC
Q 045321          170 LNLGYA-VLDQFPLGLENLILLKHLKLNI-PSLKCLP-SLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT  245 (397)
Q Consensus       170 L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~  245 (397)
                      ++++++ .++.+|. ++.+.+|++|+|++ |.+..+| ..++.+++|++|+|++|.+..+|+ .++.|++|++|+++ ++
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~-~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS-FN   90 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC-SS
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC-CC
Confidence            456665 5666666 66666666666664 6666665 346666666666666666666554 35666666666666 66


Q ss_pred             CCCCCCccccCCCCCcEEEcCCCee
Q 045321          246 LPAPPKNYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       246 ~~~~~p~~i~~l~~L~~l~l~~~~L  270 (397)
                      .+..+|+.+.....|+.|++.+|.+
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCc
Confidence            6656665544333366666666533

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.79  E-value=1.8e-09  Score=101.54  Aligned_cols=134  Identities=15%  Similarity=0.037  Sum_probs=70.7

Q ss_pred             CCCeeEEEEeCCCCccccccchhHHhc-CCCeeEEEEcCCCCccc--ccccccCCCCCceEecCCCCCccc-----Cccc
Q 045321          136 GMYLQSFLNHSSESDHLALIDCENFCE-KFKYLRLLNLGYAVLDQ--FPLGLENLILLKHLKLNIPSLKCL-----PSLL  207 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l~~~~~-~l~~Lr~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~i~~l-----p~~~  207 (397)
                      .++|++|.+.++.........+...+. ..+.|++|++++|.+..  ...-...+.+|++|++++|.+...     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            455667777666654322222322222 23567777777777652  111122345677777777766422     1222


Q ss_pred             -cCCCCCcEEecCCccccc-----chhhhhccccCcEEEecCCCCCCC-----CCccccCCCCCcEEEcCCCee
Q 045321          208 -CTILNLQTLEMPSSYVDH-----SLEDIWMMQKLMHLNFGSITLPAP-----PKNYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       208 -~~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~-----~p~~i~~l~~L~~l~l~~~~L  270 (397)
                       ...++|++|++++|.+..     ++..+...++|++|+++ +|....     ++..+...++|+++++++|.+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls-~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL-HTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT-TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC-CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence             234667777777775443     44445666677777776 554321     223344555666666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=3.8e-09  Score=97.70  Aligned_cols=240  Identities=11%  Similarity=0.029  Sum_probs=137.4

Q ss_pred             CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccC----
Q 045321          135 SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCT----  209 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~----  209 (397)
                      ...+++.|.+.+.-..    ..+..+-..+++|++|||++|.+......-+.+..++++.+..+   ++|+ .+.+    
T Consensus        23 ~~~~l~~L~l~g~i~~----~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~   95 (329)
T 3sb4_A           23 EANSITHLTLTGKLNA----EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHHCSEEEEEEEECH----HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETT
T ss_pred             hhCceeEEEEeccccH----HHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccc
Confidence            4567888888765321    13344423378899999999998722211222333455555554   3332 3455    


Q ss_pred             ----CCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCC---------------
Q 045321          210 ----ILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNP---------------  268 (397)
Q Consensus       210 ----l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~---------------  268 (397)
                          +++|+.+++.. .+..+++. +..+++|+.+++. .+....+++. +....++..+.....               
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~-~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIR-KKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBC-CSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcC-CCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                89999999998 88888765 8999999999999 7765555543 555555555544331               


Q ss_pred             ---eee----EE-eccHHhhh----------------------------cCCCCCcEEEeecCCCeeEEEe-ccCCCCCC
Q 045321          269 ---NLS----CY-HSGVSNSL----------------------------LGLHKLECLKLVNESKLSRVVL-SKYQFPLS  311 (397)
Q Consensus       269 ---~L~----i~-~~~~~~~l----------------------------~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~  311 (397)
                         .+.    +. ...++..+                            ..+++|+.+++.. .+++.+.- .|.. +++
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~~-~~~  251 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFAQ-KKY  251 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTTT-CTT
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhhC-CCC
Confidence               000    00 01111111                            0144555555543 22444432 3455 778


Q ss_pred             ceEEEEecccCCCCCccccccCcCCc-eEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEE-CCCcccccccc
Q 045321          312 LSHLSLSNTELMQDPMPIMEKLPRLQ-VLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTM-GAGAMPKLESL  389 (397)
Q Consensus       312 L~~L~L~~~~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L  389 (397)
                      |+++++..+ +.......|.++++|+ .+.+.. .  ...+......++++|+.+.+.+ ..++.++. ....+++|+.+
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~--l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S--VTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T--CCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred             CCEEECCcc-cceehHHHhhCChhccEEEEEcc-c--ceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence            888888776 4444455677888888 888844 2  1222222256677788888765 24565542 22345566655


Q ss_pred             c
Q 045321          390 I  390 (397)
Q Consensus       390 ~  390 (397)
                      .
T Consensus       327 y  327 (329)
T 3sb4_A          327 Y  327 (329)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.71  E-value=3.1e-07  Score=87.09  Aligned_cols=190  Identities=8%  Similarity=0.043  Sum_probs=93.2

Q ss_pred             eeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecC
Q 045321          166 YLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGS  243 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~  243 (397)
                      .|+.+.+.. .++.++ ..+.++.+|+.+++..+.+..+|.......+|+.+.+..+ +..++.. +..+++|+.+++. 
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~-  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP-  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC-
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC-
Confidence            356666554 344333 3455666666666666666666655444566666666532 4444432 5556666666665 


Q ss_pred             CCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCC----CeeEEEe-ccCCCCCCceEEEE
Q 045321          244 ITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNES----KLSRVVL-SKYQFPLSLSHLSL  317 (397)
Q Consensus       244 ~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~----~L~~L~l-~~~~~l~~L~~L~L  317 (397)
                      .. ...++.. +.+ .+|+.+.+..+ +   ...-...+..+++|+.+.+.+..    .+..+.- .|.. +++|+.+++
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-c~~L~~l~l  307 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKLPNG-V---TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-CPKLARFEI  307 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEEETT-C---CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-CTTCCEECC
T ss_pred             CC-ccCcccccccc-CCccEEEeCCC-c---cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-CccCCeEEe
Confidence            32 2223322 222 45555555432 1   11113345566666666665410    1112211 3334 666666666


Q ss_pred             ecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecC
Q 045321          318 SNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM  370 (397)
Q Consensus       318 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  370 (397)
                      ..+ +.......+.++++|+.+.|..+ .  ..+......++ +|+.+.+.+.
T Consensus       308 ~~~-i~~I~~~aF~~c~~L~~l~lp~~-l--~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          308 PES-IRILGQGLLGGNRKVTQLTIPAN-V--TQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             CTT-CCEECTTTTTTCCSCCEEEECTT-C--CEECTTSSSSS-CCCEEEECCS
T ss_pred             CCc-eEEEhhhhhcCCCCccEEEECcc-c--cEEcHHhCCCC-CCCEEEEcCC
Confidence            632 33333444666677777777332 1  11111113444 6777776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.70  E-value=6.7e-07  Score=84.81  Aligned_cols=230  Identities=11%  Similarity=0.085  Sum_probs=153.0

Q ss_pred             CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccC-ccccCCCC
Q 045321          136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLP-SLLCTILN  212 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~  212 (397)
                      +..++.+.+.+.-.      .+ ...|.++ .|+.+.+..+ ++.++. ++.+ .+|+.+.+.. .++.++ ..+.++.+
T Consensus       112 ~~~l~~i~ip~~i~------~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~  181 (401)
T 4fdw_A          112 LKGYNEIILPNSVK------SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYN  181 (401)
T ss_dssp             CSSCSEEECCTTCC------EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTT
T ss_pred             cCCccEEEECCccC------EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCccc
Confidence            45666666655422      44 4444665 6999998766 665653 4555 4799999976 677665 45788999


Q ss_pred             CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccH-HhhhcCCCCCcEE
Q 045321          213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGV-SNSLLGLHKLECL  290 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~-~~~l~~l~~L~~L  290 (397)
                      |+.+++..+.+..+|...-...+|+.+.+. .. ...++. .+.++++|+.+.+..+ +    ..+ ...+.. .+|+.+
T Consensus       182 L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~-l~~I~~~aF~~~~~L~~l~l~~~-l----~~I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          182 LKKADLSKTKITKLPASTFVYAGIEEVLLP-VT-LKEIGSQAFLKTSQLKTIEIPEN-V----STIGQEAFRE-SGITTV  253 (401)
T ss_dssp             CCEEECTTSCCSEECTTTTTTCCCSEEECC-TT-CCEECTTTTTTCTTCCCEECCTT-C----CEECTTTTTT-CCCSEE
T ss_pred             CCeeecCCCcceEechhhEeecccCEEEeC-Cc-hheehhhHhhCCCCCCEEecCCC-c----cCcccccccc-CCccEE
Confidence            999999999999998874446899999997 54 444443 4778899999998775 1    212 233444 688999


Q ss_pred             EeecCCCeeEEEe-ccCCCCCCceEEEEecccCC-----CCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCE
Q 045321          291 KLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELM-----QDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTV  364 (397)
Q Consensus       291 ~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~  364 (397)
                      .+.  .+++.+.- .|.. +++|+.+++.++...     ......+.++++|+.+.|.. ..  ..+......++++|+.
T Consensus       254 ~lp--~~i~~I~~~aF~~-c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i--~~I~~~aF~~c~~L~~  327 (401)
T 4fdw_A          254 KLP--NGVTNIASRAFYY-CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI--RILGQGLLGGNRKVTQ  327 (401)
T ss_dssp             EEE--TTCCEECTTTTTT-CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC--CEECTTTTTTCCSCCE
T ss_pred             EeC--CCccEEChhHhhC-CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce--EEEhhhhhcCCCCccE
Confidence            885  45666643 4566 999999999988653     13345678899999999953 22  2222222566789999


Q ss_pred             EEEecCCCcCcEEEC-CCccccccccccc
Q 045321          365 LHLKSMYWQDEWTMG-AGAMPKLESLIVN  392 (397)
Q Consensus       365 L~l~~~~~l~~~~~~-~~~~p~L~~L~i~  392 (397)
                      +.+..  ++..+... ...+ +|+.+.+.
T Consensus       328 l~lp~--~l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          328 LTIPA--NVTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             EEECT--TCCEECTTSSSSS-CCCEEEEC
T ss_pred             EEECc--cccEEcHHhCCCC-CCCEEEEc
Confidence            99854  34444211 2233 55555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.69  E-value=3.9e-08  Score=91.51  Aligned_cols=89  Identities=13%  Similarity=0.058  Sum_probs=60.6

Q ss_pred             chhHHhcCCCeeEEEEcCC-CCccccc-ccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhhhhc
Q 045321          156 DCENFCEKFKYLRLLNLGY-AVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLEDIWM  232 (397)
Q Consensus       156 ~l~~~~~~l~~Lr~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~~~~  232 (397)
                      .++. +..+++|++|+|++ |.+..+| ..++++.+|++|+|++|.+..+|+ .++++++|++|+|++|.+..+|..+..
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  101 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence            3444 47777777777775 7777665 457777777777777777776654 457777777777777777777765433


Q ss_pred             cccCcEEEecCCCC
Q 045321          233 MQKLMHLNFGSITL  246 (397)
Q Consensus       233 L~~L~~L~l~~~~~  246 (397)
                      ..+|+.|++. ++.
T Consensus       102 ~~~L~~l~l~-~N~  114 (347)
T 2ifg_A          102 GLSLQELVLS-GNP  114 (347)
T ss_dssp             SCCCCEEECC-SSC
T ss_pred             cCCceEEEee-CCC
Confidence            3347777776 543

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.64  E-value=3.7e-08  Score=98.54  Aligned_cols=82  Identities=23%  Similarity=0.283  Sum_probs=70.5

Q ss_pred             cccccccchhhhHHHHhhhccCCCCCccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCceeeEecCCCCceeEEEe
Q 045321            7 RTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYV   86 (397)
Q Consensus         7 L~lSY~~L~~~lk~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~m   86 (397)
                      ++.||+.||++.|.||+++|+||+|+.|+.+.++.+|.++       .+.++.++++|++++|++....   +....|+|
T Consensus       368 l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~  437 (591)
T 1z6t_A          368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYL  437 (591)
T ss_dssp             HHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEEC
T ss_pred             HHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CCccEEEE
Confidence            5899999999999999999999999999999999999653       3457889999999999996543   33467999


Q ss_pred             CHHHHHHHHHHh
Q 045321           87 PSLVYYSLLLVA   98 (397)
Q Consensus        87 hdli~dl~~~~~   98 (397)
                      |++++++++...
T Consensus       438 H~lv~~~~~~~~  449 (591)
T 1z6t_A          438 HDLQVDFLTEKN  449 (591)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             cHHHHHHHHhhh
Confidence            999999998773

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.54  E-value=3.3e-08  Score=92.94  Aligned_cols=153  Identities=14%  Similarity=0.070  Sum_probs=106.8

Q ss_pred             CCCeEEEEEEeCccchh----hcc---CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccc-----cc
Q 045321          114 LANVKRCFILEDLIEFI----FLE---QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQ-----FP  181 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~----~~~---~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~-----lp  181 (397)
                      ...++.+.+..+.....    ...   ...++|++|.+.++....   ..+..+...+++|+.|++++|.+..     +.
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP---AGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH---HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH---HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            34566777764443321    111   245799999999998753   1223444556789999999999863     22


Q ss_pred             ccc-cCCCCCceEecCCCCCcc-----cCccccCCCCCcEEecCCccccc-----chhhhhccccCcEEEecCCCCCCC-
Q 045321          182 LGL-ENLILLKHLKLNIPSLKC-----LPSLLCTILNLQTLEMPSSYVDH-----SLEDIWMMQKLMHLNFGSITLPAP-  249 (397)
Q Consensus       182 ~~~-~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~-  249 (397)
                      ..+ ....+|++|++++|.+..     ++..+...++|++|++++|.+..     ++..+...++|+.|+++ +|.+.. 
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls-~N~i~~~  226 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA-YNGAGDT  226 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC-SSCCCHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC-CCCCCHH
Confidence            223 246789999999999864     56667788999999999996654     45667788899999999 876542 


