Citrus Sinensis ID: 045323
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 740 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.921 | 0.546 | 0.302 | 5e-63 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.897 | 0.530 | 0.299 | 6e-59 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.916 | 0.578 | 0.298 | 2e-58 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.766 | 0.496 | 0.318 | 9e-53 | |
| Q8L899 | 1207 | Systemin receptor SR160 O | N/A | no | 0.809 | 0.496 | 0.314 | 2e-52 | |
| Q8GUQ5 | 1207 | Brassinosteroid LRR recep | N/A | no | 0.809 | 0.496 | 0.313 | 2e-52 | |
| Q8LPB4 | 1021 | Phytosulfokine receptor 1 | N/A | no | 0.741 | 0.537 | 0.320 | 2e-50 | |
| Q9ZWC8 | 1166 | Serine/threonine-protein | no | no | 0.851 | 0.540 | 0.278 | 3e-50 | |
| O22476 | 1196 | Protein BRASSINOSTEROID I | no | no | 0.798 | 0.494 | 0.298 | 4e-50 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.814 | 0.577 | 0.284 | 2e-49 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 243 bits (619), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 251/830 (30%), Positives = 378/830 (45%), Gaps = 148/830 (17%)
Query: 29 CQWACVEC-NTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEY 87
C W V C NT +VI+L+L G G + F F L LDLS N
Sbjct: 58 CSWTGVTCDNTGLFRVIALNLTGLGLTGSISPW-----FGRFDNLIHLDLSSNNLVG--- 109
Query: 88 FNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSG 147
TA SN + SL+ L L ++ L G I Q L LV ++ + I N L G
Sbjct: 110 ---PIPTALSN--------LTSLESLFLFSNQLTGEIPSQ-LGSLVNIRSLRIGDNELVG 157
Query: 148 SLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHS 207
+P L NL L++L ++ +LT I S L L ++ L L +N+ + I E N S
Sbjct: 158 DIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQDNYLEGPIPAE-LGNCS 215
Query: 208 KLKFF-------DGDIYAEIET---------SHSSLTPKF--------QLTSISLFGHGD 243
L F +G I AE+ +++SLT + QL +SL +
Sbjct: 216 DLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQL 275
Query: 244 SGIFPKFLYHQHDLEYVDLSHLNLTREFPN--W----------------------LLEKN 279
G+ PK L +L+ +DLS NLT E P W + N
Sbjct: 276 QGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNN 335
Query: 280 KKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATN 339
L++L L L G P+ + ++L+ LD+SNN L G IP + E++ L L + N
Sbjct: 336 TNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELV-ELTDLYLHNN 394
Query: 340 AFNGSIPSSFGN--TWPWGCFY-----------------LEYLVLSNNSLQGQLFSKEFN 380
G++ S N W Y LE L L N G++ + N
Sbjct: 395 TLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGN 454
Query: 381 LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440
T LK +++ GNHF G+IP ++ L L++ N + G +P LGN L+ + + +N
Sbjct: 455 CTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADN 514
Query: 441 RLEGPIPSAFCQLRHLEILDLSRNNISGSLP-SCSSPFNIRRVHLSKNMLQG---PLLGD 496
+L G IPS+F L+ LE L L N++ G+LP S S N+ R++LS N L G PL G
Sbjct: 515 QLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGS 574
Query: 497 LSY-------------------------------NRLNSNIPDWMNRLPQLRYLILANNG 525
SY N+L IP + ++ +L L +++N
Sbjct: 575 SSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNA 634
Query: 526 LEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS--FNYREDNHDLFDQDPQILYQL 583
L G +PLQL KL +DL++N LSG IP L +S + ++ + P L+
Sbjct: 635 LTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNC 694
Query: 584 PQLQILYTNYHN-----HKYLTNFTT-------KQRLYTYEVQPLHSMSGL---DLSCNK 628
+L +L + ++ + + N K + Q + +S L LS N
Sbjct: 695 TKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNS 754
Query: 629 LIGEIPLQIGELSRIHT-LNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE 687
L GEIP++IG+L + + L+LS+NN TG+ P T + ++E+LDLS+N L G++P + +
Sbjct: 755 LTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGD 814
Query: 688 LNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNE 737
+ +L +V+FNNL GK QF + DS+ GN LCG PL + CN
Sbjct: 815 MKSLGYLNVSFNNLGGKLK---KQFSRWPADSFLGNTGLCGSPLSR-CNR 860
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 221/737 (29%), Positives = 360/737 (48%), Gaps = 73/737 (9%)
Query: 53 KLGDGEGYLNASL---FTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMA- 108
KLGD E LN ++ F + L++L L+ L LQ +EL
Sbjct: 150 KLGDNE--LNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGP 207
Query: 109 ---------SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYL 159
SL + + + LNG+ L L L LQ +N+ N+ SG +P L +L +
Sbjct: 208 IPAEIGNCTSLALFAAAFNRLNGS-LPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSI 266
Query: 160 RLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFF------- 212
+ L++ NQL + + L L ++ L LS+N+ I E F+ ++L+F
Sbjct: 267 QYLNLIGNQL-QGLIPKRLTELANLQTLDLSSNNLTGVIH-EEFWRMNQLEFLVLAKNRL 324
Query: 213 DGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFP 272
G + I ++++SL F L+ L SG P + + L+ +DLS+ LT + P
Sbjct: 325 SGSLPKTICSNNTSLKQLF-LSETQL-----SGEIPAEISNCQSLKLLDLSNNTLTGQIP 378
Query: 273 NWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLV 332
+ L + +L L L N SL G I NL+ + +N L+G +P EIG L L
Sbjct: 379 DSLFQL-VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIG-FLGKLE 436
Query: 333 VLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGN 392
++ + N F+G +P GN C L+ + N L G++ S L L RL+L N
Sbjct: 437 IMYLYENRFSGEMPVEIGN-----CTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLREN 491
Query: 393 HFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQ 452
+G+IP +L NC + + ++DN +SG+IP+ G L+ L+ M+ NN L+G +P +
Sbjct: 492 ELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLIN 551
Query: 453 LRHLEILDLSRNNISGSL-PSCSSPFNIRRVHLSKNMLQGPL---LGD--------LSYN 500
L++L ++ S N +GS+ P C S + +++N +G + LG L N
Sbjct: 552 LKNLTRINFSSNKFNGSISPLCGSSSYLS-FDVTENGFEGDIPLELGKSTNLDRLRLGKN 610
Query: 501 RLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYN 560
+ IP ++ +L L ++ N L G +P++L KL +DL++N LSG IP L
Sbjct: 611 QFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK 670
Query: 561 ISF--NYREDNHDLFDQDPQILYQLPQLQILYTNYHN-----HKYLTNFTTKQRLYTYEV 613
+ + ++ P ++ L + L+ + ++ + + N L E
Sbjct: 671 LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEEN 730
Query: 614 Q---PLHSMSG-------LDLSCNKLIGEIPLQIGELSRIHT-LNLSHNNLTGESPVTFS 662
Q PL S G L LS N L GEIP++IG+L + + L+LS+NN TG P T S
Sbjct: 731 QLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTIS 790
Query: 663 HMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEG 722
+ ++ESLDLS+N L G++P ++ ++ +L ++++NNL GK QF ++ D++ G
Sbjct: 791 TLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVG 847
Query: 723 NPFLCGQPLLKSCNENG 739
N LCG P L CN G
Sbjct: 848 NAGLCGSP-LSHCNRAG 863
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
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Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 227/761 (29%), Positives = 358/761 (47%), Gaps = 83/761 (10%)
Query: 29 CQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYF 88
C W + C++T G V+S+ L ++L EG L+ ++ + L++LDL+ +F
Sbjct: 61 CNWTGITCDST-GHVVSVSLL-EKQL---EGVLSPAI-ANLTYLQVLDLTSNSFTGKIPA 114
Query: 89 NMDFCTAFSNSFLQMSELMASLK----------YLSLSNSYLNGTILDQGLCELVYLQEV 138
+ T + L ++ S+ YL L N+ L+G + ++ +C+ L +
Sbjct: 115 EIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEE-ICKTSSLVLI 173
Query: 139 NIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISI 198
D NNL+G +P CL +L +L++ + N LT +I S + L + +L LS N I
Sbjct: 174 GFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS-IGTLANLTDLDLSGNQLTGKI 232
Query: 199 SLEPFFNHSKLK-------FFDGDIYAEI---------ETSHSSLTPKF--------QLT 234
+ F N L+ +GDI AEI E + LT K QL
Sbjct: 233 PRD-FGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQ 291
Query: 235 SISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWL--LEKNKKLKRLSLVNISL 292
++ ++ + + P L+ L ++ LS +L + LE L+ L+L + +
Sbjct: 292 ALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNF 348
Query: 293 FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNT 352
G FP I +NL VL V N + G +P ++G +L NL L+ N G IPSS N
Sbjct: 349 TGEFPQSITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISN- 406
Query: 353 WPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLY 412
C L+ L LS+N + G++ + F L +++ NHF G+IP + NCS L+ L
Sbjct: 407 ----CTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLS 461
Query: 413 ISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS 472
++DNN++G + +G L L + + N L GPIP L+ L IL L N +G +P
Sbjct: 462 VADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPR 521
Query: 473 CSSPFNI-RRVHLSKNMLQGPL-----------LGDLSYNRLNSNIPDWMNRLPQLRYLI 520
S + + + + N L+GP+ + DLS N+ + IP ++L L YL
Sbjct: 522 EMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLS 581
Query: 521 LANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP----HCLYNISFNYREDNHDLFDQD 576
L N G +P L L+ L D+S N L+G IP L N+ N+ L
Sbjct: 582 LQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTI 641
Query: 577 PQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQ 636
P+ L +L +Q + + N+ + + +Q ++ LD S N L G IP +
Sbjct: 642 PKELGKLEMVQEI--DLSNNLFSGSIP-------RSLQACKNVFTLDFSQNNLSGHIPDE 692
Query: 637 IGE-LSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695
+ + + I +LNLS N+ +GE P +F +M + SLDLS NNL G+IP L L+ L
Sbjct: 693 VFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLK 752
Query: 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCG-QPLLKSC 735
+A NNL G P+ F GN LCG + LK C
Sbjct: 753 LASNNLKGHVPES-GVFKNINASDLMGNTDLCGSKKPLKPC 792
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 196/615 (31%), Positives = 307/615 (49%), Gaps = 48/615 (7%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
LQ++ I NL+G+LP L + L++LD+S N L +I S L L +E L L++N
Sbjct: 107 LQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWS-LSKLRNLETLILNSN-- 163
Query: 195 QISISLEPFFNH-SKLK---FFDGDIYAEIETSHSSLTPKFQLTSISLFGHGD-SGIFPK 249
Q++ + P + SKLK FD + I T L+ L I + G+ + SG P
Sbjct: 164 QLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLS---GLEVIRIGGNKEISGQIPS 220
Query: 250 FLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVL 309
+ +L + L+ +++ P+ L K KKL+ LS+ + G P + L L
Sbjct: 221 EIGDCSNLTVLGLAETSVSGNLPSSL-GKLKKLETLSIYTTMISGEIPSDLGNCSELVDL 279
Query: 310 DVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNS 369
+ N L G IP EIG+ L L L + N+ G IP GN C L+ + LS N
Sbjct: 280 FLYENSLSGSIPREIGQ-LTKLEQLFLWQNSLVGGIPEEIGN-----CSNLKMIDLSLNL 333
Query: 370 LQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNL 429
L G + S L+ L+ + N F G IP T+SNCS+L L + N ISG IP+ LG L
Sbjct: 334 LSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTL 393
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF-NIRRVHLSKNM 488
+ L +N+LEG IP L+ LDLSRN+++G++PS N+ ++ L N
Sbjct: 394 TKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNS 453
Query: 489 LQGPL---LGD--------LSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWL 537
L G + +G+ L +NR+ IP + L ++ +L ++N L G++P ++
Sbjct: 454 LSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSC 513
Query: 538 NKLQLVDLSHNNLSGQIPHCLYNIS-FNYREDNHDLFD-QDPQILYQLPQLQ--ILYTNY 593
++LQ++DLS+N+L G +P+ + ++S + + + F + P L +L L IL N
Sbjct: 514 SELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNL 573
Query: 594 HNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIH-TLNLSHNN 652
+ T+ L LDL N+L GEIP ++G++ + LNLS N
Sbjct: 574 FSGSIPTSLGMCSGLQL-----------LDLGSNELSGEIPSELGDIENLEIALNLSSNR 622
Query: 653 LTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQF 712
LTG+ P + + ++ LDLS+N L G + P L + L ++++N+ SG PD F
Sbjct: 623 LTGKIPSKIASLNKLSILDLSHNMLEGDLAP-LANIENLVSLNISYNSFSGYLPDN-KLF 680
Query: 713 GTFEEDSYEGNPFLC 727
EGN LC
Sbjct: 681 RQLSPQDLEGNKKLC 695
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 207/658 (31%), Positives = 316/658 (48%), Gaps = 59/658 (8%)
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGS--LPWCLA-NLTYLRLLDV 164
++LK L+LS ++L+ + LQ +++ NN+SG PW + L +
Sbjct: 160 SNLKSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSI 219
Query: 165 SFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD---GDIYAEIE 221
N+L +I NL+Y++ LS N+F S F + S L+ D Y +I
Sbjct: 220 KGNKLAGSIPELDFKNLSYLD---LSANNF--STVFPSFKDCSNLQHLDLSSNKFYGDIG 274
Query: 222 TSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKK 281
+S SS +L+ ++L + G+ PK L+Y+ L + +PN L + K
Sbjct: 275 SSLSSCG---KLSFLNLTNNQFVGLVPKL--PSESLQYLYLRGNDFQGVYPNQLADLCKT 329
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
+ L L + G P + +L ++D+SNN G +P++ L N+ + ++ N F
Sbjct: 330 VVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKF 389
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSK--EFNLTKLKRLNLDGNHFIGDIP 399
G +P SF N LE L +S+N+L G + S + + LK L L N F G IP
Sbjct: 390 VGGLPDSFSNLPK-----LETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIP 444
Query: 400 KTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEIL 459
+LSNCS L L +S N ++G+IP+ LG+LS L +++ N+L G IP L+ LE L
Sbjct: 445 DSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENL 504
Query: 460 DLSRNNISGSLP-SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518
L N+++G +P S S+ + + LS N L G IP + RL L
Sbjct: 505 ILDFNDLTGPIPASLSNCTKLNWISLSNNQLSG-------------EIPASLGRLSNLAI 551
Query: 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFN------------YR 566
L L NN + G +P +L L +DL+ N L+G IP L+ S N Y
Sbjct: 552 LKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYI 611
Query: 567 EDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSG----L 622
+++ L + ++ + + ++ NFT R+Y QP + +G L
Sbjct: 612 KNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFT---RVYRGITQPTFNHNGSMIFL 668
Query: 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIP 682
DLS NKL G IP ++G + + LNL HN+L+G P +K V LDLSYN NG IP
Sbjct: 669 DLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIP 728
Query: 683 PRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNENGP 740
L L L ++ NNLSG P+ A F TF + + N LCG PL C+ +GP
Sbjct: 729 NSLTSLTLLGEIDLSNNNLSGMIPES-APFDTFPDYRFANNS-LCGYPLPLPCS-SGP 783
|
Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development. Solanum peruvianum (taxid: 4082) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 206/658 (31%), Positives = 315/658 (47%), Gaps = 59/658 (8%)
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGS--LPWCLA-NLTYLRLLDV 164
++LK L+LS ++L+ + LQ +++ NN+SG PW + L +
Sbjct: 160 SNLKSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSL 219
Query: 165 SFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD---GDIYAEIE 221
N+L +I NL+Y++ LS N+F S F + S L+ D Y +I
Sbjct: 220 KGNKLAGSIPELDFKNLSYLD---LSANNF--STVFPSFKDCSNLQHLDLSSNKFYGDIG 274
Query: 222 TSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKK 281
+S SS +L+ ++L + G+ PK L+Y+ L + +PN L + K
Sbjct: 275 SSLSSCG---KLSFLNLTNNQFVGLVPKL--PSESLQYLYLRGNDFQGVYPNQLADLCKT 329
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
+ L L + G P + +L ++D+S N G +P++ L N+ + ++ N F
Sbjct: 330 VVELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKF 389
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSK--EFNLTKLKRLNLDGNHFIGDIP 399
G +P SF N LE L +S+N+L G + S + + LK L L N F G IP
Sbjct: 390 VGGLPDSFSN-----LLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIP 444
Query: 400 KTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEIL 459
+LSNCS L L +S N ++G+IP+ LG+LS L +++ N+L G IP L+ LE L
Sbjct: 445 DSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENL 504
Query: 460 DLSRNNISGSLP-SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518
L N+++G +P S S+ + + LS N L G IP + RL L
Sbjct: 505 ILDFNDLTGPIPASLSNCTKLNWISLSNNQLSG-------------EIPASLGRLSNLAI 551
Query: 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFN------------YR 566
L L NN + G +P +L L +DL+ N L+G IP L+ S N Y
Sbjct: 552 LKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYI 611
Query: 567 EDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSG----L 622
+++ L + ++ + + ++ NFT R+Y QP + +G L
Sbjct: 612 KNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFT---RVYRGITQPTFNHNGSMIFL 668
Query: 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIP 682
DLS NKL G IP ++G + + LNL HN+L+G P +K V LDLSYN NG IP
Sbjct: 669 DLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIP 728
Query: 683 PRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNENGP 740
L L L ++ NNLSG P+ A F TF + + N LCG PL C+ +GP
Sbjct: 729 NSLTSLTLLGEIDLSNNNLSGMIPES-APFDTFPDYRFANNS-LCGYPLPIPCS-SGP 783
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 192/599 (32%), Positives = 292/599 (48%), Gaps = 50/599 (8%)
Query: 137 EVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQ- 195
E+ + R LSG L +A L L++L+++ N L+ +I++S L+NL+ +E L LS+N F
Sbjct: 90 ELELGRRKLSGKLSESVAKLDQLKVLNLTHNSLSGSIAAS-LLNLSNLEVLDLSSNDFSG 148
Query: 196 ISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQH 255
+ SL + L ++ + I S + P+ + I L + G P + +
Sbjct: 149 LFPSLINLPSLRVLNVYENSFHGLIPASLCNNLPRIR--EIDLAMNYFDGSIPVGIGNCS 206
Query: 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNK 315
+EY+ L+ NL+ P L + + L L+L N L G + NL LD+S+NK
Sbjct: 207 SVEYLGLASNNLSGSIPQELFQLSN-LSVLALQNNRLSGALSSKLGKLSNLGRLDISSNK 265
Query: 316 LQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLF 375
G IP ++ L L + +N FNG +P S N+ + L L NN+L GQ++
Sbjct: 266 FSGKIP-DVFLELNKLWYFSAQSNLFNGEMPRSLSNSRS-----ISLLSLRNNTLSGQIY 319
Query: 376 SKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAI 435
+T L L+L N F G IP L NC L+ + + IP N L ++
Sbjct: 320 LNCSAMTNLTSLDLASNSFSGSIPSNLPNCLRLKTINFAKIKFIAQIPESFKNFQSLTSL 379
Query: 436 MMPNNRLEGPIPSAFCQLRH---LEILDLSRNNISGSLPSCSSP--FNIRRVHLSKNMLQ 490
N+ ++ SA L+H L+ L L+ N LPS S N++ + ++ L+
Sbjct: 380 SFSNSSIQNIS-SALEILQHCQNLKTLVLTLNFQKEELPSVPSLQFKNLKVLIIASCQLR 438
Query: 491 GPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550
G +P W++ P L+ L L+ N L G +P L LN L +DLS+N
Sbjct: 439 G-------------TVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSNNTF 485
Query: 551 SGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYT 610
G+IPH L ++ ++N + + P P + TN +Y
Sbjct: 486 IGEIPHSLTSLQSLVSKENA-VEEPSPD----FPFFKKKNTNAGGLQY------------ 528
Query: 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESL 670
QP +DLS N L G I + G+L ++H LNL +NNL+G P S M +E L
Sbjct: 529 --NQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVL 586
Query: 671 DLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQ 729
DLS+NNL+G IPP L++L+ L+ FSVA+N LSG P V QF TF S+EGN LCG+
Sbjct: 587 DLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGV-QFQTFPNSSFEGNQGLCGE 644
|
Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis. Daucus carota (taxid: 4039) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 212/760 (27%), Positives = 334/760 (43%), Gaps = 130/760 (17%)
Query: 29 CQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSIL-NFKNL-- 85
C W V C + G+++ LDL + G L L++L+ L N +NL
Sbjct: 66 CSWRGVSC-SDDGRIVGLDLRNSGLTG---------------TLNLVNLTALPNLQNLYL 109
Query: 86 --EYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRN 143
YF+ ++ S+ +LQ+ +L SNS + +++D + L VNI N
Sbjct: 110 QGNYFSSGGDSSGSDCYLQVLDLS--------SNSISDYSMVDYVFSKCSNLVSVNISNN 161
Query: 144 NLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNL-TYIEELWLSNNHFQISISLEP 202
L G L + ++L L +D+S+N L++ I S + + ++ L L++N+ S
Sbjct: 162 KLVGKLGFAPSSLQSLTTVDLSYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLS 221
Query: 203 FFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDL 262
F L FF S ++L+ GD FP L + LE +++
Sbjct: 222 FGICGNLTFF--------SLSQNNLS-------------GDK--FPITLPNCKFLETLNI 258
Query: 263 SHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPI 322
S NL + PN +G F +NL+ L +++N+L G IP
Sbjct: 259 SRNNLAGKIPNG----------------EYWGSF-------QNLKQLSLAHNRLSGEIPP 295
Query: 323 EIGEVLPNLVVLNVATNAFNGSIPSSF-----------GNTWPWGCFY---------LEY 362
E+ + LV+L+++ N F+G +PS F GN + G F + Y
Sbjct: 296 ELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITY 355
Query: 363 LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK---TLSNCSALQGLYISDNNIS 419
L ++ N++ G + N + L+ L+L N F G++P +L + L+ + I++N +S
Sbjct: 356 LYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLS 415
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS--CSSPF 477
G +P LG L I + N L GPIP L +L L + NN++G++P C
Sbjct: 416 GTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGG 475
Query: 478 NIRRVHLSKNMLQGPLLG-----------DLSYNRLNSNIPDWMNRLPQLRYLILANNGL 526
N+ + L+ N+L G + LS NRL IP + L +L L L NN L
Sbjct: 476 NLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSL 535
Query: 527 EGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYN--------------ISFNYREDNHDL 572
G +P QL L +DL+ NNL+G +P L + +F E D
Sbjct: 536 SGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDC 595
Query: 573 FDQDPQILYQLPQLQILYTNYHNHKY-LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG 631
+ ++ + + L H T + +YT+ SM D+S N + G
Sbjct: 596 RGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSAN--GSMIYFDISYNAVSG 653
Query: 632 EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691
IP G + + LNL HN +TG P +F +K + LDLS+NNL G +P L L+ L
Sbjct: 654 FIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFL 713
Query: 692 AVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731
+ V+ NNL+G P Q TF Y N LCG PL
Sbjct: 714 SDLDVSNNNLTGPIPFG-GQLTTFPVSRYANNSGLCGVPL 752
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 195/653 (29%), Positives = 309/653 (47%), Gaps = 62/653 (9%)
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGS--LPWCLAN-LTYLRLLDV 164
+ LK+L++S++ L+ G +L L+ +++ N++SG+ + W L++ L+ L +
Sbjct: 148 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 207
Query: 165 SFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNH-SKLKFFD-------GDI 216
S N+++ ++ S +NL +++ +S+N+F I PF S L+ D GD
Sbjct: 208 SGNKISGDVDVSRCVNLEFLD---VSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF 261
Query: 217 YAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLL 276
I T + +L +IS + + P L+Y+ L+ T E P++L
Sbjct: 262 SRAIST-----CTELKLLNIS----SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS 312
Query: 277 EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNV 336
L L L +G P L L +S+N G +P++ + L VL++
Sbjct: 313 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 372
Query: 337 ATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTK--LKRLNLDGNHF 394
+ N F+G +P S N L L LS+N+ G + K L+ L L N F
Sbjct: 373 SFNEFSGELPESLTNL----SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 428
Query: 395 IGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLR 454
G IP TLSNCS L L++S N +SG IP+ LG+LS L + + N LEG IP ++
Sbjct: 429 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 488
Query: 455 HLEILDLSRNNISGSLPS-CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRL 513
LE L L N+++G +PS S+ N+ + LS NRL IP W+ RL
Sbjct: 489 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSN-------------NRLTGEIPKWIGRL 535
Query: 514 PQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLY----NISFNYREDN 569
L L L+NN G +P +L L +DL+ N +G IP ++ I+ N+
Sbjct: 536 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 595
Query: 570 HDLFDQDPQILYQ------LPQLQILYTNYHNHKYLTN-FTTKQRLYTYEVQPL----HS 618
++ ++ + + L + Q + + N N R+Y P S
Sbjct: 596 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 655
Query: 619 MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
M LD+S N L G IP +IG + + LNL HN+++G P ++ + LDLS N L+
Sbjct: 656 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 715
Query: 679 GKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731
G+IP + L L ++ NNLSG P+ + QF TF + NP LCG PL
Sbjct: 716 GRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPL 767
|
Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 214/751 (28%), Positives = 315/751 (41%), Gaps = 148/751 (19%)
Query: 11 QEGYALLKLKHDFFN----------------NHCCQWACVECNTTTGKVISLDLDGTRKL 54
+E ALLK K F N + C W V C + G +I L+L T
Sbjct: 49 EEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVAC--SLGSIIRLNLTNTGIE 106
Query: 55 GDGEGYLNASLFTSFQQLELLDLSI-----------LNFKNLEYFNMDFCTAFSNSFLQM 103
G E + F+S L +DLS+ F LEYF++ ++
Sbjct: 107 GTFEDFP----FSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPEL 162
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
+L ++L L L + LNG+I + + L + E+ I N L+G +P NLT L L
Sbjct: 163 GDL-SNLDTLHLVENKLNGSIPSE-IGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLY 220
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHF--QISISLEPFFNHSKLKFFDGDIYAEIE 221
+ N L+ +I S + NL + EL L N+ +I S N + L F+ + EI
Sbjct: 221 LFINSLSGSIPSE-IGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIP 279
Query: 222 TSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKK 281
++T
Sbjct: 280 PEIGNMT----------------------------------------------------A 287
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
L LSL L GP P + K L VL + N+L G IP E+GE + +++ L ++ N
Sbjct: 288 LDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGE-MESMIDLEISENKL 346
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKT 401
G +P SFG LE+L L +N L G + N T+L L LD N+F G +P T
Sbjct: 347 TGPVPDSFGK-----LTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDT 401
Query: 402 LSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDL 461
+ L+ L + DN+ G +P L + L + N G I AF L +DL
Sbjct: 402 ICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDL 461
Query: 462 SRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGD--LSYNRLNSNIPDWMNRLPQLRYL 519
S NN G LS N Q L LS N + IP + + QL L
Sbjct: 462 SNNNFHG--------------QLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQL 507
Query: 520 ILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS-FNYREDNHDLFDQD-P 577
L++N + GE+P + +N++ + L+ N LSG+IP + ++ Y + + + F + P
Sbjct: 508 DLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIP 567
Query: 578 QILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQI 637
L LP RLY ++LS N L IP +
Sbjct: 568 PTLNNLP----------------------RLYY-----------MNLSRNDLDQTIPEGL 594
Query: 638 GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697
+LS++ L+LS+N L GE F ++ +E LDLS+NNL+G+IPP ++ AL V+
Sbjct: 595 TKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVS 654
Query: 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCG 728
NNL G PD A F D++EGN LCG
Sbjct: 655 HNNLQGPIPDNAA-FRNAPPDAFEGNKDLCG 684
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 740 | ||||||
| 255581263 | 912 | serine-threonine protein kinase, plant-t | 0.963 | 0.781 | 0.463 | 1e-178 | |
| 359476165 | 1464 | PREDICTED: LRR receptor-like serine/thre | 0.885 | 0.447 | 0.454 | 1e-146 | |
| 224142481 | 781 | predicted protein [Populus trichocarpa] | 0.848 | 0.804 | 0.461 | 1e-140 | |
| 224134891 | 953 | predicted protein [Populus trichocarpa] | 0.986 | 0.766 | 0.396 | 1e-137 | |
| 224073436 | 1014 | predicted protein [Populus trichocarpa] | 0.978 | 0.714 | 0.407 | 1e-135 | |
| 224112245 | 876 | predicted protein [Populus trichocarpa] | 0.918 | 0.776 | 0.404 | 1e-134 | |
| 359484714 | 862 | PREDICTED: probable LRR receptor-like se | 0.971 | 0.834 | 0.405 | 1e-131 | |
| 224073422 | 969 | predicted protein [Populus trichocarpa] | 0.974 | 0.744 | 0.397 | 1e-129 | |
| 224123984 | 1016 | predicted protein [Populus trichocarpa] | 0.910 | 0.663 | 0.421 | 1e-127 | |
| 224124000 | 920 | predicted protein [Populus trichocarpa] | 0.874 | 0.703 | 0.423 | 1e-124 |
| >gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 393/847 (46%), Positives = 500/847 (59%), Gaps = 134/847 (15%)
Query: 6 EGCLEQEGYALLKLKHDFFNN--------------HCCQWACVECNTTTGKVISLDLDGT 51
+GCL++E ALL+LK FF++ CCQW VEC++ TG+V LDLD T
Sbjct: 21 KGCLDKERAALLQLK-PFFDSTLALQKWLGAEDNLDCCQWERVECSSITGRVTRLDLDTT 79
Query: 52 RKLGDGEG-YLNASLFTSFQQ-----------------------------LELLDLS--- 78
R YLNASLF F++ LE+LDLS
Sbjct: 80 RAYQSSRNWYLNASLFLPFEELKSLSLKGNSIVDCVENEGFERLSTRLSSLEVLDLSYNS 139
Query: 79 ---------------------------------ILNFKNLEYFNMDFCTAFSNSFLQMSE 105
+ NF+NLE +D NSFLQ
Sbjct: 140 FNESILSSLSEFSSLKSLNLGFNPFEVPIQAQDLPNFENLEELYLD-KIELENSFLQTVG 198
Query: 106 LMASLKYLSLSNSYLNGTILD-QGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDV 164
+M SLK LSLS L G + + QGLCEL++L+ +++ N G LPWCL+NLT L+LLD+
Sbjct: 199 VMTSLKVLSLSGCGLTGALPNVQGLCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDL 258
Query: 165 SFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGD---IYAEIE 221
S NQ +IS+SPL L + +L +SNNHFQ+ SL PFFNHS LK G IY E E
Sbjct: 259 SSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLEAE 318
Query: 222 TSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKK 281
HS+ P+FQL SI G+G G FP FLYHQ++L++VDLSHL+L EFPNWLL N +
Sbjct: 319 L-HSA--PRFQLISIIFSGYGICGTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTR 375
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
L+ L LVN SL G LP+H H NL LD+SNN + HIP+EIG LP L +LN+++N F
Sbjct: 376 LEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGF 435
Query: 342 NGSIPSSFGNT--------------------WPWGCFYLEYLVLSNNSLQGQLFSKEFNL 381
+GSIPSSFGN GCF L L+LSNNSLQGQ+FSK+FNL
Sbjct: 436 DGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNL 495
Query: 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNR 441
T L L LD NHF G IPK+LS SAL + +SDN++SG IP +GNLS+L +++ NNR
Sbjct: 496 TNLWWLELDKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNR 554
Query: 442 LEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGP--------- 492
L+GPIP FCQL +LE+LDL+ N++SG LPSC SP +I VHLS+NM++GP
Sbjct: 555 LKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSH 614
Query: 493 --LLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550
+ DLS NR+ IP + + LR L L +N +GE+P Q+C L +L L+ L+ NNL
Sbjct: 615 FLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNL 674
Query: 551 SGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYT 610
SG IP CL DQ + +P + Y+ FTTK+R Y+
Sbjct: 675 SGSIPSCLQ-------------LDQSDSLAPDVPPVPNPLNPYYLPVRPMYFTTKRRSYS 721
Query: 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESL 670
Y+ + L +SG+D SCNKL GEIP ++G S I++LNLS+N TG P TFS++KQ+ESL
Sbjct: 722 YQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESL 781
Query: 671 DLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730
DLSYNNLNG IP +L+EL L+ FSVA NNL GKTP R QF TFE SYEGNP LCG P
Sbjct: 782 DLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLP 841
Query: 731 LLKSCNE 737
L KSC E
Sbjct: 842 LPKSCTE 848
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 320/704 (45%), Positives = 419/704 (59%), Gaps = 49/704 (6%)
Query: 81 NFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILD-QGLCELVYLQEVN 139
N +NLE ++ T S+S LQ+ E+M SLK LSL ++ +NG+ QGLC+L LQE++
Sbjct: 690 NLRNLEVLDLS-STNISSSILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELD 748
Query: 140 IDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISIS 199
+ N GS+ CL NLT LR LD+S N+ + N+ SS L +E L LS+N FQ
Sbjct: 749 LSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPP 808
Query: 200 LEPFFNHSKLKFFD---GDIYAEIETSHSSLTPKFQLTSISLFGHG-DSGIFPKFLYHQH 255
+ F HSKL+ D G+ +E+ + P FQL L +G P FL++QH
Sbjct: 809 ISSFAKHSKLEVLDLICGNNTLLLESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQH 868
Query: 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNK 315
DL VDLS+ +L +FP WL++ N +L+ L+L N SL G F LP + +D+SNN
Sbjct: 869 DLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNL 928
Query: 316 LQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFG-------------------NTWPWG 356
LQG +P I LPNL+ LNV+ N+F GSIPS G G
Sbjct: 929 LQGQMPSNISVSLPNLMFLNVSRNSFEGSIPSFGGMRKLLFLDLSNNLFTGGIPEDLAMG 988
Query: 357 CFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416
C LEYL+LS N L GQ+F + NL L+ L LD NHF G IP LSN S L+ LY+S N
Sbjct: 989 CPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHN 1047
Query: 417 NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSP 476
+ISG +P +GN+S L A++MPNN LEGPIP FC L LE+LDLS NN+SGSLPSC SP
Sbjct: 1048 SISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSP 1107
Query: 477 FNIRRVHLSKNMLQGPLLG-----------DLSYNRLNSNIPDWMNRLPQLRYLILANNG 525
+ VHL +N L GPL D+ N L+ IPDW++ L L+L N
Sbjct: 1108 SLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNH 1167
Query: 526 LEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFN--YREDNHDLFDQDPQ----- 578
+G++P QLC L+K+ ++DLS+N+LSG IP CL I F +R + P
Sbjct: 1168 FQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSS 1227
Query: 579 ILYQLPQLQILYTNYHNH-----KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEI 633
LY +++ N +++ K + FTTK R Y+ L+SM+G+DLS NKL G I
Sbjct: 1228 YLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAI 1287
Query: 634 PLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAV 693
P +IG LS++H LNLSHN LTG P FS +K +ESLDLSYNNL G IP L EL LAV
Sbjct: 1288 PPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAV 1347
Query: 694 FSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNE 737
FSVA+NNLSGK P+ AQFGTF E+SY GNP+LCG L K+C+
Sbjct: 1348 FSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLLRKNCSR 1391
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 326/706 (46%), Positives = 420/706 (59%), Gaps = 78/706 (11%)
Query: 80 LNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVN 139
L LE + F ++S L E ++SLK+L+L N+ L G+I +GLCEL LQE++
Sbjct: 25 LRLNKLEILELSF-NKINDSTLSFLEGLSSLKHLNLDNNQLKGSIDMKGLCELKQLQELD 83
Query: 140 IDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISIS 199
I N+L+G LP CL NL L++LD+SFN + NIS S + +LT I +L LS+NHFQI IS
Sbjct: 84 ISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLTSIRDLKLSDNHFQIPIS 142
Query: 200 LEPFFNHSKLKFFDGD---IYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHD 256
L PFFN S LK +GD IY E H+ L P+FQL +SL HG G FPKFLY+QHD
Sbjct: 143 LGPFFNLSNLKNLNGDHNEIYESTELVHN-LIPRFQLQRLSLACHGFGGTFPKFLYYQHD 201
Query: 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKL 316
L++VDLSH+ + EFP+WLL+ N KL+ L LVN SL G LP H NL LD+S N +
Sbjct: 202 LQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHI 261
Query: 317 QGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWG-------------------- 356
Q IP +IG P L LN++ N F+GSIPSS N G
Sbjct: 262 QNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEG 321
Query: 357 CFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416
C L LVLSNN L+GQ F + FNL L L L GN G +P +LSN S L+ L +S N
Sbjct: 322 CLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLN 381
Query: 417 NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS--CS 474
N+SG IP +G +S L+ LDLS NN+ GSLPS CS
Sbjct: 382 NLSGKIPRWIGYMS------------------------SLQYLDLSENNLYGSLPSSFCS 417
Query: 475 SPFNIRRVHLSKNMLQGPLLG-----------DLSYNRLNSNIPDWMNRLPQLRYLILAN 523
S + V+LSKN L+G L+G DLS+N IP+ + L +L +L+L
Sbjct: 418 SR-TMTEVYLSKNKLEGSLIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGY 476
Query: 524 NGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDL---------FD 574
N LEG++P QLC L KL L+DLSHN+L G I CL S RE L +
Sbjct: 477 NNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGREN 536
Query: 575 QDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIP 634
+ PQI++ +P ++ N FTTK Y+++ L +SG+DLSCN L GEIP
Sbjct: 537 RGPQIVFPVPAVEDPSMNKS-----VEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIP 591
Query: 635 LQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694
+++G LS I LNLSHN+LTG P TFS++K++ESLDLSYNNLNG+IP +L++LN L+ F
Sbjct: 592 VELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAF 651
Query: 695 SVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNENGP 740
SVA NNLSGKTP+ VAQF TF + YEGNP LCG PL ++C P
Sbjct: 652 SVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALP 697
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 337/851 (39%), Positives = 448/851 (52%), Gaps = 121/851 (14%)
Query: 7 GCLEQEGYALLKLKHDFFNNH------------CCQWACVECNTTTGKVISLDLDGTRKL 54
GCLE+E LL++++ NH CC+W ++C+ TT +VI L L G R
Sbjct: 22 GCLEEERVGLLEIQYLIDPNHVSLRDWMDINSSCCEWDWIKCDNTTRRVIQLSLGGERDE 81
Query: 55 GDGEGYLNASLFTSFQQLELL--------------------------DLSILNFKN---- 84
G+ LNASLF F++L+ L DLS F N
Sbjct: 82 SLGDWVLNASLFQPFKELQSLDLGMTSLVGCLENEGFEVLSSKLRNLDLSANGFNNDKSI 141
Query: 85 LEYFNMDFCT----------------AFSNS----------------FLQMSELMASLKY 112
L FN + T F NS FLQ + +LK
Sbjct: 142 LSCFNGNLSTLKSLDLSANGLTAGSGTFFNSSTLEELYLDNTSLRINFLQNIGALPALKV 201
Query: 113 LSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTEN 172
LS++ L+GT+ QG CEL L+++++ RNN GSLP CL NL+ L+LLDVS NQ T N
Sbjct: 202 LSVAECDLHGTLPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQLLDVSENQFTGN 261
Query: 173 ISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFF--DGDIYAEIETSHSSLTPK 230
+S PL NL +E L LSNN F++ IS++PF NHS LKFF + + + +L PK
Sbjct: 262 FTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLVTEPVAFDNLIPK 321
Query: 231 FQLTSISLFGHGDS---GIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL 287
FQL L S + P FLY+Q DL +DLSH N+T FP+WLL+ N +L++L L
Sbjct: 322 FQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYL 381
Query: 288 VNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPS 347
G L H + N+ LD+SNN + G I +I + PNL L +A N F G IPS
Sbjct: 382 SANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPS 441
Query: 348 SFGN---------------TWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGN 392
GN T + L LSNNSL GQ+ + FN + + L L+GN
Sbjct: 442 CLGNISSLLFLDLSNNQLSTVQLEQLTIPVLKLSNNSLGGQIPTSVFNSSTSQFLYLNGN 501
Query: 393 HFIGDIPK-TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFC 451
+F G I L L L +S+N SG +P N + L + + N +GPIP FC
Sbjct: 502 NFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFC 561
Query: 452 QLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPL-----------LGDLSYN 500
+L L+ LDLS NN+SG +PSC SP + VHLSKN L GPL DL N
Sbjct: 562 KLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYGFFNSSYLVTMDLRDN 621
Query: 501 RLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYN 560
L +IP+W+ L L+L N +GE+P+QLC L +L ++D+S N LSG +P CL N
Sbjct: 622 SLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGN 681
Query: 561 ISF--NYREDNHDL-----FDQDPQILYQL---PQLQILYTNYHNHKY-----LTNFTTK 605
++F + ++ DL + + Y+ P + +Y + + + F TK
Sbjct: 682 LTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVIEFRTK 741
Query: 606 QRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMK 665
Y Y+ L MSG+DLS N G IP + G LS I +LNLSHNN T P TFS++K
Sbjct: 742 NMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHNNPTESIPATFSNLK 801
Query: 666 QVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPF 725
Q+ESLDLSYNNLNG IPP+L E+ L VFSVA NNLSG TP+R QFGTF+E YEGNPF
Sbjct: 802 QIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQFGTFDESCYEGNPF 861
Query: 726 LCGQPLLKSCN 736
LCG PL +C+
Sbjct: 862 LCGPPLRNNCS 872
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 336/825 (40%), Positives = 447/825 (54%), Gaps = 101/825 (12%)
Query: 7 GCLEQEGYALLK-------LKHDFFNNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEG 59
GCLE EG+ +L L + FNN + + C T + SLDL G G G
Sbjct: 111 GCLENEGFEVLSSNLRNLDLSDNRFNN---DKSILSCMTGLSTLKSLDLSGNGLTGSGFE 167
Query: 60 YLNASLFTSFQQLELLDLS-------------------------------------ILNF 82
+++ L ++L+ LDLS N
Sbjct: 168 IISSHL----EKLDNLDLSYNIFNDSILSHLRGLSYLKSLNLSGNMLLGSTTVNGTFFNS 223
Query: 83 KNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDR 142
LE +D T+ +FLQ + LK LS++ L+GT+ QG CEL L+++++
Sbjct: 224 STLEELYLDR-TSLPINFLQNIGALPDLKVLSVAECDLHGTLPAQGWCELKNLRQLDLSG 282
Query: 143 NNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEP 202
NNL GSLP CL NL+ L+LLDVS NQ T NI+S PL NLT +E L LSNN F++ IS++P
Sbjct: 283 NNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKP 342
Query: 203 FFNHSKLKFFDGDIYAEIE--TSHSSLTPKFQLTSISLFGHGDS--GIFPKFLYHQHDLE 258
F NHS LKFF + + + +L PKFQL L ++ P FLY+Q+D+
Sbjct: 343 FMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIR 402
Query: 259 YVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQG 318
+DLSH N+T FP+WLL+ N +L++L L N S G L H + N+ LD+SNN + G
Sbjct: 403 VLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNG 462
Query: 319 HIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLE----------------Y 362
IP +I + PN+ L +A N F G IPS GN L +
Sbjct: 463 QIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTTIWF 522
Query: 363 LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNNISGN 421
L LSNN+L GQL + FN + L+ L L GN+F G I L L +SDN SG
Sbjct: 523 LKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGM 582
Query: 422 IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRR 481
+P L N + L AI + N +GPI FC+L LE LDLS NN+SG +PSC SP I
Sbjct: 583 LPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITH 642
Query: 482 VHLSKNMLQGPLL-----------GDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530
VHLS+N L GPL DL N + P+W+ L L L+L N +GE+
Sbjct: 643 VHLSENRLSGPLTYGFYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGEL 702
Query: 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQIL--------YQ 582
P+QLC L +L ++D+S N LSG +P CL N++F L D +L Y+
Sbjct: 703 PVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFK-ESSQKTLADLGADVLSRSIEKAYYE 761
Query: 583 LPQLQILYTNYHNHK-YLTNFT-------TKQRLYTYEVQPLHSMSGLDLSCNKLIGEIP 634
++ + Y+ K +L NFT TK Y Y+ + L MSG+DLS N +G IP
Sbjct: 762 TMGPPLVESMYNLRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIP 821
Query: 635 LQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694
+ G+LS+I +LNLSHNNLTG P TFS++KQ+ESLDLSYNNLNG IPP+L ++ L VF
Sbjct: 822 PEFGDLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVF 881
Query: 695 SVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNENG 739
SVA NNLSG TP+R QFGTF+E YEGNPFLCG PL +C+E
Sbjct: 882 SVAHNNLSGNTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEA 926
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 343/847 (40%), Positives = 449/847 (53%), Gaps = 167/847 (19%)
Query: 2 GWWSEGCLEQEGYALLKLKHDFFN--------------NHCCQWACVECNTTTGKVISLD 47
GW GCLE+E ALL LK D FN HCC W +EC+++TG+VI L
Sbjct: 20 GWLPLGCLEEERIALLHLK-DAFNYPNGTSLPSWIKDDAHCCDWEHIECSSSTGRVIELV 78
Query: 48 LDGTRKLGDGEGYLNASLFTSFQQLELLDLS---------ILNFKNLEYFNMDFCTAFSN 98
LD TR G+ Y NASLF FQQLE L LS I NL Y ++ T +
Sbjct: 79 LDSTRNEEVGDWYFNASLFRPFQQLEWLSLSYNRIAGWVEIKGPNNLRYLSLKNITTNGS 138
Query: 99 SFLQMSEL-------------------------------------------------MAS 109
SF +S L ++S
Sbjct: 139 SFQLLSSLGAFPNLTTVYLNDNDFKGTILELQNLSSLEKLYLNGCFLDENSIQILGALSS 198
Query: 110 LKYLSL------------------------SNSYLNGTILDQGLCELVYLQEVNIDRNNL 145
LKYLSL SNS L+ +IL Q + + L+ + + + L
Sbjct: 199 LKYLSLYEVSGIVPSQGFLNILKNLEHLYSSNSTLDNSIL-QSIGTITSLKILELVKCRL 257
Query: 146 SGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFN 205
+G LP L NL L+ LD+ N ++ + L NLT ++ L LS+NH +I +SL P +N
Sbjct: 258 NGQLPIGLCNLNNLQELDMRDNDISGFLIPC-LANLTSLQRLDLSSNHLKIPMSLSPLYN 316
Query: 206 HSKLKFF---DGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVD 261
SKLK F D +IYAE E H +L+PKFQL S+ L HG FP+FLYHQ +L+ +D
Sbjct: 317 LSKLKSFHGLDNEIYAE-EDDH-NLSPKFQLQSLYLSNHGQGARAFPRFLYHQLNLQSLD 374
Query: 262 LSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIP 321
L+++ + +FPNWL+E N LK L L N SL GPF LP + H NL +L +S N LQG IP
Sbjct: 375 LTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGPFLLPKNSHMNLSILSISMNYLQGQIP 434
Query: 322 IEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSK-EFN 380
EIG LP L VL+++ N FNGSIPSS N L L LSNN L G++ +
Sbjct: 435 SEIGAHLPRLTVLSMSHNGFNGSIPSSLSNM-----SLLRDLDLSNNVLTGRIPKHLTTS 489
Query: 381 LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440
L L L N G IP ++SNCS+LQ L +S+NN+S IP + ++SFLD
Sbjct: 490 LCLFNFLILSNNSLQGAIPDSMSNCSSLQLLDVSNNNLSPRIPGWIWSMSFLD------- 542
Query: 441 RLEGPIPSAFCQLRHLEILDLSRNNISGSL-PSCSSPFNIRRVHLSKNMLQGPLLG---- 495
LDLSRNN SG L P+ S+ +R V+LS+N LQG +
Sbjct: 543 -----------------FLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQGLITKAFYN 585
Query: 496 -------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHN 548
DLS+N L IP+W+ L +LRYL+L+ N LEGE+P+QLC L+ L L+DLSHN
Sbjct: 586 FSTLLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHN 645
Query: 549 NLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRL 608
+LSG I C+ +++ + + + Q L FTTK
Sbjct: 646 HLSGNILSCMTSLAPFSALTDATIVETSQQYL--------------------EFTTKNVS 685
Query: 609 YTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVE 668
Y + SG+D SCN G+IP +I LS+I LNLSHN+L G P TFS +K++E
Sbjct: 686 LIYRGSIVKLFSGIDFSCNNFTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIE 745
Query: 669 SLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCG 728
SLDLS+N L+G+IPP+L EL +L +FSVA NNLSGKTP RVAQF TFEE Y+ NPFLCG
Sbjct: 746 SLDLSHNKLDGEIPPQLTELFSLEIFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCG 805
Query: 729 QPLLKSC 735
+PL K C
Sbjct: 806 EPLPKIC 812
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484714|ref|XP_002264041.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 323/796 (40%), Positives = 446/796 (56%), Gaps = 77/796 (9%)
Query: 9 LEQEGYALLKLKHDFFNNH---------------CCQWACVECNTTTGKVISLDLDGTRK 53
+E+E LL+LK NH CC+W V C+ T +VI L L R
Sbjct: 1 MEEEKVGLLQLKASI--NHPNGTALSSWGAEVGDCCRWRYVTCDNKTSRVIRLSLSSIRD 58
Query: 54 LGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFN-MDFCTAFSNSFL----QMSELMA 108
GE LNASL FQQL++LD++ L+Y + ++ NS + + ++
Sbjct: 59 SELGEWSLNASLLLPFQQLQILDMAENGLTGLKYLSRLEVLNLKWNSLMGGIPPIISTLS 118
Query: 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQ 168
LK L+L + LNG++ +GLC+L L+ +++ RN GSLP CL NLT LRLLD+S N
Sbjct: 119 HLKSLTLRYNNLNGSLSMEGLCKL-NLEALDLSRNGFEGSLPACLNNLTSLRLLDLSEND 177
Query: 169 LTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD---GDIYAEIETSHS 225
+ I SS NL +E + LS+NHF+ SI FNHS+L FD + Y ++ET +
Sbjct: 178 FSGTIPSSLFSNLKSLEYISLSDNHFEGSIHFGSLFNHSRLVVFDLASNNKYLKVETENP 237
Query: 226 SLT-PKFQLTSISLFG---HGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKK 281
+ P FQL + L + S + P FL Q+DL VDLSH N+T + P WLL+ N K
Sbjct: 238 IWSFPLFQLKILRLSNCTLNWPSWVLPSFLPSQYDLRMVDLSHNNITGDIPTWLLDNNTK 297
Query: 282 LKRLSLVNISLFGPFPLPIHC-HKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNA 340
L+ LS + SL G LP + H ++ +LD S+N + G +P IG + P L VLN++ NA
Sbjct: 298 LEYLSFGSNSLTGVLDLPSNSKHSHMLLLDFSSNCIHGELPPFIGSIFPGLEVLNLSRNA 357
Query: 341 FNGSIPSSFGNT--------------------WPWGCFYLEYLVLSNNSLQGQLFSKEFN 380
G+IPSS G+ GC L L LSNNSL G L +K N
Sbjct: 358 LQGNIPSSMGDMEQLVSLDLSNNNLSGQLPEHMMMGCISLLVLKLSNNSLHGTLPTKS-N 416
Query: 381 LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440
LT L L+LD N+F G+I + N S+LQ L IS N++ G IP +G+ S L + + N
Sbjct: 417 LTDLFFLSLDNNNFSGEISRGFLNSSSLQALDISSNSLWGQIPNWIGDFSVLSTLSLSRN 476
Query: 441 RLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSY- 499
L+G +P++ C+L L LDLS N I +LP C++ ++ +HL N L GP+ LS
Sbjct: 477 HLDGVVPTSLCKLNELRFLDLSHNKIGPTLPPCANLKKMKFLHLENNELSGPIPHVLSEA 536
Query: 500 ----------NRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549
N+L+ IP W++ L +LR L+L N LE +PLQLC L + ++DLSHN+
Sbjct: 537 TSLVTLNLRDNKLSGPIPHWISLLSKLRVLLLKGNELEDSIPLQLCQLKSVSILDLSHNH 596
Query: 550 LSGQIPHCLYNISFNYREDNHD------------LFDQDPQILYQLPQLQILYTNY--HN 595
LSG IP CL NI+F + D +F Q ++Q ++ ++
Sbjct: 597 LSGTIPSCLDNITFGRKAPLMDGTFFTSAFGGTHVFPDPSSYKNQFAKVQFIHISFGISA 656
Query: 596 HKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG 655
F TK +Y L+ MSGLDLS NKL G IP +IG LS IH+LNLS+N L G
Sbjct: 657 ESEEIEFITKSWSESYMGNILYLMSGLDLSGNKLTGPIPPEIGNLSGIHSLNLSYNQLIG 716
Query: 656 ESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTF 715
P TFS+++++ESLDLS+N L +IPP+++ELN L VF+VA NNLSGKTP+R QF TF
Sbjct: 717 TIPETFSNLQEIESLDLSHNRLTSQIPPQMVELNFLTVFTVAHNNLSGKTPERKFQFATF 776
Query: 716 EEDSYEGNPFLCGQPL 731
E+ SYEGNP LCG PL
Sbjct: 777 EQSSYEGNPLLCGLPL 792
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 327/822 (39%), Positives = 437/822 (53%), Gaps = 101/822 (12%)
Query: 7 GCLEQEGYALLK-------LKHDFFNNHCCQWACV---------------------ECNT 38
GCLE EG+ +L L + FNN +C +CN
Sbjct: 82 GCLENEGFQVLSSKLRELGLSDNRFNNDKSILSCFNGLKVLSSRLKKLENLDLSGNQCND 141
Query: 39 T-----TG--KVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMD 91
T TG + SLDL G + G L+ S + L+ L L N +FN
Sbjct: 142 TIFPALTGFSSLKSLDLSGNQLTASGLRKLD--FLQSLRSLKTLSLKDTNLSQGTFFNSS 199
Query: 92 FC-------TAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNN 144
T+ +FLQ + + +LK LS+ L+GT+ QG CEL L+++++ RNN
Sbjct: 200 TLEELHLDNTSLPINFLQNTRALPALKVLSVGECDLHGTLPAQGWCELKNLKQLDLARNN 259
Query: 145 LSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFF 204
G+LP CL NL+ L LLDVS NQ T NI S PL NL +E L LSNN F++ S++PF
Sbjct: 260 FGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTSMKPFM 319
Query: 205 NHSKLKFF--DGDIYAEIETSHSSLTPKFQLTSISLFGHGDS--GIFPKFLYHQHDLEYV 260
NHS LKFF + + + +L PKFQL +SL ++ P FLY+Q+DL +
Sbjct: 320 NHSSLKFFSSENNRLVTEPAAFDNLIPKFQLVFLSLLKTTEALNVHIPDFLYYQYDLRVL 379
Query: 261 DLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHI 320
DLSH N+T FP+WLL+ N ++++L L + S G LP H + N+ LD+SNN + I
Sbjct: 380 DLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMNSQI 439
Query: 321 PIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLE----------------YLV 364
P +I +LPNL L + N F G IPS GN L +L
Sbjct: 440 PKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLTTLMFLK 499
Query: 365 LSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNNISGNIP 423
LSNN+L GQ+ FN + L+ L L+GN+F G I +L L +S+N SG +P
Sbjct: 500 LSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSGMLP 559
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAF-CQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482
N + L+AI + N +GPIP F C+ HLE LDLS NN+SG +PSC SP I +
Sbjct: 560 RWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQITHL 619
Query: 483 HLSKNMLQGPLL-----------GDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP 531
HLSKN L GPL DL N +IP+W+ L L L+L N +
Sbjct: 620 HLSKNRLSGPLTYGFYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLLRANHFD---- 675
Query: 532 LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDL----FDQDPQI---LYQLP 584
+L ++D+S N LSG +P CL N++F L FD I Y+
Sbjct: 676 ------EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDISRSIEKTYYETM 729
Query: 585 QLQILYTNYHNHKY-------LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQI 637
++ + Y + + FTTK+ Y Y+ + L+ MSG+DLS N +G IP +
Sbjct: 730 GPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSNNNFVGAIPPEF 789
Query: 638 GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697
G LS I +LNLSHNNLTG P TFS++KQ+ESLDLSYNNLNG IPP+L E+ L VFSVA
Sbjct: 790 GNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVA 849
Query: 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNENG 739
NNLSGKTP+R QFGTF+E YEGNPFLCG PL +C+E
Sbjct: 850 HNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEA 891
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 310/736 (42%), Positives = 412/736 (55%), Gaps = 62/736 (8%)
Query: 62 NASLFTS---FQQLELLDLS-------------ILNFKNLEYFNMDFCTAFSNSFLQMSE 105
N S+F+S F L+ LDLS N LE +D ++ +FL
Sbjct: 203 NDSIFSSLTGFSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLD-GSSLPLNFLHNIG 261
Query: 106 LMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVS 165
++ +LK LS LNGT+ QGLC L L+++ + NNL GSLP C NL+ L+LLDVS
Sbjct: 262 VLPALKVLSAGECDLNGTLPAQGLCGLKNLEQLFLSENNLEGSLPDCFKNLSSLQLLDVS 321
Query: 166 FNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGD---IYAEIET 222
NQ NI+SSPL NL +E + LSNNHFQ+ IS++PF NHS L+FF D + E +
Sbjct: 322 RNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTEPMS 381
Query: 223 SHSSLTPKFQLTSISLFGHGDSGI---FPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKN 279
H L PKFQL SL + P FLY+QHDL +DLS + FP+WLL+ N
Sbjct: 382 FHD-LIPKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNN 440
Query: 280 KKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATN 339
+L++L L S FG L H + ++ +D+SNN + G IP I + NL L +A N
Sbjct: 441 TRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKN 500
Query: 340 AFNGSIPSSFGNTWPWGCF----------------YLEYLVLSNNSLQGQLFSKEFNLTK 383
G IPS GN+ G L +L LSNN+L GQL + N ++
Sbjct: 501 GLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQFITLTFLKLSNNNLGGQLPASMVNSSR 560
Query: 384 LKRLNLDGNHFIGDIPKTLSNCSALQG-LYISDNNISGNIPTRLGNLSFLDAIMMPNNRL 442
L L L N+F G I S + L +S+N SG +P NL+ + AI + N
Sbjct: 561 LNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHF 620
Query: 443 EGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLG------- 495
GPIP FC+L L+ LDLS NN+ S+PSC +P +I VHLSKN L GPL
Sbjct: 621 NGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYGFYNSSS 680
Query: 496 ----DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551
DL N +I +W+ L L L+L N +GE +QLC L +L ++D+S N LS
Sbjct: 681 LVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLS 740
Query: 552 GQIPHCLYNISF--NYREDNHDL---FDQDP--QILYQLPQLQILYTNYH---NHKYLTN 601
G +P CL N+SF +Y + + D F P + Y+ Q + L + + + +
Sbjct: 741 GPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEEVIE 800
Query: 602 FTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTF 661
FT K Y Y+ + L MSG+DLS NK G IP ++G LS + LNLSHNNLTG P TF
Sbjct: 801 FTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPATF 860
Query: 662 SHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYE 721
S++KQ+ES DLSYNNL+G IP +L E+ L VFSVA NNLSG+TP+R QFGTF+E SYE
Sbjct: 861 SNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFGTFDESSYE 920
Query: 722 GNPFLCGQPLLKSCNE 737
GNPFLCG PL +C+E
Sbjct: 921 GNPFLCGPPLQNNCSE 936
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124000|ref|XP_002330262.1| predicted protein [Populus trichocarpa] gi|222871718|gb|EEF08849.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 294/694 (42%), Positives = 394/694 (56%), Gaps = 47/694 (6%)
Query: 78 SILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQE 137
+ N LE ++D T+ +FLQ + +LK LS+ LN T+ QG CEL L++
Sbjct: 178 TFFNSSTLEELHLDR-TSLPLNFLQNIGTLPTLKVLSVGQCDLNDTLPAQGWCELKNLEQ 236
Query: 138 VNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQIS 197
+++ NN GSLP CL NL+ L+LLDVS NQ T NI+S L NL IE L LSNN F++
Sbjct: 237 LDLSGNNFGGSLPDCLGNLSSLQLLDVSNNQFTGNIASGSLTNLISIESLSLSNNLFEVP 296
Query: 198 ISLEPFFNHSKLKFF---DGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGI----FPKF 250
IS++PF NHS LKFF + + E + H PKFQL L S P F
Sbjct: 297 ISMKPFMNHSSLKFFYSKNNKLVTEPMSFHD-FIPKFQLVFFRLSNSPTSEAVNIEIPNF 355
Query: 251 LYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLD 310
LY Q+DL +DLSH N+T FP+WLL+ N +L++L L S G L H + ++ LD
Sbjct: 356 LYSQYDLRVLDLSHNNITGMFPSWLLKNNTQLEQLLLNENSFVGTLQLQDHPNPHMTELD 415
Query: 311 VSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLE--------- 361
+SNN + G I + PNL +L +A N F G IPS GN L
Sbjct: 416 ISNNNMHGQILKNSCLIFPNLWILRMAENGFTGCIPSCLGNNLSMAILDLSNNQLSTVKL 475
Query: 362 ------YLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLS-NCSALQGLYIS 414
L LSNN+L GQ+ FN + L L GN+F G I S + L +S
Sbjct: 476 EQPRIWSLQLSNNNLGGQIPISIFNSSGSLFLYLSGNNFWGQIQDFPSPSWEIWVELDLS 535
Query: 415 DNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCS 474
+N SG +P N + + + N+ GPI FC+L LE LDLS NN+SG +PSC
Sbjct: 536 NNQFSGMLPRCFVNSTQMFTFDLSKNQFNGPITEDFCKLDQLEYLDLSENNLSGFIPSCF 595
Query: 475 SPFNIRRVHLSKNMLQGPLLG-----------DLSYNRLNSNIPDWMNRLPQLRYLILAN 523
SP I +VHLSKN L GPL DL N +IP+W+ L L L+L
Sbjct: 596 SPPQITQVHLSKNRLSGPLTNGFYNSSSLITIDLRDNNFTGSIPNWIGNLSSLSVLLLRA 655
Query: 524 NGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQL 583
N +GE P LCWL KL+ +D+S N+LSG +P CL N++F + ++ +L
Sbjct: 656 NHFDGEFPAHLCWLEKLKFLDVSQNHLSGPLPSCLGNLTF----------KESSALVDRL 705
Query: 584 PQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRI 643
L+ + +Y+ + + F TK Y+Y+ + L MSG+DLS N +G IP ++G LS I
Sbjct: 706 QFLRNPFWHYYTDEVI-EFKTKNMYYSYQGEILDLMSGIDLSSNNFLGAIPQELGSLSEI 764
Query: 644 HTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSG 703
H LNLSHNNL G P TFS++KQ+ESLD+S+NNLNG+IP +LIEL L VF+V++NNLSG
Sbjct: 765 HALNLSHNNLAGSIPATFSNLKQIESLDVSHNNLNGRIPAQLIELTFLEVFNVSYNNLSG 824
Query: 704 KTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNE 737
KTP+ QF TF+E SY+GNP LCG PL SC++
Sbjct: 825 KTPEMKYQFATFDESSYKGNPLLCGPPLQNSCDK 858
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 740 | ||||||
| TAIR|locus:2155909 | 908 | RLP56 "AT5G49290" [Arabidopsis | 0.782 | 0.637 | 0.362 | 4.2e-79 | |
| TAIR|locus:2019662 | 965 | RLP15 "AT1G74190" [Arabidopsis | 0.724 | 0.555 | 0.289 | 2.9e-72 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.795 | 0.629 | 0.321 | 7e-65 | |
| TAIR|locus:2037313 | 1000 | RLP13 "AT1G74170" [Arabidopsis | 0.791 | 0.586 | 0.318 | 7.4e-65 | |
| TAIR|locus:2101943 | 891 | RLP45 "AT3G53240" [Arabidopsis | 0.772 | 0.641 | 0.299 | 1.2e-64 | |
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.648 | 0.491 | 0.360 | 6.1e-62 | |
| TAIR|locus:2122239 | 1136 | AT4G36180 [Arabidopsis thalian | 0.766 | 0.499 | 0.268 | 2.5e-42 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.560 | 0.363 | 0.328 | 6.2e-56 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.722 | 0.428 | 0.295 | 9.6e-46 | |
| TAIR|locus:2005498 | 1196 | BRI1 "BRASSINOSTEROID INSENSIT | 0.909 | 0.562 | 0.286 | 5.6e-53 |
| TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 237/653 (36%), Positives = 333/653 (50%)
Query: 127 QGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEE 186
Q CE+ LQE+++ N G LP C NL LR LD+S NQLT NI S +L +E
Sbjct: 214 QVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEY 272
Query: 187 LWLSNNHFQISISLEPFFNHSKLKFF-----DGDIYAEIETSHSSLTPKFQLTSISLFGH 241
L LS+N F+ SL P N +KLK F D + +IE S+ P FQL+ + L
Sbjct: 273 LSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIE---STWQPLFQLSVLVLRLC 329
Query: 242 GDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIH 301
I P FL +Q +L VDLS ++ P WLLE N +L+ L L N S F F +P
Sbjct: 330 SLEKI-PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNS-FTIFQMPTS 387
Query: 302 CHK---------NL---------RVL------DVSNNKLQGHIPIEIGEVLPNLVVLNVA 337
H N+ RVL + SNN QG+ P +GE+ N+ L+++
Sbjct: 388 VHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMY-NISFLDLS 446
Query: 338 TNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGD 397
N +G +P SF ++ CF L L LS+N G ++ N T L L ++ N F G
Sbjct: 447 YNNLSGELPQSFVSS----CFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGK 502
Query: 398 IPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457
I L L L +S+N + G +P L +L+ + + N L G +PS L +
Sbjct: 503 IGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPS-HVSLDN-- 559
Query: 458 ILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLR 517
+L L NN +G +P L + DL N+L+ NIP +++ +
Sbjct: 560 VLFLHNNNFTGPIPD--------------TFLGSIQILDLRNNKLSGNIPQFVDT-QDIS 604
Query: 518 YLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNY--RED--NHDLF 573
+L+L N L G +P LC +K++L+DLS N L+G IP C N+SF +E+ N+ +
Sbjct: 605 FLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYYVA 664
Query: 574 XXXXXXXXXXXXXXXXXTN----YHNHKYL-TNFTTKQRLYTY--EVQ----PLHSMSGL 622
N Y N+ + F TKQR +Y Q L+SM GL
Sbjct: 665 VALESFYLGFYKSTFVVENFRLDYSNYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGL 724
Query: 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIP 682
DLS N+L G IP ++G+L ++ LNLSHN L+ P +FS ++ +ESLDLSYN L G IP
Sbjct: 725 DLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIP 784
Query: 683 PRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSC 735
+L L +LA+F+V++NNLSG P QF TF+E+SY GNP LCG P SC
Sbjct: 785 HQLTNLTSLAIFNVSYNNLSGIIPQG-KQFNTFDENSYLGNPLLCGPPTDTSC 836
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| TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
Identities = 170/587 (28%), Positives = 275/587 (46%)
Query: 16 LLKLKHDFFNNHCCQWACVECNTTTGKVISLDLDGT---RKLGD---------GEGYLNA 63
+L L + FNN + + TT + S ++DG+ ++L D N
Sbjct: 136 ILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRFNG 195
Query: 64 SL----FTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQ-MSELMAXXXXXXXXXX 118
S+ +S ++L+ LDLS F FCT S + EL
Sbjct: 196 SIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELN-NMQELDLSQN 254
Query: 119 XXXGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPL 178
G L L L L+ +++ N L+G++P L +L L L + N + S L
Sbjct: 255 KLVGH-LPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSL 313
Query: 179 MNLTYIEELWLSNNHFQISI----SLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLT 234
NL+ + L L + + + S +P F S + ++ + H L K L
Sbjct: 314 ANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNME---KVPHFLLHQK-DLR 369
Query: 235 SISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL-- 292
+ L + SG P +L + V L NL F + K L +++S
Sbjct: 370 HVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSF-----QIPKSAHNLLFLDVSAND 424
Query: 293 FGP-FPLPIH-CHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFG 350
F FP I +LR L+ S N Q ++P +G + + ++++ N+F+G++P SF
Sbjct: 425 FNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGN-MNGIQYMDLSRNSFHGNLPRSFV 483
Query: 351 NTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQG 410
N GC+ + L LS+N L G++F + N T + L +D N F G I + L + L+
Sbjct: 484 N----GCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLEL 539
Query: 411 LYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSL 470
L +S+NN++G IP+ +G L L A+++ +N L+G IP + L++LDLS N++SG +
Sbjct: 540 LDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVI 599
Query: 471 PSCSSPFNIRRVHLSKNMLQG--P--LLG-----DLSYNRLNSNIPDWMNRLPQLRYLIL 521
P N + L N L G P LL DL NR + IP+++N + + L+L
Sbjct: 600 PPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEILDLRNNRFSGKIPEFIN-IQNISILLL 658
Query: 522 ANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRED 568
N G++P QLC L+ +QL+DLS+N L+G IP CL N SF + ++
Sbjct: 659 RGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKE 705
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| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 7.0e-65, Sum P(2) = 7.0e-65
Identities = 212/660 (32%), Positives = 314/660 (47%)
Query: 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSS--PLM 179
G I + C+L L+++++ N+ G +P CL +L LR+LD+S NQL+ ++ SS L
Sbjct: 235 GPIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLE 294
Query: 180 NLTYIE-------------ELW-LSNNHFQISI---SLE--PFF--NHSKLKFFD---GD 215
+L Y+ L L+N F + + SLE P F KL+ D +
Sbjct: 295 SLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDLSSNN 354
Query: 216 IYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWL 275
+ I T + P+ ++ + + IFP H+L+ D S N+ + FP+ +
Sbjct: 355 LSGNIPTWLLTNNPELEVLQLQ---NNSFTIFP-IPTMVHNLQIFDFSANNIGK-FPDKM 409
Query: 276 LEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLN 335
L RL+ N G FP I KN+ LD+S N G +P +++ L
Sbjct: 410 DHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLK 469
Query: 336 VATNAFNGS-IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHF 394
++ N F+G +P +P L+ L + NN G + N T L+ L++ N
Sbjct: 470 LSHNKFSGRFLPRE--TNFP----SLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGL 523
Query: 395 IGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLR 454
G IP+ L L + IS+N + G IP L + FL + + N+ G +PS
Sbjct: 524 SGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSEL 583
Query: 455 HLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLP 514
+ + L NN +G +P +L+ + DL N+L+ +IP + +
Sbjct: 584 GIYMF-LHNNNFTGPIPD--------------TLLKSVQILDLRNNKLSGSIPQF-DDTQ 627
Query: 515 QLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFN-YREDNHDLF 573
+ L+L N L G +P +LC L+ ++L+DLS N L+G IP CL N+SF +ED L
Sbjct: 628 SINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALN 687
Query: 574 XXXXXXXXXXXXXXXXXT------NYHNHKYLTN---FTTKQRLYTYEVQP------LHS 618
T Y F KQR +Y + L
Sbjct: 688 IPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRL 747
Query: 619 MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
M G+DLS N+L G IP ++G+L ++ TLNLSHN+L G P +FS + VESLDLS+N L
Sbjct: 748 MYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQ 807
Query: 679 GKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNEN 738
G IP L L +LAVF V+ NNLSG P QF TFEE+SY GNP LCG P +SC N
Sbjct: 808 GSIPQLLSSLTSLAVFDVSSNNLSGIIPQG-RQFNTFEEESYLGNPLLCGPPTSRSCETN 866
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| TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 7.4e-65, P = 7.4e-65
Identities = 206/646 (31%), Positives = 309/646 (47%)
Query: 129 LCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188
L L L+ +++ N L+G++P LANL L L + N S L NL+ ++ L
Sbjct: 278 LTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLR 337
Query: 189 LSNNHFQISISLEPFFNHSKLKFFDGDIYA-EIETSHSSLTPKFQLTSISLFGHGDSGIF 247
L + + + E + K + + + +E L + L + L + G F
Sbjct: 338 LDSQSNSLEVEFETSWK-PKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNF 396
Query: 248 PKFLYHQHD-LEYVDLSHLNLTR-EFP----NWL---LEKNKK-----------LKRLSL 287
P +L + LE + L + + T + P N L + NK L L
Sbjct: 397 PSWLLENNTKLEVLLLQNNSFTSFQLPKSAHNLLFLNVSVNKFNHLFLQNFGWILPHLVC 456
Query: 288 VNISL--F-GPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGS 344
VN++ F G P + K++ LD+S+N+ G +P + NL +L ++ N +G
Sbjct: 457 VNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGE 516
Query: 345 I-PSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTL 402
+ P + T W + + NN G + K F +L L L++ N G IP +
Sbjct: 517 VFPEAANFTRLW------VMSMDNNLFTGNI-GKGFRSLPSLNVLDISNNKLTGVIPSWI 569
Query: 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462
L L +S+N + G IPT L N+S+L + + +NRL G IP + H +L L
Sbjct: 570 GERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQ 629
Query: 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILA 522
NN+SG +P +L ++ DL NRL+ N+P+++N + L+L
Sbjct: 630 NNNLSGVIPD--------------TLLLNVIVLDLRNNRLSGNLPEFINT-QNISILLLR 674
Query: 523 NNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISF-------NYREDNHDLFXX 575
N G++P Q C L+ +QL+DLS+N +G IP CL N SF +YR D F
Sbjct: 675 GNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSRFGT 734
Query: 576 XXX---XXXXXXXXXXXXTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE 632
N N + F TK R Y L + G+DLS N+L GE
Sbjct: 735 AKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGE 794
Query: 633 IPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALA 692
IP+++G L + LNLSHNNL+G +FS +K VESLDLS+N L G IP +L ++ +LA
Sbjct: 795 IPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLA 854
Query: 693 VFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNEN 738
VF+V++NNLSG P QF TFE SY GNP LCG+ + SC N
Sbjct: 855 VFNVSYNNLSGIVPQG-RQFNTFETQSYFGNPLLCGKSIDISCASN 899
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| TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
Identities = 193/645 (29%), Positives = 309/645 (47%)
Query: 135 LQEVNIDRNNLSGSLPWCLAN---LTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSN 191
L+ +++ N+LSG +P+ +++ + YL LLD F L S + LT ++ LS+
Sbjct: 204 LRVLDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGL---FSLGLITELTELKVFKLSS 260
Query: 192 NHFQISI-------SLEP-----FFNHSKLKFFDGDIYAE-----IETSHSSLTPKF--- 231
+ I L+ +H L G ++ + I+ S++ L+ F
Sbjct: 261 RSGMLQIVETNVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTW 320
Query: 232 ------QLTSISLFGHGDSGI-FPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKR 284
+L ++ L + + P+ + L+ +DLS N + P + L+
Sbjct: 321 LLENNTELQALLLQNNSFKTLTLPRTMRR---LQILDLSVNNFNNQLPKDVGLILASLRH 377
Query: 285 LSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGS 344
L+L N G P + +N+ +D+S N G +P + +L L ++ N F+G
Sbjct: 378 LNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGP 437
Query: 345 IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSN 404
I + L L++ NN G++ NL L ++L N G IP+ L N
Sbjct: 438 IIRKSSDETS-----LITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGN 492
Query: 405 CSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN 464
L+ L IS+N + G IP L N+ +L + + N L G +P + ILDL N
Sbjct: 493 FF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSS-DYGYILDLHNN 550
Query: 465 NISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN 524
N++GS+P + G L DL N+L+ NIP + + P + ++L N
Sbjct: 551 NLTGSIPD--------------TLWYGLRLLDLRNNKLSGNIPLFRST-PSISVVLLREN 595
Query: 525 GLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYR-EDNHD-------LFXXX 576
L G++P++LC L+ ++++D +HN L+ IP C+ N+SF N D L
Sbjct: 596 NLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNF 655
Query: 577 XXXXXXXXXXXXXXTNYHNHKYLTNFTT------KQRLYTYEVQPLHSMSGLDLSCNKLI 630
++ + Y +F KQR Y L+ M GLDLS N+L
Sbjct: 656 MEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELS 715
Query: 631 GEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNA 690
G IP ++G+L R+ +LNLS N+L+G P +FS+++ +ESLDLS+N L+G IP +L L +
Sbjct: 716 GNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQS 775
Query: 691 LAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSC 735
L VF+V++NNLSG P QF TF E SY GN LCG P +SC
Sbjct: 776 LVVFNVSYNNLSGVIPQG-KQFNTFGEKSYLGNFLLCGSPTKRSC 819
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| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 6.1e-62, P = 6.1e-62
Identities = 196/544 (36%), Positives = 282/544 (51%)
Query: 59 GYLNASL--FTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMAXXXXXXXX 116
GY N S+ FT ++L+ LDLS +F +L LQ +++
Sbjct: 198 GY-NGSIPEFTHLEKLKALDLSANDFSSLVE-------------LQELKVLTNLEVLGLA 243
Query: 117 XXXXXGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSS 176
G I + CE+ L+++++ N G LP CL NL LR+LD+S NQL+ N+ +S
Sbjct: 244 WNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS 303
Query: 177 PLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAE---IETSHSSLTPKFQL 233
+L +E L LS+N+F+ SL P N +KLK F +E +ET S+ PKFQL
Sbjct: 304 -FNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETE-SNWLPKFQL 361
Query: 234 TSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLF 293
T ++ G P FL +Q +L VDLS L+ + P WLLE N +LK L L N S F
Sbjct: 362 T-VAALPFCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNS-F 419
Query: 294 GPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFG--- 350
F +P HK L+VLD S N + G +P IG VLP L+ +N + N F G++PSS G
Sbjct: 420 TIFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMN 478
Query: 351 ---------NTW----P----WGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNH 393
N + P GCF L L LS+NS G + + LT L L + N
Sbjct: 479 DISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNL 538
Query: 394 FIGDIP---KTLSNCSALQGLYISDNNISGNIPTRLG-NLSFLDAIMMPNNRLEGPIPSA 449
F G+I +TL N S S+N ++G I + + + S L +++ NN LEG +P +
Sbjct: 539 FTGEIGVGLRTLVNLSIFDA---SNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPS 595
Query: 450 FCQLRHLEILDLSRNNISGSLPSC--SSPFNIRRVHLSKNMLQGPL---------LGDLS 498
+ HL LDLS N +SG LPS +S + I+ + L N GPL + DL
Sbjct: 596 LLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIK-IFLHNNSFTGPLPVTLLENAYILDLR 654
Query: 499 YNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCL 558
N+L+ +IP ++N + L+ NN L G +P +LC L ++L+DLS N L+G IP CL
Sbjct: 655 NNKLSGSIPQFVNTGKMITLLLRGNN-LTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCL 713
Query: 559 YNIS 562
++S
Sbjct: 714 NHLS 717
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| TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 163/606 (26%), Positives = 265/606 (43%)
Query: 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNL 181
GTI L L V + N+LSG LP + NLT L + +V+ N+L+ I +L
Sbjct: 106 GTI-PTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLPSSL 164
Query: 182 TYIEELWLSNNHF--QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTP-KFQLTSISL 238
+++ +S+N F QI L L + EI S +L ++ +L
Sbjct: 165 QFLD---ISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNL 221
Query: 239 FGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPL 298
G P + + L ++ S + P KL+ LSL N + G P
Sbjct: 222 L----QGTLPSAISNCSSLVHLSASENEIGGVIPA-AYGALPKLEVLSLSNNNFSGTVPF 276
Query: 299 PIHCHKNLRVLDVSNNKLQGHI-PIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357
+ C+ +L ++ + N + P L VL++ N +G P W
Sbjct: 277 SLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFP-----LWLTNI 331
Query: 358 FYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNN 417
L+ L +S N G++ NL +L+ L L N G+IP + C +L L N+
Sbjct: 332 LSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNS 391
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP-SCSSP 476
+ G IP LG + L + + N G +PS+ L+ LE L+L NN++GS P +
Sbjct: 392 LKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMAL 451
Query: 477 FNIRRVHLSKNMLQG--PL----LGDLSYNRLNSN-----IPDWMNRLPQLRYLILANNG 525
++ + LS N G P+ L +LS+ L+ N IP + L +L L L+
Sbjct: 452 TSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQN 511
Query: 526 LEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYN-ISFNYREDNHDLFXXXXXXXXXXX 584
+ GE+P++L L +Q++ L NN SG +P + +S Y + + F
Sbjct: 512 MSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFL 571
Query: 585 XXXXXXTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIH 644
+ NH ++ E+ ++ L+L N+L+G IP + L R+
Sbjct: 572 RLLVSLSLSDNH--ISGSIPP------EIGNCSALEVLELRSNRLMGHIPADLSRLPRLK 623
Query: 645 TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGK 704
L+L NNL+GE P S + SL L +N+L+G IP L+ L ++ NNL+G+
Sbjct: 624 VLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGE 683
Query: 705 TPDRVA 710
P +A
Sbjct: 684 IPASLA 689
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| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 6.2e-56, Sum P(2) = 6.2e-56
Identities = 146/445 (32%), Positives = 231/445 (51%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
LQ++ I NL+G+LP L + L++LD+S N L +I S L L +E L L++N
Sbjct: 107 LQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWS-LSKLRNLETLILNSN-- 163
Query: 195 QISISLEPFFNH-SKLK---FFDGDIYAEIETSHSSLTPKFQLTSISLFGHGD-SGIFPK 249
Q++ + P + SKLK FD + I T L+ L I + G+ + SG P
Sbjct: 164 QLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSG---LEVIRIGGNKEISGQIPS 220
Query: 250 FLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVL 309
+ +L + L+ +++ P+ L K KKL+ LS+ + G P + L L
Sbjct: 221 EIGDCSNLTVLGLAETSVSGNLPS-SLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDL 279
Query: 310 DVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNS 369
+ N L G IP EIG+ L L L + N+ G IP GN C L+ + LS N
Sbjct: 280 FLYENSLSGSIPREIGQ-LTKLEQLFLWQNSLVGGIPEEIGN-----CSNLKMIDLSLNL 333
Query: 370 LQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNL 429
L G + S L+ L+ + N F G IP T+SNCS+L L + N ISG IP+ LG L
Sbjct: 334 LSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTL 393
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF-NIRRVHLSKNM 488
+ L +N+LEG IP L+ LDLSRN+++G++PS N+ ++ L N
Sbjct: 394 TKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNS 453
Query: 489 LQGPL---LGD--------LSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWL 537
L G + +G+ L +NR+ IP + L ++ +L ++N L G++P ++
Sbjct: 454 LSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSC 513
Query: 538 NKLQLVDLSHNNLSGQIPHCLYNIS 562
++LQ++DLS+N+L G +P+ + ++S
Sbjct: 514 SELQMIDLSNNSLEGSLPNPVSSLS 538
|
|
| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 9.6e-46, P = 9.6e-46
Identities = 171/578 (29%), Positives = 272/578 (47%)
Query: 124 ILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTY 183
++ + L +L LQ +++ NNL+G +P N++ L L ++ N L+ ++ S N T
Sbjct: 278 LIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTN 337
Query: 184 IEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGD 243
+E+L LS I +E LK D + + +L +LT + L +
Sbjct: 338 LEQLVLSGTQLSGEIPVE-LSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTL 396
Query: 244 SGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCH 303
G + + +L+++ L H NL + P + +KL+ L L G P I
Sbjct: 397 EGTLSPSISNLTNLQWLVLYHNNLEGKLPKEI-SALRKLEVLFLYENRFSGEIPQEIGNC 455
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGN------------ 351
+L+++D+ N +G IP IG L L +L++ N G +P+S GN
Sbjct: 456 TSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADN 514
Query: 352 ----TWP--WGCFY-LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSN 404
+ P +G LE L+L NNSLQG L +L L R+NL N G I L
Sbjct: 515 QLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCG 573
Query: 405 CSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN 464
S+ +++N IP LGN LD + + N+L G IP ++R L +LD+S N
Sbjct: 574 SSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSN 633
Query: 465 NISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN 524
++G++P ++ V L K + DL+ N L+ IP W+ +L QL L L++N
Sbjct: 634 ALTGTIP-------LQLV-LCKKLTHI----DLNNNFLSGPIPPWLGKLSQLGELKLSSN 681
Query: 525 GLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNI-SFNYREDNHDLFXXXXXXXXXX 583
+P +L KL ++ L N+L+G IP + N+ + N + + F
Sbjct: 682 QFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGK 741
Query: 584 XXXXXXXTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRI 643
Y + T + + ++Q L S LDLS N G+IP IG LS++
Sbjct: 742 LSKL-----YELRLSRNSLTGEIPVEIGQLQDLQS--ALDLSYNNFTGDIPSTIGTLSKL 794
Query: 644 HTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681
TL+LSHN LTGE P + MK + L++S+NNL GK+
Sbjct: 795 ETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL 832
|
|
| TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 5.6e-53, P = 5.6e-53
Identities = 213/744 (28%), Positives = 338/744 (45%)
Query: 25 NNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLF--TSFQQLEL----LDLS 78
N + C + V C KV S+DL ++ L G +++SL T + L L ++ S
Sbjct: 58 NKNPCTFDGVTCRDD--KVTSIDLS-SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS 114
Query: 79 ILNFK-NLEYFNMDFCTAFSNSFL-QMSELMAXXXXXXXXXXXXXGTILD-----QGLCE 131
+ FK + ++D NS ++ L + LD G +
Sbjct: 115 VSGFKCSASLTSLDLSR---NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 171
Query: 132 LVYLQEVNIDRNNLSGS--LPWCLAN-LTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188
L L+ +++ N++SG+ + W L++ L+ L +S N+++ ++ S +NL +++
Sbjct: 172 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD--- 228
Query: 189 LSNNHFQISISLEPFFNH-SKLKFFD--GD-IYAEIETSHSSLTPKFQLTSISLFGHGDS 244
+S+N+F I PF S L+ D G+ + + + S+ T + +L +IS +
Sbjct: 229 VSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNIS--SNQFV 282
Query: 245 GIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHK 304
G P L+Y+ L+ T E P++L L L L +G P
Sbjct: 283 GPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 340
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV 364
L L +S+N G +P++ + L VL+++ N F+G +P S N L L
Sbjct: 341 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL----SASLLTLD 396
Query: 365 LSNNSLQGQLFSKEFNLTK--LKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNI 422
LS+N+ G + K L+ L L N F G IP TLSNCS L L++S N +SG I
Sbjct: 397 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 456
Query: 423 PTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482
P+ LG+LS L + + N LEG IP ++ LE L L N+++G +PS S N +
Sbjct: 457 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNL 514
Query: 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542
N + LS NRL IP W+ RL L L L+NN G +P +L L
Sbjct: 515 ----NWIS------LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 564
Query: 543 VDLSHNNLSGQIPHCLYN----ISFNYREDNHDLFXXXXXXXXXXXXXXXXXTNYH-NHK 597
+DL+ N +G IP ++ I+ N+ ++ +
Sbjct: 565 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 624
Query: 598 YLTNFTTKQ------RLYTYEVQPLHSMSG----LDLSCNKLIGEIPLQIGELSRIHTLN 647
L +T+ R+Y P +G LD+S N L G IP +IG + + LN
Sbjct: 625 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 684
Query: 648 LSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPD 707
L HN+++G P ++ + LDLS N L+G+IP + L L ++ NNLSG P+
Sbjct: 685 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 744
Query: 708 RVAQFGTFEEDSYEGNPFLCGQPL 731
+ QF TF + NP LCG PL
Sbjct: 745 -MGQFETFPPAKFLNNPGLCGYPL 767
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 740 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-55 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-50 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-41 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-40 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-08 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 5e-55
Identities = 178/606 (29%), Positives = 267/606 (44%), Gaps = 97/606 (16%)
Query: 144 NLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPF 203
N+SG + + L Y++ +++S NQL+ I + + L LSNN+F SI
Sbjct: 80 NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI 139
Query: 204 FNHSKLKF----FDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEY 259
N L G+I +I G F L+
Sbjct: 140 PNLETLDLSNNMLSGEIPNDI------------------------GSF-------SSLKV 168
Query: 260 VDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGH 319
+DL L + PN L L+ L+L + L G P + K+L+ + + N L G
Sbjct: 169 LDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227
Query: 320 IPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF 379
IP EIG L +L L++ N G IPSS GN L+YL L N L G + F
Sbjct: 228 IPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKN-----LQYLFLYQNKLSGPIPPSIF 281
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
+L KL L+L N G+IP+ + L+ L++ NN +G IP L +L L + + +
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341
Query: 440 NRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS--CSSPFNIRRVHLSKNMLQGPLLGDL 497
N+ G IP + +L +LDLS NN++G +P CSS +L K +L
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG------NLFKLILFS------ 389
Query: 498 SYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHC 557
N L IP + LR + L +N GE+P + L + +D+S+NNL G+I
Sbjct: 390 --NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--- 444
Query: 558 LYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHN----------HKYLTNFTTKQR 607
N R+ + +P LQ+L + K L N +
Sbjct: 445 ------NSRK-------------WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485
Query: 608 LYTYEVQPLHSMS-----GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFS 662
++ P S L LS NKL GEIP ++ ++ +L+LSHN L+G+ P +FS
Sbjct: 486 QFS-GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544
Query: 663 HMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEG 722
M + LDLS N L+G+IP L + +L +++ N+L G P A F + G
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA-FLAINASAVAG 603
Query: 723 NPFLCG 728
N LCG
Sbjct: 604 NIDLCG 609
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 3e-50
Identities = 152/487 (31%), Positives = 240/487 (49%), Gaps = 44/487 (9%)
Query: 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNIS 291
++ SI L G SG ++ ++ ++LS+ L+ P+ + + L+ L+L N +
Sbjct: 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129
Query: 292 LFGPFP---LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSS 348
G P +P NL LD+SNN L G IP +IG +L VL++ N G IP+S
Sbjct: 130 FTGSIPRGSIP-----NLETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNS 183
Query: 349 FGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSAL 408
N LE+L L++N L GQ+ + + LK + L N+ G+IP + ++L
Sbjct: 184 LTNLTS-----LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238
Query: 409 QGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG 468
L + NN++G IP+ LGNL L + + N+L GPIP + L+ L LDLS N++SG
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298
Query: 469 SLPSCSSPF-NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLE 527
+P N+ +HL N G IP + LP+L+ L L +N
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTG-------------KIPVALTSLPRLQVLQLWSNKFS 345
Query: 528 GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS--FNYREDNHDLFDQDPQILYQLPQ 585
GE+P L N L ++DLS NNL+G+IP L + F ++ L + P+ L
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405
Query: 586 LQ--ILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRI 643
L+ L N + + + FT +Y LD+S N L G I + ++ +
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYF-----------LDISNNNLQGRINSRKWDMPSL 454
Query: 644 HTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSG 703
L+L+ N G P +F K++E+LDLS N +G +P +L L+ L ++ N LSG
Sbjct: 455 QMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513
Query: 704 KTPDRVA 710
+ PD ++
Sbjct: 514 EIPDELS 520
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 6e-41
Identities = 158/559 (28%), Positives = 268/559 (47%), Gaps = 60/559 (10%)
Query: 29 CQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFK----- 83
C W + CN ++ +V+S+DL G + G +++++F ++ ++LS
Sbjct: 58 CLWQGITCNNSS-RVVSIDLSGK----NISGKISSAIF-RLPYIQTINLSNNQLSGPIPD 111
Query: 84 -------NLEYFNM---DFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTI-LDQGLCEL 132
+L Y N+ +F + + +L+ L LSN+ L+G I D G
Sbjct: 112 DIFTTSSSLRYLNLSNNNFTGSIPRGSI------PNLETLDLSNNMLSGEIPNDIGS--F 163
Query: 133 VYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNN 192
L+ +++ N L G +P L NLT L L ++ NQL I L + ++ ++L N
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN 222
Query: 193 HFQISISLE----PFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFP 248
+ I E NH L + ++ I +S +L L + L+ + SG P
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVY--NNLTGPIPSSLGNLK---NLQYLFLYQNKLSGPIP 277
Query: 249 KFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRV 308
++ L +DLS +L+ E P L+ + + L+ L L + + G P+ + L+V
Sbjct: 278 PSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336
Query: 309 LDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN 368
L + +NK G IP +G+ NL VL+++TN G IP ++ L L+L +N
Sbjct: 337 LQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSG-----NLFKLILFSN 390
Query: 369 SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGN 428
SL+G++ L+R+ L N F G++P + + L IS+NN+ G I +R +
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450
Query: 429 LSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFN-IRRVHLSKN 487
+ L + + N+ G +P +F R LE LDLSRN SG++P + + ++ LS+N
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509
Query: 488 MLQGPLLG-----------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW 536
L G + DLS+N+L+ IP + +P L L L+ N L GE+P L
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569
Query: 537 LNKLQLVDLSHNNLSGQIP 555
+ L V++SHN+L G +P
Sbjct: 570 VESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 3e-40
Identities = 140/480 (29%), Positives = 208/480 (43%), Gaps = 91/480 (18%)
Query: 262 LSHLNLTREFPNW---LLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQG 318
LS+ N + + W + ++ + L ++ G I ++ +++SNN+L G
Sbjct: 48 LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107
Query: 319 HIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE 378
IP +I +L LN++ N F GSIP LE L LSNN L G++ +
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS-------IPNLETLDLSNNMLSGEIPNDI 160
Query: 379 FNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438
+ + LK L+L GN +G IP +L+N ++L+ L ++ N + G IP LG + L I +
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLS 498
N L G IP L L LDL NN++G +P LG+L
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP--------------------SSLGNLK 260
Query: 499 YNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCL 558
L+YL L N L G +P + L KL +DLS N+LSG+IP +
Sbjct: 261 ----------------NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304
Query: 559 YNISFNYREDNHDLFDQD-----PQILYQLPQLQIL--YTNYHNHKYLTNFTTKQRLYTY 611
I E H LF + P L LP+LQ+L ++N + + N L
Sbjct: 305 --IQLQNLEILH-LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV- 360
Query: 612 EVQPLHSMSGLDLSCNKLIG------------------------EIPLQIGELSRIHTLN 647
LDLS N L G EIP +G + +
Sbjct: 361 ----------LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410
Query: 648 LSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPD 707
L N+ +GE P F+ + V LD+S NNL G+I R ++ +L + S+A N G PD
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 5e-16
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 619 MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
+ GL L L G IP I +L + ++NLS N++ G P + + +E LDLSYN+ N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 679 GKIPPRLIELNALAVFSVAFNNLSGKTPDRV-------AQFGTFEEDSYEGNPFLCGQPL 731
G IP L +L +L + ++ N+LSG+ P + A F ++ N LCG P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF------NFTDNAGLCGIPG 533
Query: 732 LKSC 735
L++C
Sbjct: 534 LRAC 537
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-12
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 387 LNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPI 446
L LD G IP +S LQ + +S N+I GNIP LG+++ L+ + + N G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 447 PSAFCQLRHLEILDLSRNNISGSLPS 472
P + QL L IL+L+ N++SG +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 3e-10
Identities = 32/94 (34%), Positives = 56/94 (59%)
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD 415
G ++++ L L N L+G + + L L+ +NL GN G+IP +L + ++L+ L +S
Sbjct: 416 GKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475
Query: 416 NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSA 449
N+ +G+IP LG L+ L + + N L G +P+A
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 42/147 (28%)
Query: 431 FLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ 490
F+D + + N L G IP+ +LRHL+ ++LS N+I G++P S +
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP------------PSLGSIT 466
Query: 491 GPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550
+ DLSYN N +IP+ + +L LR L L NG N+L
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNL--NG----------------------NSL 502
Query: 551 SGQIPHC-----LYNISFNYREDNHDL 572
SG++P L+ SFN+ DN L
Sbjct: 503 SGRVPAALGGRLLHRASFNF-TDNAGL 528
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 309 LDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN 368
L + N L+G IP +I + L +L +N++ N+ G+IP S G+ LE L LS N
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITS-----LEVLDLSYN 476
Query: 369 SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTL 402
S G + LT L+ LNL+GN G +P L
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-05
Identities = 26/56 (46%), Positives = 31/56 (55%)
Query: 622 LDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677
LDLS N+L L + L+LS NNLT SP FS + + SLDLS NNL
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 260 VDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGH 319
+ L + L PN + K + L+ ++L S+ G P + +L VLD+S N G
Sbjct: 423 LGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 320 IPIEIGEVLPNLVVLNVATNAFNGSIPSSFG 350
IP +G+ L +L +LN+ N+ +G +P++ G
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 113 LSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTEN 172
L L N L G I + + +L +LQ +N+ N++ G++P L ++T L +LD+S+N +
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 173 ISSSPLMNLTYIEELWLSNN 192
I S L LT + L L+ N
Sbjct: 482 IPES-LGQLTSLRILNLNGN 500
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 55/140 (39%)
Query: 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQ 578
L L N GL G +P + L LQ ++LS N++ G I P
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI----------------------PP 460
Query: 579 ILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIG 638
L + L++L DLS N G IP +G
Sbjct: 461 SLGSITSLEVL---------------------------------DLSYNSFNGSIPESLG 487
Query: 639 ELSRIHTLNLSHNNLTGESP 658
+L+ + LNL+ N+L+G P
Sbjct: 488 QLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.004
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
L+ L LSNN L L LK L+L GN+ P+ S +L+ L +S NN+
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 740 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.89 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.83 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.79 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.74 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.73 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.71 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.68 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.62 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.55 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.31 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.27 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.1 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.1 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.09 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.07 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.05 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.04 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.03 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.02 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.01 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.0 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.0 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.93 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.86 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.86 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.8 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.78 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.7 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.69 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.68 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.53 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.49 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.39 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.23 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.08 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.01 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.0 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.99 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.95 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.95 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.86 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.75 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.75 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.75 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.68 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.67 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.54 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.11 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.97 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.95 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.47 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 96.25 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.09 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.04 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.92 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.18 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.07 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.9 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 92.28 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 91.23 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.1 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.1 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 89.37 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.31 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.31 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.26 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 85.24 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 83.33 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 81.16 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-61 Score=568.08 Aligned_cols=572 Identities=33% Similarity=0.479 Sum_probs=419.1
Q ss_pred cHHHHHHHHHHhhc----------CC-CCCCccccceEecCCCCceEEEECCCCCCCCCCCccccccccccccccceeeC
Q 045323 9 LEQEGYALLKLKHD----------FF-NNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDL 77 (740)
Q Consensus 9 ~~~~~~~~~~~~~~----------~~-~~~~c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldl 77 (740)
.++|+.|+++||++ |. .++||.|.|+.|.. .++|+.+|++++.+.. ..+..|..+++|++||+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~-----~~~~~~~~l~~L~~L~L 100 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISG-----KISSAIFRLPYIQTINL 100 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccc-----cCChHHhCCCCCCEEEC
Confidence 45788899999876 65 67899999999986 5699999999987732 22445666777666666
Q ss_pred CCCCCCCCcEEeCCCCCCcCcccchhc-ccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCC
Q 045323 78 SILNFKNLEYFNMDFCTAFSNSFLQMS-ELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANL 156 (740)
Q Consensus 78 s~~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 156 (740)
+++++ .+.+|..+ ..+++|++|++++|.+++.+|. ..+++|++|++++|.+++..|..++++
T Consensus 101 s~n~~--------------~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 101 SNNQL--------------SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred CCCcc--------------CCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcC
Confidence 65543 34445443 3678888888888887766653 457778888888888877777778888
Q ss_pred CCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEE
Q 045323 157 TYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSI 236 (740)
Q Consensus 157 ~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 236 (740)
++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~---------------------------------------- 202 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVG---------------------------------------- 202 (968)
T ss_pred CCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcC----------------------------------------
Confidence 8888888888877766666 67777788888877776653
Q ss_pred EecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcc
Q 045323 237 SLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKL 316 (740)
Q Consensus 237 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 316 (740)
.+|..++++++|++|++++|++.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 203 ---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 203 ---------QIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred ---------cCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 234445555555555555555555555543 4555555555555555555555555566666666666666
Q ss_pred cccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCccee
Q 045323 317 QGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIG 396 (740)
Q Consensus 317 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 396 (740)
.+.+|..+.. +++|+.|++++|.+.+..|..+..+. +|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 273 ~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 273 SGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQ-----NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred eccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCC-----CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 5555555544 56666666666666655555555443 56666666666666666666666667777777666666
Q ss_pred cCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCC-C
Q 045323 397 DIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCS-S 475 (740)
Q Consensus 397 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~ 475 (740)
..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|... .
T Consensus 347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 666666666667777777776666666666666677777777777666666666677777777777777665555433 3
Q ss_pred CCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCC
Q 045323 476 PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555 (740)
Q Consensus 476 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 555 (740)
++.|+.|++++|.+++ .++..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++.+.+|
T Consensus 427 l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 427 LPLVYFLDISNNNLQG-------------RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred CCCCCEEECcCCcccC-------------ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccC
Confidence 6667777776666543 445556678899999999999887777655 46899999999999987777
Q ss_pred ccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChh
Q 045323 556 HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPL 635 (740)
Q Consensus 556 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 635 (740)
..+.++ ++|+.|++++|++.+.+|.
T Consensus 493 ~~~~~l-------------------------------------------------------~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 493 RKLGSL-------------------------------------------------------SELMQLKLSENKLSGEIPD 517 (968)
T ss_pred hhhhhh-------------------------------------------------------hccCEEECcCCcceeeCCh
Confidence 654433 3889999999999999999
Q ss_pred hhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCc
Q 045323 636 QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTF 715 (740)
Q Consensus 636 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l 715 (740)
.+..+++|++|+|++|.+++.+|..|+.+++|+.|+|++|++++.+|..+..+++|+.|++++|++.+.+|.. +.+.++
T Consensus 518 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~ 596 (968)
T PLN00113 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAI 596 (968)
T ss_pred HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 788888
Q ss_pred cccccccCCCCCCcC
Q 045323 716 EEDSYEGNPFLCGQP 730 (740)
Q Consensus 716 ~~l~l~~Np~~c~~~ 730 (740)
...++.|||..|+-.
T Consensus 597 ~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 597 NASAVAGNIDLCGGD 611 (968)
T ss_pred ChhhhcCCccccCCc
Confidence 999999999999754
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-54 Score=509.85 Aligned_cols=517 Identities=32% Similarity=0.468 Sum_probs=427.8
Q ss_pred CCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccC-cCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCL-ANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 109 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
+++.|++++|.+.+.++. .|..+++|++|+|++|.+.+.+|..+ ..+++|++|++++|.+++.+|. ..+++|++|
T Consensus 70 ~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 70 RVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred cEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 455666666655544443 55566666666666666554444433 3556666666666665554443 335556666
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
++++|.+.+.++. .+. .+.+|+.|++++|.+.+.+|..+.++++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~-~~~------------------------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 146 DLSNNMLSGEIPN-DIG------------------------SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred ECcCCcccccCCh-HHh------------------------cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 6666655432221 111 222555555555555566788889999999999999999
Q ss_pred CCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCC
Q 045323 268 TREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPS 347 (740)
Q Consensus 268 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 347 (740)
.+.+|..+ ..+++|++|++++|.+....|..+..+++|++|++++|.+++.+|..+.. +++|+.|++++|.+.+..|.
T Consensus 201 ~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 201 VGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred cCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCch
Confidence 98888875 78999999999999998888888999999999999999998888887776 89999999999999888888
Q ss_pred CccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCC
Q 045323 348 SFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLG 427 (740)
Q Consensus 348 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~ 427 (740)
.+..+. +|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.
T Consensus 279 ~l~~l~-----~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 279 SIFSLQ-----KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred hHhhcc-----CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 877655 799999999999988888888999999999999999988888889999999999999999988899999
Q ss_pred CCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCC
Q 045323 428 NLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNI 506 (740)
Q Consensus 428 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 506 (740)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|.. ..+++|+.|++++|++++ .+
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-------------~~ 420 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-------------EL 420 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-------------EC
Confidence 9999999999999999888999999999999999999998777764 448899999999988763 56
Q ss_pred CcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhh
Q 045323 507 PDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQL 586 (740)
Q Consensus 507 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L 586 (740)
|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+.
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--------------------------- 473 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--------------------------- 473 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---------------------------
Confidence 77788899999999999999988888888899999999999998876664321
Q ss_pred HHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCC
Q 045323 587 QILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQ 666 (740)
Q Consensus 587 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 666 (740)
.++|+.||+++|++.+..|..+..+++|+.|+|++|++++.+|..+..+++
T Consensus 474 -----------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 524 (968)
T PLN00113 474 -----------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524 (968)
T ss_pred -----------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccC
Confidence 137999999999999999999999999999999999999999999999999
Q ss_pred CCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 667 VESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 667 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.+++++|++.+..|
T Consensus 525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999999999999999999999999999999999999999999999999999999988665
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=312.57 Aligned_cols=375 Identities=22% Similarity=0.238 Sum_probs=264.8
Q ss_pred CCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEec
Q 045323 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNV 336 (740)
Q Consensus 257 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l 336 (740)
-+.|++++|.+...-+ .+|.++++|+++++..|.++ .+|.......+|+.|++.+|.|+ .+...-...++.|+.||+
T Consensus 80 t~~LdlsnNkl~~id~-~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDF-EFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccccCcH-HHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 4557777777663333 33456777777777766654 33433334445777777777666 444433344667777777
Q ss_pred cCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCc
Q 045323 337 ATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416 (740)
Q Consensus 337 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 416 (740)
+.|.++......|..-. ++++|++++|.|+......|.++.+|..|.|+.|.++...+..|..+++|+.|++..|
T Consensus 157 SrN~is~i~~~sfp~~~-----ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKV-----NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhchhhcccCCCCCCCC-----CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 77766643333443322 5666777777666666666666666666666666666555556666666666666666
Q ss_pred ccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccc
Q 045323 417 NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGD 496 (740)
Q Consensus 417 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 496 (740)
+|.-.-...|..+++|+.|.+..|.+......+|..+.++++|+++.|++..
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~---------------------------- 283 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA---------------------------- 283 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh----------------------------
Confidence 6653334455666666666666666655555556666666666666655541
Q ss_pred cCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCC
Q 045323 497 LSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQD 576 (740)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~ 576 (740)
.-..++.++++|+.|++|+|.|...-+..++.+++|+.|+++.|.++...+..|..
T Consensus 284 --------vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~---------------- 339 (873)
T KOG4194|consen 284 --------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV---------------- 339 (873)
T ss_pred --------hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH----------------
Confidence 22345667888888999999888777777888889999999999887443333322
Q ss_pred chhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCccc
Q 045323 577 PQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE 656 (740)
Q Consensus 577 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 656 (740)
++.|++|++++|.+.......|..+++|++|||++|.+...
T Consensus 340 ---------------------------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 340 ---------------------------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred ---------------------------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 23777888999998877777799999999999999998876
Q ss_pred CC---ccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 657 SP---VTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 657 ~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
+. ..|..+++|+.|+|.+|++..+....|..+..|+.|||.+|.+..+.|..|..+ .|.+|-+..-.++|||.+
T Consensus 381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence 53 467889999999999999997667899999999999999999999999999999 999999999999999985
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=300.62 Aligned_cols=371 Identities=25% Similarity=0.241 Sum_probs=322.9
Q ss_pred cccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEc
Q 045323 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDV 311 (740)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l 311 (740)
.-+.|++++|.+..+-+..+.++++|+++++.+|.++ .+|... .....++.|+|.+|.+.....+.++.++.|+.||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 6778999999999999999999999999999999998 788743 44566999999999998888888999999999999
Q ss_pred cCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCC
Q 045323 312 SNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDG 391 (740)
Q Consensus 312 ~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 391 (740)
+.|.|+ .+|...+..-+++++|++++|.++......|..+. +|.+|.++.|+++...+..|.++++|+.|+|..
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-----sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-----SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccc-----hheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 999998 77776666557999999999999988888888766 899999999999988888999999999999999
Q ss_pred CcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCC
Q 045323 392 NHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP 471 (740)
Q Consensus 392 n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 471 (740)
|.+.-.---.|.++++|+.|.+..|.|......+|..+.++++|+|+.|++.......+.++++|+.|++++|.|...-+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 99876556678999999999999999998878899999999999999999998888899999999999999999987766
Q ss_pred CCCC-CCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcC
Q 045323 472 SCSS-PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550 (740)
Q Consensus 472 ~~~~-~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 550 (740)
+.+. +++|++|+++.|+|+. .-+..|..+..|++|+++.|+++..-..+|..+++|+.||++.|.+
T Consensus 311 d~WsftqkL~~LdLs~N~i~~-------------l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITR-------------LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred chhhhcccceeEecccccccc-------------CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 6555 8999999999988762 3456678889999999999999988788899999999999999988
Q ss_pred cCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccc
Q 045323 551 SGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI 630 (740)
Q Consensus 551 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 630 (740)
+..+-+ ....+..+++|+.|++.+|++.
T Consensus 378 s~~IED----------------------------------------------------aa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 378 SWCIED----------------------------------------------------AAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred EEEEec----------------------------------------------------chhhhccchhhhheeecCceee
Confidence 643321 0112344668888999999999
Q ss_pred ccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCc
Q 045323 631 GEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676 (740)
Q Consensus 631 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~ 676 (740)
.+...+|.++..|++|||.+|.|..+.|.+|..+ .|++|.+..-.
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 7777889999999999999999999999999998 89988776443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=309.61 Aligned_cols=465 Identities=28% Similarity=0.391 Sum_probs=247.2
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
..|..+.+++|.+. .+.+ ++.++..|.+|++++|+++ ..|.+++.+..++.++.++|+++. +|+ .+..+.+++.+
T Consensus 45 v~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~-~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPE-QIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchh-hccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccH-HHhhhhhhhhh
Confidence 34666777777765 3333 6777777777777777776 466667777777777777777754 666 67777777777
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
+.+.|.+.. .++.++.+..+..++..+|++
T Consensus 120 ~~s~n~~~e--------------------------------------------------l~~~i~~~~~l~dl~~~~N~i 149 (565)
T KOG0472|consen 120 DCSSNELKE--------------------------------------------------LPDSIGRLLDLEDLDATNNQI 149 (565)
T ss_pred hccccceee--------------------------------------------------cCchHHHHhhhhhhhcccccc
Confidence 777776541 223333444455555555555
Q ss_pred CCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCC
Q 045323 268 TREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPS 347 (740)
Q Consensus 268 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 347 (740)
. ..|..+ ..+.++..+++.++.+....+..+. ++.|++||+..|.++ .+|..++. +.+|..|++..|++. ..|
T Consensus 150 ~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP- 222 (565)
T KOG0472|consen 150 S-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP- 222 (565)
T ss_pred c-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-
Confidence 4 344443 2445555555555555433333333 556666666666655 66666655 566666666666665 344
Q ss_pred CccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCC
Q 045323 348 SFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLG 427 (740)
Q Consensus 348 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~ 427 (740)
.|.. |..|.++.++.|.+.-.......+++++..||+.+|++. ..|..+..+.+|++||+++|.|+ ..|..++
T Consensus 223 ef~g-----cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 223 EFPG-----CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred CCCc-----cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc
Confidence 3332 345666666666666444444446666667777766665 44555566666667777777666 5566666
Q ss_pred CCCCCCEEeCCCCcCcCCchhhhcC-----CCCCCE----EECCCCc---------CcccCCCCCCCCcccEEEcCCCcc
Q 045323 428 NLSFLDAIMMPNNRLEGPIPSAFCQ-----LRHLEI----LDLSRNN---------ISGSLPSCSSPFNIRRVHLSKNML 489 (740)
Q Consensus 428 ~l~~L~~L~l~~n~~~~~~~~~l~~-----l~~L~~----L~l~~n~---------~~~~~~~~~~~~~L~~L~l~~n~i 489 (740)
++ .|+.|.+.+|.+..+-.+.+.. ++.|+. =-++... ..+.+++.....+.+.|++++-++
T Consensus 296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL 374 (565)
T ss_pred cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence 66 6666666666653211111100 000100 0001000 112223333344555666655555
Q ss_pred cCcCc-------------cccCCCcCCCCCCcccCCCCCCcEE-ecccCcccccCCccccCCCCCCEEEccCCcCcCCCC
Q 045323 490 QGPLL-------------GDLSYNRLNSNIPDWMNRLPQLRYL-ILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555 (740)
Q Consensus 490 ~~~~~-------------~~l~~~~~~~~~~~~~~~~~~L~~L-~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 555 (740)
+.... .+++.|++. .+|..+..+..+.+. .+++|.+. .+|..++.+++|..|++++|.+. .+|
T Consensus 375 t~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP 451 (565)
T KOG0472|consen 375 TLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLP 451 (565)
T ss_pred ccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcc
Confidence 42211 122222221 334434333333332 33333333 44445555555555555555443 333
Q ss_pred ccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChh
Q 045323 556 HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPL 635 (740)
Q Consensus 556 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 635 (740)
..+.. +..|+.||+|.|++. .+|+
T Consensus 452 ~e~~~-------------------------------------------------------lv~Lq~LnlS~NrFr-~lP~ 475 (565)
T KOG0472|consen 452 EEMGS-------------------------------------------------------LVRLQTLNLSFNRFR-MLPE 475 (565)
T ss_pred hhhhh-------------------------------------------------------hhhhheecccccccc-cchH
Confidence 22222 114555666666554 5555
Q ss_pred hhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccc
Q 045323 636 QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 636 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
.+..+..++.+-.++|++....|++++++.+|.+|||.+|.+. .+|+.+.+|++|+.|++++|++.
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 5555555555555556666555555566666666666666665 55556666666666666666665
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=300.30 Aligned_cols=485 Identities=24% Similarity=0.305 Sum_probs=338.1
Q ss_pred CCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccE
Q 045323 132 LVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKF 211 (740)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 211 (740)
-..|+.+.+++|.+. .....+.++..|.+|++++|+++. .|. +++.+..++.+++++|.+.
T Consensus 44 qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~-aig~l~~l~~l~vs~n~ls---------------- 104 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPA-AIGELEALKSLNVSHNKLS---------------- 104 (565)
T ss_pred hcchhhhhhccCchh-hccHhhhcccceeEEEeccchhhh-CCH-HHHHHHHHHHhhcccchHh----------------
Confidence 356788888888887 455567888888888888888865 666 6888888888888887764
Q ss_pred EeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCc
Q 045323 212 FDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNIS 291 (740)
Q Consensus 212 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 291 (740)
.+|+.+....+++.+++++|.+. ++++.+ +.+..++.++..+|.
T Consensus 105 ----------------------------------~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 105 ----------------------------------ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQ 148 (565)
T ss_pred ----------------------------------hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccc
Confidence 15677777788899999999887 566655 467778888887777
Q ss_pred ccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCC
Q 045323 292 LFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQ 371 (740)
Q Consensus 292 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 371 (740)
+.+ .|..+..+.++..+++.+|.++ ..|..... ++.|+.++...|.+. .+|+.++.+. +|+-|++.+|++.
T Consensus 149 i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~-----~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 149 ISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLE-----SLELLYLRRNKIR 219 (565)
T ss_pred ccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchh-----hhHHHHhhhcccc
Confidence 653 4566777777888888888887 66666555 678888887777766 5666676655 5777777777776
Q ss_pred CcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhc
Q 045323 372 GQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFC 451 (740)
Q Consensus 372 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 451 (740)
. .| .|.++..|+++.++.|++.-...+...+++++..||+.+|++. ..|+.+..+.+|++|++++|.++ ..|..++
T Consensus 220 ~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 220 F-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred c-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc
Confidence 3 33 5677777777777777776433344456777777777777777 66777777777777777777777 4566677
Q ss_pred CCCCCCEEECCCCcCcccCCCCCC------CCcccEEEcCCCcccCcCccccCCCcCCCC----CCcccCCCCCCcEEec
Q 045323 452 QLRHLEILDLSRNNISGSLPSCSS------PFNIRRVHLSKNMLQGPLLGDLSYNRLNSN----IPDWMNRLPQLRYLIL 521 (740)
Q Consensus 452 ~l~~L~~L~l~~n~~~~~~~~~~~------~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~----~~~~~~~~~~L~~L~l 521 (740)
++ +|+.|.+.+|++...-..... +..|+. .+..-.++... ++..-.+. .........+.+.|++
T Consensus 296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~se----~~~e~~~t~~~~~~~~~~~~i~tkiL~~ 369 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-KIKDDGLSQSE----GGTETAMTLPSESFPDIYAIITTKILDV 369 (565)
T ss_pred cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-hhccCCCCCCc----ccccccCCCCCCcccchhhhhhhhhhcc
Confidence 77 777777777775421111111 111211 00000111000 00000011 1122345678899999
Q ss_pred ccCcccccCCccccCC--CCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHH-hhhcccccce
Q 045323 522 ANNGLEGEMPLQLCWL--NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI-LYTNYHNHKY 598 (740)
Q Consensus 522 s~n~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~-l~~~~~~~~~ 598 (740)
++-.++....+.|..- .-....++++|.+. ++|..+.. ++.+.. +..+++.+.+
T Consensus 370 s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~----------------------lkelvT~l~lsnn~isf 426 (565)
T KOG0472|consen 370 SDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE----------------------LKELVTDLVLSNNKISF 426 (565)
T ss_pred cccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH----------------------HHHHHHHHHhhcCcccc
Confidence 9998884433444332 24778999999885 55543322 222222 2222222222
Q ss_pred eeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
....+..+++|..|++++|-+. .+|..++.+..|++|+|+.|++. ..|.++..+..|+.+-.++|++.
T Consensus 427 ----------v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 427 ----------VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred ----------chHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 1123456789999999999987 78999999999999999999999 89999888888999988999999
Q ss_pred ccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCC
Q 045323 679 GKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFL 726 (740)
Q Consensus 679 ~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~ 726 (740)
...|+++.+|.+|..||+.+|.+..++|. ++.|.++++|++.||||-
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence 77777899999999999999999877665 699999999999999996
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-33 Score=296.82 Aligned_cols=303 Identities=26% Similarity=0.290 Sum_probs=163.9
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
..+..|+++.|.+. ..|-+.+.+..+|+.|++++|.+. ..|..+..+++|+.|+++.|.+.. +|. ...++.+|+++
T Consensus 21 ~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~-vp~-s~~~~~~l~~l 96 (1081)
T KOG0618|consen 21 EALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS-VPS-SCSNMRNLQYL 96 (1081)
T ss_pred HHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhh-Cch-hhhhhhcchhh
Confidence 34666666666554 333334555555777777766665 455566666667777766666643 554 56666666666
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
.|.+|.+. ..|..+..+++|+.|+++.|.+
T Consensus 97 nL~~n~l~--------------------------------------------------~lP~~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 97 NLKNNRLQ--------------------------------------------------SLPASISELKNLQYLDLSFNHF 126 (1081)
T ss_pred eeccchhh--------------------------------------------------cCchhHHhhhcccccccchhcc
Confidence 66666543 1455556666666666666666
Q ss_pred CCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCC
Q 045323 268 TREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPS 347 (740)
Q Consensus 268 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 347 (740)
. .+|..+ ..+..+..+..++|......+ .. .++.+++..+.+.+.++..+.. +.. .+++.+|.+.. .
T Consensus 127 ~-~~Pl~i-~~lt~~~~~~~s~N~~~~~lg----~~-~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~~-~-- 193 (1081)
T KOG0618|consen 127 G-PIPLVI-EVLTAEEELAASNNEKIQRLG----QT-SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEMEV-L-- 193 (1081)
T ss_pred C-CCchhH-HhhhHHHHHhhhcchhhhhhc----cc-cchhhhhhhhhcccchhcchhh-hhe--eeecccchhhh-h--
Confidence 5 555544 355555566666552222111 11 1555566666555555554443 222 46666665541 1
Q ss_pred CccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCC
Q 045323 348 SFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLG 427 (740)
Q Consensus 348 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~ 427 (740)
.+.. +++|+.+....|.+.... ..-++++.|+.++|.++...+.. ...+|+++++++|.+. ..|+++.
T Consensus 194 dls~-----~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~ 261 (1081)
T KOG0618|consen 194 DLSN-----LANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIG 261 (1081)
T ss_pred hhhh-----ccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHH
Confidence 1111 224555555555554211 12255666666666655333221 1245666666666666 3446666
Q ss_pred CCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCccc
Q 045323 428 NLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ 490 (740)
Q Consensus 428 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~ 490 (740)
.+.+|+.+...+|.++ ..|..+...++|+.|.+..|.+....+......+|+.|++..|++.
T Consensus 262 ~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc
Confidence 6666666666666664 4455555556666666666666544433334555555555555554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-32 Score=290.60 Aligned_cols=349 Identities=26% Similarity=0.309 Sum_probs=198.6
Q ss_pred CCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEec
Q 045323 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNV 336 (740)
Q Consensus 257 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l 336 (740)
++.+++..+.+.+.++..+ ..+.. .|+++.|.+. -..+..+.+|+.|.+..|.+. .+.. .-++|+.|+.
T Consensus 158 ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a 226 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYA 226 (1081)
T ss_pred chhhhhhhhhcccchhcch-hhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeee
Confidence 4445555555444444332 12222 3555555543 123444555666666666554 1111 1356777777
Q ss_pred cCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCc
Q 045323 337 ATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416 (740)
Q Consensus 337 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 416 (740)
+.|.++...+.-. ..+|+++++++|+++. .|..+..+.+|+.+++.+|.++ ..|..+....+|+.|.+..|
T Consensus 227 ~~n~l~~~~~~p~-------p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 227 DHNPLTTLDVHPV-------PLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred ccCcceeeccccc-------cccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhh
Confidence 7777663222211 1267788888877774 3466777778888888877774 45555666677777777777
Q ss_pred ccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCC-CCEEECCCCcCcccCCCCCC--CCcccEEEcCCCcccCcC
Q 045323 417 NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH-LEILDLSRNNISGSLPSCSS--PFNIRRVHLSKNMLQGPL 493 (740)
Q Consensus 417 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~--~~~L~~L~l~~n~i~~~~ 493 (740)
.+. .+|......+.|++|++..|.+....+..+.-... |..|+.+.|++. ..+.... .+.|+.|++.+|.+++
T Consensus 298 el~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd-- 373 (1081)
T KOG0618|consen 298 ELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTD-- 373 (1081)
T ss_pred hhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccc--
Confidence 777 55566666777777888777776444333333333 666666666665 3332222 4556666666555542
Q ss_pred ccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCcc
Q 045323 494 LGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLF 573 (740)
Q Consensus 494 ~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~ 573 (740)
.....+..+++|+.|++++|++.......+.+++.|+.|+++||+++ .+|..++.
T Consensus 374 -----------~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~------------- 428 (1081)
T KOG0618|consen 374 -----------SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN------------- 428 (1081)
T ss_pred -----------cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh-------------
Confidence 33334555666777777777666333345566666777777777664 33332222
Q ss_pred CCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcC
Q 045323 574 DQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNL 653 (740)
Q Consensus 574 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l 653 (740)
+ +.|+.|...+|++. ..| .+..++.|+.+|++.|++
T Consensus 429 ---------~---------------------------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 429 ---------L---------------------------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred ---------h---------------------------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence 1 24444555566665 566 466677777777777766
Q ss_pred ccc-CCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCc
Q 045323 654 TGE-SPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFN 699 (740)
Q Consensus 654 ~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 699 (740)
+.. +|... ..++|++|||++|.-....-..|..+.++...+++-|
T Consensus 465 ~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 465 SEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 643 23322 2266777777777643344445555555665665555
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-31 Score=268.69 Aligned_cols=347 Identities=25% Similarity=0.327 Sum_probs=259.7
Q ss_pred CCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCC-cCccc
Q 045323 299 PIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQG-QLFSK 377 (740)
Q Consensus 299 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 377 (740)
....+++++.|.+....+. .+|..+.. +.+|+.|.+..|++. .+-..+..++ .|+.+++++|++.. .+|..
T Consensus 27 ~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp-----~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLP-----RLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred hHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccch-----hhHHHhhhccccccCCCCch
Confidence 3344445555555555554 55665555 556666666666554 2222233322 57777777776653 35666
Q ss_pred ccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCC
Q 045323 378 EFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457 (740)
Q Consensus 378 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 457 (740)
+..+..|+.|++++|++. ..|..+...+++-.|++++|.|..+....|.+++.|-.|++++|.+. .+|..+..+..|+
T Consensus 99 iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQ 176 (1255)
T ss_pred hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhh
Confidence 677788888888888876 45666666777788888888888555556677888888888888887 4555667778888
Q ss_pred EEECCCCcCccc-CCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccC
Q 045323 458 ILDLSRNNISGS-LPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW 536 (740)
Q Consensus 458 ~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 536 (740)
+|++++|++... +....++.+|+.|.+++.+-+ -..+|..+..+.+|..+|+|.|.+. ..|.++-.
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccch------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 888888876522 222334566777777776533 1256777888899999999999998 78888888
Q ss_pred CCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccC
Q 045323 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPL 616 (740)
Q Consensus 537 l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (740)
+++|+.|++++|+|+.... .....
T Consensus 244 l~~LrrLNLS~N~iteL~~--------------------------------------------------------~~~~W 267 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNM--------------------------------------------------------TEGEW 267 (1255)
T ss_pred hhhhheeccCcCceeeeec--------------------------------------------------------cHHHH
Confidence 9999999999998862110 01223
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcc-cCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG-ESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
.+|+.|++|.|+++ .+|++++.++.|++|.+.+|+++- -+|++++.+.+|+.+..++|.+. ..|+++..+..|+.|.
T Consensus 268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLK 345 (1255)
T ss_pred hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhc
Confidence 47899999999998 899999999999999999999884 48999999999999999999998 9999999999999999
Q ss_pred ccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 696 ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
|++|++.+. |+.+-.++.+..||++.||.+-
T Consensus 346 L~~NrLiTL-PeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 346 LDHNRLITL-PEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccccceeec-hhhhhhcCCcceeeccCCcCcc
Confidence 999999876 6777888999999999999976
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-31 Score=264.49 Aligned_cols=342 Identities=26% Similarity=0.329 Sum_probs=210.1
Q ss_pred CCCCcEEeCCCCCCcC-cccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCC
Q 045323 82 FKNLEYFNMDFCTAFS-NSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLR 160 (740)
Q Consensus 82 l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 160 (740)
++.++.+|++ .+.|+ +.+|.....++.++.|.|...++. .+|. .++.+.+|++|.+++|++. .+...++.++.|+
T Consensus 6 LpFVrGvDfs-gNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFS-GNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cceeeccccc-CCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 4555666666 55666 346666667777777777766664 5665 6777777777777777765 3344566677777
Q ss_pred EEEcCCCCCCC-CCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEec
Q 045323 161 LLDVSFNQLTE-NISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239 (740)
Q Consensus 161 ~L~l~~n~l~~-~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (740)
.++++.|++.. .||. .+..+..|..||+++|.+..
T Consensus 82 sv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~E------------------------------------------- 117 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLRE------------------------------------------- 117 (1255)
T ss_pred HHhhhccccccCCCCc-hhcccccceeeecchhhhhh-------------------------------------------
Confidence 77777776532 2444 56667777777777766541
Q ss_pred CCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 045323 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGH 319 (740)
Q Consensus 240 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 319 (740)
.|..+..-+++-.|+|++|+|. .+|..+|-++..|-.|+|++|++.. .|..+..+..|++|++++|.+. .
T Consensus 118 -------vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~-h 187 (1255)
T KOG0444|consen 118 -------VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLN-H 187 (1255)
T ss_pred -------cchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhh-H
Confidence 4666777778888999999887 7888887788888888888877653 3445666677777777777654 1
Q ss_pred CchhhhhcCCCCcEEeccCCccc-ccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecC
Q 045323 320 IPIEIGEVLPNLVVLNVATNAFN-GSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDI 398 (740)
Q Consensus 320 ~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 398 (740)
.-..-...+.+|+.|.+++.+-+ ..+|.++..+. +|..+|++.|++. ..|..+..+++|+.|++++|+++..
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~-----NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL- 260 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH-----NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL- 260 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhh-----hhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-
Confidence 11111112445566666655422 24455555444 5666666666666 4556666666666666666666532
Q ss_pred CcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcC-CchhhhcCCCCCCEEECCCCcCcccCCCCCCCC
Q 045323 399 PKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477 (740)
Q Consensus 399 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 477 (740)
........+|++|++++|+++ .+|+++..+++|+.|...+|+++. -+|..+..+..|+++..++|.+.-.......|.
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~ 339 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCV 339 (1255)
T ss_pred eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhH
Confidence 222233346666666666666 566666666666666666666542 345556666666666666666552222333344
Q ss_pred cccEEEcCCCcc
Q 045323 478 NIRRVHLSKNML 489 (740)
Q Consensus 478 ~L~~L~l~~n~i 489 (740)
.|+.|.++.|++
T Consensus 340 kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 340 KLQKLKLDHNRL 351 (1255)
T ss_pred HHHHhcccccce
Confidence 555555554444
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=236.58 Aligned_cols=344 Identities=19% Similarity=0.204 Sum_probs=172.9
Q ss_pred HhcCCCCCEEEccCCcc------cccCCCCCCCCC-CCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCC
Q 045323 276 LEKNKKLKRLSLVNISL------FGPFPLPIHCHK-NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSS 348 (740)
Q Consensus 276 ~~~~~~L~~L~L~~~~~------~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 348 (740)
|..+++|+.|.+..+.. ....|..+..++ +|+.|.+.++.+. .+|..+. ..+|+.|++.++.+. .++..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-ccccc
Confidence 34555555555543321 112233333332 3555555555554 4554432 345555555555544 23333
Q ss_pred ccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCC
Q 045323 349 FGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGN 428 (740)
Q Consensus 349 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~ 428 (740)
+..+. +|+.|+++++......| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ +
T Consensus 630 ~~~l~-----~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 630 VHSLT-----GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred cccCC-----CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 33222 45555555543322233 24445555555555554444455555555555555555543333344333 4
Q ss_pred CCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCc
Q 045323 429 LSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPD 508 (740)
Q Consensus 429 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~ 508 (740)
+++|+.|++++|......|.. .++|++|++++|.+. .+|....+++|+.|.+.++...... +.+....+.
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~------~~~~~l~~~ 772 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLW------ERVQPLTPL 772 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhcc------ccccccchh
Confidence 555555555555433233321 234555555555544 3333334455555555443211000 000001111
Q ss_pred ccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHH
Q 045323 509 WMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588 (740)
Q Consensus 509 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 588 (740)
.+...++|+.|++++|.....+|..+..+++|+.|++++|...+.+|...
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------ 822 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------ 822 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------
Confidence 12223566666666665554556666666666666666654332333211
Q ss_pred hhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCC
Q 045323 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVE 668 (740)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 668 (740)
.+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|+
T Consensus 823 --------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~ 872 (1153)
T PLN03210 823 --------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLS 872 (1153)
T ss_pred --------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCC
Confidence 2346777777776554444432 356777777777777 5666677777777
Q ss_pred EEeCCCCccCccCCcccccCCcCceeeccCcc
Q 045323 669 SLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 669 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 700 (740)
.|++++|+-...+|.....+++|+.+++++|.
T Consensus 873 ~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 77777754333566666677777777777774
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-25 Score=212.93 Aligned_cols=290 Identities=22% Similarity=0.228 Sum_probs=197.1
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCC-cccccCCCcCCCCCCCCCEEeC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD-NNISGNIPTRLGNLSFLDAIMM 437 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l 437 (740)
...++++..|.|+...+..|..+++|++|+|++|.|+.+.|.+|.+++++..|.+.+ |+|+......|+++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 566777777777777777777788888888888888777778888777777776666 7777666667777777887777
Q ss_pred CCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCc
Q 045323 438 PNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLR 517 (740)
Q Consensus 438 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~ 517 (740)
.-|.+.....++|..+++|..|.+..|.+..... ..|..+.+++
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~------------------------------------~tf~~l~~i~ 191 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICK------------------------------------GTFQGLAAIK 191 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhcc------------------------------------ccccchhccc
Confidence 7777777777777777777777777776651111 1355556666
Q ss_pred EEecccCcccccCCccccCCCCCCEEEccCCcCcC-----CCCccccccccccccCCCCccCCCchhhccchhhHHhhhc
Q 045323 518 YLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSG-----QIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTN 592 (740)
Q Consensus 518 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-----~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 592 (740)
++.+..|.+- ..++++.+... +..+++.. .+|..+.... .-+..+..|... ++
T Consensus 192 tlhlA~np~i-----cdCnL~wla~~-~a~~~ietsgarc~~p~rl~~~R---------i~q~~a~kf~c~--~e----- 249 (498)
T KOG4237|consen 192 TLHLAQNPFI-----CDCNLPWLADD-LAMNPIETSGARCVSPYRLYYKR---------INQEDARKFLCS--LE----- 249 (498)
T ss_pred hHhhhcCccc-----cccccchhhhH-HhhchhhcccceecchHHHHHHH---------hcccchhhhhhh--HH-----
Confidence 6666666532 12222222221 11111110 1111111100 001111111000 00
Q ss_pred ccccceeeeeeeccccceeecccCCCccEEEcccCcccccCh-hhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEe
Q 045323 593 YHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIP-LQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLD 671 (740)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 671 (740)
++.+--.+.+...++.| ..|..+++|++|+|++|+++.+-+.+|.....+++|+
T Consensus 250 -------------------------sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 250 -------------------------SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred -------------------------hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 11111122232333444 4599999999999999999999999999999999999
Q ss_pred CCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 672 LSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 672 Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
|..|+|...-...|..+..|+.|+|.+|+|+...|..|..+.+|+.+.+-+|||.|+|.|
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 999999976667899999999999999999999999999999999999999999999975
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=230.21 Aligned_cols=270 Identities=24% Similarity=0.298 Sum_probs=173.8
Q ss_pred hhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCC
Q 045323 250 FLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLP 329 (740)
Q Consensus 250 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~ 329 (740)
.+..+++|+.|+++++.....+|. +..+++|++|++++|......|..+..+++|+.|++++|...+.+|..+ .++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~ 704 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK 704 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence 344455566666665544334443 2455666666666665555555556666666666666654333555443 256
Q ss_pred CCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCccee-------cCCcCC
Q 045323 330 NLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIG-------DIPKTL 402 (740)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-------~~~~~l 402 (740)
+|+.|++++|......|... .+|++|++++|.+.. +|..+ .+++|++|.+.++.... ..+...
T Consensus 705 sL~~L~Lsgc~~L~~~p~~~--------~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDIS--------TNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CCCEEeCCCCCCcccccccc--------CCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhh
Confidence 66666666665443333221 157777777776653 33322 45667777666543211 111112
Q ss_pred CCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEE
Q 045323 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482 (740)
Q Consensus 403 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 482 (740)
..+++|+.|++++|.....+|..++++++|+.|++++|.....+|... ++++|+.|++++|.....+|.. +.+|+.|
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L 851 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDL 851 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEe
Confidence 234678888888887776788888888899999998876544566554 6888999999988765555443 4678889
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcC
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 550 (740)
++++|.++ .+|.++..+++|+.|++++|+-...++..+..+++|+.+++++|.-
T Consensus 852 ~Ls~n~i~--------------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 852 NLSRTGIE--------------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred ECCCCCCc--------------cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 98888775 5677888899999999998644335676778889999999999863
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-25 Score=211.16 Aligned_cols=291 Identities=19% Similarity=0.183 Sum_probs=183.6
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCC-CCCCCCCCccccCCCCCCCE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSF-NQLTENISSSPLMNLTYIEE 186 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~i~~~~l~~l~~L~~ 186 (740)
..-..++|..|+|+ .||+.+|+.+++|++|||++|.|+.+.|.+|+++++|..|-+.+ |+|+. +|...|.++..|+-
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHHHH
Confidence 45567889999998 88888999999999999999999999999999999988888877 77865 88878888888888
Q ss_pred EeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCC
Q 045323 187 LWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 187 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 266 (740)
|.+.-|.+. .+ ....+..++++..|.+.+|.
T Consensus 145 LllNan~i~-Ci------------------------------------------------r~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 145 LLLNANHIN-CI------------------------------------------------RQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred HhcChhhhc-ch------------------------------------------------hHHHHHHhhhcchhcccchh
Confidence 887777764 22 23445555566666666665
Q ss_pred CCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCC
Q 045323 267 LTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIP 346 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 346 (740)
+. .++...+..+..++++.+..+.+... .+++.+.. ++..+.+. . .++.......+.+.++...-+
T Consensus 176 ~q-~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wla~-~~a~~~ie------t-sgarc~~p~rl~~~Ri~q~~a 241 (498)
T KOG4237|consen 176 IQ-SICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWLAD-DLAMNPIE------T-SGARCVSPYRLYYKRINQEDA 241 (498)
T ss_pred hh-hhccccccchhccchHhhhcCccccc-----cccchhhh-HHhhchhh------c-ccceecchHHHHHHHhcccch
Confidence 54 34433334555566665555543211 11111111 00001100 0 001111111222222221111
Q ss_pred CCccCcCccccCCccEEEccCCCCCCc-CcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcC
Q 045323 347 SSFGNTWPWGCFYLEYLVLSNNSLQGQ-LFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTR 425 (740)
Q Consensus 347 ~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 425 (740)
..|..... .+..--.+.+...+. ....|..+++|++|++++|+++.+.+.+|.+..++++|.+..|++..+-..+
T Consensus 242 ~kf~c~~e----sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~ 317 (498)
T KOG4237|consen 242 RKFLCSLE----SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGM 317 (498)
T ss_pred hhhhhhHH----hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHh
Confidence 11111000 010001111222222 2234678888888888888888888888888888888888888887666677
Q ss_pred CCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCc
Q 045323 426 LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467 (740)
Q Consensus 426 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 467 (740)
|.++..|+.|++++|+|+...|.+|..+.+|.+|.+-.|.+.
T Consensus 318 f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888888888888888888888888888888888888877654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-20 Score=200.89 Aligned_cols=82 Identities=29% Similarity=0.381 Sum_probs=48.9
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++. .+|.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 4566666666665 34432 2456666666666663 4432 235566666666666 556666666666666676
Q ss_pred CcccccCCCCc
Q 045323 698 FNNLSGKTPDR 708 (740)
Q Consensus 698 ~N~l~~~~~~~ 708 (740)
+|++++..+..
T Consensus 454 ~N~Ls~~~~~~ 464 (788)
T PRK15387 454 GNPLSERTLQA 464 (788)
T ss_pred CCCCCchHHHH
Confidence 66666655543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=191.38 Aligned_cols=63 Identities=25% Similarity=0.388 Sum_probs=42.4
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCccc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRL 685 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 685 (740)
+|+.|++++|++. .+|.. ..+|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5666777777776 35542 245667777777777 566667777777777777777776655554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-18 Score=186.29 Aligned_cols=246 Identities=26% Similarity=0.386 Sum_probs=146.2
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
+...|+++++.++. +|..+. +.++.|++++|+++. +|..+. ++|+.|++++|.++ .+|..+. ..|+.|+++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 46777887777774 343332 467788888887763 444332 47788888887777 3454332 467777777
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcE
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 518 (740)
+|.+. .+|..+. .+|+.|++++|++.. +|... +.+|+.|++++|+++. +|..+. ++|+.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l-~~sL~~L~Ls~N~Lt~--------------LP~~lp--~sL~~ 308 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENL-PEELRYLSVYDNSIRT--------------LPAHLP--SGITH 308 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc-ccccc-CCCCcEEECCCCcccc--------------Ccccch--hhHHH
Confidence 77776 3444442 467777777777763 33311 3467777777766652 222221 35666
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccce
Q 045323 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598 (740)
Q Consensus 519 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 598 (740)
|++++|.++. +|..+ .++|+.|++++|.+++ +|..+
T Consensus 309 L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l---------------------------------------- 344 (754)
T PRK15370 309 LNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL---------------------------------------- 344 (754)
T ss_pred HHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh----------------------------------------
Confidence 7777776663 33322 2566777777766542 22110
Q ss_pred eeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
+++|+.|++++|++. .+|..+. ++|++|+|++|+++ .+|..+. .+|+.|++++|++.
T Consensus 345 -----------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 345 -----------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred -----------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 136677777777776 4555442 56777777777777 3444432 35777777777776
Q ss_pred ccCCccccc----CCcCceeeccCcccc
Q 045323 679 GKIPPRLIE----LNALAVFSVAFNNLS 702 (740)
Q Consensus 679 ~~~~~~l~~----l~~L~~L~ls~N~l~ 702 (740)
.+|..+.. ++++..+++.+|+++
T Consensus 402 -~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 402 -RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 44443333 366677777777765
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=183.70 Aligned_cols=183 Identities=27% Similarity=0.453 Sum_probs=101.4
Q ss_pred CCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCC
Q 045323 407 ALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSK 486 (740)
Q Consensus 407 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 486 (740)
+|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++.. |.. .+++|+.|++++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~-lp~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAH-LPSGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-ccc-chhhHHHHHhcC
Confidence 3444555555444 2333222 24555555555554 2333221 3566666666655532 211 123566666666
Q ss_pred CcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccc
Q 045323 487 NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYR 566 (740)
Q Consensus 487 n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~ 566 (740)
|.++ .+|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|++. .+|..+
T Consensus 314 N~Lt--------------~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-------- 365 (754)
T PRK15370 314 NSLT--------------ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-------- 365 (754)
T ss_pred Cccc--------------cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--------
Confidence 6554 222222 2567777777777763 444332 67788888877765 233211
Q ss_pred cCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEE
Q 045323 567 EDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTL 646 (740)
Q Consensus 567 ~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 646 (740)
.+.|+.|++++|++. .+|..+. ..|+.|
T Consensus 366 -------------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~L 393 (754)
T PRK15370 366 -------------------------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIM 393 (754)
T ss_pred -------------------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHH
Confidence 126777888888777 4555544 367778
Q ss_pred ECcCCcCcccCCccc----cCCCCCCEEeCCCCccC
Q 045323 647 NLSHNNLTGESPVTF----SHMKQVESLDLSYNNLN 678 (740)
Q Consensus 647 ~L~~N~l~~~~~~~l----~~l~~L~~L~Ls~n~l~ 678 (740)
++++|+++ .+|..+ +..+.+..|++.+|+++
T Consensus 394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 88888877 444433 33467788888888876
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-19 Score=183.86 Aligned_cols=109 Identities=22% Similarity=0.311 Sum_probs=71.1
Q ss_pred CCccEEEcccCccccc----ChhhhhcCCCCcEEECcCCcCcccCCcccc-----CCCCCCEEeCCCCccCc----cCCc
Q 045323 617 HSMSGLDLSCNKLIGE----IPLQIGELSRIHTLNLSHNNLTGESPVTFS-----HMKQVESLDLSYNNLNG----KIPP 683 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~----~~~~ 683 (740)
++|+.|++++|.+.+. ++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .++.
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 4677777777766533 233455667788888888877753222221 23678888888888762 2344
Q ss_pred ccccCCcCceeeccCcccccC----CCCcccCC-CCccccccccCCC
Q 045323 684 RLIELNALAVFSVAFNNLSGK----TPDRVAQF-GTFEEDSYEGNPF 725 (740)
Q Consensus 684 ~l~~l~~L~~L~ls~N~l~~~----~~~~~~~~-~~l~~l~l~~Np~ 725 (740)
.+..+++|+.+++++|.++.. ....+... +.++++++.+|||
T Consensus 273 ~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 273 VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 556667888888888888754 34444455 6788888888876
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-18 Score=178.43 Aligned_cols=86 Identities=24% Similarity=0.299 Sum_probs=57.1
Q ss_pred CCCccEEEcccCcccccChhhhhc-----CCCCcEEECcCCcCcc----cCCccccCCCCCCEEeCCCCccCcc----CC
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGE-----LSRIHTLNLSHNNLTG----ESPVTFSHMKQVESLDLSYNNLNGK----IP 682 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~ 682 (740)
+++|+.|++++|.+.+..+..+.. .+.|++|++++|.+++ .....+..+++|+.+++++|.++.. ..
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 457777888887776533333322 3688888888888762 2344556667888888888888843 33
Q ss_pred cccccC-CcCceeeccCccc
Q 045323 683 PRLIEL-NALAVFSVAFNNL 701 (740)
Q Consensus 683 ~~l~~l-~~L~~L~ls~N~l 701 (740)
..+... +.|+.+++.+|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 344444 6788888888764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-18 Score=143.19 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=54.2
Q ss_pred CccEEEcccCcccc-cChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIG-EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
.|+.||+++|++.. ..|..|..++.|+-|.|+.|.+. .+|...+.+++|+.|.+..|.+. .+|..+..+++|+.|++
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 44444444444431 24444555555555555555555 44444455555555555555555 45555555556666666
Q ss_pred cCcccccCCCCcccCCC---CccccccccCCCC
Q 045323 697 AFNNLSGKTPDRVAQFG---TFEEDSYEGNPFL 726 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~---~l~~l~l~~Np~~ 726 (740)
.+|+++..+|+. +.+. +=+...++.|||.
T Consensus 181 qgnrl~vlppel-~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 181 QGNRLTVLPPEL-ANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred ccceeeecChhh-hhhhhhhhHHHHhhhhCCCC
Confidence 666665555542 3321 1123445555553
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-17 Score=138.41 Aligned_cols=184 Identities=25% Similarity=0.438 Sum_probs=125.9
Q ss_pred CCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC
Q 045323 452 QLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP 531 (740)
Q Consensus 452 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 531 (740)
.+...+.|.++.|+++...|....+.+|+.|++++|+|. .+|..++++++|+.|+++-|++. ..|
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--------------~lp~~issl~klr~lnvgmnrl~-~lp 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--------------ELPTSISSLPKLRILNVGMNRLN-ILP 95 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--------------hcChhhhhchhhhheecchhhhh-cCc
Confidence 344555555666666555555555556666666666554 56777778888888888888887 778
Q ss_pred ccccCCCCCCEEEccCCcCcC-CCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccce
Q 045323 532 LQLCWLNKLQLVDLSHNNLSG-QIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYT 610 (740)
Q Consensus 532 ~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 610 (740)
..|+.+|.|+.||+++|++.. ..|. .|-.+..|
T Consensus 96 rgfgs~p~levldltynnl~e~~lpg----------------------nff~m~tl------------------------ 129 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPG----------------------NFFYMTTL------------------------ 129 (264)
T ss_pred cccCCCchhhhhhccccccccccCCc----------------------chhHHHHH------------------------
Confidence 888888888888888887752 1222 22233333
Q ss_pred eecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCC-
Q 045323 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELN- 689 (740)
Q Consensus 611 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~- 689 (740)
+-|++++|.+. .+|..++.+++|+.|.+..|.+. ..|..++.++.|++|.+.+|+++ .+|+.+.++.
T Consensus 130 ---------ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l 197 (264)
T KOG0617|consen 130 ---------RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDL 197 (264)
T ss_pred ---------HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhh
Confidence 33557777776 77777888888888888888887 67777888888888888888887 6666666643
Q ss_pred --cCceeeccCcccccCCCCc
Q 045323 690 --ALAVFSVAFNNLSGKTPDR 708 (740)
Q Consensus 690 --~L~~L~ls~N~l~~~~~~~ 708 (740)
+=+...+.+|+....+.+.
T Consensus 198 ~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 198 VGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred hhhHHHHhhhhCCCCChHHHH
Confidence 2345567777776555554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-12 Score=142.22 Aligned_cols=119 Identities=34% Similarity=0.582 Sum_probs=110.7
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcccCC-CCccccccccCCCCCCcCCCCCCC
Q 045323 698 FNNLSGKTPDRVAQF-GTFEEDSYEGNPFLCGQPLLKSCN 736 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~-~~l~~l~l~~Np~~c~~~l~~~~~ 736 (740)
+|++++.+|..++.. ..+..+++.+|++.|+++-.+.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999877654 467789999999999988777784
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-11 Score=134.43 Aligned_cols=143 Identities=24% Similarity=0.343 Sum_probs=111.0
Q ss_pred CCcHHHHHHHHHHhh--------cCCCCCCc----cccceEecCCC----CceEEEECCCCCCCCCCCcccccccccccc
Q 045323 7 GCLEQEGYALLKLKH--------DFFNNHCC----QWACVECNTTT----GKVISLDLDGTRKLGDGEGYLNASLFTSFQ 70 (740)
Q Consensus 7 ~~~~~~~~~~~~~~~--------~~~~~~~c----~~~~~~c~~~~----~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~ 70 (740)
...+.|..|++++|+ +|..+.|+ .|.|+.|.... ..|+.++|+++.+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L----------------- 430 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGL----------------- 430 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCc-----------------
Confidence 445678889999987 47776664 69999995321 1366666665543
Q ss_pred ccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCccccccc
Q 045323 71 QLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLP 150 (740)
Q Consensus 71 ~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (740)
.+.+|..++.+++|++|+|++|.+.+.+|. .+..+++|++|+|++|.+++.+|
T Consensus 431 --------------------------~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP 483 (623)
T PLN03150 431 --------------------------RGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIP 483 (623)
T ss_pred --------------------------cccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCc
Confidence 556677788889999999999998878886 78899999999999999988889
Q ss_pred ccCcCCCCCCEEEcCCCCCCCCCCccccCC-CCCCCEEeccCCcc
Q 045323 151 WCLANLTYLRLLDVSFNQLTENISSSPLMN-LTYIEELWLSNNHF 194 (740)
Q Consensus 151 ~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~-l~~L~~L~l~~n~~ 194 (740)
..++++++|++|++++|++++.+|. .+.. ..++..+++.+|..
T Consensus 484 ~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 484 ESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred hHHhcCCCCCEEECcCCcccccCCh-HHhhccccCceEEecCCcc
Confidence 8899999999999999999888887 4554 34667788887754
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-11 Score=113.04 Aligned_cols=156 Identities=22% Similarity=0.193 Sum_probs=75.8
Q ss_pred ccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC-CCcCcCCchhhhcCCC
Q 045323 376 SKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP-NNRLEGPIPSAFCQLR 454 (740)
Q Consensus 376 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~-~n~~~~~~~~~l~~l~ 454 (740)
..+..+.+|+.+.++.|.-..+.. ....-|.|+.+.+....+... +. +--...+.-..-. ....++.....+....
T Consensus 208 f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~-~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDV-PS-LLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred cchHHhhhhheeeeeccchhheec-eeecCchhheeeeeccccccc-cc-ccchhhhcCccCCCCCccCCceEEecchHh
Confidence 344456677777777774322111 111225677777666554421 11 1111111111111 0111122222233345
Q ss_pred CCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccc
Q 045323 455 HLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQL 534 (740)
Q Consensus 455 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 534 (740)
.|+++|+++|.|+..-.+..-.|.++.|++++|.|. .+ ..++.+++|+.||+|+|.++ ...++-
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~--------------~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR--------------TV-QNLAELPQLQLLDLSGNLLA-ECVGWH 348 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccccee--------------ee-hhhhhcccceEeecccchhH-hhhhhH
Confidence 677888888877754444444566666666666553 11 22555666666666666665 333333
Q ss_pred cCCCCCCEEEccCCcC
Q 045323 535 CWLNKLQLVDLSHNNL 550 (740)
Q Consensus 535 ~~l~~L~~L~l~~n~~ 550 (740)
..+-++++|.+++|.+
T Consensus 349 ~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKI 364 (490)
T ss_pred hhhcCEeeeehhhhhH
Confidence 4455666666666654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-11 Score=108.39 Aligned_cols=134 Identities=24% Similarity=0.267 Sum_probs=52.8
Q ss_pred cccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcc
Q 045323 66 FTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNL 145 (740)
Q Consensus 66 f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 145 (740)
+.+..+++.|+|.++.++.++.++.. +.+|++|++++|.|. .+. .+..+++|++|++++|.|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~---------------l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGAT---------------LDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp ---------------------S--TT----------------TT--EEE-TTS--S---T--T----TT--EEE--SS--
T ss_pred cccccccccccccccccccccchhhh---------------hcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCC
Confidence 34455678888888888777754322 678999999999997 665 688899999999999999
Q ss_pred cccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccC--CccccccCCCccEEeCCCc
Q 045323 146 SGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISI--SLEPFFNHSKLKFFDGDIY 217 (740)
Q Consensus 146 ~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~~ 217 (740)
+...+.....+++|++|++++|++.+.-....+..+++|++|++.+|.+.... ....+..+++|+.||-...
T Consensus 77 ~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 77 SSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 86433223468999999999999866323235778999999999999886321 1123467788888877553
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-10 Score=123.13 Aligned_cols=181 Identities=33% Similarity=0.498 Sum_probs=105.6
Q ss_pred CCCCCCEEECCCCcCcccCCCCCCCC-cccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccC
Q 045323 452 QLRHLEILDLSRNNISGSLPSCSSPF-NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530 (740)
Q Consensus 452 ~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 530 (740)
..+.++.|++.+|.++...+...... +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--------------~l~~~~~~l~~L~~L~l~~N~l~-~l 178 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--------------SLPSPLRNLPNLKNLDLSFNDLS-DL 178 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchh--------------hhhhhhhccccccccccCCchhh-hh
Confidence 33555666666665553333222332 5666666666554 33445666777777777777777 34
Q ss_pred CccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccce
Q 045323 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYT 610 (740)
Q Consensus 531 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 610 (740)
+......+.|+.|++++|.+. .+|...
T Consensus 179 ~~~~~~~~~L~~L~ls~N~i~-~l~~~~---------------------------------------------------- 205 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGNKIS-DLPPEI---------------------------------------------------- 205 (394)
T ss_pred hhhhhhhhhhhheeccCCccc-cCchhh----------------------------------------------------
Confidence 443445677777777777765 222210
Q ss_pred eecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCc
Q 045323 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNA 690 (740)
Q Consensus 611 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 690 (740)
.....|+++++++|++. ..+..+..+..+..+.+.+|++. ..+..++.+++++.|++++|.++. ++. +..+.+
T Consensus 206 ---~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~ 278 (394)
T COG4886 206 ---ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTN 278 (394)
T ss_pred ---hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCc
Confidence 01124666666666443 45555666666666666777666 225555666667777777777763 332 666667
Q ss_pred CceeeccCcccccCCCC
Q 045323 691 LAVFSVAFNNLSGKTPD 707 (740)
Q Consensus 691 L~~L~ls~N~l~~~~~~ 707 (740)
|+.|++++|.++..+|.
T Consensus 279 l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 279 LRELDLSGNSLSNALPL 295 (394)
T ss_pred cCEEeccCccccccchh
Confidence 77777777766655444
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-10 Score=121.81 Aligned_cols=194 Identities=30% Similarity=0.471 Sum_probs=156.8
Q ss_pred CEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCC-CCcEEecccCcccccCCcccc
Q 045323 457 EILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLP-QLRYLILANNGLEGEMPLQLC 535 (740)
Q Consensus 457 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~ 535 (740)
..++...+.+............++.+++.+|.++ .++....... +|+.|++++|.+. .++..+.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~--------------~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~ 160 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT--------------DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR 160 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccc--------------cCccccccchhhcccccccccchh-hhhhhhh
Confidence 4688888887555555555678999999999887 4555555564 8999999999998 4555688
Q ss_pred CCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeeccc
Q 045323 536 WLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP 615 (740)
Q Consensus 536 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (740)
.+++|+.|++++|++.. +|... ..
T Consensus 161 ~l~~L~~L~l~~N~l~~-l~~~~-------------------------------------------------------~~ 184 (394)
T COG4886 161 NLPNLKNLDLSFNDLSD-LPKLL-------------------------------------------------------SN 184 (394)
T ss_pred ccccccccccCCchhhh-hhhhh-------------------------------------------------------hh
Confidence 89999999999999862 22211 13
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
.+.|+.|++++|++. .+|..+.....|++|.+++|++. ..+..+..++++..+.+++|++. ..+..+..++.++.|+
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD 261 (394)
T ss_pred hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceec
Confidence 458999999999998 77776667788999999999755 56777789999999999999998 4477888899999999
Q ss_pred ccCcccccCCCCcccCCCCccccccccCCCC
Q 045323 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFL 726 (740)
Q Consensus 696 ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~ 726 (740)
+++|.++...+ ++.+.+++.+++++|+..
T Consensus 262 ~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 262 LSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccccccc--ccccCccCEEeccCcccc
Confidence 99999997766 689999999999998764
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-11 Score=111.05 Aligned_cols=132 Identities=25% Similarity=0.242 Sum_probs=89.8
Q ss_pred CCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcc
Q 045323 514 PQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNY 593 (740)
Q Consensus 514 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~ 593 (740)
+.|+++|+|+|.|+ .+.+...-.|.++.|++++|.+...
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v---------------------------------------- 322 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV---------------------------------------- 322 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee----------------------------------------
Confidence 55777888888777 4445555667888888888876511
Q ss_pred cccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCC
Q 045323 594 HNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLS 673 (740)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 673 (740)
..+..+++|+.||+|+|.++ .+...-..+.+.++|.|++|.+. .-.+++.+=+|..||++
T Consensus 323 -----------------~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 323 -----------------QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLS 382 (490)
T ss_pred -----------------hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheecccc
Confidence 01233457788888888876 44444456778888888888776 33456666778888888
Q ss_pred CCccCccC-CcccccCCcCceeeccCcccccCCC
Q 045323 674 YNNLNGKI-PPRLIELNALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 674 ~n~l~~~~-~~~l~~l~~L~~L~ls~N~l~~~~~ 706 (740)
.|+|.... -..+.++|.|+.+.|-+|++.+...
T Consensus 383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 88887432 2466777888888888888876654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-12 Score=127.80 Aligned_cols=188 Identities=27% Similarity=0.503 Sum_probs=110.6
Q ss_pred eCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccC
Q 045323 412 YISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG 491 (740)
Q Consensus 412 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~ 491 (740)
|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|+.+|++.|++. .+|.....--|+.|.+++|+++
T Consensus 81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl~- 156 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKLT- 156 (722)
T ss_pred hccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCccc-
Confidence 34444433 33333333444444444444443 34444455555555555555554 2222222234555555555554
Q ss_pred cCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCC
Q 045323 492 PLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHD 571 (740)
Q Consensus 492 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~ 571 (740)
.+|..++..+.|..||.+.|.+. .+|..++++.+|+.|.++.|.+. .+|..+..+
T Consensus 157 -------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L---------- 211 (722)
T KOG0532|consen 157 -------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL---------- 211 (722)
T ss_pred -------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC----------
Confidence 55666666777778888888776 56667777788888888877765 333332221
Q ss_pred ccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCC
Q 045323 572 LFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHN 651 (740)
Q Consensus 572 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N 651 (740)
.|..||+|+|++. .+|..|.+|+.|++|-|.+|
T Consensus 212 ----------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 212 ----------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ----------------------------------------------ceeeeecccCcee-ecchhhhhhhhheeeeeccC
Confidence 4777888888887 78888888888888888888
Q ss_pred cCcccCCccccCCCC---CCEEeCCCCc
Q 045323 652 NLTGESPVTFSHMKQ---VESLDLSYNN 676 (740)
Q Consensus 652 ~l~~~~~~~l~~l~~---L~~L~Ls~n~ 676 (740)
.+. ..|..+..... .++|+..-++
T Consensus 245 PLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 245 PLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCC-CChHHHHhccceeeeeeecchhcc
Confidence 888 55554432222 3455665553
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-11 Score=118.64 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=38.3
Q ss_pred CCCCCEEECCCCCCCCccC-hhhhcCCCCCCEEEccCCccccc--ccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCC
Q 045323 107 MASLKYLSLSNSYLNGTIL-DQGLCELVYLQEVNIDRNNLSGS--LPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTY 183 (740)
Q Consensus 107 l~~L~~L~Ls~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~ 183 (740)
++.|+...|.++.+. ..+ .+....+++++.|||++|-+... .......+|+|+.|+++.|++..-.....-..+++
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 455555555555443 111 12344555555555555544321 12223445555555555555433222211223444
Q ss_pred CCEEeccCCcc
Q 045323 184 IEELWLSNNHF 194 (740)
Q Consensus 184 L~~L~l~~n~~ 194 (740)
|+.|.++.|.+
T Consensus 199 lK~L~l~~CGl 209 (505)
T KOG3207|consen 199 LKQLVLNSCGL 209 (505)
T ss_pred hheEEeccCCC
Confidence 55555555444
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-12 Score=128.11 Aligned_cols=196 Identities=26% Similarity=0.401 Sum_probs=151.7
Q ss_pred CCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC
Q 045323 452 QLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP 531 (740)
Q Consensus 452 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 531 (740)
.+.--...|++.|++......+..+..|+.+.+..|.+. .+|..+..+..|..++++.|++. ..|
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--------------~ip~~i~~L~~lt~l~ls~NqlS-~lp 137 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR--------------TIPEAICNLEALTFLDLSSNQLS-HLP 137 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce--------------ecchhhhhhhHHHHhhhccchhh-cCC
Confidence 445556778888888755555555777888888777765 67888888899999999999998 566
Q ss_pred ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeecccccee
Q 045323 532 LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTY 611 (740)
Q Consensus 532 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 611 (740)
..++.+ -|+.|-+++|+++ .+|..++
T Consensus 138 ~~lC~l-pLkvli~sNNkl~-~lp~~ig---------------------------------------------------- 163 (722)
T KOG0532|consen 138 DGLCDL-PLKVLIVSNNKLT-SLPEEIG---------------------------------------------------- 163 (722)
T ss_pred hhhhcC-cceeEEEecCccc-cCCcccc----------------------------------------------------
Confidence 666655 5888999999885 4554333
Q ss_pred ecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcC
Q 045323 612 EVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691 (740)
Q Consensus 612 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 691 (740)
..+.|..||.++|++. .+|..+..+.+|+.|++..|++. ..|..+..+ .|..||+|.|+++ .+|..|.+|..|
T Consensus 164 ---~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~L 236 (722)
T KOG0532|consen 164 ---LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHL 236 (722)
T ss_pred ---cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhh
Confidence 2347888999999997 78888999999999999999998 555555655 5899999999999 899999999999
Q ss_pred ceeeccCcccccCCCCc--ccCCCCccccccccC
Q 045323 692 AVFSVAFNNLSGKTPDR--VAQFGTFEEDSYEGN 723 (740)
Q Consensus 692 ~~L~ls~N~l~~~~~~~--~~~~~~l~~l~l~~N 723 (740)
++|.|.+|++...+... .+..--+++|+.+.+
T Consensus 237 q~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 237 QVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 99999999998554432 133344677877764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-11 Score=116.20 Aligned_cols=255 Identities=21% Similarity=0.186 Sum_probs=122.8
Q ss_pred cccCCCCCEEECCCCCCCCcc---ChhhhcCCCCCCEEEccCCc---cccc-------ccccCcCCCCCCEEEcCCCCCC
Q 045323 104 SELMASLKYLSLSNSYLNGTI---LDQGLCELVYLQEVNIDRNN---LSGS-------LPWCLANLTYLRLLDVSFNQLT 170 (740)
Q Consensus 104 l~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~L~~n~---l~~~-------~~~~l~~l~~L~~L~l~~n~l~ 170 (740)
+..+..++.++|++|.+...- ....+.+.++|++.++++-- .... +..++..+++|++||||+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 344566666666666654211 11234555666666666531 1111 2234556778888888888664
Q ss_pred CCCCc---cccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCC
Q 045323 171 ENISS---SPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIF 247 (740)
Q Consensus 171 ~~i~~---~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 247 (740)
...+. ..+..+..|++|.+.+|.+.. .....++. .|..|. .