Q ss_pred             ----CCccccCCCCCcEEEcCCCee
Q 045321          250 ----PKNYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       250 ----~p~~i~~l~~L~~l~l~~~~L  270 (397)
                          ++..+...++|+++++++|.+
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCC
Confidence                233455668888888888865

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.44  E-value=7.3e-08  Score=89.97  Aligned_cols=138  Identities=17%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             chhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhc--CCCCCcEEEeecC-------C
Q 045321          226 SLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLL--GLHKLECLKLVNE-------S  296 (397)
Q Consensus       226 lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~--~l~~L~~L~l~~~-------~  296 (397)
                      ++..+..+++|+.|.+. ++....++. +. +.+|+.|.+..|.+   .......+.  .+++|++|+++.+       .
T Consensus       164 L~~ll~~~P~L~~L~L~-g~~~l~l~~-~~-~~~L~~L~L~~~~l---~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~  237 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIK-GTNNLSIGK-KP-RPNLKSLEIISGGL---PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG  237 (362)
T ss_dssp             CHHHHHTCTTCCEEEEE-CCBTCBCCS-CB-CTTCSEEEEECSBC---CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred             HHHHHhcCCCCcEEEEe-CCCCceecc-cc-CCCCcEEEEecCCC---ChHHHHHHHHccCCCCcEEEEeccccccccch
Confidence            44445556666666666 543233333 22 55666666655533   222223332  5666666666421       1


Q ss_pred             CeeEEEe--ccCCCCCCceEEEEecccCCCCCcccc---ccCcCCceEEEecccccCceeE--EeCCCCCCCCCEEEEec
Q 045321          297 KLSRVVL--SKYQFPLSLSHLSLSNTELMQDPMPIM---EKLPRLQVLKLKQNSYLGRKLA--CVGSSSFPKLTVLHLKS  369 (397)
Q Consensus       297 ~L~~L~l--~~~~~l~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~~L~~L~l~~  369 (397)
                      .++.+.-  .... +|+|++|++.+|.+.......+   ..+|+|++|+|+.|...+....  ..+...+++|+.|++++
T Consensus       238 ~~~~l~~~l~~~~-~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          238 DMNVFRPLFSKDR-FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             CGGGTGGGSCTTT-CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             hHHHHHHHHhcCC-CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            1111100  1123 5677777776665432111112   2356677777755544332110  00012356677777665


Q ss_pred             C
Q 045321          370 M  370 (397)
Q Consensus       370 ~  370 (397)
                      |
T Consensus       317 n  317 (362)
T 2ra8_A          317 N  317 (362)
T ss_dssp             B
T ss_pred             C
Confidence            5

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.26  E-value=1.3e-07  Score=78.16  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=44.0

Q ss_pred             CceEEEEecccCCCCCccccccCcCCceEEEecccc-cCceeEEeCCCC----CCCCCEEEEecCCCcCcEE-ECCCccc
Q 045321          311 SLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSY-LGRKLACVGSSS----FPKLTVLHLKSMYWQDEWT-MGAGAMP  384 (397)
Q Consensus       311 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~-~~~~~~p  384 (397)
                      .|++|++++|.++...+..+..+++|++|+|+++.. .+..+..  +..    .++|+.|++++|++++.-. .....+|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            466666666666555566666666666666655432 2222111  112    2356666666666555311 1112456


Q ss_pred             cccccccccccC
Q 045321          385 KLESLIVNPCAY  396 (397)
Q Consensus       385 ~L~~L~i~~C~~  396 (397)
                      +|+.|++++||+
T Consensus       140 ~L~~L~L~~c~~  151 (176)
T 3e4g_A          140 NLKYLFLSDLPG  151 (176)
T ss_dssp             TCCEEEEESCTT
T ss_pred             CCCEEECCCCCC
Confidence            666666666664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.21  E-value=1.7e-06  Score=72.75  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=48.4

Q ss_pred             CCCCCeeEEEEeCC-CCccccccchhHHhcCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCcc-----
Q 045321          134 QSGMYLQSFLNHSS-ESDHLALIDCENFCEKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLKC-----  202 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~-~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~~-----  202 (397)
                      ...+.|++|.+.++ .........+...+...+.|++|+|++|.+.     .+...+....+|++|++++|.|..     
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            44555555555554 4332111222222244455555555555544     122333344455555555555432     


Q ss_pred             cCccccCCCCCcEEec--CCccccc-----chhhhhccccCcEEEec
Q 045321          203 LPSLLCTILNLQTLEM--PSSYVDH-----SLEDIWMMQKLMHLNFG  242 (397)
Q Consensus       203 lp~~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~L~~L~~L~l~  242 (397)
                      +...+...+.|++|++  ++|.+..     +...+...++|++|+++
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence            3344444455555555  4443322     22333334445555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.16  E-value=1.7e-06  Score=72.69  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=80.2

Q ss_pred             hhHHhcCCCeeEEEEcCCC-Ccc-----cccccccCCCCCceEecCCCCCcc-----cCccccCCCCCcEEecCCccccc
Q 045321          157 CENFCEKFKYLRLLNLGYA-VLD-----QFPLGLENLILLKHLKLNIPSLKC-----LPSLLCTILNLQTLEMPSSYVDH  225 (397)
Q Consensus       157 l~~~~~~l~~Lr~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~~  225 (397)
                      +..++...+.|++|++++| .+.     .+...+....+|++|++++|.+..     +...+...++|++|++++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3455588999999999999 776     355667778899999999998853     55566677889999999996654


Q ss_pred             -----chhhhhccccCcEEEe--cCCCCCCC-----CCccccCCCCCcEEEcCCCe
Q 045321          226 -----SLEDIWMMQKLMHLNF--GSITLPAP-----PKNYSSSLKNLIFISALNPN  269 (397)
Q Consensus       226 -----lp~~~~~L~~L~~L~l--~~~~~~~~-----~p~~i~~l~~L~~l~l~~~~  269 (397)
                           +...+...++|++|++  + ++....     +...+...++|+.+++++|.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~-~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQ-SQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCC-SSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHhCCCceEEEecCC-CCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                 5566777788999998  5 454321     22234445667777776663

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.13  E-value=1.9e-06  Score=80.41  Aligned_cols=153  Identities=18%  Similarity=0.178  Sum_probs=72.9

Q ss_pred             cccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccc-hhhhh--ccccCcEEEecCCC---CC-C----CCC
Q 045321          183 GLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS-LEDIW--MMQKLMHLNFGSIT---LP-A----PPK  251 (397)
Q Consensus       183 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~--~L~~L~~L~l~~~~---~~-~----~~p  251 (397)
                      .+..+++|+.|+++++.-..+|. + .+++|++|++..|.+..- ...+.  .+++|++|++. .+   .. .    .+.
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~-~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY-VGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE-CBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe-ccccccccchhHHHHH
Confidence            34455666666665542123333 2 256666666665533221 11222  56666666663 21   00 0    011


Q ss_pred             ccc--cCCCCCcEEEcCCCeeeEEeccHHhhh---cCCCCCcEEEeecCCCeeE-----EEeccCCCCCCceEEEEeccc
Q 045321          252 NYS--SSLKNLIFISALNPNLSCYHSGVSNSL---LGLHKLECLKLVNESKLSR-----VVLSKYQFPLSLSHLSLSNTE  321 (397)
Q Consensus       252 ~~i--~~l~~L~~l~l~~~~L~i~~~~~~~~l---~~l~~L~~L~l~~~~~L~~-----L~l~~~~~l~~L~~L~L~~~~  321 (397)
                      ..+  +.+++|+.|.+.+|.+   .+.....+   ..+++|+.|+++.+ .+..     +.-.+.. +++|+.|+++.|.
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i---~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~  318 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEE---QNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDK-IKHLKFINMKYNY  318 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTT---HHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHH-HTTCSEEECCSBB
T ss_pred             HHHhcCCCCCcCEEeCCCCCC---chHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhccc-CCcceEEECCCCc
Confidence            111  2356666666665533   12122222   24567777777653 2221     1001123 6788899998887


Q ss_pred             CCCCCcccccc-CcCCceEEEeccc
Q 045321          322 LMQDPMPIMEK-LPRLQVLKLKQNS  345 (397)
Q Consensus       322 l~~~~~~~l~~-l~~L~~L~L~~~~  345 (397)
                      +.......+.. +  ...++++.+.
T Consensus       319 i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          319 LSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCHHHHHHHHHHc--CCEEEecCCc
Confidence            65444444443 3  3456665443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.93  E-value=1.3e-05  Score=71.11  Aligned_cols=80  Identities=24%  Similarity=0.090  Sum_probs=57.7

Q ss_pred             cCCCeeEEEEcCCCCcccc---cccccCCCCCceEecCCCCCcccCccccCCC--CCcEEecCCccccc-ch-------h
Q 045321          162 EKFKYLRLLNLGYAVLDQF---PLGLENLILLKHLKLNIPSLKCLPSLLCTIL--NLQTLEMPSSYVDH-SL-------E  228 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~l~~-lp-------~  228 (397)
                      .+++.|++|+|++|.+..+   |..++.+++|++|+|++|.+..+ .++..+.  +|++|++++|.+.. +|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            5678888888888887744   35566788888888888888766 3455555  88888888885542 33       2


Q ss_pred             hhhccccCcEEEec
Q 045321          229 DIWMMQKLMHLNFG  242 (397)
Q Consensus       229 ~~~~L~~L~~L~l~  242 (397)
                      .+..+++|+.|+-.
T Consensus       246 il~~~P~L~~LDg~  259 (267)
T 3rw6_A          246 IRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHCTTCCEESSC
T ss_pred             HHHHCcccCeECCc
Confidence            36778888888654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.80  E-value=5.2e-05  Score=62.51  Aligned_cols=77  Identities=12%  Similarity=0.072  Sum_probs=35.5

Q ss_pred             eeEEEEcCCCCccc-ccccccCCCCCceEecCCCC-Ccc-cCccccCC----CCCcEEecCCc-ccccch-hhhhccccC
Q 045321          166 YLRLLNLGYAVLDQ-FPLGLENLILLKHLKLNIPS-LKC-LPSLLCTI----LNLQTLEMPSS-YVDHSL-EDIWMMQKL  236 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~-i~~-lp~~~~~l----~~L~~L~l~~~-~l~~lp-~~~~~L~~L  236 (397)
                      .|+.||+++|.++. -...+.++++|++|++++|. ++. --..++.+    ++|++|++++| +++.-- ..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            46667776666552 12344555556666665553 331 00122222    24555555555 343311 123444555


Q ss_pred             cEEEec
Q 045321          237 MHLNFG  242 (397)
Q Consensus       237 ~~L~l~  242 (397)
                      ++|+++
T Consensus       142 ~~L~L~  147 (176)
T 3e4g_A          142 KYLFLS  147 (176)
T ss_dssp             CEEEEE
T ss_pred             CEEECC
Confidence            555555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.77  E-value=0.00017  Score=68.00  Aligned_cols=200  Identities=15%  Similarity=0.075  Sum_probs=95.9

Q ss_pred             hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccC-ccccCCCCCcEEecCCcccccchhhhhcccc
Q 045321          158 ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVDHSLEDIWMMQK  235 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~  235 (397)
                      ...|..++.|+.+.+.++. ..++ ..+.++.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+ ...+........+
T Consensus       155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~-~~~i~~~~~~~~~  231 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS-LYYLGDFALSKTG  231 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCC
T ss_pred             hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC-ceEeehhhcccCC
Confidence            3445778888888876543 3232 45667777777777654 44433 23455666666655443 1111222222345


Q ss_pred             CcEEEecCCCCCCCCC-ccccCCCCCcEEEcCCCeeeEEe-----------------ccHHhhhcCCCCCcEEEeecCCC
Q 045321          236 LMHLNFGSITLPAPPK-NYSSSLKNLIFISALNPNLSCYH-----------------SGVSNSLLGLHKLECLKLVNESK  297 (397)
Q Consensus       236 L~~L~l~~~~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~-----------------~~~~~~l~~l~~L~~L~l~~~~~  297 (397)
                      |+.+.+. ... ..+. ..+..+.+|+.+.+..+...+..                 ......+..+.+|+.+.+.  .+
T Consensus       232 l~~i~ip-~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~--~~  307 (394)
T 4fs7_A          232 VKNIIIP-DSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLL--DS  307 (394)
T ss_dssp             CCEEEEC-TTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEEC--TT
T ss_pred             CceEEEC-CCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccc--cc
Confidence            5555554 221 1111 12334455555444433111100                 0011223344555555553  23


Q ss_pred             eeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEec
Q 045321          298 LSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKS  369 (397)
Q Consensus       298 L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~  369 (397)
                      ++.+.- .+.. +.+|+.++|..+ +.......+.++.+|+.+.+..+ .  ..+......++++|+.+.+..
T Consensus       308 i~~I~~~aF~~-c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          308 VKFIGEEAFES-CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L--RKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEECTTTTTT-CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C--CEECTTTBTTCTTCCEEEEEG
T ss_pred             cceechhhhcC-CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c--cEehHHHhhCCCCCCEEEECC
Confidence            333321 3444 677777777543 32333445677788888777432 1  111111144566677776653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.75  E-value=0.00079  Score=63.38  Aligned_cols=56  Identities=13%  Similarity=0.071  Sum_probs=31.1

Q ss_pred             CCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEe
Q 045321          309 PLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLK  368 (397)
Q Consensus       309 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~  368 (397)
                      +.+|+.+.+..+ +.......+.++.+|+.+.|..+ .  ..+......++.+|+.+.+.
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v--~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V--EEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C--CEECTTTTTTCTTCCEECCC
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-c--cEEhHHhccCCCCCCEEEEC
Confidence            667777777654 22223344667788888877322 1  12211124456677777664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.57  E-value=0.0018  Score=60.97  Aligned_cols=57  Identities=12%  Similarity=0.124  Sum_probs=25.7