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~--------------------------al~~l~-~-------- 149 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGR--------------------------ALFELA-V-------- 149 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHH--------------------------HHHHHH-H--------
Confidence 32222 134557778888888887641 11110000 011111 0
Q ss_pred ChhhcCCCCCCEEEcCCCCCCCCCCh---hHHhcCCCCCEEEccCCccccc----CCCCCCCCCCCCEEEccCCcccccC
Q 045323 248 PKFLYHQHDLEYVDLSHLNLTREFPN---WLLEKNKKLKRLSLVNISLFGP----FPLPIHCHKNLRVLDVSNNKLQGHI 320 (740)
Q Consensus 248 ~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~ 320 (740)
......-+.|+++...+|++.+.... ..+...+.|+++.+..|.+... ....+..+++|+.||+.+|.++...
T Consensus 150 ~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 150 NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 00011223555555555555432211 1233445566666665554221 1234566777777777777666333
Q ss_pred chhhhh---cCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcC----cccccCCCCCCeeecCCCc
Q 045323 321 PIEIGE---VLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL----FSKEFNLTKLKRLNLDGNH 393 (740)
Q Consensus 321 ~~~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~ 393 (740)
...+.. .+++|+.+++++|.+.......+.....-..++|+++.+.+|.|+... .......|.|+.|++++|.
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 333222 244566666666666544443333322222345666666666554211 1122234555555555555
Q ss_pred c
Q 045323 394 F 394 (740)
Q Consensus 394 ~ 394 (740)
+
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 5
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-10 Score=103.97 Aligned_cols=108 Identities=25% Similarity=0.376 Sum_probs=41.6
Q ss_pred ccCCCccEEEcccCcccccChhhhh-cCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCccc-ccCCcC
Q 045323 614 QPLHSMSGLDLSCNKLIGEIPLQIG-ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRL-IELNAL 691 (740)
Q Consensus 614 ~~~~~L~~L~ls~n~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L 691 (740)
.++..+++|++++|.|+. + +.+. .+.+|+.|+|++|+++.. +++..++.|++|++++|+|+ .+++.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 344578999999999973 3 3455 578999999999999943 35788999999999999998 455455 468999
Q ss_pred ceeeccCcccccCCC-CcccCCCCccccccccCCCC
Q 045323 692 AVFSVAFNNLSGKTP-DRVAQFGTFEEDSYEGNPFL 726 (740)
Q Consensus 692 ~~L~ls~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~ 726 (740)
+.|++++|++..... ..++.+++|+.|++.|||..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 999999999976533 33567889999999999984
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.6e-11 Score=115.97 Aligned_cols=206 Identities=27% Similarity=0.286 Sum_probs=87.4
Q ss_pred CCCCEEEccCCcccccCC-CCCCCCCCCCEEEccCCcccccCc-hhhhhcCCCCcEEeccCCcccccCCCCccCcCcccc
Q 045323 280 KKLKRLSLVNISLFGPFP-LPIHCHKNLRVLDVSNNKLQGHIP-IEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357 (740)
Q Consensus 280 ~~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 357 (740)
++|+++.|.++.+..... .....+++++.||++.|-+....+ ..+...+|+|+.|+++.|.+......... ..+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~----~~l 196 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT----LLL 196 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch----hhh
Confidence 344444444444322111 233445556666666655442222 12333456666666666655421111100 012
Q ss_pred CCccEEEccCCCCCC-cCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCC-CcCCCCCCCCCEE
Q 045323 358 FYLEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNI-PTRLGNLSFLDAI 435 (740)
Q Consensus 358 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L 435 (740)
++|+.|.++.|.++- ........+|+|+.|++.+|............+..|+.|++++|.+.... ....+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 245555555555542 11122234555555555555321111112233345555555555544211 1233445555555
Q ss_pred eCCCCcCcCC-chhh-----hcCCCCCCEEECCCCcCc--ccCCCCCCCCcccEEEcCCCcc
Q 045323 436 MMPNNRLEGP-IPSA-----FCQLRHLEILDLSRNNIS--GSLPSCSSPFNIRRVHLSKNML 489 (740)
Q Consensus 436 ~l~~n~~~~~-~~~~-----l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~L~l~~n~i 489 (740)
+++.|.+... .|+. ...+++|++|++..|++. ..+......++|+.|.+..|.+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 5555544321 1111 234455666666665553 1122222244444444444444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-11 Score=114.95 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=51.9
Q ss_pred ccCCCccEEEcccCccccc----ChhhhhcCCCCcEEECcCCcCcccCCccc-----cCCCCCCEEeCCCCccCc----c
Q 045323 614 QPLHSMSGLDLSCNKLIGE----IPLQIGELSRIHTLNLSHNNLTGESPVTF-----SHMKQVESLDLSYNNLNG----K 680 (740)
Q Consensus 614 ~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~----~ 680 (740)
..+++|+.|||++|.++.+ +.+.++.+++|+.|+++.|.+.......| ...++|+.|.+.+|.|+. .
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 3445666666666666433 23445556667777777776664433222 235677777777777762 2
Q ss_pred CCcccccCCcCceeeccCccc
Q 045323 681 IPPRLIELNALAVFSVAFNNL 701 (740)
Q Consensus 681 ~~~~l~~l~~L~~L~ls~N~l 701 (740)
+..++...+.|+.|+|++|.+
T Consensus 290 la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcchhhHHhcCCcccc
Confidence 233444567777777777777
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-10 Score=121.60 Aligned_cols=226 Identities=23% Similarity=0.252 Sum_probs=118.2
Q ss_pred CCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCC
Q 045323 426 LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSN 505 (740)
Q Consensus 426 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 505 (740)
+..+.+|+.+++.+|.+..+ ...+..+++|++|++++|.|+ .+.....++.|+.|++++|.|+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~N~i~~~------------- 155 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSGNLISDI------------- 155 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccchhhccchhhheeccCcchhc-------------
Confidence 44444555555555554422 111445566666666666665 333334444466666666665421
Q ss_pred CCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccch
Q 045323 506 IPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLP 584 (740)
Q Consensus 506 ~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 584 (740)
..+..+++|+.+++++|.+....+ . ...+.+++.+++.+|.+...-. +..+.
T Consensus 156 --~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~------------------------~~~~~ 208 (414)
T KOG0531|consen 156 --SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG------------------------LDLLK 208 (414)
T ss_pred --cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc------------------------hHHHH
Confidence 224446777777777777764333 2 4566777777777776642110 00011
Q ss_pred hhHHhhhcccccceeeeeeeccccceeecccCC--CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCcccc
Q 045323 585 QLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLH--SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFS 662 (740)
Q Consensus 585 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 662 (740)
.+..+....+.+..+ ....... .|+.+++++|.+. ..+..+..+..+..|++.+|++.. -..+.
T Consensus 209 ~l~~~~l~~n~i~~~-----------~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~ 274 (414)
T KOG0531|consen 209 KLVLLSLLDNKISKL-----------EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLE 274 (414)
T ss_pred HHHHhhcccccceec-----------cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc--ccccc
Confidence 111111111111110 0011111 2677778887776 443556677777888888777763 22344
Q ss_pred CCCCCCEEeCCCCccCcc---CCc-ccccCCcCceeeccCcccccCCCC
Q 045323 663 HMKQVESLDLSYNNLNGK---IPP-RLIELNALAVFSVAFNNLSGKTPD 707 (740)
Q Consensus 663 ~l~~L~~L~Ls~n~l~~~---~~~-~l~~l~~L~~L~ls~N~l~~~~~~ 707 (740)
..+.+..+....|.+... ... .....+.++...+.+|+.....+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 556666777777776521 111 144556777778888877665553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-09 Score=80.39 Aligned_cols=59 Identities=37% Similarity=0.547 Sum_probs=28.8
Q ss_pred CCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcc
Q 045323 642 RIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 642 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 700 (740)
+|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555554444444444445555555555555544444444455555555555544
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-09 Score=78.31 Aligned_cols=61 Identities=44% Similarity=0.585 Sum_probs=57.4
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l 677 (740)
++|+.|++++|++....+..|..+++|++|++++|.++...+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999977778999999999999999999999999999999999999999986
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-10 Score=118.98 Aligned_cols=117 Identities=24% Similarity=0.284 Sum_probs=92.2
Q ss_pred eecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCc
Q 045323 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNA 690 (740)
Q Consensus 611 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 690 (740)
..++.++.++.||||+|+++.. +.+..++.|++|||++|.++...--....+. |+.|.|++|-++.. .+++++.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 3456678999999999999733 3789999999999999999954444444454 99999999999843 57889999
Q ss_pred CceeeccCcccccCCCC-cccCCCCccccccccCCCCCCcCCC
Q 045323 691 LAVFSVAFNNLSGKTPD-RVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 691 L~~L~ls~N~l~~~~~~-~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
|+.||+++|-+.+...- .+..+.+|..|.|+|||..|...-+
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hR 298 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHR 298 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHH
Confidence 99999999988655332 1345678899999999999976533
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-10 Score=105.78 Aligned_cols=195 Identities=19% Similarity=0.117 Sum_probs=102.5
Q ss_pred CCCEEEccCCccccc-ccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCc-ccccCCccccccCCCccE
Q 045323 134 YLQEVNIDRNNLSGS-LPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNH-FQISISLEPFFNHSKLKF 211 (740)
Q Consensus 134 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~ 211 (740)
.|++|||++..|+.. +...++.|.+|+.|.+.++++.+.|.. .+++-.+|+.|+++.+. ++.....-.+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 356666665555321 222344556666666666665554444 45555566666665543 221111122345555555
Q ss_pred EeCCCcccccc----ccCCCCCCccccEEEecCCCC---CCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCE
Q 045323 212 FDGDIYAEIET----SHSSLTPKFQLTSISLFGHGD---SGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKR 284 (740)
Q Consensus 212 L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 284 (740)
|+++++..... ...... .+|+.|+++|+.- ...+..-...+++|.+|||++|......-...+-.++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 55555322211 111111 2788888888731 11233344578889999998875432222222347788888
Q ss_pred EEccCCccccc-CCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCc
Q 045323 285 LSLVNISLFGP-FPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLV 332 (740)
Q Consensus 285 L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~ 332 (740)
|.++.|..... .-..+...|.|.+|++.++--. .-.+.+...+++|+
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd-t~mel~~e~~~~lk 390 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD-TTMELLKEMLSHLK 390 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEeccccCc-hHHHHHHHhCcccc
Confidence 88888864321 1233556678888888776433 22333333345544
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-09 Score=114.45 Aligned_cols=246 Identities=25% Similarity=0.249 Sum_probs=130.0
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.++.+.++.|.+.. ....+..+.+|+.|++.+|.+..... .+..+++|++|++++|.|+.. ..+..++.|+.|++.
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 45555566555553 11224445566666666666553322 134455666666666666533 334445556666666
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCC-CCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCc
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS-CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLR 517 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~ 517 (740)
+|.+... ..+..++.|+.+++++|.+...-+. ...+.+++.+++.+|.+.. ...+..+..+.
T Consensus 149 ~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~---------------i~~~~~~~~l~ 211 (414)
T KOG0531|consen 149 GNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE---------------IEGLDLLKKLV 211 (414)
T ss_pred cCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc---------------ccchHHHHHHH
Confidence 6655422 2233455566666666655522221 2334455555555554431 11122233333
Q ss_pred EEecccCcccccCCccccCCC--CCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccc
Q 045323 518 YLILANNGLEGEMPLQLCWLN--KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHN 595 (740)
Q Consensus 518 ~L~ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 595 (740)
.+++..|.++...+ +..+. +|+.+++++|++.
T Consensus 212 ~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-------------------------------------------- 245 (414)
T KOG0531|consen 212 LLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-------------------------------------------- 245 (414)
T ss_pred HhhcccccceeccC--cccchhHHHHHHhcccCccc--------------------------------------------
Confidence 33445554442211 11111 2455555555443
Q ss_pred cceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCccc---CCc-cccCCCCCCEEe
Q 045323 596 HKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE---SPV-TFSHMKQVESLD 671 (740)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~---~~~-~l~~l~~L~~L~ 671 (740)
... ..+..+..+..+++++|++.. -..+.....+..+.+..|.+... ... ..+..+.++...
T Consensus 246 --~~~----------~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 246 --RSP----------EGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred --ccc----------ccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 210 233456688999999999863 23456678888888888876632 222 246778999999
Q ss_pred CCCCccCccCCccc
Q 045323 672 LSYNNLNGKIPPRL 685 (740)
Q Consensus 672 Ls~n~l~~~~~~~l 685 (740)
+..|.+....+...
T Consensus 312 ~~~~~~~~~~~~~~ 325 (414)
T KOG0531|consen 312 LELNPIRKISSLDL 325 (414)
T ss_pred cccCcccccccccH
Confidence 99999986555433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.5e-09 Score=117.59 Aligned_cols=89 Identities=25% Similarity=0.319 Sum_probs=67.2
Q ss_pred hhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCC
Q 045323 102 QMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNL 181 (740)
Q Consensus 102 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l 181 (740)
..|..++.|++|||++|.-.+.+|. .++.+.+||+|+++++.+. .+|..+++++.|.+|++..+.....++. ....+
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L 641 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLEL 641 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhc
Confidence 3466688888888887765556775 7888888888888888887 6788888888888888888765443433 45558
Q ss_pred CCCCEEeccCCc
Q 045323 182 TYIEELWLSNNH 193 (740)
Q Consensus 182 ~~L~~L~l~~n~ 193 (740)
++||+|.+....
T Consensus 642 ~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 642 QSLRVLRLPRSA 653 (889)
T ss_pred ccccEEEeeccc
Confidence 888888876654
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-07 Score=108.61 Aligned_cols=276 Identities=21% Similarity=0.223 Sum_probs=143.4
Q ss_pred CCccEEEccCCC--CCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEE
Q 045323 358 FYLEYLVLSNNS--LQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAI 435 (740)
Q Consensus 358 ~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 435 (740)
+.|++|-+..|. +.......|..++.|+.||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356666666664 33333344556677777777776655566766777777777777777776 666777777777777
Q ss_pred eCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCC---CCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCC
Q 045323 436 MMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP---SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNR 512 (740)
Q Consensus 436 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~ 512 (740)
++..+......+.....+++|++|.+..-....... ....+.+|+.+....... .+-..+..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---------------~~~e~l~~ 688 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---------------LLLEDLLG 688 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---------------HhHhhhhh
Confidence 777665544445555567777777765543211111 112233333333322211 00001112
Q ss_pred CCCCc----EEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhc-cchhhH
Q 045323 513 LPQLR----YLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILY-QLPQLQ 587 (740)
Q Consensus 513 ~~~L~----~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~L~ 587 (740)
++.|. .+.+.++... ..+..+..+.+|+.|.+.+|.+............ .. .++.+.
T Consensus 689 ~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~-----------------~~~~f~~l~ 750 (889)
T KOG4658|consen 689 MTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLI-----------------VLLCFPNLS 750 (889)
T ss_pred hHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccc-----------------hhhhHHHHH
Confidence 22222 2222222222 3445567788999999999987532222111111 01 122333
Q ss_pred HhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCccc-CCccccCCCC
Q 045323 588 ILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE-SPVTFSHMKQ 666 (740)
Q Consensus 588 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~ 666 (740)
........... ........++|+.|.+.++.....+......+..+..+-+..+.+.+. .-...+.+++
T Consensus 751 ~~~~~~~~~~r----------~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 751 KVSILNCHMLR----------DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred HHHhhcccccc----------ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCce
Confidence 32221111100 001113456888888888876655555556666677666666666654 2444455555
Q ss_pred CCEEeCCCCcc
Q 045323 667 VESLDLSYNNL 677 (740)
Q Consensus 667 L~~L~Ls~n~l 677 (740)
+..+.+++=.+
T Consensus 821 i~~~~l~~~~l 831 (889)
T KOG4658|consen 821 LYWLPLSFLKL 831 (889)
T ss_pred eEecccCccch
Confidence 55555544443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-09 Score=100.69 Aligned_cols=181 Identities=21% Similarity=0.084 Sum_probs=89.0
Q ss_pred CCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCc-ccccCchhhhhcCCCCcEE
Q 045323 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNK-LQGHIPIEIGEVLPNLVVL 334 (740)
Q Consensus 256 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L 334 (740)
.|+++||++..++..-...+...+.+|+.|.+.++.+.+.+...+.+..+|+.|+++.+. ++......++..+..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666666544444445566667777777666665555556666667777776653 4433333444456667777
Q ss_pred eccCCcccccCC-CCccCcCccccCCccEEEccCCCC--CC-cCcccccCCCCCCeeecCCCcc-eecCCcCCCCCCCCc
Q 045323 335 NVATNAFNGSIP-SSFGNTWPWGCFYLEYLVLSNNSL--QG-QLFSKEFNLTKLKRLNLDGNHF-IGDIPKTLSNCSALQ 409 (740)
Q Consensus 335 ~l~~n~~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l--~~-~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~l~~~~~L~ 409 (740)
+++.|.+..... ..+.... ++|+.|+++++.- .. ....-...+|+|..||+++|.. +......+..++.|+
T Consensus 266 NlsWc~l~~~~Vtv~V~his----e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHIS----ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred CchHhhccchhhhHHHhhhc----hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 777766543221 1111111 1556666665421 11 1111123455666666665532 211222334455555
Q ss_pred eEeCCCcccc-cCCCcCCCCCCCCCEEeCCCC
Q 045323 410 GLYISDNNIS-GNIPTRLGNLSFLDAIMMPNN 440 (740)
Q Consensus 410 ~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n 440 (740)
+|.++.|..- ....-.+...+.|.+|++.++
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5555555321 011112344455555555544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.2e-09 Score=110.44 Aligned_cols=81 Identities=26% Similarity=0.307 Sum_probs=58.2
Q ss_pred CCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEe
Q 045323 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188 (740)
Q Consensus 109 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~ 188 (740)
.|.+.++++|.+. .+. ..+.-++.|+.|+|++|++++.. .+..|++|++|||++|.+.. +|......+. |+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-heeee
Confidence 4677777888774 333 36777888888888888887543 67788888888888888754 6653344444 88888
Q ss_pred ccCCccc
Q 045323 189 LSNNHFQ 195 (740)
Q Consensus 189 l~~n~~~ 195 (740)
+++|.++
T Consensus 239 lrnN~l~ 245 (1096)
T KOG1859|consen 239 LRNNALT 245 (1096)
T ss_pred ecccHHH
Confidence 8888765
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-07 Score=86.07 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=17.5
Q ss_pred CCCCEEEccCCcccccCchhhhh-----cCCCCcEEeccCCcc
Q 045323 304 KNLRVLDVSNNKLQGHIPIEIGE-----VLPNLVVLNVATNAF 341 (740)
Q Consensus 304 ~~L~~L~l~~~~l~~~~~~~~~~-----~l~~L~~L~l~~n~~ 341 (740)
+.|+.|.+.+|.++......+.. ..|+|..|...+|..
T Consensus 242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 34555666666554333222221 134555555555544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-07 Score=85.10 Aligned_cols=86 Identities=28% Similarity=0.276 Sum_probs=39.0
Q ss_pred cCCCCCEEECCCCCCCCc--cChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCC
Q 045323 106 LMASLKYLSLSNSYLNGT--ILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTY 183 (740)
Q Consensus 106 ~l~~L~~L~Ls~n~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~ 183 (740)
.+++++.+||.+|.|+.- +.. .+.++|+|++|+++.|.+...+...-....+|++|-|.+..+.-.-....+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345555566666555421 111 24455555555555555542221111234455555555554432222223444555
Q ss_pred CCEEeccCC
Q 045323 184 IEELWLSNN 192 (740)
Q Consensus 184 L~~L~l~~n 192 (740)
+++|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 555555554
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.5e-07 Score=76.89 Aligned_cols=110 Identities=21% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCCccEEEcccCcccccChhhhhc-CCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGE-LSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
...|+..++++|.+. ..|..|.. .+.++.|+|++|++. .+|+.+..++.|+.|+++.|++. ..|+-+..+.+|-.|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 345666777777776 45555533 457777777777777 45555777777777777777777 455555557777777
Q ss_pred eccCcccccCCCCcccCCCCcc-ccccccCCCCCCcC
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFE-EDSYEGNPFLCGQP 730 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~-~l~l~~Np~~c~~~ 730 (740)
+..+|.+.-++-+ .-.+++. -+++..+||--+|+
T Consensus 129 ds~~na~~eid~d--l~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 129 DSPENARAEIDVD--LFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cCCCCccccCcHH--HhccccHHHHHhcCCcccccCc
Confidence 7777766533332 2334433 34467777765554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.3e-07 Score=84.51 Aligned_cols=134 Identities=18% Similarity=0.108 Sum_probs=71.0
Q ss_pred hhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhh----
Q 045323 250 FLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIG---- 325 (740)
Q Consensus 250 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~---- 325 (740)
.+++.+.|++|.+++|++.......+. +.|.+| ..+ .....-|.|+.+++..|++. ..+....
T Consensus 115 ~is~~t~l~HL~l~NnGlGp~aG~rig---kal~~l--a~n-------KKaa~kp~Le~vicgrNRle-ngs~~~~a~~l 181 (388)
T COG5238 115 LISSSTDLVHLKLNNNGLGPIAGGRIG---KALFHL--AYN-------KKAADKPKLEVVICGRNRLE-NGSKELSAALL 181 (388)
T ss_pred HHhcCCCceeEEeecCCCCccchhHHH---HHHHHH--HHH-------hhhccCCCceEEEeccchhc-cCcHHHHHHHH
Confidence 345566788888888876532222111 111111 111 11233467888888888876 4443322
Q ss_pred hcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcC----cccccCCCCCCeeecCCCccee
Q 045323 326 EVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL----FSKEFNLTKLKRLNLDGNHFIG 396 (740)
Q Consensus 326 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~ 396 (740)
..-.+|+.+.+..|.+.......+.-.....+.+|+.||+.+|.++... ...+...+.|+.|.+.+|-++.
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 2224778888888876533222222222223557777777777666322 2233445566777777765543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-07 Score=92.18 Aligned_cols=278 Identities=18% Similarity=0.086 Sum_probs=131.4
Q ss_pred CCCCCCcEEeCCCCCCcCcccchhc-ccCCCCCEEECCCCC-CCCccChhhhcCCCCCCEEEccCCc-cccc-ccccCcC
Q 045323 80 LNFKNLEYFNMDFCTAFSNSFLQMS-ELMASLKYLSLSNSY-LNGTILDQGLCELVYLQEVNIDRNN-LSGS-LPWCLAN 155 (740)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~ 155 (740)
.++++++.|.+.++..+++.....+ ..++.|++|++..|. ++..........+++|++|++++|. |++. +...+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 4566666666665555555444333 356777777776643 2211111123456777777777764 3321 1222345
Q ss_pred CCCCCEEEcCCCCCCCCCCcccc----CCCCCCCEEeccCCc-ccccCCccccccCCCccEEeCCCccccccccCCCCCC
Q 045323 156 LTYLRLLDVSFNQLTENISSSPL----MNLTYIEELWLSNNH-FQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPK 230 (740)
Q Consensus 156 l~~L~~L~l~~n~l~~~i~~~~l----~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 230 (740)
+..++.+.+.+|.- .+...+ ..+.-+..+++..+. +++.-. +..-..+
T Consensus 241 ~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~------------------------~~i~~~c 293 (483)
T KOG4341|consen 241 CKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLTDEDL------------------------WLIACGC 293 (483)
T ss_pred chhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccccchHH------------------------HHHhhhh
Confidence 55666666565521 111111 223334444444442 111100 0011122
Q ss_pred ccccEEEecCCCCCCCC--ChhhcCCCCCCEEEcCCCC-CCCCCChhHHhcCCCCCEEEccCCccccc--CCCCCCCCCC
Q 045323 231 FQLTSISLFGHGDSGIF--PKFLYHQHDLEYVDLSHLN-LTREFPNWLLEKNKKLKRLSLVNISLFGP--FPLPIHCHKN 305 (740)
Q Consensus 231 ~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~ 305 (740)
..|+.+..+++...+.. ..--.+.++|+.|.++.|+ +++..-..+..+.+.|+.+++.++..... +...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 34555555555332211 1112345677777777765 33222233334566777777777654322 2222345677
Q ss_pred CCEEEccCCccc-ccC---chhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCC-CCcCcccc-c
Q 045323 306 LRVLDVSNNKLQ-GHI---PIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSL-QGQLFSKE-F 379 (740)
Q Consensus 306 L~~L~l~~~~l~-~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~-~ 379 (740)
|+.+.++.|... +.. -......+..|..+.+++++.... ..+..+. .|++|+.+++-++.- +......+ .
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le~l~--~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD--ATLEHLS--ICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH--HHHHHHh--hCcccceeeeechhhhhhhhhHHHHh
Confidence 777777776432 110 011112355677788888775421 1111111 255788877777632 22221222 2
Q ss_pred CCCCCCeee
Q 045323 380 NLTKLKRLN 388 (740)
Q Consensus 380 ~l~~L~~L~ 388 (740)
.+|+++...
T Consensus 450 ~lp~i~v~a 458 (483)
T KOG4341|consen 450 HLPNIKVHA 458 (483)
T ss_pred hCccceehh
Confidence 456555443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-06 Score=96.77 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=24.6
Q ss_pred CCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccC
Q 045323 254 QHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN 289 (740)
Q Consensus 254 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~ 289 (740)
+|+|+.||.+++.+...+.+.+...-++|+.+..-+
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred CccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 568888888888777666666555566666655443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.7e-06 Score=80.49 Aligned_cols=105 Identities=22% Similarity=0.196 Sum_probs=60.7
Q ss_pred CCCEEEccCCcccccc-cccC-cCCCCCCEEEcCCCCCCC--CCCccccCCCCCCCEEeccCCcccccCCccccccCCCc
Q 045323 134 YLQEVNIDRNNLSGSL-PWCL-ANLTYLRLLDVSFNQLTE--NISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKL 209 (740)
Q Consensus 134 ~L~~L~L~~n~l~~~~-~~~l-~~l~~L~~L~l~~n~l~~--~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 209 (740)
-+.-|-+.++.|.... ...| ..++.++.+||.+|++++ +|.. .+.++|.|+.|+++.|.+...+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~---------- 114 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIK---------- 114 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccc----------
Confidence 4455666666664321 1223 356788889999998875 2332 45778888889888888753221
Q ss_pred cEEeCCCccccccccCCC-CCCccccEEEecCCCCCC-CCChhhcCCCCCCEEEcCCC
Q 045323 210 KFFDGDIYAEIETSHSSL-TPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVDLSHL 265 (740)
Q Consensus 210 ~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~ 265 (740)
.+ .+..+|+.|-+.|..+.= ..-..+..+|.+++|+++.|
T Consensus 115 ----------------~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 115 ----------------SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ----------------cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 11 344466677666664321 12233445555555555555
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.9e-07 Score=91.07 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCCCCCeeecCCCccee-cCCcCCCCCCCCceEeCCCcc
Q 045323 380 NLTKLKRLNLDGNHFIG-DIPKTLSNCSALQGLYISDNN 417 (740)
Q Consensus 380 ~l~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~ 417 (740)
....++.+.+++++.+. ..-+.+..+++|+.+++.+++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34556666666665432 233445566677776666653
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6e-07 Score=74.74 Aligned_cols=105 Identities=21% Similarity=0.284 Sum_probs=65.7
Q ss_pred CccEEEcccCcccccChhh---hhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 618 SMSGLDLSCNKLIGEIPLQ---IGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~---l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
.+..+|+++|++- -+++. +.....|+..+|++|.+....+..-...+..+.|++++|.|+ .+|+.+..++.|+.+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3455677777653 33333 344466666677777777333333333456777777777777 566667777777777
Q ss_pred eccCcccccCCCCcccCCCCccccccccCCC
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
+++.|++... |+.+..+.++-+|+.-+|..
T Consensus 106 Nl~~N~l~~~-p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 106 NLRFNPLNAE-PRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccccCccccc-hHHHHHHHhHHHhcCCCCcc
Confidence 7777777755 44455566666666666543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.8e-06 Score=55.08 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=15.7
Q ss_pred CCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 642 RIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 642 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
+|++|+|++|+++. +|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34455555555542 2223444455555555555444
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.1e-05 Score=67.62 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
.+...+||++|.+. .++ .|..++.|.+|.+.+|.|+.+.|.--..+++|+.|.+.+|.+..-.....+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 45566777777764 343 467777777777777777766665555667777777777765431111235667777777
Q ss_pred eccCCcccccC--CccccccCCCccEEeCCC
Q 045323 188 WLSNNHFQISI--SLEPFFNHSKLKFFDGDI 216 (740)
Q Consensus 188 ~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~ 216 (740)
.+-+|.++... ..-.+-.+++|+.||+..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777654211 111233455556655544
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.8e-05 Score=51.76 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=16.6
Q ss_pred CCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCccc
Q 045323 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLS 146 (740)
Q Consensus 109 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 146 (740)
+|++|++++|+|+ .++. .++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCC
Confidence 4455555555554 3442 3455555555555555444
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.3e-06 Score=90.35 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=74.6
Q ss_pred CCCCCcEEeCCCCCCcCcccchhcc-cCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCC
Q 045323 81 NFKNLEYFNMDFCTAFSNSFLQMSE-LMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYL 159 (740)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 159 (740)
.-.+|++|++++...+...++..++ .+|+|++|.+++-.+...--.....++++|..||+|+++++.. ..++++++|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 3345666666655555555555554 4677777777665543211011345667777777777777643 556677777
Q ss_pred CEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccC--C---ccccccCCCccEEeCCC
Q 045323 160 RLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISI--S---LEPFFNHSKLKFFDGDI 216 (740)
Q Consensus 160 ~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~--~---~~~~~~l~~L~~L~l~~ 216 (740)
++|.+.+=.+...-.-..+.++++|+.||+|........ . .+.-..+++|++||.++
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 777766655543111124566777777777765433111 0 01112366777777765
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=74.29 Aligned_cols=75 Identities=15% Similarity=0.262 Sum_probs=49.1
Q ss_pred hcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccC-cccc
Q 045323 450 FCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN-GLEG 528 (740)
Q Consensus 450 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~ 528 (740)
+..+..++.|++++|.++ .+| .-+.+|+.|.+++|.-- ..+|..+ .++|+.|++++| .+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP--~LP~sLtsL~Lsnc~nL-------------tsLP~~L--P~nLe~L~Ls~Cs~L~- 108 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP--VLPNELTEITIENCNNL-------------TTLPGSI--PEGLEKLTVCHCPEIS- 108 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC--CCCCCCcEEEccCCCCc-------------ccCCchh--hhhhhheEccCccccc-
Confidence 455789999999999777 445 24668999999876421 1233333 257888888887 443
Q ss_pred cCCccccCCCCCCEEEccCCc
Q 045323 529 EMPLQLCWLNKLQLVDLSHNN 549 (740)
Q Consensus 529 ~~~~~~~~l~~L~~L~l~~n~ 549 (740)
.+| ++|+.|++.++.
T Consensus 109 sLP------~sLe~L~L~~n~ 123 (426)
T PRK15386 109 GLP------ESVRSLEIKGSA 123 (426)
T ss_pred ccc------cccceEEeCCCC
Confidence 233 467777776654
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.1e-05 Score=68.11 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=45.7
Q ss_pred CCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCC-CcccCCCCccccc
Q 045323 641 SRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTP-DRVAQFGTFEEDS 719 (740)
Q Consensus 641 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~-~~~~~~~~l~~l~ 719 (740)
.+...+||+.|++. -...|..++.|.+|.|.+|+|+.+.|..-..+++|+.|.+.+|.+...-. +..+.++.|++|.
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45555666666665 22234556666666666666665444444445566666666665532211 1134556666666
Q ss_pred cccCCC
Q 045323 720 YEGNPF 725 (740)
Q Consensus 720 l~~Np~ 725 (740)
+-|||.
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 666665
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00027 Score=72.39 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=35.6
Q ss_pred CCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCC
Q 045323 476 PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555 (740)
Q Consensus 476 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 555 (740)
+..++.|++++|.++ .+|. --++|++|.+++|.-....|..+ .++|+.|++++|.-...+|
T Consensus 51 ~~~l~~L~Is~c~L~--------------sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIE--------------SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCc--------------ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 567777777777665 3341 12357778877653323445433 2577788887773222344
Q ss_pred c
Q 045323 556 H 556 (740)
Q Consensus 556 ~ 556 (740)
.
T Consensus 112 ~ 112 (426)
T PRK15386 112 E 112 (426)
T ss_pred c
Confidence 3
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00019 Score=67.51 Aligned_cols=93 Identities=24% Similarity=0.337 Sum_probs=64.7
Q ss_pred cccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCC--cccccccccCcCCCCCCEEEcCCCCCCC--CC
Q 045323 98 NSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRN--NLSGSLPWCLANLTYLRLLDVSFNQLTE--NI 173 (740)
Q Consensus 98 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~i 173 (740)
+.+......+..|+.|++.+..++ ++. .|-.+++|++|.++.| .+.+.++.....+++|++|++++|++.. .+
T Consensus 33 g~~~gl~d~~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 334444445667777777777665 333 5778888999999998 6666666666677999999999998753 22
Q ss_pred CccccCCCCCCCEEeccCCccc
Q 045323 174 SSSPLMNLTYIEELWLSNNHFQ 195 (740)
Q Consensus 174 ~~~~l~~l~~L~~L~l~~n~~~ 195 (740)
. .+..+.+|..|++.+|..+
T Consensus 110 ~--pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 R--PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred c--hhhhhcchhhhhcccCCcc
Confidence 2 3566777888888887654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0028 Score=55.18 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=24.3
Q ss_pred cccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCC
Q 045323 377 KEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHL 456 (740)
Q Consensus 377 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 456 (740)
.|..++.++.+.+.+ .+.......|..+++++.+.+..+ +.......|.++ .|+.+.+.. .+..+....|.++++|
T Consensus 53 ~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 53 AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 344444455555543 222233334444555555555433 322333344444 555555543 2232344445555444
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0025 Score=55.55 Aligned_cols=124 Identities=10% Similarity=0.158 Sum_probs=55.1
Q ss_pred cccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhH
Q 045323 508 DWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQ 587 (740)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 587 (740)
..|..+++|+.+.+.. .+.......|..+++|+.+.+.++ +......
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~------------------------------- 52 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN------------------------------- 52 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT-------------------------------
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee-------------------------------
Confidence 4466677788777764 455455566777777887777664 3211111
Q ss_pred HhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCC
Q 045323 588 ILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQV 667 (740)
Q Consensus 588 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 667 (740)
.+..+++++.+.+.+ .+.......|..+++|+.+++..+ ++......|..+ .|
T Consensus 53 ------------------------~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 53 ------------------------AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp ------------------------TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred ------------------------eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 122233566666654 333244445666777777777665 555566666666 77
Q ss_pred CEEeCCCCccCccCCcccccCCcCc
Q 045323 668 ESLDLSYNNLNGKIPPRLIELNALA 692 (740)
Q Consensus 668 ~~L~Ls~n~l~~~~~~~l~~l~~L~ 692 (740)
+.+.+.. .+.......|.++++|+
T Consensus 106 ~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 106 KEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp -EEE-TT-B-SS----GGG------
T ss_pred eEEEECC-CccEECCccccccccCC
Confidence 7777765 44434455666665553
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.00041 Score=76.38 Aligned_cols=64 Identities=22% Similarity=0.097 Sum_probs=31.1
Q ss_pred cCCCCCCEEEccCCc-ccccccccCcC-CCCCCEEEcCCCC-CCCCCCccccCCCCCCCEEeccCCc
Q 045323 130 CELVYLQEVNIDRNN-LSGSLPWCLAN-LTYLRLLDVSFNQ-LTENISSSPLMNLTYIEELWLSNNH 193 (740)
Q Consensus 130 ~~l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~-l~~~i~~~~l~~l~~L~~L~l~~n~ 193 (740)
..+++|+.|+++++. +++..-..++. |++|++|.+.++. +++..-......++.|++|+++.+.
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 344556666666655 44333333332 5566666655554 3332222123345556666666554
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0048 Score=41.40 Aligned_cols=28 Identities=32% Similarity=0.732 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhc-----------CC-C--CCCccccceEec
Q 045323 10 EQEGYALLKLKHD-----------FF-N--NHCCQWACVECN 37 (740)
Q Consensus 10 ~~~~~~~~~~~~~-----------~~-~--~~~c~~~~~~c~ 37 (740)
++|..||++||+. |. . .+||.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5789999999988 77 3 699999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0002 Score=67.56 Aligned_cols=80 Identities=33% Similarity=0.413 Sum_probs=42.2
Q ss_pred CCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC
Q 045323 452 QLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP 531 (740)
Q Consensus 452 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 531 (740)
.++.|++|.|+-|+|+ .+..+..|..|++|++..|.|.+. .--..+.++|+|+.|+|..|.-.+..+
T Consensus 39 kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN~I~sl------------dEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKNCIESL------------DELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcccceeEEeeccccc-cchhHHHHHHHHHHHHHhcccccH------------HHHHHHhcCchhhhHhhccCCcccccc
Confidence 4455555555555554 334444455555555555554321 011335667777777777776554332
Q ss_pred c-----cccCCCCCCEEE
Q 045323 532 L-----QLCWLNKLQLVD 544 (740)
Q Consensus 532 ~-----~~~~l~~L~~L~ 544 (740)
. .+..+|+|+.||
T Consensus 106 ~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 106 QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHHHHHHHHcccchhcc
Confidence 1 244567777665
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.00069 Score=74.59 Aligned_cols=189 Identities=19% Similarity=0.105 Sum_probs=85.1
Q ss_pred CCCCCEEEcCCCCCCCC-CChhHHhcCCCCCEEEccCC-cccccC----CCCCCCCCCCCEEEccCCc-ccccCchhhhh
Q 045323 254 QHDLEYVDLSHLNLTRE-FPNWLLEKNKKLKRLSLVNI-SLFGPF----PLPIHCHKNLRVLDVSNNK-LQGHIPIEIGE 326 (740)
Q Consensus 254 l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~L~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~ 326 (740)
++.|+.+.+.++.-... .-..+...++.|++|+++++ ...... ......+++|+.|+++.+. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666666532212 11223345666777776652 111111 1123344666677776665 55444444444
Q ss_pred cCCCCcEEeccCCc-ccccCCCCccCcCccccCCccEEEccCCCCC-Cc-CcccccCCCCCCeeecCCCcceecCCcCCC
Q 045323 327 VLPNLVVLNVATNA-FNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQ-GQ-LFSKEFNLTKLKRLNLDGNHFIGDIPKTLS 403 (740)
Q Consensus 327 ~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 403 (740)
.+++|+.|.+.+|. +++..-..+.. .|+.|++|+++++... +. .......+++++.+.+....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~----~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------- 332 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAE----RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------- 332 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHH----hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------
Confidence 46677777666665 33322222221 2445666666665432 11 11112234444444332221
Q ss_pred CCCCCceEeCCCcccc---cCCCcCCCCCCCCCEEeCCCCcCcCCc-hhhhcCCCCC
Q 045323 404 NCSALQGLYISDNNIS---GNIPTRLGNLSFLDAIMMPNNRLEGPI-PSAFCQLRHL 456 (740)
Q Consensus 404 ~~~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L 456 (740)
.++.++.+.+...... .........+++++.+.+..+...... ...+.+|+.|
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 1233444443333221 111223445666666666665533222 2344455555
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.004 Score=58.85 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=73.3
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCC--cCcccCCccccCCCCCCEEeCCCCccCcc-CCcccccCCcCc
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHN--NLTGESPVTFSHMKQVESLDLSYNNLNGK-IPPRLIELNALA 692 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~ 692 (740)
+..|+.+.+.+..++ --..|..+++|++|.++.| ++.+-.+.....+++|+.|++++|+|... --+.+..+.+|.
T Consensus 42 ~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 456777777777775 2235677899999999999 55555555556679999999999998731 112345677888
Q ss_pred eeeccCcccccCCC---CcccCCCCcccccccc
Q 045323 693 VFSVAFNNLSGKTP---DRVAQFGTFEEDSYEG 722 (740)
Q Consensus 693 ~L~ls~N~l~~~~~---~~~~~~~~l~~l~l~~ 722 (740)
.|++.+|.-+.... ..|..+++|++++-..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 99999997766433 3356668888877544
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.00025 Score=66.88 Aligned_cols=80 Identities=25% Similarity=0.257 Sum_probs=33.7
Q ss_pred CCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEe
Q 045323 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188 (740)
Q Consensus 109 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~ 188 (740)
+.+.|++-+|.++ .|. ...+++.|+.|.|+-|+|+...| +..|++|++|.|+.|.|.+.-...-+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3444444444443 222 23444445555555444443222 444445555555544443311111234444444444
Q ss_pred ccCCc
Q 045323 189 LSNNH 193 (740)
Q Consensus 189 l~~n~ 193 (740)
|..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 44444
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.016 Score=32.21 Aligned_cols=7 Identities=86% Similarity=0.880 Sum_probs=2.5
Q ss_pred EeCCCCc
Q 045323 670 LDLSYNN 676 (740)
Q Consensus 670 L~Ls~n~ 676 (740)
|||++|+
T Consensus 5 Ldls~n~ 11 (22)
T PF00560_consen 5 LDLSGNN 11 (22)
T ss_dssp EEETSSE
T ss_pred EECCCCc
Confidence 3333333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.025 Score=31.42 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=5.0
Q ss_pred CCEEEccCCccc
Q 045323 135 LQEVNIDRNNLS 146 (740)
Q Consensus 135 L~~L~L~~n~l~ 146 (740)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.019 Score=52.15 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=62.9
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcC-cccCCcccc-CCCCCCEEeCCCC-ccCccCCcccccCCcCcee
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNL-TGESPVTFS-HMKQVESLDLSYN-NLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L 694 (740)
.++.+|-++..|..+..+.+.+++.++.|.+.++.- .+.--+.++ ..++|+.|++++| +|+...-.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 578899999999988888999999999999998852 221112222 3478999999988 6776666778888889888
Q ss_pred eccCcc
Q 045323 695 SVAFNN 700 (740)
Q Consensus 695 ~ls~N~ 700 (740)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 877543
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.0012 Score=70.52 Aligned_cols=61 Identities=31% Similarity=0.410 Sum_probs=35.8
Q ss_pred ccEEEcccCccccc----ChhhhhcC-CCCcEEECcCCcCcccC----CccccCCCCCCEEeCCCCccCc
Q 045323 619 MSGLDLSCNKLIGE----IPLQIGEL-SRIHTLNLSHNNLTGES----PVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 619 L~~L~ls~n~l~~~----~~~~l~~l-~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
+..+++.+|.+.+. ....+..+ ..+++++++.|.+++.. ...+..++.++++.+++|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 45577777776533 12233334 55677777777776532 3444555667777777777663
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.11 Score=26.66 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=3.2
Q ss_pred CCEEeCCCCcc
Q 045323 667 VESLDLSYNNL 677 (740)
Q Consensus 667 L~~L~Ls~n~l 677 (740)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33344444433
|
... |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.18 Score=29.34 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=10.4
Q ss_pred CcCceeeccCcccccCCCCc
Q 045323 689 NALAVFSVAFNNLSGKTPDR 708 (740)
Q Consensus 689 ~~L~~L~ls~N~l~~~~~~~ 708 (740)
++|+.|++++|++..+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555554443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.18 Score=29.34 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=10.4
Q ss_pred CcCceeeccCcccccCCCCc
Q 045323 689 NALAVFSVAFNNLSGKTPDR 708 (740)
Q Consensus 689 ~~L~~L~ls~N~l~~~~~~~ 708 (740)
++|+.|++++|++..+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555554443
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.0033 Score=67.28 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=17.6
Q ss_pred CCEEEcCCCCCCCCCChhHH---hcCCCCCEEEccCCcc
Q 045323 257 LEYVDLSHLNLTREFPNWLL---EKNKKLKRLSLVNISL 292 (740)
Q Consensus 257 L~~L~L~~~~~~~~~~~~~~---~~~~~L~~L~L~~~~~ 292 (740)
+..+.+.+|.+.......+. ...+.|+.|++++|.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l 127 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNL 127 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCC
Confidence 66667777776654333322 1233444444444443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.29 Score=28.44 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=6.0
Q ss_pred CCCEEeCCCCccC
Q 045323 666 QVESLDLSYNNLN 678 (740)
Q Consensus 666 ~L~~L~Ls~n~l~ 678 (740)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.29 Score=28.44 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=6.0
Q ss_pred CCCEEeCCCCccC
Q 045323 666 QVESLDLSYNNLN 678 (740)
Q Consensus 666 ~L~~L~Ls~n~l~ 678 (740)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.26 E-value=0.023 Score=52.57 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=39.8
Q ss_pred hhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCcc
Q 045323 637 IGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFE 716 (740)
Q Consensus 637 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~ 716 (740)
+......+.||++.|++.. .-..|+-++.|..||++.|.+. ..|..+..+..+..+++..|..+.. |..++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhC-CccccccCCcc
Confidence 3334444555555554442 2222334444555555555554 4444444444455555555544433 33345555555
Q ss_pred ccccccCC
Q 045323 717 EDSYEGNP 724 (740)
Q Consensus 717 ~l~l~~Np 724 (740)
++++-+||
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55555554
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.24 E-value=0.027 Score=52.14 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=72.7
Q ss_pred cCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 615 PLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
.+...+.||++.|++. ..-..|.-++.|..|+++.|++. -.|..++....+..+++.+|..+ ..|-++...++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 4457788999999986 55666888899999999999998 77888888888999999999998 678889999999999
Q ss_pred eccCcccc
Q 045323 695 SVAFNNLS 702 (740)
Q Consensus 695 ~ls~N~l~ 702 (740)
++-.|++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99999864
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=83.33 E-value=0.46 Score=26.94 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=8.9
Q ss_pred CCccEEEcccCcccccChh
Q 045323 617 HSMSGLDLSCNKLIGEIPL 635 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~ 635 (740)
++|+.|++++|++.+..+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 3555666666665544333
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.16 E-value=0.55 Score=42.98 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=48.8
Q ss_pred CceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcc-cCCCCCEEECCCCC
Q 045323 41 GKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSE-LMASLKYLSLSNSY 119 (740)
Q Consensus 41 ~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~ 119 (740)
..|+.+|-++..|..+|. ..+.+++. |+.|.+..|..+.+--.+.++ -.++|+.|++++|.
T Consensus 101 ~~IeaVDAsds~I~~eGl-----e~L~~l~~-------------i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGL-----EHLRDLRS-------------IKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred ceEEEEecCCchHHHHHH-----HHHhccch-------------hhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 468899999887744332 12233333 333333333444433223332 35899999999886
Q ss_pred -CCCccChhhhcCCCCCCEEEccCC
Q 045323 120 -LNGTILDQGLCELVYLQEVNIDRN 143 (740)
Q Consensus 120 -~~~~~~~~~~~~l~~L~~L~L~~n 143 (740)
|+ .-.-..+.++++|+.|.+.+=
T Consensus 163 rIT-~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 163 RIT-DGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred eec-hhHHHHHHHhhhhHHHHhcCc
Confidence 43 222235778888998888764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 740 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-48 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 7e-13 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-48 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 8e-13 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-13 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 4e-04 | ||
| 3cig_A | 697 | Crystal Structure Of Mouse Tlr3 Ectodomain Length = | 1e-04 | ||
| 3j0a_A | 844 | Homology Model Of Human Toll-Like Receptor 5 Fitted | 1e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697 | Back alignment and structure |
|
| >pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 479 bits (1234), Expect = e-159
Identities = 210/786 (26%), Positives = 333/786 (42%), Gaps = 91/786 (11%)
Query: 7 GCLEQEGYALLKLKHDFFNN----------HCCQWACVECNTTTGKVISLDLDGTRKLGD 56
L +E + L+ K + + C + V C KV S+DL L
Sbjct: 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKP-LNV 64
Query: 57 GEGYLNASLFTSFQQLELLDLS----------ILNFKNLEYFNMDFCTAFSNSFLQMSEL 106
G +++SL S LE L LS +L ++ + S ++ L
Sbjct: 65 GFSAVSSSLL-SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN-SLSGPVTTLTSL 122
Query: 107 --MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLA---NLTYLRL 161
+ LK+L++S++ L+ G +L L+ +++ N++SG+ L+
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 162 LDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD-------G 214
L +S N+++ ++ + +E L +S+N+F I + S L+ D G
Sbjct: 183 LAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSG 237
Query: 215 DIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNW 274
D I S+ T +L +++ + G P L+Y+ L+ T E P++
Sbjct: 238 DFSRAI----STCT---ELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFTGEIPDF 288
Query: 275 LLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVL 334
L L L L +G P L L +S+N G +P++ + L VL
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 335 NVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFN--LTKLKRLNLDGN 392
+++ N F+G +P S N L L LS+N+ G + L+ L L N
Sbjct: 349 DLSFNEFSGELPESLTNLSA----SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 393 HFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQ 452
F G IP TLSNCS L L++S N +SG IP+ LG+LS L + + N LEG IP
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 453 LRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN-MLQGPLLGDLSYNRLNSNIPDWMN 511
++ LE L L N+++G +PS LS L + LS NRL IP W+
Sbjct: 465 VKTLETLILDFNDLTGEIPSG----------LSNCTNLN--WI-SLSNNRLTGEIPKWIG 511
Query: 512 RLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHD 571
RL L L L+NN G +P +L L +DL+ N +G IP ++ S +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF-- 569
Query: 572 LFDQDPQILYQLPQLQILYTNYHNHK-------YLTNFTTKQRLYT----------YEVQ 614
+ + + + + + + L +T+
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 615 PLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674
SM LD+S N L G IP +IG + + LNL HN+++G P ++ + LDLS
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 675 NNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKS 734
N L+G+IP + L L ++ NNLSG P+ QF TF + NP LCG PL +
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748
Query: 735 CNENGP 740
N
Sbjct: 749 DPSNAD 754
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 3e-69
Identities = 136/689 (19%), Positives = 225/689 (32%), Gaps = 100/689 (14%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L A+ FT + QL LD+ LE ++ LK L+L ++ L
Sbjct: 40 LPAANFTRYSQLTSLDVGFNTISKLE----------PELCQKLP----MLKVLNLQHNEL 85
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
+ + D+ L E+++ N++ L LD+S N L+ +
Sbjct: 86 SQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQ 143
Query: 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFG 240
L ++EL LSNN Q ++ E + L + L
Sbjct: 144 LENLQELLLSNNKIQ-ALKSEEL----------------------DIFANSSLKKLELSS 180
Query: 241 HGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLE--KNKKLKRLSLVNISLFGPFPL 298
+ P + L + L+++ L L N ++ LSL N L
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 299 PIH--CHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWG 356
NL +LD+S N L LP L + N S
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHG----- 294
Query: 357 CFYLEYLVLSNNSLQGQLFSKEF---------NLTKLKRLNLDGNHFIGDIPKTLSNCSA 407
F + YL L + + + L L+ LN++ N G +
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354
Query: 408 LQGLYISDNNISGNIPTRLG----NLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSR 463
L+ L +S++ S T S L + + N++ AF L HLE+LDL
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414
Query: 464 NNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILAN 523
N I L + LSYN+ + +P L+ L+L
Sbjct: 415 NEIGQELTGQEWRGLENIFEI-----------YLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 524 NGLEG--EMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILY 581
L+ P L L ++DLS+NN++ L
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG--------------------- 502
Query: 582 QLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELS 641
L +L+IL HN+ Y ++ L + L+L N +L
Sbjct: 503 -LEKLEILDLQ-HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560
Query: 642 RIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNALAVFSVAFNN 700
+ ++L NNL F++ ++SL+L N + L + FN
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620
Query: 701 LSGKTPDRVAQFGTFEEDSYEGNPFLCGQ 729
T + +A F + +++ P L
Sbjct: 621 FDC-TCESIAWFVNWINETHTNIPELSSH 648
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 1e-65
Identities = 132/690 (19%), Positives = 220/690 (31%), Gaps = 104/690 (15%)
Query: 71 QLELLDLSILN--------FKNLEYFNMDFC---TAFSNSFLQMSELMASLKYLSLSNSY 119
E+ D S L N+ N+ + +F + S L L + +
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYS----QLTSLDVGFNT 60
Query: 120 LNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLM 179
++ + + +L L+ +N+ N LS A T L L + N + + I ++P +
Sbjct: 61 ISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFV 118
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD--GDIYAEIETSHSSLTPKFQLTSIS 237
+ L LS+N S L L+ + +++ + L +
Sbjct: 119 KQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 238 LFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLE--KNKKLKRLSLVNISLFGP 295
L + P + L + L+++ L L N ++ LSL N L
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
Query: 296 FPLPIH--CHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTW 353
NL +LD+S N L LP L + N S
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHG-- 294
Query: 354 PWGCFYLEYLVLSNNSLQGQLFSKEF---------NLTKLKRLNLDGNHFIGDIPKTLSN 404
F + YL L + + + L L+ LN++ N G +
Sbjct: 295 ---LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 405 CSALQGLYISDNNISGNIPTRLG----NLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460
L+ L +S++ S T S L + + N++ AF L HLE+LD
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411
Query: 461 LSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLI 520
L N I L + LSYN+ + +P L+ L+
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEI-----------YLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 521 LANNGLEG--EMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQ 578
L L+ P L L ++DLS+NN++ L
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG------------------ 502
Query: 579 ILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIG 638
L +L+IL HN+ L L + G +
Sbjct: 503 ----LEKLEILDLQ-HNN--LAR----------------------LWKHANPGGPIYFLK 533
Query: 639 ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAF 698
LS +H LNL N F + +++ +DL NNLN +L ++
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 699 NNLSGKTPDRVAQFGTFEEDSY-EGNPFLC 727
N ++ + NPF C
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDC 623
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 3e-58
Identities = 107/585 (18%), Positives = 197/585 (33%), Gaps = 86/585 (14%)
Query: 133 VYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNN 192
V + + L+ +P L T + +L+++ NQL + ++ + + L + N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59
Query: 193 HFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLY 252
S + P+
Sbjct: 60 TI-------------------------------------------------SKLEPELCQ 70
Query: 253 HQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVS 312
L+ ++L H N + + L L L++ S+ P KNL LD+S
Sbjct: 71 KLPMLKVLNLQH-NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129
Query: 313 NNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQG 372
+N L + L NL L ++ N + L+ L LS+N ++
Sbjct: 130 HNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDI---FANSSLKKLELSSNQIKE 185
Query: 373 QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLS---NCSALQGLYISDNNISGNIPTRLGNL 429
+ +L L L+ + + L ++++ L +S++ +S T L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245
Query: 430 SF--LDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSC-SSPFNIRRVHLSK 486
+ L + + N L +F L LE L NNI FN+R ++L +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305
Query: 487 NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLS 546
+ + +S L L L +L + +N + G L L+ + LS
Sbjct: 306 SFTK----QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361
Query: 547 HNNLSGQ--IPHCLYNISFNYRE-----DNHDLFDQDPQILYQLPQLQILYTNYHNHKYL 599
++ S + +++ + N + + L L++L L
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVL--------DL 412
Query: 600 TNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG--ES 657
Q L E + L ++ + LS NK + + + L L L S
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472
Query: 658 PVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702
P F ++ + LDLS NN+ L L L + + NNL+
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 3e-45
Identities = 83/419 (19%), Positives = 143/419 (34%), Gaps = 64/419 (15%)
Query: 302 CHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLE 361
C + V D S+ KL +P ++ N+ VLN+ N ++F L
Sbjct: 2 CTVSHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTR-----YSQLT 52
Query: 362 YLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG 420
L + N++ L + L LK LNL N KT + C+ L L++ N+I
Sbjct: 53 SLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111
Query: 421 NIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIR 480
L + + +N L QL +L+ L LS N I F
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171
Query: 481 R-VHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW--- 536
L +LS N++ P + + +L L L N L + +LC
Sbjct: 172 SLKKL-----------ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220
Query: 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596
++ + LS++ LS + + L +L +Y+N
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGL--------------------KWTNLTMLDLSYNNL 260
Query: 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHN----- 651
+ N + L + L N + + L + LNL +
Sbjct: 261 NVVGNDS---------FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311
Query: 652 ----NLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706
+L +F +K +E L++ N++ G L L S++ + S +T
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 73/389 (18%), Positives = 136/389 (34%), Gaps = 52/389 (13%)
Query: 64 SLFTSFQQL-ELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNG 122
S L ++ D S K LE+ NM+ M + +LKYLSLSNS+ +
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSL 367
Query: 123 TILDQGLCE---LVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLM 179
L L +N+ +N +S + L +L +LD+ N++ + ++
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239
L I E++LS N + ++ F L+ + +L
Sbjct: 428 GLENIFEIYLSYNKYL-QLTRNSFALVPSLQ--------RLMLRRVALK----------- 467
Query: 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL------- 292
+ P +L +DLS+ N+ + +LE +KL+ L L + +L
Sbjct: 468 ---NVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHA 523
Query: 293 -FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGN 351
G + +L +L++ +N + L L ++++ N N S F N
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD-LFELKIIDLGLNNLNTLPASVFNN 582
Query: 352 TWPWGCFYLEYLVLSNNSLQG---QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSAL 408
L+ L L N + ++F L L++ N F + +
Sbjct: 583 -----QVSLKSLNLQKNLITSVEKKVFGP--AFRNLTELDMRFNPFDCTCESIAWFVNWI 635
Query: 409 QGLYISDNNISGNI----PTRLGNLSFLD 433
+ + +S + P
Sbjct: 636 NETHTNIPELSSHYLCNTPPHYHGFPVRL 664
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 7/145 (4%)
Query: 60 YLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSY 119
+N + ++LE+LDL N L A + + ++ L L+L ++
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKH------ANPGGPIYFLKGLSHLHILNLESNG 547
Query: 120 LNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLM 179
+ I + +L L+ +++ NNL+ N L+ L++ N +T
Sbjct: 548 FDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 180 NLTYIEELWLSNNHFQISISLEPFF 204
+ EL + N F + +F
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWF 631
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 5e-59
Identities = 83/596 (13%), Positives = 179/596 (30%), Gaps = 82/596 (13%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSP---LMNLTYIEELWLSN 191
+ ++++ SG +P + LT L +L + + N + E+
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 192 NHFQISI-SLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKF 250
H+Q + +P + S L + + ++ S + T I + + + K
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKA 201
Query: 251 LYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLD 310
+ L + + E E + + L K+L ++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWEN------ENSEYAQQYKTEDLKWDNLKDLTDVE 255
Query: 311 VSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG--SIPSSFGN-TWPWGCFYLEYLVLSN 367
V N +P + LP + ++NVA N + + ++ + +
Sbjct: 256 VYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314
Query: 368 NSLQ-GQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRL 426
N+L+ + + + KL L N G +P + L L ++ N I+
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFC 373
Query: 427 GNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLS 485
G ++ + +N+L+ P + + +D S N I P L
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP-------LD 426
Query: 486 KNMLQGPLLG--DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEG-------EMPLQLCW 536
+G + +LS N+++ + + L + L N L +
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 537 LNKLQLVDLSHNNLSGQIPHCLY----------NISFNYREDNHDLFDQDPQILYQLPQL 586
L +DL N L+ + ++S+N F + P L
Sbjct: 487 TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN-------SFSKFPTQPLNSSTL 538
Query: 587 QILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTL 646
+ D N+ + E P I + L
Sbjct: 539 KGFGIRNQ---------------------------RDAQGNRTLREWPEGITLCPSLTQL 571
Query: 647 NLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702
+ N++ + ++ LD+ N + ++ + ++
Sbjct: 572 QIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 7e-51
Identities = 93/650 (14%), Positives = 195/650 (30%), Gaps = 106/650 (16%)
Query: 24 FNNHCCQWA---CVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSIL 80
FN W V N+ G+V L L+G G + ++ +LE+L L
Sbjct: 62 FNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGA----SGRVPDAIG-QLTELEVLALGSH 115
Query: 81 NFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQ-GLCELVYLQEVN 139
K E + S + + T +D + L +
Sbjct: 116 GEKVNE----------RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165
Query: 140 IDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISIS 199
I+ + S+ + N +T +S + +M LT + + ++ N+ F ++
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPF---VA 220
Query: 200 LEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEY 259
Y + +L LT + ++ + P FL +++
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLK---DLTDVEVYNCPNLTKLPTFLKALPEMQL 277
Query: 260 VDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQ-G 318
++++ S + + ++++ + N L+
Sbjct: 278 INVACNRGI-----------------SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320
Query: 319 HIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQG---QLF 375
+ + + + L +L N G +P+ FG+ L L L+ N +
Sbjct: 321 PVETSLQK-MKKLGMLECLYNQLEGKLPA-FGS-----EIKLASLNLAYNQITEIPANFC 373
Query: 376 SKEFNLTKLKRLNLDGNHFIGDIPKTLS--NCSALQGLYISDNNISG-------NIPTRL 426
+++ L+ N + IP + S + + S N I +
Sbjct: 374 G---FTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429
Query: 427 GNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSK 486
+ +I + NN++ F L ++L N ++ + N +
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489
Query: 487 -NMLQGPLLGDLSYNRLNSNIPDW-MNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVD 544
+ DL +N+L D+ LP L + L+ N P Q + L+
Sbjct: 490 LTSI------DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542
Query: 545 LSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTT 604
+ + + N + P+ + P L L N
Sbjct: 543 IRNQR----------DAQGNR------TLREWPEGITLCPSLTQLQIG-SN--------- 576
Query: 605 KQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLT 654
+ + ++S LD+ N I + L ++
Sbjct: 577 --DIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 6e-45
Identities = 68/475 (14%), Positives = 152/475 (32%), Gaps = 70/475 (14%)
Query: 263 SHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPI 322
L++ P L N ++ LSL G P I L VL + ++ + + +
Sbjct: 64 KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123
Query: 323 EIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLT 382
+ + + + L ++++ Q +
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183
Query: 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG-------------------NIP 423
K ++ N+ + K + + L+ Y+ ++
Sbjct: 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVH 483
+ NL L + + N +P+ L +++++++ N +
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302
Query: 484 LSKNMLQGPLLGDLSYNRLNS-NIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542
+ + +Q ++ + YN L + + + ++ +L L N LEG++P KL
Sbjct: 303 VGEK-IQ--II-YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357
Query: 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNF 602
++L++N ++ IP Q++ L HN L
Sbjct: 358 LNLAYNQITE-IP---------------------ANFCGFTEQVENLS-FAHNK--LKYI 392
Query: 603 TTKQRLYTYEVQPLHSMSGLDLSCNKL-------IGEIPLQIGELSRIHTLNLSHNNLTG 655
++ + + MS +D S N++ + + + ++NLS+N ++
Sbjct: 393 PN-----IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
Query: 656 ESPVTFSHMKQVESLDLSYNNLNG-------KIPPRLIELNALAVFSVAFNNLSG 703
FS + S++L N L L + FN L+
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-30
Identities = 58/442 (13%), Positives = 133/442 (30%), Gaps = 98/442 (22%)
Query: 45 SLDLDGTRKLGDGEGYLNASLFTSF---QQLELLDLSILNFKNLEYFNMDFCTAFSNSFL 101
+++ R + + + ++++++ + N K S
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP---------VETSLQ 327
Query: 102 QMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRL 161
+M L L + L G + + L +N+ N ++ +
Sbjct: 328 KMK----KLGMLECLYNQLEGKL--PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381
Query: 162 LDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIE 221
L + N+L + +++ + + S N
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN----------------------------- 412
Query: 222 TSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKK 281
++ S+ + + ++ ++LS+ +++ FP L
Sbjct: 413 ----------EIGSVD---GKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSP 458
Query: 282 LKRLSL-------VNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEV-LPNLVV 333
L ++L + + L +D+ NKL + + LP LV
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVG 517
Query: 334 LNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNH 393
++++ N+F+ P+ N L+ + N + GN
Sbjct: 518 IDLSYNSFSK-FPTQPLN-----SSTLKGFGIRNQ------------------RDAQGNR 553
Query: 394 FIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQL 453
+ + P+ ++ C +L L I N+I N+S LD + +N S C
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD---IKDNPNISIDLSYVCPY 610
Query: 454 RHLEILDLSRNNISGSLPSCSS 475
+ L + + C +
Sbjct: 611 IEAGMYMLFYDKTQ-DIRGCDA 631
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-28
Identities = 48/329 (14%), Positives = 112/329 (34%), Gaps = 37/329 (11%)
Query: 388 NLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGP-- 445
N + + + +L++ + GL + SG +P +G L+ L+ + + ++ +
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 446 --IPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLN 503
P E R + + + L K+ ++ +
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS--DLIKD--------CINSDPQQ 172
Query: 504 SNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISF 563
+I + + +N + + + L KL+ + ++ + +
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231
Query: 564 NYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLD 623
+ + + + L L + +N LT T ++ L M ++
Sbjct: 232 S---EYAQQYKTEDLKWDNLKDLTDVE--VYNCPNLTKLPT-------FLKALPEMQLIN 279
Query: 624 LSCNKLI--------GEIPLQIGELSRIHTLNLSHNNL-TGESPVTFSHMKQVESLDLSY 674
++CN+ I + +I + + +NNL T + MK++ L+ Y
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339
Query: 675 NNLNGKIPPRLIELNALAVFSVAFNNLSG 703
N L G P LA ++A+N ++
Sbjct: 340 NQLEG-KLPAFGSEIKLASLNLAYNQITE 367
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 13/136 (9%), Positives = 31/136 (22%), Gaps = 6/136 (4%)
Query: 609 YTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVE 668
+ + + + + + R+ L+L +G P + ++E
Sbjct: 49 QQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELE 108
Query: 669 SLDLSYNNLNG----KIPPRLIELNALAVFSVAFNNLSGKTPDRVA--QFGTFEEDSYEG 722
L L + P + + + D F +D
Sbjct: 109 VLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS 168
Query: 723 NPFLCGQPLLKSCNEN 738
+P
Sbjct: 169 DPQQKSIKKSSRITLK 184
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 2e-56
Identities = 107/613 (17%), Positives = 200/613 (32%), Gaps = 92/613 (15%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
L S K L LS + L + LQ +++ R + +L++L L
Sbjct: 24 DNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETS 223
++ N + +++ L+ +++L + + P + LK + +
Sbjct: 83 LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELN--------VA 132
Query: 224 HSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLK 283
H+ + S P++ + +LE++DLS + + L + L
Sbjct: 133 HNLIQ---------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL----RVLH 173
Query: 284 RLSLVNISL------FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVA 337
++ L+N+SL L L + NN ++ + L L V +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 338 TNAFNGSI---PSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNH 393
F +E L+ F LT + +L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 394 FIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQL 453
S Q L + + +L +L L +G + L
Sbjct: 294 IERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDL 346
Query: 454 RHLEILDLSRNNISGSLPSCSSPFNIRR-VHLSKNMLQGPLLGDLSYNRLNSNIPDWMNR 512
LE LDLSRN +S S F +L DLS+N + + +++
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL-----------DLSFNGVITMSSNFLG- 394
Query: 513 LPQLRYLILANNGLEGEMPLQ-LCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHD 571
L QL +L ++ L+ L L +D+SH +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------- 443
Query: 572 LFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG 631
L L++L + + ++ L +++ LDLS +L
Sbjct: 444 -----------LSSLEVLK--------MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 632 EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIEL-NA 690
P LS + LN+SHNN + + ++ LD S N++ L ++
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 544
Query: 691 LAVFSVAFNNLSG 703
LA ++ N+ +
Sbjct: 545 LAFLNLTQNDFAC 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 3e-52
Identities = 110/643 (17%), Positives = 209/643 (32%), Gaps = 115/643 (17%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L + F SF +L++LDLS + +E ++ +S L L L+ + +
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIE----------DGAYQSLS----HLSTLILTGNPI 88
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
L LQ++ NL+ + + +L L+ L+V+ N + N
Sbjct: 89 QSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYA---EIETSHSSLTPKFQLTSIS 237
LT +E L LS+N Q SI ++ + + + + +L ++
Sbjct: 148 LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 238 LFGHGDSG-IFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKN--KKLKRLSLVNISL-- 292
L + DS + + LE L E +K+ + L L++ L
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 293 ----FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSS 348
+C N+ + + ++ L + F
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLK 323
Query: 349 FGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNH--FIGDIPKTLSNCS 406
+ L+ S +G E +L L+ L+L N F G ++ +
Sbjct: 324 LKS----------LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 407 ALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNN 465
+L+ L +S N + + + L L+ + ++ L+ S F LR+L LD+S +
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 466 ISGSLPSC-SSPFNIRRVHLSKNMLQGPLLG------------DLSYNRLNSNIPDWMNR 512
+ + ++ + ++ N Q L DLS +L P N
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 513 LPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDL 572
L L+ L +++N LN LQ++D S N++
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK------------------ 534
Query: 573 FDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE 632
Q L P S++ L+L+ N
Sbjct: 535 ----KQELQHFPS--------------------------------SLAFLNLTQNDFACT 558
Query: 633 IPLQ--IGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLS 673
Q + + L + + +P V SL+++
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPSDK-QGMPVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 12/158 (7%)
Query: 59 GYLNASLFTSFQQLELLDLS-----------ILNFKNLEYFNMDFCTAFSNSFLQMSELM 107
S+F S + L LD+S +LE M + N + +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFN 167
+L +L LS L L LQ +N+ NN + L L++LD S N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 168 QLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFN 205
+ + + + L L+ N F + + F
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 16/86 (18%), Positives = 28/86 (32%)
Query: 622 LDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681
LDLS N L + L+LS + + + + +L L+ N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 682 PPRLIELNALAVFSVAFNNLSGKTPD 707
L++L NL+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENF 118
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 632 EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691
+IP + L+LS N L +F +++ LDLS + L+ L
Sbjct: 21 KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 692 AVFSVAFNNLSGKTPD 707
+ + N +
Sbjct: 79 STLILTGNPIQSLALG 94
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 2e-52
Identities = 85/376 (22%), Positives = 137/376 (36%), Gaps = 101/376 (26%)
Query: 365 LSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIG--DIPKTLSNCSALQGLYISD-NNISGN 421
N + G L + ++ L+L G + IP +L+N L LYI NN+ G
Sbjct: 33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 422 IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRR 481
IP + L+ L + + + + G IP Q++ L LD S N +SG+LP S ++
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--PSISSLPN 150
Query: 482 -VHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQL-RYLILANNGLEGEMPLQLCWLNK 539
V + NR++ IPD +L + ++ N L G++P LN
Sbjct: 151 LVGI-----------TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198
Query: 540 LQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYL 599
L VDLS N L G + Q +
Sbjct: 199 LAFVDLSRNMLEGDASVLFGS----------------------DKNTQKI---------- 226
Query: 600 TNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPV 659
L+ N L ++ ++G ++ L+L +N + G P
Sbjct: 227 -----------------------HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 660 TFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDS 719
+ +K + SL++S+NNL G+IP F+ +
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQGGN-------------------------LQRFDVSA 297
Query: 720 YEGNPFLCGQPLLKSC 735
Y N LCG P L +C
Sbjct: 298 YANNKCLCGSP-LPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 3e-52
Identities = 77/272 (28%), Positives = 112/272 (41%), Gaps = 26/272 (9%)
Query: 289 NISLFGPFPLPIHCHKNLRVLDVSNNKLQG--HIPIEIGEVLPNLVVLNVA-TNAFNGSI 345
N + G + LD+S L IP + LP L L + N G I
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPI 93
Query: 346 PSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNC 405
P + L YL +++ ++ G + + L L+ N G +P ++S+
Sbjct: 94 PPAIAK-----LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 406 SALQGLYISDNNISGNIPTRLGNLSFLDAIM-MPNNRLEGPIPSAFCQLRHLEILDLSRN 464
L G+ N ISG IP G+ S L M + NRL G IP F L +L +DLSRN
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207
Query: 465 NISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILAN 523
+ G S N +++HL+KN L + L L L N
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFD-------------LGKVGL-SKNLNGLDLRN 253
Query: 524 NGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555
N + G +P L L L +++S NNL G+IP
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 1e-50
Identities = 74/341 (21%), Positives = 124/341 (36%), Gaps = 77/341 (22%)
Query: 339 NAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL-FSKEF-NLTKLKRLNL-DGNHFI 395
+ G + + + + L LS +L NL L L + N+ +
Sbjct: 36 RTWLGVLCDTDTQ-----TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 396 GDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH 455
G IP ++ + L LYI+ N+SG IP L + L + N L G +P + L +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 456 LEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQ 515
L + N ISG++P S + L +M +S NRL IP L
Sbjct: 151 LVGITFDGNRISGAIP--DSYGSFS--KLFTSM-------TISRNRLTGKIPPTFANL-N 198
Query: 516 LRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQ 575
L ++ L+ N LEG+ + Q + L+ N+L+ +
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK------------------- 239
Query: 576 DPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPL 635
+ L L DL N++ G +P
Sbjct: 240 ----VGLSKNLNGL---------------------------------DLRNNRIYGTLPQ 262
Query: 636 QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676
+ +L +H+LN+S NNL GE P ++++ + + N
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 1e-41
Identities = 74/338 (21%), Positives = 119/338 (35%), Gaps = 64/338 (18%)
Query: 142 RNNLSGSLPWCLANLTYLRLLDVSFNQL--TENISSSPLMNLTYIEELWLSN-NHFQISI 198
G L + LD+S L I SS L NL Y+ L++ N+
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNL---- 89
Query: 199 SLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLE 258
G P + L
Sbjct: 90 ---------------------------------------------VGPIPPAIAKLTQLH 104
Query: 259 YVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQG 318
Y+ ++H N++ P++L + K L L +L G P I NL + N++ G
Sbjct: 105 YLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 319 HIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE 378
IP G + ++ N G IP +F N L ++ LS N L+G
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------LNLAFVDLSRNMLEGDASVLF 217
Query: 379 FNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438
+ ++++L N D+ K + L GL + +N I G +P L L FL ++ +
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNI--SGSLPSCS 474
N L G IP L+ ++ + N LP+C+
Sbjct: 277 FNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPACT 313
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 73/358 (20%), Positives = 124/358 (34%), Gaps = 86/358 (24%)
Query: 6 EGCLEQEGYALLKLKHDFFN----------NHCCQ--WACVECNTTT--GKVISLDLDGT 51
E C Q+ ALL++K D N CC W V C+T T +V +LDL G
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 52 RKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLK 111
+ +SL + L L + +N A + + L
Sbjct: 61 N--LPKPYPIPSSLA-NLPYLNFLYIGGIN-----NLVGPIPPAIAK--------LTQLH 104
Query: 112 YLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTE 171
YL ++++ ++G I D L ++ L ++ N LSG+LP +++L L + N+++
Sbjct: 105 YLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 172 NISSSPLMNLTY-IEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPK 230
I S + + + +S N G I
Sbjct: 164 AIPDS-YGSFSKLFTSMTISRNRLT------------------GKIPPTFA--------N 196
Query: 231 FQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNI 290
L + L + G + + + L+ +L + +
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-------------KVGLS 243
Query: 291 SLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSS 348
KNL LD+ NN++ G +P + + L L LNV+ N G IP
Sbjct: 244 -------------KNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG 287
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 4e-21
Identities = 40/216 (18%), Positives = 69/216 (31%), Gaps = 59/216 (27%)
Query: 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM--PLQLCWLNKLQLVDLSH-NNLSG 552
D + D + ++ L L+ L P L L L + + NNL G
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91
Query: 553 QIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYE 612
IP + L QL
Sbjct: 92 PIPPAIAK----------------------LTQLHY------------------------ 105
Query: 613 VQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672
L ++ + G IP + ++ + TL+ S+N L+G P + S + + +
Sbjct: 106 ---------LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 673 SYNNLNGKIPPRLIELNALAVF-SVAFNNLSGKTPD 707
N ++G IP + L +++ N L+GK P
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 107 MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSF 166
+ + + L+ + L + + L +++ N + G+LP L L +L L+VSF
Sbjct: 220 DKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 167 NQLTENISSSPLMNLTYIEELWLSNN 192
N L I NL + +NN
Sbjct: 278 NNLCGEIPQGG--NLQRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 620 SGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGES--PVTFSHMKQVESLDLS-YNN 676
D +G + + R++ L+LS NL P + +++ + L + NN
Sbjct: 29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88
Query: 677 LNGKIPPRLIELNALAVFSVAFNNLSGKTPD 707
L G IPP + +L L + N+SG PD
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 3e-51
Identities = 87/630 (13%), Positives = 179/630 (28%), Gaps = 112/630 (17%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNN-- 192
+ +++ G +P + LT L++L + T + LT +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384
Query: 193 --HFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKF 250
+ ++ + + N S L + E++ + T I + + I K
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKA 443
Query: 251 LYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLD 310
+ L+ + ++ T + + + L K+L ++
Sbjct: 444 IQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 311 VSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG---------SIPSSFGNTWPWGCFYLE 361
+ N +P + + LP L LN+A N + ++
Sbjct: 498 LYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDT-----GPKIQ 551
Query: 362 YLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG 420
+ N+L+ S + KL L+ N + + L L + N I
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIEE 609
Query: 421 NIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
++ + +N+L+ P + + +D S N I + S +
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 480 RR-VHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLE-------GEMP 531
+ ++ S LSYN + + + +IL+NN +
Sbjct: 670 YKGINASTV--------TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721
Query: 532 LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYT 591
L +DL N L+ + + LP L
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTS-LS---DDFRAT-----------------TLPYLSN--- 757
Query: 592 NYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH- 650
+D+S N P Q S++ + H
Sbjct: 758 ------------------------------MDVSYNCF-SSFPTQPLNSSQLKAFGIRHQ 786
Query: 651 -----NNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKT 705
N + + P + + L + N++ K+ +L L + +A N
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISID 843
Query: 706 PDRVAQFGTFEEDS--YEGNPFLCGQPLLK 733
V + Y+ + G L
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 3e-40
Identities = 86/684 (12%), Positives = 185/684 (27%), Gaps = 152/684 (22%)
Query: 24 FNNHCCQWACVECNT--TTGKVISLDLDGTRKLGDGEG-----------YLNASLFTSFQ 70
FN W G+V L L G G T
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 71 QLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLC 130
+L + + + + FL + + L + + +
Sbjct: 364 RLFGDEELTPDMSEERKHRIR--MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421
Query: 131 ELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLS 190
+ + N + + LT L+++ + + T + + +
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA-----NSDY 476
Query: 191 NNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKF 250
++ E S S+L LT + L+ + P F
Sbjct: 477 AKQYEN-----------------------EELSWSNLK---DLTDVELYNCPNMTQLPDF 510
Query: 251 LYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLD 310
LY +L+ ++++ + RL +++
Sbjct: 511 LYDLPELQSLNIACNRGIS-----AAQLKADWTRL-----------ADDEDTGPKIQIFY 554
Query: 311 VSNNKLQGHIPIEIG-EVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNS 369
+ N L+ P + + L +L+ N +FG L L L N
Sbjct: 555 MGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGT-----NVKLTDLKLDYNQ 606
Query: 370 LQG---QLFSKEFNLTKLKRLNLDGNHFIGDIPKT--LSNCSALQGLYISDNNISGNIPT 424
++ + +++ L N + IP + + + S N I
Sbjct: 607 IEEIPEDFCA---FTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662
Query: 425 --------RLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSP 476
+ N S + + N ++ F + + LS N ++ S+P S
Sbjct: 663 ISCSMDDYKGINASTVT---LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK 718
Query: 477 FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPD--WMNRLPQLRYLILANNGLEGEMPLQL 534
+ + + DL +N+L S + D LP L + ++ N P Q
Sbjct: 719 PKDGNYKNTYLLTT--I--DLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQP 772
Query: 535 CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYH 594
++L+ + H + + + + Q P + P L
Sbjct: 773 LNSSQLKAFGIRHQRDA----------------EGNRILRQWPTGITTCPSLIQ------ 810
Query: 595 NHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLT 654
L + N + ++ ++ +++ L+++ N
Sbjct: 811 ---------------------------LQIGSNDI-RKVDEKL--TPQLYILDIADNPNI 840
Query: 655 GESPVTFSHMKQVESLDLSYNNLN 678
+ + L Y+
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 1e-38
Identities = 68/457 (14%), Positives = 141/457 (30%), Gaps = 36/457 (7%)
Query: 263 SHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPI 322
L++ + P L+ N ++ LSL G P I L+VL + +
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
Query: 323 EIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLT 382
E L + L ++ N +
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425
Query: 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRL 442
K ++ N I I K + + LQ +Y +++ + + + D +
Sbjct: 426 KDTQIGNLTNR-ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD-----YAKQ 479
Query: 443 EGPIPSAFCQLRHLEILDLSRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNR 501
++ L+ L ++L LP ++ ++++ N +
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT- 538
Query: 502 LNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPH--CL 558
+ D + P+++ + N LE L + KL L+D HN + +
Sbjct: 539 ---RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTN 594
Query: 559 YNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHS 618
++ + N + + Q++ L + HN L + + ++
Sbjct: 595 VKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFS-HNK--LKYIPN-----IFNAKSVYV 645
Query: 619 MSGLDLSCNKLIGEIP-----LQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLS 673
M +D S NK+ E + + T+ LS+N + F+ + ++ LS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705
Query: 674 YNNL-------NGKIPPRLIELNALAVFSVAFNNLSG 703
N + L + FN L+
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 2e-37
Identities = 65/483 (13%), Positives = 136/483 (28%), Gaps = 73/483 (15%)
Query: 64 SLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGT 123
+ ++ + +I L+ +NS + + + +
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYF------ANSPFTYDNIAVDWEDANSDYAKQYE- 481
Query: 124 ILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSP------ 177
+ L L +V + LP L +L L+ L+++ N+
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541
Query: 178 --LMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTS 235
I+ ++ N+ + + KL D H+ ++
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD--------CVHN------KVRH 587
Query: 236 ISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFG- 294
+ FG L + L + + E P +++ L + L
Sbjct: 588 LEAFG------------TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634
Query: 295 PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLP-----NLVVLNVATNAFNGSIPSSF 349
P + +D S NK+ I + N + ++ N F
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693
Query: 350 GNTWPWGCFYLEYLVLSNNSLQ-------GQLFSKEFNLTKLKRLNLDGNHFIGDIPKTL 402
+ ++LSNN + N L ++L N + +
Sbjct: 694 AT-----GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDF 747
Query: 403 --SNCSALQGLYISDNNISGNIPTRLGNLSFLDAI------MMPNNRLEGPIPSAFCQLR 454
+ L + +S N S PT+ N S L A NR+ P+
Sbjct: 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806
Query: 455 HLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLP 514
L L + N+I + +P + + ++ N + + ++
Sbjct: 807 SLIQLQIGSNDIR-KVDEKLTP-QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
Query: 515 QLR 517
+R
Sbjct: 865 DIR 867
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-29
Identities = 79/483 (16%), Positives = 147/483 (30%), Gaps = 63/483 (13%)
Query: 274 WLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGH--IPIEIGEVLPN- 330
WL ++ + + S L + V +NKL +PI++ E
Sbjct: 210 WLPAGTYQVVAYTTYSQSGIKRSELETQSVRGE-SFTVIDNKLTKDANVPIQLKETAEYI 268
Query: 331 -----LVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLK 385
L + A + N S N + + Q N ++
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW--NFNKELDMWGDQPGVDLDNNGRVT 326
Query: 386 RLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGP 445
L+L G G +P + + L+ L ++ + + D +R+
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386
Query: 446 IPSAF-CQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNS 504
F + L + DL ++ I+ P R+ L + NR+
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQI------GNLTNRITF 439
Query: 505 NIPDWMNRLPQLRYLILANNGLEG-------------------EMPLQLCWLNKLQLVDL 545
I + RL +L+ + AN+ L L L V+L
Sbjct: 440 -ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498
Query: 546 SHNNLSGQIPHCLYNIS-----------FNYREDNHDLFDQDPQILYQLPQLQILYTNYH 594
+ Q+P LY++ + + P++QI Y +
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG-Y 557
Query: 595 NHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLT 654
N+ L F L Q + + LD NK+ + G ++ L L +N +
Sbjct: 558 NN--LEEFPASASL-----QKMVKLGLLDCVHNKV-RHLEA-FGTNVKLTDLKLDYNQIE 608
Query: 655 GESPVTFSHMKQVESLDLSYNNLNGKIPPR--LIELNALAVFSVAFNNLSGKTPDRVAQF 712
+ QVE L S+N L IP + + ++N + + +
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 713 GTF 715
+
Sbjct: 668 DDY 670
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 3e-49
Identities = 106/631 (16%), Positives = 191/631 (30%), Gaps = 105/631 (16%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
L S + L S + L TI + L+ L +++ R + + L L
Sbjct: 29 GTLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETS 223
++ N L ++ + L ++ L+ SI P N L+
Sbjct: 88 LTANPLI-FMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLE------------- 132
Query: 224 HSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLE-KNKKL 282
S+ L + S I + L+ +D + + + +
Sbjct: 133 -----------SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181
Query: 283 KRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEI-GEVLPNLVVLNVATNAF 341
L+L + G + L+ + I + + +L +
Sbjct: 182 LSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKT 401
P+ F +E + L + + + L+ L+L H + ++P
Sbjct: 241 EDISPAVFEG---LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSG 296
Query: 402 LSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPS-AFCQLRHLEILD 460
L S L+ L +S N N L + + N + + L +L LD
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 461 LSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLI 520
LS ++I S N+ + L +LSYN S + PQL L
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQ----SL------NLSYNEPLSLKTEAFKECPQLELLD 406
Query: 521 LANNGLEG-EMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQI 579
LA L+ + L+ L++++LSH+ L
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG------------------- 447
Query: 580 LYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIG- 638
LP LQ L +L N +
Sbjct: 448 ---LPALQHL---------------------------------NLQGNHFPKGNIQKTNS 471
Query: 639 --ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696
L R+ L LS +L+ F+ +K + +DLS+N L + ++
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIYLNL 530
Query: 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727
A N++S P + + NP C
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 3e-49
Identities = 117/645 (18%), Positives = 200/645 (31%), Gaps = 133/645 (20%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
+ + F+ L LDL+ + ++F L L L+ + L
Sbjct: 48 IQNTTFSRLINLTFLDLTRCQIYWIH----------EDTFQSQH----RLDTLVLTANPL 93
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
+ + L L+ + + +S L N L L + N ++ +I
Sbjct: 94 IF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFP 151
Query: 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFG 240
++ L NN S ++ Q T++SL
Sbjct: 152 TEKLKVLDFQNNAIH-------------------------YLSKEDMSSLQQATNLSL-- 184
Query: 241 HGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPI 300
+L+ ++ P + L L
Sbjct: 185 --------------------NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224
Query: 301 HCHKNLRVLDVSNNKLQGHIPIEI-GEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFY 359
++L + + + P G ++ +N+ + F ++F
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC-----FSG 279
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L+ L L+ L +L S L+ LK+L L N F + SN +L L I N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
+ L +L LDLS ++I S N+
Sbjct: 339 LELG-----------------------TGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 480 RRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEG-EMPLQLCWLN 538
+ L +LSYN S + PQL L LA L+ + L+
Sbjct: 376 SHLQ----SL------NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598
L++++LSH+ L LP LQ L N
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDG----------------------LPALQHLNLQ-GN--- 459
Query: 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESP 658
+F T +Q L + L LS L L ++ ++LSHN LT S
Sbjct: 460 --HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
Query: 659 VTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSG 703
SH+K + L+L+ N+++ +P L L+ ++ N L
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-40
Identities = 86/439 (19%), Positives = 142/439 (32%), Gaps = 51/439 (11%)
Query: 298 LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357
+P + L+ S N L I L NL L++ +F +
Sbjct: 27 IPGTLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-----Q 80
Query: 358 FYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416
L+ LVL+ N L + LK L L N L+ LY+ N
Sbjct: 81 HRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139
Query: 417 NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEI--LDLSRNNISGSLPSCS 474
+IS + L + NN + L+ L+L+ N+I+G P
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199
Query: 475 SPFNIRRVHLSKNMLQGPLL-------------GDLSYNRLNSNIPDWMNRLP--QLRYL 519
+ ++ + G P L + +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259
Query: 520 ILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYN--------ISFNYREDNHD 571
L + + LQ +DL+ +LS ++P L +S N
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK------ 312
Query: 572 LFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL-- 629
+ P L L N K L L T ++ L ++ LDLS + +
Sbjct: 313 FENLCQISASNFPSLTHLS-IKGNTKRLE-------LGTGCLENLENLRELDLSHDDIET 364
Query: 630 IGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-L 688
LQ+ LS + +LNLS+N F Q+E LDL++ L K + L
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424
Query: 689 NALAVFSVAFNNLSGKTPD 707
+ L V +++ + L +
Sbjct: 425 HLLKVLNLSHSLLDISSEQ 443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-37
Identities = 61/408 (14%), Positives = 121/408 (29%), Gaps = 57/408 (13%)
Query: 301 HCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYL 360
+ + + N L IP + + L + N ++F L
Sbjct: 9 IEKEVNKTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSR-----LINL 59
Query: 361 EYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
+L L+ + + F + +L L L N I LS AL+ L+ IS
Sbjct: 60 TFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF-N 478
L N L+++ + +N + L++LD N I S
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178
Query: 479 IRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP--LQLCW 536
+ L +L+ N + + I + L + L+
Sbjct: 179 ATNLSL-----------NLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226
Query: 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596
+ L L + P + ++ + H
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLC--------------------EMSVESINLQKHYF 266
Query: 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE 656
+++ T + LDL+ + E+P + LS + L LS N
Sbjct: 267 FNISSNT---------FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENL 316
Query: 657 SPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNALAVFSVAFNNLSG 703
++ S+ + L + N ++ +E L L ++ +++
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 77/444 (17%), Positives = 153/444 (34%), Gaps = 39/444 (8%)
Query: 60 YLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSY 119
YL+ +S QQ L L+ LN ++ A + L+ +
Sbjct: 167 YLSKEDMSSLQQATNLSLN-LNGNDIAGIEPGAFD------------SAVFQSLNFGGTQ 213
Query: 120 LNGTILDQ-GLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRL--LDVSFNQLTENISSS 176
I + L + + P L + + +++ + NISS+
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSN 272
Query: 177 PLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGD---IYAEIETSHSSLTPKFQL 233
+ ++EL L+ +S S LK + S S+ L
Sbjct: 273 TFHCFSGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP---SL 327
Query: 234 TSISLFGHG-DSGIFPKFLYHQHDLEYVDLSHLNLTR-EFPNWLLEKNKKLKRLSLVNIS 291
T +S+ G+ + L + +L +DLSH ++ + N L L+ L+L
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 292 LFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGN 351
L +LD++ +L+ + L L VLN++ + + S F
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD- 446
Query: 352 TWPWGCFYLEYLVLSNNSLQGQLFSKEF---NLTKLKRLNLDGNHFIGDIPKTLSNCSAL 408
G L++L L N K L +L+ L L ++ +
Sbjct: 447 ----GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502
Query: 409 QGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG 468
+ +S N ++ + L +L + + + +N + +PS L ++L +N +
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
Query: 469 SLPSCSSPFNIRRVHLSKNMLQGP 492
+CS+ + + + L+
Sbjct: 562 ---TCSNIYFLEWYKENMQKLEDT 582
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 1e-47
Identities = 110/608 (18%), Positives = 189/608 (31%), Gaps = 86/608 (14%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
++ +S K + LS + L + LQ +++ R + L +L L
Sbjct: 28 DDIPSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETS 223
++ N + S LT +E L S+ P LK +
Sbjct: 87 LTGNPIQS-FSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVA-------- 136
Query: 224 HSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPN---WLLEKNK 280
+ S L P + + +L +VDLS+ + N +L E +
Sbjct: 137 ------HNFIHSCKL---------PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181
Query: 281 KLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVAT 338
L + I L L + N +I + L L V +
Sbjct: 182 VNLSLDMSLNPIDFIQDQAF---QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238
Query: 339 NAFNGSIPSSFGNTWPWGCF---YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFI 395
F ++ L+ + K L + ++L G I
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-I 297
Query: 396 GDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH 455
+ + Q L I + L L L + N+ I L
Sbjct: 298 KYLED-VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT---LTMNKGS--ISFKKVALPS 351
Query: 456 LEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQ 515
L LDLSRN +S S C S ++ L DLS+N + L +
Sbjct: 352 LSYLDLSRNALSFS--GCCSYSDLGTNSLRHL--------DLSFNGAII-MSANFMGLEE 400
Query: 516 LRYLILANNGLEGEMPLQ-LCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFD 574
L++L ++ L+ L KL +D+S+ N
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-------------- 446
Query: 575 QDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIP 634
L L L ++ K T + +++ LDLS +L
Sbjct: 447 --------LTSLNTLKMAGNSFKDNTL--------SNVFANTTNLTFLDLSKCQLEQISW 490
Query: 635 LQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694
L R+ LN+SHNNL ++ + + +LD S+N + +LA F
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550
Query: 695 SVAFNNLS 702
++ N+++
Sbjct: 551 NLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 6e-45
Identities = 90/529 (17%), Positives = 175/529 (33%), Gaps = 57/529 (10%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L + F++F +L+ LDLS + +E ++ + L L L+ + +
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIE----------DKAWHGLH----HLSNLILTGNPI 92
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
L L+ + L+ + + L L+ L+V+ N + + N
Sbjct: 93 QS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYA---EIETSHSSLTPKFQLTSIS 237
LT + + LS N+ Q +I++ + + + I+ +L ++
Sbjct: 152 LTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210
Query: 238 LFGHGDSGIFPKFLY------HQHDLEYVDLSHLNLTREFPNWLLEKNKKLKR--LSLVN 289
L G+ +S K H H L + F ++E + L
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270
Query: 290 ISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSF 349
+ F + HC N+ + ++ ++ +E L++
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQLKQFPTLDL 327
Query: 350 GNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNH--FIGDIPKTLSNCSA 407
L+ L L+ N + K+ L L L+L N F G + ++
Sbjct: 328 PF--------LKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNNI 466
L+ L +S N + L L + ++ L+ SAF L L LD+S N
Sbjct: 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 467 SGSLPSCSSPF-NIRRVHLSKNMLQGPLLG------------DLSYNRLNSNIPDWMNRL 513
++ + ++ N + L DLS +L + L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 514 PQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562
+L+ L +++N L L L +D S N + +
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 3e-40
Identities = 103/590 (17%), Positives = 176/590 (29%), Gaps = 110/590 (18%)
Query: 138 VNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQIS 197
LS +P + + + +D+SFN L + S N + ++ L LS
Sbjct: 16 YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEI--- 68
Query: 198 ISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDL 257
I K + H L
Sbjct: 69 ----------------------------------------------ETIEDKAWHGLHHL 82
Query: 258 EYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQ 317
+ L+ N + F L+ L V L PI L+ L+V++N +
Sbjct: 83 SNLILTG-NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 318 GHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSK 377
L NLV ++++ N + L +S N + + +
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPID-FIQDQ 199
Query: 378 EFNLTKLKRLNLDGNHFIGDIPKT-LSNCSALQGLYISDNNISGNIPTRLGNLSFLDA-- 434
F KL L L GN +I KT L N + L + + S ++
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259
Query: 435 ------IMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNM 488
+ F L ++ + L+ +I L F + + + +
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQ 318
Query: 489 LQG-PLLG-------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP--LQLCWLN 538
L+ P L L+ N+ + + LP L YL L+ N L N
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTN 376
Query: 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598
L+ +DLS N L +LQ L H+
Sbjct: 377 SLRHLDLSFNGAIIM-----------------------SANFMGLEELQHLDFQ-HST-- 410
Query: 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESP 658
L T L + LD+S + L+ ++TL ++ N+ +
Sbjct: 411 LKRVT-----EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Query: 659 V-TFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPD 707
F++ + LDLS L L+ L + +++ NNL
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 5e-32
Identities = 66/435 (15%), Positives = 127/435 (29%), Gaps = 54/435 (12%)
Query: 64 SLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGT 123
+ F++ L +DLS + + N + E L +S + +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTIT----------VNDLQFLRENPQVNLSLDMSLNPI--D 194
Query: 124 ILDQGLCELVYLQEVNIDRNNLSGSLPW-CLANLTYLRLLDVSFNQLTEN-----ISSSP 177
+ + + L E+ + N S ++ CL NL L + + + + S
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254
Query: 178 LMNLTYIEELWLSNNHFQI-SISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSI 236
+ L + + S + F + + + + F+ S+
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS--LAGVSIKYLEDVPKHFKWQSL 312
Query: 237 SLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEK------------------ 278
S+ L L+ + L+ + F L
Sbjct: 313 SIIRCQLKQFPTLDLPF---LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS 369
Query: 279 -----NKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVV 333
L+ L L + L+ LD ++ L+ L L+
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428
Query: 334 LNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGN 392
L+++ F L L ++ NS + S F N T L L+L
Sbjct: 429 LDISYTNTKIDFDGIFLG-----LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Query: 393 HFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQ 452
LQ L +S NN+ + L L + NR+E
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543
Query: 453 LRHLEILDLSRNNIS 467
+ L +L+ N+++
Sbjct: 544 PKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 34/155 (21%), Positives = 50/155 (32%), Gaps = 13/155 (8%)
Query: 62 NASLFTSFQQLELLDLS-----------ILNFKNLEYFNMDFCTAFSNSFLQMSELMASL 110
S F S ++L LD+S L +L M + N+ + +L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475
Query: 111 KYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLT 170
+L LS L L LQ +N+ NNL L L LD SFN++
Sbjct: 476 TFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 171 ENISSSPLMNLTYIEELWLSNNHFQISISLEPFFN 205
+ L+NN + F
Sbjct: 535 -TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQ 568
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 618 SMSGLDLSC-NKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676
+ + C ++ + ++P I S ++LS N L +FS+ +++ LDLS
Sbjct: 10 VVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67
Query: 677 LNGKIPPRLIELNALAVFSVAFNNLSG 703
+ L+ L+ + N +
Sbjct: 68 IETIEDKAWHGLHHLSNLILTGNPIQS 94
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 4e-40
Identities = 123/620 (19%), Positives = 214/620 (34%), Gaps = 79/620 (12%)
Query: 60 YLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSY 119
+ AS F +QL+LL+L T +F + +L+ L L +S
Sbjct: 38 TVTASSFPFLEQLQLLELG---------SQYTPLTIDKEAFRNLP----NLRILDLGSSK 84
Query: 120 LNGTILDQGLCELVYLQEVNIDRNNLSGSL--PWCLANLTYLRLLDVSFNQLTENISSSP 177
+ + L +L E+ + LS ++ NL L LD+S NQ+
Sbjct: 85 IY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143
Query: 178 LMNLTYIEELWLSNNHFQISISLEPF--FNHSKLKFFD---GDIYAEIETSHSSLTPKFQ 232
L ++ + S+N + L FF +Y+ + F+
Sbjct: 144 FGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 233 LTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL 292
+ + +G + S+ + + +L + NI
Sbjct: 203 NMVLEILDVSGNGW--------TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 293 FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNT 352
++R LD+S+ + + + E L +L VLN+A N N +F
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAF--- 310
Query: 353 WPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGL 411
+G L+ L LS N L +L+S F L K+ ++L NH +T LQ L
Sbjct: 311 --YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367
Query: 412 YISDNNI--------------SGNIPTRLGNLSF-LDAIMMPNNRLEG-PIPSAFCQLRH 455
+ DN + SGN L ++ + I + NRLE I ++ H
Sbjct: 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427
Query: 456 LEILDLSRNNISGSLPS--CSSPFNIRRVHLSKNMLQGPLLG----------------DL 497
L+IL L++N S S ++ ++ L +NMLQ L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487
Query: 498 SYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHC 557
++N LNS P + L LR L L +N L L L+++D+S N L P
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDV 545
Query: 558 LYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLH 617
++S N + + + + + L
Sbjct: 546 FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFS-----GVSLF 600
Query: 618 SMSGLDLSCNKLIGEIPLQI 637
S+S +++ + +
Sbjct: 601 SLSTEGCDEEEVLKSLKFSL 620
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 7e-40
Identities = 102/614 (16%), Positives = 193/614 (31%), Gaps = 99/614 (16%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ + + N + L L+LL++ I NL + L L ++
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
+ + F L L+ D+ + + +
Sbjct: 86 Y-FLHPDAFQGLFHLFELR--------LYFCGLS--------------DAVLKDGYFRNL 122
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVS 312
L +DLS + + + K LK + + I L L K L ++
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 313 NNKLQGHIPIEIGEVL-----PNLVVLNVATNAFNGSIPSSFGNTWPWGCF-------YL 360
N L + ++ G+ + L +L+V+ N + I +F N ++
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 361 EYLVLSNNSLQGQLFS--KEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
++++ + + ++ L+L + L+ L ++ N I
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 419 SGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFN 478
+ L L + + N L S F L + +DL +N+I+
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA----------- 351
Query: 479 IRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLN 538
+ + L +L+ L L +N L + ++
Sbjct: 352 ----IIQDQTFKF---------------------LEKLQTLDLRDNALT-----TIHFIP 381
Query: 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598
+ + LS N L +P + + +N L ++P LQIL N +
Sbjct: 382 SIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440
Query: 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGE-----LSRIHTLNLSHNNL 653
+ T + E L L N L ++ LS + L L+HN L
Sbjct: 441 CSGDQTPSENPSLEQ--------LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492
Query: 654 TGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFG 713
P FSH+ + L L+ N L + + L + ++ N L PD F
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQLLAPNPD---VFV 547
Query: 714 TFEEDSYEGNPFLC 727
+ N F+C
Sbjct: 548 SLSVLDITHNKFIC 561
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-29
Identities = 88/475 (18%), Positives = 163/475 (34%), Gaps = 56/475 (11%)
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
D NLT+ +RL L + + L++L++ +
Sbjct: 4 FDGRIAFYRFCNLTQVPQV-----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL 374
I E LPNL +L++ ++ P +F G F+L L L L +
Sbjct: 59 YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-----QGLFHLFELRLYFCGLSDAV 113
Query: 375 FSKEF--NLTKLKRLNLDGNHFIG-DIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSF 431
+ NL L RL+L N + + ++L+ + S N I L L
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173
Query: 432 --LDAIMMPNNRLEGPIPSAFCQL------RHLEILDLSRNNISGSLPSCSSPFNIRRVH 483
L + N L + + + LEILD+S N + + S +
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 484 LSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQ--LRYLILANNGLEGEMPLQLCWLNKLQ 541
S + + ++ + + L + +R+L L++ + L L+
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 542 LVDLSHNNLSGQIPHCLY--------NISFNYREDNHDLFDQDPQILYQLPQLQILYTNY 593
+++L++N ++ Y N+S+N L + Y LP++ +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNL------LGELYSSNFYGLPKVAYIDLQK 347
Query: 594 HNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNL 653
++ + + T + L + LDL N L I + I + LS N L
Sbjct: 348 NHIAIIQDQTF---------KFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393
Query: 654 TGESPVTFSHMKQVESLDLSYNNLNG-KIPPRLIELNALAVFSVAFNNLSGKTPD 707
+ + + LS N L I L+ + L + + N S + D
Sbjct: 394 VTLPKINLTA----NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 4e-37
Identities = 97/519 (18%), Positives = 186/519 (35%), Gaps = 58/519 (11%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L + F SF +L++LDLS + +E ++ +S L L L+ + +
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIE----------DGAYQSLS----HLSTLILTGNPI 88
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
++ L LQ++ NL+ + + +L L+ L+V+ N + N
Sbjct: 89 Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYA---EIETSHSSLTPKFQLTSIS 237
LT +E L LS+N Q SI ++ + + + + +L ++
Sbjct: 148 LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 238 LFGHGDSGIFPKFLY------HQHDLEYVDLSHLNLTREFPNWLLEK--NKKLKRLSLVN 289
L + DS K H L + + +F LE N ++ L
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 290 ISLFG-PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSS 348
+ + +C N+ + + ++ ++ L + F
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFPTLK 323
Query: 349 FGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGN--HFIGDIPKTLSNCS 406
+ L+ L ++N E +L L+ L+L N F G ++ +
Sbjct: 324 LKS--------LKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 407 ALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNN 465
+L+ L +S N + + + L L+ + ++ L+ S F LR+L LD+S +
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 466 ISGSLPSCSSPF-NIRRVHLSKNMLQGPLLG------------DLSYNRLNSNIPDWMNR 512
+ + ++ + ++ N Q L DLS +L P N
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 513 LPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551
L L+ L +A+N L+ L LQ + L N
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-32
Identities = 75/448 (16%), Positives = 156/448 (34%), Gaps = 54/448 (12%)
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV 364
+ + LD+S N L+ H+ P L VL+++ ++ + +L L+
Sbjct: 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-----SHLSTLI 82
Query: 365 LSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI-SGNI 422
L+ N +Q L F L+ L++L + + + L+ L ++ N I S +
Sbjct: 83 LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 423 PTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEI----LDLSRNNISGSLPSCSSPFN 478
P NL+ L+ + + +N+++ + L + + LDLS N ++ P
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 479 IRRVHLSKNMLQGPLLGDL------------------SYNRLNSNIPDWMNRLPQLRYLI 520
+ ++ L N ++ + L + L L
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 521 LANNGLEG---EMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDP 577
L+ ++ L + L + ++ YN + + E + F Q P
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFP 320
Query: 578 QILYQLPQLQILYTNYHNHKYLTNFT---------------TKQRLYTYEVQPLHSMSGL 622
+ +L L+ L + + + + + S+ L
Sbjct: 321 TL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG-ESPVTFSHMKQVESLDLSYNNLNGKI 681
DLS N +I + L ++ L+ H+NL F ++ + LD+S+ +
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 682 PPRLIELNALAVFSVAFNNLSGKTPDRV 709
L++L V +A N+ +
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDI 465
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-32
Identities = 102/601 (16%), Positives = 188/601 (31%), Gaps = 119/601 (19%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
L S K L LS + L + LQ +++ R + +L++L L
Sbjct: 24 DNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETS 223
++ N + ++ L+ +++L + S+ P + LK E+ +
Sbjct: 83 LTGNPIQS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK--------ELNVA 132
Query: 224 HSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLK 283
H+ + S P++ + +LE++DLS + + L + L
Sbjct: 133 HNLIQ---------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL----RVLH 173
Query: 284 RLSLVNISL------FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVA 337
++ L+N+SL L L + NN ++ + L L V +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 338 TNAFNGS---IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNH 393
F +E L+ F LT + +L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 394 FIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQL 453
I + S Q L + + +L +L L +N+ + L
Sbjct: 294 -IERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAF--SEVDL 346
Query: 454 RHLEILDLSRNNISGSLPSCSSPF----NIRRVHLSKNMLQ---GPLLG-------DLSY 499
LE LDLSRN +S CS +++ + LS N + LG D +
Sbjct: 347 PSLEFLDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 500 NRLNSNIPDW--MNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHC 557
+ L + ++ L L YL +++ L+ L+++ ++ N+
Sbjct: 406 SNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-- 462
Query: 558 LYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLH 617
P I +L L
Sbjct: 463 -------------------PDIFTELRNLTF----------------------------- 474
Query: 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677
LDLS +L P LS + LN++ N L F + ++ + L N
Sbjct: 475 ----LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Query: 678 N 678
+
Sbjct: 531 D 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-31
Identities = 102/571 (17%), Positives = 176/571 (30%), Gaps = 92/571 (16%)
Query: 157 TYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDI 216
+ LD+SFN L + S + ++ L LS
Sbjct: 28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC------------------------ 62
Query: 217 YAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLL 276
++ +I + G + L + L+ N +
Sbjct: 63 ---------------EIQTI------EDGAY----QSLSHLSTLILTG-NPIQSLALGAF 96
Query: 277 EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNV 336
L++L V +L PI K L+ L+V++N +Q E L NL L++
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 337 ATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIG 396
++N + L L LS N + + F +L +L L N
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSL 214
Query: 397 DIPKTLSNCSALQGLYISDNN------------ISGNIPTRLGNLSFLDAIMMPNNRLEG 444
++ KT L GL + + L NL+ + + +
Sbjct: 215 NVMKTC--IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 445 PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG-PLLG-------D 496
I F L ++ L I + S F + + L P L
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331
Query: 497 LSYNRLNSNIPDWMNRLPQLRYLILANNGLE--GEMPLQLCWLNKLQLVDLSHNNLS--G 552
+ N+ + + LP L +L L+ NGL G L+ +DLS N +
Sbjct: 332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389
Query: 553 QIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYE 612
L + + ++ + + L L L H H +
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD-ISHTH--TRV------AFNGI 440
Query: 613 VQPLHSMSGLDLSCNKLIGEIPLQI-GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLD 671
L S+ L ++ N I EL + L+LS L SP F+ + ++ L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 672 LSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702
++ N L L +L + N
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-23
Identities = 86/474 (18%), Positives = 156/474 (32%), Gaps = 90/474 (18%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L F+ L+ L N +LE + + +LK L+++++ +
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLE------NFPIGH--------LKTLKELNVAHNLI 136
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRL----LDVSFNQLTENISSS 176
L + L L+ +++ N + L L + L LD+S N + I
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG 195
Query: 177 PLMNLTYIEELWLSNNHFQISI----------------SLEPFFNHSKLKFFDGDIYAEI 220
+ + +L L NN +++ L F N L+ FD +
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 221 ETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNK 280
+F+L + + +F ++ L + + R N
Sbjct: 255 CNLTIE---EFRLAYLDYYLDDIIDLFNCL----TNVSSFSLVSVTIERVKD---FSYNF 304
Query: 281 KLKRLSLVNISLFGPFPLPIHCHK-------------------NLRVLDVSNNKLQG-HI 320
+ L LVN L + K +L LD+S N L
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364
Query: 321 PIEIGEVLPNLVVLNVATNAFNGSIPSSFGN----------------TWPWGCFY----L 360
+ +L L+++ N ++ S+F + F L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 361 EYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNNI 418
YL +S+ + F+ F L+ L+ L + GN F + + L L +S +
Sbjct: 424 IYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 419 SGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS 472
PT +LS L + M +N+L+ F +L L+ + L N S P
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 1e-16
Identities = 67/369 (18%), Positives = 116/369 (31%), Gaps = 69/369 (18%)
Query: 60 YLNASLFTSFQQLELLDLSI---LNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLS 116
L F + LE D S L +E F + + + + + + + ++ SL
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 117 NSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSS 176
+ + +L+ VN L L+ L + N+ S
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNAFSEV 344
Query: 177 PLMNLTYIEELWLSNNHFQ-ISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTS 235
L +L + L LS N + F + LK ++ S + +
Sbjct: 345 DLPSLEF---LDLSRNGLSFKGCCSQSDFGTTSLK--------YLDLSFNGVI------- 386
Query: 236 ISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGP 295
LE++D H NL + S+F
Sbjct: 387 ----------TMSSNFLGLEQLEHLDFQHSNLK-----------------QMSEFSVFLS 419
Query: 296 FPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPW 355
NL LD+S+ + I L +L VL +A N+F +
Sbjct: 420 LR-------NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYIS 414
L +L LS L+ QL F +L+ L+ LN+ N ++LQ +++
Sbjct: 472 ----LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
Query: 415 DNNISGNIP 423
N + P
Sbjct: 527 TNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 62 NASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLN 121
S+F S + L LD+S + + + F +S SL+ L ++ +
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAF----------NGIFNGLS----SLEVLKMAGNSFQ 458
Query: 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNL 181
L EL L +++ + L P +L+ L++L+++ NQL ++ L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRL 517
Query: 182 TYIEELWLSNNHFQISISLEPFF 204
T ++++WL N + S +
Sbjct: 518 TSLQKIWLHTNPWDCSCPRIDYL 540
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 7e-35
Identities = 98/580 (16%), Positives = 189/580 (32%), Gaps = 96/580 (16%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
S L A++K L LS + + I L LQ + + + ++ +L L LD
Sbjct: 22 SGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETS 223
+S N L+ ++SSS L+ ++ L L N +Q ++ + F +
Sbjct: 81 LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLT--------------- 123
Query: 224 HSSLTPKFQLTSISLFG-HGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKL 282
L ++ + S I L +++ L+L + + L+ + +
Sbjct: 124 --------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDI 174
Query: 283 KRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
L+L + ++R L++ + L V + +
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 343 GSIPSSFGNTW--PWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK 400
SF L + + +L G L N + + ++ K
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNG-----------LGDFNPSESDVVSELGK 282
Query: 401 TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460
++ L+I + ++ T L + I + N+++ S L+ LE LD
Sbjct: 283 --VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340
Query: 461 LSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNS--NIPDWMNRLPQLRY 518
LS N + +S L LS N L S + + L L
Sbjct: 341 LSENLMV-EEYLKNSACKGAWPSLQTL--------VLSQNHLRSMQKTGEILLTLKNLTS 391
Query: 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQ 578
L ++ N MP W K++ ++LS + + C+
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-------------------- 429
Query: 579 ILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIG 638
L++L + +N + F L + L +S NKL +P
Sbjct: 430 ----PQTLEVLDVSNNNLDSFSLF-------------LPRLQELYISRNKLK-TLP-DAS 470
Query: 639 ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
+ + +S N L F + ++ + L N +
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-30
Identities = 86/508 (16%), Positives = 167/508 (32%), Gaps = 79/508 (15%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
+ + L++L L +E AF + + SL++L LS+++L
Sbjct: 41 IGHGDLRACANLQVLILKSSRINTIEG------DAFYS--------LGSLEHLDLSDNHL 86
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSG-SLPWCLANLTYLRLLDVSFNQLTENISSSPLM 179
+ ++ L L+ +N+ N + NLT L+ L + + I
Sbjct: 87 S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239
LT + EL + + + + + + S
Sbjct: 146 GLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLT--------LHLSESA----------- 185
Query: 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWL--LEKNKKLKRLSLVNISL----F 293
+ F + Y++L NL R + L E + +K+L+ L F
Sbjct: 186 -----FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240
Query: 294 GPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTW 353
+ L ++ + L G FN S
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNG-------------------LGDFNPSESDVVSELG 281
Query: 354 PWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYI 413
+ L + L L + L K+KR+ ++ + + +L+ L +
Sbjct: 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341
Query: 414 SDNNISGNI---PTRLGNLSFLDAIMMPNNRLE--GPIPSAFCQLRHLEILDLSRNNISG 468
S+N + G L +++ N L L++L LD+SRN
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401
Query: 469 SLPSCSSPFNIRRVHLSKNMLQ---GPLLGDLSYNRLNSN-IPDWMNRLPQLRYLILANN 524
SC P +R ++LS ++ + L +++N + + LP+L+ L ++ N
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN 461
Query: 525 GLEGEMPLQLCW-LNKLQLVDLSHNNLS 551
L+ L L ++ +S N L
Sbjct: 462 KLKT---LPDASLFPVLLVMKISRNQLK 486
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 52/359 (14%), Positives = 126/359 (35%), Gaps = 28/359 (7%)
Query: 360 LEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
++ L LS N + + + L+ L L + + +L+ L +SDN++
Sbjct: 28 MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 419 SGNIPTRLGNLSFLDAIMMPNNRL-EGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477
S + G LS L + + N + S F L +L+ L + +
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146
Query: 478 NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWL 537
L ++ L + + + + +L L + + + L
Sbjct: 147 LTSLNEL-----------EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195
Query: 538 NKLQLVDLSHNNLSG---------QIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588
+ ++ ++L NL+ ++ + ++F + F++ ++L + +L
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLH--SMSGLDLSCNKLIGEIPLQIGELSRIHTL 646
+ + L +F + E+ + ++ L + L ++ L ++ +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315
Query: 647 NLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALA---VFSVAFNNLS 702
+ ++ + H+K +E LDLS N + + A ++ N+L
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-14
Identities = 56/340 (16%), Positives = 112/340 (32%), Gaps = 50/340 (14%)
Query: 64 SLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGT 123
+ ++ L + + + + ++ +L L N +
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276
Query: 124 ILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTY 183
+ + G E V ++ ++I + L L + L ++ + V +++ + S +L
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKS 335
Query: 184 IEELWLSNNHFQ--ISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGH 241
+E L LS N + L+ L+ + L S+ G
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLV-------------LS-QNHLRSMQKTGE 381
Query: 242 GDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPFPLP 299
L +L +D+S + + +K++ L+L + I +
Sbjct: 382 --------ILLTLKNLTSLDISRNTFHPMPDS--CQWPEKMRFLNLSSTGIRVVKTCIPQ 431
Query: 300 IHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFY 359
L VLDVSNN L LP L L ++ N ++P +
Sbjct: 432 -----TLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKLK-TLPDASLFP------V 474
Query: 360 LEYLVLSNNSLQGQLFSKEF--NLTKLKRLNLDGNHFIGD 397
L + +S N L+ LT L+++ L N +
Sbjct: 475 LLVMKISRNQLK--SVPDGIFDRLTSLQKIWLHTNPWDCS 512
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 31/209 (14%)
Query: 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555
DLS+N++ + L+ LIL ++ + L L+ +DLS N+LS +
Sbjct: 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLS 90
Query: 556 HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP 615
L L+ L N T
Sbjct: 91 ---------------------SSWFGPLSSLKYLNL-MGNP--YQTLGV-----TSLFPN 121
Query: 616 LHSMSGLDLSCNKLIGEIPLQ-IGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674
L ++ L + + EI L+ ++ L + +L + ++ + L L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 675 NNLNGKIPPRLIELNALAVFSVAFNNLSG 703
+ + L+++ + NL+
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLAR 210
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 47/289 (16%), Positives = 95/289 (32%), Gaps = 84/289 (29%)
Query: 60 YLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSY 119
Y +++++ ++++ + + + C+ + + SL++L LS +
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVP------CSFSQH--------LKSLEFLDLSENL 345
Query: 120 LNGTILDQGLC--ELVYLQEVNIDRNNLS--GSLPWCLANLTYLRLLDVSFNQLTENISS 175
+ L C LQ + + +N+L L L L LD+S N S
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405
Query: 176 SPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTS 235
+ L LS+ +
Sbjct: 406 --CQWPEKMRFLNLSST---------------------------------------GIRV 424
Query: 236 ISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLF 293
+ + I LE +D+S+ NL F +L +L+ L + +
Sbjct: 425 V------KTCIPQT-------LEVLDVSNNNLD-SFSLFL----PRLQELYISRNKLKTL 466
Query: 294 GPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
L L V+ +S N+L+ +P I + L +L + + TN ++
Sbjct: 467 PDASLF----PVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 20/151 (13%)
Query: 63 ASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMS---------ELMASLKYL 113
+ + + L LD+S FL +S + +L+ L
Sbjct: 380 GEILLTLKNLTSLDIS---RNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL 436
Query: 114 SLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENI 173
+SN+ L+ L L LQE+ I RN L +LP + L ++ +S NQL ++
Sbjct: 437 DVSNNNLDSFSLF-----LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SV 488
Query: 174 SSSPLMNLTYIEELWLSNNHFQISISLEPFF 204
LT ++++WL N + S +
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-31
Identities = 101/495 (20%), Positives = 167/495 (33%), Gaps = 79/495 (15%)
Query: 107 MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSF 166
+A L + + T+ +L + + DR + S+ + L L ++ S
Sbjct: 23 LAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 77
Query: 167 NQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSS 226
NQLT +PL NLT + ++ ++NN + P N + L
Sbjct: 78 NQLT---DITPLKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLF----------- 120
Query: 227 LTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLS 286
Q+T I + + L ++LS N + L L++LS
Sbjct: 121 ---NNQITDIDPLKNLTN------------LNRLELSS-NTISDISA--LSGLTSLQQLS 162
Query: 287 LVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIP 346
N P+ L LD+S+NK+ I + L NL L N + P
Sbjct: 163 FGNQVTD---LKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP 216
Query: 347 SSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCS 406
L+ L L+ N L+ +LT L L+L N P LS +
Sbjct: 217 LG-------ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 265
Query: 407 ALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNI 466
L L + N IS P L L+ L + + N+LE P L++L L L NNI
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321
Query: 467 SGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGL 526
S P S ++R+ N + + L + +L +N +
Sbjct: 322 SDISPVSSLT-KLQRLFFYNNKVSDV---------------SSLANLTNINWLSAGHNQI 365
Query: 527 EGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQL 586
PL L ++ + L+ + + N+S N P +
Sbjct: 366 SDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSY 423
Query: 587 QILYTNYHNHKYLTN 601
++ Y
Sbjct: 424 TEPDITWNLPSYTNE 438
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 7e-29
Identities = 95/476 (19%), Positives = 169/476 (35%), Gaps = 79/476 (16%)
Query: 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKL 316
L N+T ++ L + + + NL ++ SNN+L
Sbjct: 26 KMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL 80
Query: 317 QGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFS 376
P++ L LV + + N P + L L L NN +
Sbjct: 81 TDITPLK---NLTKLVDILMNNNQIADITPLA-------NLTNLTGLTLFNNQITD--ID 128
Query: 377 KEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIM 436
NLT L RL L N I DI LS ++LQ L N ++ P L NL+ L+ +
Sbjct: 129 PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLD 183
Query: 437 MPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG-PLLG 495
+ +N++ S +L +LE L + N IS + N+ + L+ N L+ L
Sbjct: 184 ISSNKVSDI--SVLAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKDIGTLA 240
Query: 496 --------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSH 547
DL+ N++++ P ++ L +L L L N + PL L L ++L+
Sbjct: 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNE 296
Query: 548 NNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQR 607
N L P + L L L ++N ++ ++
Sbjct: 297 NQLEDISP------------------------ISNLKNLTYLTLYFNNISDISPVSS--- 329
Query: 608 LYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQV 667
L + L NK+ + L+ I+ L+ HN ++ +P +++ ++
Sbjct: 330 --------LTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRI 377
Query: 668 ESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGN 723
L L+ ++ L P ++ G++ E N
Sbjct: 378 TQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWN 431
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 8e-29
Identities = 106/571 (18%), Positives = 181/571 (31%), Gaps = 138/571 (24%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
L I ++ + L + +T+ + +L + L
Sbjct: 3 LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRL-- 56
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
+ SI +
Sbjct: 57 -------------------------------------GIKSIDGVEY-----LNN----- 69
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
L ++ S+ LT P L+ KL + + N + PL NL L + NN
Sbjct: 70 --LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNN 122
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL 374
++ P++ L NL L +++N + S+ L+ L N +
Sbjct: 123 QITDIDPLKN---LTNLNRLELSSNTISD--ISALSG-----LTSLQQLSFGNQVTDLKP 172
Query: 375 FSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDA 434
+ NLT L+RL++ N + DI L+ + L+ L ++N IS P LG L+ LD
Sbjct: 173 LA---NLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDE 225
Query: 435 IMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLL 494
+ + N+L+ L +L LDL+ N IS +L S + + L N +
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQI----- 277
Query: 495 GDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQI 554
SNI L L L L N LE P + L L + L NN+S
Sbjct: 278 ---------SNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325
Query: 555 PHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQ 614
P + L +LQ L+ + +++ +
Sbjct: 326 P------------------------VSSLTKLQRLFFYNNKVSDVSSLANLTNINW---- 357
Query: 615 PLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674
L N++ P + L+RI L L+ T +++ +
Sbjct: 358 -------LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS---IPNTVK 405
Query: 675 NNLNGKIPPRLI-ELNALAVFSVAFNNLSGK 704
N I P I + + + +N S
Sbjct: 406 NVTGALIAPATISDGGSYTEPDITWNLPSYT 436
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-28
Identities = 97/522 (18%), Positives = 171/522 (32%), Gaps = 112/522 (21%)
Query: 66 FTSFQQLELLDLS---------ILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLS 116
T+ + L + + D S ++ + +L ++ S
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQINFS 76
Query: 117 NSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSS 176
N+ L L L L ++ ++ N ++ P LANLT L L + NQ+T
Sbjct: 77 NNQLTDIT---PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DID 128
Query: 177 PLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSI 236
PL NLT + L LS+N ++ I
Sbjct: 129 PLKNLTNLNRLELSSN---------------------------------------TISDI 149
Query: 237 SLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPF 296
S S L+ + + +T P L L+RL + + +
Sbjct: 150 SALSGLTS------------LQQLSFGN-QVTDLKP---LANLTTLERLDISSNKVSDIS 193
Query: 297 PLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWG 356
L NL L +NN++ P+ +L NL L++ N + +
Sbjct: 194 VL--AKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLAS----- 241
Query: 357 CFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416
L L L+NN + + LTKL L L N I +I L+ +AL L +++N
Sbjct: 242 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNEN 297
Query: 417 NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSP 476
+ P + NL L + + N + P L L+ L N +S + S ++
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS-DVSSLANL 352
Query: 477 FNIRRVHLSKNMLQG--PLLG-------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLE 527
NI + N + PL L+ + ++ + + L
Sbjct: 353 TNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412
Query: 528 GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDN 569
P + D++ N S +S+ + +
Sbjct: 413 A--PATISDGGSYTEPDITWNLPSY-----TNEVSYTFSQPV 447
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-30
Identities = 55/389 (14%), Positives = 124/389 (31%), Gaps = 41/389 (10%)
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV 364
++ V+++ L+ + + N+ L+++ N + + LE L
Sbjct: 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAP-----FTKLELLN 64
Query: 365 LSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPT 424
LS+N L +L+ L+ L+L+ N+ + L +++ L+ ++NNIS +
Sbjct: 65 LSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCS 117
Query: 425 RLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF--NIRRV 482
R + + NN++ ++ LDL N I + + + +
Sbjct: 118 RGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
Query: 483 HLSKNMLQ----GPLLG-----DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQ 533
+L N + + DLS N+L + + + ++ L NN L +
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKA 232
Query: 534 LCWLNKLQLVDLSHNNLSGQIPHCLY----NISFNYREDNHDLFDQDPQILYQLPQLQIL 589
L + L+ DL N + + ++ L Q+ +
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG--- 289
Query: 590 YTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLS 649
H Y + L ++ + + +R ++
Sbjct: 290 ----HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQREIDAL 344
Query: 650 HNNLTGESPVTFSHMKQVESLDLSYNNLN 678
+ +L+ L+
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALD 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-23
Identities = 69/549 (12%), Positives = 166/549 (30%), Gaps = 70/549 (12%)
Query: 148 SLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHS 207
++ N ++ V+ + L + +S + ++EL LS N IS +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58
Query: 208 KLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267
KL+ + S + L + L +DL++ +
Sbjct: 59 KLELLN--------LSSN------VLYETLDLESLST------------LRTLDLNNNYV 92
Query: 268 TREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEV 327
L ++ L N ++ + + + + ++NNK+ ++ G
Sbjct: 93 QE------LLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGC- 142
Query: 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRL 387
+ L++ N + + + LE+L L N + + KLK L
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSD----TLEHLNLQYNFIYD--VKGQVVFAKLKTL 196
Query: 388 NLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP 447
+L N + + + + + + + +N + I L L+ + N
Sbjct: 197 DLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254
Query: 448 SAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIP 507
F ++ + +++ + ++ P LG
Sbjct: 255 RDF-FSKNQRVQTVAKQTVKKL------------TGQNEEECTVPTLGHYGAYCCEDLPA 301
Query: 508 DWMNRLPQLRYLILANNGLEG----EMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISF 563
+ +RL L+ A +G + + + + +D I
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ-----VT 356
Query: 564 NYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLD 623
++ L + + Q+ + + + + T E PL + +
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIV 416
Query: 624 LSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPP 683
++ + Q + + I ++ + T + K DL+ + N +
Sbjct: 417 KRYEEMY--VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474
Query: 684 RLIELNALA 692
++ LA
Sbjct: 475 LVVREQNLA 483
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 5e-21
Identities = 55/468 (11%), Positives = 140/468 (29%), Gaps = 54/468 (11%)
Query: 244 SGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCH 303
+++ +DLS N + L KL+ L+L + L+ L +
Sbjct: 23 KQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYET--LDLESL 79
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
LR LD++NN +Q + + P++ L+ A N + S + +
Sbjct: 80 STLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISRVSCSRGQG--------KKNI 125
Query: 364 VLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIG-DIPKTLSNCSALQGLYISDNNISGNI 422
L+NN + E ++++ L+L N + + ++ L+ L + N I ++
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184
Query: 423 PTR--LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIR 480
+ L LD + +N+L + F + + L N + + N+
Sbjct: 185 KGQVVFAKLKTLD---LSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240
Query: 481 RVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540
L N + D+ ++ +++ + A ++
Sbjct: 241 HFDLRGNGFHC------------GTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVP 286
Query: 541 QLVDLSHNNLSGQIPHCLYNISFNYREDN------HDLFDQDPQILYQLPQLQILYTNYH 594
L + R+++ ++ + + +
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346
Query: 595 NHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLT 654
++ + + T + L+ L ++ + +
Sbjct: 347 QYRTVIDQVT---------LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397
Query: 655 GESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702
T + + + ++ NA+ + + + +
Sbjct: 398 ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 6e-20
Identities = 59/456 (12%), Positives = 124/456 (27%), Gaps = 72/456 (15%)
Query: 103 MSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLL 162
+ + K +++S L L ++E+++ N LS LA T L LL
Sbjct: 5 IKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 163 DVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIET 222
++S N L E + L +L+ + L L+NN+
Sbjct: 64 NLSSNVLYE---TLDLESLSTLRTLDLNNNYV---------------------------- 92
Query: 223 SHSSLTPKFQLTSISL----FGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEK 278
L + ++ + + L++ +T +
Sbjct: 93 --QELLVGPSIETLHAANNNISRVSCSRGQG-------KKNIYLANNKIT-MLRDLDEGC 142
Query: 279 NKKLKRLSLVNISLFG-PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVA 337
+++ L L + F L L++ N + + ++ L L+++
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLS 199
Query: 338 TNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIG 396
+N + F + + ++ L NN L K L+ +L GN F
Sbjct: 200 SNKLA-FMGPEFQS-----AAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHC 251
Query: 397 DIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHL 456
+ + ++ + + E +L L
Sbjct: 252 GTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310
Query: 457 EILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLG--DLSYNRLNSNIPDWMNRLP 514
+ + + + GS L D + + I R
Sbjct: 311 KRKEHALLSGQGSETE----------RLECERENQARQREIDALKEQYRTVIDQVTLRKQ 360
Query: 515 QLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550
L L+ ++ +L
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 5e-15
Identities = 67/509 (13%), Positives = 147/509 (28%), Gaps = 100/509 (19%)
Query: 61 LNASLFTSFQQLELLDLS-----------ILNFKNLEYFNMDFCTAFSNSFLQMSEL--M 107
ASL S ++ LDLS + F LE N+ SN + +L +
Sbjct: 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-----SNVLYETLDLESL 79
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFN 167
++L+ L L+N+Y+ Q L ++ ++ NN+S + + + + ++ N
Sbjct: 80 STLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANN 130
Query: 168 QLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSL 227
++T + + ++ L L N
Sbjct: 131 KITM-LRDLDEGCRSRVQYLDLKLN----------------------------------- 154
Query: 228 TPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL 287
++ +++ F + LE+++L + + + KLK L L
Sbjct: 155 ----EIDTVN---------FAELAASSDTLEHLNLQYNFIYDVKGQVVF---AKLKTLDL 198
Query: 288 VNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPS 347
+ L + + + NNKL I + NL ++ N F+
Sbjct: 199 SSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF-SQNLEHFDLRGNGFHCGTLR 255
Query: 348 SFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407
F + ++ +++ E T + A
Sbjct: 256 DFFSKN------QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309
Query: 408 LQGLYISDNNISGNIPTRLGNLSF----LDAIMMPNNRLEGPIPSAFCQLRHLEILDLSR 463
L+ + + G+ RL I + I + + L+ +
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Query: 464 NNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPD--WMNRLPQLRYLIL 521
+ N RR H + +G + + + + +
Sbjct: 370 KALD------EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423
Query: 522 ANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550
++ + + + L+ N
Sbjct: 424 VEQQSVQNNAIRDWDMYQHKETQLAEENA 452
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 6e-13
Identities = 57/492 (11%), Positives = 122/492 (24%), Gaps = 85/492 (17%)
Query: 61 LNASLFTSFQQLELLDLS---------ILNFKNLEYFNMDFCTAFSNSFLQMSELMASLK 111
++A+ F +LELL+LS + + L +++ +N ++ S++
Sbjct: 49 ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLN-----NNYVQELLVG-PSIE 102
Query: 112 YLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTE 171
L +N+ + + + + + + N ++ + ++ LD+ N++
Sbjct: 103 TLHAANNNI--SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 172 NISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKF 231
+ + +E L L N + +
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFI------------------------------YDVKGQV 188
Query: 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNIS 291
L+ +DLS L P + + +SL N
Sbjct: 189 VFAK---------------------LKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNK 225
Query: 292 LFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGN 351
L + +NL D+ N + + VA +
Sbjct: 226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEE 282
Query: 352 TWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHF----IGDIPKTLSNCSA 407
C + L LKR + N +
Sbjct: 283 -----CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337
Query: 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNN-I 466
+ + I + L+ + + L+ I
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397
Query: 467 SGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGL 526
+ + K + + N + + ++ QL L
Sbjct: 398 ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 457
Query: 527 EGEMPLQLCWLN 538
GE L L N
Sbjct: 458 NGEADLALASAN 469
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 1e-27
Identities = 76/427 (17%), Positives = 148/427 (34%), Gaps = 92/427 (21%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ ++ P A+L + +T+ L I +L ++
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGE-- 54
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
++ SI +
Sbjct: 55 -------------------------------------KVASIQGIE------------YL 65
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
+LEY++L+ +T P L KL L + + + NLR L ++ +
Sbjct: 66 TNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL 374
+ P+ L + LN+ N N S S N L YL ++ + ++
Sbjct: 121 NISDISPLAN---LTKMYSLNLGAN-HNLSDLSPLSN-----MTGLNYLTVTESKVKD-- 169
Query: 375 FSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLD 433
NLT L L+L+ N I DI L++ ++L N I+ P + N++ L+
Sbjct: 170 -VTPIANLTDLYSLSLNYNQ-IEDIS-PLASLTSLHYFTAYVNQITDITP--VANMTRLN 224
Query: 434 AIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG-P 492
++ + NN++ P L L L++ N IS + + ++ +++ N +
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISDIS 281
Query: 493 LLG--------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVD 544
+L L+ N+L + + + L L L L+ N + PL L+K+ D
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS--LSKMDSAD 339
Query: 545 LSHNNLS 551
++ +
Sbjct: 340 FANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 3e-27
Identities = 79/400 (19%), Positives = 144/400 (36%), Gaps = 76/400 (19%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
+ + + E L ++ L VA + LEYL
Sbjct: 22 AEGIRAVLQKASVTDVVTQEE---LESITKLVVAGEKV--ASIQGIEY-----LTNLEYL 71
Query: 364 VLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP 423
L+ N + S NL KL L + N I DI L N + L+ LY++++NIS P
Sbjct: 72 NLNGNQITD--ISPLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDNISDISP 127
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVH 483
L NL+ + ++ + N S + L L ++ + + +P +
Sbjct: 128 --LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDV-----TPIA----N 175
Query: 484 LSK-NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542
L+ L L+YN++ P + L L Y N + P+ + +L
Sbjct: 176 LTDLYSL------SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANMTRLNS 225
Query: 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNF 602
+ + +N ++ P L L QL L N +++
Sbjct: 226 LKIGNNKITDLSP------------------------LANLSQLTWLEI-GTNQ--ISDI 258
Query: 603 TTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFS 662
V+ L + L++ N+ I +I + LS++++L L++N L E
Sbjct: 259 N--------AVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG 308
Query: 663 HMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702
+ + +L LS N++ P L L+ + A +
Sbjct: 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-26
Identities = 64/357 (17%), Positives = 127/357 (35%), Gaps = 62/357 (17%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
VL S+ + L + +L + G + I + + L+ L ++ N I+
Sbjct: 24 GIRAVLQKASVTD--VVTQEELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQIT 79
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
P L NL L + + N++ SA L +L L L+ +NIS P + +
Sbjct: 80 DISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLANLT-KM 134
Query: 480 RRVHLSKNMLQGPLLG----------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGE 529
++L N L ++ +++ P + L L L L N +E
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192
Query: 530 MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQIL 589
PL L L N ++ P + + +L L
Sbjct: 193 SPL--ASLTSLHYFTAYVNQITDITP------------------------VANMTRLNSL 226
Query: 590 YTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLS 649
+ L+ L ++ L++ N++ + +L+++ LN+
Sbjct: 227 KIGNNKITDLSPLAN-----------LSQLTWLEIGTNQISDINAV--KDLTKLKMLNVG 273
Query: 650 HNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706
N ++ S +++ Q+ SL L+ N L + + L L ++ N+++ P
Sbjct: 274 SNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 3e-22
Identities = 74/406 (18%), Positives = 142/406 (34%), Gaps = 70/406 (17%)
Query: 70 QQLELLDLSI------LNFKNLEYFNMDFCTAFSNSFLQMSEL--MASLKYLSLSNSYLN 121
L L I + + S + + S+ L ++ +
Sbjct: 3 ATLATLPAPINQIFPDADLAEGIRAVLQ-----KASVTDVVTQEELESITKLVVAGEKVA 57
Query: 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNL 181
QG+ L L+ +N++ N ++ P L+NL L L + N++T S L NL
Sbjct: 58 SI---QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT---DISALQNL 109
Query: 182 TYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGH 241
T + EL+L+ + IS + P N +K+ + + S L+ L +++
Sbjct: 110 TNLRELYLNED--NIS-DISPLANLTKMYSLNLG-ANHNLSDLSPLSNMTGLNYLTVTES 165
Query: 242 GDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIH 301
+ P + + DL + L++ N + L L + + P+
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNY-NQIEDISP--LASLTSLHYFTAYVNQITDI--TPVA 218
Query: 302 CHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLE 361
L L + NNK+ P+ L L L + TN + ++ + L+
Sbjct: 219 NMTRLNSLKIGNNKITDLSPLAN---LSQLTWLEIGTNQISD--INAVKD-----LTKLK 268
Query: 362 YLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN 421
L + +N + S NL++L L L+ N + + + + L L++S N+I+
Sbjct: 269 MLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 422 IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
P L ++ D + I
Sbjct: 327 RP--------------------------LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 6e-15
Identities = 60/354 (16%), Positives = 115/354 (32%), Gaps = 91/354 (25%)
Query: 66 FTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTIL 125
++ +L L + ++ A N + +L+ L L+ ++
Sbjct: 84 LSNLVKLTNLYIGTNKITDIS--------ALQN--------LTNLRELYLNEDNISDIS- 126
Query: 126 DQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIE 185
L L + +N+ N+ L L+N+T L L V+ +++ +P+ NLT +
Sbjct: 127 --PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK---DVTPIANLTDLY 180
Query: 186 ELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG 245
L L+ N + + P + + L +F + +TP +T
Sbjct: 181 SLSLNYNQIE---DISPLASLTSLHYFTAY-----VNQITDITPVANMTR---------- 222
Query: 246 IFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKN 305
L + + + +T P L +L L + + +
Sbjct: 223 -----------LNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDINAV--KDLTK 266
Query: 306 LRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVL 365
L++L+V +N++ I + L L L + N G
Sbjct: 267 LKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIG--------------- 308
Query: 366 SNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
LT L L L NH I DI L++ S + ++ I
Sbjct: 309 --------------GLTNLTTLFLSQNH-ITDIR-PLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 66 FTSFQQLELLDLS---------ILNFKNLEYFNMDFCTAFSNSFLQMSEL--MASLKYLS 114
+ QL L++ + + L+ N+ SN +S L ++ L L
Sbjct: 239 LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG-----SNQISDISVLNNLSQLNSLF 293
Query: 115 LSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTE 171
L+N+ L ++ + L L + + +N+++ P LA+L+ + D + + +
Sbjct: 294 LNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-25
Identities = 76/413 (18%), Positives = 143/413 (34%), Gaps = 87/413 (21%)
Query: 276 LEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLN 335
L+ + + + + F N +++ N+ ++ +P + + + +LN
Sbjct: 17 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75
Query: 336 VATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN---SLQGQLFSKEFNLTKLKRLNLDGN 392
+ +F ++ L + N L +F N+ L L L+ N
Sbjct: 76 LNDLQIEEIDTYAF-----AYAHTIQKLYMGFNAIRYLPPHVFQ---NVPLLTVLVLERN 127
Query: 393 HFIGDIPK-TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFC 451
+ +P+ N L L +S+NN+ I F
Sbjct: 128 D-LSSLPRGIFHNTPKLTTLSMSNNNLE-RIE-----------------------DDTFQ 162
Query: 452 QLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ--GPLLG----DLSYNRLNSN 505
L+ L LS N ++ + S ++ ++S N+L + D S+N +N
Sbjct: 163 ATTSLQNLQLSSNRLT-HVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV- 219
Query: 506 IPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNY 565
+ +L L L +N L L L VDLS+N L +I
Sbjct: 220 VRG--PVNVELTILKLQHNNLTDTAWLLN--YPGLVEVDLSYNELE-KIM---------- 264
Query: 566 REDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLS 625
++ +L+ LY + +N L QP+ ++ LDLS
Sbjct: 265 -----------YHPFVKMQRLERLYIS-NNR--LVALNL-------YGQPIPTLKVLDLS 303
Query: 626 CNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
N + + + R+ L L HN++ T +K +L LS+N+ +
Sbjct: 304 HNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-23
Identities = 70/436 (16%), Positives = 150/436 (34%), Gaps = 101/436 (23%)
Query: 123 TILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLT 182
+D L +V+ID + L +++ + + + + ++ L +
Sbjct: 11 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFR 69
Query: 183 YIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHG 242
+E L L++ + I F ++ ++ +++
Sbjct: 70 QVELLNLNDLQIE-EIDTYAFAYAHTIQ--------KLYMGFNAIR-------------- 106
Query: 243 DSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL-------VNISLFGP 295
+ P + L + L +L+ P + KL LS+ + F
Sbjct: 107 --YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 296 FPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPW 355
+L+ L +S+N+L H+ + ++P+L NV+ N + ++
Sbjct: 164 TT-------SLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLS-TLAIPIA----- 206
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD 415
+E L S+NS+ + +L L L N+ + D L N L + +S
Sbjct: 207 ----VEELDASHNSIN-VVRGPVN--VELTILKLQHNN-LTDTA-WLLNYPGLVEVDLSY 257
Query: 416 NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSS 475
N + + + L+ + + NNRL + + L++LDLS N++
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL--------- 307
Query: 476 PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLC 535
++ + +L L L +N + + L+L
Sbjct: 308 ----------------------------LHVERNQPQFDRLENLYLDHNSI---VTLKLS 336
Query: 536 WLNKLQLVDLSHNNLS 551
+ L+ + LSHN+
Sbjct: 337 THHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 3e-20
Identities = 61/346 (17%), Positives = 113/346 (32%), Gaps = 61/346 (17%)
Query: 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNN 417
+ + + ++ L K + + + +P L + ++ L ++D
Sbjct: 22 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ 80
Query: 418 ISGNIPTR-LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSP 476
I I T + + M N + P F + L +L L RN++S SLP
Sbjct: 81 IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 138
Query: 477 FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW 536
+ L +S N L D L+ L L++N L + L
Sbjct: 139 NTPKLTTL-----------SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSL 184
Query: 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596
+ L ++S+N LS L ++ L + HN
Sbjct: 185 IPSLFHANVSYNLLS---------------------------TLAIPIAVEELDAS-HN- 215
Query: 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE 656
+ ++ L L N L + + + ++LS+N L
Sbjct: 216 ----------SINVVRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKI 263
Query: 657 SPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702
F M+++E L +S N L + + L V ++ N+L
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-19
Identities = 64/410 (15%), Positives = 128/410 (31%), Gaps = 91/410 (22%)
Query: 61 LNASLFTSFQQLELLDLSILNFKN--LEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNS 118
++ F+ + L + I+ FKN + + ++ L+L++
Sbjct: 31 QTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA---LLDS--------FRQVELLNLNDL 79
Query: 119 YLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPL 178
+ I +Q++ + N + P N+ L +L + N L+ +
Sbjct: 80 QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIF 137
Query: 179 MNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISL 238
N + L +SNN L I
Sbjct: 138 HNTPKLTTLSMSNN---------------------------------------NLERI-- 156
Query: 239 FGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPL 298
+ F L+ + LS LT L+ L ++ L
Sbjct: 157 ----EDDTF----QATTSLQNLQLSSNRLT-HVDLSLI---PSLFHANVSYNLL-----S 199
Query: 299 PIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCF 358
+ + LD S+N + + G V L +L + N W
Sbjct: 200 TLAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNLT-DTA------WLLNYP 248
Query: 359 YLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNN 417
L + LS N L+ ++ F + +L+RL + N + + L+ L +S N+
Sbjct: 249 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH 306
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
+ ++ L+ + + +N + + + L+ L LS N+
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 70/379 (18%), Positives = 118/379 (31%), Gaps = 118/379 (31%)
Query: 60 YLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSY 119
YL +F + L +L L + +L F N L LS+SN+
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPR------GIFHN--------TPKLTTLSMSNNN 152
Query: 120 LNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLM 179
L I D LQ + + N L+ + L+ + L +VS+N L+ L
Sbjct: 153 LE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLST------LA 202
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239
+EEL S+N + +
Sbjct: 203 IPIAVEELDASHN---------------------------------------SINVVR-- 221
Query: 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLP 299
+ + L + L H NLT + + +P
Sbjct: 222 ----GPVNVE-------LTILKLQHNNLT--------------------DTAWLLNYP-- 248
Query: 300 IHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFY 359
L +D+S N+L+ I + L L ++ N ++
Sbjct: 249 -----GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP-----IPT 296
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L+ L LS+N L + + +L+ L LD N I + LS L+ L +S N+
Sbjct: 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 352
Query: 420 GN----IPTRLGNLSFLDA 434
N + + + DA
Sbjct: 353 CNSLRALFRNVARPAVDDA 371
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 38/219 (17%)
Query: 487 NMLQGPLLGDLSYNRLNSNIPDWMN--RLPQLRYLILANNGLEGEMPLQLCWLNKLQLVD 544
N+ + D+ + ++ L + + N+ + L +++L++
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75
Query: 545 LSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTT 604
L+ + +I +Q LY ++ +YL
Sbjct: 76 LNDLQIE-EID---------------------TYAFAYAHTIQKLYMGFNAIRYLPPHV- 112
Query: 605 KQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQI-GELSRIHTLNLSHNNLTGESPVTFSH 663
Q + ++ L L N + +P I ++ TL++S+NNL TF
Sbjct: 113 --------FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 664 MKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702
+++L LS N L + L + +L +V++N LS
Sbjct: 164 TTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS 199
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-25
Identities = 68/389 (17%), Positives = 129/389 (33%), Gaps = 89/389 (22%)
Query: 298 LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357
+P R+LD+ N+++ + + P+L L + N + P +F
Sbjct: 26 VPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFN-----NL 79
Query: 358 FYLEYLVLSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP-KTLSNCSALQGLYI 413
F L L L +N + +F+ L+ L +L++ N I + + L+ L +
Sbjct: 80 FNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEV 135
Query: 414 SDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSC 473
DN++ I AF L LE L L + N++
Sbjct: 136 GDNDLV-YIS-----------------------HRAFSGLNSLEQLTLEKCNLT------ 165
Query: 474 SSPFNIRRVHLSKNMLQG-PLLG--DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530
+ L L L + +N+ RL +L+ L +++ M
Sbjct: 166 ---------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216
Query: 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILY 590
+ L + ++H NL+ +P + L L+ L
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVP---------------------YLAVRHLVYLRFLN 254
Query: 591 TNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQI-GELSRIHTLNLS 649
+Y+ + + L + + L + + + L+ + LN+S
Sbjct: 255 LSYNPISTIEGSM---------LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVS 304
Query: 650 HNNLTGESPVTFSHMKQVESLDLSYNNLN 678
N LT F + +E+L L N L
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-25
Identities = 66/353 (18%), Positives = 120/353 (33%), Gaps = 63/353 (17%)
Query: 360 LEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDI-PKTLSNCSALQGLYISDNN 417
L L N ++ L EF + L+ L L+ N + + P +N L+ L + N
Sbjct: 34 TRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 418 IS---GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCS 474
+ + T L NL+ LD + N++ + F L +L+ L++ N++
Sbjct: 92 LKLIPLGVFTGLSNLTKLD---ISENKIVILLDYMFQDLYNLKSLEVGDNDLV------- 141
Query: 475 SPFNIRRVHLSKNMLQG-PLLG--DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP 531
++S G L L L S + ++ L L L L + +
Sbjct: 142 --------YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193
Query: 532 LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYT 591
L +L+++++SH + L L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLY----------------------GLNLTSLSI 231
Query: 592 NYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQI-GELSRIHTLNLSH 650
+ N + V+ L + L+LS N I I + EL R+ + L
Sbjct: 232 THCNLTAVPYLA---------VRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVG 281
Query: 651 NNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNALAVFSVAFNNLS 702
L P F + + L++S N L + + + L + N L+
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 2e-21
Identities = 65/336 (19%), Positives = 103/336 (30%), Gaps = 53/336 (15%)
Query: 233 LTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL----- 287
+ L + + LE ++L+ N+ L+ L L
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 288 --VNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSI 345
+ + +F NL LD+S NK+ + + + L NL L V N I
Sbjct: 93 KLIPLGVFTGLS-------NLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YI 143
Query: 346 PSSFGNTWPWGCFY----LEYLVLSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDI 398
F LE L L S+ + S +L L L L +
Sbjct: 144 SH--------RAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIR 192
Query: 399 PKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEI 458
+ L+ L IS + L ++ + + L A L +L
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 459 LDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG-PLLG--DLSYNRLNSNIPDWMNRLPQ 515
L+LS N IS + +ML L L +L P L
Sbjct: 253 LNLSYNPIS---------------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297
Query: 516 LRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551
LR L ++ N L + L+ + L N L+
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 2e-21
Identities = 68/391 (17%), Positives = 125/391 (31%), Gaps = 89/391 (22%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
+ + L L + + T+ +L+E+ ++ N +S P NL LR L
Sbjct: 28 EGIPTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETS 223
+ N+L I L+ + +L +S N
Sbjct: 87 LRSNRLKL-IPLGVFTGLSNLTKLDISEN------------------------------- 114
Query: 224 HSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLK 283
++ + ++L+ +++ N + L+
Sbjct: 115 --------KIVILL----------DYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLE 155
Query: 284 RLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG 343
+L+L L IP E L L+VL + N
Sbjct: 156 QLTL------------------------EKCNLT-SIPTEALSHLHGLIVLRLRHLNINA 190
Query: 344 SIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP-KTL 402
SF + L+ L +S+ + L L++ + + +P +
Sbjct: 191 IRDYSF-----KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAV 244
Query: 403 SNCSALQGLYISDNNISGNIPTR-LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDL 461
+ L+ L +S N IS I L L L I + +L P AF L +L +L++
Sbjct: 245 RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303
Query: 462 SRNNISGSLP--SCSSPFNIRRVHLSKNMLQ 490
S N ++ +L S N+ + L N L
Sbjct: 304 SGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 4e-21
Identities = 56/310 (18%), Positives = 108/310 (34%), Gaps = 53/310 (17%)
Query: 397 DIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHL 456
+P+ + + + L + N I + L+ + + N + P AF L +L
Sbjct: 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 457 EILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG-PLLG--DLSYNRLNSNIPDWMNRL 513
L L N + + + G L D+S N++ + L
Sbjct: 83 RTLGLRSNRLK---------------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127
Query: 514 PQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLF 573
L+ L + +N L LN L+ + L NL+ IP
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIP------------------ 168
Query: 574 DQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEI 633
+ L L L +L H + + + Y + L+ + L++S + +
Sbjct: 169 ---TEALSHLHGLIVLR-LRHLN--INA------IRDYSFKRLYRLKVLEISHWPYLDTM 216
Query: 634 PLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNALA 692
+ +L+++H NLT + H+ + L+LSYN ++ I ++ L L
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQ 275
Query: 693 VFSVAFNNLS 702
+ L+
Sbjct: 276 EIQLVGGQLA 285
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 3e-16
Identities = 74/361 (20%), Positives = 123/361 (34%), Gaps = 76/361 (21%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
LN F SF LE L+L+ +E AF+N + +L+ L L ++ L
Sbjct: 47 LNQDEFASFPHLEELELNENIVSAVEPG------AFNN--------LFNLRTLGLRSNRL 92
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
I L L +++I N + L + +L L+ L+V N L IS
Sbjct: 93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSG 150
Query: 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFG 240
L +E+L L LTSI
Sbjct: 151 LNSLEQLTLEKC---------------------------------------NLTSIP--- 168
Query: 241 HGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPI 300
+ L H H L + L HLN+ ++ ++ +LK L + +
Sbjct: 169 -------TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220
Query: 301 HCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYL 360
NL L +++ L +P L L LN++ N + S L
Sbjct: 221 LYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH-----ELLRL 274
Query: 361 EYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNNI 418
+ + L L + F L L+ LN+ GN + + + + L+ L + N +
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPL 332
Query: 419 S 419
+
Sbjct: 333 A 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 9e-10
Identities = 49/288 (17%), Positives = 98/288 (34%), Gaps = 77/288 (26%)
Query: 60 YLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSY 119
L +F L+ L++ + + AFS + SL+ L+L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYIS------HRAFSG--------LNSLEQLTLEKCN 163
Query: 120 LNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLM 179
L +I + L L L + + N++ + L L++L++S + ++ + L
Sbjct: 164 LT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239
L + L +++ LT++
Sbjct: 223 GLN-LTSLSITHC---------------------------------------NLTAVP-- 240
Query: 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL----FGP 295
+ H L +++LS+ ++ +L + +L+ + LV L
Sbjct: 241 --------YLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291
Query: 296 FP-LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
F L LRVL+VS N+L + + + NL L + +N
Sbjct: 292 FRGLN-----YLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 47/260 (18%), Positives = 101/260 (38%), Gaps = 31/260 (11%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
++ V+++ L+ + + N+ L+++ N + + LE L
Sbjct: 10 NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAP-----FTKLELL 63
Query: 364 VLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNI 422
LS+N L + + +L+ L+ L+L+ N+ + L +++ L+ ++NNIS
Sbjct: 64 NLSSNVLYE---TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115
Query: 423 PTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG-SLPSCSSPF-NIR 480
+R + + NN++ ++ LDL N I + ++ +
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
Query: 481 RVHLSKNMLQ----GPLLG-----DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP 531
++L N + + DLS N+L + + + ++ L NN L +
Sbjct: 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIE 230
Query: 532 LQLCWLNKLQLVDLSHNNLS 551
L + L+ DL N
Sbjct: 231 KALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 51/311 (16%), Positives = 106/311 (34%), Gaps = 45/311 (14%)
Query: 398 IPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457
I + N + + ++D+++ + + + + + + N L + LE
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 458 ILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ----GPLLG--DLSYNRLNSNIPDWMN 511
+L+LS N + S +R + L+ N +Q GP + + N + S + +
Sbjct: 62 LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI-SRVSC--S 117
Query: 512 RLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHD 571
R + + LANN + L +++Q +DL N + +
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVN---------------- 160
Query: 572 LFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG 631
++ L+ L +N + + + LDLS NKL
Sbjct: 161 ----FAELAASSDTLEHLNLQ-YNF--IYDVK--------GQVVFAKLKTLDLSSNKLA- 204
Query: 632 EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691
+ + + + ++L +N L + +E DL N + R
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQ 262
Query: 692 AVFSVAFNNLS 702
V +VA +
Sbjct: 263 RVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 46/334 (13%), Positives = 107/334 (32%), Gaps = 73/334 (21%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ + ++L +L + ++ LD+S N L++ IS++ L T +E L LS+N
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSN-- 68
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
L +
Sbjct: 69 -------------------------------------VLYETLDLESLST---------- 81
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
L +DL++ + L ++ L N ++ + + + + ++NN
Sbjct: 82 --LRTLDLNNNYVQE------LLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANN 130
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNG-SIPSSFGNTWPWGCFYLEYLVLSNNSLQGQ 373
K+ ++ G + L++ N + + + LE+L L N +
Sbjct: 131 KITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAAS-----SDTLEHLNLQYNFIYD- 183
Query: 374 LFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLD 433
+ KLK L+L N + + + + + + + +N + I L L+
Sbjct: 184 -VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240
Query: 434 AIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
+ N F ++ + +++ +
Sbjct: 241 HFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 6e-15
Identities = 50/361 (13%), Positives = 119/361 (32%), Gaps = 57/361 (15%)
Query: 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQ 168
K +++S L L ++E+++ N LS LA T L LL++S N
Sbjct: 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 169 LTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLT 228
L E + L +L+ + L L+NN+ ++ ++ + +++
Sbjct: 70 LYE---TLDLESLSTLRTLDLNNNY------VQELLVGPSIE--------TLHAANN--- 109
Query: 229 PKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLV 288
++ +S + + L++ +T + +++ L L
Sbjct: 110 ---NISRVS------CSRGQG-------KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLK 152
Query: 289 NISLFG-PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPS 347
+ F L L++ N + + ++ L L++++N +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGP 208
Query: 348 SFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCS 406
F + + ++ L NN L K L+ +L GN F +
Sbjct: 209 EFQS-----AAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSK 260
Query: 407 ALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNI 466
+ ++ + + + + + +P+ F ++ L ++
Sbjct: 261 NQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHH 315
Query: 467 S 467
Sbjct: 316 H 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 39/240 (16%), Positives = 90/240 (37%), Gaps = 24/240 (10%)
Query: 61 LNASLFTSFQQLELLDLS---------ILNFKNLEYFNMDFCTAFSNSFLQMSELMASLK 111
++A+ F +LELL+LS + + L ++ +N+++Q + S++
Sbjct: 49 ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL------NNNYVQELLVGPSIE 102
Query: 112 YLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTE 171
L +N+ + + + + + + N ++ + ++ LD+ N++
Sbjct: 103 TLHAANNNI--SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 172 NISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKF 231
+ + +E L L N ++ +KLK D ++
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLS-SNKLAFMGPEFQSAA 214
Query: 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNIS 291
+T ISL + I K L +LE+ DL KN++++ ++ +
Sbjct: 215 GVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 47/270 (17%), Positives = 93/270 (34%), Gaps = 57/270 (21%)
Query: 61 LNASLFTSFQQLELLDLS-----------ILNFKNLEYFNMDFCTAFSNSFLQMSEL--M 107
ASL S ++ LDLS + F LE N+ SN + +L +
Sbjct: 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-----SNVLYETLDLESL 79
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFN 167
++L+ L L+N+Y+ Q L ++ ++ NN+S + + + + ++ N
Sbjct: 80 STLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANN 130
Query: 168 QLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSL 227
++T + + ++ L L N +++ S
Sbjct: 131 KITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSD------------------- 169
Query: 228 TPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL 287
L ++L + + + L+ +DLS L P + + +SL
Sbjct: 170 ----TLEHLNLQYNFIYDV-KGQVVFAK-LKTLDLSSNKLAFMGPE--FQSAAGVTWISL 221
Query: 288 VNISLFGPFPLPIHCHKNLRVLDVSNNKLQ 317
N L + +NL D+ N
Sbjct: 222 RNNKL-VLIEKALRFSQNLEHFDLRGNGFH 250
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 5e-24
Identities = 76/407 (18%), Positives = 141/407 (34%), Gaps = 87/407 (21%)
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
+ + + F N +++ N+ ++ +P + + + +LN+
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 87
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDI 398
+F ++ L + N L +F N+ L L L+ N + +
Sbjct: 88 EEIDTYAF-----AYAHTIQKLYMGFNAIRYLPPHVFQ---NVPLLTVLVLERND-LSSL 138
Query: 399 PK-TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457
P+ N L L +S+NN+ I F L+
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIE-----------------------DDTFQATTSLQ 174
Query: 458 ILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ--GPLLG----DLSYNRLNSNIPDWMN 511
L LS N ++ + S ++ ++S N+L + D S+N +N +
Sbjct: 175 NLQLSSNRLT-HVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV-VRG--P 229
Query: 512 RLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHD 571
+L L L +N L L L VDLS+N L +I
Sbjct: 230 VNVELTILKLQHNNLTDTAWLL--NYPGLVEVDLSYNELE-KIM---------------- 270
Query: 572 LFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG 631
++ +L+ LY + +N L QP+ ++ LDLS N L+
Sbjct: 271 -----YHPFVKMQRLERLYIS-NNR--LVALNL-------YGQPIPTLKVLDLSHNHLL- 314
Query: 632 EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
+ + R+ L L HN++ T +K +L LS+N+ +
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 86/578 (14%), Positives = 186/578 (32%), Gaps = 129/578 (22%)
Query: 125 LDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYI 184
+D L +V+ID + L +++ + + + + ++ L + +
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQV 77
Query: 185 EELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDS 244
E L L++ Q+ I D+
Sbjct: 78 ELLNLNDL---------------------------------------QIEEI------DT 92
Query: 245 GIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL-------VNISLFGPFP 297
F + H ++ + + N R P + + L L L + +F P
Sbjct: 93 YAFA----YAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147
Query: 298 LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357
L L +SNN L+ I + + +L L +++N S +
Sbjct: 148 -------KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS------ 193
Query: 358 FYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNN 417
L + +S N L S ++ L+ N I + + L L + NN
Sbjct: 194 --LFHANVSYNLL-----STLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNN 243
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477
++ + L N L + + N LE + F +++ LE L +S N + +L P
Sbjct: 244 LT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300
Query: 478 -NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW 536
++ + LS N L ++ + +L L L +N + + L+L
Sbjct: 301 PTLKVLDLSHNHLL--------------HVERNQPQFDRLENLYLDHNSI---VTLKLST 343
Query: 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYH-- 594
+ L+ + LSHN+ + + + + + + H
Sbjct: 344 HHTLKNLTLSHNDWD---------------------CNSLRALFRNVARPAVDDADQHCK 382
Query: 595 -NHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNL 653
+++ K+ Y + L ++ + + + I+++ + +
Sbjct: 383 IDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK--VQRAQGRCSATDTINSVQSLSHYI 440
Query: 654 TGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691
T + V +Q+E+ ++ I+ L
Sbjct: 441 TQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQL 478
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 4e-19
Identities = 61/346 (17%), Positives = 112/346 (32%), Gaps = 61/346 (17%)
Query: 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNN 417
+ + + ++ L K + + + +P L + ++ L ++D
Sbjct: 28 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ 86
Query: 418 ISGNIPTR-LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSP 476
I I T + + M N + P F + L +L L RN++S SLP
Sbjct: 87 IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144
Query: 477 FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW 536
+ L +S N L D L+ L L++N L + L
Sbjct: 145 NTPKLTTL-----------SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSL 190
Query: 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596
+ L ++S+N LS L ++ L HN
Sbjct: 191 IPSLFHANVSYNLLS---------------------------TLAIPIAVEELD-ASHN- 221
Query: 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE 656
+ ++ L L N L + + + ++LS+N L
Sbjct: 222 ----------SINVVRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKI 269
Query: 657 SPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702
F M+++E L +S N L + + L V ++ N+L
Sbjct: 270 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 1e-18
Identities = 88/626 (14%), Positives = 196/626 (31%), Gaps = 71/626 (11%)
Query: 69 FQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMS------------ELMASLKYLSLS 116
D+ I YF + T + + + ++ L+L+
Sbjct: 24 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83
Query: 117 NSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSS 176
+ + I +Q++ + N + P N+ L +L + N L+ +
Sbjct: 84 DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRG 141
Query: 177 PLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSI 236
N + L +SNN+ + I + F + L+ ++ S + +LT +
Sbjct: 142 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ--------NLQLSSN------RLTHV 186
Query: 237 SLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPF 296
L + P L + ++S+ L+ L ++ L + S+
Sbjct: 187 DL------SLIPS-------LFHANVSYNLLST------LAIPIAVEELDASHNSINV-- 225
Query: 297 PLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWG 356
+ + L +L + +N L + P LV ++++ N + F
Sbjct: 226 -VRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFV-----K 276
Query: 357 CFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416
LE L +SNN L L + LK L+L NH + + + L+ LY+ N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 334
Query: 417 NISGNIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRN----NISGSLP 471
+I + L L + + +N + + + F + + D ++
Sbjct: 335 SIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGL 391
Query: 472 SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP 531
C L + + ++ + + + D +N + L + I G+ +
Sbjct: 392 CCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN 451
Query: 532 LQL-CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILY 590
QL +N+L+ N Q L + + N + L +
Sbjct: 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE-IDTNLRRYRLPKDGLARSSDNLNKV 510
Query: 591 TNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH 650
+ + Q T L+ L ++ + + + +
Sbjct: 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570
Query: 651 NNLTGESPVTFSHMKQVESLDLSYNN 676
+ + + +++
Sbjct: 571 RQKVKQLEAKKNRNPDTRRVSHHHHH 596
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 84/533 (15%), Positives = 179/533 (33%), Gaps = 95/533 (17%)
Query: 130 CELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWL 189
+LQE +NL+ +P N+ ++++ N + L
Sbjct: 8 VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRL 65
Query: 190 SNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPK 249
+ + + LE N+ L L S+ + + + P+
Sbjct: 66 RDCLDRQAHELE--LNNLGLSSLPELP--------------PHLESLVASCNSLTEL-PE 108
Query: 250 FLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLP-IHCHKNLRV 308
L + + L+ P L+ L + N L LP + L++
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEK---LPELQNSSFLKI 157
Query: 309 LDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN 368
+DV NN L+ ++ ++ P+L + N +P N +L + NN
Sbjct: 158 IDVDNNSLK-----KLPDLPPSLEFIAAGNNQLE-ELP-ELQN-----LPFLTAIYADNN 205
Query: 369 SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGN 428
SL+ +L L+ + N + L N L +Y +N + +P +
Sbjct: 206 SLK-KLPD---LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS 258