Q ss_pred             CCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEec
Q 045321          309 PLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKS  369 (397)
Q Consensus       309 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~  369 (397)
                      +.+|+.++|..+ +....-..+.++.+|+.+.|..+-.   .+......++++|+.+.+.+
T Consensus       310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~---~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVT---KIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCC---BCCGGGGTTCTTCCEEEESS
T ss_pred             CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccC---EEhHhHhhCCCCCCEEEECC
Confidence            556666666443 2222223455566666666632211   11111134555666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.50  E-value=2.5e-05  Score=69.26  Aligned_cols=60  Identities=23%  Similarity=0.214  Sum_probs=37.7

Q ss_pred             cCCCCCceEecCCCCCccc---CccccCCCCCcEEecCCcccccchhhhhccc--cCcEEEecCCCC
Q 045321          185 ENLILLKHLKLNIPSLKCL---PSLLCTILNLQTLEMPSSYVDHSLEDIWMMQ--KLMHLNFGSITL  246 (397)
Q Consensus       185 ~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~--~L~~L~l~~~~~  246 (397)
                      .++++|+.|+|++|.+..+   |..+..+++|++|+|++|.+..+. .+..+.  +|+.|++. ++.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~-~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLD-GNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECT-TST
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEcc-CCc
Confidence            3566777777777776543   345556777777777777666552 244444  67777776 554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.99  E-value=0.014  Score=54.64  Aligned_cols=80  Identities=10%  Similarity=0.119  Sum_probs=45.7

Q ss_pred             hhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCC
Q 045321          280 SLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSS  358 (397)
Q Consensus       280 ~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~  358 (397)
                      .+..+.+|+.+.+.  .+++.+.- .|.. +.+|+.+.+..+ +.......+.++++|+.+.+.++.....    . ...
T Consensus       306 aF~~c~~L~~i~lp--~~v~~I~~~aF~~-C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~----~-~~~  376 (394)
T 4gt6_A          306 VFAGCISLKSIDIP--EGITQILDDAFAG-CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN----A-IST  376 (394)
T ss_dssp             TTTTCTTCCEEECC--TTCCEECTTTTTT-CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH----T-CBC
T ss_pred             eecCCCCcCEEEeC--CcccEehHhHhhC-CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh----h-hhc
Confidence            44555666666664  23444422 4556 899999999765 4444556788999999999965432211    1 334


Q ss_pred             CCCCCEEEEe
Q 045321          359 FPKLTVLHLK  368 (397)
Q Consensus       359 ~~~L~~L~l~  368 (397)
                      +..|+.+.+.
T Consensus       377 ~~~L~~i~i~  386 (394)
T 4gt6_A          377 DSGLQNLPVA  386 (394)
T ss_dssp             CCCC------
T ss_pred             cCCCCEEEeC
Confidence            5566666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.73  E-value=0.067  Score=49.61  Aligned_cols=74  Identities=9%  Similarity=-0.093  Sum_probs=34.5

Q ss_pred             CCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCc
Q 045321          115 ANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLK  191 (397)
Q Consensus       115 ~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~  191 (397)
                      .+++.+.+. .....+...  ..+.+|+++.+...-.      .+ ...|..+ .|..+.+..+ ++.++.......+|+
T Consensus        46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~v~------~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~  116 (379)
T 4h09_A           46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVASTVT------SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD  116 (379)
T ss_dssp             GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTTCC------EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred             cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCcce------EechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence            456666665 443333333  5666777776643311      33 3333554 3444444322 333333222223566


Q ss_pred             eEecCC
Q 045321          192 HLKLNI  197 (397)
Q Consensus       192 ~L~l~~  197 (397)
                      .+.+..
T Consensus       117 ~i~lp~  122 (379)
T 4h09_A          117 DFEFPG  122 (379)
T ss_dssp             EEECCT
T ss_pred             cccCCC
Confidence            666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.46  E-value=0.052  Score=50.34  Aligned_cols=33  Identities=12%  Similarity=0.163  Sum_probs=19.4

Q ss_pred             CCCceEEEEecccCCCCCccccccCcCCceEEE
Q 045321          309 PLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKL  341 (397)
Q Consensus       309 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L  341 (397)
                      +.+|+.+.+.++.+.......+.++.+|+.+.|
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            566666666655443333344566666666666

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.40  E-value=0.027  Score=43.77  Aligned_cols=51  Identities=24%  Similarity=0.307  Sum_probs=37.1

Q ss_pred             EEEcCCCCcc--cccccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCc
Q 045321          169 LLNLGYAVLD--QFPLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSS  221 (397)
Q Consensus       169 ~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~  221 (397)
                      +++.++..++  .+|..+.  .+|++|+|++|.|+.+|.. +..+++|++|+|.+|
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            5677777777  7775443  4678888888888887754 466778888888776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.37  E-value=0.021  Score=47.77  Aligned_cols=86  Identities=10%  Similarity=0.015  Sum_probs=39.7

Q ss_pred             CCCCCeeEEEEeCC-CCccccccch-hHHhcCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCc-----
Q 045321          134 QSGMYLQSFLNHSS-ESDHLALIDC-ENFCEKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLK-----  201 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~-~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~-----  201 (397)
                      ..-+.|+.|.+.++ .+.......+ ..+ ..-+.|+.|+|++|.|.     .+-..+..-..|+.|+|++|.|.     
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            34455555655543 3321111223 233 44555666666666654     22233333445566666555553     


Q ss_pred             ccCccccCCCCCcEEecCC
Q 045321          202 CLPSLLCTILNLQTLEMPS  220 (397)
Q Consensus       202 ~lp~~~~~l~~L~~L~l~~  220 (397)
                      .+-+.+..-+.|++|++++
T Consensus       117 ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHhhCCceeEEECCC
Confidence            1333344444455555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.81  E-value=0.043  Score=42.57  Aligned_cols=52  Identities=12%  Similarity=0.160  Sum_probs=40.2

Q ss_pred             ceEecCCCCCc--ccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321          191 KHLKLNIPSLK--CLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT  245 (397)
Q Consensus       191 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~  245 (397)
                      ..++-++.+++  .+|..+.  .+|++|+|++|.+..+|.. +..+++|+.|++. ++
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N   65 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG-AN   65 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC-SS
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec-CC
Confidence            36777777787  8886543  4688999999988888875 6778888888888 54

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.75  E-value=0.074  Score=44.41  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             hhHHhcCCCeeEEEEcCCC-Ccc-----cccccccCCCCCceEecCCCCCc-----ccCccccCCCCCcEEecCCccccc
Q 045321          157 CENFCEKFKYLRLLNLGYA-VLD-----QFPLGLENLILLKHLKLNIPSLK-----CLPSLLCTILNLQTLEMPSSYVDH  225 (397)
Q Consensus       157 l~~~~~~l~~Lr~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~  225 (397)
                      +..+..+-+.|+.|+|+++ .|.     .+-..+..-..|+.|+|++|.|.     .+.+.+..-+.|++|+|++|.+..
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3555577788999999986 665     34456666778999999998875     345556667788999998885543


Q ss_pred             -----chhhhhccccCcEEEec
Q 045321          226 -----SLEDIWMMQKLMHLNFG  242 (397)
Q Consensus       226 -----lp~~~~~L~~L~~L~l~  242 (397)
                           +-..+..-+.|+.|+++
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~  134 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKAD  134 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECC
T ss_pred             HHHHHHHHHHhhCCceeEEECC
Confidence                 33344445568888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.3
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.08
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.04
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.92
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.83
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.79
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.99
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.36
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.77

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=2.4e-19  Score=163.38  Aligned_cols=247  Identities=14%  Similarity=0.119  Sum_probs=173.7

Q ss_pred             CCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCC-CCcc-cccccccCCCCCceEecCCCCCccc-CccccCCCC
Q 045321          136 GMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGY-AVLD-QFPLGLENLILLKHLKLNIPSLKCL-PSLLCTILN  212 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~  212 (397)
                      ..+++.|.+.++...+  ...+++-+.++++|++|++++ +.+. .+|++++++.+|++|++++|++..+ |..+..+.+
T Consensus        49 ~~~v~~L~L~~~~l~g--~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             cEEEEEEECCCCCCCC--CCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            3467778887776542  113433348899999999986 5666 7898999999999999999888754 455788889


Q ss_pred             CcEEecCCc-ccccchhhhhccccCcEEEecCCCCC-CCCCccccCCCCC-cEEEcCCCeeeEEeccHHhhhcCCCCCcE
Q 045321          213 LQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSITLP-APPKNYSSSLKNL-IFISALNPNLSCYHSGVSNSLLGLHKLEC  289 (397)
Q Consensus       213 L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~-~~~p~~i~~l~~L-~~l~l~~~~L~i~~~~~~~~l~~l~~L~~  289 (397)
                      |+++++++| ....+|..++++++|++++++ ++.. ..+|..++.+..+ +.+.++++.+   ....+..+..+..+ .
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~-~n~l~~~ip~~~~~l~~l~~~l~~~~n~l---~~~~~~~~~~l~~~-~  201 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDSYGSFSKLFTSMTISRNRL---TGKIPPTFANLNLA-F  201 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGGGGCCCTTCCEEECCSSEE---EEECCGGGGGCCCS-E
T ss_pred             hcccccccccccccCchhhccCcccceeecc-ccccccccccccccccccccccccccccc---cccccccccccccc-c
Confidence            999999988 566678889999999999998 7653 3678888888776 6688888766   34455566665544 4


Q ss_pred             EEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEec
Q 045321          290 LKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKS  369 (397)
Q Consensus       290 L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~  369 (397)
                      +++..+.....++.++.. +++++.+++++|.+. ..++.++.+++|+.|+|++|.+.+. ++.. ++.+++|++|++++
T Consensus       202 l~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~l~-~~~~~~~~~~~L~~L~Ls~N~l~g~-iP~~-l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRIYGT-LPQG-LTQLKFLHSLNVSF  277 (313)
T ss_dssp             EECCSSEEEECCGGGCCT-TSCCSEEECCSSEEC-CBGGGCCCCTTCCEEECCSSCCEEC-CCGG-GGGCTTCCEEECCS
T ss_pred             cccccccccccccccccc-ccccccccccccccc-ccccccccccccccccCccCeeccc-CChH-HhCCCCCCEEECcC
Confidence            666543211111114455 788888888888763 3456677888888888877776543 3333 57788888888887


Q ss_pred             CCCcC-cEEECCCcccccccccccccc
Q 045321          370 MYWQD-EWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       370 ~~~l~-~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      +. +. .+| ..+.+++|+.+.+.+.+
T Consensus       278 N~-l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         278 NN-LCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SE-EEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             Cc-ccccCC-CcccCCCCCHHHhCCCc
Confidence            53 44 444 34567888888877655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=9.4e-18  Score=156.72  Aligned_cols=255  Identities=18%  Similarity=0.150  Sum_probs=180.7

Q ss_pred             CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321          114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH  192 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~  192 (397)
                      ..++++|.+..+.... ..+ ..+++|++|.+.++...     .++.+ .++++|++|++++|.+..+++ ++++++|++
T Consensus        43 l~~l~~L~l~~~~I~~-l~gl~~L~nL~~L~Ls~N~l~-----~l~~l-~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~  114 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLT-----DITPL-KNLTKLVDILMNNNQIADITP-LANLTNLTG  114 (384)
T ss_dssp             HTTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             hCCCCEEECCCCCCCC-ccccccCCCCCEEeCcCCcCC-----CCccc-cCCcccccccccccccccccc-ccccccccc
Confidence            4567788777433333 445 67888999998888765     44455 888889999999888887654 788888888


Q ss_pred             EecCCCCCcccC----------------------------------------------------------------cccc
Q 045321          193 LKLNIPSLKCLP----------------------------------------------------------------SLLC  208 (397)
Q Consensus       193 L~l~~~~i~~lp----------------------------------------------------------------~~~~  208 (397)
                      |+++++.+..++                                                                ....
T Consensus       115 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            888765543221                                                                1234


Q ss_pred             CCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321          209 TILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE  288 (397)
Q Consensus       209 ~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~  288 (397)
                      .+++++.++++++.+..+++ .+..++|+.|+++ ++....++ .++.+++|+.+++++|.+    ..++ .++.+++|+
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~-~n~l~~~~-~l~~l~~L~~L~l~~n~l----~~~~-~~~~~~~L~  266 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP-LGILTNLDELSLN-GNQLKDIG-TLASLTNLTDLDLANNQI----SNLA-PLSGLTKLT  266 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECC-SSCCCCCG-GGGGCTTCSEEECCSSCC----CCCG-GGTTCTTCS
T ss_pred             cccccceeeccCCccCCCCc-ccccCCCCEEECC-CCCCCCcc-hhhcccccchhccccCcc----CCCC-cccccccCC
Confidence            56778888888877776654 4667788888888 77666554 677888888888887754    2222 367778888


Q ss_pred             EEEeecC-----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321          289 CLKLVNE-----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       289 ~L~l~~~-----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                      .|+++++           +.++.+..         .+.. +++++.|++++|.+..  .+.+..+++|++|++++|....
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~-~~~l~~L~ls~n~l~~--l~~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN-LKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGG-CTTCSEEECCSSCCSC--CGGGGGCTTCCEEECCSSCCCC
T ss_pred             EeeccCcccCCCCccccccccccccccccccccccccch-hcccCeEECCCCCCCC--CcccccCCCCCEEECCCCCCCC
Confidence            8888763           23444443         2333 7899999999998743  3458889999999997776543


Q ss_pred             ceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccc
Q 045321          349 RKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNP  393 (397)
Q Consensus       349 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~  393 (397)
                      .  + . ...+++|++|+++++ .+..++. ...+++|+.|+|++
T Consensus       344 l--~-~-l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         344 V--S-S-LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             C--G-G-GGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCC
T ss_pred             C--h-h-HcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCC
Confidence            2  2 2 567899999999986 4676643 56789999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.3e-18  Score=152.05  Aligned_cols=173  Identities=20%  Similarity=0.081  Sum_probs=106.2

Q ss_pred             CeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecC
Q 045321          165 KYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGS  243 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~  243 (397)
                      +.+++|+|++|.|+.+| ..+.++++|++|++++|.++++|. ++.+++|++|++++|.+...|..+..+++|+.|+++ 
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~-  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC-
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-
Confidence            45677777777777665 456677777777777777776653 466777777777777776666667777777777777 


Q ss_pred             CCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEeccc
Q 045321          244 ITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTE  321 (397)
Q Consensus       244 ~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~  321 (397)
                      ++....++. .+..+.+++.+.++++.+   ....+..+..+++|+.+++++ .+++.+.. .+.. +++|++|+|++|.
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l---~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~-l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNEL---KTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNG-LENLDTLLLQENS  183 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTT-CTTCCEEECCSSC
T ss_pred             ccccceeecccccccccccccccccccc---ceeccccccccccchhccccc-ccccccCcccccc-ccccceeecccCC
Confidence            665444433 345567777777776644   222233445556666666665 23443322 2344 6666666666666


Q ss_pred             CCCCCccccccCcCCceEEEeccc
Q 045321          322 LMQDPMPIMEKLPRLQVLKLKQNS  345 (397)
Q Consensus       322 l~~~~~~~l~~l~~L~~L~L~~~~  345 (397)
                      +. ..++.+..+++|+.|+|++|.
T Consensus       184 L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         184 LY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             Cc-ccChhHCCCCCCCEEEecCCC
Confidence            53 344445556666666665544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.2e-17  Score=154.09  Aligned_cols=238  Identities=18%  Similarity=0.165  Sum_probs=169.5

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNL  213 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L  213 (397)
                      .++.+|++|.+.++...     .++.+ ..+++|++|++++|.++.+|+ ++++++|++|++++|.+..+++ ++.+++|
T Consensus        41 ~~l~~l~~L~l~~~~I~-----~l~gl-~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L  112 (384)
T d2omza2          41 TDLDQVTTLQADRLGIK-----SIDGV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNL  112 (384)
T ss_dssp             HHHTTCCEEECCSSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             HHhCCCCEEECCCCCCC-----Ccccc-ccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-ccccccc
Confidence            45678999999988775     45556 889999999999999998875 8999999999999999998864 8999999


Q ss_pred             cEEecCCcccccchh----------------------------------------------------------------h
Q 045321          214 QTLEMPSSYVDHSLE----------------------------------------------------------------D  229 (397)
Q Consensus       214 ~~L~l~~~~l~~lp~----------------------------------------------------------------~  229 (397)
                      +.|++.++.+..++.                                                                .
T Consensus       113 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (384)
T d2omza2         113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV  192 (384)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence            999998774443322                                                                2


Q ss_pred             hhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC-----------CCe
Q 045321          230 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE-----------SKL  298 (397)
Q Consensus       230 ~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~-----------~~L  298 (397)
                      ...+++++.++++ ++....+++ .+..++|+.+++++|.+    ..+ ..+..+++|+.|+++++           ++|
T Consensus       193 ~~~l~~~~~l~l~-~n~i~~~~~-~~~~~~L~~L~l~~n~l----~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L  265 (384)
T d2omza2         193 LAKLTNLESLIAT-NNQISDITP-LGILTNLDELSLNGNQL----KDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKL  265 (384)
T ss_dssp             GGGCTTCSEEECC-SSCCCCCGG-GGGCTTCCEEECCSSCC----CCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             cccccccceeecc-CCccCCCCc-ccccCCCCEEECCCCCC----CCc-chhhcccccchhccccCccCCCCcccccccC
Confidence            3334555556555 544444332 45566777777776644    222 35677788888887763           455


Q ss_pred             eEEEe---------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEec
Q 045321          299 SRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKS  369 (397)
Q Consensus       299 ~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~  369 (397)
                      +.+.+         .+.. ++.++.+.+..|.+.  .+..+..+++++.|+++++...+..   . ...+++|++|++++
T Consensus       266 ~~L~l~~~~l~~~~~~~~-~~~l~~l~~~~n~l~--~~~~~~~~~~l~~L~ls~n~l~~l~---~-l~~l~~L~~L~L~~  338 (384)
T d2omza2         266 TELKLGANQISNISPLAG-LTALTNLELNENQLE--DISPISNLKNLTYLTLYFNNISDIS---P-VSSLTKLQRLFFAN  338 (384)
T ss_dssp             SEEECCSSCCCCCGGGTT-CTTCSEEECCSSCCS--CCGGGGGCTTCSEEECCSSCCSCCG---G-GGGCTTCCEEECCS
T ss_pred             CEeeccCcccCCCCcccc-ccccccccccccccc--cccccchhcccCeEECCCCCCCCCc---c-cccCCCCCEEECCC
Confidence            66655         2223 556666666666542  3445777889999999777665432   2 56799999999999


Q ss_pred             CCCcCcEEECCCcccccccccccccc
Q 045321          370 MYWQDEWTMGAGAMPKLESLIVNPCA  395 (397)
Q Consensus       370 ~~~l~~~~~~~~~~p~L~~L~i~~C~  395 (397)
                      | .++.++ ....+|+|++|++++|.
T Consensus       339 n-~l~~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         339 N-KVSDVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             S-CCCCCG-GGGGCTTCCEEECCSSC
T ss_pred             C-CCCCCh-hHcCCCCCCEEECCCCc
Confidence            8 577665 35678999999998764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=3.3e-18  Score=155.76  Aligned_cols=221  Identities=20%  Similarity=0.185  Sum_probs=175.9

Q ss_pred             CCeeEEEEcCCCCcc---cccccccCCCCCceEecCC-CCCc-ccCccccCCCCCcEEecCCcccccch-hhhhccccCc
Q 045321          164 FKYLRLLNLGYAVLD---QFPLGLENLILLKHLKLNI-PSLK-CLPSLLCTILNLQTLEMPSSYVDHSL-EDIWMMQKLM  237 (397)
Q Consensus       164 l~~Lr~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~  237 (397)
                      -.+++.|+|+++.+.   .+|++++++++|++|++++ |.+. .+|++++++++|++|++++|.+..++ ..+..+.+|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            347899999999876   6899999999999999997 6776 89999999999999999999777764 4588899999


Q ss_pred             EEEecCCCC-CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC-cEEEeecCCCeeEEEe-ccCCCCCCceE
Q 045321          238 HLNFGSITL-PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL-ECLKLVNESKLSRVVL-SKYQFPLSLSH  314 (397)
Q Consensus       238 ~L~l~~~~~-~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L-~~L~l~~~~~L~~L~l-~~~~~l~~L~~  314 (397)
                      +++++ .+. ...+|..+++++.|+.+++++|.+   ...+|..+..+..+ +.+.++. .++..... .+.. + ....
T Consensus       129 ~l~l~-~N~~~~~~p~~l~~l~~L~~l~l~~n~l---~~~ip~~~~~l~~l~~~l~~~~-n~l~~~~~~~~~~-l-~~~~  201 (313)
T d1ogqa_         129 TLDFS-YNALSGTLPPSISSLPNLVGITFDGNRI---SGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFAN-L-NLAF  201 (313)
T ss_dssp             EEECC-SSEEESCCCGGGGGCTTCCEEECCSSCC---EEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGG-C-CCSE
T ss_pred             ccccc-cccccccCchhhccCcccceeecccccc---cccccccccccccccccccccc-ccccccccccccc-c-cccc
Confidence            99999 664 667889999999999999999876   45678888888776 6677665 34444322 2232 3 4457


Q ss_pred             EEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccc
Q 045321          315 LSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPC  394 (397)
Q Consensus       315 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C  394 (397)
                      +++..+......+..++.+++++.+++.++...+..  .. .+.+++|+.|+++++.-...+|...+.+++|++|+++++
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~--~~-~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccccccccccc--cc-cccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            888888766667777889999999999777665432  23 577899999999987533367777788999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=1.2e-16  Score=144.75  Aligned_cols=238  Identities=17%  Similarity=0.090  Sum_probs=130.0

Q ss_pred             CCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCccc-------
Q 045321          137 MYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSLL-------  207 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~~-------  207 (397)
                      +++++|.++++...     .+ +..|.++++|++|+++++.+..+ |..+.++++|++|++++|+++.+|..+       
T Consensus        31 ~~l~~L~Ls~N~i~-----~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKIT-----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEE
T ss_pred             CCCCEEECcCCcCC-----CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhh
Confidence            34555555554433     33 22234555555555555554433 334455555555555555555554332       


Q ss_pred             ---------------cCCCCCcEEecCCcc---cccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCe
Q 045321          208 ---------------CTILNLQTLEMPSSY---VDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPN  269 (397)
Q Consensus       208 ---------------~~l~~L~~L~l~~~~---l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~  269 (397)
                                     .....++.++...+.   ....+..+..+++|+.+++. ++....+|..+  .++|+.++++++.
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~-~n~l~~l~~~~--~~~L~~L~l~~n~  182 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNITTIPQGL--PPSLTELHLDGNK  182 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-SSCCCSCCSSC--CTTCSEEECTTSC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc-cCCccccCccc--CCccCEEECCCCc
Confidence                           233344444444431   11122334555666666666 65555555433  4566666666653


Q ss_pred             eeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321          270 LSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG  348 (397)
Q Consensus       270 L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  348 (397)
                      .   ....+..+..++.++.|+++++ .+..+.. ++.. +++|++|+|++|.+. ..+..+..+++|++|+|++|....
T Consensus       183 ~---~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~-l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         183 I---TKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             C---CEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGG-STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             C---CCCChhHhhccccccccccccc-cccccccccccc-cccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            3   2334456667777777777663 4554432 4555 788888888888764 344567788888888887765432


Q ss_pred             ce---eE-EeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccc
Q 045321          349 RK---LA-CVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESL  389 (397)
Q Consensus       349 ~~---~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L  389 (397)
                      ..   +. .......++|+.|.+.+++ ++.++...++|+.++..
T Consensus       257 i~~~~f~~~~~~~~~~~L~~L~L~~N~-~~~~~~~~~~f~~~~~~  300 (305)
T d1xkua_         257 IGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVR  300 (305)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCG
T ss_pred             cChhhccCcchhcccCCCCEEECCCCc-CccCcCCHhHhcccccC
Confidence            21   00 0012345678888888765 55565666677766543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=6.6e-17  Score=146.42  Aligned_cols=222  Identities=16%  Similarity=0.169  Sum_probs=158.9

Q ss_pred             CeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhhhhccccCcEEEec
Q 045321          165 KYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFG  242 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~  242 (397)
                      +.+++|++++|.|+++|+ .+.++++|++|+++++.+..+ |..+.++++|++|++++|+++.+|...  ...++.|...
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhcc
Confidence            568888999988888875 578888899999988888876 456888888999999888888888643  3578888887


Q ss_pred             CCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC----------CCeeEEEe--------
Q 045321          243 SITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE----------SKLSRVVL--------  303 (397)
Q Consensus       243 ~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~----------~~L~~L~l--------  303 (397)
                       .+....++.. +.....+..+....+.... .......+..+++|+.+++.++          +++++|.+        
T Consensus       109 -~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         109 -ENEITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV  186 (305)
T ss_dssp             -SSCCCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred             -ccchhhhhhhhhhccccccccccccccccc-cCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCC
Confidence             6666555543 3445556666665542111 1233445677788888888764          46677766        


Q ss_pred             ---ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEEC-
Q 045321          304 ---SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMG-  379 (397)
Q Consensus       304 ---~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-  379 (397)
                         .+.. ++.++.|++++|.+.......+..+++|++|+|++|.+.  .++.. ...+++|++|+++++ .++.++.. 
T Consensus       187 ~~~~~~~-~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~--~lp~~-l~~l~~L~~L~Ls~N-~i~~i~~~~  261 (305)
T d1xkua_         187 DAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGG-LADHKYIQVVYLHNN-NISAIGSND  261 (305)
T ss_dssp             CTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTT-TTTCSSCCEEECCSS-CCCCCCTTS
T ss_pred             ChhHhhc-cccccccccccccccccccccccccccceeeeccccccc--ccccc-cccccCCCEEECCCC-ccCccChhh
Confidence               4455 788899999999876666677888999999999777654  33333 677899999999986 47766421 


Q ss_pred             ------CCcccccccccccccc
Q 045321          380 ------AGAMPKLESLIVNPCA  395 (397)
Q Consensus       380 ------~~~~p~L~~L~i~~C~  395 (397)
                            ....++|+.|++.+.|
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccCcchhcccCCCCEEECCCCc
Confidence                  2245788888888765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.5e-17  Score=142.78  Aligned_cols=174  Identities=19%  Similarity=0.089  Sum_probs=95.8

Q ss_pred             CCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcE
Q 045321          137 MYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQT  215 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~  215 (397)
                      ++++.|.+.++...     .+ +..|..+++|++|++++|.++.+|. ++.+++|++|++++|++...|..+..+++|++
T Consensus        31 ~~l~~L~Ls~N~i~-----~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV  104 (266)
T ss_dssp             TTCCEEECTTSCCS-----EEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCE
T ss_pred             cCCCEEECcCCcCC-----CcCHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            45666666665543     33 3333566666666666666655543 35566666666666666666665666666666


Q ss_pred             EecCCcccccchh-hhhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321          216 LEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV  293 (397)
Q Consensus       216 L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~  293 (397)
                      |+++++.+..++. .+..+.++++|++. ++....+|+. +..+++|+.+++++|.+   ....+..+..+++|++|+++
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~-~n~l~~l~~~~~~~l~~l~~l~l~~N~l---~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKLEKLSLANNNL---TELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSCC---SCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccceeecccccccccccccccc-ccccceeccccccccccchhcccccccc---cccCccccccccccceeecc
Confidence            6666664444433 24555666666666 5555454443 34456666666666544   23333445556666666666