Query: 429 LSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNM 488
L L+ + +N L +P L L++ + + +S P N+ ++ S N
Sbjct: 259 LEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPP------NLYYLNASSNE 308
Query: 489 LQG--PLLG-----DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQ 541
++ L ++S N+L +P P+L LI + N L E+P L+
Sbjct: 309 IRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPELPQ---NLK 360
Query: 542 LVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTN 601
+ + +N L + P ++ + + ++ L+ L+ + + +
Sbjct: 361 QLHVEYNPLR-EFPDIPESVE------DLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413
Query: 602 FTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLT 654
S+ L ++ +++ ++ H++
Sbjct: 414 I-------------PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 98/520 (18%), Positives = 176/520 (33%), Gaps = 98/520 (18%)
Query: 65 LFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMA------------SLKY 112
L + + N K+ + + N+ E
Sbjct: 16 PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75
Query: 113 LSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTEN 172
L L+N L + L + +L+ + N+L+ LP +L L + + + L++
Sbjct: 76 LELNNLGL--SSLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129
Query: 173 ISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQ 232
+E L +SNN + L N S LK I+ ++SL
Sbjct: 130 PPL--------LEYLGVSNNQLE---KLPELQNSSFLK--------IIDVDNNSLK---- 166
Query: 233 LTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL 292
P LE++ + L E P L+ L + N SL
Sbjct: 167 -------------KLPDLPPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSL 207
Query: 293 FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNT 352
LP +L + NN L E+ LP L + N ++P +
Sbjct: 208 KKLPDLP----LSLESIVAGNNIL--EELPELQN-LPFLTTIYADNNLLK-TLPDLPPS- 258
Query: 353 WPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLY 412
LE L + +N L L +LT L + + + N L L
Sbjct: 259 -------LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG----LSELPPN---LYYLN 303
Query: 413 ISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS 472
S N I ++ +L L+ + NN+L +P+ + LE L S N+++ +P
Sbjct: 304 ASSNEIR-SLCDLPPSLEELN---VSNNKLIE-LPALPPR---LERLIASFNHLA-EVP- 353
Query: 473 CSSPFNIRRVHLSKNMLQG--PLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530
P N++++H+ N L+ + + R+NS++ + L+ L + N L E
Sbjct: 354 -ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EF 411
Query: 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNH 570
P + L++ + + + E +H
Sbjct: 412 PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 44/329 (13%)
Query: 377 KEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIM 436
+ + T L+ ++ + ++P N + Y + + N P G +
Sbjct: 6 RNVSNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64
Query: 437 MPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG--PLL 494
+ + C R L+L+ +S SLP P ++ + S N L L
Sbjct: 65 LRD-----------CLDRQAHELELNNLGLS-SLP--ELPPHLESLVASCNSLTELPELP 110
Query: 495 GDLSY-NRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQ 553
L N+N+ + P L YL ++NN LE ++P +L + L+++D+ +N+L +
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-K 167
Query: 554 IPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEV 613
+P ++ F +N ++ P++ LP L +Y + ++ K L +
Sbjct: 168 LPDLPPSLEFIAAGNNQ--LEELPELQ-NLPFLTAIYADNNSLKKLPDL----------- 213
Query: 614 QPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLS 673
S+ + N L E ++ L + T+ +N L +E+L++
Sbjct: 214 --PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK----TLPDLPPSLEALNVR 265
Query: 674 YNNLNGKIPPRLIELNALAVFSVAFNNLS 702
N L +P L L V F+ LS
Sbjct: 266 DNYLT-DLPELPQSLTFLDVSENIFSGLS 293
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 4e-16
Identities = 63/390 (16%), Positives = 123/390 (31%), Gaps = 97/390 (24%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
L+ ++ L +P+E + + A + + + P G
Sbjct: 11 TFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGE------------ 56
Query: 364 VLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP 423
++ + L L+ + +P+ + L+ L S N+++ +P
Sbjct: 57 ----QREMAVSRLRDCLDRQAHELELNNLG-LSSLPELPPH---LESLVASCNSLT-ELP 107
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVH 483
+L L L P LE L +S N + LP + ++ +
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPELQNSSFLKIID 159
Query: 484 LSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLV 543
+ N L +PD P L ++ NN LE E+P +L L L +
Sbjct: 160 VDNNSL--------------KKLPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAI 200
Query: 544 DLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFT 603
+N+L ++P + L+ + + + L
Sbjct: 201 YADNNSLK-KLPDLPLS-------------------------LESIVAGNNILEELPELQ 234
Query: 604 TKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSH 663
L ++ + N L +P L ++ + +L
Sbjct: 235 N-----------LPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL------- 275
Query: 664 MKQVESLDLSYNNLNG--KIPPRLIELNAL 691
+ + LD+S N +G ++PP L LNA
Sbjct: 276 PQSLTFLDVSENIFSGLSELPPNLYYLNAS 305
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 55/314 (17%), Positives = 97/314 (30%), Gaps = 81/314 (25%)
Query: 64 SLFTSFQQLELLDLS---------ILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLS 114
L LE + + N L D +N + +L SL+ L+
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD-----NNLLKTLPDLPPSLEALN 263
Query: 115 LSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENIS 174
+ ++YL L + L +L + LS P NL YL L +
Sbjct: 264 VRDNYLTD--LPELPQSLTFLDVSENIFSGLSELPP----NLYYLNASSNEIRSLCDLPP 317
Query: 175 SSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLT 234
S +EEL +SNN + P +L+ S + L
Sbjct: 318 S--------LEELNVSNNKLI-ELPALP----PRLERLI--------ASFNHLA------ 350
Query: 235 SISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFG 294
P+ + L+ + + + L EFP+ + ++ L + +
Sbjct: 351 -----------EVPELPQN---LKQLHVEYNPLR-EFPDIP----ESVEDLRMNSHLAEV 391
Query: 295 PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWP 354
P +NL+ L V N L+ P ++ L + + + T
Sbjct: 392 PELP-----QNLKQLHVETNPLR-EFPDIPE----SVEDLRMNSERVVDPYEFAHETT-- 439
Query: 355 WGCFYLEYLVLSNN 368
LE V ++
Sbjct: 440 ---DKLEDDVFEHH 450
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 9e-23
Identities = 60/323 (18%), Positives = 105/323 (32%), Gaps = 40/323 (12%)
Query: 262 LSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCH-KNLRVLDVSNNKLQGHI 320
S N K ++ +L + L C L ++ L +
Sbjct: 16 NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SL 74
Query: 321 PIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFN 380
P + P + VL + NA S+P + LEYL +N L L
Sbjct: 75 PDNLP---PQITVLEITQNAL-ISLPELPAS--------LEYLDACDNRLS-TLPE---L 118
Query: 381 LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440
LK L++D N +P+ + L+ + +N ++ +P +L L + NN
Sbjct: 119 PASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTSLEVLS---VRNN 170
Query: 441 RLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYN 500
+L +P LE LD+S N + SLP+ P + + + N
Sbjct: 171 QLTF-LPE---LPESLEALDVSTNLLE-SLPA--VPVRN------HHSEETEIFFRCREN 217
Query: 501 RLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYN 560
R+ ++IP+ + L +IL +N L + L S
Sbjct: 218 RI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276
Query: 561 ISFNYREDNHDLFDQDPQILYQL 583
+ + Q+
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQI 299
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 3e-17
Identities = 53/297 (17%), Positives = 99/297 (33%), Gaps = 65/297 (21%)
Query: 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKL 316
+ L+ LNL+ LP + + VL+++ N L
Sbjct: 61 FSELQLNRLNLSS----------------------------LPDNLPPQITVLEITQNAL 92
Query: 317 QGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFS 376
+P +L L+ N + ++P + L++L + NN L +
Sbjct: 93 I-SLPELPA----SLEYLDACDNRLS-TLPELPAS--------LKHLDVDNNQL--TMLP 136
Query: 377 KEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIM 436
+ L+ +N D N + +P+ ++ L+ L + +N ++ +P +L LD
Sbjct: 137 EL--PALLEYINADNNQ-LTMLPELPTS---LEVLSVRNNQLTF-LPELPESLEALDVS- 188
Query: 437 MPNNRLEGPIPSAFCQLRHLE----ILDLSRNNISGSLPSC-SSPFNIRRVHLSKNMLQG 491
N LE +P+ + H E N I+ +P S + L N L
Sbjct: 189 --TNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244
Query: 492 PLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEG-EMPLQLCWLNKLQLVDLSH 547
+ L + PD+ N L W + + D+S
Sbjct: 245 RIRESL---SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 2e-15
Identities = 64/388 (16%), Positives = 112/388 (28%), Gaps = 98/388 (25%)
Query: 328 LPNLVVLNVATNAFNG---SIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL-FSKEFNLTK 383
LP +++ N+F + + + W E L + + KE + +
Sbjct: 5 LPINNNFSLSQNSFYNTISGTYADYFSAWDK----WEKQALPGENRNEAVSLLKECLINQ 60
Query: 384 LKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLE 443
L L+ + + +P L + L I+ N + ++P +L +LD +NRL
Sbjct: 61 FSELQLNRLN-LSSLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNRLS 113
Query: 444 GPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLN 503
+P L+HL D+ N ++ LP P + ++ N L
Sbjct: 114 T-LPELPASLKHL---DVDNNQLT-MLPE--LPALLEYINADNNQLT------------- 153
Query: 504 SNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISF 563
+P+ L L + NN L +P L L D+S N L
Sbjct: 154 -MLPEL---PTSLEVLSVRNNQLT-FLPELPESLEAL---DVSTNLLE------------ 193
Query: 564 NYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLD 623
P + + +
Sbjct: 194 -----------SLPAVPVRNHHSEETEIF-----------------------------FR 213
Query: 624 LSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPP 683
N+ I IP I L T+ L N L+ S + S +Q D + +
Sbjct: 214 CRENR-ITHIPENILSLDPTCTIILEDNPLS--SRIRESLSQQTAQPDYHGPRIYFSMSD 270
Query: 684 RLIELNALAVFSVAFNNLSGKTPDRVAQ 711
+ V+Q
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQ 298
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 5e-13
Identities = 63/381 (16%), Positives = 104/381 (27%), Gaps = 98/381 (25%)
Query: 103 MSELMASLKYLSLSNSYLNGTI------LDQGLCELVYLQEVNIDRNNLSGSLPWCLANL 156
MS ++ SLS + TI + +RN L CL +
Sbjct: 1 MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58
Query: 157 TYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDI 216
L ++ L+ S P I L ++ N
Sbjct: 59 NQFSELQLNRLNLS----SLPDNLPPQITVLEITQN------------------------ 90
Query: 217 YAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLL 276
L S+ P+ LEY+D L+ P
Sbjct: 91 ---------------ALISL-----------PELP---ASLEYLDACDNRLS-TLPELP- 119
Query: 277 EKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVL 334
LK L + N +++ P L ++ NN+L + E+ +L VL
Sbjct: 120 ---ASLKHLDVDNNQLTMLPELP------ALLEYINADNNQLT-----MLPELPTSLEVL 165
Query: 335 NVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQG---QLFSKEFNLTKLKRLNLDG 391
+V N +P + LE L +S N L+ +
Sbjct: 166 SVRNNQLT-FLPELPES--------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216
Query: 392 NHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFC 451
N I IP+ + + + + DN +S I L + P +
Sbjct: 217 NR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQ 273
Query: 452 QLRHLEILDLSRNNISGSLPS 472
H + D + S
Sbjct: 274 NTLHRPLADAVTAWFPENKQS 294
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 3e-12
Identities = 51/339 (15%), Positives = 95/339 (28%), Gaps = 88/339 (25%)
Query: 143 NNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEP 202
+ L + N+ + + + EL L+
Sbjct: 23 SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS---ELQLNRL---------- 69
Query: 203 FFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDL 262
L+S+ + P+ + +++
Sbjct: 70 -----------------------------NLSSLP------DNLPPQ-------ITVLEI 87
Query: 263 SHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPI 322
+ L P L+ L + L LP +L+ LDV NN+L
Sbjct: 88 TQNALI-SLPELP----ASLEYLDACDNRLST---LPELP-ASLKHLDVDNNQLT----- 133
Query: 323 EIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLT 382
+ E+ L +N N +P + LE L + NN L L
Sbjct: 134 MLPELPALLEYINADNNQLT-MLPELPTS--------LEVLSVRNNQLT-FLPEL---PE 180
Query: 383 KLKRLNLDGNHFIGDIPKTLSNCSALQ----GLYISDNNISGNIPTRLGNLSFLDAIMMP 438
L+ L++ N + +P + +N I+ +IP + +L I++
Sbjct: 181 SLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477
+N L I + Q R S S ++
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 5e-06
Identities = 53/281 (18%), Positives = 89/281 (31%), Gaps = 71/281 (25%)
Query: 63 ASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNG 122
A F+++ + E L N S L+ L+ L L+ L
Sbjct: 27 ADYFSAWDKWEKQALPGENRNEAV------------SLLKEC-LINQFSELQLNRLNL-- 71
Query: 123 TILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLT 182
+ L L + + I +N L SLP A+L YL D + L E +S
Sbjct: 72 SSLPDNLPPQ--ITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPELPAS------- 121
Query: 183 YIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHG 242
++ L + NN + P + L++ + D QLT +
Sbjct: 122 -LKHLDVDNNQLT-MLPELP----ALLEYINAD--------------NNQLTML------ 155
Query: 243 DSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHC 302
P+ LE + + + LT P + L+ L + L P
Sbjct: 156 -----PELPTS---LEVLSVRNNQLT-FLPELP----ESLEALDVSTNLLES-LPAVPVR 201
Query: 303 HKNLR----VLDVSNNKLQGHIPIEIGEVLPNLVVLNVATN 339
+ + N++ HIP I L + + N
Sbjct: 202 NHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDN 240
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 71/363 (19%), Positives = 126/363 (34%), Gaps = 73/363 (20%)
Query: 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKL 316
+++ LT P+ L + L + + +L P LR L+VS N+L
Sbjct: 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNL-TSLPALP---PELRTLEVSGNQL 93
Query: 317 QGHIPIEIG----------------EVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYL 360
+P+ + L L + N S+P L
Sbjct: 94 T-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLPPG--------L 143
Query: 361 EYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG 420
+ L +S+N QL S ++L +L N + +P S LQ L +SDN ++
Sbjct: 144 QELSVSDN----QLASLPALPSELCKLWAYNNQ-LTSLPMLPSG---LQELSVSDNQLA- 194
Query: 421 NIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIR 480
++PT L L A NNRL +P+ L+ L +S N ++ SLP P ++
Sbjct: 195 SLPTLPSELYKLWAY---NNRLT-SLPA---LPSGLKELIVSGNRLT-SLPV--LPSELK 244
Query: 481 RVHLSKNMLQG--PLLG-----DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQ 533
+ +S N L L + N+L + +P+ + L + L N L
Sbjct: 245 ELMVSGNRLTSLPMLPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLS---ERT 300
Query: 534 LCWLNKLQLVDLSHNNLS---------GQIPHCLYNISFNYREDNHDLFDQDPQILYQLP 584
L L ++ + + L+ + ++ + +
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360
Query: 585 QLQ 587
Q
Sbjct: 361 QED 363
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 1e-21
Identities = 75/399 (18%), Positives = 134/399 (33%), Gaps = 88/399 (22%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
VL+V + L +P + ++ L + N S+P+ L L
Sbjct: 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE--------LRTL 86
Query: 364 VLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP 423
+S N L L L +L + H +P S L L+I N ++ ++P
Sbjct: 87 EVSGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSG---LCKLWIFGNQLT-SLP 137
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVH 483
L L + +N+L +P+ +L L N ++ SLP P ++ +
Sbjct: 138 VLPPGLQELS---VSDNQLAS-LPALPSELCKL---WAYNNQLT-SLPM--LPSGLQELS 187
Query: 484 LSKNMLQG--PLLGDL-----SYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW 536
+S N L L +L NRL S +P L+ LI++ N L +P+
Sbjct: 188 VSDNQLASLPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLPSE 242
Query: 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596
L +L +S N L+ +P + N L +LP+
Sbjct: 243 LKEL---MVSGNRLT-SLPMLPSGLLSLSVYRNQ---------LTRLPE----------- 278
Query: 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE 656
+ L S + ++L N L + E++ +
Sbjct: 279 ---------------SLIHLSSETTVNLEGNPLSERTLQALREITS---APGYSGPIIRF 320
Query: 657 SPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695
S ++ +L L+ + +P R E +
Sbjct: 321 DMAGASAPRETRALHLA--AADWLVPAREGEPAPADRWH 357
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 3e-20
Identities = 67/329 (20%), Positives = 116/329 (35%), Gaps = 77/329 (23%)
Query: 381 LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440
LN+ + + +P L + + L I DNN++ ++P L L+ + N
Sbjct: 39 NNGNAVLNVGESG-LTTLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91
Query: 441 RLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG--PLLG--- 495
+L +P L L I ++ + P + ++ + N L L
Sbjct: 92 QLTS-LPVLPPGLLELSIFSNPLTHLP------ALPSGLCKLWIFGNQLTSLPVLPPGLQ 144
Query: 496 --DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQ 553
+S N+L S +P +L L NN L +P+ L +L +S N L+
Sbjct: 145 ELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-S 195
Query: 554 IPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEV 613
+P +L L+ + L
Sbjct: 196 LPT-------------------------LPSELYKLWAYNNRLTSLPAL----------- 219
Query: 614 QPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLS 673
+ L +S N+L +P+ EL L +S N LT P+ S + SL +
Sbjct: 220 --PSGLKELIVSGNRL-TSLPVLPSEL---KELMVSGNRLT-SLPMLPSGL---LSLSVY 269
Query: 674 YNNLNGKIPPRLIELNALAVFSVAFNNLS 702
N L ++P LI L++ ++ N LS
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 4e-17
Identities = 82/465 (17%), Positives = 136/465 (29%), Gaps = 87/465 (18%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
L A + L + ++ L T L EL L + N L+ SLP L L +
Sbjct: 57 DCLPAHITTLVIPDNNL--TSLPALPPELRTL---EVSGNQLT-SLPVLPPGLLELSIFS 110
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETS 223
L S + +LW+ N SL + E+ S
Sbjct: 111 NPLTHLPALPSG--------LCKLWIFGNQLT---SLPVLPPGLQ----------ELSVS 149
Query: 224 HSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLK 283
+ L P L + + LT P L+
Sbjct: 150 DNQLA-----------------SLPALPSE---LCKLWAYNNQLT-SLPMLP----SGLQ 184
Query: 284 RLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG 343
LS+ + L P L L NN+L +P L L V+ N
Sbjct: 185 ELSVSDNQLAS-LPTLPS---ELYKLWAYNNRLT-SLPALPS----GLKELIVSGNRLT- 234
Query: 344 SIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLS 403
S+P L+ L++S N L + L L++ N + +P++L
Sbjct: 235 SLPVLPSE--------LKELMVSGNRLTS--LPML--PSGLLSLSVYRNQ-LTRLPESLI 281
Query: 404 NCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAF--CQLRHLEILDL 461
+ S+ + + N +S L ++ P R + SA + HL D
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341
Query: 462 SRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLN--------SNIPDWMNRL 513
G + + + N + S+ +
Sbjct: 342 LVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAED 401
Query: 514 PQLR--YLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPH 556
LR +A +L++++ V L HN GQ +
Sbjct: 402 EALRANTFAMATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQYDN 446
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-12
Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 48/271 (17%)
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG--PLLG- 495
R C +L++ + ++ +LP C +I + + N L L
Sbjct: 25 RGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPA-HITTLVIPDNNLTSLPALPPE 82
Query: 496 ----DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551
++S N+L S +P L +L L +P LC L + N L+
Sbjct: 83 LRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLP-ALPSGLCKL------WIFGNQLT 134
Query: 552 GQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTY 611
+P + DN P + +L +L +N LT+
Sbjct: 135 -SLPVLPPGLQELSVSDNQ--LASLPALPSELCKLWAY----NNQ--LTSLPML------ 179
Query: 612 EVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLD 671
+ L +S N+L +P EL ++ N +L ++ L
Sbjct: 180 ----PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL-------PSGLKELI 227
Query: 672 LSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702
+S N L +P EL L V+ N L+
Sbjct: 228 VSGNRLTS-LPVLPSELKEL---MVSGNRLT 254
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 63/373 (16%), Positives = 99/373 (26%), Gaps = 99/373 (26%)
Query: 64 SLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGT 123
+L S QL L + L F+ N + L + L L + + L T
Sbjct: 85 TLEVSGNQLTSLPVLPPGLLELSIFS--------NPLTHLPALPSGLCKLWIFGNQL--T 134
Query: 124 ILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTY 183
L L L ++ N L+ SLP + L L + L S
Sbjct: 135 SLPVLPPGLQEL---SVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSG-------- 182
Query: 184 IEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSI-SLFGHG 242
++EL +S+N QL S+ +L
Sbjct: 183 LQELSVSDN---------------------------------------QLASLPTLPSE- 202
Query: 243 DSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHC 302
L + + LT P LK L + L LP
Sbjct: 203 --------------LYKLWAYNNRLT-SLPALP----SGLKELIVSGNRLTSLPVLP--- 240
Query: 303 HKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEY 362
L+ L VS N+L +P+ L+ L+V N +P S +
Sbjct: 241 -SELKELMVSGNRLT-SLPMLPS----GLLSLSVYRNQLT-RLPESLIH-----LSSETT 288
Query: 363 LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNI 422
+ L N L + +T + F AL + + +
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAR 346
Query: 423 PTRLGNLSFLDAI 435
Sbjct: 347 EGEPAPADRWHMF 359
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 2e-22
Identities = 69/366 (18%), Positives = 136/366 (37%), Gaps = 71/366 (19%)
Query: 297 PLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWG 356
P C +LRV+ S+ L+ +P ++ P+ +L++ N F N
Sbjct: 24 VCPFRCQCHLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLK--- 76
Query: 357 CFYLEYLVLSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYI 413
L L+L NN + F+ L KL+RL L N + ++P+ + LQ L +
Sbjct: 77 --NLHTLILINNKISKISPGAFA---PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRV 128
Query: 414 SDNNIS---GNIPTRLGNLSFLDAIMMPNNRL-EGPIPS-AFCQLRHLEILDLSRNNISG 468
+N I+ ++ L + ++ + N L I + AF ++ L + ++ NI+
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVE---LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184
Query: 469 SLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWM-NRLPQLRYLILANNGLE 527
++P P ++ +HL N + + + L L L L+ N +
Sbjct: 185 TIPQ-GLPPSLTELHLDGNKI--------------TKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 528 GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQ 587
L L+ + L++N L ++P L + +Q
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD----------------------HKYIQ 266
Query: 588 ILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL-IGEIPLQI-GELSRIHT 645
++Y ++N+ ++ + S SG+ L N + EI +
Sbjct: 267 VVYL-HNNN--ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323
Query: 646 LNLSHN 651
+ L +
Sbjct: 324 VQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 59/320 (18%), Positives = 114/320 (35%), Gaps = 60/320 (18%)
Query: 384 LKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLE 443
L+ + +PK L L + +N I+ NL L +++ NN++
Sbjct: 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 444 GPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ----GPLLG---- 495
P AF L LE L LS+N + LP P ++ + + +N + G
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQM 147
Query: 496 ---DLSYNRLNSNI--PDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550
+L N L S+ + +L Y+ +A+ + +P L L + L N +
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKI 204
Query: 551 SGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYT 610
+ ++ L L L L ++++ + N +
Sbjct: 205 T-KVD---------------------AASLKGLNNLAKLGLSFNSISAVDNGS------- 235
Query: 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG------ESPVTFSHM 664
+ + L L+ NKL+ ++P + + I + L +NN++ P +
Sbjct: 236 --LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292
Query: 665 KQVESLDLSYNNLN-GKIPP 683
+ L N + +I P
Sbjct: 293 ASYSGVSLFSNPVQYWEIQP 312
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 64/344 (18%), Positives = 117/344 (34%), Gaps = 59/344 (17%)
Query: 134 YLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNH 193
+L+ V L +P L LLD+ N++TE I NL + L L NN
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 87
Query: 194 FQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYH 253
IS F KL+ + S + QL + +
Sbjct: 88 IS-KISPGAFAPLVKLE--------RLYLSKN------QLKELP------EKMPKT---- 122
Query: 254 QHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDV 311
L+ + + N + + ++ + L + G K L + +
Sbjct: 123 ---LQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 312 SNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN--- 368
++ + IP + P+L L++ N +S G L L LS N
Sbjct: 179 ADTNIT-TIP---QGLPPSLTELHLDGNKITKVDAASLK-----GLNNLAKLGLSFNSIS 229
Query: 369 SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG------NI 422
++ + N L+ L+L+ N + +P L++ +Q +Y+ +NNIS
Sbjct: 230 AVDNGSLA---NTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
Query: 423 PTRLGNLSFLDAIMMPNNRLEGPI--PSAFCQLRHLEILDLSRN 464
P + + + +N ++ PS F + + L
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 41/288 (14%), Positives = 99/288 (34%), Gaps = 34/288 (11%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
+ F + + L L L + AF+ + L+ L LS + L
Sbjct: 67 IKDGDFKNLKNLHTLILINNKISKISP------GAFAP--------LVKLERLYLSKNQL 112
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTE-NISSSPLM 179
L + + LQE+ + N ++ L + ++++ N L I +
Sbjct: 113 --KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239
+ + + +++ + +I + ++L I +++ +SL L + L
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKI-TKVDA--ASLKGLNNLAKLGLS 224
Query: 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL-------VNISL 292
+ S + L + L + L++ L + P L + +K ++ + L + +
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD-HKYIQVVYLHNNNISAIGSND 282
Query: 293 FGPFPLPIHCHKNLRVLDVSNNKLQGH-IPIEIGEVLPNLVVLNVATN 339
F P + + + +N +Q I + + +
Sbjct: 283 FCPPGYNTKKA-SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 38/217 (17%)
Query: 107 MASLKYLSLS-NSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVS 165
+ + + L N + I + + L + I N++ +LT L L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL---D 200
Query: 166 FNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHS 225
N++T+ + ++ L L + +L LS N ++ N L+ E+ +++
Sbjct: 201 GNKITK-VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLR--------ELHLNNN 250
Query: 226 SLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTR-----EFPNWLLEKNK 280
L P L ++ V L + N++ P K
Sbjct: 251 KLV-----------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293
Query: 281 KLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVSNNK 315
+SL + + + P C + + N K
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 87/505 (17%), Positives = 168/505 (33%), Gaps = 75/505 (14%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L S S +L +L +S + L+ + F E L+YL LS+
Sbjct: 36 LWTSDILSLSKLRILIISHNRIQYLD----------ISVFKFNQE----LEYLDLSH--- 78
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
N L + L+ LD+SFN N
Sbjct: 79 ----------------------NKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGN 113
Query: 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFG 240
++ ++ L LS H + S+ P + + K E F S+ +
Sbjct: 114 MSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172
Query: 241 HGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPI 300
+ F+ +L N+ L S F +
Sbjct: 173 PTNK--EFHFILDVSVKTVANLELSNIKCV--------------LEDNKCSYFLSILAKL 216
Query: 301 HCHKNLRVLDVSNNKLQGHIPIEIGEVL--PNLVVLNVATNAFNGSIPSSFGNTWPWGCF 358
+ L L ++N + + I I +++ + +++ G + +
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
L + ++ + + N + S S L S+N +
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Query: 419 SGNIPTRLGNLSFLDAIMMPNNRLE--GPIPSAFCQLRHLEILDLSRNNISGSLP--SCS 474
+ + G+L+ L+ +++ N+L+ I Q++ L+ LD+S+N++S CS
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396
Query: 475 SPFNIRRVHLSKNMLQGPLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNG 525
++ +++S N+L + DL N++ S IP + +L L+ L +A+N
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQ 455
Query: 526 LEGEMPLQLCWLNKLQLVDLSHNNL 550
L+ L LQ + L N
Sbjct: 456 LKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 3e-20
Identities = 81/466 (17%), Positives = 159/466 (34%), Gaps = 66/466 (14%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
+L L++S +Y++ + + L L+ + I N + L LD
Sbjct: 17 KDLSQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETS 223
+S N+L IS P +NL + L LS N F ++ + F
Sbjct: 76 LSHNKLV-KISCHPTVNLKH---LDLSFNAFD-ALPICKEF------------------- 111
Query: 224 HSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLK 283
+++ QL + L + H + V L E + ++ +
Sbjct: 112 -GNMS---QLKFLGLSTTHLEKSSVLPIAHLNIS-KVLLVLGETYGEKEDPEGLQDFNTE 166
Query: 284 RLSLVNISLFGPFPLPIHCHKNLRVLDVSNNK--LQGHIPIEIGEVLPNLVVLNVATNAF 341
L +V + + K + L++SN K L+ + +L L +N
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226
Query: 342 NGSIPSSFGNTWPWGCFY----LEYLVLSNNSLQGQLFSKEF-----NLTKLKRLNLDGN 392
+I +++ + + Y +SN LQGQL ++F +L L + +
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286
Query: 393 HFIGDIPKTLSNCSALQGLYISDNN---ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSA 449
F S + + + + P+++ LD NN L +
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD---FSNNLLTDTVFEN 343
Query: 450 FCQLRHLEILDLSRNNISGSLPSCSSPF----NIRRVHLSKNMLQGPLLGDLSYNRLNSN 505
L LE L L N + L + +++++ +S+N +
Sbjct: 344 CGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVS---------YDEKKG 393
Query: 506 IPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551
W L L +++N L + L +++++DL N +
Sbjct: 394 DCSW---TKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 2e-18
Identities = 71/411 (17%), Positives = 130/411 (31%), Gaps = 41/411 (9%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
+ +L++S N + + L L +L ++ N S F LEYL
Sbjct: 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-----ELEYL 74
Query: 364 VLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIG-DIPKTLSNCSALQGLYISDNNISGNI 422
LS+N L LK L+L N F I K N S L+ L +S ++ +
Sbjct: 75 DLSHNKLVKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131
Query: 423 PTRLGNLSFLDAIMMPNNRLEGPIPSAF---CQLRHLEILDLSRNNISGSLPSCSSPFNI 479
+ +L+ +++ L I+ + L
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191
Query: 480 RRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
+ K +L+ ++ L N+ + LQL W
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR---ILQLVWHTT 248
Query: 540 LQLVDLSHNNLSGQIPHCLYNISFN------YREDNHDLFDQDPQILY-QLPQLQILYTN 592
+ +S+ L GQ+ ++ S + D+F +Y + I
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308
Query: 593 YHNHK--------YLTNFTTK-------QRLYTYEVQPLHSMSGLDLSCNKL--IGEIPL 635
+ ++ F L + L L N+L + +I
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368
Query: 636 QIGELSRIHTLNLSHNNLT-GESPVTFSHMKQVESLDLSYNNLNGKIPPRL 685
++ + L++S N+++ E S K + SL++S N L I L
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 68 SFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQ 127
++L + K+L+ ++ + + SL L++S++ L TI
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR- 417
Query: 128 GLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187
C ++ +++ N + S+P + L L+ L+V+ NQL + LT ++++
Sbjct: 418 --CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKI 473
Query: 188 WLSNNHFQ 195
WL N +
Sbjct: 474 WLHTNPWD 481
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 49/392 (12%), Positives = 98/392 (25%), Gaps = 78/392 (19%)
Query: 300 IHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFY 359
H L + + + + +S
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWHSAWRQANSNN--------- 57
Query: 360 LEYLVLSNNSLQGQLFS-KEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
+ + +L+ ++ L L + P S LQ + I +
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGL 116
Query: 419 SGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFN 478
+P + + L+ + + N L +P++ L L L + LP
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE-----P 169
Query: 479 IRRVHLSKNMLQGPLLG--DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW 536
+ S L L + + S +P + L L+ L + N+ L + +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227
Query: 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596
L KL+ +DL P I L+ L
Sbjct: 228 LPKLEELDLRGCTALRNY----------------------PPIFGGRAPLKRL------- 258
Query: 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE 656
L + +PL I L+++ L+L
Sbjct: 259 --------------------------ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 657 SPVTFSHMKQVESLDLSYNNLNGKIPPRLIEL 688
P + + + + + R +
Sbjct: 293 LPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 7e-21
Identities = 54/334 (16%), Positives = 98/334 (29%), Gaps = 46/334 (13%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
+ + + L G+ + LS Q Y +D N + R N +
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQ---WQRHYNADRNRW-HSAWRQANSNNPQIETRTG 65
Query: 440 NRLEG-PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRR-VHLSKNMLQGPLLGDL 497
L+ L+L + P F + H+ +
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHM-----------TI 111
Query: 498 SYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHC 557
L +PD M + L L LA N L +P + LN+L+ + + ++P
Sbjct: 112 DAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169
Query: 558 LYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLH 617
L + L LQ L + + L + L
Sbjct: 170 LASTDA-------------SGEHQGLVNLQSLRLEWTGIRSLPA----------SIANLQ 206
Query: 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677
++ L + + L + I L ++ L+L P F ++ L L +
Sbjct: 207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 678 NGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQ 711
+P + L L + + P +AQ
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 6e-19
Identities = 53/348 (15%), Positives = 104/348 (29%), Gaps = 51/348 (14%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ + + L+ D + S+ N + +
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIETRTGRAL 68
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
+ + L + L FP +
Sbjct: 69 KATADLLEDATQPGRVALE--------LRSVPLP-----------------QFPDQAFRL 103
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
L+++ + L E P+ + ++ L+ L+L L P I LR L +
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPL-RALPASIASLNRLRELSIRAC 160
Query: 315 KLQGHIPIEIGEV--------LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLS 366
+P + L NL L + S+P+S N L+ L +
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-----LQNLKSLKIR 214
Query: 367 NNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTR 425
N+ L +L KL+ L+L G + + P + L+ L + D + +P
Sbjct: 215 NSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 426 LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSC 473
+ L+ L+ + + +PS QL I+ + ++ L
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 54/335 (16%), Positives = 104/335 (31%), Gaps = 75/335 (22%)
Query: 20 KHDFFNNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNA----SLFTSFQQLELL 75
+H + + A + N+ ++ + + D +L L
Sbjct: 37 RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF 96
Query: 76 DLSILNFKNLEYFNMDFC--TAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELV 133
+L++ +D ++ Q + L+ L+L+ + L L + L
Sbjct: 97 PDQAFRLSHLQHMTIDAAGLMELPDTMQQFA----GLETLTLARNPL--RALPASIASLN 150
Query: 134 YLQEVNIDRNNLSGSLP---------WCLANLTYLRLLDVSFNQLTENISSSPLMNLTYI 184
L+E++I LP L L+ L + + + + +S + NL +
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPAS-IANLQNL 208
Query: 185 EELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDS 244
+ L + N+ L+++
Sbjct: 209 KSLKIRNS---------------------------------------PLSAL-------- 221
Query: 245 GIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHK 304
++H LE +DL R +P LKRL L + S PL IH
Sbjct: 222 ---GPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLT 277
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATN 339
L LD+ +P I + LP ++ V +
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPH 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 7e-20
Identities = 60/288 (20%), Positives = 97/288 (33%), Gaps = 34/288 (11%)
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFP---LPIHCHKNLRVLDV 311
LEY+ + K+ LKRL++ + L + L+ L +
Sbjct: 43 RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102
Query: 312 SNNKLQGHIPIEIGE-VLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSL 370
N ++ G P + E P+L +LN+ N + + W L+ L ++
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNL-RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 371 QGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLS 430
+ L L+L N +G+ + C P + L
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALC-----------------PLKFPTLQ 204
Query: 431 FLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP--SCSSPFNIRRVHLSKNM 488
L G + L+ LDLS N++ + SC P + ++LS
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264
Query: 489 LQGPLLG--------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEG 528
L+ G DLSYNRL+ N LPQ+ L L N
Sbjct: 265 LKQVPKGLPAKLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 47/255 (18%), Positives = 81/255 (31%), Gaps = 30/255 (11%)
Query: 256 DLEYVDLSHLNLTREFPNWLLE--KNKKLKRLSLVNISLFGPFPLPIH--CHKNLRVLDV 311
L+ + + + L L+ L+L N+ + G P P+ +L +L++
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 312 SNNKLQG---HIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN 368
N + + P L VL++A + +P L L LS+N
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFP----ALSTLDLSDN 183
Query: 369 SLQGQLFSKE----FNLTKLKRLNLDGNHF---IGDIPKTLSNCSALQGLYISDNNISGN 421
G+ L+ L L G + LQGL +S N++
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243
Query: 422 IP----TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477
L+ L+ + L+ L +LDLS N + PS
Sbjct: 244 AGAPSCDWPSQLNSLN---LSFTGLKQVPK---GLPAKLSVLDLSYNRLD-RNPSPDELP 296
Query: 478 NIRRVHLSKNMLQGP 492
+ + L N
Sbjct: 297 QVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 4e-14
Identities = 58/350 (16%), Positives = 94/350 (26%), Gaps = 95/350 (27%)
Query: 362 YLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLS---NCSALQGLYISDNNI 418
L + F+ LKRL + I S LQ L + + +
Sbjct: 48 LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107
Query: 419 SGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFN 478
+G P L + D L IL+L + + +
Sbjct: 108 TGTAPPPLLEATGPD----------------------LNILNLRNVSWATRDAWLAELQQ 145
Query: 479 IRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL----QL 534
+ L ++ + + + P L L L++N GE L
Sbjct: 146 WLKPGLKVL--------SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197
Query: 535 CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYH 594
LQ++ L + + + QLQ L
Sbjct: 198 LKFPTLQVLALRNAGME-------------------TPSGVCSALAAARVQLQGL----- 233
Query: 595 NHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGE-LSRIHTLNLSHNNL 653
DLS N L + S++++LNLS L
Sbjct: 234 ----------------------------DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265
Query: 654 TGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSG 703
+ ++ LDLSYN L+ P EL + S+ N
Sbjct: 266 KQVPKGLPA---KLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 8e-14
Identities = 54/295 (18%), Positives = 92/295 (31%), Gaps = 60/295 (20%)
Query: 109 SLKYLSLSNSYLNGTILDQGLCELVY--LQEVNIDRNNLSGSLPW-----CLANLTYLRL 161
SLK L++ + + IL L L LQE+ ++ ++G+ P +L L L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 162 LDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIE 221
+VS+ ++ ++ L ++ H + S E L D
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDL------- 180
Query: 222 TSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKK 281
S + L L FP L+ + L + +
Sbjct: 181 -SDNPE-----LGERGLISALCPLKFPT-------LQVLALRNAGME------------- 214
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
+ G L+ LD+S+N L+ + L LN++
Sbjct: 215 ---------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIG 396
+P L L LS N L L ++ L+L GN F+
Sbjct: 266 K-QVPKGLPAK-------LSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 1e-12
Identities = 53/308 (17%), Positives = 83/308 (26%), Gaps = 79/308 (25%)
Query: 360 LEYLVLSNNSLQGQLFS---KEFNLTKLKRLNLDGNHFIGDIPKTLSNCS--ALQGLYIS 414
L+ L + + ++ + ++ L+ L L+ G P L + L L +
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129
Query: 415 DNNISG--NIPTRLGNLSF--LDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSL 470
+ + + L L + + L LDLS N G
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189
Query: 471 PSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLE--- 527
S+ + P L+ L L N G+E
Sbjct: 190 GLISALCP--------------------------------LKFPTLQVLALRNAGMETPS 217
Query: 528 GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQ 587
G +LQ +DLSHN+L QL
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAG---------------------APSCDWPSQLN 256
Query: 588 ILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLN 647
L + L +S LDLS N+L P EL ++ L+
Sbjct: 257 SLNLS-FTG--LKQVPK---------GLPAKLSVLDLSYNRL-DRNPS-PDELPQVGNLS 302
Query: 648 LSHNNLTG 655
L N
Sbjct: 303 LKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 56/308 (18%), Positives = 91/308 (29%), Gaps = 23/308 (7%)
Query: 152 CLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNH---SK 208
C N + + S +E L + +
Sbjct: 13 CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72
Query: 209 LKFFDGDIYAEIETSHSSLTPKFQLTSISL--FGHGDSGIFPKFLYHQHDLEYVDLSHLN 266
L I + I + L ++L + P DL ++L +++
Sbjct: 73 LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132
Query: 267 LTREFPNWLLE----KNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPI 322
WL E LK LS+ + L LD+S+N G +
Sbjct: 133 WA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191
Query: 323 E---IGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF 379
P L VL + PS + L+ L LS+NSL+ +
Sbjct: 192 ISALCPLKFPTLQVLALRNAGME--TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249
Query: 380 -NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN-IPTRLGNLSFLDAIMM 437
++L LNL + +PK L + L L +S N + N P L + L +
Sbjct: 250 DWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLS---L 303
Query: 438 PNNRLEGP 445
N
Sbjct: 304 KGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 8e-10
Identities = 45/252 (17%), Positives = 83/252 (32%), Gaps = 15/252 (5%)
Query: 465 NISGSLPSCSSPFN---IRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLIL 521
N S P SS FN V L L + + + L+ L +
Sbjct: 16 NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75
Query: 522 ANNGLEGEMP---LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQ 578
+ + L++ ++ LQ + L + ++G P L + +
Sbjct: 76 RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135
Query: 579 ILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQI- 637
L +LQ + +V+ ++S LDLS N +GE L
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194
Query: 638 ---GELSRIHTLNLSHNNLT---GESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNA 690
+ + L L + + G + Q++ LDLS+N+L + +
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254
Query: 691 LAVFSVAFNNLS 702
L +++F L
Sbjct: 255 LNSLNLSFTGLK 266
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 33/151 (21%), Positives = 49/151 (32%), Gaps = 23/151 (15%)
Query: 61 LNASLFTSFQQLELLDLS---------------ILNFKNLEYFNMDFC--TAFSNSFLQM 103
+ F L LDLS L F L+ + S +
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
+ L+ L LS++ L L +N+ L +P L L +LD
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLD 280
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+S+N+L N S L + L L N F
Sbjct: 281 LSYNRLDRNPSPDELPQVG---NLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 7e-06
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 7/129 (5%)
Query: 73 ELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSN------SYLNGTILD 126
L +L L+ ++ + + S Q+ +L L LS+ L +
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PALSTLDLSDNPELGERGLISALCP 197
Query: 127 QGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEE 186
L L N SG A L+ LD+S N L + + + +
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257
Query: 187 LWLSNNHFQ 195
L LS +
Sbjct: 258 LNLSFTGLK 266
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 77/363 (21%), Positives = 133/363 (36%), Gaps = 66/363 (18%)
Query: 297 PLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWG 356
P CH +LRV+ S+ L+ +P EI P+ +L++ N + F
Sbjct: 26 MCPFGCHCHLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQ--- 78
Query: 357 CFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD 415
+L LVL NN + ++ K F L KL++L + NH + +IP L S+L L I D
Sbjct: 79 --HLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHD 132
Query: 416 NNIS---GNIPTRLGNLSFLDAIMMPNNRL-EGPIPSAFCQLRHLEILDLSRNNISGSLP 471
N I + + L N++ ++ M N L L L +S ++ +P
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIE---MGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP 188
Query: 472 SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWM-NRLPQLRYLILANNGLEGEM 530
P + +HL N + I R +L L L +N +
Sbjct: 189 K-DLPETLNELHLDHNKI--------------QAIELEDLLRYSKLYRLGLGHNQIRMIE 233
Query: 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILY 590
L +L L+ + L +N LS ++P L + L LQ++Y
Sbjct: 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPD----------------------LKLLQVVY 270
Query: 591 TNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL-IGEIPLQIGE-LSRIHTLNL 648
+ N+ +T +G+ L N + E+ ++ +
Sbjct: 271 LH-TNN--ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327
Query: 649 SHN 651
+
Sbjct: 328 GNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 9e-17
Identities = 57/282 (20%), Positives = 100/282 (35%), Gaps = 41/282 (14%)
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
L + L + N + +KL++L + L +P + +L L + +N
Sbjct: 78 QHLYALVLVN-NKISKIHEKAFSPLRKLQKLYISKNHLVE---IPPNLPSSLVELRIHDN 133
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSI--PSSFGNTWPWGCFYLEYLVLSNN---S 369
+++ +P + L N+ + + N S P +F L YL +S
Sbjct: 134 RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL------KLNYLRISEAKLTG 186
Query: 370 LQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNNISGNIPTR-LG 427
+ L L L+LD N I I L S L L + N I I L
Sbjct: 187 IPKDLPET------LNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLS 238
Query: 428 NLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS---CSSPFNIRRVHL 484
L L + + NN+L +P+ L+ L+++ L NNI+ + C F ++R +
Sbjct: 239 FLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYY 296
Query: 485 SKNMLQGPLLGDLSYNRLNSNI--PDWMNRLPQLRYLILANN 524
+ L N + P + + N
Sbjct: 297 NGI--------SLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 62/345 (17%), Positives = 114/345 (33%), Gaps = 62/345 (17%)
Query: 134 YLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNH 193
+L+ V L ++P ++ LLD+ N ++E + L ++ L L NN
Sbjct: 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNK 89
Query: 194 FQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYH 253
I + F KL+ ++ S + L I +
Sbjct: 90 IS-KIHEKAFSPLRKLQ--------KLYISKN------HLVEI------PPNLPSS---- 124
Query: 254 QHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL-FGPFPLPIHCHKNLRVLDVS 312
L + + N R+ P + + + + + L F L L +S
Sbjct: 125 ---LVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180
Query: 313 NNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPS-SFGNTWPWGCFYLEYLVLSNN--- 368
KL IP ++ L L++ N +I L L L +N
Sbjct: 181 EAKLT-GIP---KDLPETLNELHLDHNKIQ-AIELEDL-----LRYSKLYRLGLGHNQIR 230
Query: 369 SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP----- 423
++ S L L+ L+LD N + +P L + LQ +Y+ NNI+ +
Sbjct: 231 MIENGSLS---FLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFC 285
Query: 424 --TRLGNLSFLDAIMMPNNRLEGPI--PSAFCQLRHLEILDLSRN 464
++ + I + NN + P+ F + +
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 56/320 (17%), Positives = 102/320 (31%), Gaps = 78/320 (24%)
Query: 384 LKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLE 443
L+ + +PK +S L + +N+IS L L A+++ NN++
Sbjct: 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 444 GPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLN 503
AF LR L+ L +S+N++ +P
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLV-EIPP------------------------------- 119
Query: 504 SNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISF 563
N L L + +N + L + +++ N L
Sbjct: 120 -------NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE------------ 160
Query: 564 NYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLD 623
F +L L + + +++ L
Sbjct: 161 -NSGFEPGAF--------DGLKLNYLRISEAKLTGIPKDL------------PETLNELH 199
Query: 624 LSCNKLIGEIPLQI-GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIP 682
L NK I I L+ S+++ L L HN + + S + + L L N L+ ++P
Sbjct: 200 LDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257
Query: 683 PRLIELNALAVFSVAFNNLS 702
L +L L V + NN++
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 37/216 (17%)
Query: 107 MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSF 166
+ ++ + + + L + + G + + L + I L+G L L L
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL---DH 202
Query: 167 NQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSS 226
N++ I L+ + + L L +N + I L+ E+ ++
Sbjct: 203 NKIQA-IELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLR--------ELHLDNNK 252
Query: 227 LTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLS 286
L+ P L L+ V L N+T+ N +KR
Sbjct: 253 LS-----------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295
Query: 287 LVNISLFG----PFPLP---IHCHKNLRVLDVSNNK 315
ISLF + + C + + N K
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 58/341 (17%), Positives = 93/341 (27%), Gaps = 88/341 (25%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L F Q L L L + AFS + L+ L +S ++L
Sbjct: 69 LRKDDFKGLQHLYALVLVNNKISKIHE------KAFSP--------LRKLQKLYISKNHL 114
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTEN-ISSSPLM 179
+ L L E+ I N + + L + +++ N L +
Sbjct: 115 --VEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239
L + L +S +LT I
Sbjct: 171 GLK-LNYLRISEA---------------------------------------KLTGIP-- 188
Query: 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPF- 296
+ L + L H + L + KL RL L + I +
Sbjct: 189 ----KDLPET-------LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGS 236
Query: 297 --PLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSF-GNTW 353
LP LR L + NNKL +P + L L V+ + TN + F +
Sbjct: 237 LSFLP-----TLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGF 289
Query: 354 PWGCFYLEYLVLSNNSLQGQLFSKE--FNLTKLKRLNLDGN 392
Y + L NN + +T +
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 48/301 (15%), Positives = 93/301 (30%), Gaps = 42/301 (13%)
Query: 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS---GNIPTRLGNLSFLDAIMMP 438
+K L+L N L C LQ L ++ N I+ + + LG+L LD +
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD---LS 108
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLS 498
N L S F L L L+L N +L S ++ ++ + +
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL----------RVG 157
Query: 499 YNRLNSNIPD-WMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHC 557
+ I L L L + + L+ P L + + + L +
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE- 215
Query: 558 LYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLH 617
D ++ L +F+ T +
Sbjct: 216 -------------IFVDV-------TSSVECLELR-DTDLDTFHFSELSTGETNSLIKKF 254
Query: 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677
+ + ++ L ++ + ++S + L S N L F + ++ + L N
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
Query: 678 N 678
+
Sbjct: 314 D 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 3e-16
Identities = 44/248 (17%), Positives = 92/248 (37%), Gaps = 13/248 (5%)
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV 364
NL+ L +++N + I + L +L L+++ N ++ SS W L +L
Sbjct: 77 NLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSS----WFKPLSSLTFLN 130
Query: 365 LSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIP-KTLSNCSALQGLYISDNNISGNI 422
L N + + F +LTKL+ L + I K + + L+ L I +++
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Query: 423 PTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482
P L ++ + +++ + + +E L+L ++ +
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD-TFHFSELSTGETNS 249
Query: 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542
+ K + ++ L + +N++ L L + N L+ L LQ
Sbjct: 250 LIKKFTFR---NVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305
Query: 543 VDLSHNNL 550
+ L N
Sbjct: 306 IWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 40/287 (13%), Positives = 96/287 (33%), Gaps = 32/287 (11%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
++ +++ N ++ L L+ L ++ N + I +L +E L LS N+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYL 112
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
++S F S L F + ++ ++ +F H
Sbjct: 113 S-NLSSSWFKPLSSLTFLNLL--------------GNPYKTLG-----ETSLF----SHL 148
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
L+ + + +++ + L+ L + L P + +N+ L +
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGN---TWPWGCFYLEYLVLSNNSLQ 371
+ + +V ++ L + + S F + +++ SL
Sbjct: 209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267
Query: 372 GQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNN 417
Q+ ++ L L N + +P ++LQ +++ N
Sbjct: 268 -QVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 47/301 (15%), Positives = 84/301 (27%), Gaps = 99/301 (32%)
Query: 406 SALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNN 465
A++ L +S+N I+ + L L A+++ +N + +F L LE LDLS N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 466 ISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNG 525
+S +L W L L +L L N
Sbjct: 112 LS-NLS-----------------------------------SSWFKPLSSLTFLNLLGNP 135
Query: 526 LEGEMPLQL-CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLP 584
+ L L KLQ++ + + + +I + L
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQ---------------------RKDFAGLT 174
Query: 585 QLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIH 644
L+ L + + L P + + +
Sbjct: 175 FLEELE---------------------------------IDASDLQSYEPKSLKSIQNVS 201
Query: 645 TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGK 704
L L + VE L+L +L+ + + + N+L K
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT--------FHFSELSTGETNSLIKK 253
Query: 705 T 705
Sbjct: 254 F 254
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 58/291 (19%), Positives = 107/291 (36%), Gaps = 52/291 (17%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
++ S L+ L L+ +E +FS+ + SL++L LS +YL
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGINTIEE------DSFSS--------LGSLEHLDLSYNYL 112
Query: 121 NGTILDQGLCE-LVYLQEVNIDRNNLSGSLPW-CLANLTYLRLLDVSFNQLTENISSSPL 178
+ L + L L +N+ N ++LT L++L V I
Sbjct: 113 --SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 179 MNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISL 238
LT++EEL + + Q S EP SL ++ + L
Sbjct: 171 AGLTFLEELEIDASDLQ---SYEP----------------------KSLKSIQNVSHLIL 205
Query: 239 FGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWL-------LEKNKKLKRLSLVNIS 291
+ F+ +E ++L +L + L L K + + + + S
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265
Query: 292 LFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
LF ++ L L+ S N+L+ +P I + L +L + + TN ++
Sbjct: 266 LF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 9e-19
Identities = 77/443 (17%), Positives = 152/443 (34%), Gaps = 48/443 (10%)
Query: 297 PLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWG 356
P C N L +P E+ ++ ++++ N+ +SF
Sbjct: 3 PGTSECSVIGYNAICINRGLH-QVP----ELPAHVNYVDLSLNSIAELNETSFSRLQ--- 54
Query: 357 CFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIP-KTLSNCSALQGLYIS 414
L++L + + + + F L+ L L LD N + + + L+ L ++
Sbjct: 55 --DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLT 111
Query: 415 DNNI-SGNIP----TRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNNISG 468
N+ + L +L L + +N ++ P S F +R +LDL+ N +
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLV---LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168
Query: 469 SLPSCSSPF-NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLE 527
C N + H + L L D++ L + + L L+ NG +
Sbjct: 169 I---CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Query: 528 GEMPLQLCW-LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQL 586
M + + ++ L +N + D + + L + +
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN-------FKDPDNFTFKGL-EASGV 277
Query: 587 QILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQI-GELSRIHT 645
+ + L + L L+ N+ I +I L+ +
Sbjct: 278 KTCDLSKSKIFALLKSV---------FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLK 327
Query: 646 LNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNALAVFSVAFNNLSGK 704
LNLS N L F ++ ++E LDLSYN++ + + L L ++ N L
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSV 386
Query: 705 TPDRVAQFGTFEEDSYEGNPFLC 727
+ + ++ NP+ C
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPWDC 409
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 2e-16
Identities = 81/436 (18%), Positives = 139/436 (31%), Gaps = 80/436 (18%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ V++ N+++ + L L+ L V I ++ L+ + L L N F
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
+ F + L+ L L F
Sbjct: 92 L-QLETGAFNGLANLEVLTLTQC--------------NLDGAVL----SGNFFKPL---- 128
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVS 312
LE + L N+ + P ++ L L + L K+ +L +S
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188
Query: 313 NNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN---S 369
+ LQ + + + + L LS N
Sbjct: 189 SITLQD---------MNEYWLGWEKCGNP-------------FKNTSITTLDLSGNGFKE 226
Query: 370 LQGQLFSKEFNLTKLKRLNLDGNHFIGD-----IPKTLSNC-------SALQGLYISDNN 417
+ F TK++ L L ++ +G K N S ++ +S +
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286
Query: 418 IS---GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCS 474
I ++ + +L L + N + +AF L HL L+LS+N + S+ S
Sbjct: 287 IFALLKSVFSHFTDLEQLT---LAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRM 342
Query: 475 SPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQL 534
F +L K L+ +L DLSYN + + LP L+ L L N L+
Sbjct: 343 --FE----NLDK--LE--VL-DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391
Query: 535 CWLNKLQLVDLSHNNL 550
L LQ + L N
Sbjct: 392 DRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 6e-16
Identities = 69/407 (16%), Positives = 136/407 (33%), Gaps = 58/407 (14%)
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPW-CLANLTYLRLLDVSF 166
A + Y+ LS + + + + L LQ + +++ + L+ L +L + +
Sbjct: 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 167 NQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSS 226
NQ + + L +E L L+ + ++ FF
Sbjct: 89 NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP-------------------- 127
Query: 227 LTPKFQLTSISLFGHGDSGIFPK-FLYHQHDLEYVDLSHLNLTREFPNWLLE-KNKKLKR 284
LT L + L + I P F + +DL+ + LL + K
Sbjct: 128 LT---SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184
Query: 285 LSLVNISLFGPFPLPI--------HCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNV 336
L L +I+L + + ++ LD+S N + + + + + ++
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244
Query: 337 ATNAFNGSIPSSFGNT---------WPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKR 386
+ S ++ LS + + L F + T L++
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQ 303
Query: 387 LNLDGNHFIGDIPK-TLSNCSALQGLYISDNNIS---GNIPTRLGNLSFLDAIMMPNNRL 442
L L N I I + L L +S N + + L L LD + N +
Sbjct: 304 LTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD---LSYNHI 359
Query: 443 EGPIPSAFCQLRHLEILDLSRNNISGSLPSC--SSPFNIRRVHLSKN 487
+F L +L+ L L N + S+P +++++ L N
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 76/411 (18%), Positives = 137/411 (33%), Gaps = 80/411 (19%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
+ + F L +L L F LE AF+ +A+L+ L+L+ L
Sbjct: 70 IRNNTFRGLSSLIILKLDYNQFLQLET------GAFNG--------LANLEVLTLTQCNL 115
Query: 121 NGTILDQGL-CELVYLQEVNIDRNNLSGSLPWCL-ANLTYLRLLDVSFNQLTENISSSPL 178
+G +L L L+ + + NN+ P N+ +LD++FN++ +I L
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDL 174
Query: 179 MNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISL 238
+N L + + E + K + +T++ L
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT---------------SITTLDL 219
Query: 239 FGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPL 298
G+G K + + T+ L N F
Sbjct: 220 SGNGFKESMAKRFFD----------AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 299 PIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCF 358
++ D+S +K+ + + +L L +A N N ++F WG
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-----WGLT 323
Query: 359 YLEYLVLSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYIS 414
+L L LS N S+ ++F L KL+ L+L NH I + + L+ L +
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFEN---LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALD 379
Query: 415 DNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNN 465
N + ++P F +L L+ + L N
Sbjct: 380 TNQLK-SVP-----------------------DGIFDRLTSLQKIWLHTNP 406
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 77/379 (20%), Positives = 123/379 (32%), Gaps = 108/379 (28%)
Query: 58 EGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSN 117
L+ + F LE+L L N K ++ + F N M L L+
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQ-----PASFFLN--------MRRFHVLDLTF 163
Query: 118 ---------SYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQ 168
LN L L + +++ L T + LD+S N
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223
Query: 169 LTENISS--SPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSS 226
E+++ + T I+ L LSN++ S F H+ K D + +E S
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGS-----SFGHTNFKDPDNFTFKGLEAS--- 275
Query: 227 LTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLS 286
++ DLS ++
Sbjct: 276 -----------------------------GVKTCDLSK------------------SKIF 288
Query: 287 LVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIP 346
+ S+F F +L L ++ N++ I L +L+ LN++ N GSI
Sbjct: 289 ALLKSVFSHFT-------DLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 347 SSFGNTWPWGCFY----LEYLVLSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP 399
S F LE L LS N +L Q F L LK L LD N + +P
Sbjct: 340 S--------RMFENLDKLEVLDLSYNHIRALGDQSFLG---LPNLKELALDTNQ-LKSVP 387
Query: 400 K-TLSNCSALQGLYISDNN 417
++LQ +++ N
Sbjct: 388 DGIFDRLTSLQKIWLHTNP 406
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L S+F+ F LE L L+ ++ N+F ++ L L+LS ++L
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKID----------DNAFWGLT----HLLKLNLSQNFL 335
Query: 121 NGTILDQGLCE-LVYLQEVNIDRNNLSGSLPWCL-ANLTYLRLLDVSFNQLTENISSSPL 178
+D + E L L+ +++ N++ +L L L+ L + NQL ++
Sbjct: 336 --GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIF 391
Query: 179 MNLTYIEELWLSNNHFQ 195
LT ++++WL N +
Sbjct: 392 DRLTSLQKIWLHTNPWD 408
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 3e-18
Identities = 91/465 (19%), Positives = 154/465 (33%), Gaps = 66/465 (14%)
Query: 104 SELMASLKYLSLSN---SYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLR 160
+L K LSLS S L + L L+ + + N + L
Sbjct: 48 KDLPPRTKALSLSQNSISELRMPDISF----LSELRVLRLSHNRIRSLDFHVFLFNQDLE 103
Query: 161 LLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEI 220
LDVS N+L NIS P+ +L + L LS N F + + F
Sbjct: 104 YLDVSHNRLQ-NISCCPMASLRH---LDLSFNDFD-VLPVCKEF---------------- 142
Query: 221 ETSHSSLTPKFQLTSISLFGHG-DSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKN 279
+LT +LT + L + +DL ++ L N
Sbjct: 143 ----GNLT---KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195
Query: 280 KKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQ----GHIPIEIGEVLPNLVVLN 335
+ L SLF L L +SN KL + + E+ +LN
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNA--LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253
Query: 336 VATNAFNGS---IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFN-----LTKLKRL 387
V + F WP +EYL + N ++ ++ +EF L L
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPR---PVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310
Query: 388 NLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP 447
++ F+ S + + +S ++ + S + N +
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370
Query: 448 SAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIP 507
L+ L+ L L RN + + + + D+S N LNS+
Sbjct: 371 QGCSTLKRLQTLILQRNGLK-NFFKVALMTKN---------MSSLETLDVSLNSLNSHAY 420
Query: 508 DWMNRLPQ-LRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551
D + + L L++N L G + L K++++DL +N +
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM 463
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 4e-18
Identities = 93/505 (18%), Positives = 169/505 (33%), Gaps = 79/505 (15%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L + +L +L LS ++L+ F L+YL +S+
Sbjct: 67 LRMPDISFLSELRVLRLSHNRIRSLD------FHVFLF--------NQDLEYLDVSH--- 109
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
N L ++ + LR LD+SFN N
Sbjct: 110 ----------------------NRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGN 144
Query: 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFG 240
LT + L LS F+ + L P + + I+ + T + L
Sbjct: 145 LTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203
Query: 241 HGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWL------LEKNKKLKRLSLVNISLFG 294
H +S + + L ++ LS++ L E L L + L ++L +I
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263
Query: 295 PFPLPIHC---HKNLRVLDVSNNKLQGHIPIEIGE----VLPNLVVLNVATNAFNGSIPS 347
+ + + + L++ N + I E L +L++ +V F S +
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323
Query: 348 SFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407
+ + +LS + + + LN N F + + S
Sbjct: 324 LY-----SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378
Query: 408 LQGLYISDNNIS--GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQL-RHLEILDLSRN 464
LQ L + N + + N+S L+ + + N L C + +L+LS N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 465 NISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN 524
++GS+ C P ++ + L N + +IP + L L+ L +A+N
Sbjct: 439 MLTGSVFRC-LPPKVKVLDLHNNRIM--------------SIPKDVTHLQALQELNVASN 483
Query: 525 GLEGEMPLQLCWLNKLQLVDLSHNN 549
L+ L LQ + L N
Sbjct: 484 QLKSVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 4e-16
Identities = 69/430 (16%), Positives = 135/430 (31%), Gaps = 35/430 (8%)
Query: 60 YLNASLFTSFQQLELLDLS--------ILNFKNLEYFNMDF----CTAFSNSFLQMSELM 107
L+ +F Q LE LD+S +L + ++ F F ++
Sbjct: 90 SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT--- 146
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRL-LDVSF 166
L +L LS + L + +++ ++ G L L L
Sbjct: 147 -KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Query: 167 NQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSS 226
N L + + L +++ + N + ++ IET+
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265
Query: 227 LTPKFQLTSISLFGH--------GDSGIFPKFLYHQHDLEYVDLSHL--NLTREFPNWLL 276
FQ + + +F Y + L+ + + H+ + L
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 277 EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNV 336
++ L + + L+ + N + L L L +
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLIL 384
Query: 337 ATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNL-TKLKRLNLDGNHFI 395
N + T LE L +S NSL + + + LNL N
Sbjct: 385 QRNGLK-NFFKVALMTKNMS--SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
Query: 396 GDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH 455
G + + L ++ L + +N I +IP + +L L + + +N+L+ F +L
Sbjct: 442 GSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498
Query: 456 LEILDLSRNN 465
L+ + L N
Sbjct: 499 LQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 56/342 (16%), Positives = 110/342 (32%), Gaps = 30/342 (8%)
Query: 360 LEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNN 417
+ L LS NS+ +L + L++L+ L L N I + L+ L +S N
Sbjct: 54 TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNISGSLPSCSSP 476
+ + +L LD + N + P+ F L L L LS L
Sbjct: 112 LQNISCCPMASLRHLD---LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVA 167
Query: 477 F--------NIRRVHLSKNMLQGPLLGDLSYNRLNSN--------IPDWMNRLP--QLRY 518
++ H+ + + + + L + + +N L QL
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227
Query: 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQ 578
+ L + + M L++++ ++ + F + L +
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 579 ILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEV---QPLHSMSGLDLSCNKLIGEIPL 635
I ++ + + Y+ + Q + M+ LS + +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347
Query: 636 QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677
S LN + N T S +K++++L L N L
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 5e-12
Identities = 85/424 (20%), Positives = 138/424 (32%), Gaps = 45/424 (10%)
Query: 300 IHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSS-FGNTWPWGCF 358
I LRVL +S+N+++ + + +L L+V+ N +I +
Sbjct: 72 ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNISCCPMAS------- 122
Query: 359 YLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFI-GDIPKTLSNCSALQGLYISDN 416
L +L LS N KEF NLTKL L L F D+ + L +
Sbjct: 123 -LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181
Query: 417 NISGNIPTRL--GNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCS 474
+I G L N + L + PN+ + + L HL++ ++ N+ +
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241
Query: 475 SPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQL 534
R L LQ +L + L + E
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301
Query: 535 CWLNKLQLVDLSHNNLSGQIPHCLY------NISFNYREDNHDLFDQDPQILYQLPQLQI 588
L L + + + LY NI D + P L
Sbjct: 302 TALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN- 359
Query: 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL--IGEIPLQIGELSRIHTL 646
N +T +RL T L L N L ++ L +S + TL
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQT-----------LILQRNGLKNFFKVALMTKNMSSLETL 408
Query: 647 NLSHNNLT-GESPVTFSHMKQVESLDLSYNNLNG----KIPPRLIEL----NALAVFSVA 697
++S N+L T + + + L+LS N L G +PP++ L N +
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD 468
Query: 698 FNNL 701
+L
Sbjct: 469 VTHL 472
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 27/128 (21%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 68 SFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQ 127
+ + L N +LE ++ + S+++ + S+ L+LS++ L G++
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR- 446
Query: 128 GLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187
C ++ +++ N + S+P + +L L+ L+V+ NQL ++ LT ++ +
Sbjct: 447 --CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502
Query: 188 WLSNNHFQ 195
WL +N +
Sbjct: 503 WLHDNPWD 510
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 53/365 (14%), Positives = 104/365 (28%), Gaps = 66/365 (18%)
Query: 37 NTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAF 96
N+ +++ ++ L LN N+ +++
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265
Query: 97 SNSFLQMSELMASLKYLSLSNSYLNG----TILDQGLCELVYLQEVNIDRNNLSGSLPWC 152
S Q ++YL++ N + L L ++ S
Sbjct: 266 SVKLFQFFWPR-PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324
Query: 153 LANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFF 212
+ + + +S + I + + L + N F + +L+
Sbjct: 325 YSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTL 382
Query: 213 DGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFP 272
+ L + + LE +D+S +L
Sbjct: 383 ILQ--------------RNGLKNFF-------KVALMTKNMSS-LETLDVSLNSLNSHAY 420
Query: 273 NWLLEKNKKLKRLSLVNISL-FGPFP-LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPN 330
+ + + L+L + L F LP ++VLD+ NN++ IP ++ L
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP----PKVKVLDLHNNRIM-SIPKDV-THLQA 474
Query: 331 LVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLD 390
L LNVA+N S+P F LT L+ + L
Sbjct: 475 LQELNVASNQLK-SVPDGV-------------------------FD---RLTSLQYIWLH 505
Query: 391 GNHFI 395
N +
Sbjct: 506 DNPWD 510
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 76/479 (15%), Positives = 144/479 (30%), Gaps = 67/479 (13%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ + L L LD + +T + + LT + +L ++N
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN-- 74
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLT--PKFQLTSISLFGHGDSGIFPKFLY 252
+I+ ++ L + + LT LT ++ + + +
Sbjct: 75 --NITTLDLSQNTNLTYLA--------CDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVS 124
Query: 253 HQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVS 312
L Y++ + LT + N +L L L + L LD S
Sbjct: 125 QNPLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCS 178
Query: 313 NNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQG 372
NK+ +++ + L LN TN + + L +L S+N L
Sbjct: 179 FNKITE---LDVSQ-NKLLNRLNCDTNNIT-KLDLN-------QNIQLTFLDCSSNKLTE 226
Query: 373 QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFL 432
+ LT+L + N + ++ +S S L L+ ++ T L +
Sbjct: 227 IDVT---PLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280
Query: 433 DAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGP 492
A + L +LD I+ L S + ++L+ L
Sbjct: 281 QAEGCRKIK-----ELDVTHNTQLYLLDCQAAGIT-ELD-LSQNPKLVYLYLNNTEL--- 330
Query: 493 LLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSG 552
+ + ++ +L+ L N ++ + + L +
Sbjct: 331 -----------TELD--VSHNTKLKSLSCVNAHIQDFSSVGK--IPALNNNFEAEGQTIT 375
Query: 553 QIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTY 611
L N S DL DQ + P +Y N N +T TY
Sbjct: 376 MPKETLTNNSLTIAVSP-DLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTY 433
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 79/450 (17%), Positives = 137/450 (30%), Gaps = 55/450 (12%)
Query: 278 KNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVA 337
+ + + L LD N+ + IE L L L
Sbjct: 16 PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLICT 72
Query: 338 TNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGD 397
+N ++ S L YL +N L + LTKL LN D N +
Sbjct: 73 SNNIT-TLDLS-------QNTNLTYLACDSNKLTNLDVT---PLTKLTYLNCDTNK-LTK 120
Query: 398 IPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457
+ +S L L + N ++ + L+ LD N+ + L
Sbjct: 121 LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCH---LNKKITKLD--VTPQTQLT 173
Query: 458 ILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLG--------DLSYNRLNSNIPDW 509
LD S N I+ L + + R++ N + L D S N+L + I
Sbjct: 174 TLDCSFNKIT-ELDVSQNK-LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKL-TEID-- 228
Query: 510 MNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDN 569
+ L QL Y + N L L + L+KL + +L + + E
Sbjct: 229 VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285
Query: 570 HDLFDQDPQILYQLPQLQILY--TNYHNHKYLTNFTTKQRLYTYE-------VQPLHSMS 620
+ + D + QL +L L+ LY V +
Sbjct: 286 RKIKELD---VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLK 342
Query: 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG- 679
L I + +G++ ++ + T ++ ++ + G
Sbjct: 343 SLSCVNAH-IQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGN 400
Query: 680 --KIPPRLIELNALAVFSVAFNNLSGKTPD 707
I P + A ++ + NLS P
Sbjct: 401 PMNIEPGDGGVYDQATNTITWENLSTDNPA 430
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 63/411 (15%), Positives = 120/411 (29%), Gaps = 76/411 (18%)
Query: 66 FTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSEL----MASLKYLSLSNSYLN 121
L L + N L+ T + +++ L + L YL+ + L
Sbjct: 60 IEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL- 118
Query: 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNL 181
T LD + + L +N RN L+ + +++ T L LD N+ I+ +
Sbjct: 119 -TKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLDVTPQ 169
Query: 182 TYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGH 241
T + L S N I+ + L + D +T + L +
Sbjct: 170 TQLTTLDCSFNK----ITELDVSQNKLLNRLNCD--------------TNNITKLDLNQN 211
Query: 242 GDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIH 301
L ++D S LT E + +L L L +
Sbjct: 212 -------------IQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPL---TELDVS 251
Query: 302 CHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLE 361
L L L I + L+ + + L
Sbjct: 252 TLSKLTTLHCIQTDLL-EIDLTH---NTQLIYFQAEGCRKIKELDVT-------HNTQLY 300
Query: 362 YLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN 421
L + S KL L L+ + ++ +S+ + L+ L + +I +
Sbjct: 301 LLDCQAAGITELDLS---QNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQ-D 353
Query: 422 IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLR-----HLEILDLSRNNIS 467
+ +G + L+ + ++LD N ++
Sbjct: 354 FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 1e-17
Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 51/251 (20%)
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV 364
N R+L++ N++Q I + + L +L +L ++ N +F G L L
Sbjct: 65 NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAF-----NGLANLNTLE 118
Query: 365 LSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNNISG 420
L +N ++ F L+KLK L L N I IP + +L+ L + +
Sbjct: 119 LFDNRLTTIPNGAFV---YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELK--- 171
Query: 421 NIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIR 480
RL +S AF L +L L+L+ N+ +P+ + +
Sbjct: 172 ----RLSYIS----------------EGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLD 210
Query: 481 RVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540
+ DLS N L++ P L L+ L + + ++ L L
Sbjct: 211 EL-------------DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
Query: 541 QLVDLSHNNLS 551
++L+HNNL+
Sbjct: 258 VEINLAHNNLT 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 8e-16
Identities = 51/307 (16%), Positives = 94/307 (30%), Gaps = 74/307 (24%)
Query: 397 DIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHL 456
++P +S + + L + +N I +L L+ + + N + AF L +L
Sbjct: 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 457 EILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQL 516
L+L N ++ + L +L
Sbjct: 115 NTLELFDNRLT---------------TIPNGAFVY---------------------LSKL 138
Query: 517 RYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQD 576
+ L L NN +E + L+ +DL I
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS--------------------- 177
Query: 577 PQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQ 636
L L+ L N + + N PL + LDLS N + I
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNL-----------TPLIKLDELDLSGNH-LSAIRPG 225
Query: 637 I-GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNALAVF 694
L + L + + + F +++ + ++L++NNL +P L L+ L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERI 284
Query: 695 SVAFNNL 701
+ N
Sbjct: 285 HLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 56/264 (21%), Positives = 91/264 (34%), Gaps = 46/264 (17%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ +N+ N + +L +L +L +S N + I L + L L +N
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRL 124
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
+I F SKLK E+ ++ + SI S F +
Sbjct: 125 T-TIPNGAFVYLSKLK--------ELWLRNN------PIESIP------SYAF-NRIPS- 161
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLV--NISLFGPF-PLPIHCHKNLRVLDV 311
L +DL L E L+ L+L N+ PL L LD+
Sbjct: 162 --LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLI-----KLDELDL 214
Query: 312 SNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN--- 368
S N L I + L +L L + + ++F L + L++N
Sbjct: 215 SGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-----DNLQSLVEINLAHNNLT 268
Query: 369 SLQGQLFSKEFNLTKLKRLNLDGN 392
L LF+ L L+R++L N
Sbjct: 269 LLPHDLFT---PLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 70/283 (24%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
+ + F + LE+L LS + + +E AF+ +A+L L L ++ L
Sbjct: 79 IKVNSFKHLRHLEILQLSRNHIRTIEI------GAFNG--------LANLNTLELFDNRL 124
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVS-FNQLTENISSSPLM 179
TI + L L+E+ + N + + + LR LD+ +L+ IS
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFE 182
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239
L+ + L L+ L I
Sbjct: 183 GLSNLRYLNLAMC---------------------------------------NLREIPNL 203
Query: 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLP 299
L+ +DLS +L+ + L++L ++ +
Sbjct: 204 TPLIK------------LDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNA 250
Query: 300 IHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
++L +++++N L +P ++ L +L +++ N +N
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 18/151 (11%)
Query: 60 YLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSY 119
+ F +L+ L L +++ + AF+ + SL+ L L
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSY------AFNR--------IPSLRRLDLGELK 171
Query: 120 LNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLM 179
I + L L+ +N+ NL +P L L L LD+S N L+ I
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQ 228
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLK 210
L ++++LW+ + Q I F N L
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV 258
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 35/209 (16%), Positives = 57/209 (27%), Gaps = 61/209 (29%)
Query: 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555
L +PD ++ R L L N ++ L L+++ LS N++ I
Sbjct: 49 ICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIE 104
Query: 556 HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP 615
L L L
Sbjct: 105 ---------------------IGAFNGLANLNTLE------------------------- 118
Query: 616 LHSMSGLDLSCNKLIGEIPLQI-GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674
L N+ + IP LS++ L L +N + F+ + + LDL
Sbjct: 119 --------LFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 675 NNLNGKIPPR-LIELNALAVFSVAFNNLS 702
I L+ L ++A NL
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 2e-16
Identities = 42/254 (16%), Positives = 92/254 (36%), Gaps = 22/254 (8%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L S+ + L + ++ + + I + + + + L+++ N ++
Sbjct: 23 TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKLT 78
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
+I L NL L + + N+++ S+ L+ L+ L L N IS + +
Sbjct: 79 -DI-KPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQL 133
Query: 480 RRVHLSKNMLQG--PLLG-------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530
++L N + L L N++ S+I L +L+ L L+ N +
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQI-SDIVPLAG-LTKLQNLYLSKNHISDLR 191
Query: 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILY 590
L L L +++L + + N+ N D P+I+ +
Sbjct: 192 ALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249
Query: 591 TNYHNHKYLTNFTT 604
+H ++ +
Sbjct: 250 VKWHLPEFTNEVSF 263
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 1e-13
Identities = 49/335 (14%), Positives = 91/335 (27%), Gaps = 81/335 (24%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ E + P ++ +T+ L I+++ +N+
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNS-- 53
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
+ S+ + +
Sbjct: 54 -------------------------------------DIKSVQ------------GIQYL 64
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVS 312
++ + L+ LT P L K L L L I + K L+ L +
Sbjct: 65 PNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSS----LKDLKKLKSLSLE 117
Query: 313 NNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQG 372
+N + I LP L L + N + + L+ L L +N +
Sbjct: 118 HNGISD---INGLVHLPQLESLYLGNN--KITDITVLSR-----LTKLDTLSLEDNQISD 167
Query: 373 QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFL 432
LTKL+ L L NH I D+ + L+ L L + NL
Sbjct: 168 --IVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223
Query: 433 DAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
+ + + L P + E ++ +
Sbjct: 224 NTVKNTDGSLVTPEIISDDG--DYEKPNVKWHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 7e-12
Identities = 49/316 (15%), Positives = 102/316 (32%), Gaps = 78/316 (24%)
Query: 105 ELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDV 164
+ A +L + + EL + ++ + +++ S+ + L + L +
Sbjct: 18 DAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFL 72
Query: 165 SFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSH 224
+ N+LT PL NL + L+L N +I L + KLK +
Sbjct: 73 NGNKLT---DIKPLTNLKNLGWLFLDEN--KIK-DLSSLKDLKKLKSLSLE--------- 117
Query: 225 SSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKR 284
++ I+ L H LE + L + +T
Sbjct: 118 -----HNGISDIN------------GLVHLPQLESLYLGNNKIT---------------- 144
Query: 285 LSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGS 344
+I+ + L L + +N++ I L L L ++ N +
Sbjct: 145 ----DIT-------VLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHIS-D 189
Query: 345 IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRL-NLDGNHFIGDIPKTLS 403
+ + G L+ L L + + + + NL + N DG+ P+ +S
Sbjct: 190 LRALAGLK------NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV---TPEIIS 240
Query: 404 NCSALQGLYISDNNIS 419
+ + + +
Sbjct: 241 DDGDYEKPNVKWHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 64.4 bits (156), Expect = 9e-11
Identities = 44/332 (13%), Positives = 108/332 (32%), Gaps = 109/332 (32%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
+ + + ++ Q+F + + + NL + D T + +++ + ++++I
Sbjct: 1 MGETITVSTPIK-QIFPDD-AFAETIKDNLKKKS-VTDAV-TQNELNSIDQIIANNSDIK 56
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
++ + L ++ L L+ N ++ + ++ N+
Sbjct: 57 --------SVQGIQ------------------YLPNVTKLFLNGNKLT-DIKPLTNLKNL 89
Query: 480 RRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
+ L +N + ++ + L +L+ L L +NG+ L L +
Sbjct: 90 GWLFLDENKI--------------KDLSS-LKDLKKLKSLSLEHNGISDINGLVH--LPQ 132
Query: 540 LQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYL 599
L+ + L +N ++ D +L +L +L L
Sbjct: 133 LESLYLGNNKIT------------------------DITVLSRLTKLDTL---------- 158
Query: 600 TNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPV 659
L N++ +PL L+++ L LS N+++
Sbjct: 159 -----------------------SLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRA- 192
Query: 660 TFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691
+ +K ++ L+L K L
Sbjct: 193 -LAGLKNLDVLELFSQECLNKPINHQSNLVVP 223
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 2e-10
Identities = 48/247 (19%), Positives = 83/247 (33%), Gaps = 31/247 (12%)
Query: 66 FTSFQQLELLDLS---------ILNFKNLEYFNMDFCTAFSNSFLQMSEL--MASLKYLS 114
+ L L+ + N KNL + +D N +S L + LK LS
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD-----ENKIKDLSSLKDLKKLKSLS 115
Query: 115 LSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENIS 174
L ++ ++ I GL L L+ + + N ++ L+ LT L L + NQ++
Sbjct: 116 LEHNGIS-DI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---D 167
Query: 175 SSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLT 234
PL LT ++ L+LS N IS L L + + + +
Sbjct: 168 IVPLAGLTKLQNLYLSKN--HIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224
Query: 235 SISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFG 294
++ G D +Y + EF N + + + G
Sbjct: 225 TVKNT----DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280
Query: 295 PFPLPIH 301
P+
Sbjct: 281 RVTQPLK 287
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 55/321 (17%), Positives = 98/321 (30%), Gaps = 75/321 (23%)
Query: 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRL 442
+ ++ ++P+ + S + L + +NNI +L L+ + + N +
Sbjct: 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 443 EGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRL 502
AF L L L+L N ++ + +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLT---------------VIPSGAFEY----------- 145
Query: 503 NSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562
L +LR L L NN +E + L +DL I
Sbjct: 146 ----------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS------- 188
Query: 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622
L L+ L N K + N PL + L
Sbjct: 189 --------------EGAFEGLFNLKYLNLGMCNIKDMPNL-----------TPLVGLEEL 223
Query: 623 DLSCNKLIGEIPLQ-IGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681
++S N EI LS + L + ++ ++ F + + L+L++NNL+ +
Sbjct: 224 EMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281
Query: 682 PPRLIE-LNALAVFSVAFNNL 701
P L L L + N
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 54/242 (22%), Positives = 89/242 (36%), Gaps = 26/242 (10%)
Query: 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL---- 287
++L + I H H LE + L N R+ L L L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 288 ---VNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGS 344
+ F LR L + NN ++ IP +P+L+ L++
Sbjct: 135 LTVIPSGAFEYLS-------KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 345 IPS-SFGNTWPWGCFYLEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTL 402
I +F G F L+YL L +++ + L L+ L + GNHF P +
Sbjct: 187 ISEGAFE-----GLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGSF 238
Query: 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462
S+L+ L++ ++ +S L+ L + + +N L F LR+L L L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298
Query: 463 RN 464
N
Sbjct: 299 HN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 56/266 (21%), Positives = 89/266 (33%), Gaps = 50/266 (18%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ +N+ NN+ +L +L +L + N + + I L + L L +N
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWL 135
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
I F SKL+ E+ ++ + SI S F +
Sbjct: 136 T-VIPSGAFEYLSKLR--------ELWLRNN------PIESIP------SYAF-NRVPS- 172
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL-----VNISLFGPFPLPIHCHKNLRVL 309
L +DL L E LK L+L ++ P L L
Sbjct: 173 --LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLV-------GLEEL 223
Query: 310 DVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN- 368
++S N I L +L L V + + ++F G L L L++N
Sbjct: 224 EMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-----DGLASLVELNLAHNN 277
Query: 369 --SLQGQLFSKEFNLTKLKRLNLDGN 392
SL LF+ L L L+L N
Sbjct: 278 LSSLPHDLFT---PLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 49/284 (17%), Positives = 92/284 (32%), Gaps = 72/284 (25%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
+ A F LE+L L + + +E AF+ +ASL L L +++L
Sbjct: 90 IQADTFRHLHHLEVLQLGRNSIRQIEV------GAFNG--------LASLNTLELFDNWL 135
Query: 121 NGTILDQG-LCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVS-FNQLTENISSSPL 178
T++ G L L+E+ + N + + + L LD+ +L IS
Sbjct: 136 --TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-ISEGAF 192
Query: 179 MNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISL 238
L ++ L L + +
Sbjct: 193 EGLFNLKYLNLGMC---------------------------------------NIKDMPN 213
Query: 239 FGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPL 298
LE +++S + E LK+L ++N +
Sbjct: 214 LTPLVG------------LEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Query: 299 PIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
+L L++++N L +P ++ L LV L++ N +N
Sbjct: 261 AFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 33/209 (15%), Positives = 56/209 (26%), Gaps = 61/209 (29%)
Query: 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555
+ L+ +P + RYL L N ++ L+ L+++ L N++ QI
Sbjct: 60 VCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIE 115
Query: 556 HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP 615
L L L
Sbjct: 116 ---------------------VGAFNGLASLNTLE------------------------- 129
Query: 616 LHSMSGLDLSCNKLIGEIPLQI-GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674
L N + IP LS++ L L +N + F+ + + LDL
Sbjct: 130 --------LFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 675 NNLNGKIPPR-LIELNALAVFSVAFNNLS 702
I L L ++ N+
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 49/241 (20%), Positives = 87/241 (36%), Gaps = 44/241 (18%)
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLS 498
+N+L+ F +L L L LS N +S C S + L L DLS
Sbjct: 37 SNKLQSLPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKY-------L-DLS 86
Query: 499 YNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW-LNKLQLVDLSHNNLSGQIPHC 557
+N + + L QL +L ++ L+ + L L +D+SH +
Sbjct: 87 FNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAF-- 142
Query: 558 LYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLH 617
I L L++L + + ++ L
Sbjct: 143 -------------------NGIFNGLSSLEVLK--------MAGNSFQENFLPDIFTELR 175
Query: 618 SMSGLDLSCNKLIGEIPLQI-GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676
+++ LDLS + + ++ LS + LN+SHNN + + ++ LD S N+
Sbjct: 176 NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
Query: 677 L 677
+
Sbjct: 235 I 235
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 6e-14
Identities = 60/307 (19%), Positives = 105/307 (34%), Gaps = 71/307 (23%)
Query: 136 QEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQ 195
E+ + L+ S+P + + L++ N+L ++ LT + +L LS+N
Sbjct: 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 196 -ISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
+ F + LK+ D +++ F
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLS-----FNGVITMSSNFL--------------------GL 100
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
LE++D H NL + S+F NL LD+S+
Sbjct: 101 EQLEHLDFQHSNLK-----------------QMSEFSVFLSLR-------NLIYLDISHT 136
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN---SLQ 371
+ I L +L VL +A N+F + L +L LS L
Sbjct: 137 HTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLS 191
Query: 372 GQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTR-----L 426
F+ +L+ L+ LN+ N+F ++LQ L S N+I +
Sbjct: 192 PTAFN---SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFP 247
Query: 427 GNLSFLD 433
+L+FL+
Sbjct: 248 SSLAFLN 254
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 56/266 (21%), Positives = 91/266 (34%), Gaps = 41/266 (15%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTE-NISSSPLMNLTYIEELWLSNNH 193
+ ++ N L LT L L +S N L+ S T ++ L LS N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN- 88