Q ss_pred             cCCCeeEEEeccCCCCCCceEEEEecccC
Q 045321          294 NESKLSRVVLSKYQFPLSLSHLSLSNTEL  322 (397)
Q Consensus       294 ~~~~L~~L~l~~~~~l~~L~~L~L~~~~l  322 (397)
                      ++ .|+.++-.+.. +++|+.|+|++|++
T Consensus       181 ~N-~L~~lp~~~~~-~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         181 EN-SLYTIPKGFFG-SHLLPFAFLHGNPW  207 (266)
T ss_dssp             SS-CCCCCCTTTTT-TCCCSEEECCSCCB
T ss_pred             cC-CCcccChhHCC-CCCCCEEEecCCCC
Confidence            52 34444333333 55666666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.4e-16  Score=132.00  Aligned_cols=163  Identities=21%  Similarity=0.203  Sum_probs=91.2

Q ss_pred             CCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecC
Q 045321          164 FKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGS  243 (397)
Q Consensus       164 l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~  243 (397)
                      +..|+.|+++++.++.++ .+..+++|++|++++|.++.+++ ++.+++|++|++++|.++.+|. +..+++|+.|++. 
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~-  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE-  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT-
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccc-ccccccccccccc-
Confidence            345666677777666554 36667777777777777766653 5667777777777776666663 6667777777776 


Q ss_pred             CCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCC
Q 045321          244 ITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELM  323 (397)
Q Consensus       244 ~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~  323 (397)
                      ++....+ +.+..+++++.+.++++.+    .. ...+..+++|+.++++++ .+..+. .+.. +++|++|++++|.+.
T Consensus       121 ~~~~~~~-~~l~~l~~l~~l~~~~n~l----~~-~~~~~~l~~L~~l~l~~n-~l~~i~-~l~~-l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         121 HNGISDI-NGLVHLPQLESLYLGNNKI----TD-ITVLSRLTKLDTLSLEDN-QISDIV-PLAG-LTKLQNLYLSKNHIS  191 (210)
T ss_dssp             TSCCCCC-GGGGGCTTCCEEECCSSCC----CC-CGGGGGCTTCSEEECCSS-CCCCCG-GGTT-CTTCCEEECCSSCCC
T ss_pred             ccccccc-ccccccccccccccccccc----cc-cccccccccccccccccc-cccccc-cccC-CCCCCEEECCCCCCC
Confidence            6554443 3456666666666665533    11 112333444444444432 122211 1233 555555555555542


Q ss_pred             CCCccccccCcCCceEEE
Q 045321          324 QDPMPIMEKLPRLQVLKL  341 (397)
Q Consensus       324 ~~~~~~l~~l~~L~~L~L  341 (397)
                        .++.+..+++|++|+|
T Consensus       192 --~l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         192 --DLRALAGLKNLDVLEL  207 (210)
T ss_dssp             --BCGGGTTCTTCSEEEE
T ss_pred             --CChhhcCCCCCCEEEc
Confidence              2334555566666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.8e-16  Score=138.22  Aligned_cols=199  Identities=16%  Similarity=0.101  Sum_probs=160.0

Q ss_pred             CeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCc-ccccch-hhhhccccCcEEE
Q 045321          165 KYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSS-YVDHSL-EDIWMMQKLMHLN  240 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-~l~~lp-~~~~~L~~L~~L~  240 (397)
                      +.+++|+|++|.|+.+|. ++.++.+|++|+++++.+..++. .+..+..++.++...+ .+..++ ..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            468999999999998875 68999999999999999887654 4566889999988766 787875 4589999999999


Q ss_pred             ecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEe
Q 045321          241 FGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLS  318 (397)
Q Consensus       241 l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~  318 (397)
                      ++ ++....++. .++..++|+.++++++.+   ....+..+..+++|+.|+++++ +++.+.- ++.. +++|+.++++
T Consensus       112 l~-~n~~~~~~~~~~~~~~~L~~l~l~~N~l---~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~-l~~L~~l~l~  185 (284)
T d1ozna_         112 LD-RCGLQELGPGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRG-LHSLDRLLLH  185 (284)
T ss_dssp             CT-TSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTT-CTTCCEEECC
T ss_pred             cC-Ccccccccccccchhcccchhhhccccc---cccChhHhccccchhhcccccC-cccccchhhhcc-ccccchhhhh
Confidence            99 887665544 567789999999999876   3333466788899999999984 6777643 5566 8999999999


Q ss_pred             cccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          319 NTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       319 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      .|.+....+..++.+++|++|++++|.+.... +.. .+.+++|+.|++++.+
T Consensus       186 ~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~-~~~-~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEA-LAPLRALQYLRLNDNP  236 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHH-HTTCTTCCEEECCSSC
T ss_pred             hccccccChhHhhhhhhccccccccccccccc-ccc-cccccccCEEEecCCC
Confidence            99987767788999999999999877765443 222 5788999999999854

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.4e-15  Score=131.44  Aligned_cols=187  Identities=18%  Similarity=0.189  Sum_probs=97.3

Q ss_pred             CCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecC
Q 045321          164 FKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGS  243 (397)
Q Consensus       164 l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~  243 (397)
                      ++.|+.|++.+|.|+.+ +.++.+++|++|++++|.+..+++ +.++++|+++++++|.++.++. +..+++|+.++++ 
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~-l~~l~~L~~l~l~-  115 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLT-  115 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECT-
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-cccccccccccccccccccccc-ccccccccccccc-
Confidence            34455555555555555 235555566666665555555432 5555556666665554444442 4555556666555 


Q ss_pred             CCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCC
Q 045321          244 ITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELM  323 (397)
Q Consensus       244 ~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~  323 (397)
                      ++....+ ..+.....++.+.++++.+     .....+..+++|+.|++.++. +.... .++. +++|++|++++|.+.
T Consensus       116 ~~~~~~~-~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~-~~~~~-~l~~-l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         116 STQITDV-TPLAGLSNLQVLYLDLNQI-----TNISPLAGLTNLQYLSIGNAQ-VSDLT-PLAN-LSKLTTLKADDNKIS  186 (227)
T ss_dssp             TSCCCCC-GGGTTCTTCCEEECCSSCC-----CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTT-CTTCCEEECCSSCCC
T ss_pred             ccccccc-chhccccchhhhhchhhhh-----chhhhhccccccccccccccc-cccch-hhcc-cccceecccCCCccC
Confidence            4433322 2334445555555554422     111224455556666655431 11111 2344 667777777777653


Q ss_pred             CCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEec
Q 045321          324 QDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKS  369 (397)
Q Consensus       324 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~  369 (397)
                        .++.++.+++|++|+|++|....  ++ . .+.+++|+.|++++
T Consensus       187 --~l~~l~~l~~L~~L~Ls~N~lt~--i~-~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 --DISPLASLPNLIEVHLKNNQISD--VS-P-LANTSNLFIVTLTN  226 (227)
T ss_dssp             --CCGGGGGCTTCCEEECTTSCCCB--CG-G-GTTCTTCCEEEEEE
T ss_pred             --CChhhcCCCCCCEEECcCCcCCC--Cc-c-cccCCCCCEEEeeC
Confidence              23446677777777775554332  21 1 45667777777653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-15  Score=135.98  Aligned_cols=201  Identities=20%  Similarity=0.197  Sum_probs=162.7

Q ss_pred             CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCC-CCCccc-CccccCCC
Q 045321          136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNI-PSLKCL-PSLLCTIL  211 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~-~~i~~l-p~~~~~l~  211 (397)
                      .+.+++|.++++...     .+ +..|.+++.|++|+++++.+..++ ..+..+..++.+.... +.+..+ |..+++++
T Consensus        31 p~~~~~L~Ls~N~i~-----~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~  105 (284)
T d1ozna_          31 PAASQRIFLHGNRIS-----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG  105 (284)
T ss_dssp             CTTCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred             CCCCCEEECcCCcCC-----CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccc
Confidence            467899999999875     55 445599999999999999988654 4556788899988765 567776 56688999


Q ss_pred             CCcEEecCCcccccchh-hhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcE
Q 045321          212 NLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLEC  289 (397)
Q Consensus       212 ~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~  289 (397)
                      +|++|++++|.+..++. .++...+|+.++++ ++....+|+ .+..+++|+.+++++|.+   ....+..+..+++|+.
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~-~N~l~~i~~~~f~~~~~L~~L~l~~N~l---~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGNRI---SSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCE
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhc-cccccccChhHhccccchhhcccccCcc---cccchhhhccccccch
Confidence            99999999997777654 47788999999999 888877765 477899999999999876   3344567889999999


Q ss_pred             EEeecCCCeeEEE-eccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccccc
Q 045321          290 LKLVNESKLSRVV-LSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYL  347 (397)
Q Consensus       290 L~l~~~~~L~~L~-l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~  347 (397)
                      +.+.++ ++..+. -++.. +++|++|++++|.+.......++.+++|++|++++|...
T Consensus       182 l~l~~N-~l~~i~~~~f~~-l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         182 LLLHQN-RVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECCSS-CCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhhc-cccccChhHhhh-hhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            999874 444442 25677 899999999999987777788999999999999877653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.5e-15  Score=128.54  Aligned_cols=161  Identities=17%  Similarity=0.225  Sum_probs=84.3

Q ss_pred             CCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecC
Q 045321          164 FKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGS  243 (397)
Q Consensus       164 l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~  243 (397)
                      ++.+++|+++++.++.++ .++.+++|++|++++|.++.+++ ++++++|++|++++|.+..+|. ++.+++|+.|+++ 
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~-  114 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF-  114 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECC-
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-ccccccccccccc-
Confidence            345566666666665542 35566666666666666665543 5666666666666665555553 5566666666665 


Q ss_pred             CCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCC
Q 045321          244 ITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELM  323 (397)
Q Consensus       244 ~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~  323 (397)
                      ++..... +.+..+++|+.+++++|.+    ..+ ..+..+++|+.|++.++ .++.+. .++. +++|++|++++|++.
T Consensus       115 ~~~~~~~-~~~~~l~~L~~L~l~~n~l----~~~-~~l~~~~~L~~L~l~~n-~l~~l~-~l~~-l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         115 NNQITDI-DPLKNLTNLNRLELSSNTI----SDI-SALSGLTSLQQLNFSSN-QVTDLK-PLAN-LTTLERLDISSNKVS  185 (199)
T ss_dssp             SSCCCCC-GGGTTCTTCSEEECCSSCC----CCC-GGGTTCTTCSEEECCSS-CCCCCG-GGTT-CTTCCEEECCSSCCC
T ss_pred             ccccccc-cccchhhhhHHhhhhhhhh----ccc-ccccccccccccccccc-cccCCc-cccC-CCCCCEEECCCCCCC
Confidence            5544333 2355566666666655533    111 22344444444444432 222221 2334 556666666666542


Q ss_pred             CCCccccccCcCCceE
Q 045321          324 QDPMPIMEKLPRLQVL  339 (397)
Q Consensus       324 ~~~~~~l~~l~~L~~L  339 (397)
                      .  ++.++.+++|++|
T Consensus       186 ~--i~~l~~L~~L~~L  199 (199)
T d2omxa2         186 D--ISVLAKLTNLESL  199 (199)
T ss_dssp             C--CGGGGGCTTCSEE
T ss_pred             C--CccccCCCCCCcC
Confidence            2  3345555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.8e-15  Score=130.77  Aligned_cols=188  Identities=16%  Similarity=0.168  Sum_probs=87.2

Q ss_pred             cCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEE
Q 045321          185 ENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFIS  264 (397)
Q Consensus       185 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~  264 (397)
                      ..+.+|++|++.+|++++++ .+..+++|++|++++|.+..+++ +..+++|++++++ ++....++ +++.+++|+.+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~-~n~~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELS-GNPLKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECC-SCCCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccc-cccccccc-cccccccccccc
Confidence            34455555555555555552 35555555555555555554443 5555555555555 44444332 345555555555


Q ss_pred             cCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecc
Q 045321          265 ALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQN  344 (397)
Q Consensus       265 l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~  344 (397)
                      ++++..     .-...+...+.++.+.+.++. +.... .+.. +++|++|++++|.+.  ....++++++|+.|++++|
T Consensus       114 l~~~~~-----~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~-~~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         114 LTSTQI-----TDVTPLAGLSNLQVLYLDLNQ-ITNIS-PLAG-LTNLQYLSIGNAQVS--DLTPLANLSKLTTLKADDN  183 (227)
T ss_dssp             CTTSCC-----CCCGGGTTCTTCCEEECCSSC-CCCCG-GGGG-CTTCCEEECCSSCCC--CCGGGTTCTTCCEEECCSS
T ss_pred             cccccc-----cccchhccccchhhhhchhhh-hchhh-hhcc-ccccccccccccccc--cchhhcccccceecccCCC
Confidence            554411     111223344445555544321 11100 1222 455555555555432  2223555555555555444


Q ss_pred             cccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccc
Q 045321          345 SYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVN  392 (397)
Q Consensus       345 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~  392 (397)
                      ...+.  + . ...+++|+.|++++| .+++++ ..+.+++|+.|+++
T Consensus       184 ~l~~l--~-~-l~~l~~L~~L~Ls~N-~lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         184 KISDI--S-P-LASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCCC--G-G-GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEE
T ss_pred             ccCCC--h-h-hcCCCCCCEEECcCC-cCCCCc-ccccCCCCCEEEee
Confidence            33221  1 1 344555555555554 344443 13345555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=4.8e-15  Score=126.43  Aligned_cols=165  Identities=21%  Similarity=0.184  Sum_probs=107.8

Q ss_pred             CCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcE
Q 045321          136 GMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQT  215 (397)
Q Consensus       136 ~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~  215 (397)
                      +.+++.|.+.++...     .+..+ ..+++|++|++++|.++.++ .++.+++|++|++++|.++.+| .++.+++|+.
T Consensus        45 L~~L~~L~l~~~~i~-----~l~~l-~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIK-----SVQGI-QYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCE
T ss_pred             hcCccEEECcCCCCC-----CchhH-hhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-cccccccccc
Confidence            445666666666553     33444 66777777777777777665 3567777777777777777775 4677777777


Q ss_pred             EecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC
Q 045321          216 LEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE  295 (397)
Q Consensus       216 L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~  295 (397)
                      |++.+|.+..++. +..+++++.++++ .+..... ..++.+++|+.+.+++|.+    ..++ .+..+++|+.|+++++
T Consensus       117 L~l~~~~~~~~~~-l~~l~~l~~l~~~-~n~l~~~-~~~~~l~~L~~l~l~~n~l----~~i~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         117 LSLEHNGISDING-LVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQI----SDIV-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             EECTTSCCCCCGG-GGGCTTCCEEECC-SSCCCCC-GGGGGCTTCSEEECCSSCC----CCCG-GGTTCTTCCEEECCSS
T ss_pred             ccccccccccccc-ccccccccccccc-ccccccc-ccccccccccccccccccc----cccc-cccCCCCCCEEECCCC
Confidence            7777776555543 6667777777776 6554433 3566677777777777654    2222 3667777777777764


Q ss_pred             CCeeEEEeccCCCCCCceEEEEec
Q 045321          296 SKLSRVVLSKYQFPLSLSHLSLSN  319 (397)
Q Consensus       296 ~~L~~L~l~~~~~l~~L~~L~L~~  319 (397)
                       .++.++ .+.. +++|++|+|++
T Consensus       189 -~i~~l~-~l~~-l~~L~~L~Ls~  209 (210)
T d1h6ta2         189 -HISDLR-ALAG-LKNLDVLELFS  209 (210)
T ss_dssp             -CCCBCG-GGTT-CTTCSEEEEEE
T ss_pred             -CCCCCh-hhcC-CCCCCEEEccC
Confidence             455443 3555 77777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=7.7e-15  Score=124.06  Aligned_cols=162  Identities=17%  Similarity=0.174  Sum_probs=104.2

Q ss_pred             CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCc
Q 045321          135 SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQ  214 (397)
Q Consensus       135 ~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~  214 (397)
                      .++++++|.+.++...     .++.+ ..+++|++|++++|.++.+++ ++++++|++|++++|.+..+|. ++++++|+
T Consensus        38 ~l~~l~~L~l~~~~i~-----~l~~l-~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-----SIDGV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred             HhcCCCEEECCCCCCC-----Ccccc-ccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-cccccccc
Confidence            3456677777666554     33444 667777777777777776654 6777777777777777766653 67777777


Q ss_pred             EEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeec
Q 045321          215 TLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVN  294 (397)
Q Consensus       215 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~  294 (397)
                      +|++++|....++ .+..+++|+.|+++ ++....++ .+..+++|+.+++.+|++    ..+ ..++.+++|+.|++++
T Consensus       110 ~L~l~~~~~~~~~-~~~~l~~L~~L~l~-~n~l~~~~-~l~~~~~L~~L~l~~n~l----~~l-~~l~~l~~L~~L~ls~  181 (199)
T d2omxa2         110 GLTLFNNQITDID-PLKNLTNLNRLELS-SNTISDIS-ALSGLTSLQQLNFSSNQV----TDL-KPLANLTTLERLDISS  181 (199)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEECC-SSCCCCCG-GGTTCTTCSEEECCSSCC----CCC-GGGTTCTTCCEEECCS
T ss_pred             ccccccccccccc-ccchhhhhHHhhhh-hhhhcccc-cccccccccccccccccc----cCC-ccccCCCCCCEEECCC
Confidence            7777777555543 36667777777777 66555443 567777777777777654    222 2366777777777776


Q ss_pred             CCCeeEEEeccCCCCCCceEE
Q 045321          295 ESKLSRVVLSKYQFPLSLSHL  315 (397)
Q Consensus       295 ~~~L~~L~l~~~~~l~~L~~L  315 (397)
                      + .++.++ .++. +++|++|
T Consensus       182 N-~i~~i~-~l~~-L~~L~~L  199 (199)
T d2omxa2         182 N-KVSDIS-VLAK-LTNLESL  199 (199)
T ss_dssp             S-CCCCCG-GGGG-CTTCSEE
T ss_pred             C-CCCCCc-cccC-CCCCCcC
Confidence            4 344432 2344 5566554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=9e-14  Score=127.39  Aligned_cols=98  Identities=15%  Similarity=0.022  Sum_probs=76.1

Q ss_pred             CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321          137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL  216 (397)
Q Consensus       137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L  216 (397)
                      .+++.|.++++...     .+++   ..++|++|++++|.|+++|+.+   .+|+.|++++++++.++. +  .+.|++|
T Consensus        38 ~~l~~LdLs~~~L~-----~lp~---~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~-l--p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLS-----SLPE---LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-L--PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCS-----CCCS---CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-C--CTTCCEE
T ss_pred             cCCCEEEeCCCCCC-----CCCC---CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhh-h--ccccccc
Confidence            46888998888764     3443   3467999999999999998764   478888999888877763 2  2469999


Q ss_pred             ecCCcccccchhhhhccccCcEEEecCCCCCCCC
Q 045321          217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPP  250 (397)
Q Consensus       217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~  250 (397)
                      ++++|.+..+|. ++.+++|++|++. ++.....
T Consensus       104 ~L~~n~l~~lp~-~~~l~~L~~L~l~-~~~~~~~  135 (353)
T d1jl5a_         104 GVSNNQLEKLPE-LQNSSFLKIIDVD-NNSLKKL  135 (353)
T ss_dssp             ECCSSCCSSCCC-CTTCTTCCEEECC-SSCCSCC
T ss_pred             cccccccccccc-hhhhccceeeccc-ccccccc
Confidence            999999999986 6889999999998 7654433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.3e-14  Score=111.09  Aligned_cols=100  Identities=22%  Similarity=0.285  Sum_probs=84.7

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLP  247 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~  247 (397)
                      |+|++++|.++.++ .++++.+|++|++++|.++++|+.++.+++|++|++++|.+..+|. ++.+++|++|+++ ++..
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~-~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLC-NNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC-SSCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECC-CCcc
Confidence            68899999998776 4888999999999999999998888999999999999998888874 8889999999998 8776


Q ss_pred             CCCC--ccccCCCCCcEEEcCCCee
Q 045321          248 APPK--NYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       248 ~~~p--~~i~~l~~L~~l~l~~~~L  270 (397)
                      ..+|  ..++.+++|+.+++++|.+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcC
Confidence            6665  3577888899999888744

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-15  Score=134.11  Aligned_cols=199  Identities=18%  Similarity=0.146  Sum_probs=134.2

Q ss_pred             eEEEEcCCCCcccccccccCCCCCceEecCCCCCc--ccCccccCCCCCcEEecCCcccc-cchhhhhccccCcEEEecC
Q 045321          167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLK--CLPSLLCTILNLQTLEMPSSYVD-HSLEDIWMMQKLMHLNFGS  243 (397)
Q Consensus       167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~  243 (397)
                      ...+.+....+............|++|+++++.+.  .++.-+..+++|++|++++|.+. ..+..++++++|++|+++ 
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls-  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS-  103 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT-
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc-
Confidence            45666666655433344456678999999998765  35566788999999999999654 456678889999999999 


Q ss_pred             CCCCCC---CCccccCCCCCcEEEcCCC-eeeEEeccHHhhhcC-CCCCcEEEeecCC-CeeEEEe--ccCCCCCCceEE
Q 045321          244 ITLPAP---PKNYSSSLKNLIFISALNP-NLSCYHSGVSNSLLG-LHKLECLKLVNES-KLSRVVL--SKYQFPLSLSHL  315 (397)
Q Consensus       244 ~~~~~~---~p~~i~~l~~L~~l~l~~~-~L~i~~~~~~~~l~~-l~~L~~L~l~~~~-~L~~L~l--~~~~~l~~L~~L  315 (397)
                      +|....   +..-...+++|+.+++++| .+.  .+.+...+.. .++|+.|+++++. ++..-.+  .... +++|++|
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~-~~~L~~L  180 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFT--EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHL  180 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC--HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSEE
T ss_pred             ccccccccccchhhHHHHhccccccccccccc--cccchhhhcccccccchhhhcccccccccccccccccc-ccccccc
Confidence            874321   2222456889999999886 220  1223333433 4789999998752 2221111  1234 7899999


Q ss_pred             EEeccc-CCCCCccccccCcCCceEEEeccc-ccCceeEEeCCCCCCCCCEEEEecCC
Q 045321          316 SLSNTE-LMQDPMPIMEKLPRLQVLKLKQNS-YLGRKLACVGSSSFPKLTVLHLKSMY  371 (397)
Q Consensus       316 ~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~  371 (397)
                      ++++|. +++..+..++++++|++|+|+++. ..+..+ .. ...+|+|+.|++.+|-
T Consensus       181 ~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l-~~-L~~~~~L~~L~l~~~~  236 (284)
T d2astb2         181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LE-LGEIPTLKTLQVFGIV  236 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GG-GGGCTTCCEEECTTSS
T ss_pred             ccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH-HH-HhcCCCCCEEeeeCCC
Confidence            999875 555667788889999999996643 322222 22 4668999999998873

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-15  Score=135.41  Aligned_cols=182  Identities=19%  Similarity=0.144  Sum_probs=89.4

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCCCCceEecCCC-CCc--ccCccccC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLILLKHLKLNIP-SLK--CLPSLLCT  209 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~-~i~--~lp~~~~~  209 (397)
                      ....+|++|.+.++....   ..+..++..+++|++|+++++.+. ..+..++.+++|++|+++++ .++  .+..-...
T Consensus        43 ~~~~~L~~LdLs~~~i~~---~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CCCBCCCEEECTTCEECH---HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             ccCCCCCEEECCCCccCH---HHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHH
Confidence            344456666665554321   122444566666666666666554 33445555666666666653 343  12222334


Q ss_pred             CCCCcEEecCCc-cccc--chhhhhcc-ccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCC
Q 045321          210 ILNLQTLEMPSS-YVDH--SLEDIWMM-QKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLH  285 (397)
Q Consensus       210 l~~L~~L~l~~~-~l~~--lp~~~~~L-~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~  285 (397)
                      +++|++|++++| .+..  ++..+... ++|+.|+++ +|..                       .+....+......++
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~-----------------------~i~~~~l~~l~~~~~  175 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS-GYRK-----------------------NLQKSDLSTLVRRCP  175 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC-SCGG-----------------------GSCHHHHHHHHHHCT
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhc-cccc-----------------------ccccccccccccccc
Confidence            556666666655 3322  22223332 355555555 4311                       010122333334455


Q ss_pred             CCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEeccc-CCCCCccccccCcCCceEEEec
Q 045321          286 KLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTE-LMQDPMPIMEKLPRLQVLKLKQ  343 (397)
Q Consensus       286 ~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~  343 (397)
                      +|++|++++|+.+..-.+ .+.. +++|++|++++|. +.+..+..++++|+|+.|++++
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~-~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             cccccccccccCCCchhhhhhcc-cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            566666655544432111 2334 6667777776653 4444455566777777777743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8e-14  Score=113.41  Aligned_cols=128  Identities=13%  Similarity=0.020  Sum_probs=86.2

Q ss_pred             cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEE
Q 045321          162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLN  240 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~  240 (397)
                      .++..+|+|+|++|.|+.+|.....+.+|++|++++|.|++++ .+..+++|++|++++|.+..+|.. +..+++|++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            5666778888888888777766667778888888888887774 477788888888888877777765 45677888888


Q ss_pred             ecCCCCCCCCCc--cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEE
Q 045321          241 FGSITLPAPPKN--YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLK  291 (397)
Q Consensus       241 l~~~~~~~~~p~--~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~  291 (397)
                      ++ ++....+++  .+..+++|+.+++++|.+.-....-...+..+++|+.|+
T Consensus        94 L~-~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ec-cccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            87 776665553  466777777777777643100000112345555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.4e-13  Score=116.52  Aligned_cols=177  Identities=14%  Similarity=0.122  Sum_probs=93.9

Q ss_pred             CeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcc-cC-ccccCCCCCcEEecCCc-ccccchh-hhhccccCcEE
Q 045321          165 KYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKC-LP-SLLCTILNLQTLEMPSS-YVDHSLE-DIWMMQKLMHL  239 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~-lp-~~~~~l~~L~~L~l~~~-~l~~lp~-~~~~L~~L~~L  239 (397)
                      +.+++|++++|.|+.+|. .+.++++|++|++++|.+.. +| ..+..+++++++.+..+ .+..++. .+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            356677777777776654 45667777777777776543 32 34566777777776554 5555443 36667777777


Q ss_pred             EecCCCCCCCCCc--cccCCCCCcEEEcCCCeeeEEeccHHhhhcCC-CCCcEEEeecCCCeeEEEeccCCCCCCceEEE
Q 045321          240 NFGSITLPAPPKN--YSSSLKNLIFISALNPNLSCYHSGVSNSLLGL-HKLECLKLVNESKLSRVVLSKYQFPLSLSHLS  316 (397)
Q Consensus       240 ~l~~~~~~~~~p~--~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l-~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~  316 (397)
                      ++. ++.....+.  ....++.+..+...++.+   ...-...+..+ ..++.|++.+ ..++.+.-.... .+++..+.
T Consensus       109 ~l~-~~~l~~~~~~~~~~~l~~l~~~~~~n~~l---~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~-~~~l~~~~  182 (242)
T d1xwdc1         109 LIS-NTGIKHLPDVHKIHSLQKVLLDIQDNINI---HTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFN-GTQLDELN  182 (242)
T ss_dssp             EEE-SCCCCSCCCCTTTCBSSCEEEEEESCTTC---CEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTT-TCCEEEEE
T ss_pred             ccc-hhhhccccccccccccccccccccccccc---ccccccccccccccceeeeccc-cccccccccccc-chhhhccc
Confidence            777 655444332  222334443333333322   01111222222 2455566554 445544322222 34444443