Query: 194 FQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYH 253
+ F +L+ ++ HS L +S + +F
Sbjct: 89 -GVITMSSNFLGLEQLE--------HLDFQHS------NLKQMS-----EFSVF----LS 124
Query: 254 QHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFP--LPIHCHKNLRVLDV 311
+L Y+D+SH + N + L+ L + S F + NL LD+
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDL 182
Query: 312 SNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNN--- 368
S +L+ + L +L VLN++ N F + L+ L S N
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-----KCLNSLQVLDYSLNHIM 236
Query: 369 SLQGQLFSKEFNLTKLKRLNLDGNHF 394
+ + Q + L LNL N F
Sbjct: 237 TSKKQELQH--FPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 46/243 (18%)
Query: 61 LNASLFTSFQQLELLDLS-------------ILNFKNLEYFNMDFC--TAFSNSFLQMSE 105
L +F QL L LS +L+Y ++ F S++FL +
Sbjct: 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE- 101
Query: 106 LMASLKYLSLSNSYLNGTILDQGL-CELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDV 164
L++L +S L + + + L L ++I + + L+ L +L +
Sbjct: 102 ---QLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157
Query: 165 SFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSH 224
+ N EN L + L LS + +S F + S L+ + SH
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ--------VLNMSH 208
Query: 225 SSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKR 284
+ S+ + L+ +D S ++ L L
Sbjct: 209 N------NFFSLD----------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252
Query: 285 LSL 287
L+L
Sbjct: 253 LNL 255
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 50/212 (23%), Positives = 79/212 (37%), Gaps = 30/212 (14%)
Query: 360 LEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIP-KTLSNCSALQGLYISDN- 416
+ L LS N L+ L S F + +L+ L+L I I + S L L ++ N
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87
Query: 417 --NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS-- 472
+++ + L +L L L L+ L+ L+++ N I S
Sbjct: 88 IQSLALGAFSGLSSLQKLV---AVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPE 143
Query: 473 -CSSPFNIRRVHLSKNMLQ---------------GPLLGDLSYNRLNSNIPDWMNRLPQL 516
S+ N+ + LS N +Q L DLS N +N I + +L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRL 202
Query: 517 RYLILANNGLEGEMPLQLCWLNKLQLVDLSHN 548
+ L L N L+ L LQ + L N
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 25/195 (12%)
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV 364
L+VLD+S ++Q I + L +L L + N S+ G L+ LV
Sbjct: 53 ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLAL----GAFSGLSSLQKLV 106
Query: 365 LSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP--KTLSNCSALQGLYISDNNIS 419
SL+ +L LK LN+ N I + SN + L+ L +S N I
Sbjct: 107 AVETNLASLENFPIG---HLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 420 GNIP----TRLGNLSFLDA-IMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS-- 472
+I L + L+ + + N + P AF ++ L+ L L N + S+P
Sbjct: 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLK-SVPDGI 219
Query: 473 CSSPFNIRRVHLSKN 487
+++++ L N
Sbjct: 220 FDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 54/299 (18%), Positives = 85/299 (28%), Gaps = 97/299 (32%)
Query: 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP----TRLGNLSFLDAIMM 437
K L+L N + + LQ L +S I I L +LS L +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI---L 83
Query: 438 PNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDL 497
N ++ AF L L+ L N++ SL + P
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLEN--FPIGH------------------ 122
Query: 498 SYNRLNSNIPDWMNRLPQLRYLILANNGL-EGEMPLQLCWLNKLQLVDLSHNNLSGQIPH 556
L L+ L +A+N + ++P L L+ +DLS N + I
Sbjct: 123 ---------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166
Query: 557 CLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPL 616
L Q+ +L +
Sbjct: 167 --------------TDLRV-------LHQMPLLNLS------------------------ 181
Query: 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYN 675
LDLS N + I + R+ L L N L F + ++ + L N
Sbjct: 182 -----LDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 49/264 (18%), Positives = 95/264 (35%), Gaps = 65/264 (24%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+ +++ N L + + L++LD+S ++ I +L+++ L L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
Q S++L F S L+ + L S+ +
Sbjct: 89 Q-SLALGAFSGLSSLQKLVAV--------------ETNLASLE------NFPIGHL---- 123
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
L+ ++++H + + + L+ NL LD+S+N
Sbjct: 124 KTLKELNVAHNLIQS------FKLPEYFSNLT------------------NLEHLDLSSN 159
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFY---LEYLVLSNN--- 368
K+Q I VL + +LN++ + + N G F L+ L L N
Sbjct: 160 KIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM-----NFIQPGAFKEIRLKELALDTNQLK 213
Query: 369 SLQGQLFSKEFNLTKLKRLNLDGN 392
S+ +F LT L+++ L N
Sbjct: 214 SVPDGIFD---RLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 51/262 (19%), Positives = 88/262 (33%), Gaps = 57/262 (21%)
Query: 157 TYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDI 216
+ LD+SFN L ++ S + ++ L LS
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC------------------------ 62
Query: 217 YAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLL 276
++ +I + G + L + L+ N +
Sbjct: 63 ---------------EIQTI------EDGAY----QSLSHLSTLILTG-NPIQSLALGAF 96
Query: 277 EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNV 336
L++L V +L PI K L+ L+V++N +Q E L NL L++
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 337 ATNAFNGSIPS-SFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFI 395
++N SI L L LS N + + F +LK L LD N +
Sbjct: 157 SSNKIQ-SIYCTDLRVLHQMPLLNLS-LDLSLNPMN-FIQPGAFKEIRLKELALDTNQ-L 212
Query: 396 GDIPK-TLSNCSALQGLYISDN 416
+P ++LQ +++ N
Sbjct: 213 KSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 25/210 (11%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSN--- 117
L + F SF +L++LDLS + +E A+ + ++ L L L+
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIED------GAYQS--------LSHLSTLILTGNPI 88
Query: 118 SYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSP 177
L L LQ++ NL+ + + +L L+ L+V+ N +
Sbjct: 89 QSLALGAFSG----LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 178 LMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYA---EIETSHSSLTPKFQLT 234
NLT +E L LS+N Q SI ++ + + + + +L
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203
Query: 235 SISLFGHGDSGIFPKFLYHQHDLEYVDLSH 264
++L + + L+ + L
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 42/251 (16%), Positives = 91/251 (36%), Gaps = 22/251 (8%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L S+ + L + ++ + + I + + + + L+++ N ++
Sbjct: 26 TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKLT 81
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
+I L NL L + + N+++ S+ L+ L+ L L N IS + +
Sbjct: 82 -DI-KPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQL 136
Query: 480 RRVHLSKNMLQG--PLLG-------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530
++L N + L L N++ S+I L +L+ L L+ N +
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQI-SDIVPLAG-LTKLQNLYLSKNHISDLR 194
Query: 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILY 590
L L L +++L + + N+ N D P+I+ +
Sbjct: 195 ALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252
Query: 591 TNYHNHKYLTN 601
+H ++
Sbjct: 253 VKWHLPEFTNE 263
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 9e-10
Identities = 50/310 (16%), Positives = 107/310 (34%), Gaps = 79/310 (25%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
+ + NL + D T + +++ + ++++I ++ +
Sbjct: 22 AFAETIKDNLKKKS-VTDAV-TQNELNSIDQIIANNSDIK--------SVQGIQ------ 65
Query: 440 NRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ--GPLLG-- 495
L ++ L L+ N ++ + ++ N+ + L +N ++ L
Sbjct: 66 ------------YLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLSSLKDLK 112
Query: 496 -----DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550
L +N + S+I + LPQL L L NN + L L KL + L N +
Sbjct: 113 KLKSLSLEHNGI-SDING-LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI 168
Query: 551 SGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYT 610
S +I L L +LQ LY + NH +++
Sbjct: 169 S--------DIVP----------------LAGLTKLQNLYLS-KNH--ISDLR------- 194
Query: 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESL 670
+ L ++ L+L + + + L +T+ + +L +P S E
Sbjct: 195 -ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKP 251
Query: 671 DLSYNNLNGK 680
++ ++
Sbjct: 252 NVKWHLPEFT 261
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 45/317 (14%), Positives = 99/317 (31%), Gaps = 76/317 (23%)
Query: 105 ELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDV 164
+ A +L + + EL + ++ + +++ S+ + L + L +
Sbjct: 21 DAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFL 75
Query: 165 SFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSH 224
+ N+LT PL NL + L+L N ++ L + KLK +
Sbjct: 76 NGNKLT---DIKPLANLKNLGWLFLDEN--KVK-DLSSLKDLKKLKSLSLE--------- 120
Query: 225 SSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKR 284
++ I+ L H LE + L + +T
Sbjct: 121 -----HNGISDIN------------GLVHLPQLESLYLGNNKIT---------------- 147
Query: 285 LSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGS 344
+I+ + L L + +N++ I L L L ++ N +
Sbjct: 148 ----DIT-------VLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHIS-D 192
Query: 345 IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSN 404
+ + G L+ L L + + + + NL + + P+ +S+
Sbjct: 193 LRALAGLK------NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISD 244
Query: 405 CSALQGLYISDNNISGN 421
+ + +
Sbjct: 245 DGDYEKPNVKWHLPEFT 261
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 44/295 (14%), Positives = 81/295 (27%), Gaps = 77/295 (26%)
Query: 153 LANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFF 212
++ +T+ L I+++ +N+
Sbjct: 20 DDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNS-------------------- 56
Query: 213 DGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFP 272
+ S+ + + ++ + L+ LT P
Sbjct: 57 -------------------DIKSVQ------------GIQYLPNVTKLFLNGNKLTDIKP 85
Query: 273 NWLLEKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPN 330
L K L L L + K L+ L + +N + + LP
Sbjct: 86 ---LANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDINGLV---HLPQ 135
Query: 331 LVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLD 390
L L + N + + L+ L L +N + LTKL+ L L
Sbjct: 136 LESLYLGNN--KITDITVLSR-----LTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 186
Query: 391 GNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGP 445
NH I D+ + L+ L L + NL + + + L P
Sbjct: 187 KNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 48/300 (16%), Positives = 100/300 (33%), Gaps = 36/300 (12%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
N + + + + L + L+ +I L L
Sbjct: 19 ANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TI-EGVQY-----LNNLIGL 68
Query: 364 VLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP 423
L +N + + NLTK+ L L GN + ++ ++ +++ L ++ I+ P
Sbjct: 69 ELKDNQITD--LAPLKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTSTQITDVTP 124
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVH 483
L LS L + + N++ S L +L+ L + +S L ++ + +
Sbjct: 125 --LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLK 179
Query: 484 LSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLV 543
N + S+I + LP L + L NN + PL + L +V
Sbjct: 180 ADDNKI--------------SDISPLAS-LPNLIEVHLKNNQISDVSPLA--NTSNLFIV 222
Query: 544 DLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFT 603
L++ ++ Q N+ P + ++ ++ N +
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 41/307 (13%), Positives = 106/307 (34%), Gaps = 64/307 (20%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
L ++ ++ + D T ++ + L ++ I + L+ L + + +
Sbjct: 17 ALANAIKIAAGKSN-VTDTV-TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72
Query: 440 NRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSY 499
N++ + L + L+LS N + ++ + + +I+ + L+ +
Sbjct: 73 NQITDL--APLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQI---------- 119
Query: 500 NRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLY 559
+++ + L L+ L L N + PL L LQ + + + +S
Sbjct: 120 ----TDVTP-LAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVS-------- 164
Query: 560 NISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSM 619
+++ L L +L L + + ++ + L ++
Sbjct: 165 DLTP----------------LANLSKLTTLKADDNKISDISPLAS-----------LPNL 197
Query: 620 SGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679
+ L N++ PL S + + L++ +T + +++ ++
Sbjct: 198 IEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTITNQPVFYNNNLV---VPNVVKGPSGA 252
Query: 680 KIPPRLI 686
I P I
Sbjct: 253 PIAPATI 259
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 6e-12
Identities = 53/319 (16%), Positives = 115/319 (36%), Gaps = 54/319 (16%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
+ +++ + +L + L+ G + I + + L GL + DN I+
Sbjct: 21 AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQIT 76
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
++ L NL+ + + + N L+ SA L+ ++ LDL+ I+ + + N+
Sbjct: 77 -DLAP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQIT-DVTPLAGLSNL 131
Query: 480 RRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
+ ++L N + +NI + L L+YL + N + PL L+K
Sbjct: 132 QVLYLDLNQI--------------TNISP-LAGLTNLQYLSIGNAQVSDLTPLA--NLSK 174
Query: 540 LQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYL 599
L + N +S D L LP L ++ + +
Sbjct: 175 LTTLKADDNKIS------------------------DISPLASLPNLIEVHLKNNQISDV 210
Query: 600 TNFTTKQRLYTYEV--QPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGES 657
+ L+ + Q + + N L+ ++ + I +S N
Sbjct: 211 SPLANTSNLFIVTLTNQTITNQPVFYN--NNLVVPNVVKGPSGAPIAPATISDNGTYASP 268
Query: 658 PVTFSHMKQVESLDLSYNN 676
+T++ + ++ ++N
Sbjct: 269 NLTWNLTSFINNVSYTFNQ 287
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 51/319 (15%), Positives = 102/319 (31%), Gaps = 75/319 (23%)
Query: 128 GLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187
L ++ ++N++ ++ A+L + L +T + + L + L
Sbjct: 14 PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGL 68
Query: 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIF 247
L +N Q+T ++
Sbjct: 69 ELKDN---------------------------------------QITDLA---------- 79
Query: 248 PKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLR 307
L + + ++LS L + + +K L L + + PL NL+
Sbjct: 80 --PLKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDLTSTQITDVTPLA--GLSNLQ 132
Query: 308 VLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSN 367
VL + N++ P+ L NL L++ + P + L L +
Sbjct: 133 VLYLDLNQITNISPLA---GLTNLQYLSIGNAQVSDLTPLA-------NLSKLTTLKADD 182
Query: 368 NSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLG 427
N + S +L L ++L N I D+ L+N S L + +++ I+
Sbjct: 183 NKISD--ISPLASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQTITNQPVFYNN 238
Query: 428 NLSFLDAIMMPNNRLEGPI 446
NL + + P+ P
Sbjct: 239 NLVVPNVVKGPSGAPIAPA 257
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 53/325 (16%), Positives = 109/325 (33%), Gaps = 53/325 (16%)
Query: 176 SPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTS 235
P L ++ + ++ + + +T+
Sbjct: 13 FPDPALANAIKIAAGKS--NVT-DTVTQADLDGITTLSAF--------------GTGVTT 55
Query: 236 ISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGP 295
I + + ++L ++L +T P L+ K+ L L L
Sbjct: 56 IE------------GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV 100
Query: 296 FPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPW 355
+ ++++ LD+++ ++ P+ L NL VL + N P +
Sbjct: 101 SAIA--GLQSIKTLDLTSTQITDVTPLAG---LSNLQVLYLDLNQITNISPLA------- 148
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD 415
G L+YL + N + + NL+KL L D N I DI L++ L +++ +
Sbjct: 149 GLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKN 204
Query: 416 NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSS 475
N IS P L N S L + + N + +L + ++ + + +
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYN---NNLVVPNVVKGPSGAPIAPATI 259
Query: 476 PFNIRRVHLSKNMLQGPLLGDLSYN 500
N + + ++SY
Sbjct: 260 SDNGTYASPNLTWNLTSFINNVSYT 284
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 61/354 (17%), Positives = 112/354 (31%), Gaps = 90/354 (25%)
Query: 81 NFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNI 140
N + + LS + + +G+ L L + +
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTTI---EGVQYLNNLIGLEL 70
Query: 141 DRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISL 200
N ++ P L NLT + L++S N L + S + L I+ L L++ +
Sbjct: 71 KDNQITDLAP--LKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT---DV 122
Query: 201 EPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYV 260
P S L+ D Q+T+IS L +L+Y+
Sbjct: 123 TPLAGLSNLQVLYLD--------------LNQITNIS------------PLAGLTNLQYL 156
Query: 261 DLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVSNNKLQG 318
+ + ++ P L KL L + IS P+ NL + + NN++
Sbjct: 157 SIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS----PLASLPNLIEVHLKNNQISD 209
Query: 319 HIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE 378
P+ N L + L+N ++ Q
Sbjct: 210 VSPL---ANTSN-----------------------------LFIVTLTNQTITNQ---PV 234
Query: 379 FNLTKLKRLNLDGNHFIGDI-PKTLSNCSALQGLYISDNNISGNIPTRLGNLSF 431
F L N+ I P T+S+ + N++ N+ + + N+S+
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISD-----NGTYASPNLTWNLTSFINNVSY 283
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 45/193 (23%), Positives = 68/193 (35%), Gaps = 40/193 (20%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
L LD+S+N + P++F G L L
Sbjct: 80 ALLEQLDLSDNAQLRSVD------------------------PATF-----HGLGRLHTL 110
Query: 364 VLSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNNIS 419
L L LF L L+ L L N + +P T + L L++ N IS
Sbjct: 111 HLDRCGLQELGPGLFR---GLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSC--SSPF 477
L LD +++ NR+ P AF L L L L NN+S +LP+ +
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLR 225
Query: 478 NIRRVHLSKNMLQ 490
++ + L+ N
Sbjct: 226 ALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 55/283 (19%), Positives = 89/283 (31%), Gaps = 70/283 (24%)
Query: 397 DIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHL 456
+P + +A Q +++ N IS L + + +N L +AF L L
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 457 EILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQL 516
E LDLS N S+ P + L +L
Sbjct: 83 EQLDLSDNAQLRSVD-----------------------------------PATFHGLGRL 107
Query: 517 RYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQD 576
L L GL+ P L LQ + L N L +P
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP--------------------- 145
Query: 577 PQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQ 636
L L L+ + + + + LHS+ L L N+ + +
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERA---------FRGLHSLDRLLLHQNR-VAHVHPH 195
Query: 637 I-GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
+L R+ TL L NNL+ + ++ ++ L L+ N
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 28/239 (11%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
+ A+ + + L + ++ + L + + N L+ L L LD
Sbjct: 28 VGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETS 223
+S N ++ + L + L L Q + F + L+ +
Sbjct: 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ--------YLYLQ 137
Query: 224 HSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLK 283
+ L ++ F +L ++ L N P L
Sbjct: 138 DN------ALQALP------DDTF----RDLGNLTHLFLHG-NRISSVPERAFRGLHSLD 180
Query: 284 RLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
RL L + P L L + N L +P E L L L + N +
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 30/172 (17%)
Query: 61 LNASLFTSFQQLELLDLS------------ILNFKNLEYFNMDFC-------TAFSNSFL 101
++A+ FT LE LDLS L ++D C F
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--- 127
Query: 102 QMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRL 161
+A+L+YL L ++ L + D +L L + + N +S L L
Sbjct: 128 -----LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 162 LDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD 213
L + N++ + +L + L+L N+ ++ E L++
Sbjct: 182 LLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLR 231
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 16/145 (11%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L LF L+ L L + L F + + +L +L L + +
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPD------DTFRD--------LGNLTHLFLHGNRI 165
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
+ ++ ++ L L + + +N ++ P +L L L + N L+ + + L
Sbjct: 166 S-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAP 223
Query: 181 LTYIEELWLSNNHFQISISLEPFFN 205
L ++ L L++N + P +
Sbjct: 224 LRALQYLRLNDNPWVCDCRARPLWA 248
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Query: 622 LDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681
+ L N++ + L L N L F+ + +E LDLS N +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 682 PPRLIE-LNALAVFSVAFNNLS 702
P L L + L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQ 118
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-12
Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 35/165 (21%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
N++ L ++N + PI L NL L + + L L
Sbjct: 66 HNIKDLTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSG-----LTSLTLL 117
Query: 364 VLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP 423
+S+++ + +K L K+ ++L N I DI L L+ L I + +
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH---- 172
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG 468
+ ++ L L I G
Sbjct: 173 ----DYRGIE------------------DFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 20/145 (13%), Positives = 53/145 (36%), Gaps = 17/145 (11%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
+K L ++ H + +S S L+ L I +++ + L L+ L + + +
Sbjct: 64 YAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 440 NRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSY 499
+ + I + L + +DLS N + + ++ + ++ +
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL-------------NIQF 168
Query: 500 NRLNSNIPDWMNRLPQLRYLILANN 524
+ ++ + P+L L +
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 66 FTSFQQLELLDLSILNFKNLEYF-NMDFCTAFSNSFLQMSEL--MASLKYLSLSNSYLNG 122
S + L ++++ + +EY N+ T + + + +++L+ L + +
Sbjct: 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102
Query: 123 TILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLT 182
+ L L L ++I + S+ + L + +D+S+N +I PL L
Sbjct: 103 DKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLP 159
Query: 183 YIEELWLSNNHFQISISLEPFFNHSKLKFFD 213
++ L + + + + KL
Sbjct: 160 ELKSLNIQFD--GVH-DYRGIEDFPKLNQLY 187
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 14/164 (8%)
Query: 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKL 316
L Y+ L+++N+T +E +K L++ NI P+ NL L + +
Sbjct: 46 LTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGKDV 100
Query: 317 QGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFS 376
+ L +L +L+++ +A + SI + + + LS N +
Sbjct: 101 TSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINT-----LPKVNSIDLSYNGAITDIMP 154
Query: 377 KEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG 420
+ L +LK LN+ + + D + + + L LY I G
Sbjct: 155 LK-TLPELKSLNIQFDG-VHDY-RGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 28/185 (15%), Positives = 69/185 (37%), Gaps = 22/185 (11%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
L + +I T + ++L + +++ N++ ++ T + + + + N
Sbjct: 21 TFKAYLNGLLGQSS-TANI--TEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75
Query: 440 NRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF-NIRRVHLSKNMLQGPLLG--- 495
+ L +LE L + +++ S ++ + +S + +L
Sbjct: 76 IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 496 --------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSH 547
DLSYN ++I + LP+L+ L + +G+ ++ KL +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIED--FPKLNQLYAFS 190
Query: 548 NNLSG 552
+ G
Sbjct: 191 QTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 41/200 (20%)
Query: 503 NSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562
N NIPD + + G + +N L + L++ N++ +++
Sbjct: 14 NVNIPD-----STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT--------DLT 60
Query: 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622
+ ++ L N + + L ++ L
Sbjct: 61 G----------------IEYAHNIKDLTINNIHATNYNPISG-----------LSNLERL 93
Query: 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIP 682
+ + + + L+ + L++SH+ + + +V S+DLSYN I
Sbjct: 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153
Query: 683 PRLIELNALAVFSVAFNNLS 702
P L L L ++ F+ +
Sbjct: 154 P-LKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-09
Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 9/153 (5%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
A L Q +++ +L Y + + + E ++K L+++N +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGI---EYAHNIKDLTINNIHA 78
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
+ L L+ + I +++ L+ LT L LLD+S + + + +
Sbjct: 79 TNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSILTKINT 134
Query: 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFD 213
L + + LS N I+ + P +LK +
Sbjct: 135 LPKVNSIDLSYNG-AIT-DIMPLKTLPELKSLN 165
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 8e-12
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 18/171 (10%)
Query: 360 LEYLVLSNNSLQGQLFSKEF--NLTKLKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDN 416
L LS+N+L +L ++ LT L L L NH + I L+ L +S N
Sbjct: 41 TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98
Query: 417 NISGNIPTR-LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSS 475
++ + +L L+ +++ NN + +AF + L+ L LS+N IS P
Sbjct: 99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP---- 152
Query: 476 PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQL--RYLILANN 524
+ N L +L DLS N+L + +LP L L NN
Sbjct: 153 ----VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 9e-08
Identities = 47/175 (26%), Positives = 63/175 (36%), Gaps = 29/175 (16%)
Query: 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL----FGPF-PLPIHCHKNLRVLD 310
+DLSH NL+R W + L L L + L F P+P NLR LD
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-----NLRYLD 94
Query: 311 VSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCF----YLEYLVLS 366
+S+N L + + L L VL + N + F L+ L LS
Sbjct: 95 LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDR--------NAFEDMAQLQKLYLS 144
Query: 367 NN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSAL--QGLYISDN 416
N +L L KL L+L N L A GLY+ +N
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 39/187 (20%)
Query: 496 DLSYNRLNSNIPDWM-NRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQI 554
DLS+N L+ +W RL L L+L++N L + L+ +DLS N+L +
Sbjct: 45 DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TL 103
Query: 555 PHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH-KYLTNFTTKQRLYTYEV 613
+ L L++L +NH + +
Sbjct: 104 D---------------------EFLFSDLQALEVLLLY-NNHIVVVDRNAFED------- 134
Query: 614 QPLHSMSGLDLSCNKLIGEIPLQI----GELSRIHTLNLSHNNLTGESPVTFSHMKQVES 669
+ + L LS N++ P+++ +L ++ L+LS N L +
Sbjct: 135 --MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191
Query: 670 LDLSYNN 676
L +N
Sbjct: 192 NGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 43/189 (22%)
Query: 454 RHLEILDLSRNNISGSLPSCSSP---FNIRRVHLSKNMLQ----GPLLG-------DLSY 499
+ +LDLS NN+S L + +P N+ + LS N L + DLS
Sbjct: 39 SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 500 NRLNSNIPDWM-NRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCL 558
N L++ + +++ + L L L+L NN + + +LQ + LS N +S + P
Sbjct: 98 NHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP--- 152
Query: 559 YNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHS 618
+L +LP+L +L + N K L + P
Sbjct: 153 -----------VELIKD----GNKLPKLMLLDLSS-------NKLKKLPLTDLQKLPAWV 190
Query: 619 MSGLDLSCN 627
+GL L N
Sbjct: 191 KNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 616 LHSMSGLDLSCNKLIGEIPLQI-GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674
+ ++ LDLS N L + + +L + L L +N++ F M Q++ L LS
Sbjct: 87 VPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 675 NNLNGKIPPRLIE----LNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYE--GNPFLC 727
N ++ + P LI+ L L + ++ N L + + + ++ NP C
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 22/149 (14%)
Query: 66 FTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTIL 125
T L L LS + + AF + +L+YL LS+++L L
Sbjct: 60 PTRLTNLHSLLLSHNHLNFISS------EAFVP--------VPNLRYLDLSSNHL--HTL 103
Query: 126 DQG-LCELVYLQEVNIDRNNLSGSLPW-CLANLTYLRLLDVSFNQLT--ENISSSPLMNL 181
D+ +L L+ + + N++ + ++ L+ L +S NQ++ L
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162
Query: 182 TYIEELWLSNNHFQISISLEPFFNHSKLK 210
+ L LS+N + + L
Sbjct: 163 PKLMLLDLSSNKLK-KLPLTDLQKLPAWV 190
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 622 LDLSCNKLIGEIPLQI--GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679
LDLS N + + + L+ +H+L LSHN+L S F + + LDLS N+L+
Sbjct: 44 LDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH- 101
Query: 680 KIPPR-LIELNALAVFSVAFNNLS 702
+ +L AL V + N++
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV 125
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 46/212 (21%)
Query: 360 LEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIP-KTLSNCSALQGLYISDNN 417
+ L L L+ + S F NL + R+ + + + + + N S + + I +
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 418 ISGNIP----TRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNISGSLPS 472
I L L FL + N L+ P + IL+++ N S+P
Sbjct: 92 NLTYIDPDALKELPLLKFLG---IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 473 CSSPFNIRRVHLSKNMLQG--PLLG--DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEG 528
N QG L N S + + +L + L N
Sbjct: 149 --------------NAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKN---- 189
Query: 529 EMPLQLCWL---------NKLQLVDLSHNNLS 551
L + + L+D+S +++
Sbjct: 190 ---KYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 50/310 (16%), Positives = 96/310 (30%), Gaps = 89/310 (28%)
Query: 128 GLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187
CE ++ + ++ +P + L+L L I S NL I +
Sbjct: 6 PPCECHQEEDFRVTCKDIQ-RIPSLPPSTQTLKL---IETHLRT-IPSHAFSNLPNISRI 60
Query: 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIF 247
++S + L + +S F
Sbjct: 61 YVSIDV--------------------------------------TLQQL------ESHSF 76
Query: 248 PKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPFPLPIHCHKN 305
Y+ + ++++ + L++ LK L + N + +F ++
Sbjct: 77 ----YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK-VYSTDI 131
Query: 306 LRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVL 365
+L++++N IP NAF G L L
Sbjct: 132 FFILEITDNPYMTSIP----------------VNAFQGLCNE------------TLTLKL 163
Query: 366 SNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSN-CSALQGLYISDNNISGNIP 423
NN + FN TKL + L+ N ++ I K S L +S +++ +P
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221
Query: 424 TR-LGNLSFL 432
++ L +L L
Sbjct: 222 SKGLEHLKEL 231
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 51/278 (18%), Positives = 95/278 (34%), Gaps = 61/278 (21%)
Query: 405 CSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN 464
C + ++ +I IP+ + L + L AF L ++ + +S +
Sbjct: 10 CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65
Query: 465 NISGSLPSCSSPFNIRRVHLSK-NMLQGPLLGDLSYNRLNSNIP-DWMNRLPQLRYLILA 522
L S S F +LSK + ++ R + I D + LP L++L +
Sbjct: 66 VTLQQLESHS--FY----NLSKVTHI------EIRNTRNLTYIDPDALKELPLLKFLGIF 113
Query: 523 NNGLEGEMP--LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQIL 580
N GL+ P ++ + +++++ N IP + F
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP--------------VNAFQGLCNET 158
Query: 581 YQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP----LHSMSGLDLSCNKLIGEIPLQ 636
L LY N FT VQ + + L+ NK + I
Sbjct: 159 LTL----KLYNN--------GFT--------SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198
Query: 637 I--GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672
G S L++S ++T H+K++ + +
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 68/435 (15%), Positives = 137/435 (31%), Gaps = 63/435 (14%)
Query: 74 LLDLSILNFKNLEYFNMDFCTAFSN-SFLQMSELMASLKYLSLSNSYLNGTILDQGLCEL 132
L L+ +LE +D C+ F+ L + +K L + S + L E
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHE- 186
Query: 133 VYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNN 192
L +L L F +++ + N + + + +
Sbjct: 187 ----------------LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230
Query: 193 HFQISISLEPFFNH-SKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFL 251
+ + + + + + +L +L + L G + + P
Sbjct: 231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILF 289
Query: 252 YHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN-ISLFGPFPLPIHCHKNLRVLD 310
+ +DL + L E L++K L+ L N I G L +C K L+ L
Sbjct: 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC-KQLKRLR 348
Query: 311 VSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLS---- 366
+ + + E G V + ++ GC LEY+ +
Sbjct: 349 IERGADEQGMEDEEGLV----------SQRGLIALAQ--------GCQELEYMAVYVSDI 390
Query: 367 -NNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP------KTLSNCSALQGLYISDN--N 417
N SL+ + + NL + + LD I D+P L C L+
Sbjct: 391 TNESLE-SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449
Query: 418 IS----GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS--GSLP 471
++ I N+ ++ + EG + +L+ L++ S
Sbjct: 450 LTDLGLSYIGQYSPNVRWML-LGYVGESDEG-LMEFSRGCPNLQKLEMRGCCFSERAIAA 507
Query: 472 SCSSPFNIRRVHLSK 486
+ + ++R + +
Sbjct: 508 AVTKLPSLRYLWVQG 522
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 6e-06
Identities = 56/381 (14%), Positives = 114/381 (29%), Gaps = 60/381 (15%)
Query: 45 SLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNF---------------KNLEYFN 89
+L ++ + +L+ L LE+L+ + F ++L
Sbjct: 168 TLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226
Query: 90 MDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLS-GS 148
+ + A+L+ + + + ++ + + + + + +
Sbjct: 227 VGDFEILELVGF--FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284
Query: 149 LPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQIS-ISLEPFFNHS 207
+P +R LD+ + L + + +E L N I LE +
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN---VIGDRGLEVLAQYC 341
Query: 208 K----LKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLS 263
K L+ G +E ++ G+ +LEY+ +
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVS--------------QRGLI-ALAQGCQELEYMAVY 386
Query: 264 HLNLTREFPNWLLEKNKKLKRLSLVNISL----------FGPFPLPIHCHKNLRVLDVSN 313
++T E + K L LV + G L I C K LR
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYL 445
Query: 314 N--KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQ 371
L IG+ PN+ + + + F GC L+ L +
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR----GCPNLQKLEMRGCCFS 501
Query: 372 GQ-LFSKEFNLTKLKRLNLDG 391
+ + + L L+ L + G
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQG 522
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 5e-11
Identities = 72/469 (15%), Positives = 154/469 (32%), Gaps = 59/469 (12%)
Query: 42 KVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFL 101
KV S++L G D L + + + +S ++ LE + +
Sbjct: 67 KVRSVELKGKPHFADFN--LVPDGWGGYVYPWIEAMS-SSYTWLEEIRLKRMVVTDDCLE 123
Query: 102 QMSELMASLKYLSLSNSYLNGTILDQGLCELV----YLQEVNIDRNNLSGSLPWCLANLT 157
+++ + K L LS+ GL + L+E+++ +++ L++
Sbjct: 124 LIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180
Query: 158 YL--RLLDVSFNQLTENISSSPLMNL----TYIEELWLSNN--------HFQISISLEPF 203
L+ ++ + L +S S L L ++ L L+ Q + LE
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240
Query: 204 FNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLS 263
D+Y+ + + S +L +S F P L ++LS
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCK---ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297
Query: 264 HLNLTREFPNWLLEKNKKLKRLSLVN-ISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIP- 321
+ + LL + KL+RL +++ I G L C K+LR L V ++ P
Sbjct: 298 YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC-KDLRELRVFPSEPFVMEPN 356
Query: 322 --------IEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQ 373
+ + P L + + + + L +
Sbjct: 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR----NRPNMTRFRLCIIEPKAP 412
Query: 374 LFSKEF-----------NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS--- 419
+ + L+RL+L G + ++ L ++ S
Sbjct: 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472
Query: 420 -GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
++ + +L L+ + + + + +L + L +S ++S
Sbjct: 473 MHHVLSGCDSLRKLE--IRDCPFGDKALLANASKLETMRSLWMSSCSVS 519
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 66/550 (12%), Positives = 145/550 (26%), Gaps = 90/550 (16%)
Query: 28 CCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLS-ILNFKNLE 86
C W +E + + + A++ F ++ ++L +F +
Sbjct: 34 CKSWYEIERWCRR----KVFIGNCYAV------SPATVIRRFPKVRSVELKGKPHFADFN 83
Query: 87 YFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDR-NNL 145
+ MS L+ + L + L+ + + +
Sbjct: 84 LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143
Query: 146 S----GSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQIS-ISL 200
S ++ NL L L + + ++ + S T + L +S ++S +L
Sbjct: 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL 203
Query: 201 EPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYV 260
E L S+ L L LE +
Sbjct: 204 ERLVTRCP-----------------------NLKSLKLNRAVPLEKLATLLQRAPQLEEL 240
Query: 261 DLSHLNL-----TREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNK 315
+ L K+L+ LS ++ P L L++S
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300
Query: 316 LQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLF 375
+Q + +++ P L L V + + C L L + +
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST-----CKDLRELRVFPSEPFVMEP 355
Query: 376 SKEF----------NLTKLKRLNLDGNHFIGD--IPKTLSNCSALQGLYISDNNISGNIP 423
+ KL+ + + + + N +
Sbjct: 356 NVALTEQGLVSVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRF------------ 402
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN-NISGSLPSCSSPFNIRRV 482
RL + + L+ + + L L LS + + +
Sbjct: 403 -RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEML 461
Query: 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILAN-NGLEGEMPLQLCWLNKLQ 541
++ DL + + S LR L + + + + L ++
Sbjct: 462 SVA-----FAGDSDLGMHHVLSG-------CDSLRKLEIRDCPFGDKALLANASKLETMR 509
Query: 542 LVDLSHNNLS 551
+ +S ++S
Sbjct: 510 SLWMSSCSVS 519
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-11
Identities = 74/476 (15%), Positives = 146/476 (30%), Gaps = 123/476 (25%)
Query: 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL----FGPFPLPIHCHKNLRVLDV 311
D++ +D+ L+ LL ++ + + L + L + + L L++
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 312 SNNKLQGHIPIEIGEVL----PNLVVLNVATNAFN----GSIPSSFGNTWPWGCFYLEYL 363
+N+L + + L + L++ G + S+ L+ L
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT-----LPTLQEL 118
Query: 364 VLSNNSLQG---QLFSK--EFNLTKLKRLNLDGNHF----IGDIPKTLSNCSALQGLYIS 414
LS+N L QL + +L++L L+ + L + L +S
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178
Query: 415 DNNISGNIPTRLG-----NLSFLDAIMMPNNRLE----GPIPSAFCQLRHLEILDLSRNN 465
+N+I+ L + L+A+ + + + + L L L N
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
Query: 466 ISGS----------LPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQ 515
+ PS +R + + + + GDL L +
Sbjct: 239 LGDVGMAELCPGLLHPSSR----LRTLWIWECGITAKGCGDLC-RVLRAK--------ES 285
Query: 516 LRYLILANNGLEGEMPLQLC-----WLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNH 570
L+ L LA N L E LC +L+ + + + + C + S
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA---CCSHFS-------- 334
Query: 571 DLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI 630
+L Q L L +S N+L
Sbjct: 335 -------SVLAQNRFLLEL---------------------------------QISNNRLE 354
Query: 631 GEIPLQIGEL-----SRIHTLNLSHNNLTGESPVTFSHM----KQVESLDLSYNNL 677
++ + S + L L+ +++ S + + + LDLS N L
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 82/490 (16%), Positives = 146/490 (29%), Gaps = 100/490 (20%)
Query: 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLS----GSLPWCLANLTYLRLLDV 164
++ L + L+ + L L Q V +D L+ + L L L++
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 165 SFNQLTEN----ISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEI 220
N+L + + I++L L N +
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-------------------TGAGCGV 104
Query: 221 ETSHSSLTPKFQLTSISLFGH--GDSG---IFPKFLYHQHDLEYVDLSHLNLTREFPNWL 275
+ S+L L + L + GD+G + L Q LE + L + +L+ L
Sbjct: 105 LS--STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162
Query: 276 ---LEKNKKLKRLSLVNISLFGP-----FPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEV 327
L K L++ N + L L + + + ++ +
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222
Query: 328 L---PNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQ----LFSKEFN 380
+ +L L + +N + L L + + + L
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282
Query: 381 LTKLKRLNLDGNHFIGD-----IPKTLSNC-SALQGLYISDNNISGNIPTRLGNLSFLDA 434
LK L+L GN +GD + +TL L+ L++ + + +
Sbjct: 283 KESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS------- 334
Query: 435 IMMPNNRLEGPIPSAFCQLRHLEILDLSRNNI--------SGSLPSCSSPFNIRRVHLSK 486
S Q R L L +S N + L S +R + L+
Sbjct: 335 -------------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS--VLRVLWLAD 379
Query: 487 NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWL-----NKLQ 541
+ L+ L +N LR L L+NN L LQL L+
Sbjct: 380 CDVSDSSCSSLAAT-LLAN--------HSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 430
Query: 542 LVDLSHNNLS 551
+ L S
Sbjct: 431 QLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 68/421 (16%), Positives = 127/421 (30%), Gaps = 117/421 (27%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN----GSIPSSFGNTWPWGCFY 359
+++ LD+ +L E+ +L V+ + I S+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-----NPA 57
Query: 360 LEYLVLSNNSLQG---QLFSKEF--NLTKLKRLNLDGNHF----IGDIPKTLSNCSALQG 410
L L L +N L + K+++L+L G + TL LQ
Sbjct: 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117
Query: 411 LYISDNNISGNIPTRLGNLSFLDAIMMPNNRLE--------------GPIPSAFCQLRHL 456
L++SDN + G + ++ P RLE P+ S
Sbjct: 118 LHLSDNLLGDA-----GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172
Query: 457 EILDLSRNNISGS----LPS--CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWM 510
+ L +S N+I+ + L SP + + L + DL + S
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASK----- 226
Query: 511 NRLPQLRYLILANNGLEGEMPLQLCW-----LNKLQLVDLSHNNLSGQIPHCLYNISFNY 565
LR L L +N L +LC ++L+ + + ++ + ++
Sbjct: 227 ---ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK---GCGDLC--- 277
Query: 566 REDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLS 625
++L L+ L L+
Sbjct: 278 ------------RVLRAKESLKEL---------------------------------SLA 292
Query: 626 CNKLIGEIPLQIGEL-----SRIHTLNLSHNNLTGESPVTFS----HMKQVESLDLSYNN 676
N+L E + E ++ +L + + T FS + + L +S N
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352
Query: 677 L 677
L
Sbjct: 353 L 353
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 47/253 (18%), Positives = 75/253 (29%), Gaps = 37/253 (14%)
Query: 384 LKRLNLDGNHFIGDIPK-TLSNCSALQGLYISDNNISGNIPTR----LGNLSFLDAIMMP 438
L + I K S L+ + IS N++ I L L + +
Sbjct: 32 AIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR--IEK 88
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLS 498
N L P AF L +L+ L +S I LP ++++V L D+
Sbjct: 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLL-----------DIQ 136
Query: 499 YNRLNSNIPDWM--NRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPH 556
N I + L L NG++ +L +NNL
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196
Query: 557 CLYNISFNYREDNHD--LFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQ 614
+ S D + L L +L+ T N K L +
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLKKLPTL-----------E 243
Query: 615 PLHSMSGLDLSCN 627
L ++ L+
Sbjct: 244 KLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 47/256 (18%), Positives = 84/256 (32%), Gaps = 46/256 (17%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
+ F+ F LE +++S LE D FSN + L + + +
Sbjct: 45 IQKGAFSGFGDLEKIEIS--QNDVLEVIEAD---VFSN--------LPKLHEIRIEKANN 91
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
I + L LQ + I + + LLD+ N I + +
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 181 LTY-IEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239
L++ LWL+ N I FN ++L E+ S ++ L +
Sbjct: 152 LSFESVILWLNKN--GIQEIHNSAFNGTQLD--------ELNLSDNN-----NLEELP-- 194
Query: 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPF-PL 298
+ +F + +D+S + P++ LE KKL+ S N+ L
Sbjct: 195 ----NDVF----HGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNLKKLPTLEKL 245
Query: 299 PIHCHKNLRVLDVSNN 314
L ++
Sbjct: 246 V-----ALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 42/243 (17%), Positives = 74/243 (30%), Gaps = 54/243 (22%)
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNI--------SLFGPFPLPIHCHKNL 306
DLE +++S ++ + KL + + F P NL
Sbjct: 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP-------NL 106
Query: 307 RVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLS 366
+ L +SN ++ H+P V+L++ N +I
Sbjct: 107 QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE-------------------- 145
Query: 367 NNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNN----ISGNI 422
NS G + L L+ N I +I + N + L L +SDNN + ++
Sbjct: 146 RNSFVGLS-------FESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197
Query: 423 PTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482
LD + R+ L+ L LP+ +
Sbjct: 198 FHGASGPVILD---ISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEA 251
Query: 483 HLS 485
L+
Sbjct: 252 SLT 254
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 46/266 (17%), Positives = 88/266 (33%), Gaps = 41/266 (15%)
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSC--SS 475
I ++P L F+ +L AF LE +++S+N++ + + S+
Sbjct: 24 IPSDLPRNAIELRFV------LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77
Query: 476 PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLC 535
+ + + K N L P+ LP L+YL+++N G++ +
Sbjct: 78 LPKLHEIRIEKA------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125
Query: 536 WLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLP-----QLQILY 590
+ L+D+ N I N ++ L+ I ++ Q+
Sbjct: 126 HSLQKVLLDIQDNINIHTIER---NSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDE 181
Query: 591 TNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLN-LS 649
N ++ L L LD+S ++ L L + L S
Sbjct: 182 LNLSDNNNLEE------LPNDVFHGASGPVILDISRTRI---HSLPSYGLENLKKLRARS 232
Query: 650 HNNLTGESPVTFSHMKQVESLDLSYN 675
NL T + + L+Y
Sbjct: 233 TYNLK--KLPTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 20/214 (9%)
Query: 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555
+++ IP + L L L+ +++S N++ I
Sbjct: 15 LCQESKVTE-IPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71
Query: 556 ----HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTY 611
L + E ++L +P+ LP LQ L + K+L +
Sbjct: 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-------- 123
Query: 612 EVQPLHSMSGLDLSCNKLIGEIPLQI--GELSRIHTLNLSHNNLTGESPVTFSHMKQVES 669
LD+ N I I G L L+ N + F+ + E
Sbjct: 124 -KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182
Query: 670 LDLSYNNLNGKIPPRLIE-LNALAVFSVAFNNLS 702
NNL ++P + + + ++ +
Sbjct: 183 NLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 39/286 (13%), Positives = 76/286 (26%), Gaps = 65/286 (22%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
E+ L + L +++S N + E I + NL + E+ + +
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN- 90
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
L I+ P+ +
Sbjct: 91 -------------------------------------NLLYIN----------PEAFQNL 103
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSL---VNISLFGPFPLPIHCHKNLRVLDV 311
+L+Y+ +S+ + P+ + + L + +NI +L +
Sbjct: 104 PNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV-GLSFESVILWL 161
Query: 312 SNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQ 371
+ N +Q I + N F G L +S +
Sbjct: 162 NKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF-----HGASGPVILDISRTRIH 215
Query: 372 GQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416
L S NL KL+ + + TL AL ++
Sbjct: 216 -SLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLTYP 256
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 9e-10
Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 24/183 (13%)
Query: 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPT--RLGNLSFLDAIMMPN 439
L+L N TL + L L + ++ + L L LD + +
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLD---LSH 86
Query: 440 NRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSC--SSPFNIRRVHLSKNMLQGPLLG-- 495
N+L+ +P L L +LD+S N ++ SLP ++ ++L N L+ G
Sbjct: 87 NQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 496 ---------DLSYNRLNSNIPDWM-NRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDL 545
L+ N L +P + N L L L+L N L +P + L L
Sbjct: 145 TPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202
Query: 546 SHN 548
N
Sbjct: 203 HGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477
+ ++P L + N L + L L+L R ++ L +
Sbjct: 25 LPPDLPKDTTILH------LSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLP 77
Query: 478 NIRRVHLSKNMLQG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLE 527
+ + LS N LQ PLLG D+S+NRL S + L +L+ L L N L+
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 528 GEMPLQLCWLNKLQLVDLSHNNLSGQIPH 556
P L KL+ + L++NNL+ ++P
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 50/222 (22%)
Query: 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN-- 289
LT++ + D + LS L F L +L +L+L
Sbjct: 21 NLTALP------PDLPK-------DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAE 66
Query: 290 ---ISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIP 346
+ + G P L LD+S+N+LQ +P +G+ LP L VL+V+ N S+P
Sbjct: 67 LTKLQVDGTLP-------VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLT-SLP 116
Query: 347 SSFGNTWPWGCFY----LEYLVLSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP 399
G L+ L L N +L L + KL++L+L N+ + ++P
Sbjct: 117 L--------GALRGLGELQELYLKGNELKTLPPGLLTP---TPKLEKLSLANNN-LTELP 164
Query: 400 K-TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440
L+ L L + +N++ IP L + N
Sbjct: 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 22/151 (14%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
+ + + +L L+L L+ + L L LS++ L
Sbjct: 46 FSLATLMPYTRLTQLNLDRAELTKLQVDGT----------------LPVLGTLDLSHNQL 89
Query: 121 NGTILDQGLCELVYLQEVNIDRNNLSGSLP-WCLANLTYLRLLDVSFNQLTENISSSPLM 179
L L L +++ N L+ SLP L L L+ L + N+L + L
Sbjct: 90 --QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145
Query: 180 NLTYIEELWLSNNHFQISISLEPFFNHSKLK 210
+E+L L+NN+ + L
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 577 PQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQ 636
L +L L + L L + LDLS N+L +PL
Sbjct: 48 LATLMPYTRLTQLNLDRAELTKLQVDG-----------TLPVLGTLDLSHNQL-QSLPLL 95
Query: 637 IGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677
L + L++S N LT + +++ L L N L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 397 DIPKTLSNCSALQGLYISDNNISGNIPTR-LGNLSFLDAIMMPNNRLEGPIPSAFCQLRH 455
D L L LYI + ++ R L L L + + + L P AF
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 456 LEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ 490
L L+LS N + +++ + LS N L
Sbjct: 82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 4e-06
Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 614 QPLHSMSGLDLSCNKLIGEIPLQ-IGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672
+++ L + + + + L+ + L + L + + L +P F ++ L+L
Sbjct: 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87
Query: 673 SYNNLNGKIPPRLIELNALAVFSVAFNNL 701
S+N L + + ++ +L ++ N L
Sbjct: 88 SFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 127 QGLCELVYLQEVNIDRNNLSGSLPW-CLANLTYLRLLDVSFNQLTENISSSPLMNLTYIE 185
L L E+ I+ L L L LR L + + L ++ +
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83
Query: 186 ELWLSNNHFQISISLEPFFN 205
L LS N + S+S +
Sbjct: 84 RLNLSFNALE-SLSWKTVQG 102
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 107 MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSF 166
+L L + N + + L L L+ + I ++ L P L L++SF
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 167 NQLTENISSSPLMNLTYIEELWLSNNHFQ 195
N L +S + L+ ++EL LS N
Sbjct: 90 NALES-LSWKTVQGLS-LQELVLSGNPLH 116
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 42/297 (14%), Positives = 96/297 (32%), Gaps = 71/297 (23%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
L + NL + D+ + S +Q ++NI ++ + + L + + +
Sbjct: 17 GLANAVKQNLGKQS-VTDL-VSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72
Query: 440 NRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSY 499
N++ S L LE L ++RN + +L S + R+ L N L
Sbjct: 73 NQISDL--SPLKDLTKLEELSVNRNRLK-NLNGIPSA-CLSRLFLDNNEL---------- 118
Query: 500 NRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLY 559
+ ++ L L L + NN L+ + L +L+KL+++DL N ++
Sbjct: 119 ----RDTDSLIH-LKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEIT-------- 163
Query: 560 NISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSM 619
+ L +L ++ + + +
Sbjct: 164 ----------------NTGGLTRLKKVNWIDLTG-------QKCVNEPVKYQP------- 193
Query: 620 SGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676
+L ++ + I +S+ + V + + + ++
Sbjct: 194 --------ELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSE 242
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 25/165 (15%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
++ N+++Q + T LK L+L N I D+ L + + L+ L ++ N +
Sbjct: 43 VQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQ-ISDL-SPLKDLTKLEELSVNRNRLK 98
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
LS L + NN L + L++LEIL + N + S+ +
Sbjct: 99 NLNGIPSACLSRLF---LDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIVMLGFLSKL 152
Query: 480 RRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN 524
+ L N + +N L ++ ++ L
Sbjct: 153 EVLDLHGNEI--------------TNTGGLTR-LKKVNWIDLTGQ 182
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 24/192 (12%)
Query: 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVSNN 314
++ + + N+ ++ LK L L + IS P + L L V+ N
Sbjct: 43 VQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRN 95
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL 374
+L+ I L L + N S + LE L + NN L+
Sbjct: 96 RLKNLNGIP----SACLSRLFLDNN--ELRDTDSLIH-----LKNLEILSIRNNKLKS-- 142
Query: 375 FSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDA 434
L+KL+ L+L GN I + L+ + + ++ L +
Sbjct: 143 IVMLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200
Query: 435 IMMPNNRLEGPI 446
+ P+ R P
Sbjct: 201 VKDPDGRWISPY 212
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 46/270 (17%), Positives = 83/270 (30%), Gaps = 52/270 (19%)
Query: 153 LANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFF 212
L ++ +T+ L+ ++ N++ Q SL + LK
Sbjct: 15 DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLK-- 66
Query: 213 DGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFP 272
E+ SH+ Q++ +S L LE + ++ L
Sbjct: 67 ------ELHLSHN------QISDLS------------PLKDLTKLEELSVNRNRLKNLNG 102
Query: 273 NWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLV 332
+ L RL L N L L KNL +L + NNKL+ I + L L
Sbjct: 103 ----IPSACLSRLFLDNNELRDTDSL--IHLKNLEILSIRNNKLKS---IVMLGFLSKLE 153
Query: 333 VLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRL-NLDG 391
VL++ N + + ++ L+ + + L + + DG
Sbjct: 154 VLDLHGNEIT-NTGGLTRLK------KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206
Query: 392 NHFIGDIPKTLSNCSALQGLYISDNNISGN 421
P +SN + +
Sbjct: 207 RWI---SPYYISNGGSYVDGCVLWELPVYT 233
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 48/245 (19%), Positives = 83/245 (33%), Gaps = 51/245 (20%)
Query: 107 MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSF 166
+A+ +L + EL +Q N D +N+ SL + T L+ L +S
Sbjct: 18 LANAVKQNLGKQSVTDL---VSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSH 72
Query: 167 NQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSS 226
NQ+++ SPL +LT +EEL ++ N + + L D
Sbjct: 73 NQISD---LSPLKDLTKLEELSVNRNR----LKNLNGIPSACLSRLFLD----------- 114
Query: 227 LTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLS 286
+L L H +LE + + + L L KL+ L
Sbjct: 115 ---NNELRDTD------------SLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLD 156
Query: 287 LVN--ISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGS 344
L I+ G + K + +D++ K E + P L + N +
Sbjct: 157 LHGNEITNTG----GLTRLKKVNWIDLTGQK----CVNEPVKYQPELYITNTVKDPDGRW 208
Query: 345 IPSSF 349
I +
Sbjct: 209 ISPYY 213
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 25/155 (16%)
Query: 66 FTSFQQLELLDLS---------ILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLS 116
F L+ L LS + + LE +++ + + + + L L L
Sbjct: 59 MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA----CLSRLFLD 114
Query: 117 NSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSS 176
N+ L T L L L+ ++I N L S+ L L+ L +LD+ N++T ++
Sbjct: 115 NNELRDT---DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT---NTG 166
Query: 177 PLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKF 211
L L + + L+ EP +L
Sbjct: 167 GLTRLKKVNWIDLTGQK----CVNEPVKYQPELYI 197
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 44/190 (23%)
Query: 513 LPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDL 572
L L + + + L+ +Q + ++N+
Sbjct: 18 LANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ--------------------- 54
Query: 573 FDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE 632
+ L+ L+ +++ L+ L + L ++ N+L
Sbjct: 55 ---SLAGMQFFTNLKELHLSHNQISDLSPLKD-----------LTKLEELSVNRNRLKN- 99
Query: 633 IPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALA 692
L + + L L +N L H+K +E L + N L I L L+ L
Sbjct: 100 --LNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLE 153
Query: 693 VFSVAFNNLS 702
V + N ++
Sbjct: 154 VLDLHGNEIT 163
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 24/185 (12%)
Query: 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN---NISGNIPTRLGNLSFLDAIMMP 438
K+L+L N K + L+ LY++DN + I L NL L +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VT 93
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF----NIRRVHLSKNMLQGPLL 494
+N+L+ F QL +L L L RN + SLP F + + L N LQ
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLP--PRVFDSLTKLTYLSLGYNELQSLPK 150
Query: 495 G-----------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLV 543
G L N+L ++L +L+ L L NN L+ L KL+++
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Query: 544 DLSHN 548
L N
Sbjct: 211 QLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFY----L 360
LR+L +++NKLQ +P I + L NL L V N ++P G F L
Sbjct: 62 KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPI--------GVFDQLVNL 111
Query: 361 EYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTL-SNCSALQGLYISDNNI 418
L L N L+ L + F +LTKL L+L N + +PK + ++L+ L + +N +
Sbjct: 112 AELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 419 S---GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN 464
+L L L + NN+L+ AF L L++L L N
Sbjct: 170 KRVPEGAFDKLTELKTLK---LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFY----L 360
+ + LD+ +NKL +P + L L +L + N ++P+ G F L
Sbjct: 38 DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPA--------GIFKELKNL 87
Query: 361 EYLVLSNNSLQ---GQLFSKEFNLTKLKRLNLDGNHFIGDIPKTL-SNCSALQGLYISDN 416
E L +++N LQ +F L L L LD N + +P + + + L L + N
Sbjct: 88 ETLWVTDNKLQALPIGVFD---QLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN 143
Query: 417 NISGNIP----TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP 471
+ ++P +L +L L + NN+L+ AF +L L+ L L N + +P
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELR---LYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 55/258 (21%), Positives = 87/258 (33%), Gaps = 79/258 (30%)
Query: 421 NIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS--CSSPFN 478
NIP L L +N+L AF +L L +L L+ N + +LP+ N
Sbjct: 34 NIPADTKKL-DLQ-----SNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 479 IRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLN 538
+ + ++ N LQ L + D +L L L L N L+ P L
Sbjct: 87 LETLWVTDNKLQ----------ALPIGVFD---QLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598
KL + L +N L +P +FD+ L L+ L
Sbjct: 134 KLTYLSLGYNELQ-SLPK--------------GVFDK-------LTSLKELR-------- 163
Query: 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQI-GELSRIHTLNLSHNNLTGES 657
L N+L +P +L+ + TL L +N L
Sbjct: 164 -------------------------LYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Query: 658 PVTFSHMKQVESLDLSYN 675
F +++++ L L N
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYL 120
L + F +L LL L+ + L + F ++ L + L ++++ L
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLP----------AGIFKELKNL----ETLWVTDNKL 97
Query: 121 NGTILDQGLCE-LVYLQEVNIDRNNLSGSLP-WCLANLTYLRLLDVSFNQLTENISSSPL 178
L G+ + LV L E+ +DRN L SLP +LT L L + +N+L ++
Sbjct: 98 --QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153
Query: 179 MNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISL 238
LT ++EL L NN + + F ++LK D + +L + L
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 239 FG 240
Sbjct: 213 QE 214
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 7e-08
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS--GNIPTRLGNLSFLDAIMM 437
N + + L+L G I I + + SDN I P L L L +
Sbjct: 17 NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGFP-LLRRLKTLL---V 71
Query: 438 PNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
NNR+ L L L L+ N++
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 276 LEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLN 335
+ + L L + L +D S+N+++ ++ +L L L
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATL-DQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70
Query: 336 VATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGN 392
V N G L L+L+NNSL +L L L + N
Sbjct: 71 VNNNRI-----CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 103 MSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLL 162
+ + + S++ + G L L+ + ++ N + L L L
Sbjct: 37 LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93
Query: 163 DVSFNQLTENISSSPLMNLTYIEELWLSNN 192
++ N L E PL +L + L + N
Sbjct: 94 ILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 28/144 (19%)
Query: 387 LNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS--GNIPTRLGNLSFLDAIMMPNN---R 441
+ L I + +N + L + I N+ L +D +N +
Sbjct: 2 VKLTAEL-IEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAID---FSDNEIRK 56
Query: 442 LEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF-NIRRVHLSKNMLQGPLLGDLSYN 500
L+G F LR L+ L ++ N I ++ + L+ N L LGDL
Sbjct: 57 LDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDP- 108
Query: 501 RLNSNIPDWMNRLPQLRYLILANN 524
+ L L YL + N
Sbjct: 109 ---------LASLKSLTYLCILRN 123
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 41/272 (15%), Positives = 88/272 (32%), Gaps = 30/272 (11%)
Query: 432 LDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG 491
L A + + + + + L ++ ++ + R LS
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTV 363
Query: 492 PLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551
S L P+ L + L+ A + L E L + + L+ VD
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE-KETLQYFSTLKAVDPMRAAYL 422
Query: 552 GQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTY 611
+ ++ + + +++L+ + + L +
Sbjct: 423 DDLRSKFLL--------------ENSVLKMEYADVRVLHLAHKDLTVLCHL--------- 459
Query: 612 EVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLD 671
+ L ++ LDLS N+L +P + L + L S N L +++ +++ L
Sbjct: 460 --EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELL 514
Query: 672 LSYNNLNG-KIPPRLIELNALAVFSVAFNNLS 702
L N L L+ L + ++ N+L
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 5e-07
Identities = 60/411 (14%), Positives = 118/411 (28%), Gaps = 94/411 (22%)
Query: 192 NHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFL 251
+ + + L + L + + D P +
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHV 299
Query: 252 YHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDV 311
+ L W ++K L + + L ++
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW---CRDSATDEQLFRCEL 356
Query: 312 SNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQ 371
S K + E+ E L L P + L ++L +L
Sbjct: 357 SVEKST-VLQSEL-ESCKELQELE------------------PENKWCLLTIILLMRALD 396
Query: 372 GQLFSKEF--NLTKLKRLNLDG--------NHFIGDIPKTLSNCSALQGLYISDNNISGN 421
L+ KE + LK ++ + F+ + + ++ L+++ ++
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--- 453
Query: 422 IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRR 481
T L +L QL + LDLS N + P+ ++ +
Sbjct: 454 --TVLCHLE---------------------QLLLVTHLDLSHNRLRALPPALAALRCLEV 490
Query: 482 VHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEG-EMPLQLCWLNKL 540
+ S N L N+ + LP+L+ L+L NN L+ L +L
Sbjct: 491 LQASDNAL--------------ENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYT 591
L++L N+L Q +E ++ LP + + T
Sbjct: 536 VLLNLQGNSLC-QEE--------GIQE----------RLAEMLPSVSSILT 567
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 1e-05
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 105 ELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDV 164
E + + +L LS++ L L L L L+ + N L ++ +ANL L+ L +
Sbjct: 460 EQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL 515
Query: 165 SFNQLTENISSSPLMNLTYIEELWLSNNHFQ 195
N+L ++ + PL++ + L L N
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 6e-05
Identities = 47/319 (14%), Positives = 89/319 (27%), Gaps = 56/319 (17%)
Query: 23 FFNNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNF 82
+W + V DL LN L ++
Sbjct: 279 DEAPLSVEWRTPDGRNRPSHVWLCDLP--------AASLNDQLPQHTFRVIWTGSDSQKE 330
Query: 83 KNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDR 142
L + S + Q+ S++ ++ S L LQE+ +
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE---------SCKELQELEPEN 381
Query: 143 NNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEP 202
++ + L L + + L ++ + + S L
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFS---------TLKAVDPMRAAYLDDLRSKFL-- 430
Query: 203 FFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDL 262
+ + + + +H LT + L + ++DL
Sbjct: 431 --LENSVLKMEYADVRVLHLAHK------DLTVLC------------HLEQLLLVTHLDL 470
Query: 263 SHLNLTREFPNWLLEKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVSNNKLQGHI 320
SH L P L + L+ L + + + L+ L + NN+LQ
Sbjct: 471 SHNRLRALPPA--LAALRCLEVLQASDNALENVDG----VANLPRLQELLLCNNRLQQSA 524
Query: 321 PIEIGEVLPNLVVLNVATN 339
I+ P LV+LN+ N
Sbjct: 525 AIQPLVSCPRLVLLNLQGN 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 78/499 (15%), Positives = 149/499 (29%), Gaps = 146/499 (29%)
Query: 230 KFQLTSISLFGHGDSGIFPKFLYHQHDLEYVD---LSHLNLTREFPNWLLEKNKKLKRL- 285
KF ++ I S + ++ Q D Y D + N++R P L + L L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALLELR 148
Query: 286 SLVNISLFGPFPLPIHCHKNLRVLDV-SNNKLQGHIP-----IEIGEVLPNLVVLNVATN 339
N+ + G K LDV + K+Q + + + VL +
Sbjct: 149 PAKNVLIDGVL----GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 340 AFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKR--LNLDGNHFIGD 397
P+ W + + L +S+Q +L + + L L +
Sbjct: 205 LLYQIDPN-----WTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLL------N 252
Query: 398 I--PKTLS----NCSALQGLYISDNNISGNIPTR-LGNLSFLDAIMMPNNRLEGPIPSAF 450
+ K + +C L + TR FL A + L+
Sbjct: 253 VQNAKAWNAFNLSCKIL-------------LTTRFKQVTDFLSAATTTHISLD-HHSMTL 298
Query: 451 CQLRHLEILDLSRNNISGSLPS--CS-SPF-----------------NIRRVHLSK---- 486
+L + LP + +P N + V+ K
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 487 -----NMLQGPLLGDLSYNRL-----NSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW 536
N+L+ + ++RL +++IP L ++ + ++ ++ + +
Sbjct: 359 IESSLNVLEPAEYRKM-FDRLSVFPPSAHIP--TILLS-----LIWFDVIKSDVMVVVNK 410
Query: 537 LNKLQLVDLSHNNLSGQIPHCL--------------------YNISFNYREDNHDLF-DQ 575
L+K LV+ + IP YNI + D+ DL
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF--DSDDLIPPY 468
Query: 576 DPQILYQLPQLQILYTNYH-----NHKYLTNFTTKQRLYTYEVQPLHSMSGLDLS--CNK 628
Q Y + +H + + +T F ++ LD K
Sbjct: 469 LDQYFYS-------HIGHHLKNIEHPERMTLFR---MVF------------LDFRFLEQK 506
Query: 629 LIGEIPLQIGELSRIHTLN 647
+ + S ++TL
Sbjct: 507 IRHDSTAWNASGSILNTLQ 525
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 3e-05
Identities = 55/387 (14%), Positives = 120/387 (31%), Gaps = 98/387 (25%)
Query: 378 EFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMM 437
N D + D+PK++ + + + +S + +SG T ++
Sbjct: 23 SVFEDAFVD-NFDCKD-VQDMPKSILSKEEIDHIIMSKDAVSG---TLR----LFWTLLS 73
Query: 438 PNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS-CSSPFNIRRVHLS-KNMLQ--GPL 493
+ F + E+L ++ + + + P + R+++ ++ L +
Sbjct: 74 KQEE----MVQKFVE----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 494 LGDLSYNRLN--SNIPDWMNRLPQLRYLIL----------------ANNGLEGEMPLQLC 535
+ +RL + + L + +++ + ++ +M ++
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 536 WLN-------KLQLVDLSHNNLSGQIP---HCLYNISFNYREDNHDLFD----------- 574
WLN + L L L QI + S N + H +
Sbjct: 186 WLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 575 ----------QDPQILYQL-PQLQILYT--NYHNHKYLTNFTTKQRLYTYEVQPLHSMSG 621
Q+ + +IL T +L+ TT + L
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 622 LDLSCNKL---IGEIPLQIGELSRIHTLNLSHNNLTGES----PVTFSHMKQV------E 668
L L ++P ++ + LS + ES T+ + K V
Sbjct: 304 KSLLLKYLDCRPQDLPREV---LTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 669 SLDLSYNNLNGKIPPRLIEL-NALAVF 694
++ S N L P ++ + L+VF
Sbjct: 358 IIESSLNVLE---PAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 3e-05
Identities = 84/479 (17%), Positives = 151/479 (31%), Gaps = 125/479 (26%)
Query: 48 LDGTRKLGDGEGYLNASLFTSFQQLELLDLSI--LNFKN-------LEYFNMDFCTAFSN 98
+DG LG G+ ++ + S++ +D I LN KN LE
Sbjct: 155 IDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDP 211
Query: 99 SFLQMSELMASLKYLSLS-NSYLNGTILDQGLCE-LVYLQEVNIDRNNLSGSLPWC--LA 154
++ S+ +++K S + L + + L+ L V + + C L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILL 270
Query: 155 NLTYLRLLDVSFNQLTENISSSPL-MNLTYIEEL-----WLSN------------NHFQI 196
+ ++ D T +IS M LT E +L N ++
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 197 SI---SLEPFFNHSK-LKFFDGDIYAE-IETSHSSLTPK-FQLTSISLFGHGDSGIFPK- 249
SI S+ K + D IE+S + L P ++ +F +FP
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR----KMFD--RLSVFPPS 384
Query: 250 ---------FLYHQHDLEYVDLSHLNLTREFPNW-LLEKNKKLKRLSLVNISLFGPFPLP 299
++ V + + + + L+EK K +S+ +I L
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMV----VVNKLHKYSLVEKQPKESTISIPSIY------LE 434
Query: 300 IHCHKNLRVLDVSNNKLQGHIPI----EIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPW 355
+ N+ H I I + + + IP +
Sbjct: 435 LKVK--------LENEYALHRSIVDHYNIPKTFDS-----------DDLIPPYLDQYF-- 473
Query: 356 GCFYLEY-LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGD-IPKTLSNCSA------ 407
++ + L + + LF F L+ F+ I + +A
Sbjct: 474 -YSHIGHHLKNIEHPERMTLFRMVF-------LDF---RFLEQKIRHDSTAWNASGSILN 522
Query: 408 -LQGL-----YISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460
LQ L YI DN+ RL N + LD + L I S + L + ++
Sbjct: 523 TLQQLKFYKPYICDND---PKYERLVN-AILDFLPKIEENL---ICSKYTDLLRIALMA 574
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 54/367 (14%), Positives = 95/367 (25%), Gaps = 104/367 (28%)
Query: 233 LTSISLFGH--GDSGIFP--KFLYHQHDLEYVDLSHLNLTREFPNWL---LEKNKKLKRL 285
+ SL L ++ + LS + E WL + K L+
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 286 SLVNISLFGPFPLPIHC----------HKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLN 335
+I L + +S+N + + L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK----- 120
Query: 336 VATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSL-------------QGQLFSKEFNLT 382
LE+L L NN L + + K N
Sbjct: 121 ---------------------HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159
Query: 383 KLKRLNLDGNHFIGD-----IPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMM 437
L+ + N + + KT + L + + N I ++
Sbjct: 160 PLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGI--------RPEGIEHLLL- 209
Query: 438 PNNRLEGPIPSAFCQLRHLEILDLSRNNI--------SGSLPSCSSPFNIRRVHLSKNML 489
+ L++LDL N + +L S N+R + L+
Sbjct: 210 ----------EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP---NLRELGLNDC-- 254
Query: 490 QGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW-----LNKLQLVD 544
LL + N L+ L L N +E + L + L ++
Sbjct: 255 ---LLSARGAAAVVDAFSKLEN--IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309
Query: 545 LSHNNLS 551
L+ N S
Sbjct: 310 LNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 36/222 (16%), Positives = 67/222 (30%), Gaps = 53/222 (23%)
Query: 358 FYLEYLVLSNNSLQGQ----LFSKEFNLTKLKRLNLDGNHFIGD-----IPKTLSNCSAL 408
F +E L +++ + +F+ +K + L GN IG + + +++ L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDL 62
Query: 409 QGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNI-- 466
+ SD R+ + + + A + L + LS N
Sbjct: 63 EIAEFSDIFTG-----RVKDEIPEALRL---------LLQALLKCPKLHTVRLSDNAFGP 108
Query: 467 ------SGSLPSCSSPFNIRRVHLSKNMLQ---GPLLGD-LSYNRLNSNIPDWMNRLPQL 516
L + + ++L N L G + L +N P L
Sbjct: 109 TAQEPLIDFLSKHTP---LEHLYLHNNGLGPQAGAKIARALQELAVNKKA----KNAPPL 161
Query: 517 RYLILANNGLE-------GEMPLQLCWLNKLQLVDLSHNNLS 551
R +I N LE + L V + N +
Sbjct: 162 RSIICGRNRLENGSMKEWAKT---FQSHRLLHTVKMVQNGIR 200
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 8e-07
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 55/212 (25%)
Query: 380 NLTKLKRLNLDGNH-FIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438
T+ +++ L G I + TLS A + L +S NNI ++ +LS
Sbjct: 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKISSLS-------- 67
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLS 498
+ +L IL L RN I I + + L+ L +S
Sbjct: 68 -------------GMENLRILSLGRNLIK----------KIENLDAVADTLE--EL-WIS 101
Query: 499 YNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQ-LCWLNKLQLVDLSHNNLSGQIPHC 557
YN++ +++ + +L LR L ++NN + + L L+KL+ + L+ N L
Sbjct: 102 YNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159
Query: 558 LYNISFNYREDNHDLFDQDPQILYQLPQLQIL 589
N + YR +++ +LP L+ L
Sbjct: 160 --NATSEYR----------IEVVKRLPNLKKL 179
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-06
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 17/111 (15%)
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLS---GSLPWCLANLTYLRLLDV 164
+ + L +D L L + + + NN+ L+ + LR+L +
Sbjct: 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSL 77
Query: 165 SFNQLT--ENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD 213
N + EN+ + +EELW+S N QI+ SL L+
Sbjct: 78 GRNLIKKIENLDA----VADTLEELWISYN--QIA-SLSGIEKLVNLRVLY 121
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 64 SLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSEL--MASLKYLSLSNSYLN 121
L +E +D ++ K ++ + +N+ ++S L M +L+ LSL + +
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALS-----TNNIEKISSLSGMENLRILSLGRNLI- 82
Query: 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNL 181
++ L+E+ I N ++ SL + L LR+L +S N++T L L
Sbjct: 83 -KKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139
Query: 182 TYIEELWLSNN 192
+E+L L+ N
Sbjct: 140 DKLEDLLLAGN 150
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 68 SFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQ 127
++ L+L + +D C + ++ +L++LSL N L +
Sbjct: 9 DMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVS- 65
Query: 128 GLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187
L +L L+++ + N + G L L L L++S N+L + + PL L ++ L
Sbjct: 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125
Query: 188 WLSNN 192
L N
Sbjct: 126 DLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 34/145 (23%)
Query: 446 IPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSN 505
I + +LE L L + S+ + ++++ +LS NR+
Sbjct: 41 IEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKL-------------ELSENRIFGG 86
Query: 506 IPDWMNRLPQLRYLILANNGLEGEMPLQ-LCWLNKLQLVDLSHNNLSGQIPHCLYNISFN 564
+ +LP L +L L+ N L+ L+ L L L+ +DL + N +
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC------EVTNLN---D 137
Query: 565 YREDNHDLFDQDPQILYQLPQLQIL 589
YRE + LPQL L
Sbjct: 138 YRE----------SVFKLLPQLTYL 152
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFN 167
A+++ L L N N ++ E V L+ +++ L S+ L L L+ L++S N
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSEN 81
Query: 168 QLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLK 210
++ L + L LS N + +LEP LK
Sbjct: 82 RIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 380 NLTKLKRLNLDGNHF-IGDIPKTLSNCSALQGLYISDNNIS--GNIPTRLGNLSFLDAIM 436
+ +K L LD + G + L+ L + ++ N+P +L L L+
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP-KLNKLKKLE--- 70
Query: 437 MPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
+ +NR+ G + + +L L+LS N I
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 75 LDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVY 134
L+L +++ +D + +++ L++LS N L T + L +L
Sbjct: 9 LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIA-NLPKLNK 65
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNN 192
L+++ + N +SG L L L++S N++ + + PL L ++ L L N
Sbjct: 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 9e-04
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFN 167
+ +K L L NS N L+ E L+ ++ L+ S+ L L L+ L++S N
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDN 74
Query: 168 QLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD 213
+++ + L LS N + ++EP LK D
Sbjct: 75 RVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 40/140 (28%), Positives = 54/140 (38%), Gaps = 12/140 (8%)
Query: 409 QGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG 468
+ + N I P L I + NN++ P AF LR L L L N I+
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93
Query: 469 SLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEG 528
LP S F L LQ LL L+ N++N D L L L L +N L+
Sbjct: 94 ELP--KSLFE----GLFS--LQ--LL-LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 529 EMPLQLCWLNKLQLVDLSHN 548
L +Q + L+ N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 20/123 (16%)
Query: 301 HCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFY- 359
+K LR +D+SNN++ + + + L +L L + N + P F
Sbjct: 53 SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-----TEL----PKSLFEG 102
Query: 360 ---LEYLVLSNNSLQG---QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYI 413
L+ L+L+ N + F L L L+L N T S A+Q +++
Sbjct: 103 LFSLQLLLLNANKINCLRVDAFQD---LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159
Query: 414 SDN 416
+ N
Sbjct: 160 AQN 162
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 6e-06
Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 17/261 (6%)
Query: 206 HSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHL 265
L +++ ++ S S + F F ++++DLS+
Sbjct: 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-----VQHMDLSNS 103
Query: 266 NLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSN-NKLQGHIPIEI 324
+ + +L + KL+ LSL + L P + + NL L++S + +
Sbjct: 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163
Query: 325 GEVLPNLVVLNVA--TNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQ---GQLFSKEF 379
L LN++ + + + + + L LS L +
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAH----VSETITQLNLSGYRKNLQKSDLSTLVR 219
Query: 380 NLTKLKRLNLDGNHFIGDIP-KTLSNCSALQGLYISD-NNISGNIPTRLGNLSFLDAIMM 437
L L+L + + + + + LQ L +S +I LG + L + +
Sbjct: 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279
Query: 438 PNNRLEGPIPSAFCQLRHLEI 458
+G + L HL+I
Sbjct: 280 FGIVPDGTLQLLKEALPHLQI 300
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 23/170 (13%)
Query: 64 SLFTSFQQLELLDLS-----------ILNFKNLEYFNMDFCTAFSNSFLQ-MSELMASLK 111
+ + +L+ L L + NL N+ C+ FS LQ + + L
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171
Query: 112 YLSLSNSYLNGTILDQGLCELV-----YLQEVNID--RNNLS-GSLPWCLANLTYLRLLD 163
L+LS + ++ + V + ++N+ R NL L + L LD
Sbjct: 172 ELNLSWCFD---FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD 213
+S + + +N L Y++ L LS + I +L LK
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 58/399 (14%), Positives = 110/399 (27%), Gaps = 85/399 (21%)
Query: 153 LANLTYLRLLDVSFNQLTEN----ISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSK 208
+ + LD+S N L + + + L LS N S
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS--------- 68
Query: 209 LKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLT 268
++ + +++T L+ L + + +DL + +
Sbjct: 69 -----DELVQILAAIPANVT-SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122
Query: 269 ----REFPNWLLEKNKKLKRLSLVN--ISLFGPFPL---PIHCHKNLRVLDVSNNKLQGH 319
EF + L+L + + L N+ L++ N L
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182
Query: 320 IPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQ---GQLFS 376
E+ + L SIP+S + L LS N L +
Sbjct: 183 NCAELAKFLA--------------SIPAS-----------VTSLDLSANLLGLKSYAELA 217
Query: 377 KEF--NLTKLKRLNLDGNHFIGD-----IPKTLSNCSALQGLYISDNNISGNIPTRLGNL 429
F + LNL N + + + LQ +Y+ + + + L
Sbjct: 218 YIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGS-LPSCSSPFNIRRVHLSKNM 488
+AF ++ + ++D + I S S+
Sbjct: 277 G-----------------AAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPS 319
Query: 489 LQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLE 527
L L ++ N + +N +LR I L
Sbjct: 320 LLNQCLIFAQKHQTNI---EDLNIPDELRESIQTCKPLL 355
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 54/354 (15%), Positives = 106/354 (29%), Gaps = 86/354 (24%)
Query: 359 YLEYLVLSNNSLQ---GQLFSK--EFNLTKLKRLNLDGNHFIGD-----IPKTLSNC-SA 407
+ L LS NSL + + LNL GN + + KTL+
Sbjct: 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFT 110
Query: 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNI- 466
+ L + N+ S + F A + L+L N++
Sbjct: 111 ITVLDLGWNDFSSK-----SSSEFKQAFSNLP--------------ASITSLNLRGNDLG 151
Query: 467 -------SGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYL 519
L + + N+ ++L N L +L+ + + L
Sbjct: 152 IKSSDELIQILAAIPA--NVNSLNLRGNNLASKNCAELAKFLASIP--------ASVTSL 201
Query: 520 ILANNGLEGEMPLQLCWL-----NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFD 574
L+ N L + +L ++ N + ++L N L G L N+
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP---SLENLK------------ 246
Query: 575 QDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP-LHSMSGLDLSCNKLIGEI 633
+ L LQ +Y +Y + N + +Q P + + +D + ++
Sbjct: 247 ---LLKDSLKHLQTVYLDY---DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300
Query: 634 PLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQ----------VESLDLSYNNL 677
+ I L R + +L + + + + + L
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 26/146 (17%)
Query: 299 PIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCF 358
P H + L ++NN+ I + LP L +N + N I G F
Sbjct: 27 PEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--------GAF 77
Query: 359 Y----LEYLVLSNN---SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK-TLSNCSALQG 410
+ ++L++N ++Q ++F L LK L L N I + + S+++
Sbjct: 78 EGASGVNEILLTSNRLENVQHKMFKG---LESLKTLMLRSNR-ITCVGNDSFIGLSSVRL 133
Query: 411 LYISDNNISGNIP----TRLGNLSFL 432
L + DN I+ + L +LS L
Sbjct: 134 LSLYDNQIT-TVAPGAFDTLHSLSTL 158
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 13/141 (9%)
Query: 409 QGLYISDNNISGNIPT-RLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
L +++N + T L L I NN++ AF + + L+ N +
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 468 GSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLE 527
++ F L L+ L L NR+ D L +R L L +N +
Sbjct: 95 -NVQ--HKMFK----GLES--LK--TL-MLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142
Query: 528 GEMPLQLCWLNKLQLVDLSHN 548
P L+ L ++L N
Sbjct: 143 TVAPGAFDTLHSLSTLNLLAN 163
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 17/155 (10%)
Query: 409 QGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG 468
+ L + ++ L+ L + + N+L+ F L L L L+ N ++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 469 SLPSC--SSPFNIRRVHLSKNMLQGPLLG-----------DLSYNRLNSNIPDWM-NRLP 514
SLP + +++L N L+ G L+ N+L S IP ++L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLT 155
Query: 515 QLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549
L+ L L+ N L+ L KLQ + L N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 18/167 (10%)
Query: 361 EYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS- 419
E L L + L + LTKL LNLD N + + L L +++N ++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 420 --GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477
+ L L L + N+L+ F +L L+ L L+ N + S+P + F
Sbjct: 98 LPLGVFDHLTQLDKLY---LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP--AGAF 151
Query: 478 NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN 524
+ L LS N+L S +RL +L+ + L N
Sbjct: 152 ---------DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 46/167 (27%), Positives = 65/167 (38%), Gaps = 24/167 (14%)
Query: 283 KRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
++L L + L L L++ N+LQ + + + L L L +A N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96
Query: 343 GSIPSSFGNTWPWGCFY----LEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGD 397
S+P G F L+ L L N L+ L S F LTKLK L L+ N +
Sbjct: 97 -SLPL--------GVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQ-LQS 145
Query: 398 IPK----TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440
IP L+N LQ L +S N + L L I + N
Sbjct: 146 IPAGAFDKLTN---LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 622 LDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681
L L N+ +P ++ + ++LS+N ++ S +FS+M Q+ +L LSYN L I
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93
Query: 682 PP----RLIELNALAVF-----SV---AFNNLS 702
PP L L L++ V AFN+LS
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 3e-04
Identities = 25/192 (13%), Positives = 54/192 (28%), Gaps = 44/192 (22%)
Query: 280 KKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEV-LPNLVVLNVAT 338
+ L+ + I + NL+ L++ + L + +I LPNL L +
Sbjct: 169 DAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228
Query: 339 NAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDI 398
+ P + S + LK L + +
Sbjct: 229 GVEDYGFDGDMNVFRP---------LFSKDRF-----------PNLKWLGIVDAEEQNVV 268
Query: 399 PKTLSNC---SALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH 455
+ L+ + IS ++ L +++H
Sbjct: 269 VEMFLESDILPQLETMDISAGVLTDEGARLL--------------------LDHVDKIKH 308
Query: 456 LEILDLSRNNIS 467
L+ +++ N +S
Sbjct: 309 LKFINMKYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 3e-04
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 7/113 (6%)
Query: 582 QLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGE-- 639
LP L+ L Y + + ++ L + + + E
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276
Query: 640 -LSRIHTLNLSHNNLTGESPVTF----SHMKQVESLDLSYNNLNGKIPPRLIE 687
L ++ T+++S LT E +K ++ +++ YN L+ ++ L +
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 740 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.98 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.91 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.91 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.91 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.87 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.85 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.84 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.83 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.83 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.83 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.83 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.83 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.83 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.82 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.81 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.77 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.76 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.76 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.74 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.74 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.73 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.73 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.73 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.73 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.73 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.7 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.7 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.7 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.69 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.68 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.68 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.67 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.65 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.65 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.64 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.63 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.62 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.6 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.58 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.58 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.58 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.56 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.56 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.55 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.54 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.54 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.54 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.54 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.54 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.51 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.5 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.44 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.44 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.39 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.36 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.32 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.32 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.3 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.26 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.15 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.14 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.12 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.02 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.01 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.8 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.51 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.4 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 98.38 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.35 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.31 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.18 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.06 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.87 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.33 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.28 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.89 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-76 Score=683.93 Aligned_cols=694 Identities=29% Similarity=0.396 Sum_probs=581.4
Q ss_pred CCCcHHHHHHHHHHhhc---------CC-CCCCccccceEecCCCCceEEEECCCCCCCCCCCcccccccccccccccee
Q 045323 6 EGCLEQEGYALLKLKHD---------FF-NNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELL 75 (740)
Q Consensus 6 ~~~~~~~~~~~~~~~~~---------~~-~~~~c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~L 75 (740)
....+.|+.|+++||++ |. +.+||.|.||.|+ +++|+.+||++..+. |....-++.|.+++.|+.+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~--g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLN--VGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCC--EEHHHHHHHTTTCTTCCEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcC--CccCccChhHhccCccccc
Confidence 44578899999999975 86 7899999999998 689999999998772 2111023567888999999
Q ss_pred eCCC----------CCCCCCcEEeCCCCCCcCcccch--hcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCC
Q 045323 76 DLSI----------LNFKNLEYFNMDFCTAFSNSFLQ--MSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRN 143 (740)
Q Consensus 76 dls~----------~~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n 143 (740)
+++. .++++|++|+|+ .+.+.+.+|. .++.+++|++|++++|.+.+.++...+.++++|++|++++|
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLS-RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECC-SSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred CCcCCCcCCCchhhccCCCCCEEECC-CCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 8876 467899999999 8888888888 89999999999999999987777644589999999999999
Q ss_pred ccccccccc---CcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCcccc
Q 045323 144 NLSGSLPWC---LANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEI 220 (740)
Q Consensus 144 ~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 220 (740)
.+++..+.. +.++++|++|++++|.+++.++ +..+++|++|++++|.+.+.++. +.++++|++|+++.....
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCC
Confidence 999888877 8899999999999999987443 48899999999999999865554 889999999999886544
Q ss_pred ccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCC
Q 045323 221 ETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPI 300 (740)
Q Consensus 221 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 300 (740)
......+..+.+|+.|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+.+..|..+
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 333445667789999999999988777765 789999999999999988888775556999999999999988888999
Q ss_pred CCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccC
Q 045323 301 HCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFN 380 (740)
Q Consensus 301 ~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 380 (740)
..+++|++|++++|.+++.+|......+++|++|++++|.+.+.+|..+..... +|++|++++|.+.+..+..+..
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~----~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA----SLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT----TCSEEECCSSEEEEECCTTTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc----CCcEEEccCCCcCCCcChhhhh
Confidence 999999999999999998899875555899999999999999888888776542 7999999999998877777665
Q ss_pred --CCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCE
Q 045323 381 --LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEI 458 (740)
Q Consensus 381 --l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 458 (740)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 788999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EECCCCcCcccCCCCCC-CCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCC
Q 045323 459 LDLSRNNISGSLPSCSS-PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWL 537 (740)
Q Consensus 459 L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 537 (740)
|++++|.+.+..|.... +++|+.|++++|+++ +.+|.+++.+++|++|++++|++.+.+|..+..+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-------------GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccC-------------CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 99999999987776544 899999999988776 4678889999999999999999999999999999
Q ss_pred CCCCEEEccCCcCcCCCCccccccccccccCCC------------------------CccCCCchhhccchhhHHhhhcc
Q 045323 538 NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNH------------------------DLFDQDPQILYQLPQLQILYTNY 593 (740)
Q Consensus 538 ~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~------------------------~~~~~~~~~~~~l~~L~~l~~~~ 593 (740)
++|+.|++++|++.+.+|..+............ ......+..+..++.+.......
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 999999999999999999887664311100000 00011111111222111111110
Q ss_pred cccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCC
Q 045323 594 HNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLS 673 (740)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 673 (740)
+.. .......+..+++|+.||+++|+++|.+|..|..+++|+.|+|++|++++.+|..|+.+++|++|||+
T Consensus 618 ~~~---------~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 618 RVY---------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp CEE---------EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cee---------cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 000 00112245678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCCCCCCCCCC
Q 045323 674 YNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNENG 739 (740)
Q Consensus 674 ~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~~~~~~~~ 739 (740)
+|++++.+|+.+..+++|+.|++++|+++|.+|.. +.+.++...++.|||++|+.|+. +|...+
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999999999999999999999999986 78899999999999999999987 896554
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-63 Score=573.64 Aligned_cols=614 Identities=26% Similarity=0.329 Sum_probs=338.2
Q ss_pred cchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccc--cCcCCCCCCEEEcCCCCCCCCCCccc
Q 045323 100 FLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPW--CLANLTYLRLLDVSFNQLTENISSSP 177 (740)
Q Consensus 100 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~i~~~~ 177 (740)
++..+..+++|+.++++.+.+. .++. .|+++++|++|+|++|.+++.+|. .++++++|++|++++|.+.+.++...
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 146 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 146 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCS
T ss_pred cChhHhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHH
Confidence 4444444444444444444432 2222 344445555555555544444444 44445555555555554444333322
Q ss_pred cCCCCCCCEEeccCCcccccCCccc--cccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCC
Q 045323 178 LMNLTYIEELWLSNNHFQISISLEP--FFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQH 255 (740)
Q Consensus 178 l~~l~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 255 (740)
+.++++|++|++++|.+.+..+... +.++++|+.|+++....... .....+.+|++|++++|.+.+.+|. ++.++
T Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~ 223 (768)
T 3rgz_A 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223 (768)
T ss_dssp CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC--CBCTTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc--CCcccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence 2444455555555544442222111 34444444444444322111 1113333455555555544444443 44445
Q ss_pred CCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEe
Q 045323 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLN 335 (740)
Q Consensus 256 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~ 335 (740)
+|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|..++..+++|++|+
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 55555555555444444332 34455555555555444333322 4444555555555544444444443334455555
Q ss_pred ccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCccc-ccCCCCCCeeecCCCcceecCCcCCCCCC-CCceEeC
Q 045323 336 VATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSK-EFNLTKLKRLNLDGNHFIGDIPKTLSNCS-ALQGLYI 413 (740)
Q Consensus 336 l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l 413 (740)
+++|.+++..|..+..+. +|++|++++|.+.+..+.. +..+++|++|++++|.+.+.+|..+..++ +|++|++
T Consensus 301 Ls~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCS-----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp CCSSEEEECCCGGGGGCT-----TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CcCCcCCCccchHHhcCC-----CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 555554444444444333 4555555555444333322 44444555555555544444444444443 4555555
Q ss_pred CCcccccCCCcCCCC--CCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCC-CCcccEEEcCCCccc
Q 045323 414 SDNNISGNIPTRLGN--LSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSS-PFNIRRVHLSKNMLQ 490 (740)
Q Consensus 414 ~~n~i~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~i~ 490 (740)
++|.+.+..+..+.. +++|++|++++|.+++..|..+.++++|++|++++|.+.+..|.... +++|+.|++++|.++
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 555444444444333 44455555555544444444444445555555555544443333222 444555555444444
Q ss_pred CcCc-----------cccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccc
Q 045323 491 GPLL-----------GDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLY 559 (740)
Q Consensus 491 ~~~~-----------~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 559 (740)
+..+ +++++|++++.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+.+|..+.
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 3221 34444455567788888899999999999999988888899999999999999999888887665
Q ss_pred ccc---cccccCCCCccCCCchhhccchhhHHhhhcc-cccceeeeee------------eccccceeecccCCCccEEE
Q 045323 560 NIS---FNYREDNHDLFDQDPQILYQLPQLQILYTNY-HNHKYLTNFT------------TKQRLYTYEVQPLHSMSGLD 623 (740)
Q Consensus 560 ~l~---~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~~~L~~L~ 623 (740)
.+. ...+..+.... ..+..+..+..+..+.... .......... .........+..++.+..++
T Consensus 536 ~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GCTTCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCEEECCCCccCC-cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 543 11111111111 1111111111111110000 0000000000 00000111223345566677
Q ss_pred cccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCccccc
Q 045323 624 LSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSG 703 (740)
Q Consensus 624 ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 703 (740)
++.+.+.|.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|||++|+++|
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCccccccccCCCCC
Q 045323 704 KTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 704 ~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
.+|..++.+++|+++++++|+..-
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cCChHHhCCCCCCEEECcCCcccc
Confidence 999999999999999999998753
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-58 Score=522.95 Aligned_cols=572 Identities=24% Similarity=0.238 Sum_probs=413.6
Q ss_pred ceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCC
Q 045323 42 KVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLN 121 (740)
Q Consensus 42 ~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~ 121 (740)
+++.+|+++|.+ ..++...|.++++|++||++++++. +..|..++.+++|++|++++|.++
T Consensus 26 ~l~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 26 NITVLNLTHNQL-----RRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp TCSEEECCSSCC-----CCCCGGGGGGGTTCSEEECCSSCCC--------------CCCTTHHHHCTTCCEEECCSSCCC
T ss_pred CCcEEECCCCCC-----CCcCHHHHhCCCcCcEEECCCCccC--------------ccCHHHHhcccCcCEEECCCCccC
Confidence 455555555555 2344445555555555555544332 222344555666666666666655
Q ss_pred CccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCcc
Q 045323 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLE 201 (740)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 201 (740)
.++...|.++++|++|++++|.+++..+.+|+++++|++|++++|.+++..+. .+.++++|++|++++|.+++ ++..
T Consensus 87 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~ 163 (680)
T 1ziw_A 87 -QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQA-LKSE 163 (680)
T ss_dssp -CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCC-BCHH
T ss_pred -ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccc-cCHH
Confidence 44444466666666666666666555555566666666666666665553333 45566666666666665542 1111
Q ss_pred ccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHh--cC
Q 045323 202 PFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLE--KN 279 (740)
Q Consensus 202 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--~~ 279 (740)
.+ ......+|+.|++++|.+.+..+..+..+++|+.|+++++.+.......+.. ..
T Consensus 164 ~~----------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 221 (680)
T 1ziw_A 164 EL----------------------DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221 (680)
T ss_dssp HH----------------------GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred Hh----------------------hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh
Confidence 11 1122347888888888888888888888889999999888765332222211 34
Q ss_pred CCCCEEEccCCcccccCCCCCCCCCC--CCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCcccc
Q 045323 280 KKLKRLSLVNISLFGPFPLPIHCHKN--LRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357 (740)
Q Consensus 280 ~~L~~L~L~~~~~~~~~~~~l~~~~~--L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 357 (740)
++|++|++++|.+.+..+..+..++. |++|++++|.+++..|..+.. +++|++|++++|.+.+..+..+..+.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~---- 296 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLF---- 296 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCT----
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCC----
Confidence 78899999998888777777777654 999999999888555554444 78899999999988877777777655
Q ss_pred CCccEEEccCCCCCC-----cCc----ccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCccccc--CCCcCC
Q 045323 358 FYLEYLVLSNNSLQG-----QLF----SKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG--NIPTRL 426 (740)
Q Consensus 358 ~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~--~~~~~~ 426 (740)
+|++|++++|...+ ..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. .....|
T Consensus 297 -~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 297 -NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp -TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred -CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhh
Confidence 79999998765432 112 256678889999999998888878888888999999998886432 222334
Q ss_pred CC--CCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCC--CCCCCCcccEEEcCCCcccCcCccccCCCcC
Q 045323 427 GN--LSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP--SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRL 502 (740)
Q Consensus 427 ~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 502 (740)
.. .++|+.|++++|.+++..+..|..+++|++|++++|.+.+.++ .+..+++|+.|++++|++.+
T Consensus 376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------- 444 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ----------- 444 (680)
T ss_dssp GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-----------
T ss_pred cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce-----------
Confidence 33 2578999999998888888888889999999999998876554 34558889999998887753
Q ss_pred CCCCCcccCCCCCCcEEecccCccc--ccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhh
Q 045323 503 NSNIPDWMNRLPQLRYLILANNGLE--GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQIL 580 (740)
Q Consensus 503 ~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 580 (740)
..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..|..+.+
T Consensus 445 --~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-------------------- 502 (680)
T 1ziw_A 445 --LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-------------------- 502 (680)
T ss_dssp --CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred --eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc--------------------
Confidence 34556778889999999998876 456778888999999999999887555444433
Q ss_pred ccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccCh--------hhhhcCCCCcEEECcCCc
Q 045323 581 YQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIP--------LQIGELSRIHTLNLSHNN 652 (740)
Q Consensus 581 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--------~~l~~l~~L~~L~L~~N~ 652 (740)
+++|+.|++++|++.+..+ ..|.++++|++|+|++|+
T Consensus 503 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 503 -----------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp -----------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred -----------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 3489999999999875422 237889999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCccc-CCCCccccccccCCCCCCcCC
Q 045323 653 LTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVA-QFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 653 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~l~~l~l~~Np~~c~~~l 731 (740)
++...+..|+.+++|+.|+|++|++++..+..|..+++|+.|++++|++++.++..++ .+++|+.+++++|||.|+|++
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9977777899999999999999999977777889999999999999999999988777 789999999999999999986
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=471.91 Aligned_cols=518 Identities=19% Similarity=0.199 Sum_probs=413.6
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
+++++|++++|.++ .+++..|.++++|++|++++|.+++..|.+|+++++|++|++++|++++..+. .+.++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEE
T ss_pred CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEe
Confidence 47999999999998 56555899999999999999999988899999999999999999999875555 89999999999
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
++++|.+++ ++...+ ..+.+|++|++++|.+.+.....+..+++|++|++++|.+
T Consensus 111 ~L~~n~i~~-l~~~~~------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 111 FFIQTGISS-IDFIPL------------------------HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp ECTTSCCSC-GGGSCC------------------------TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred eccccCccc-CCcchh------------------------ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 999999873 222223 3344777788888877774434444588899999999888
Q ss_pred CCCCChhHHhcCCCCC--EEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccc--
Q 045323 268 TREFPNWLLEKNKKLK--RLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG-- 343 (740)
Q Consensus 268 ~~~~~~~~~~~~~~L~--~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~-- 343 (740)
.+..+.. +..+++|+ +|++++|.+....+..+.. .+|+.|++++|.. ++..+.. +.++....+....+.+
T Consensus 166 ~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~-l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 166 HYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKG-LKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp CEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHH-TTTCEEEEEECCCCTTSC
T ss_pred cccChhh-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhh-ccccchhheechhhcccc
Confidence 8544444 47888888 8888888887766655544 5788999988862 2333222 4444333332222211
Q ss_pred ---cCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCccccc
Q 045323 344 ---SIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG 420 (740)
Q Consensus 344 ---~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 420 (740)
..+..+.... ..++++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+
T Consensus 240 ~~~i~~~~~~~l~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 240 DEDISPAVFEGLC---EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp CCCCCGGGGGGGG---GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB
T ss_pred ccccChhHhchhh---cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc
Confidence 1111222211 126899999999998877777888999999999999887 667778889999999999999987
Q ss_pred CCCcCCCCCCCCCEEeCCCCcCcCCc-hhhhcCCCCCCEEECCCCcCcccC--C-CCCCCCcccEEEcCCCcccCcCccc
Q 045323 421 NIPTRLGNLSFLDAIMMPNNRLEGPI-PSAFCQLRHLEILDLSRNNISGSL--P-SCSSPFNIRRVHLSKNMLQGPLLGD 496 (740)
Q Consensus 421 ~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~--~-~~~~~~~L~~L~l~~n~i~~~~~~~ 496 (740)
..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. + .+..+++|++|++++|++.+
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~----- 390 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS----- 390 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-----
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-----
Confidence 77788889999999999999887444 445888999999999999988653 3 45558899999999887753
Q ss_pred cCCCcCCCCCCcccCCCCCCcEEecccCcccccCCc-cccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCC
Q 045323 497 LSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL-QLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQ 575 (740)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~ 575 (740)
..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..+..
T Consensus 391 --------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 447 (606)
T 3t6q_A 391 --------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------------- 447 (606)
T ss_dssp --------ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT---------------
T ss_pred --------CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC---------------
Confidence 4466788899999999999999866554 4888999999999999987666654433
Q ss_pred CchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccccc---ChhhhhcCCCCcEEECcCCc
Q 045323 576 DPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE---IPLQIGELSRIHTLNLSHNN 652 (740)
Q Consensus 576 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~~~l~~l~~L~~L~L~~N~ 652 (740)
+++|+.|++++|++.+. .+..+..+++|++|+|++|+
T Consensus 448 ----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 448 ----------------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp ----------------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred ----------------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 34899999999999763 33678999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 653 LTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 653 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
+++..|..|+.+++|++|+|++|++++.+|..+..++.| .|++++|++++.+|+.+..+++|+.+++++|||.|+|++
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999999999999999999 999999999999999899999999999999999999984
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-52 Score=474.12 Aligned_cols=547 Identities=20% Similarity=0.187 Sum_probs=326.4
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
+++++|++++|.+. .++...|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++ ++...+.++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCCCEE
Confidence 56777777777766 4444457777777777777777776666667777777777777777654 554456677777777
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
++++|.+. .++...+.+++ +|++|++++|.+.+..+..++.+++|++|++++|.+
T Consensus 103 ~L~~n~l~-~~~~~~~~~l~------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 103 HLMSNSIQ-KIKNNPFVKQK------------------------NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp ECCSSCCC-CCCSCTTTTCT------------------------TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred ECCCCccC-ccChhHccccC------------------------CCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 77777665 33333333333 444444444544444445555555555555555555
Q ss_pred CCCCChhHH-hcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhh--cCCCCcEEeccCCccccc
Q 045323 268 TREFPNWLL-EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGE--VLPNLVVLNVATNAFNGS 344 (740)
Q Consensus 268 ~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~--~l~~L~~L~l~~n~~~~~ 344 (740)
.+..+..+. ..+++|++|++++|.+....+..+..+++|+.|++.++.+.+.....+.. ..++|+.|++++|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 533333220 12355556666555555555555555555555655555443222111110 124566666666655555
Q ss_pred CCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCccccc----
Q 045323 345 IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG---- 420 (740)
Q Consensus 345 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~---- 420 (740)
.+..+..+. .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+
T Consensus 238 ~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 238 SNTTFLGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp CTTTTGGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred ChhHhhccC---cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 555444332 1236666666666555555555555666666666666555555555556666666665543221
Q ss_pred -CCC----cCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCccc--CCCCC---CCCcccEEEcCCCccc
Q 045323 421 -NIP----TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGS--LPSCS---SPFNIRRVHLSKNMLQ 490 (740)
Q Consensus 421 -~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~---~~~~L~~L~l~~n~i~ 490 (740)
.+| ..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+... ....+ ..++|+.|++++|+++
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 111 2455556666666666666555555556666666666665543211 11111 1235555655555544
Q ss_pred CcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccccCC
Q 045323 491 GPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDN 569 (740)
Q Consensus 491 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~ 569 (740)
+ ..+..+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|++.+..+.
T Consensus 395 ~-------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------- 448 (680)
T 1ziw_A 395 K-------------IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN------------- 448 (680)
T ss_dssp E-------------ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-------------
T ss_pred e-------------EChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh-------------
Confidence 2 233445555555555555555554333 3455555555555555554432222
Q ss_pred CCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECc
Q 045323 570 HDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLS 649 (740)
Q Consensus 570 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~ 649 (740)
.|..+++|+.+.+..+.+... ......+..+++|+.|++++|++.+..+..|..+++|++|+|+
T Consensus 449 ---------~~~~~~~L~~L~l~~n~l~~~-------~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 449 ---------SFALVPSLQRLMLRRVALKNV-------DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512 (680)
T ss_dssp ---------TTTTCTTCCEEECTTSCCBCT-------TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ---------hhhcCcccccchhcccccccc-------ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCC
Confidence 222333444443333222110 0011234566799999999999998888889999999999999
Q ss_pred CCcCcccCC--------ccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccc
Q 045323 650 HNNLTGESP--------VTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYE 721 (740)
Q Consensus 650 ~N~l~~~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~ 721 (740)
+|++++..+ ..|+.+++|+.|+|++|+++...+..|..+++|+.|++++|++++.++..|..+++|+.|+++
T Consensus 513 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp SSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECC
Confidence 999986532 347889999999999999996555679999999999999999999999989999999999999
Q ss_pred cCCCC
Q 045323 722 GNPFL 726 (740)
Q Consensus 722 ~Np~~ 726 (740)
+|...
T Consensus 593 ~N~l~ 597 (680)
T 1ziw_A 593 KNLIT 597 (680)
T ss_dssp TSCCC
T ss_pred CCcCC
Confidence 99754
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-52 Score=468.40 Aligned_cols=515 Identities=19% Similarity=0.157 Sum_probs=406.6
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
++|++|++++|.+. .++...|.++++|++|++++|.+++..|.+|+++++|++|++++|++++..|. .+.++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEE
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEE
Confidence 67888888888887 55555788888888899888888887788888888889998888888774454 78888888888
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCC-CCChhhcCCCCCCEEEcCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~ 266 (740)
++++|.+.+ ++...+. .+.+|++|++++|.+.+ .+|..++++++|++|++++|.
T Consensus 110 ~L~~n~l~~-~~~~~~~------------------------~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 110 VAVETKLAS-LESFPIG------------------------QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ECTTSCCCC-SSSSCCT------------------------TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EccCCcccc-ccccccC------------------------CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 888888762 3322233 33467777777787765 468889999999999999999
Q ss_pred CCCCCChhHHhcCCC----CCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCccc
Q 045323 267 LTREFPNWLLEKNKK----LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~----L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 342 (740)
+.+..+..+ ..+++ +++|++++|.+....+..+... +|+.|++++|.+.+.........++.++.+++..+.+.
T Consensus 165 l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 165 IQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred ceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 986555543 44444 4589999999876666555554 89999999998864444444444888888887654433
Q ss_pred ccC------CCCccCcCccccCCccEEEc-cCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCC
Q 045323 343 GSI------PSSFGNTWPWGCFYLEYLVL-SNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD 415 (740)
Q Consensus 343 ~~~------~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 415 (740)
+.. +..+..+. .-.++.+++ ..+.+.+..+. +..+++|+.|++++|.+.. ++ .+..+++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~l~---~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLC---DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIR 316 (606)
T ss_dssp TSCCCSCCCGGGGTTGG---GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEES
T ss_pred cCCcccccChHHhhhhh---hccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEccc
Confidence 211 11111111 114777777 56677766665 8888999999999998864 44 678889999999999
Q ss_pred cccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCccc---CCCCCCCCcccEEEcCCCcccCc
Q 045323 416 NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGS---LPSCSSPFNIRRVHLSKNMLQGP 492 (740)
Q Consensus 416 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~~L~~L~l~~n~i~~~ 492 (740)
|.+. .+| .+ .+++|++|++++|..... ..+..+++|++|++++|.+.+. ...+..+++|+.|++++|.++
T Consensus 317 n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-- 389 (606)
T 3vq2_A 317 CQLK-QFP-TL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-- 389 (606)
T ss_dssp CCCS-SCC-CC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE--
T ss_pred ccCc-ccc-cC-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc--
Confidence 9994 667 45 899999999999965432 2567899999999999998765 233445889999999999876
Q ss_pred CccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCC
Q 045323 493 LLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHD 571 (740)
Q Consensus 493 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~ 571 (740)
.+|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..
T Consensus 390 ------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 446 (606)
T 3vq2_A 390 ------------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG----------- 446 (606)
T ss_dssp ------------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-----------
T ss_pred ------------cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-----------
Confidence 345678889999999999999987766 57889999999999999988766654443
Q ss_pred ccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccc-cChhhhhcCCCCcEEECcC
Q 045323 572 LFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG-EIPLQIGELSRIHTLNLSH 650 (740)
Q Consensus 572 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~L~~ 650 (740)
+++|+.|++++|++.+ ..|..|..+++|++|+|++
T Consensus 447 --------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 447 --------------------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp --------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred --------------------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 3489999999999987 4788899999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCC-CccccccccCCCCCCc
Q 045323 651 NNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFG-TFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 651 N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~-~l~~l~l~~Np~~c~~ 729 (740)
|++++..|..|+.+++|++|++++|++++.+|..+..+++|+.|++++|+++..++. +..++ +|+++++++|||.|+|
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCC
Confidence 999999999999999999999999999998899999999999999999999965544 78886 6999999999999999
Q ss_pred CCC
Q 045323 730 PLL 732 (740)
Q Consensus 730 ~l~ 732 (740)
++.
T Consensus 562 ~~~ 564 (606)
T 3vq2_A 562 EHQ 564 (606)
T ss_dssp TTH
T ss_pred ccH
Confidence 863
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-51 Score=476.98 Aligned_cols=501 Identities=23% Similarity=0.188 Sum_probs=379.0
Q ss_pred cchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCc-ccc
Q 045323 100 FLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISS-SPL 178 (740)
Q Consensus 100 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~-~~l 178 (740)
.+..+..+++|++|++++|...+.++...|.++++|++|+|++|.+++..|.+|+++++|++|++++|.+++.++. ..+
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 3445566777777777777555566555677777777777777777777777777777777777777777664443 136
Q ss_pred CCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCC
Q 045323 179 MNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLE 258 (740)
Q Consensus 179 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 258 (740)
.++++|++|++++|.+.+.. .+..++++++|+
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~------------------------------------------------~~~~~~~L~~L~ 151 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLY------------------------------------------------LHPSFGKLNSLK 151 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCC------------------------------------------------CCGGGGTCSSCC
T ss_pred cccCCCCEEECCCCcccccc------------------------------------------------cchhHhhCCCCC
Confidence 67777777777777665221 123455666666
Q ss_pred EEEcCCCCCCCCCChhHHhcC--CCCCEEEccCCcccccCCCCCCCCCC------CCEEEccCCcccccCchhhhhcC--
Q 045323 259 YVDLSHLNLTREFPNWLLEKN--KKLKRLSLVNISLFGPFPLPIHCHKN------LRVLDVSNNKLQGHIPIEIGEVL-- 328 (740)
Q Consensus 259 ~L~L~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~l~~~~~------L~~L~l~~~~l~~~~~~~~~~~l-- 328 (740)
+|++++|.+.+..+..+ ..+ ++|+.|++++|.+....+..+..+++ |+.|++++|.+++..+..+...+
T Consensus 152 ~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp EEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred EEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 66666666665555443 333 66666666666665555554444443 88888888877766666655432
Q ss_pred CCCcEEeccCCcc---------cccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCC
Q 045323 329 PNLVVLNVATNAF---------NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP 399 (740)
Q Consensus 329 ~~L~~L~l~~n~~---------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 399 (740)
..++.+.+..+.+ .+.....+... .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l---~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL---ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT---TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred ccccceecccccccccccccccCCCChhhhhcc---ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 3566777663322 22222223322 23589999999999998888888999999999999999998888
Q ss_pred cCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcc
Q 045323 400 KTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479 (740)
Q Consensus 400 ~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 479 (740)
..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|.++++|++|++++|.+++.. .+++|
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L 383 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSI 383 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSC
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCc
Confidence 88999999999999999999888889999999999999999999888888999999999999999987432 27789
Q ss_pred cEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccc
Q 045323 480 RRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCL 558 (740)
Q Consensus 480 ~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~ 558 (740)
+.+++++|+++ .+|.. ..+++.|++++|++.+... ..+..+++|+.|++++|++.+..+...
T Consensus 384 ~~L~l~~N~l~--------------~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 384 PDIFLSGNKLV--------------TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp SEEEEESCCCC--------------CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred chhccCCCCcc--------------ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 99999999876 33332 4679999999999985432 345689999999999999874433210
Q ss_pred cccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccc-----ccC
Q 045323 559 YNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI-----GEI 633 (740)
Q Consensus 559 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-----~~~ 633 (740)
...+++|+.|++++|.+. +..
T Consensus 447 ------------------------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 447 ------------------------------------------------------PSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp ------------------------------------------------------SCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred ------------------------------------------------------cccCCccccccCCCCccccccccccc
Confidence 122458999999999986 344
Q ss_pred hhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCC
Q 045323 634 PLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFG 713 (740)
Q Consensus 634 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~ 713 (740)
+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|+.+ .
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~ 547 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---V 547 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---S
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---C
Confidence 56788999999999999999999999999999999999999999977777666 899999999999999999754 5
Q ss_pred CccccccccCCCCCCcCCC
Q 045323 714 TFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 714 ~l~~l~l~~Np~~c~~~l~ 732 (740)
+|+.+++++|||.|+|++.
T Consensus 548 ~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 548 SLSVLDITHNKFICECELS 566 (844)
T ss_dssp SCCEEEEEEECCCCSSSCC
T ss_pred CcCEEEecCCCcccccccH
Confidence 8899999999999999864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=454.99 Aligned_cols=519 Identities=20% Similarity=0.168 Sum_probs=417.6
Q ss_pred CCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEE
Q 045323 83 KNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLL 162 (740)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 162 (740)
+++++|+++ .+.+.+..+..+..+++|++|++++|.+. .+.+..|.++++|++|++++|.+++..|.+|+++++|++|
T Consensus 33 ~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEcc-CCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 456777777 66677666788899999999999999998 4544589999999999999999998889999999999999
Q ss_pred EcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCC
Q 045323 163 DVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHG 242 (740)
Q Consensus 163 ~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 242 (740)
++++|++++ ++...+.++++|++|++++|.+.+ ++.. .+.++.+|+.|++++|.
T Consensus 111 ~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~-~~~~------------------------~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 111 FFIQTGISS-IDFIPLHNQKTLESLYLGSNHISS-IKLP------------------------KGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp ECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCC-CCCC------------------------TTCCCTTCCEEECCSSC
T ss_pred eccccCccc-CCcchhccCCcccEEECCCCcccc-cCcc------------------------cccCCcccCEEEcccCc
Confidence 999999987 433378999999999999999873 2211 22234578888888888
Q ss_pred CCCCCChhhcCCCCCC--EEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCC--CEEEccCC---c
Q 045323 243 DSGIFPKFLYHQHDLE--YVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNL--RVLDVSNN---K 315 (740)
Q Consensus 243 ~~~~~~~~l~~l~~L~--~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L--~~L~l~~~---~ 315 (740)
+.+..+..++.+++|+ .|++++|.+.+..|..+ ...+|++|+++++.... ..+..+.++ +.+.+... .
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~~---~~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLL---VIFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCHH---HHHHHTTTCEEEEEECCCCTTSC
T ss_pred ccccChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhHH---HHhhhccccchhheechhhcccc
Confidence 8877788888888888 88999998886655543 45688899998876322 122222222 23333221 1
Q ss_pred ccccCchhhhhcCC--CCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCc
Q 045323 316 LQGHIPIEIGEVLP--NLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNH 393 (740)
Q Consensus 316 l~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 393 (740)
.. .++...+..+. +|+.+++++|.+.+..+..+..+. +|++|++++|.++ ..|..+..+++|++|++++|.
T Consensus 240 ~~-~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 240 DE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS-----GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CC-CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT-----TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred cc-ccChhHhchhhcCceeEEEeecCccCccCHHHhcccc-----CCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence 11 22222222222 789999999999877777677655 8999999999998 566778889999999999999
Q ss_pred ceecCCcCCCCCCCCceEeCCCcccccCCC-cCCCCCCCCCEEeCCCCcCcCCc--hhhhcCCCCCCEEECCCCcCcccC
Q 045323 394 FIGDIPKTLSNCSALQGLYISDNNISGNIP-TRLGNLSFLDAIMMPNNRLEGPI--PSAFCQLRHLEILDLSRNNISGSL 470 (740)
Q Consensus 394 ~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~ 470 (740)
+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC
Confidence 988878888999999999999998875554 45889999999999999998665 678899999999999999998776
Q ss_pred CCCC-CCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCc
Q 045323 471 PSCS-SPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549 (740)
Q Consensus 471 ~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 549 (740)
+... .+++|+.|++++|++++. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVK------------DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECC------------TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred HHHhcCCccCCeEECCCCcCCCc------------ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 6554 489999999999988642 123457889999999999999998888889999999999999999
Q ss_pred CcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcc
Q 045323 550 LSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL 629 (740)
Q Consensus 550 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 629 (740)
+.+..+.. ...+..+++|+.|++++|++
T Consensus 461 l~~~~~~~----------------------------------------------------~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 461 FPKGNIQK----------------------------------------------------TNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp CGGGEECS----------------------------------------------------SCGGGGCTTCCEEECTTSCC
T ss_pred CCcccccc----------------------------------------------------chhhccCCCccEEECCCCcc
Confidence 86421110 01133456999999999999
Q ss_pred cccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCC
Q 045323 630 IGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 630 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 706 (740)
.+..|..|..+++|++|+|++|++++..|..|..+++| .|++++|++++.+|..+..+++|+.|++++|++.+.-+
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 98899999999999999999999999999999999999 99999999998888899999999999999999987544
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=440.96 Aligned_cols=502 Identities=19% Similarity=0.136 Sum_probs=337.5
Q ss_pred chhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCC
Q 045323 101 LQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180 (740)
Q Consensus 101 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~ 180 (740)
+..+..+++|++|++++|.++ .+++..|.++++|++|++++|.+++..|.+|+++++|++|++++|++++ ++...+.+
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~ 126 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQ 126 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTT
T ss_pred hhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc-ccccccCC
Confidence 344555667777777776665 3433356666777777777776666666666777777777777776655 33225666
Q ss_pred CCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCcc----ccEEEecCCCCCCCCChhhcCCCC
Q 045323 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQ----LTSISLFGHGDSGIFPKFLYHQHD 256 (740)
Q Consensus 181 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~l~~l~~ 256 (740)
+++|++|++++|.+.+...+..+.++++|+.|+++...........+....+ ++.+++++|.+.+..+..+... +
T Consensus 127 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~ 205 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-K 205 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-e
Confidence 6777777777766653111233444443333333322111111111111111 2245555555444333333222 4
Q ss_pred CCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCC--CCcEE
Q 045323 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLP--NLVVL 334 (740)
Q Consensus 257 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~--~L~~L 334 (740)
|++|++++|.+.+......+..++.++.+++....+... . .+. .++......+. .++.+
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--------~----------~l~-~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE--------R----------NLE-IFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS--------C----------CCS-CCCGGGGTTGGGSEEEEE
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccC--------C----------ccc-ccChHHhhhhhhccHhhe
Confidence 555555555444222222234444444444432221100 0 000 11111111111 45566
Q ss_pred ec-cCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeC
Q 045323 335 NV-ATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYI 413 (740)
Q Consensus 335 ~l-~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 413 (740)
++ ..+.+.+..+. +..+ ++|++|++++|.+.. .+ .+..+++|++|++++|.+ +.+| .+ .+++|++|++
T Consensus 267 ~l~~~~~~~~~~~~-~~~l-----~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l 335 (606)
T 3vq2_A 267 RLTYTNDFSDDIVK-FHCL-----ANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTL 335 (606)
T ss_dssp EECCCTTCCGGGGS-CGGG-----TTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEE
T ss_pred eccccccccccccc-cccC-----CCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeec
Confidence 66 55666655555 4443 378999999888864 33 677888899999999988 5666 44 8889999999
Q ss_pred CCcccccCCCcCCCCCCCCCEEeCCCCcCcCCc--hhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccC
Q 045323 414 SDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPI--PSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG 491 (740)
Q Consensus 414 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~ 491 (740)
++|...+.. .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+....+..+++|+.|++++|++.+
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES
T ss_pred cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC
Confidence 998655433 5678899999999999887553 778889999999999999988766666678999999999998863
Q ss_pred cCccccCCCcCCCCCC-cccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCC-CCccccccccccccCC
Q 045323 492 PLLGDLSYNRLNSNIP-DWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQ-IPHCLYNISFNYREDN 569 (740)
Q Consensus 492 ~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~~~~~~~ 569 (740)
..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. +|..+.
T Consensus 414 -------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------- 470 (606)
T 3vq2_A 414 -------------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA---------- 470 (606)
T ss_dssp -------------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT----------
T ss_pred -------------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc----------
Confidence 233 5678899999999999999988888899999999999999998753 444333
Q ss_pred CCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECc
Q 045323 570 HDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLS 649 (740)
Q Consensus 570 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~ 649 (740)
.+++|+.|++++|++++..|..|..+++|++|+|+
T Consensus 471 ---------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 471 ---------------------------------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp ---------------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ---------------------------------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 34589999999999998899999999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCC-cCceeeccCcccccCCC
Q 045323 650 HNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELN-ALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 650 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~N~l~~~~~ 706 (740)
+|++++..|..|+.+++|++|++++|+++ .+|+.+..++ +|+.|++++|++.+.-+
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999999999999999 6777788887 59999999999987554
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=421.22 Aligned_cols=502 Identities=19% Similarity=0.195 Sum_probs=341.1
Q ss_pred CCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEe
Q 045323 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188 (740)
Q Consensus 109 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~ 188 (740)
++++|++++|.++ .++...|.++++|++|++++|.+++..+.+|+++++|++|++++|++++ ++...+.++++|++|+
T Consensus 29 ~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 4455555555544 3333345555555555555555554444445555555555555555443 2222445555555555
Q ss_pred ccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCC-CCChhhcCCCCCCEEEcCCCCC
Q 045323 189 LSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 189 l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
+++|.+. .++...+ ..+.+|++|++++|.+.+ .+|..++++++|++|++++|.+
T Consensus 107 L~~n~l~-~l~~~~~------------------------~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 107 AVETNLA-SLENFPI------------------------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CTTSCCC-CSTTCSC------------------------TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ccccccc-cCCCccc------------------------cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 5555443 1111111 122244444444444444 2577788888889999988888
Q ss_pred CCCCChhHHhcCCCC----CEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccc
Q 045323 268 TREFPNWLLEKNKKL----KRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG 343 (740)
Q Consensus 268 ~~~~~~~~~~~~~~L----~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 343 (740)
.+..+..+ ..+++| +++++++|.+....+..+... +|+.|++++|.............++.++...+....+..
T Consensus 162 ~~~~~~~~-~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 162 QSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred ceecHHHc-cchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 75444443 566666 788888888877666666655 788888888754322222222336666655554332211
Q ss_pred cCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCC-cceecCCcCCCCCCCCceEeCCCcccccCC
Q 045323 344 SIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGN-HFIGDIPKTLSNCSALQGLYISDNNISGNI 422 (740)
Q Consensus 344 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 422 (740)
. . .++.+ ....+ ..+..+ .++.+++.++ .+.+..+..+..+++|++|++++|.+. .+
T Consensus 240 ~--~-----------~l~~~--~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l 297 (570)
T 2z63_A 240 E--G-----------NLEKF--DKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RV 297 (570)
T ss_dssp C--S-----------SCEEC--CTTTT-----GGGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SC
T ss_pred c--h-----------hhhhc--chhhh-----cccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hh
Confidence 0 0 11111 11111 111111 2556666666 556666777777888888888888877 56
Q ss_pred CcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcC
Q 045323 423 PTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRL 502 (740)
Q Consensus 423 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 502 (740)
|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|+.|++++|.+++..
T Consensus 298 ~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~--------- 363 (570)
T 2z63_A 298 KDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKG--------- 363 (570)
T ss_dssp CBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEE---------
T ss_pred hhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccc---------
Confidence 7777777 8888888888877 3333 4678888888888887765555 56888899998888775321
Q ss_pred CCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhcc
Q 045323 503 NSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQ 582 (740)
Q Consensus 503 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 582 (740)
..+..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..|..
T Consensus 364 --~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~------------------------- 415 (570)
T 2z63_A 364 --CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS------------------------- 415 (570)
T ss_dssp --EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-------------------------
T ss_pred --cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-------------------------
Confidence 1256677899999999999999855444 889999999999999987544421
Q ss_pred chhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCc-ccCCccc
Q 045323 583 LPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLT-GESPVTF 661 (740)
Q Consensus 583 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~l 661 (740)
.+..+++|+.|++++|++.+..|..+..+++|++|+|++|+++ +.+|..+
T Consensus 416 -----------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~ 466 (570)
T 2z63_A 416 -----------------------------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466 (570)
T ss_dssp -----------------------------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred -----------------------------hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh
Confidence 1234458999999999999889999999999999999999998 5788999
Q ss_pred cCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 662 SHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 662 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+..+++|+++++++||+.|+|+..
T Consensus 467 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999999999888999999999999999999999999998999999999999999999999853
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-47 Score=440.71 Aligned_cols=538 Identities=20% Similarity=0.142 Sum_probs=410.5
Q ss_pred ccccceEecCCCCceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCccc-chhcccC
Q 045323 29 CQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSF-LQMSELM 107 (740)
Q Consensus 29 c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l 107 (740)
|.|..|.+ .+..++.+||++|.+ ..+.+..|..+++|++||++++.. .+.+ +..+..+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i-----~~i~~~~~~~l~~L~~LdLs~n~~--------------~~~i~~~~f~~L 72 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYI-----RTVTASSFPFLEQLQLLELGSQYT--------------PLTIDKEAFRNL 72 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCC-----CEECSSSCSSCCSCSEEEECTTCC--------------CCEECTTTTSSC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcC-----CccChhHCcccccCeEEeCCCCCC--------------ccccCHHHhcCC
Confidence 33555554 467899999999988 456667788888888888876532 2333 5677889
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCccccccccc--CcCCCCCCEEEcCCCCCCCCCCccccCCCCCCC
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWC--LANLTYLRLLDVSFNQLTENISSSPLMNLTYIE 185 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~ 185 (740)
++|++|+|++|.+. .+.+..|.++++|++|+|++|.+++..+.. |+++++|++|++++|.+++..+...+.++++|+
T Consensus 73 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 99999999999998 443448999999999999999998766654 999999999999999998755544789999999
Q ss_pred EEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCC------CCE
Q 045323 186 ELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHD------LEY 259 (740)
Q Consensus 186 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~ 259 (740)
+|++++|.+.+.. ...+..+. ..+|+.|++++|.+.+..+..+..+++ |+.
T Consensus 152 ~L~Ls~N~i~~~~-~~~l~~l~----------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 152 SIDFSSNQIFLVC-EHELEPLQ----------------------GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEEEESSCCCCCC-SGGGHHHH----------------------HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred EEECCCCcCCeeC-HHHccccc----------------------CCccceEECCCCccccccccchhhcCCccccCceeE
Confidence 9999999987432 22222220 026778888888877776666665554 999
Q ss_pred EEcCCCCCCCCCChhHHhcC--CCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhh-cCCCCcEEec
Q 045323 260 VDLSHLNLTREFPNWLLEKN--KKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGE-VLPNLVVLNV 336 (740)
Q Consensus 260 L~L~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~l~~L~~L~l 336 (740)
|++++|.+.+..+..+.... ..++.+.+..+..... +..+.+.+..+..+.. ..++|+.|++
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~L 273 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDL 273 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEEC
T ss_pred EecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEEC
Confidence 99999988877777654332 4566776664332110 1112222111111111 1368889999
Q ss_pred cCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCc
Q 045323 337 ATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416 (740)
Q Consensus 337 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 416 (740)
++|.+.+..+..+..+. +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 274 s~n~l~~~~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 274 SHGFVFSLNSRVFETLK-----DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp TTCCCCEECSCCSSSCC-----CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred CCCcccccChhhhhcCC-----CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 99988877777777655 7999999999998877888888999999999999998888888899999999999999
Q ss_pred ccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccc
Q 045323 417 NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGD 496 (740)
Q Consensus 417 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 496 (740)
.+....+..|..+++|+.|++++|.++.. ..+++|+.|++++|++. .++.. ..+++.+++++|++++.
T Consensus 349 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~--~~~l~~L~ls~N~l~~l---- 416 (844)
T 3j0a_A 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI--NLTANLIHLSENRLENL---- 416 (844)
T ss_dssp CCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC--CTTCCEEECCSCCCCSS----
T ss_pred CCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc--ccccceeecccCccccC----
Confidence 99877777889999999999999988743 23789999999999988 33332 56788999999988643
Q ss_pred cCCCcCCCCCCcccCCCCCCcEEecccCcccccCCc-cccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCC
Q 045323 497 LSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL-QLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQ 575 (740)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~ 575 (740)
..+..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+....+....
T Consensus 417 --------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~---------------- 472 (844)
T 3j0a_A 417 --------DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC---------------- 472 (844)
T ss_dssp --------TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC----------------
T ss_pred --------chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc----------------
Confidence 1233466899999999999999865433 456689999999999998743322110
Q ss_pred CchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcc
Q 045323 576 DPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG 655 (740)
Q Consensus 576 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 655 (740)
...+..+++|+.|++++|++++..|..|..+++|++|+|++|++++
T Consensus 473 ----------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 473 ----------------------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp ----------------------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ----------------------------------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 0123445689999999999998889889999999999999999998
Q ss_pred cCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCC
Q 045323 656 ESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 656 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 706 (740)
..+..+. ++|+.|+|++|++++.+|..+ .+|+.|++++|++...-+
T Consensus 519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 519 LSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred cChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 8887776 899999999999999888776 479999999999876433
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=429.58 Aligned_cols=356 Identities=19% Similarity=0.250 Sum_probs=196.4
Q ss_pred CChhhcCCCCCCEEEcCCCCCCCC-----------------CChhHHh--cCCCCCEEEccCCcccccCCCCCCCCCCCC
Q 045323 247 FPKFLYHQHDLEYVDLSHLNLTRE-----------------FPNWLLE--KNKKLKRLSLVNISLFGPFPLPIHCHKNLR 307 (740)
Q Consensus 247 ~~~~l~~l~~L~~L~L~~~~~~~~-----------------~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~ 307 (740)
+|..++++++|++|++++|.+.+. +|..+ . .+++|++|++++|.+.+..|..+..+++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 566667777777777777777653 55543 3 566666666666666666666666677777
Q ss_pred EEEccCCc-ccc-cCchhhhhc-----CCCCcEEeccCCcccccCCC--CccCcCccccCCccEEEccCCCCCCcCcccc
Q 045323 308 VLDVSNNK-LQG-HIPIEIGEV-----LPNLVVLNVATNAFNGSIPS--SFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE 378 (740)
Q Consensus 308 ~L~l~~~~-l~~-~~~~~~~~~-----l~~L~~L~l~~n~~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 378 (740)
+|++++|. +++ .+|..+... +++|++|++++|.++ .+|. .+..+. +|++|++++|.+.+.+| .+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-----~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-----KLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-----TCCEEECCSCCCEEECC-CC
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-----CCCEEeCcCCcCccchh-hh
Confidence 77777776 665 566655541 145555555555554 3443 333332 34444444444443333 44
Q ss_pred cCCCCCCeeecCCCcceecCCcCCCCCCC-CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCC
Q 045323 379 FNLTKLKRLNLDGNHFIGDIPKTLSNCSA-LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457 (740)
Q Consensus 379 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 457 (740)
..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++ +++|+
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~----------------------l~~L~ 405 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS----------------------VSVMS 405 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC----------------------SSCEE
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc----------------------cCccC
Confidence 44444444444444444 33333444444 444444444444 3333333322 12455
Q ss_pred EEECCCCcCcccCCCCC--------CCCcccEEEcCCCcccCcCccccCCCcCCCCCC-cccCCCCCCcEEecccCcccc
Q 045323 458 ILDLSRNNISGSLPSCS--------SPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIP-DWMNRLPQLRYLILANNGLEG 528 (740)
Q Consensus 458 ~L~l~~n~~~~~~~~~~--------~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~ 528 (740)
+|++++|.+.+..|... .+++|+.|++++|+++ .+| ..+..+++|++|++++|.++.
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--------------~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--------------KFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC--------------SCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC--------------cCCHHHHccCCCCCEEECCCCCCCC
Confidence 55555555443333211 2334455555444443 222 233445666666666666662
Q ss_pred cCCccccCC-------CCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeee
Q 045323 529 EMPLQLCWL-------NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTN 601 (740)
Q Consensus 529 ~~~~~~~~l-------~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 601 (740)
..+..+... ++|+.|++++|.++ .+|..+..
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------------- 509 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA----------------------------------------- 509 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-----------------------------------------
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-----------------------------------------
Confidence 222222222 26667777766665 34432210
Q ss_pred eeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEEC------cCCcCcccCCccccCCCCCCEEeCCCC
Q 045323 602 FTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNL------SHNNLTGESPVTFSHMKQVESLDLSYN 675 (740)
Q Consensus 602 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L------~~N~l~~~~~~~l~~l~~L~~L~Ls~n 675 (740)
..+++|+.|++++|++.+ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|
T Consensus 510 ------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 510 ------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp ------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 123366677777777764 6666667777777777 456677777777777778888888888
Q ss_pred ccCccCCcccccCCcCceeeccCcccccCCC
Q 045323 676 NLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 676 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 706 (740)
++. .+|..+. ++|+.|++++|++.....
T Consensus 577 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 577 DIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 774 6666554 677888888887765543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-46 Score=423.72 Aligned_cols=363 Identities=16% Similarity=0.193 Sum_probs=219.7
Q ss_pred cccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCC-CCC-CCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEE
Q 045323 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLN-LTR-EFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVL 309 (740)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L 309 (740)
+|+.|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+. .++ ..+..+++|+.|
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~-----------------~~~~~l~~L~~L 553 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLA-----------------DDEDTGPKIQIF 553 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHH-----------------HCTTTTTTCCEE
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhh-----------------hcccccCCccEE
Confidence 34444444444444455555566666666666665 544 4444331 111 023344577777
Q ss_pred EccCCcccccCch--hhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCC-CCe
Q 045323 310 DVSNNKLQGHIPI--EIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTK-LKR 386 (740)
Q Consensus 310 ~l~~~~l~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 386 (740)
++++|.++ .+|. .+.. +++|+.|++++|.+. .+| .+..+. +|++|++++|.+. .+|..+..+++ |+.
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l~-~lp-~~~~L~-----~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQK-MVKLGLLDCVHNKVR-HLE-AFGTNV-----KLTDLKLDYNQIE-EIPEDFCAFTDQVEG 623 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTT-CTTCCEEECTTSCCC-BCC-CCCTTS-----EESEEECCSSCCS-CCCTTSCEECTTCCE
T ss_pred EeeCCcCC-ccCChhhhhc-CCCCCEEECCCCCcc-cch-hhcCCC-----cceEEECcCCccc-cchHHHhhccccCCE
Confidence 77777776 6666 4444 677777777777766 555 555443 6777777777777 55666677777 777
Q ss_pred eecCCCcceecCCcCCCCCC--CCceEeCCCcccccCCCcCC---C--CCCCCCEEeCCCCcCcCCchhhhcCCCCCCEE
Q 045323 387 LNLDGNHFIGDIPKTLSNCS--ALQGLYISDNNISGNIPTRL---G--NLSFLDAIMMPNNRLEGPIPSAFCQLRHLEIL 459 (740)
Q Consensus 387 L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~i~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 459 (740)
|++++|.+. .+|..+...+ +|+.|++++|.+.+.+|... . .+++|+.|++++|.++...+..+..+++|+.|
T Consensus 624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 777777776 5565555543 37778888877775444221 2 23467777777777774444444567777777
Q ss_pred ECCCCcCcccCCC-CCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCcccc--C
Q 045323 460 DLSRNNISGSLPS-CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLC--W 536 (740)
Q Consensus 460 ~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~ 536 (740)
++++|.+. .+|. ... ..+..+.++++|+.|++++|+++ .+|..+. .
T Consensus 703 ~Ls~N~L~-~ip~~~~~-----------------------------~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 703 ILSNNLMT-SIPENSLK-----------------------------PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp ECCSCCCS-CCCTTSSS-----------------------------CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred ECCCCcCC-ccChHHhc-----------------------------cccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 77777666 2221 110 00011223446666666666666 4455444 5
Q ss_pred CCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccC
Q 045323 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPL 616 (740)
Q Consensus 537 l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (740)
+++|+.|++++|++.+ +|..+.. +
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~-------------------------------------------------------L 775 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLN-------------------------------------------------------S 775 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGG-------------------------------------------------------C
T ss_pred CCCcCEEEeCCCCCCc-cchhhhc-------------------------------------------------------C
Confidence 6666666666666553 3332222 2
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
++|+.|++++|+ ++++|++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|
T Consensus 776 ~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdL 834 (876)
T 4ecn_A 776 SQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDI 834 (876)
T ss_dssp TTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEEC
T ss_pred CCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEEC
Confidence 255555555544 3455777777787788888888888888888 46666654 57888888
Q ss_pred cCcccccCCCCcccCCCCccccccccCCCCC--CcCC
Q 045323 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC--GQPL 731 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c--~~~l 731 (740)
++|++....+..+.....+..+.+.+|++.| +|+-
T Consensus 835 s~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 835 ADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp CSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred CCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence 8888877777666555566677777777765 7763
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-46 Score=413.57 Aligned_cols=470 Identities=20% Similarity=0.201 Sum_probs=314.2
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
++|++|++++|.++ .++...|.++++|++|++++|++++..+.+|+++++|++|++++|++++ ++...+.++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEE
Confidence 57777777777776 3433367777777777777777777666777777777777777777765 444357777777777
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
++++|.+.+. ..+..++.+++|++|++++|.+
T Consensus 104 ~Ls~n~l~~~------------------------------------------------~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 104 NLMGNPYQTL------------------------------------------------GVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp ECTTCCCSSS------------------------------------------------CSSCSCTTCTTCCEEEEEESSS
T ss_pred ECCCCccccc------------------------------------------------chhhhhhccCCccEEECCCCcc
Confidence 7777766421 1234556677788888888775
Q ss_pred CCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccC--
Q 045323 268 TREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSI-- 345 (740)
Q Consensus 268 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-- 345 (740)
.+.++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+...+++|++|++++|.+.+..
T Consensus 136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc
Confidence 44565444567888888888888887777888888889999999988876 667766666889999999999887532
Q ss_pred CCCccCcCccccCCccEEEccCCCCCCcCc----ccccCCCCCCeeecCCCcceecCC------cCCCCCCCCceEeCCC
Q 045323 346 PSSFGNTWPWGCFYLEYLVLSNNSLQGQLF----SKEFNLTKLKRLNLDGNHFIGDIP------KTLSNCSALQGLYISD 415 (740)
Q Consensus 346 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~------~~l~~~~~L~~L~l~~ 415 (740)
+..+.. .+++|++|++++|.+.+..+ ..+..+++|+.+++++|.+.+... ..+..+++++.|++.+
T Consensus 215 ~~~~~~----~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 290 (549)
T 2z81_A 215 PLPVDE----VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290 (549)
T ss_dssp CCSSCC----CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred ccchhh----hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccc
Confidence 111111 23478888888887765332 233456778888888887654311 1234456666666666
Q ss_pred cccccCC-----CcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCccc
Q 045323 416 NNISGNI-----PTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ 490 (740)
Q Consensus 416 n~i~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~ 490 (740)
+.+.... +..+...++|+.|++++|.+.......+.++++|++|++++|.+.+..+.
T Consensus 291 ~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------ 352 (549)
T 2z81_A 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK------------------ 352 (549)
T ss_dssp CBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH------------------
T ss_pred cccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc------------------
Confidence 6544210 00111234555555555555522222224455555555555555432110
Q ss_pred CcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC--ccccCCCCCCEEEccCCcCcCCCCccccccccccccC
Q 045323 491 GPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP--LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRED 568 (740)
Q Consensus 491 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~ 568 (740)
.+..++.+++|++|++++|.+++..+ ..+..+++|+.|++++|++. .+|..+.
T Consensus 353 ---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~--------- 407 (549)
T 2z81_A 353 ---------------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ--------- 407 (549)
T ss_dssp ---------------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC---------
T ss_pred ---------------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc---------
Confidence 01224556777777777777764322 34666777777777777765 3443222
Q ss_pred CCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEEC
Q 045323 569 NHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNL 648 (740)
Q Consensus 569 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L 648 (740)
.+++|+.|++++|++. .+|..+ .++|++|+|
T Consensus 408 ----------------------------------------------~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~L 438 (549)
T 2z81_A 408 ----------------------------------------------WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDV 438 (549)
T ss_dssp ----------------------------------------------CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEEC
T ss_pred ----------------------------------------------ccccccEEECCCCCcc-cccchh--cCCceEEEC
Confidence 2346777888888776 344333 268888888
Q ss_pred cCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCC
Q 045323 649 SHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCG 728 (740)
Q Consensus 649 ~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~ 728 (740)
++|++++.. ..+++|++|+|++|+++ .+|+ ...+++|+.|++++|++++.+|..++.+++|+.+++++|||.|+
T Consensus 439 s~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 439 SNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 888888543 46788999999999998 5665 46788999999999999998888888999999999999999999
Q ss_pred cC
Q 045323 729 QP 730 (740)
Q Consensus 729 ~~ 730 (740)
|+
T Consensus 513 ~~ 514 (549)
T 2z81_A 513 CP 514 (549)
T ss_dssp HH
T ss_pred Cc
Confidence 97
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=401.01 Aligned_cols=513 Identities=19% Similarity=0.149 Sum_probs=331.6
Q ss_pred CCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEe
Q 045323 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188 (740)
Q Consensus 109 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~ 188 (740)
++++|||++|.|+ .+++.+|.++++|++|+|++|+|++..+.+|+++++|++|+|++|++++ ++...|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEE
Confidence 3444444444444 3333344444444444444444444444444444444444444444433 3333344444444444
Q ss_pred ccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCC-CCChhhcCCCCCCEEEcCCCCC
Q 045323 189 LSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 189 l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
+++|.++ .++...+.+++ +|+.|++++|.+.. ..|..++.+++|++|++++|.+
T Consensus 131 Ls~N~l~-~l~~~~~~~L~------------------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 131 AVETNLA-SLENFPIGHLK------------------------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTSCCC-CSTTCCCTTCT------------------------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-CCChhhhhcCc------------------------ccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 4444443 22222222222 33333333343332 2456677788888888888888
Q ss_pred CCCCChhHHhcCC----CCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccc
Q 045323 268 TREFPNWLLEKNK----KLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG 343 (740)
Q Consensus 268 ~~~~~~~~~~~~~----~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 343 (740)
.+..+..+ ..+. ....++++.+.+....+..+ ....+..+++.++.....++......++.++...+..+....
T Consensus 186 ~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 186 QSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 75555443 3333 23467777777655444333 334567788887765544444444556666665554332211
Q ss_pred ------cCCCCccCcCccccCCccEEEccCCCCCC---cCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCC
Q 045323 344 ------SIPSSFGNTWPWGCFYLEYLVLSNNSLQG---QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYIS 414 (740)
Q Consensus 344 ------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 414 (740)
.....+.. ...+...++..+.... .....+....+++.+.+.++.+....+ +.....++.|++.
T Consensus 264 ~~~l~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 264 EGNLEKFDKSALEG-----LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELV 336 (635)
T ss_dssp SCCCSCCCTTTTGG-----GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEE
T ss_pred cccccccccccccc-----ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcc
Confidence 11112222 2245555544433221 223344556778888888887765432 4455788888888
Q ss_pred CcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCC---CCCCCCcccEEEcCCCcccC
Q 045323 415 DNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP---SCSSPFNIRRVHLSKNMLQG 491 (740)
Q Consensus 415 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L~l~~n~i~~ 491 (740)
+|.+..... ..+..|+.+.+..|..... .....+++|+.+++++|.+..... ......+|+.+++..+.+.
T Consensus 337 ~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~- 410 (635)
T 4g8a_A 337 NCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI- 410 (635)
T ss_dssp SCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-
T ss_pred cccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-
Confidence 888774433 3456788888888776532 234578889999999888763221 1223678888888887664
Q ss_pred cCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCC
Q 045323 492 PLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNH 570 (740)
Q Consensus 492 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~ 570 (740)
..+..+..+++|+.++++.+......+ ..+..+++++.+++++|.+.+..|..+.
T Consensus 411 -------------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~----------- 466 (635)
T 4g8a_A 411 -------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN----------- 466 (635)
T ss_dssp -------------EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-----------
T ss_pred -------------cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc-----------
Confidence 334556778899999998887764443 4577889999999999988755554333
Q ss_pred CccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccc-ccChhhhhcCCCCcEEECc
Q 045323 571 DLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI-GEIPLQIGELSRIHTLNLS 649 (740)
Q Consensus 571 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~L~L~ 649 (740)
.++.++.|++++|.+. +..|..|..+++|++|+|+
T Consensus 467 --------------------------------------------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 467 --------------------------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp --------------------------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred --------------------------------------------cchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 3348999999999754 4578889999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCC-CCccccccccCCCCCC
Q 045323 650 HNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQF-GTFEEDSYEGNPFLCG 728 (740)
Q Consensus 650 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~-~~l~~l~l~~Np~~c~ 728 (740)
+|++++..|..|+.+++|++|+|++|+|++..|..|..+++|+.|++++|++++.+|..+..+ ++|+.|++++|||.|+
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999999999999999998888999999999999999999999999999888 6899999999999999
Q ss_pred cCC
Q 045323 729 QPL 731 (740)
Q Consensus 729 ~~l 731 (740)
|.+
T Consensus 583 C~~ 585 (635)
T 4g8a_A 583 CEH 585 (635)
T ss_dssp GGG
T ss_pred CCc
Confidence 985
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-44 Score=398.72 Aligned_cols=473 Identities=20% Similarity=0.176 Sum_probs=251.0
Q ss_pred hcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCC
Q 045323 103 MSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLT 182 (740)
Q Consensus 103 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~ 182 (740)
.+..+++|++|++++|.+. .++...|.++++|++|++++|.+++..+.+|+++++|++|++++|++++ ++...+++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCccccccc
Confidence 3444556666666666554 3433355556666666666666555555556666666666666665544 3332455566
Q ss_pred CCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCC----C
Q 045323 183 YIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDL----E 258 (740)
Q Consensus 183 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~ 258 (740)
+|++|++++|.+.+...+..+.+++ +|++|++++|.+.+..+..++.+++| +
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLT------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCT------------------------TCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred cccEEecCCCccceecChhhhcccC------------------------CCCEEeCcCCccceecHHHccchhccchhhh
Confidence 6666666665554211112233333 33334444444433333444444444 4
Q ss_pred EEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccc-cCCCCCCCCCCCCEEEccCCcccc-----cCchhhhhcCC--C
Q 045323 259 YVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFG-PFPLPIHCHKNLRVLDVSNNKLQG-----HIPIEIGEVLP--N 330 (740)
Q Consensus 259 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~-----~~~~~~~~~l~--~ 330 (740)
.+++++|.+.+..+..+ .. .+|++|+++++.... ..+..+..+++++.+.+....+.. .++...+..++ .
T Consensus 181 ~L~l~~n~l~~~~~~~~-~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAF-KE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp EEECTTCCCCEECTTTT-TT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hcccCCCCceecCHHHh-cc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 55555555443333222 11 245555554442110 111222233333333322111100 11111111111 2
Q ss_pred CcEEeccCC-cccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCc
Q 045323 331 LVVLNVATN-AFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQ 409 (740)
Q Consensus 331 L~~L~l~~n-~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 409 (740)
++.+++.++ .+.+..+..+.... +|++|++++|.+.. .+..+..+ +|++|++++|.+. .+|. ..+++|+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~-----~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~ 328 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLT-----NVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLK 328 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGT-----TCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCC
T ss_pred hhhhhhhcchhhhhhchhhhcCcC-----cccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccC
Confidence 334444444 33333444443322 45555555555542 33334444 5555555555544 2222 2344555
Q ss_pred eEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCc--hhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCC
Q 045323 410 GLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPI--PSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 410 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 487 (740)
+|++++|.+.+..+. ..+++|++|++++|.+++.. +..+.++++|++|++++|.+.+
T Consensus 329 ~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------- 387 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------------------- 387 (570)
T ss_dssp EEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------------------
T ss_pred EEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------------------
Confidence 555555554433222 34555555555555554322 3444455555555555554442
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYR 566 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~ 566 (740)
++..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..
T Consensus 388 ------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------ 443 (570)
T 2z63_A 388 ------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------ 443 (570)
T ss_dssp ------------------EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------
T ss_pred ------------------ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------
Confidence 22335566777777777777765544 35667777777777777766554443332
Q ss_pred cCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccc-ccChhhhhcCCCCcE
Q 045323 567 EDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI-GEIPLQIGELSRIHT 645 (740)
Q Consensus 567 ~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~ 645 (740)
+++|+.|++++|++. +.+|..+..+++|++
T Consensus 444 -------------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 444 -------------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp -------------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred -------------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 337777777777776 457777888888888
Q ss_pred EECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCC
Q 045323 646 LNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPD 707 (740)
Q Consensus 646 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~ 707 (740)
|+|++|++++..|..|..+++|++|++++|++++.+|..+..+++|+.|++++|++++..|.
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88888888877788888888888888888888877777788888888888888888877665
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=394.17 Aligned_cols=500 Identities=18% Similarity=0.172 Sum_probs=309.7
Q ss_pred CccccceEecCCCCceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccC
Q 045323 28 CCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELM 107 (740)
Q Consensus 28 ~c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 107 (740)
.|.|.|+ |+. +++++ ..++...+ ++|++||++++++ .+..+..+..+
T Consensus 3 ~C~~~~~-c~~----------~~~~l-----~~ip~~~~---~~L~~L~Ls~n~l--------------~~~~~~~~~~l 49 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSF-----TSIPSGLT---AAMKSLDLSFNKI--------------TYIGHGDLRAC 49 (549)
T ss_dssp EECTTSE-EEC----------TTSCC-----SSCCSCCC---TTCCEEECCSSCC--------------CEECSSTTSSC
T ss_pred cCCCCce-EEC----------CCCcc-----ccccccCC---CCccEEECcCCcc--------------CccChhhhhcC
Confidence 4788887 743 44444 33444332 5666666666544 34445667789
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCC-CCCccccCCCCCCCE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTE-NISSSPLMNLTYIEE 186 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~i~~~~l~~l~~L~~ 186 (740)
++|++|++++|.+. .++...|.++++|++|++++|.+++..+..|+++++|++|++++|++++ .++. .+.++++|++
T Consensus 50 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~ 127 (549)
T 2z81_A 50 ANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQT 127 (549)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCE
T ss_pred CcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccE
Confidence 99999999999998 5555589999999999999999998888889999999999999999976 2344 7899999999
Q ss_pred EeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCC
Q 045323 187 LWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 187 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 266 (740)
|++++|.+.+.++...+. .+.+|+.|++++|.+.+..|..++.+++|++|++++|.
T Consensus 128 L~L~~n~~~~~~~~~~~~------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFA------------------------GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp EEEEESSSCCEECTTTTT------------------------TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred EECCCCccccccCHhhhh------------------------cccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999999854444433333 34478888888888888888999999999999999998
Q ss_pred CCCCCChhHHhcCCCCCEEEccCCcccccC--C-CCCCCCCCCCEEEccCCcccccCchhhh---hcCCCCcEEeccCCc
Q 045323 267 LTREFPNWLLEKNKKLKRLSLVNISLFGPF--P-LPIHCHKNLRVLDVSNNKLQGHIPIEIG---EVLPNLVVLNVATNA 340 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~---~~l~~L~~L~l~~n~ 340 (740)
+. .++..++..+++|++|++++|.+.+.. + .....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.