Q ss_pred             -EecccCCCCCccccccCcCCceEEEeccccc
Q 045321          317 -LSNTELMQDPMPIMEKLPRLQVLKLKQNSYL  347 (397)
Q Consensus       317 -L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~  347 (397)
                       +.+|.+...+...+.++++|++|+|++|.+.
T Consensus       183 ~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         183 LSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence             3445554444445677777777777665543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.2e-13  Score=117.41  Aligned_cols=219  Identities=13%  Similarity=0.081  Sum_probs=147.9

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCccccc-chh-hhhccccCcEEEecCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDH-SLE-DIWMMQKLMHLNFGSI  244 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~-lp~-~~~~L~~L~~L~l~~~  244 (397)
                      ++++.++..++.+|+.+.  .++++|++++|.++.+|. .+.++++|++|++++|.+.. +|. .+..+++++++.+. .
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~-~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE-K   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE-C
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc-c
Confidence            678888888999997664  589999999999999987 47899999999999995544 444 47889999999987 5


Q ss_pred             C-CCCCCC-ccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee--cCCCeeEEEe-ccCCCCCCceEEEEec
Q 045321          245 T-LPAPPK-NYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV--NESKLSRVVL-SKYQFPLSLSHLSLSN  319 (397)
Q Consensus       245 ~-~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~--~~~~L~~L~l-~~~~~l~~L~~L~L~~  319 (397)
                      + .....+ ..+..+++|+.+.+.++.+    ... .....+..++.+...  ++..+..+.. .+......++.|++++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l----~~~-~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGI----KHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCC----CSC-CCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             cccccccccccccccccccccccchhhh----ccc-ccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            4 444444 5578999999999988754    111 122334444444322  2355666543 3333135789999999


Q ss_pred             ccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEEC-CCccccccccccccccCC
Q 045321          320 TELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMG-AGAMPKLESLIVNPCAYL  397 (397)
Q Consensus       320 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~p~L~~L~i~~C~~L  397 (397)
                      +.+.. ........++++.+....++. ...++.....++++|+.|++++++ ++.++.. ...+++|+.+++.++.+|
T Consensus       163 n~l~~-i~~~~~~~~~l~~~~~l~~n~-l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l~~l  238 (242)
T d1xwdc1         163 NGIQE-IHNCAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKL  238 (242)
T ss_dssp             SCCCE-ECTTTTTTCCEEEEECTTCTT-CCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESSSCS
T ss_pred             ccccc-cccccccchhhhccccccccc-cccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCCCcC
Confidence            88743 333344556666665423322 223333325788999999999864 7777542 456777888777766554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.3e-13  Score=110.62  Aligned_cols=125  Identities=11%  Similarity=0.053  Sum_probs=106.1

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccc-cCCCC
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLL-CTILN  212 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~  212 (397)
                      ..+.++|.|.+.++...     .++.++..+++|++|++++|.|+.++ .+..+++|++|++++|.+..+|+.+ ..+++
T Consensus        15 ~n~~~lr~L~L~~n~I~-----~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             cCcCcCcEEECCCCCCC-----ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccc
Confidence            56778999999999876     45555578899999999999999884 5889999999999999999998765 57999


Q ss_pred             CcEEecCCcccccchh--hhhccccCcEEEecCCCCCCCCCc----cccCCCCCcEEEc
Q 045321          213 LQTLEMPSSYVDHSLE--DIWMMQKLMHLNFGSITLPAPPKN----YSSSLKNLIFISA  265 (397)
Q Consensus       213 L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~l~l  265 (397)
                      |++|++++|.+..++.  .+..+++|++|++. +|.....|.    .++.+++|+.++-
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~-~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCIL-RNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECC-SSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccceeccccccccccccccccccccchhhcC-CCccccccchHHHHHHHCCCcCeeCC
Confidence            9999999998888875  58889999999999 887777764    4778899988753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=5.3e-13  Score=103.25  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             eEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecC
Q 045321          140 QSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMP  219 (397)
Q Consensus       140 r~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~  219 (397)
                      |+|.+.++...     .++.+ ..++.|++|++++|.++.+|+.++.+++|++|++++|.++.+| +++.+++|++|+++
T Consensus         1 R~L~Ls~n~l~-----~l~~l-~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-----VLCHL-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-----SCCCG-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-----CCccc-ccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECC
Confidence            56778888775     44555 8889999999999999999999999999999999999999997 49999999999999


Q ss_pred             Ccccccchh--hhhccccCcEEEecCCCCCCCC
Q 045321          220 SSYVDHSLE--DIWMMQKLMHLNFGSITLPAPP  250 (397)
Q Consensus       220 ~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~  250 (397)
                      +|.+..+|.  .++.+++|++|+++ ++.....
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~-~N~i~~~  105 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQ-GNSLCQE  105 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECT-TSGGGGS
T ss_pred             CCccCCCCCchhhcCCCCCCEEECC-CCcCCcC
Confidence            998888764  58899999999999 7654433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.30  E-value=2.5e-11  Score=110.69  Aligned_cols=241  Identities=18%  Similarity=0.100  Sum_probs=140.0

Q ss_pred             CeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEec
Q 045321          116 NVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKL  195 (397)
Q Consensus       116 ~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l  195 (397)
                      ++++|.+..+.... .+ ...++|++|.++++...     .+++   .+.+|+.|+++++.++.++.-   ...|++|++
T Consensus        39 ~l~~LdLs~~~L~~-lp-~~~~~L~~L~Ls~N~l~-----~lp~---~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LP-ELPPHLESLVASCNSLT-----ELPE---LPQSLKSLLVDNNNLKALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSC-CC-SCCTTCSEEECCSSCCS-----SCCC---CCTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCC-CC-CCCCCCCEEECCCCCCc-----cccc---chhhhhhhhhhhcccchhhhh---ccccccccc
Confidence            45666666333222 22 34578999999988765     3433   346789999999998866532   246999999


Q ss_pred             CCCCCcccCccccCCCCCcEEecCCcccccchhhh-------------------hccccCcEEEecCCCCCCCCC-----
Q 045321          196 NIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDI-------------------WMMQKLMHLNFGSITLPAPPK-----  251 (397)
Q Consensus       196 ~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~-------------------~~L~~L~~L~l~~~~~~~~~p-----  251 (397)
                      ++|.+..+|. ++.+++|++|+++++.+...|...                   +.++.++.+++. .+.....+     
T Consensus       106 ~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~-~n~~~~~~~~~~~  183 (353)
T d1jl5a_         106 SNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD-NNSLKKLPDLPLS  183 (353)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC-SSCCSSCCCCCTT
T ss_pred             cccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccc-ccccccccccccc
Confidence            9999999985 689999999999998666555432                   223334444443 22111111     


Q ss_pred             --------------ccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC---------CCeeEEEe-----
Q 045321          252 --------------NYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE---------SKLSRVVL-----  303 (397)
Q Consensus       252 --------------~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~---------~~L~~L~l-----  303 (397)
                                    +....++.|+.+.++++..    ...+.   ...++..+.+...         +.+.....     
T Consensus       184 ~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~----~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         184 LESIVAGNNILEELPELQNLPFLTTIYADNNLL----KTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF  256 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC----SSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccccccc----ccccc---ccccccccccccccccccccccccccccccccccc
Confidence                          1123344444444443311    00000   0111111111110         01111111     


Q ss_pred             ---------------------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCC
Q 045321          304 ---------------------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKL  362 (397)
Q Consensus       304 ---------------------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L  362 (397)
                                           .+...+++|++|++++|.+.. .+   ..+++|+.|+|++|....  ++    ...++|
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp---~~~~~L~~L~L~~N~L~~--l~----~~~~~L  326 (353)
T d1jl5a_         257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LP---ALPPRLERLIASFNHLAE--VP----ELPQNL  326 (353)
T ss_dssp             SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC--CC----CCCTTC
T ss_pred             cccccccchhcccccccCccccccccCCCCCEEECCCCccCc-cc---cccCCCCEEECCCCcCCc--cc----cccCCC
Confidence                                 111226899999999998753 22   247899999997776542  22    345689


Q ss_pred             CEEEEecCCCcCcEEECCCccccccccccc
Q 045321          363 TVLHLKSMYWQDEWTMGAGAMPKLESLIVN  392 (397)
Q Consensus       363 ~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~  392 (397)
                      ++|++++++ ++++|...   ++|+.|.+.
T Consensus       327 ~~L~L~~N~-L~~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         327 KQLHVEYNP-LREFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             CEEECCSSC-CSSCCCCC---TTCCEEECC
T ss_pred             CEEECcCCc-CCCCCccc---cccCeeECc
Confidence            999999986 88886433   456666653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.23  E-value=2e-11  Score=101.98  Aligned_cols=100  Identities=15%  Similarity=0.104  Sum_probs=64.1

Q ss_pred             EEEEcCCCCcccccccccCCCCCceEecCCCCCcc-c-CccccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCC
Q 045321          168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKC-L-PSLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSI  244 (397)
Q Consensus       168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~-l-p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~  244 (397)
                      ++++.+++.++.+|+.+.  .++++|++++|.|.. + +..+..+++|++|+++++.+..++. .+..+++|++|+++ +
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls-~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-E   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-S
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec-c
Confidence            456677777777776553  567777777777753 3 2345667777777777776655543 36667777777777 6


Q ss_pred             CCCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321          245 TLPAPPKNY-SSSLKNLIFISALNPNL  270 (397)
Q Consensus       245 ~~~~~~p~~-i~~l~~L~~l~l~~~~L  270 (397)
                      +.+..+|+. ++++++|+++++++|.+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccc
Confidence            666665543 56666677666666644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=2.2e-13  Score=114.64  Aligned_cols=105  Identities=15%  Similarity=0.068  Sum_probs=77.4

Q ss_pred             hcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEE
Q 045321          161 CEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLN  240 (397)
Q Consensus       161 ~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~  240 (397)
                      +..+++|+.|++++|.|+.++ .++++++|++|++++|.++.+|.....+++|++|++++|.+..++. +..+++|++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~  121 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH-HHHHHHSSEEE
T ss_pred             HhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            377788888888888877774 4777888888888888887777655666678888888887777653 77788888888


Q ss_pred             ecCCCCCCCCC--ccccCCCCCcEEEcCCC
Q 045321          241 FGSITLPAPPK--NYSSSLKNLIFISALNP  268 (397)
Q Consensus       241 l~~~~~~~~~p--~~i~~l~~L~~l~l~~~  268 (397)
                      ++ ++....++  ..++.+++|+.+++++|
T Consensus       122 L~-~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         122 MS-NNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             ES-EEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cc-cchhccccccccccCCCccceeecCCC
Confidence            87 76655554  24667777777777766

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=2.3e-12  Score=108.24  Aligned_cols=121  Identities=21%  Similarity=0.179  Sum_probs=90.7

Q ss_pred             eEEEEcCCC--CcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCC
Q 045321          167 LRLLNLGYA--VLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSI  244 (397)
Q Consensus       167 Lr~L~l~~~--~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~  244 (397)
                      ++.+++.+.  .++.+|.+++.+.+|++|++++|.|+.++ .+..+++|++|++++|.+..+|.....+++|++|+++ +
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~-~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS-Y  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS-E
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccc-c
Confidence            445566554  36678888999999999999999998886 5889999999999999888888766667789999998 7


Q ss_pred             CCCCCCCccccCCCCCcEEEcCCCeeeEEeccHH--hhhcCCCCCcEEEeec
Q 045321          245 TLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVS--NSLLGLHKLECLKLVN  294 (397)
Q Consensus       245 ~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~--~~l~~l~~L~~L~l~~  294 (397)
                      +....++ .+..+++|+.+++++|.+    ..++  ..+..+++|+.|++++
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~i----~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNKI----TNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEEC----CCHHHHHHHTTTTTCSEEEECS
T ss_pred             ccccccc-cccccccccccccccchh----ccccccccccCCCccceeecCC
Confidence            7766653 577888888888888755    3332  3455555555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=1.4e-10  Score=96.73  Aligned_cols=105  Identities=14%  Similarity=0.027  Sum_probs=70.9

Q ss_pred             CeeEEEEcCCCCccc-c-cccccCCCCCceEecCCCCCcccC-ccccCCCCCcEEecCCcccccchhh-hhccccCcEEE
Q 045321          165 KYLRLLNLGYAVLDQ-F-PLGLENLILLKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLN  240 (397)
Q Consensus       165 ~~Lr~L~l~~~~i~~-l-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~  240 (397)
                      +.+++|+|++|.|+. + +..++++.+|+.|++++|.+..++ ..+..+++|++|++++|.+..+|+. +.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            456777777777753 3 344567777777777777766543 4566677777777777777777654 67777777777


Q ss_pred             ecCCCCCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321          241 FGSITLPAPPKNY-SSSLKNLIFISALNPNL  270 (397)
Q Consensus       241 l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L  270 (397)
                      ++ ++.+..+|++ +..+++|++++++++.+
T Consensus       109 L~-~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         109 LY-DNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CC-SSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cC-CccccccCHHHhcCCccccccccccccc
Confidence            77 7666666544 56677777777776643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.6e-11  Score=116.12  Aligned_cols=110  Identities=19%  Similarity=0.081  Sum_probs=76.7

Q ss_pred             CeEEEEEEeCccchh-hcc--CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-----ccccccc-C
Q 045321          116 NVKRCFILEDLIEFI-FLE--QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-----QFPLGLE-N  186 (397)
Q Consensus       116 ~~r~L~l~~~~~~~~-~~~--~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-----~lp~~~~-~  186 (397)
                      +++.|.+..+...+. +..  ..++++++|.+.++.........+...+..++.|++|++++|.|+     .+...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            567788874444432 223  778899999999997653223344444488899999999999875     2233332 2


Q ss_pred             CCCCceEecCCCCCcc-----cCccccCCCCCcEEecCCccccc
Q 045321          187 LILLKHLKLNIPSLKC-----LPSLLCTILNLQTLEMPSSYVDH  225 (397)
Q Consensus       187 l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~~  225 (397)
                      ..+|++|++++|.++.     ++..+..+++|++|++++|.+..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            3479999999998853     55667888999999999885543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.9e-09  Score=85.18  Aligned_cols=104  Identities=14%  Similarity=-0.037  Sum_probs=80.5

Q ss_pred             eeEEEEcCCCCcccccccccCCCCCceEecCCC-CCcccCc-cccCCCCCcEEecCCcccccchh-hhhccccCcEEEec
Q 045321          166 YLRLLNLGYAVLDQFPLGLENLILLKHLKLNIP-SLKCLPS-LLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFG  242 (397)
Q Consensus       166 ~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~  242 (397)
                      ...+++.+++.+.+.|..+..+++|++|+++++ .++.++. .+.++++|++|++++|+++.+++ .+..+++|++|+++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345577777777777888888888888888765 4887764 47788888888888888888854 47888888888888


Q ss_pred             CCCCCCCCCccccCCCCCcEEEcCCCee
Q 045321          243 SITLPAPPKNYSSSLKNLIFISALNPNL  270 (397)
Q Consensus       243 ~~~~~~~~p~~i~~l~~L~~l~l~~~~L  270 (397)
                       ++.+..+|.++....+|+.+++++|.+
T Consensus        89 -~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 -FNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             -SSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             -CCCCcccChhhhccccccccccCCCcc
Confidence             888888887766666788888887643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.83  E-value=3.3e-10  Score=103.30  Aligned_cols=235  Identities=14%  Similarity=0.029  Sum_probs=104.0

Q ss_pred             CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-----------cccccccCCCCCceEecCCCCCcc
Q 045321          134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-----------QFPLGLENLILLKHLKLNIPSLKC  202 (397)
Q Consensus       134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-----------~lp~~~~~l~~L~~L~l~~~~i~~  202 (397)
                      .....++.|.+.++.........+...+...+.|+.|+++++...           .+.+.+...++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            345555566655554322111122222245556666666554322           112233445556666666555432


Q ss_pred             -----cCccccCCCCCcEEecCCccccc-----chhh---------hhccccCcEEEecCCCCCC-----CCCccccCCC
Q 045321          203 -----LPSLLCTILNLQTLEMPSSYVDH-----SLED---------IWMMQKLMHLNFGSITLPA-----PPKNYSSSLK  258 (397)
Q Consensus       203 -----lp~~~~~l~~L~~L~l~~~~l~~-----lp~~---------~~~L~~L~~L~l~~~~~~~-----~~p~~i~~l~  258 (397)
                           +...+...++|++|++++|.+..     +...         ....+.|+.+.++ ++...     .+...+...+
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~-~n~i~~~~~~~l~~~l~~~~  186 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-RNRLENGSMKEWAKTFQSHR  186 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC-SSCCTGGGHHHHHHHHHHCT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc-cccccccccccccchhhhhh
Confidence                 33334455566666666553221     0000         1223455666655 43211     1112234455


Q ss_pred             CCcEEEcCCCeeeEE--eccHHhhhcCCCCCcEEEeecCCC----eeEEEeccCCCCCCceEEEEecccCCCCCccccc-
Q 045321          259 NLIFISALNPNLSCY--HSGVSNSLLGLHKLECLKLVNESK----LSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIME-  331 (397)
Q Consensus       259 ~L~~l~l~~~~L~i~--~~~~~~~l~~l~~L~~L~l~~~~~----L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~-  331 (397)
                      .|+.++++.|.+.-.  ...+...+...++|+.|++++++-    .+.+.-.+.. .++|++|++++|.+.......+. 
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~-~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc-cccchhhhhhcCccCchhhHHHHH
Confidence            666666665533100  011223345556666666665320    0001002333 56666666666665433332221 


Q ss_pred             -----cCcCCceEEEecccccCceeEEe--CC-CCCCCCCEEEEecC
Q 045321          332 -----KLPRLQVLKLKQNSYLGRKLACV--GS-SSFPKLTVLHLKSM  370 (397)
Q Consensus       332 -----~l~~L~~L~L~~~~~~~~~~~~~--~~-~~~~~L~~L~l~~~  370 (397)
                           ..++|++|++++|....+.+..-  .. ...++|+.|+++++
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence                 13456677776555433211100  01 13556777776653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.82  E-value=4.1e-10  Score=102.69  Aligned_cols=232  Identities=15%  Similarity=0.049  Sum_probs=154.3

Q ss_pred             hHHhcCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCcc-----------cCccccCCCCCcEEecCCc
Q 045321          158 ENFCEKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLKC-----------LPSLLCTILNLQTLEMPSS  221 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~~-----------lp~~~~~l~~L~~L~l~~~  221 (397)
                      ..+ .....+++|++++|.+.     .+-..+...++|+.++++++....           +...+...++|++|++++|
T Consensus        25 ~~L-~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          25 AVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHH-hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            444 77899999999999875     344567788999999998765432           2234567889999999999


Q ss_pred             cccc-----chhhhhccccCcEEEecCCCCCCC-----CCc---------cccCCCCCcEEEcCCCeeeEE-eccHHhhh
Q 045321          222 YVDH-----SLEDIWMMQKLMHLNFGSITLPAP-----PKN---------YSSSLKNLIFISALNPNLSCY-HSGVSNSL  281 (397)
Q Consensus       222 ~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~-----~p~---------~i~~l~~L~~l~l~~~~L~i~-~~~~~~~l  281 (397)
                      .+..     +...+...++|++|+++ +|....     +..         .......|+.+.++++.+.-. ...+...+
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~-~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECC-SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecc-cccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            5433     55567778999999999 764211     000         113456788888887754211 13455667


Q ss_pred             cCCCCCcEEEeecCCCeeE------EEeccCCCCCCceEEEEecccCCCCC----ccccccCcCCceEEEecccccCcee
Q 045321          282 LGLHKLECLKLVNESKLSR------VVLSKYQFPLSLSHLSLSNTELMQDP----MPIMEKLPRLQVLKLKQNSYLGRKL  351 (397)
Q Consensus       282 ~~l~~L~~L~l~~~~~L~~------L~l~~~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~  351 (397)
                      ...+.|+.|+++++. +..      +.-.+.. .++|++|++++|.+....    ...+..+++|++|+|++|...+...
T Consensus       183 ~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHCTTCCEEECCSSC-CCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhhhhhccccccccc-ccccccccchhhhhcc-hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence            788999999998752 211      0002344 789999999999864332    2446788999999997776544322


Q ss_pred             EEe----CCCCCCCCCEEEEecCCCcCc-----EEE-CCCccccccccccccc
Q 045321          352 ACV----GSSSFPKLTVLHLKSMYWQDE-----WTM-GAGAMPKLESLIVNPC  394 (397)
Q Consensus       352 ~~~----~~~~~~~L~~L~l~~~~~l~~-----~~~-~~~~~p~L~~L~i~~C  394 (397)
                      ...    .....+.|++|+++++. +..     +.. .....++|+.|++.++
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            111    02345789999999864 432     111 1124678999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.2e-10  Score=105.33  Aligned_cols=88  Identities=15%  Similarity=0.054  Sum_probs=52.5

Q ss_pred             CCCeEEEEEEeCccchh----hcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccc-----cc
Q 045321          114 LANVKRCFILEDLIEFI----FLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQ-----FP  181 (397)
Q Consensus       114 ~~~~r~L~l~~~~~~~~----~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~-----lp  181 (397)
                      .++++.+.+..+...+.    ...  ..+++|+.|.++++.........+ ..+......|++|++++|.++.     ++
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~  105 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  105 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence            45667777775443221    122  567788888888776542111122 1221123468888888888752     45


Q ss_pred             ccccCCCCCceEecCCCCCc
Q 045321          182 LGLENLILLKHLKLNIPSLK  201 (397)
Q Consensus       182 ~~~~~l~~L~~L~l~~~~i~  201 (397)
                      ..+..+++|++|++++|.+.
T Consensus       106 ~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         106 STLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHTTSCTTCCEEECCSSBCH
T ss_pred             chhhccccccccccccccch
Confidence            56677888888888877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.7e-08  Score=80.61  Aligned_cols=81  Identities=15%  Similarity=0.095  Sum_probs=50.2

Q ss_pred             cCCCeeEEEEcCCCC-ccccc-ccccCCCCCceEecCCCCCcccC-ccccCCCCCcEEecCCcccccchhhhhccccCcE
Q 045321          162 EKFKYLRLLNLGYAV-LDQFP-LGLENLILLKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMH  238 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~  238 (397)
                      ..++.|++|+++++. ++.++ ..+.++.+|+.|++++|+|+.++ ..+..+++|++|++++|.++.+|.++....+|++
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~  107 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE  107 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccc
Confidence            555666666665543 66554 34566666666666666666663 3356666666666666666666665444446666


Q ss_pred             EEec
Q 045321          239 LNFG  242 (397)
Q Consensus       239 L~l~  242 (397)
                      |+++
T Consensus       108 L~L~  111 (156)
T d2ifga3         108 LVLS  111 (156)
T ss_dssp             EECC
T ss_pred             cccC
Confidence            6666

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.8e-07  Score=71.88  Aligned_cols=85  Identities=21%  Similarity=0.084  Sum_probs=63.1

Q ss_pred             hHHhcCCCeeEEEEcCCCCcccc---cccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccch------
Q 045321          158 ENFCEKFKYLRLLNLGYAVLDQF---PLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSL------  227 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp------  227 (397)
                      ..++..++.|++|++++|.|+.+   +..+..+++|++|++++|.|+.+++ ......+|+.|++++|.+....      
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            44556789999999999998855   3456788999999999999988765 2234457899999998554332      


Q ss_pred             --hhhhccccCcEEEec
Q 045321          228 --EDIWMMQKLMHLNFG  242 (397)
Q Consensus       228 --~~~~~L~~L~~L~l~  242 (397)
                        ..+..+++|+.||-.
T Consensus       138 ~~~i~~~~P~L~~LDg~  154 (162)
T d1koha1         138 ISAIRERFPKLLRLDGH  154 (162)
T ss_dssp             HHHHHTTSTTCCEETTE
T ss_pred             HHHHHHHCCCCCEECcC
Confidence              235678899988644

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.1e-06  Score=70.16  Aligned_cols=63  Identities=24%  Similarity=0.099  Sum_probs=43.0

Q ss_pred             ccCCCCCceEecCCCCCcccC---ccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCC
Q 045321          184 LENLILLKHLKLNIPSLKCLP---SLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLP  247 (397)
Q Consensus       184 ~~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~  247 (397)
                      ..++++|++|++++|+|+.++   ..+..+++|+.|++++|.+..++.. ..+..+|+.|++. ++..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~-~Npl  127 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD-GNSL  127 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCT-TSTT
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecC-CCCc
Confidence            346778888888888877553   3456778888888888877777652 2334467777777 6544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.36  E-value=0.00013  Score=57.90  Aligned_cols=60  Identities=12%  Similarity=0.033  Sum_probs=26.5

Q ss_pred             cCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCcc-----cCccccCCCCCcEEecCCc
Q 045321          162 EKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLKC-----LPSLLCTILNLQTLEMPSS  221 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~  221 (397)
                      ...+.|++|++++|.+.     .+...+...+.|+.|++++|.+..     +-..+...+.|++|+++++
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            44455555555555543     122233334445555555544431     2223334444555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.20  E-value=0.00017  Score=57.32  Aligned_cols=88  Identities=15%  Similarity=0.155  Sum_probs=63.0

Q ss_pred             hHHhcCCCeeEEEEcCCCC-cc-----cccccccCCCCCceEecCCCCCc-----ccCccccCCCCCcEEecCCccccc-
Q 045321          158 ENFCEKFKYLRLLNLGYAV-LD-----QFPLGLENLILLKHLKLNIPSLK-----CLPSLLCTILNLQTLEMPSSYVDH-  225 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~~-i~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~-  225 (397)
                      ..+..+.+.|++|+|+++. ++     .+-..+....+|++|++++|.+.     .+...+...+.|++|++++|.+.. 
T Consensus         8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_           8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            5555677889999998754 65     34456777888999999998875     234455667889999999885443 


Q ss_pred             ----chhhhhccccCcEEEecCCCC
Q 045321          226 ----SLEDIWMMQKLMHLNFGSITL  246 (397)
Q Consensus       226 ----lp~~~~~L~~L~~L~l~~~~~  246 (397)
                          +-.++..-++|++|++. ++.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~-~n~  111 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKAD-NQR  111 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECC-CCS
T ss_pred             HHHHHHHHHHhCCcCCEEECC-CCc
Confidence                33456666778888887 553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.95  E-value=0.00059  Score=53.83  Aligned_cols=39  Identities=13%  Similarity=0.080  Sum_probs=18.1

Q ss_pred             cCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCC
Q 045321          162 EKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSL  200 (397)
Q Consensus       162 ~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i  200 (397)
                      ...++|++|++++|.+.     .+-..+.....++.++++++.+
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            44555555555555543     1222333444455555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.77  E-value=0.00076  Score=53.18  Aligned_cols=85  Identities=15%  Similarity=0.144  Sum_probs=55.0

Q ss_pred             hHHhcCCCeeEEEEcCCC-Ccc-----cccccccCCCCCceEecCCCCCcc-----cCccccCCCCCcEEecCCccc---
Q 045321          158 ENFCEKFKYLRLLNLGYA-VLD-----QFPLGLENLILLKHLKLNIPSLKC-----LPSLLCTILNLQTLEMPSSYV---  223 (397)
Q Consensus       158 ~~~~~~l~~Lr~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l---  223 (397)
                      ..+..+.+.|+.|+++++ .++     .+-..+....+|+.|++++|.+..     +-..+...+.++.+++++|.+   
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            455567788888888874 354     344556677888888888887642     334455667788888777733   


Q ss_pred             --ccchhhhhccccCcEEEec
Q 045321          224 --DHSLEDIWMMQKLMHLNFG  242 (397)
Q Consensus       224 --~~lp~~~~~L~~L~~L~l~  242 (397)
                        ..+...+...++|+.+++.
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECC
T ss_pred             hHHHHHHHHHhCccccEEeec
Confidence              2233455666667766665