T Consensus 184 ~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 184 SA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp ST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 76 677777677999999999999886532 1 2334578899999999988865555443 235788888888887
Q ss_pred ccccCCCCccCc-CccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccc
Q 045323 341 FNGSIPSSFGNT-WPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419 (740)
Q Consensus 341 ~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~ 419 (740)
+.+......... ....+.+++.+++.++.+..... +.. .+..+...++|++|++++|.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~-----------------l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FYD-----------------LSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--SCC-----------------CCHHHHHSTTCCEEEEESSCCC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhh--ccc-----------------chhhhhhcccceEEEeccCccc
Confidence 764221100000 00012245555555554432100 000 0000112245566666666555
Q ss_pred cCCCcCC-CCCCCCCEEeCCCCcCcCCchh---hhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCcc
Q 045323 420 GNIPTRL-GNLSFLDAIMMPNNRLEGPIPS---AFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLG 495 (740)
Q Consensus 420 ~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 495 (740)
.+|..+ ..+++|+.|++++|.+++..+. .+..+++|++|++++|++++..+
T Consensus 324 -~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------ 378 (549)
T 2z81_A 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK------------------------ 378 (549)
T ss_dssp -CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH------------------------
T ss_pred -cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc------------------------
Confidence 334333 3456666666666665544332 24556666666666665542110
Q ss_pred ccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCC
Q 045323 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQ 575 (740)
Q Consensus 496 ~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~ 575 (740)
.+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+.+ +|..
T Consensus 379 ----------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~------------------ 428 (549)
T 2z81_A 379 ----------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC------------------ 428 (549)
T ss_dssp ----------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT------------------
T ss_pred ----------chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch------------------
Confidence 0012333444555555555444 334444445555555555555431 1110
Q ss_pred CchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcc
Q 045323 576 DPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG 655 (740)
Q Consensus 576 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 655 (740)
.+++|+.|++++|++++.. ..+++|++|+|++|+++
T Consensus 429 ---------------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 429 ---------------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK- 464 (549)
T ss_dssp ---------------------------------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-
T ss_pred ---------------------------------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-
Confidence 0124555566666555322 34566666666666666
Q ss_pred cCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCC
Q 045323 656 ESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 656 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 706 (740)
.+|. ...+++|+.|+|++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 3343 2455666666666666665555566666666666666666655444
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-45 Score=401.21 Aligned_cols=439 Identities=20% Similarity=0.180 Sum_probs=267.0
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
++|++|++++|.+. .++...|.++++|++|++++|++++..|.+|+++++|++|++++|++++ +|. . .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISC-H--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EEC-C--CCCCCSEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCc-c--ccCCccEE
Confidence 45555555555554 3333345555555555555555555545555555555555555555542 443 1 44555555
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCC-CCChhhcCCCCCCEEEcCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~ 266 (740)
++++|.+. + .+|..++.+++|++|++++|.
T Consensus 96 ~L~~N~l~-------------------------------------------------~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 96 DLSFNAFD-------------------------------------------------ALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp ECCSSCCS-------------------------------------------------SCCCCGGGGGCTTCCEEEEEESS
T ss_pred eccCCccc-------------------------------------------------cccchhhhccCCcceEEEecCcc
Confidence 55555443 2 245667777888888888887
Q ss_pred CCCCCChhHHhcCCCC--CEEEccCCcc--cccCCCCCCCCC-CCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcc
Q 045323 267 LTREFPNWLLEKNKKL--KRLSLVNISL--FGPFPLPIHCHK-NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~L--~~L~L~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~ 341 (740)
+.+ .. +..+++| ++|++++|.+ ....|..+..+. +...+++++|.+.+.++...+..++
T Consensus 127 l~~---~~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~------------ 190 (520)
T 2z7x_B 127 LEK---SS-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA------------ 190 (520)
T ss_dssp CCG---GG-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS------------
T ss_pred cch---hh-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc------------
Confidence 764 11 3455666 6666666665 444444443332 1223344444443333332222233
Q ss_pred cccCCCCccCcCccccCCccEEEccCCC-------CCCcCcccccCCCCCCeeecCCCcceecCCcCC---CCCCCCceE
Q 045323 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNS-------LQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTL---SNCSALQGL 411 (740)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L 411 (740)
+|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+.....+ ...++|++|
T Consensus 191 -----------------~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 191 -----------------NLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp -----------------EEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred -----------------ceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 45555555554 332222 45566777777777766554211111 112477788
Q ss_pred eCCCcccccCCCcCC-----CCCCCCCEEeCCCCcCcCCchhhhcCC---CCCCEEECCCCcCcccCCCCCCCCcccEEE
Q 045323 412 YISDNNISGNIPTRL-----GNLSFLDAIMMPNNRLEGPIPSAFCQL---RHLEILDLSRNNISGSLPSCSSPFNIRRVH 483 (740)
Q Consensus 412 ~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 483 (740)
++++|.+.+.+|..+ ..++.|+.+++++|.+ ......+..+ ++|+.|++++|.+....
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~------------- 318 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML------------- 318 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-------------
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc-------------
Confidence 888887776677666 6777777777777777 2222333333 56777777777654211
Q ss_pred cCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcC--CCCcccccc
Q 045323 484 LSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSG--QIPHCLYNI 561 (740)
Q Consensus 484 l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~l 561 (740)
.+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ .+|..
T Consensus 319 -------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~---- 369 (520)
T 2z7x_B 319 -------------------------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM---- 369 (520)
T ss_dssp -------------------------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH----
T ss_pred -------------------------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH----
Confidence 01345666667777776666566666667777777777776652 11111
Q ss_pred ccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhh-hhcC
Q 045323 562 SFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQ-IGEL 640 (740)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-l~~l 640 (740)
+..+++|+.|++++|++.+.+|.. +..+
T Consensus 370 ---------------------------------------------------~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 370 ---------------------------------------------------TTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp ---------------------------------------------------HTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred ---------------------------------------------------HhhCCCCCEEECCCCcCCcccccchhccC
Confidence 123446777777777777545543 6777
Q ss_pred CCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCcccccc
Q 045323 641 SRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSY 720 (740)
Q Consensus 641 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l 720 (740)
++|++|+|++|++++..|..+. ++|+.|++++|+++ .+|+.+..+++|+.|++++|+++..++..+..+++|+++++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEEC
Confidence 8888888888888877776654 78899999999988 77777778899999999999988766655788889999999
Q ss_pred ccCCCCCCcCC
Q 045323 721 EGNPFLCGQPL 731 (740)
Q Consensus 721 ~~Np~~c~~~l 731 (740)
++||+.|+|++
T Consensus 476 ~~N~~~c~c~~ 486 (520)
T 2z7x_B 476 HTNPWDCSCPR 486 (520)
T ss_dssp CSSCBCCCHHH
T ss_pred cCCCCcccCCc
Confidence 99999999874
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=378.75 Aligned_cols=521 Identities=19% Similarity=0.160 Sum_probs=320.7
Q ss_pred ceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCC
Q 045323 42 KVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLN 121 (740)
Q Consensus 42 ~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~ 121 (740)
.++.|||++|.+ ..+++.+|.++++|++|||++|+++.+. +..+..+++|++|+|++|+++
T Consensus 53 ~~~~LdLs~N~i-----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~--------------~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 53 STKNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIE--------------DGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp TCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTCCCCEEC--------------TTTTTTCTTCCEEECTTCCCC
T ss_pred CCCEEEeeCCCC-----CCCCHHHHhCCCCCCEEECCCCcCCCcC--------------hhHhcCCCCCCEEEccCCcCC
Confidence 566777777766 4455666666666666666665543321 233445667777777777665
Q ss_pred CccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCC-CCccccCCCCCCCEEeccCCcccccCCc
Q 045323 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTEN-ISSSPLMNLTYIEELWLSNNHFQISISL 200 (740)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-i~~~~l~~l~~L~~L~l~~n~~~~~~~~ 200 (740)
.++...|.++++|++|++++|++++..+..|+++++|++|++++|++.+. ++. .+..+++|++|++++|.+++ +..
T Consensus 114 -~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~ 190 (635)
T 4g8a_A 114 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS-IYC 190 (635)
T ss_dssp -EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCE-ECG
T ss_pred -CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccccc-ccc
Confidence 55555566777777777777777665555667777777777777766542 233 55666777777777766652 222
Q ss_pred cccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCC
Q 045323 201 EPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNK 280 (740)
Q Consensus 201 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 280 (740)
..+..+.++.. ....++++.+.+....+..+ ....++.+++.++......+...+..+.
T Consensus 191 ~~l~~L~~l~~--------------------~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~ 249 (635)
T 4g8a_A 191 TDLRVLHQMPL--------------------LNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLA 249 (635)
T ss_dssp GGGHHHHTCTT--------------------CCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTT
T ss_pred ccccchhhhhh--------------------hhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCc
Confidence 33332222110 22344455554444333222 2234455666655444333333344555
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccc---cCCCCccCcCcccc
Q 045323 281 KLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG---SIPSSFGNTWPWGC 357 (740)
Q Consensus 281 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~~~~~~ 357 (740)
.++...+......... .+. ............+....+..+.... .....+.. .
T Consensus 250 ~l~~~~l~~~~~~~~~------------------~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~-----~ 305 (635)
T 4g8a_A 250 GLEVHRLVLGEFRNEG------------------NLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC-----L 305 (635)
T ss_dssp TCEEEEEEEECCTTSC------------------CCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG-----G
T ss_pred cccccccccccccccc------------------ccc-cccccccccccchhhhhhhhhhhcccccchhhhhhh-----h
Confidence 5554444322111000 000 0000000112223333222221110 11111221 2
Q ss_pred CCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeC
Q 045323 358 FYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMM 437 (740)
Q Consensus 358 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 437 (740)
.+++.+++.++.+... ..+.....++.|++.+|.+....+ ..++.|+.+++..+.+... .....+++|+.+++
T Consensus 306 ~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL 378 (635)
T ss_dssp TTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred cccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchh
Confidence 2566666666655432 223445667777777776654333 2345677777777765532 23446777888888
Q ss_pred CCCcCcC--CchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCC
Q 045323 438 PNNRLEG--PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQ 515 (740)
Q Consensus 438 ~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 515 (740)
+.|.+.. ..+..+..+.+|+.+++..+........+..+++|+.+++.++..... ..+..+..+++
T Consensus 379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~------------~~~~~~~~l~~ 446 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM------------SEFSVFLSLRN 446 (635)
T ss_dssp CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST------------TSSCTTTTCTT
T ss_pred hccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc------------ccccccccccc
Confidence 8777642 344556677888888888888776666666788888888887766432 22345677888
Q ss_pred CcEEecccCcccccCCccccCCCCCCEEEccCCcCcC-CCCccccccccccccCCCCccCCCchhhccchhhHHhhhccc
Q 045323 516 LRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSG-QIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYH 594 (740)
Q Consensus 516 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 594 (740)
++.++++.|.+....+..+..+++|+.|++++|.+.. ..|..|
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~------------------------------------ 490 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------------------------------------ 490 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC------------------------------------
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhh------------------------------------
Confidence 9999999999887778888888999999999887542 233322
Q ss_pred ccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCC
Q 045323 595 NHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674 (740)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~ 674 (740)
..+++|+.||+++|++.+..|..|.++++|++|+|++|++++..|..|+.+++|+.|+|++
T Consensus 491 -------------------~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 491 -------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp -------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred -------------------hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 3345888999999999888888899999999999999999988888888999999999999
Q ss_pred CccCccCCcccccC-CcCceeeccCccccc
Q 045323 675 NNLNGKIPPRLIEL-NALAVFSVAFNNLSG 703 (740)
Q Consensus 675 n~l~~~~~~~l~~l-~~L~~L~ls~N~l~~ 703 (740)
|++++..|..+..+ ++|+.|++++|++..
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99998888888887 689999999998864
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=377.96 Aligned_cols=373 Identities=17% Similarity=0.173 Sum_probs=225.2
Q ss_pred CCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEE
Q 045323 83 KNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLL 162 (740)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 162 (740)
++|++|+++ .+.+.+..+..+..+++|++|++++|.++ .+++..|.++++|++|++++|+++. +|.. .+++|++|
T Consensus 21 ~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEE
T ss_pred ccccEEECC-CCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEE
Confidence 456667777 56666666788899999999999999998 4544489999999999999999994 5554 89999999
Q ss_pred EcCCCCCCC-CCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCC
Q 045323 163 DVSFNQLTE-NISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGH 241 (740)
Q Consensus 163 ~l~~n~l~~-~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 241 (740)
++++|++++ .+|. .++++++|++|++++|.+.+
T Consensus 96 ~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~--------------------------------------------- 129 (520)
T 2z7x_B 96 DLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK--------------------------------------------- 129 (520)
T ss_dssp ECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG---------------------------------------------
T ss_pred eccCCccccccchh-hhccCCcceEEEecCcccch---------------------------------------------
Confidence 999999987 3555 79999999999999998752
Q ss_pred CCCCCCChhhcCCCCC--CEEEcCCCCC--CCCCChhHHhcCC-CCCEEEccCCcccccC-CCCCCCCCCCCEEEccCCc
Q 045323 242 GDSGIFPKFLYHQHDL--EYVDLSHLNL--TREFPNWLLEKNK-KLKRLSLVNISLFGPF-PLPIHCHKNLRVLDVSNNK 315 (740)
Q Consensus 242 ~~~~~~~~~l~~l~~L--~~L~L~~~~~--~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~-~~~l~~~~~L~~L~l~~~~ 315 (740)
..+..+++| ++|++++|.+ .+..|..+ ..+. +...+++++|.+.+.. ...+..+++|+.+++++|.
T Consensus 130 -------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 130 -------SSVLPIAHLNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp -------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT-TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred -------hhccccccceeeEEEeecccccccccccccc-cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 123344556 9999999999 66666654 3333 2336677777765544 3456789999999999986
Q ss_pred -------ccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeee
Q 045323 316 -------LQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLN 388 (740)
Q Consensus 316 -------l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 388 (740)
+.+.++ .+.. +++|+.|++++|.+.+..+..+.... .+++|++|++++|.+.+..|..+...
T Consensus 202 ~~~~~~~~~~~~~-~l~~-l~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~------- 270 (520)
T 2z7x_B 202 EDNKCSYFLSILA-KLQT-NPKLSNLTLNNIETTWNSFIRILQLV--WHTTVWYFSISNVKLQGQLDFRDFDY------- 270 (520)
T ss_dssp STTTTHHHHHHHH-GGGG-CTTCCEEEEEEEEEEHHHHHHHHHHH--HTSSCSEEEEEEEEEESCCCCCCCCC-------
T ss_pred cccccceeecchh-hhcc-ccchhhccccccccCHHHHHHHHHHh--hhCcccEEEeecccccCccccchhhc-------
Confidence 554444 3333 67788888877766543221111000 01245555555555554444444000
Q ss_pred cCCCcceecCCcCCCCCCCCceEeCCCcccccCCC-cCCCCC---CCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCC
Q 045323 389 LDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP-TRLGNL---SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN 464 (740)
Q Consensus 389 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 464 (740)
....+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|
T Consensus 271 ------------~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 271 ------------SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp ------------CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ------------ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 004444455555555444 122 222222 34555555555543221 1135556666666666
Q ss_pred cCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCc-cccCCCCCCE
Q 045323 465 NISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL-QLCWLNKLQL 542 (740)
Q Consensus 465 ~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~ 542 (740)
.+.+..+.. ..+++|+.|++++|++++. +.+|..+..+++|++|++++|.+.+.+|. .+..+++|+.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKEL-----------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBH-----------HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCcc-----------ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 555322221 1233333333333333210 01234455566666666666666643332 3555566666
Q ss_pred EEccCCcCcC
Q 045323 543 VDLSHNNLSG 552 (740)
Q Consensus 543 L~l~~n~~~~ 552 (740)
|++++|.+++
T Consensus 404 L~Ls~N~l~~ 413 (520)
T 2z7x_B 404 LNMSSNILTD 413 (520)
T ss_dssp EECCSSCCCG
T ss_pred EECcCCCCCc
Confidence 6666665543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=388.30 Aligned_cols=419 Identities=17% Similarity=0.224 Sum_probs=339.3
Q ss_pred cccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC------CC------CCChhHHh----------------------
Q 045323 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL------TR------EFPNWLLE---------------------- 277 (740)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~------~~------~~~~~~~~---------------------- 277 (740)
+++.|+++++.+.+.+|..++++++|++|++++|.+ .+ .+|.....
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 799999999999999999999999999999999965 11 11111000
Q ss_pred -----------------cCCCCCEEEcc--CCcccccCCCCCCCCCCCCEEEccCCccccc-----------------Cc
Q 045323 278 -----------------KNKKLKRLSLV--NISLFGPFPLPIHCHKNLRVLDVSNNKLQGH-----------------IP 321 (740)
Q Consensus 278 -----------------~~~~L~~L~L~--~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-----------------~~ 321 (740)
....++.+.+. .|.+.+ +|..+..+++|++|++++|.+++. +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 00112222222 345665 788899999999999999999864 88
Q ss_pred hhhh--hcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCC-CCC-cCcccccCC------CCCCeeecCC
Q 045323 322 IEIG--EVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNS-LQG-QLFSKEFNL------TKLKRLNLDG 391 (740)
Q Consensus 322 ~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~ 391 (740)
..+. . +++|++|++++|.+.+.+|..+..+. +|++|++++|. +++ ..|..+..+ ++|++|++++
T Consensus 241 ~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 241 EDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALP-----EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp SCCCGGG-CTTCCEEEEECCTTCSSCCTTTTTCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred hhhhhcc-cCCCCEEEecCCcCCccChHHHhcCC-----CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 8776 5 89999999999999989998888766 79999999998 887 677777665 8999999999
Q ss_pred CcceecCCc--CCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCC-CCEEECCCCcCcc
Q 045323 392 NHFIGDIPK--TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH-LEILDLSRNNISG 468 (740)
Q Consensus 392 n~~~~~~~~--~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~ 468 (740)
|.+. .+|. .+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.+.
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 9998 7777 78899999999999999998888 8889999999999999998 67778889998 999999999998
Q ss_pred cCCCCCC---CCcccEEEcCCCcccCcCccccCCCcCCCCCCcccC-------CCCCCcEEecccCcccccCCccccCCC
Q 045323 469 SLPSCSS---PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMN-------RLPQLRYLILANNGLEGEMPLQLCWLN 538 (740)
Q Consensus 469 ~~~~~~~---~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~-------~~~~L~~L~ls~n~l~~~~~~~~~~l~ 538 (740)
.+|.... +++|+.|++++|.+++ .+|..+. .+++|++|++++|.++...+..+..++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-------------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~ 457 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGS-------------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTT-------------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred ccchhhhhcccCccCEEECcCCcCCC-------------cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence 5555433 3489999999988764 3444454 678999999999999955445567789
Q ss_pred CCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCC
Q 045323 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHS 618 (740)
Q Consensus 539 ~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (740)
+|+.|++++|.+. .+|....... ......+++
T Consensus 458 ~L~~L~Ls~N~l~-~i~~~~~~~~-----------------------------------------------~~~~~~l~~ 489 (636)
T 4eco_A 458 PLSSINLMGNMLT-EIPKNSLKDE-----------------------------------------------NENFKNTYL 489 (636)
T ss_dssp CCSEEECCSSCCS-BCCSSSSEET-----------------------------------------------TEECTTGGG
T ss_pred CCCEEECCCCCCC-CcCHHHhccc-----------------------------------------------cccccccCC
Confidence 9999999999987 5554321100 001234458
Q ss_pred ccEEEcccCcccccChhhhh--cCCCCcEEECcCCcCcccCCccccCCCCCCEEeC------CCCccCccCCcccccCCc
Q 045323 619 MSGLDLSCNKLIGEIPLQIG--ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL------SYNNLNGKIPPRLIELNA 690 (740)
Q Consensus 619 L~~L~ls~n~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~ 690 (740)
|+.|++++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 999999999998 7888886 99999999999999997 8889999999999999 567788899999999999
Q ss_pred CceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 691 LAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 691 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
|+.|++++|++ +.+|..+. ++|+.|++++||+.|
T Consensus 568 L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 568 LTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 99999999999 55676544 899999999999987
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=379.00 Aligned_cols=461 Identities=20% Similarity=0.129 Sum_probs=248.6
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
...+++++++|.++ .+|. .+. ++|++|++++|.+++..+.+|+++++|++|++++|++++..+. .+.++++|++|
T Consensus 31 ~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L 105 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYL 105 (562)
T ss_dssp --CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEE
T ss_pred CCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEE
Confidence 34466777777666 4554 232 5677777777777666666677777777777777776653233 56667777777
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCC-CChhhcCCCCCCEEEcCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGI-FPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~ 266 (740)
++++|.++ .++.. .+.+|+.|++++|.+.+. .|..++++++|++|++++|.
T Consensus 106 ~Ls~N~l~-~lp~~---------------------------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---------------------------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp ECTTSCCC-EECSC---------------------------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred ECCCCcCC-ccCcc---------------------------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 77776654 22210 111333333333333331 24555666666666666665
Q ss_pred CCCCCChhHHhcCCCC--CEEEccCCcc--cccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCccc
Q 045323 267 LTREFPNWLLEKNKKL--KRLSLVNISL--FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~L--~~L~L~~~~~--~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 342 (740)
+.+.. +..+++| ++|++++|.+ ....+..+..+.. ..-.+++++|.+.
T Consensus 158 l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~------------------------~~l~l~l~~n~~~ 209 (562)
T 3a79_B 158 FRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT------------------------TVLHLVFHPNSLF 209 (562)
T ss_dssp CCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE------------------------EEEEEEECSSSCC
T ss_pred cccCc----hhhhhhceeeEEEeecccccccccCcccccccCc------------------------ceEEEEecCccch
Confidence 54311 1233333 5555555544 3322222222110 0112344444443
Q ss_pred ccCCCCccCcCccccCCccEEEccCCCCC----CcCcccccCCCCCCeeecCCCcceec----CCcCCCCCCCCceEeCC
Q 045323 343 GSIPSSFGNTWPWGCFYLEYLVLSNNSLQ----GQLFSKEFNLTKLKRLNLDGNHFIGD----IPKTLSNCSALQGLYIS 414 (740)
Q Consensus 343 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~ 414 (740)
+..+..... .+++|+.+++++|... ......+..+++|+.+++.++.+.+. .+.. ...++|++|+++
T Consensus 210 ~~~~~~~~~----~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~ 284 (562)
T 3a79_B 210 SVQVNMSVN----ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIY 284 (562)
T ss_dssp CCCCEEEES----SEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred hhhhhhccc----ccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEe
Confidence 322221111 1225666666666421 01123345667777777766654331 1111 122478888888
Q ss_pred CcccccCCCcCC-----CCCCCCCEEeCCCCcCcCCchhhhc---CCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCC
Q 045323 415 DNNISGNIPTRL-----GNLSFLDAIMMPNNRLEGPIPSAFC---QLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSK 486 (740)
Q Consensus 415 ~n~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 486 (740)
+|.+.+.+|..+ ..++.|+.+++..+.+. .....+. ...+|++|++++|.+.... .
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~-~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~-------------- 348 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMV-C-------------- 348 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS-SCHHHHHHHHHTCCCSEEEEESSCCCCCC-C--------------
T ss_pred ccEeeccccchhhhcccccchheehhhcccceee-cChhhhhhhhccCcceEEEccCCCccccc-C--------------
Confidence 888877677665 55666666666666551 2212222 2256777777777654211 1
Q ss_pred CcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCC--Cccccccccc
Q 045323 487 NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQI--PHCLYNISFN 564 (740)
Q Consensus 487 n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--p~~~~~l~~~ 564 (740)
...+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.. |..
T Consensus 349 -----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------- 398 (562)
T 3a79_B 349 -----------------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM------- 398 (562)
T ss_dssp -----------------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT-------
T ss_pred -----------------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh-------
Confidence 123455556666666555555555555666666666666554210 111
Q ss_pred cccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChh-hhhcCCCC
Q 045323 565 YREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPL-QIGELSRI 643 (740)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~l~~l~~L 643 (740)
+..+++|+.|++++|++.+.+|. .+..+++|
T Consensus 399 ------------------------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 399 ------------------------------------------------TKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp ------------------------------------------------TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred ------------------------------------------------hcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 12233566666666666553333 35566777
Q ss_pred cEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccC
Q 045323 644 HTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGN 723 (740)
Q Consensus 644 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N 723 (740)
++|+|++|++++..|..+. ++|+.|+|++|+++ .+|+.+..+++|+.|++++|++++.++..++.+++|+.+++++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 7777777777665555543 56777777777776 55555557777777777777777555544667777777777777
Q ss_pred CCCCCcCC
Q 045323 724 PFLCGQPL 731 (740)
Q Consensus 724 p~~c~~~l 731 (740)
||.|+|++
T Consensus 508 ~~~c~c~~ 515 (562)
T 3a79_B 508 PWDCTCPG 515 (562)
T ss_dssp CBCCCHHH
T ss_pred CcCCCcch
Confidence 77777753
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=370.37 Aligned_cols=423 Identities=17% Similarity=0.208 Sum_probs=340.3
Q ss_pred ccccEEEecCCCCCCCCChhhcCCCCCCEEEc-CCCCCCCCCChh-----------------------------------
Q 045323 231 FQLTSISLFGHGDSGIFPKFLYHQHDLEYVDL-SHLNLTREFPNW----------------------------------- 274 (740)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~----------------------------------- 274 (740)
.+++.|+++++.+.+.+|..+++++.|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47999999999999999999999999999999 777654432210
Q ss_pred -----HH----------hcCCCCCEEEccC--CcccccCCCCCCCCCCCCEEEccCCcccc-----------------cC
Q 045323 275 -----LL----------EKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVSNNKLQG-----------------HI 320 (740)
Q Consensus 275 -----~~----------~~~~~L~~L~L~~--~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-----------------~~ 320 (740)
+. .....++.+.+.. |.+.+ +|..+..+++|+.|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00 0011233333332 55555 78889999999999999999997 38
Q ss_pred chhhh-hcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCC-CCC-cCcccccC-------CCCCCeeecC
Q 045323 321 PIEIG-EVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNS-LQG-QLFSKEFN-------LTKLKRLNLD 390 (740)
Q Consensus 321 ~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~-------l~~L~~L~l~ 390 (740)
|..+. ..+++|+.|++++|.+.+.+|..+..+. +|++|++++|+ +++ .+|..+.. +++|+.|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-----~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-----ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCC-----CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 88774 2389999999999999999998888766 89999999998 886 56665544 4599999999
Q ss_pred CCcceecCCc--CCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCC-CCEEECCCCcCc
Q 045323 391 GNHFIGDIPK--TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH-LEILDLSRNNIS 467 (740)
Q Consensus 391 ~n~~~~~~~~--~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~ 467 (740)
+|.+. .+|. .+..+++|+.|++++|.+. .+| .|..+++|+.|++++|.+. .+|..+.++++ |++|++++|.+.
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 99998 7777 7899999999999999999 777 8999999999999999999 78888999999 999999999998
Q ss_pred ccCCCCCC-C--CcccEEEcCCCcccCcCccccCCCcCCCCCCcccC--CCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 468 GSLPSCSS-P--FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMN--RLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 468 ~~~~~~~~-~--~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
.+|.... . ++|+.|++++|++.+..+ .++..+. .+++|+.|++++|.+....+..+..+++|+.
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip----------~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGR----------NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSS----------SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccc----------cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence 5555444 3 459999999999875322 1222222 3468999999999999443344568999999
Q ss_pred EEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEE
Q 045323 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622 (740)
Q Consensus 543 L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 622 (740)
|++++|.+. .+|..+.... ......+++|+.|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~-----------------------------------------------~~~l~nl~~L~~L 733 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPK-----------------------------------------------DGNYKNTYLLTTI 733 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCT-----------------------------------------------TSCCTTGGGCCEE
T ss_pred EECCCCcCC-ccChHHhccc-----------------------------------------------cccccccCCccEE
Confidence 999999998 6665432211 0011234589999
Q ss_pred EcccCcccccChhhhh--cCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCC------CccCccCCcccccCCcCcee
Q 045323 623 DLSCNKLIGEIPLQIG--ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY------NNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 623 ~ls~n~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~l~~l~~L~~L 694 (740)
++++|++. .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|
T Consensus 734 ~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 734 DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp ECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 99999998 7888887 89999999999999996 788899999999999977 78888999999999999999
Q ss_pred eccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
+|++|++ +.+|..+. ++|+.|++++||+..
T Consensus 812 ~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 812 QIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp ECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred ECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 9999999 66676543 699999999999864
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=343.62 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=70.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..|..|..+++|++|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|+.|+++
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 55555555555555555556666666666666666665556666666666666666666665556666666666666666
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+|++++.++..++.+++|++|++++||+.|+|+
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 666666555555666666666666666666665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=347.36 Aligned_cols=445 Identities=19% Similarity=0.175 Sum_probs=266.4
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
++|++|++++|.+. .++...|.++++|++|++++|.+++..|.+|+++++|++|++++|+++. +|. . .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~--~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISC-C--PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECS-C--CCTTCSEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCc-c--ccccCCEE
Confidence 78999999999998 5665589999999999999999998888999999999999999999974 777 3 89999999
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCC--CCCCChhhcCCC-CCCEEEcCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGD--SGIFPKFLYHQH-DLEYVDLSH 264 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~L~~ 264 (740)
++++|.+.+......+.++++|++|+++...........+... +|+.|++++|.+ .+..+..+..++ ..-.+++++
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999998742223567777766666665533222111111111 235666655555 444444444432 111334455
Q ss_pred CCCCCCCChhHHhcCCCCCEEEccCCcc----cccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCc
Q 045323 265 LNLTREFPNWLLEKNKKLKRLSLVNISL----FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNA 340 (740)
Q Consensus 265 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~----~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~ 340 (740)
|.+.+.++...+..+++|+.+++++|.. .......+..+++|+.++++++.+.+.....+..
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-------------- 271 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-------------- 271 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH--------------
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH--------------
Confidence 5554444433333444455555544420 0000112233344444444443332211111000
Q ss_pred ccccCCCCccCcCccccCCccEEEccCCCCCCcCcccc-----cCCCCCCeeecCCCcceecCC-cCCC---CCCCCceE
Q 045323 341 FNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE-----FNLTKLKRLNLDGNHFIGDIP-KTLS---NCSALQGL 411 (740)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~l~---~~~~L~~L 411 (740)
.+ ..++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ .+| ..+. ...+|++|
T Consensus 272 -------~~------~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 272 -------FF------WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp -------HH------TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred -------hh------hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 00 01145555555555554444433 2333333333333332 111 0000 11357777
Q ss_pred eCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccC
Q 045323 412 YISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG 491 (740)
Q Consensus 412 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~ 491 (740)
++++|.+.... ....+++|++|++++|.+++..+..+.++++|++|++++|++.+..
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------- 393 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--------------------- 393 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT---------------------
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc---------------------
Confidence 77777665321 1256777888888888877777777788888888888888776211
Q ss_pred cCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCC
Q 045323 492 PLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNH 570 (740)
Q Consensus 492 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~ 570 (740)
.+|..+..+++|++|++++|.+.+.+| ..+..+++|+.|++++|.+++.+|..+.
T Consensus 394 -------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~----------- 449 (562)
T 3a79_B 394 -------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP----------- 449 (562)
T ss_dssp -------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-----------
T ss_pred -------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-----------
Confidence 123345667778888888887776344 3467778888888888877644332211
Q ss_pred CccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcC
Q 045323 571 DLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH 650 (740)
Q Consensus 571 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 650 (740)
++|+.|++++|+++ .+|..+..+++|++|+|++
T Consensus 450 ----------------------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 450 ----------------------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp ----------------------------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCS
T ss_pred ----------------------------------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCC
Confidence 26777788888776 5666666788888888888
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCccCccC
Q 045323 651 NNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681 (740)
Q Consensus 651 N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 681 (740)
|++++..+..|..+++|+.|++++|++.+..
T Consensus 483 N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 483 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 8888444444777788888888888777543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=327.11 Aligned_cols=365 Identities=17% Similarity=0.154 Sum_probs=240.3
Q ss_pred CCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCccccc-CCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcE
Q 045323 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGP-FPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVV 333 (740)
Q Consensus 255 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~ 333 (740)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+... .+..+..+++|++|++++|.+++..|..+.. +++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCE
T ss_pred CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCE
Confidence 456666666666654334332 4555666666665555422 2344555666666666666655333444433 556666
Q ss_pred EeccCCcccccCCCC--ccCcCccccCCccEEEccCCCCCCcCccc-ccCCCCCCeeecCCCcceecCCcCCCCC--CCC
Q 045323 334 LNVATNAFNGSIPSS--FGNTWPWGCFYLEYLVLSNNSLQGQLFSK-EFNLTKLKRLNLDGNHFIGDIPKTLSNC--SAL 408 (740)
Q Consensus 334 L~l~~n~~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~--~~L 408 (740)
|++++|.+++..+.. +..+. +|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+ .+|
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLT-----SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCT-----TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred EeCCCCCCCccccCcccccCcc-----cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 666666555422221 33322 5666666666666554443 5566666666666666665555555444 456
Q ss_pred ceEeCCCcccccCCCcC--------CCCCCCCCEEeCCCCcCcCCchhhhcCC---CCCCEEECCCCcCcccCCCCCCCC
Q 045323 409 QGLYISDNNISGNIPTR--------LGNLSFLDAIMMPNNRLEGPIPSAFCQL---RHLEILDLSRNNISGSLPSCSSPF 477 (740)
Q Consensus 409 ~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~ 477 (740)
+.|++++|.+.+..+.. +..+++|++|++++|.+++..+..+... ++|+.|++++|...+....
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----- 257 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----- 257 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----
Confidence 66666666665433322 2244566666666666655555544332 5566666666554322111
Q ss_pred cccEEEcCCCcccCcCccccCCCcCCCCCCcccC--CCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCC
Q 045323 478 NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMN--RLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555 (740)
Q Consensus 478 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 555 (740)
.+.+....+..+. ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus 258 ---------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 258 ---------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp ---------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred ---------------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 1111111112222 24789999999999998888889999999999999999986655
Q ss_pred ccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChh
Q 045323 556 HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPL 635 (740)
Q Consensus 556 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 635 (740)
..+.+ +++|+.|++++|++.+..|.
T Consensus 317 ~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 317 NAFWG-------------------------------------------------------LTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp TTTTT-------------------------------------------------------CTTCCEEECCSSCCCEECGG
T ss_pred hHhcC-------------------------------------------------------cccCCEEECCCCccCCcChh
Confidence 54443 34899999999999988899
Q ss_pred hhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCC
Q 045323 636 QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPD 707 (740)
Q Consensus 636 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~ 707 (740)
.|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999999999999999999999977777888999999999999999988874
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=326.09 Aligned_cols=417 Identities=23% Similarity=0.264 Sum_probs=181.1
Q ss_pred CCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCE
Q 045323 107 MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEE 186 (740)
Q Consensus 107 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~ 186 (740)
.++|++|++++|.+ +.+|. .++++++|++|++++|.+.+..|..++++++|+.+++.+|.. .++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSE
T ss_pred cccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCE
Confidence 46777777777777 46775 677777777777777777777777777766653333332210 12333
Q ss_pred EeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCC
Q 045323 187 LWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 187 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 266 (740)
|++++|.+++ ++. + ..+|+.|++++|.+.+ +|.. .++|++|++++|.
T Consensus 76 L~l~~~~l~~-lp~--------------------------~--~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~ 122 (454)
T 1jl5_A 76 LELNNLGLSS-LPE--------------------------L--PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNN 122 (454)
T ss_dssp EECTTSCCSC-CCS--------------------------C--CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred EEecCCcccc-CCC--------------------------C--cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCc
Confidence 4444433321 000 0 0022222222222222 1211 1345555555554
Q ss_pred CCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCC
Q 045323 267 LTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIP 346 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 346 (740)
+.+ ++. .. ++|++|++++|.++ .+| .+. .+++|++|++++|.+++ +|
T Consensus 123 l~~-l~~----~~------------------------~~L~~L~L~~n~l~-~lp-~~~-~l~~L~~L~l~~N~l~~-lp 169 (454)
T 1jl5_A 123 LKA-LSD----LP------------------------PLLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLKK-LP 169 (454)
T ss_dssp CSC-CCS----CC------------------------TTCCEEECCSSCCS-SCC-CCT-TCTTCCEEECCSSCCSC-CC
T ss_pred cCc-ccC----CC------------------------CCCCEEECcCCCCC-CCc-ccC-CCCCCCEEECCCCcCcc-cC
Confidence 442 221 01 34555555555554 244 222 24555555555555542 23
Q ss_pred CCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCC
Q 045323 347 SSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRL 426 (740)
Q Consensus 347 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~ 426 (740)
..+ .+|++|++++|.+.+ .+ .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+. .+| .+
T Consensus 170 ~~~--------~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~ 233 (454)
T 1jl5_A 170 DLP--------PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-EL 233 (454)
T ss_dssp CCC--------TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CC
T ss_pred CCc--------ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-cc
Confidence 221 146666666666664 23 45666667777777666654 2221 146777777777666 444 36
Q ss_pred CCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCC
Q 045323 427 GNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNI 506 (740)
Q Consensus 427 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 506 (740)
..+++|++|++++|.+++ +|. .+++|++|++++|.+.+ ++.. +++|+.|++++|++++.
T Consensus 234 ~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l-------------- 292 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGL-------------- 292 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEE--------------
T ss_pred CCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCcc--------------
Confidence 667777777777776664 222 23567777777777664 2221 35666677666665421
Q ss_pred CcccCCCCCCcEEecccCcccccCCccccCC-CCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchh
Q 045323 507 PDWMNRLPQLRYLILANNGLEGEMPLQLCWL-NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQ 585 (740)
Q Consensus 507 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 585 (740)
+. -.++|+.|++++|.+++. + .+ ++|+.|++++|.+.+ +|..
T Consensus 293 ~~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---------------------------- 335 (454)
T 1jl5_A 293 SE---LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---------------------------- 335 (454)
T ss_dssp SC---CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred cC---cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc----------------------------
Confidence 11 014677777777766632 1 22 467777777776653 2221
Q ss_pred hHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcc--cCCccccC
Q 045323 586 LQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG--ESPVTFSH 663 (740)
Q Consensus 586 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~l~~ 663 (740)
+++|+.|++++|+++ .+|. .+++|++|+|++|++++ .+|..+..
T Consensus 336 ------------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 336 ------------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp ------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred ------------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 136677777777776 3444 35677777777777775 34444332
Q ss_pred CCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccC--CCCcccCCCCccccccccCCCCCC
Q 045323 664 MKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGK--TPDRVAQFGTFEEDSYEGNPFLCG 728 (740)
Q Consensus 664 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~--~~~~~~~~~~l~~l~l~~Np~~c~ 728 (740)
| +.|...+.+|.. +++|+.|++++|++++. +| ++++.+.+.+|.+.|.
T Consensus 382 ------L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 382 ------L--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDP 431 (454)
T ss_dssp ------E--ECCC------------------------------------------------------
T ss_pred ------h--hhcccccccccc---cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCc
Confidence 2 234444455542 36788888888888763 33 3456666777766654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=325.88 Aligned_cols=305 Identities=19% Similarity=0.187 Sum_probs=236.7
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.+++|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 46666666666665555566666667777777776666666666666777777777776665545556667777777777
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCC-CCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCc
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS-CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLR 517 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~ 517 (740)
+|.+....+..|..+++|++|++++|.+.+..+. +..+++|+.|++++|++++ ..+..+..+++|+
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~l~~l~~L~ 179 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-------------IPTEALSHLHGLI 179 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-------------CCHHHHTTCTTCC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-------------cChhHhcccCCCc
Confidence 7776666666667777777777777776655443 3336677777777766542 2335678889999
Q ss_pred EEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccc
Q 045323 518 YLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHK 597 (740)
Q Consensus 518 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 597 (740)
.|++++|.+.+..+..+..+++|+.|++++|+..+.+|.....
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------------------- 222 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------------------------------------- 222 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-------------------------------------
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-------------------------------------
Confidence 9999999998877778999999999999998876555432211
Q ss_pred eeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045323 598 YLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677 (740)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l 677 (740)
..+|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 223 ------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 223 ------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp ------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred ------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 12799999999999866667899999999999999999988888999999999999999999
Q ss_pred CccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 678 NGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 678 ~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|||.|+|.+
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 998899999999999999999999999888889999999999999999999975
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=308.48 Aligned_cols=400 Identities=24% Similarity=0.308 Sum_probs=224.0
Q ss_pred CCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCcc
Q 045323 131 ELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLK 210 (740)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 210 (740)
+..+|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|. .++.+.+|+.+++..|...
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~--------------- 71 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDR--------------- 71 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHH---------------
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhcc---------------
Confidence 346777777777777 46676777777777777777776666666 5666666666555554321
Q ss_pred EEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCC
Q 045323 211 FFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNI 290 (740)
Q Consensus 211 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 290 (740)
+++.|++++|.+++ +|. ..++|++|++++|
T Consensus 72 ---------------------~l~~L~l~~~~l~~-------------------------lp~----~~~~L~~L~l~~n 101 (454)
T 1jl5_A 72 ---------------------QAHELELNNLGLSS-------------------------LPE----LPPHLESLVASCN 101 (454)
T ss_dssp ---------------------TCSEEECTTSCCSC-------------------------CCS----CCTTCSEEECCSS
T ss_pred ---------------------CCCEEEecCCcccc-------------------------CCC----CcCCCCEEEccCC
Confidence 34445555544443 222 1234444444444
Q ss_pred cccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCC
Q 045323 291 SLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSL 370 (740)
Q Consensus 291 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 370 (740)
.+.+ +|.. .++|++|++++|.++ .++.. .++|++|++++|.+++ +| .+..+. +|++|++++|.+
T Consensus 102 ~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~-----~L~~L~l~~N~l 165 (454)
T 1jl5_A 102 SLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSS-----FLKIIDVDNNSL 165 (454)
T ss_dssp CCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCT-----TCCEEECCSSCC
T ss_pred cCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCC-----CCCEEECCCCcC
Confidence 4433 2221 256777777777776 34321 2588888888888875 55 455544 788888888888
Q ss_pred CCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhh
Q 045323 371 QGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAF 450 (740)
Q Consensus 371 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 450 (740)
++ .+.. .++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.++ .+| .+
T Consensus 166 ~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~ 233 (454)
T 1jl5_A 166 KK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-EL 233 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CC
T ss_pred cc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-cc
Confidence 75 3332 2578888888888775 44 47788888888888888774 3332 257888888888877 445 37
Q ss_pred cCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccC
Q 045323 451 CQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530 (740)
Q Consensus 451 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 530 (740)
..+++|++|++++|++.+ ++. .+++|+.|++++|++++ +|.. .++|++|++++|.+++.
T Consensus 234 ~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~--------------l~~~---~~~L~~L~ls~N~l~~l- 292 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTD--------------LPEL---PQSLTFLDVSENIFSGL- 292 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSC--------------CCCC---CTTCCEEECCSSCCSEE-
T ss_pred CCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccc--------------cCcc---cCcCCEEECcCCccCcc-
Confidence 788888888888888774 332 24678888888777652 2322 36788888888877742
Q ss_pred CccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccce
Q 045323 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYT 610 (740)
Q Consensus 531 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 610 (740)
+. ..++|+.|++++|.+.+ ++.
T Consensus 293 ~~---~~~~L~~L~l~~N~l~~-i~~------------------------------------------------------ 314 (454)
T 1jl5_A 293 SE---LPPNLYYLNASSNEIRS-LCD------------------------------------------------------ 314 (454)
T ss_dssp SC---CCTTCCEEECCSSCCSE-ECC------------------------------------------------------
T ss_pred cC---cCCcCCEEECcCCcCCc-ccC------------------------------------------------------
Confidence 21 12577888888877652 110
Q ss_pred eecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc--cCCcccccC
Q 045323 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG--KIPPRLIEL 688 (740)
Q Consensus 611 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l 688 (740)
..++|+.|++++|++.+ +|.. +++|++|+|++|++++ +|. .+++|++|++++|++++ .+|..+..
T Consensus 315 ----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~- 381 (454)
T 1jl5_A 315 ----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED- 381 (454)
T ss_dssp ----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-
T ss_pred ----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh-
Confidence 11367888888888874 5543 5788888888888883 444 36788888888888886 45554432
Q ss_pred CcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 689 NALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 689 ~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
++.|.+.+.+|. .+++|++|++++|++..
T Consensus 382 -------L~~n~~~~~i~~---~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 -------LRMNSHLAEVPE---LPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -------EECCC---------------------------
T ss_pred -------hhhccccccccc---ccCcCCEEECCCCcCCc
Confidence 345666666665 35889999999999875
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=310.28 Aligned_cols=247 Identities=19% Similarity=0.224 Sum_probs=145.1
Q ss_pred CEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccE
Q 045323 283 KRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEY 362 (740)
Q Consensus 283 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~ 362 (740)
+.++.++..+.. +|..+ .++++.|++++|.+++..+..+. .+++|++|++++|.+.+..|..|..+. +|++
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~~ 84 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLF-----NLRT 84 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCT-----TCCE
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCc-----cCCE
Confidence 455555554432 33322 24677777777777643333333 367777777777777766666666544 6777
Q ss_pred EEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcC
Q 045323 363 LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRL 442 (740)
Q Consensus 363 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 442 (740)
|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 77777777765555566677777777777777766666677777777777777777666666677777777777777777
Q ss_pred cCCchhhhcCCCCCCEEECCCCcCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEec
Q 045323 443 EGPIPSAFCQLRHLEILDLSRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLIL 521 (740)
Q Consensus 443 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 521 (740)
+...+..+.++++|+.|++++|.+.+..+.. ..+++|+.|++++|.+.+ .++.......+|++|++
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~-------------~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-------------TMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC-------------EECTTTTTTCCCSEEEE
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc-------------ccCcccccCccccEEEC
Confidence 7666666777777777777777666443322 224455555555443321 11222222234555555
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcCc
Q 045323 522 ANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 522 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
++|.++...+..+..+++|+.|++++|++.
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 555444322233444445555555544443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-33 Score=300.74 Aligned_cols=348 Identities=22% Similarity=0.326 Sum_probs=277.3
Q ss_pred CCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCc
Q 045323 253 HQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLV 332 (740)
Q Consensus 253 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~ 332 (740)
.+++++.|+++++.+. .+|. +..+++|++|++++|.+....+ +..+++|++|++++|.++ .++. +. .+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCC
Confidence 3568999999999887 4665 4688999999999998876544 888999999999999998 4444 33 489999
Q ss_pred EEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEe
Q 045323 333 VLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLY 412 (740)
Q Consensus 333 ~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 412 (740)
+|++++|.+.+..+ +.. +++|++|++++|.+.+. ..+..+++|+.|+++ +.+.+.. .+..+++|++|+
T Consensus 116 ~L~L~~n~l~~~~~--~~~-----l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~ 183 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKN-----LTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLD 183 (466)
T ss_dssp EEECCSSCCCCCGG--GTT-----CTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEE
T ss_pred EEECCCCCCCCChH--HcC-----CCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEE
Confidence 99999998875432 444 34899999999988863 247788999999996 4443332 377889999999
Q ss_pred CCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCc
Q 045323 413 ISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGP 492 (740)
Q Consensus 413 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 492 (740)
+++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++.+..+++|+.|++++|.+++.
T Consensus 184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCC
T ss_pred CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccc
Confidence 999988753 457888999999999999886655 6778999999999998874 45555688999999999887632
Q ss_pred CccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCc
Q 045323 493 LLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDL 572 (740)
Q Consensus 493 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~ 572 (740)
+. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..|
T Consensus 259 --------------~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------------- 304 (466)
T 1o6v_A 259 --------------AP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----------------- 304 (466)
T ss_dssp --------------GG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-----------------
T ss_pred --------------hh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-----------------
Confidence 22 6778999999999999885443 7788999999999998764222
Q ss_pred cCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCc
Q 045323 573 FDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNN 652 (740)
Q Consensus 573 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~ 652 (740)
+..+++|+.|++++|++.+..| +..+++|++|++++|+
T Consensus 305 ----------------------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 305 ----------------------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp ----------------------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC
T ss_pred ----------------------------------------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc
Confidence 2344589999999999986655 7889999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCC
Q 045323 653 LTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKT 705 (740)
Q Consensus 653 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~ 705 (740)
+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.+
T Consensus 343 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 343 VSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred cCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 9865 467889999999999999997666 788999999999999998753
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=297.50 Aligned_cols=345 Identities=26% Similarity=0.334 Sum_probs=285.6
Q ss_pred CccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEE
Q 045323 230 KFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVL 309 (740)
Q Consensus 230 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L 309 (740)
..+++.|++.++.+... + .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+....+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 34899999999988763 4 47889999999999999985 444 4789999999999999876554 8899999999
Q ss_pred EccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeec
Q 045323 310 DVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNL 389 (740)
Q Consensus 310 ~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 389 (740)
++++|.++ .++. + ..+++|++|++++|.+.+. + .+.. +++|++|+++ +.+.+.. .+..+++|+.|++
T Consensus 118 ~L~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~-~-~~~~-----l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l 184 (466)
T 1o6v_A 118 TLFNNQIT-DIDP-L-KNLTNLNRLELSSNTISDI-S-ALSG-----LTSLQQLSFG-NQVTDLK--PLANLTTLERLDI 184 (466)
T ss_dssp ECCSSCCC-CCGG-G-TTCTTCSEEEEEEEEECCC-G-GGTT-----CTTCSEEEEE-ESCCCCG--GGTTCTTCCEEEC
T ss_pred ECCCCCCC-CChH-H-cCCCCCCEEECCCCccCCC-h-hhcc-----CCcccEeecC-CcccCch--hhccCCCCCEEEC
Confidence 99999998 4554 3 4489999999999998753 2 3444 3489999997 4454332 3788999999999
Q ss_pred CCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCccc
Q 045323 390 DGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGS 469 (740)
Q Consensus 390 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 469 (740)
++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 99998754 347888999999999999986544 77899999999999999854 4688999999999999999865
Q ss_pred CCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCc
Q 045323 470 LPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549 (740)
Q Consensus 470 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 549 (740)
.+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|+
T Consensus 259 ~~-~~~l~~L~~L~l~~n~l~~--------------~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 259 AP-LSGLTKLTELKLGANQISN--------------ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp GG-GTTCTTCSEEECCSSCCCC--------------CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred hh-hhcCCCCCEEECCCCccCc--------------ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 44 6679999999999998863 223 7789999999999999986544 7889999999999999
Q ss_pred CcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcc
Q 045323 550 LSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL 629 (740)
Q Consensus 550 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 629 (740)
+.+..| + ..+++|+.|++++|++
T Consensus 321 l~~~~~--~-------------------------------------------------------~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 321 ISDISP--V-------------------------------------------------------SSLTKLQRLFFYNNKV 343 (466)
T ss_dssp CSCCGG--G-------------------------------------------------------GGCTTCCEEECCSSCC
T ss_pred CCCchh--h-------------------------------------------------------ccCccCCEeECCCCcc
Confidence 875433 1 2345899999999999
Q ss_pred cccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc
Q 045323 630 IGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 630 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
.+. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 344 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 344 SDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 854 468999999999999999998777 7899999999999999995
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=294.01 Aligned_cols=317 Identities=22% Similarity=0.219 Sum_probs=187.5
Q ss_pred hhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCC
Q 045323 102 QMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNL 181 (740)
Q Consensus 102 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l 181 (740)
..++.+++|++|++++|.+. .+| .+..+++|++|++++|.+++. + ++.+++|++|++++|++++ ++ +..+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l 105 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPL 105 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTC
T ss_pred cChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCC
Confidence 34566788888888888877 454 578888888888888888764 3 7788888888888888766 32 6778
Q ss_pred CCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEE
Q 045323 182 TYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVD 261 (740)
Q Consensus 182 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 261 (740)
++|++|++++|.+++ ++ ++.+++|++|+
T Consensus 106 ~~L~~L~L~~N~l~~-l~---------------------------------------------------~~~l~~L~~L~ 133 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD---------------------------------------------------VSQNPLLTYLN 133 (457)
T ss_dssp TTCCEEECCSSCCSC-CC---------------------------------------------------CTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCe-ec---------------------------------------------------CCCCCcCCEEE
Confidence 888888888877652 11 23334455555
Q ss_pred cCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcc
Q 045323 262 LSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341 (740)
Q Consensus 262 L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~ 341 (740)
+++|++.+ ++ +..+++|++|++++|...+.. .+..+++|++|++++|.++ .+| + ..+++|+.|++++|.+
T Consensus 134 l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~--l-~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 134 CARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD--V-SQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC--C-TTCTTCCEEECCSSCC
T ss_pred CCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eec--c-ccCCCCCEEECcCCcC
Confidence 55554443 22 234455555555555332222 2445556666666666655 233 2 2245666666666655
Q ss_pred cccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccC
Q 045323 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN 421 (740)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~ 421 (740)
++. .+.. +++|++|++++|.+++ +| +..+++|+.|++++|++.+.. +..+++|+.|+++++
T Consensus 204 ~~~---~l~~-----l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n----- 264 (457)
T 3bz5_A 204 TKL---DLNQ-----NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT----- 264 (457)
T ss_dssp SCC---CCTT-----CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-----
T ss_pred Cee---cccc-----CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-----
Confidence 532 1222 2256666666666665 22 555666666666666665432 234455666665543
Q ss_pred CCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCc
Q 045323 422 IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNR 501 (740)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~ 501 (740)
+|+.|++++|.+.+..| +..+++|+.|++++|...+.++. ...+|+.++
T Consensus 265 ---------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~------------------ 313 (457)
T 3bz5_A 265 ---------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELD------------------ 313 (457)
T ss_dssp ---------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCC------------------
T ss_pred ---------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--CCCcceEec------------------
Confidence 23445555565544444 34566677777766665444332 122233222
Q ss_pred CCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCc
Q 045323 502 LNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 502 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
+..+++|++|++++|++++. + +..+++|+.|++++|+++
T Consensus 314 --------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 314 --------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp --------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred --------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 33446778888888888763 2 677788888888888775
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=294.05 Aligned_cols=335 Identities=19% Similarity=0.215 Sum_probs=216.5
Q ss_pred CCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCC
Q 045323 303 HKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLT 382 (740)
Q Consensus 303 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 382 (740)
+++++.|+++++.++ .+|..++..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+..+..+..++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-----TIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCC-----CcCEEECCCCCCCcCCHHHhcCCC
Confidence 578889999999887 77877766688999999999888866666666654 788888888888877777778888
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
+|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++... +..+++|+.|+++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 194 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecc
Confidence 8888888888887555555677888888888888888766777888888888888888877542 4556778888888
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
+|.+.+. ..+++|+.|++++|.++.. +. ...++|+.|++++|.+++. ..+..+++|+.
T Consensus 195 ~n~l~~~----~~~~~L~~L~l~~n~l~~~--------------~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 252 (390)
T 3o6n_A 195 YNLLSTL----AIPIAVEELDASHNSINVV--------------RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVE 252 (390)
T ss_dssp SSCCSEE----ECCSSCSEEECCSSCCCEE--------------EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred ccccccc----CCCCcceEEECCCCeeeec--------------cc--cccccccEEECCCCCCccc--HHHcCCCCccE
Confidence 8776532 1234566666666665421 11 1135566666666666532 34555666666
Q ss_pred EEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEE
Q 045323 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622 (740)
Q Consensus 543 L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 622 (740)
|++++|.+.+..|..+.. +++|+.|
T Consensus 253 L~Ls~n~l~~~~~~~~~~-------------------------------------------------------l~~L~~L 277 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVK-------------------------------------------------------MQRLERL 277 (390)
T ss_dssp EECCSSCCCEEESGGGTT-------------------------------------------------------CSSCCEE
T ss_pred EECCCCcCCCcChhHccc-------------------------------------------------------cccCCEE
Confidence 666666655433333222 2356666
Q ss_pred EcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccc
Q 045323 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 623 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
++++|++.+ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.. + +..+++|+.|++++|++.
T Consensus 278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 666666652 3444455566666666666665 3444455556666666666666533 2 444556666666666665
Q ss_pred cCCCCcccCCCCccccccccCCCCCCcC
Q 045323 703 GKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 703 ~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
..... ..+..+....+.+++..|.++
T Consensus 353 ~~~~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 353 CNSLR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred chhHH--HHHHHHHhhcccccCceeccc
Confidence 43221 233444555555666666554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=291.86 Aligned_cols=313 Identities=19% Similarity=0.174 Sum_probs=256.6
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCC
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 407 (740)
+++++.+++.++.+....+..+..+. +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccc-----cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 57899999999988754433345444 7999999999998777778889999999999999998888888889999
Q ss_pred CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCC
Q 045323 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 408 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 487 (740)
|++|++++|.+....+..|..+++|++|++++|.++...+..+.++++|++|++++|.+++. ....+++|+.+++++|
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc
Confidence 99999999999865555678899999999999999888888899999999999999998754 2345788999999988
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccccc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRE 567 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~ 567 (740)
.+++ +...++|++|++++|.+... +. ...++|+.|++++|.+.+. ..
T Consensus 197 ~l~~------------------~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~---------- 243 (390)
T 3o6n_A 197 LLST------------------LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AW---------- 243 (390)
T ss_dssp CCSE------------------EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GG----------
T ss_pred cccc------------------cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HH----------
Confidence 7652 22346799999999998854 32 2357899999999987632 11
Q ss_pred CCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEE
Q 045323 568 DNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLN 647 (740)
Q Consensus 568 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 647 (740)
+..+++|+.|++++|++.+..|..|..+++|++|+
T Consensus 244 ---------------------------------------------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 244 ---------------------------------------------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp ---------------------------------------------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ---------------------------------------------HcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 23445899999999999988888999999999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 648 LSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 648 L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
|++|++++ +|..+..+++|++|++++|+++ .+|+.+..+++|+.|++++|+++... +..+++|++|++++|||.|
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 99999985 4556678899999999999998 67777888999999999999998663 5678899999999999999
Q ss_pred CcC
Q 045323 728 GQP 730 (740)
Q Consensus 728 ~~~ 730 (740)
+|.
T Consensus 354 ~~~ 356 (390)
T 3o6n_A 354 NSL 356 (390)
T ss_dssp HHH
T ss_pred hhH
Confidence 874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=282.60 Aligned_cols=284 Identities=25% Similarity=0.355 Sum_probs=176.7
Q ss_pred CCCcHHHHHHHHHHhhc---------CC-CCCCcc--ccceEecCCC--CceEEEECCCCCCCCCCCccccccccccccc
Q 045323 6 EGCLEQEGYALLKLKHD---------FF-NNHCCQ--WACVECNTTT--GKVISLDLDGTRKLGDGEGYLNASLFTSFQQ 71 (740)
Q Consensus 6 ~~~~~~~~~~~~~~~~~---------~~-~~~~c~--~~~~~c~~~~--~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~ 71 (740)
+.|.+.|..|+++||++ |. ..+||. |.||.|...+ ++|+.++++++.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l------------------ 62 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL------------------ 62 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC------------------
T ss_pred CCCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCc------------------
Confidence 46999999999999987 76 678998 9999998654 7899999988766
Q ss_pred cceeeCCCCCCCCCcEEeCCCCCCcCc--ccchhcccCCCCCEEECCC-CCCCCccChhhhcCCCCCCEEEccCCccccc
Q 045323 72 LELLDLSILNFKNLEYFNMDFCTAFSN--SFLQMSELMASLKYLSLSN-SYLNGTILDQGLCELVYLQEVNIDRNNLSGS 148 (740)
Q Consensus 72 L~~Ldls~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 148 (740)
.+ .+|..+..+++|++|++++ |.+.+.+|. .|.++++|++|++++|.+++.
T Consensus 63 -------------------------~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 63 -------------------------PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp -------------------------SSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEE
T ss_pred -------------------------cCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCc
Confidence 22 3445566677777777773 666655654 677777777777777777766
Q ss_pred ccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCC
Q 045323 149 LPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLT 228 (740)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 228 (740)
.|..|.++++|++|++++|.+++.+|. .+..+++|++|++++|.+.+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~------------------------------- 164 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGA------------------------------- 164 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEE-------------------------------
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCc-------------------------------
Confidence 777777777777777777777665555 566677777777777665422
Q ss_pred CCccccEEEecCCCCCCCCChhhcCCC-CCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCC
Q 045323 229 PKFQLTSISLFGHGDSGIFPKFLYHQH-DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLR 307 (740)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~ 307 (740)
+|..+..++ +|++|++++|.+.+.+|..+ ..++ |++|++++|.+....+..+..+++|+
T Consensus 165 ------------------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 165 ------------------IPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp ------------------CCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred ------------------CCHHHhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence 233344444 56666666666555555543 3333 55555555555544455555555666
Q ss_pred EEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCee
Q 045323 308 VLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRL 387 (740)
Q Consensus 308 ~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 387 (740)
.|++++|.+++..|. + ..++ +|++|++++|.+++..|..+..+++|++|
T Consensus 225 ~L~L~~N~l~~~~~~-~-~~l~-----------------------------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-V-GLSK-----------------------------NLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp EEECCSSEECCBGGG-C-CCCT-----------------------------TCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred EEECCCCceeeecCc-c-cccC-----------------------------CCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 666666655433222 1 1133 44555555555544444455555555555
Q ss_pred ecCCCcceecCCcCCCCCCCCceEeCCCcc
Q 045323 388 NLDGNHFIGDIPKTLSNCSALQGLYISDNN 417 (740)
Q Consensus 388 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 417 (740)
++++|++++.+|.. ..+++|+.+++++|+
T Consensus 274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55555555555543 445555555555554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=305.49 Aligned_cols=334 Identities=19% Similarity=0.212 Sum_probs=203.9
Q ss_pred CCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCC
Q 045323 303 HKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLT 382 (740)
Q Consensus 303 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 382 (740)
+.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+. +|++|++++|.+.+..+..+..++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-----TIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-----CCCEEECCCCcCCCCCHHHHcCCC
Confidence 467888889888887 67777666688888888888888876666776654 788888888888877777777888
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
+|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++.. +..+++|+.|+++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence 8888888888877665556677788888888888887777777778888888888888777542 4456777777777
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
+|.+.+. ..+++|+.|++++|.++.. +.. ..++|+.|++++|.+++ +..+..+++|+.
T Consensus 201 ~n~l~~l----~~~~~L~~L~ls~n~l~~~--------------~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~ 258 (597)
T 3oja_B 201 YNLLSTL----AIPIAVEELDASHNSINVV--------------RGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVE 258 (597)
T ss_dssp SSCCSEE----ECCTTCSEEECCSSCCCEE--------------ECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSE
T ss_pred cCccccc----cCCchhheeeccCCccccc--------------ccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCE
Confidence 7766532 1234566666666655321 111 12455556666655553 234555555555
Q ss_pred EEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEE
Q 045323 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622 (740)
Q Consensus 543 L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 622 (740)
|++++|.+.+..|..+.. +++|+.|
T Consensus 259 L~Ls~N~l~~~~~~~~~~-------------------------------------------------------l~~L~~L 283 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVK-------------------------------------------------------MQRLERL 283 (597)
T ss_dssp EECCSSCCCEEESGGGTT-------------------------------------------------------CSSCCEE
T ss_pred EECCCCccCCCCHHHhcC-------------------------------------------------------ccCCCEE
Confidence 555555555443333222 2255555
Q ss_pred EcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccc
Q 045323 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 623 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
++++|.+.+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. | +..+++|+.|++++|++.
T Consensus 284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 555555543 3444444555555555555555 3444445555555555555555532 1 334445555555555554
Q ss_pred cCCCCcccCCCCccccccccCCCCCCc
Q 045323 703 GKTPDRVAQFGTFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 703 ~~~~~~~~~~~~l~~l~l~~Np~~c~~ 729 (740)
+.... ..+..+....+.+++..|..
T Consensus 359 ~~~~~--~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 359 CNSLR--ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp HHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred ChhHH--HHHHHHhhhccccccccCCc
Confidence 43221 22333444444555555543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=291.70 Aligned_cols=360 Identities=18% Similarity=0.158 Sum_probs=218.8
Q ss_pred ChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhc
Q 045323 248 PKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEV 327 (740)
Q Consensus 248 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 327 (740)
+..++.+++|++|++++|.+.+ +|. +..+++|++|++++|.+... .+..+++|++|++++|.+++ ++ +. .
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~~-~ 104 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--VT-P 104 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-T
T ss_pred ccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--cC-C
Confidence 3445556666666666666653 342 34566666666666665442 25566666666666666653 33 22 2
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCC
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 407 (740)
+++|++|++++|.+++. + +..+ ++|++|++++|.+++. .+..+++|++|++++|+..+.+ .+..+++
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l-----~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQN-----PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTC-----TTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred CCcCCEEECCCCcCCee-c--CCCC-----CcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 56666666666666542 2 3332 2566666666666652 2455666666666666443333 2455666
Q ss_pred CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCC
Q 045323 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 408 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 487 (740)
|++|++++|.+++ ++ +..+++|+.|++++|.+++. .+..+++|++|++++|++.+ +| +..+++|+.|++++|
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCC
Confidence 6666666666664 22 55666666666666666643 25566666666666666664 33 444666666666666
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccccc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRE 567 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~ 567 (740)
++++.....+. .+....-...+|+.|++++|.+.+..| +..+++|+.|++++|+..+.+|.....+.
T Consensus 244 ~l~~~~~~~l~------~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~----- 310 (457)
T 3bz5_A 244 PLTELDVSTLS------KLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT----- 310 (457)
T ss_dssp CCSCCCCTTCT------TCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS-----
T ss_pred cCCCcCHHHCC------CCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcce-----
Confidence 65532110000 000000011245556666666554444 45678888888888877665553222211
Q ss_pred CCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEE
Q 045323 568 DNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLN 647 (740)
Q Consensus 568 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 647 (740)
. ..+..+++|+.|++++|++++. + +..+++|+.|+
T Consensus 311 --------------------~----------------------L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 311 --------------------E----------------------LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLS 345 (457)
T ss_dssp --------------------C----------------------CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred --------------------E----------------------echhhcccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence 1 1133456899999999999874 3 88999999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcc
Q 045323 648 LSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRV 709 (740)
Q Consensus 648 L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~ 709 (740)
+++|++++ ++.|+.|++++|.+.+. ..+..|..+++++|+++|.+|..+
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 99999985 35677888999999865 355678899999999999988653
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=283.08 Aligned_cols=259 Identities=31% Similarity=0.542 Sum_probs=189.1
Q ss_pred CCCeeecCCCccee--cCCcCCCCCCCCceEeCCC-cccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEE
Q 045323 383 KLKRLNLDGNHFIG--DIPKTLSNCSALQGLYISD-NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEIL 459 (740)
Q Consensus 383 ~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 459 (740)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444443 3444444444444444442 44444444444444444444444444444444444444455555
Q ss_pred ECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCC-
Q 045323 460 DLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLN- 538 (740)
Q Consensus 460 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~- 538 (740)
++++|.+. +.+|..+..+++|++|++++|.+++..|..+..++
T Consensus 131 ~Ls~N~l~------------------------------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 174 (313)
T 1ogq_A 131 DFSYNALS------------------------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174 (313)
T ss_dssp ECCSSEEE------------------------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred eCCCCccC------------------------------------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhh
Confidence 44444433 24456677788888888888888877888888887
Q ss_pred CCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCC
Q 045323 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHS 618 (740)
Q Consensus 539 ~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (740)
+|+.|++++|.+.+.+|..+.. + .
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------------------l-~ 198 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFAN-------------------------------------------------------L-N 198 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGG-------------------------------------------------------C-C
T ss_pred cCcEEECcCCeeeccCChHHhC-------------------------------------------------------C-c
Confidence 8899999999887666654332 2 2
Q ss_pred ccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccC
Q 045323 619 MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAF 698 (740)
Q Consensus 619 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 698 (740)
|+.|++++|++.+..|..|..+++|++|+|++|++++..|. +..+++|++|++++|++++.+|..+..+++|+.|++++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 88899999999988999999999999999999999976666 78899999999999999999999999999999999999
Q ss_pred cccccCCCCcccCCCCccccccccCCCCCCcCCCCCCC
Q 045323 699 NNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCN 736 (740)
Q Consensus 699 N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~~~~~ 736 (740)
|++++.+|.. +.+++|+.+++++||+.|+.|+. +|+
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred CcccccCCCC-ccccccChHHhcCCCCccCCCCC-CCC
Confidence 9999999996 88999999999999999998876 574
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=297.88 Aligned_cols=313 Identities=19% Similarity=0.182 Sum_probs=250.7
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCC
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 407 (740)
+++++.+++.+|.+....+..+..+. +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCC-----CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 56888999998888754444455443 7999999999988777778888899999999999988887878888899
Q ss_pred CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCC
Q 045323 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 408 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 487 (740)
|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+.+. ....+++|+.|++++|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 202 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccC
Confidence 99999999998866666678899999999999999888888888899999999999988754 2344778899999888
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccccc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRE 567 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~ 567 (740)
.+++ +...++|+.|++++|.+....+. + .++|+.|++++|.+.+. ..
T Consensus 203 ~l~~------------------l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~---------- 249 (597)
T 3oja_B 203 LLST------------------LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AW---------- 249 (597)
T ss_dssp CCSE------------------EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GG----------
T ss_pred cccc------------------ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hh----------
Confidence 7652 23346789999999988744322 2 36899999999987631 11
Q ss_pred CCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEE
Q 045323 568 DNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLN 647 (740)
Q Consensus 568 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 647 (740)
+..+++|+.|++++|.+.+..|..|..+++|+.|+
T Consensus 250 ---------------------------------------------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 250 ---------------------------------------------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp ---------------------------------------------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ---------------------------------------------hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 23345888999999999888888899999999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 648 LSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 648 L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.. +..+++|+.|++++|||.|
T Consensus 285 Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 285 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 99999985 4666677889999999999998 67778888899999999999988663 4677889999999999998
Q ss_pred CcC
Q 045323 728 GQP 730 (740)
Q Consensus 728 ~~~ 730 (740)
+|.
T Consensus 360 ~~~ 362 (597)
T 3oja_B 360 NSL 362 (597)
T ss_dssp HHH
T ss_pred hhH
Confidence 874
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=270.81 Aligned_cols=304 Identities=22% Similarity=0.345 Sum_probs=163.2
Q ss_pred CCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCC
Q 045323 302 CHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNL 381 (740)
Q Consensus 302 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 381 (740)
.+++|++|+++++.+. .++. +. .+++|++|++++|.+++..+ +..+ ++|++|++++|.+.+. ..+..+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l-----~~L~~L~L~~n~i~~~--~~~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNL-----VKLTNLYIGTNKITDI--SALQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTC-----TTCCEEECCSSCCCCC--GGGTTC
T ss_pred hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcC-----CcCCEEEccCCcccCc--hHHcCC
Confidence 4455666666666655 3332 22 25555555555555543221 2222 2455555555555432 234445
Q ss_pred CCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEEC
Q 045323 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDL 461 (740)
Q Consensus 382 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 461 (740)
++|++|++++|.+.+..+ +..+++|+.|++++|..... ...+..+++|++|++++|.+....+ +..+++|++|++
T Consensus 110 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp TTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred CcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 555555555555443221 44445555555555533322 1224444445555555444443222 344444444444
Q ss_pred CCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCC
Q 045323 462 SRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQ 541 (740)
Q Consensus 462 ~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 541 (740)
++|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 185 ~~n~l~~-------------------------------------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 224 (347)
T 4fmz_A 185 NYNQIED-------------------------------------ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLN 224 (347)
T ss_dssp TTSCCCC-------------------------------------CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred cCCcccc-------------------------------------ccc-ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence 4444431 111 4455666666666666653322 55566666
Q ss_pred EEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccE
Q 045323 542 LVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSG 621 (740)
Q Consensus 542 ~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 621 (740)
.|++++|.+.+..+ +..+++|+.
T Consensus 225 ~L~l~~n~l~~~~~---------------------------------------------------------~~~l~~L~~ 247 (347)
T 4fmz_A 225 SLKIGNNKITDLSP---------------------------------------------------------LANLSQLTW 247 (347)
T ss_dssp EEECCSSCCCCCGG---------------------------------------------------------GTTCTTCCE
T ss_pred EEEccCCccCCCcc---------------------------------------------------------hhcCCCCCE
Confidence 66666666542111 123346666
Q ss_pred EEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCccc
Q 045323 622 LDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNL 701 (740)
Q Consensus 622 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 701 (740)
|++++|.+.+ + ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++
T Consensus 248 L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 248 LEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred EECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 6777666653 2 3466667777777777777643 3456677777777777777766666677777777777777777
Q ss_pred ccCCCCcccCCCCccccccccCCC
Q 045323 702 SGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 702 ~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
++..| ++.+++|+++++++|+.
T Consensus 324 ~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 324 TDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCCGG--GGGCTTCSEESSSCC--
T ss_pred ccccC--hhhhhccceeehhhhcc
Confidence 66655 56677777777777764
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=267.55 Aligned_cols=306 Identities=23% Similarity=0.315 Sum_probs=207.4
Q ss_pred hcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccc
Q 045323 277 EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWG 356 (740)
Q Consensus 277 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 356 (740)
..+++|++|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++ ++ .+..
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~----- 108 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-IS-ALQN----- 108 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-CG-GGTT-----
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-ch-HHcC-----
Confidence 5789999999999988653 2 4788999999999999998 5555 4448999999999999874 32 3444
Q ss_pred cCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEe
Q 045323 357 CFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIM 436 (740)
Q Consensus 357 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 436 (740)
+++|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 109 l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 4489999999999986543 7889999999999997665444 37889999999999999885433 88999999999
Q ss_pred CCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCC
Q 045323 437 MPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQL 516 (740)
Q Consensus 437 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L 516 (740)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~--------------~~~-~~~l~~L 245 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD--------------LSP-LANLSQL 245 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------CGG-GTTCTTC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC--------------Ccc-hhcCCCC
Confidence 99999986544 7889999999999998873322 3334445555554444431 111 3344444
Q ss_pred cEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhccccc
Q 045323 517 RYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596 (740)
Q Consensus 517 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 596 (740)
++|++++|.+++. ..+..++
T Consensus 246 ~~L~l~~n~l~~~--~~~~~l~---------------------------------------------------------- 265 (347)
T 4fmz_A 246 TWLEIGTNQISDI--NAVKDLT---------------------------------------------------------- 265 (347)
T ss_dssp CEEECCSSCCCCC--GGGTTCT----------------------------------------------------------
T ss_pred CEEECCCCccCCC--hhHhcCC----------------------------------------------------------
Confidence 4444444444321 2233444
Q ss_pred ceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCc
Q 045323 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676 (740)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~ 676 (740)
+|+.|++++|++.+. ..+..+++|++|+|++|++++..+..++.+++|+.|++++|+
T Consensus 266 ---------------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 266 ---------------------KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ---------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ---------------------CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 455555555555422 235555666666666666655555555556666666666666
Q ss_pred cCccCCcccccCCcCceeeccCcccc
Q 045323 677 LNGKIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 677 l~~~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
+++..| +..+++|+.|++++|+++
T Consensus 323 l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccccC--hhhhhccceeehhhhccc
Confidence 654333 555566666666666553
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=260.35 Aligned_cols=195 Identities=25% Similarity=0.308 Sum_probs=110.9
Q ss_pred CCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCc
Q 045323 330 NLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQ 409 (740)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 409 (740)
+++.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~-------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS-------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC-------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCcc-ccCCCCC-------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 4566666666555 3443332 1567777777776655555666777777777777777766666677777777
Q ss_pred eEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcc--cCCCCCCCCcccEEEcCCC
Q 045323 410 GLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG--SLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 410 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n 487 (740)
+|++++|.+. .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.+.. ..+......+|+.|++++|
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n 182 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSS
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCC
Confidence 7777777776 3443333 677777777777776666667777777777777777642 2222222114444444444
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
++++ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 183 ~l~~--------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 183 KLTG--------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp BCSS--------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred CCCc--------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 4431 122111 34555555555554444344444444444444444443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=255.19 Aligned_cols=269 Identities=19% Similarity=0.220 Sum_probs=158.8
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.+++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 5666666666666555556666777777777777776666666777777777777777776 3343332 677777777
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcE
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 518 (740)
+|.++...+..|.++++|++|++++|.+... +..+..+..+++|++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------------------~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------------------GIENGAFQGMKKLSY 175 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------------------GBCTTGGGGCTTCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCcc----------------------------------CcChhhccCCCCcCE
Confidence 7777766666777777777777777766421 012233444555555
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccce
Q 045323 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598 (740)
Q Consensus 519 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 598 (740)
|++++|.++. +|..+. ++|+.|++++|.+.+..|..+.
T Consensus 176 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~--------------------------------------- 213 (330)
T 1xku_A 176 IRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLK--------------------------------------- 213 (330)
T ss_dssp EECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGT---------------------------------------
T ss_pred EECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhc---------------------------------------
Confidence 5555555542 222221 4555555555555433332222
Q ss_pred eeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.+++|+.|++++|++.+..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus 214 ----------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 214 ----------------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ----------------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ----------------CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 1225555666666665555555666666666666666666 55555666666666666666666
Q ss_pred ccCCccccc------CCcCceeeccCccccc--CCCCcccCCCCccccccccC
Q 045323 679 GKIPPRLIE------LNALAVFSVAFNNLSG--KTPDRVAQFGTFEEDSYEGN 723 (740)
Q Consensus 679 ~~~~~~l~~------l~~L~~L~ls~N~l~~--~~~~~~~~~~~l~~l~l~~N 723 (740)
+..+..|.. .+.|+.+++++|++.. ..|..|..+.+++.+++++|
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 544444432 2456666666666642 44555666666666766666
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-33 Score=300.88 Aligned_cols=207 Identities=17% Similarity=0.166 Sum_probs=115.3
Q ss_pred CCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccc----cCCCCCCCCCCCCEEEccCCcccccCchhhhhcCC--
Q 045323 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFG----PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLP-- 329 (740)
Q Consensus 256 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~-- 329 (740)
+|++|+++++++.+.....++..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 455666666665543333334556666666666666543 22344555667777777777766544545544444
Q ss_pred --CCcEEeccCCccccc----CCCCccCcCccccCCccEEEccCCCCCCcCccccc-----CCCCCCeeecCCCcceecC
Q 045323 330 --NLVVLNVATNAFNGS----IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-----NLTKLKRLNLDGNHFIGDI 398 (740)
Q Consensus 330 --~L~~L~l~~n~~~~~----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~ 398 (740)
+|++|++++|.+.+. ++..+... ++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-----~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTL-----PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSC-----TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccC-----CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 577777777666532 23333332 2566666666666543222221 2345677777776665422
Q ss_pred ----CcCCCCCCCCceEeCCCcccccCCCcCCC-----CCCCCCEEeCCCCcCcCC----chhhhcCCCCCCEEECCCCc
Q 045323 399 ----PKTLSNCSALQGLYISDNNISGNIPTRLG-----NLSFLDAIMMPNNRLEGP----IPSAFCQLRHLEILDLSRNN 465 (740)
Q Consensus 399 ----~~~l~~~~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~ 465 (740)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 33344456677777776666533222221 244667777777766643 34555666777777777766
Q ss_pred Cc
Q 045323 466 IS 467 (740)
Q Consensus 466 ~~ 467 (740)
+.
T Consensus 239 l~ 240 (461)
T 1z7x_W 239 LG 240 (461)
T ss_dssp CH
T ss_pred CC
Confidence 55
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-29 Score=257.12 Aligned_cols=289 Identities=19% Similarity=0.200 Sum_probs=219.1
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.++.++++++.+.. +|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 58889999888874 44444 2688999999998887777788888999999999998887778888889999999999
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCC-CCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCc
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS-CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLR 517 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~ 517 (740)
+|.++. +|..+. ++|++|++++|.+.+..+. +..+++|+.|++++|.++.. +..+..+..+ +|+
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------GFEPGAFDGL-KLN 175 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------GSCTTSSCSC-CCS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-----------CCCcccccCC-ccC
Confidence 988884 343333 7889999998888855554 34588888888888877521 1334555556 888
Q ss_pred EEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccc
Q 045323 518 YLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHK 597 (740)
Q Consensus 518 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 597 (740)
.|++++|.+++ +|..+. ++|+.|++++|.+.+..|..+.
T Consensus 176 ~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-------------------------------------- 214 (332)
T 2ft3_A 176 YLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLL-------------------------------------- 214 (332)
T ss_dssp CCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSST--------------------------------------
T ss_pred EEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhc--------------------------------------
Confidence 88888888874 444332 6888888888887755444333
Q ss_pred eeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045323 598 YLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677 (740)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l 677 (740)
.+++|+.|++++|++.+..+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++
T Consensus 215 -----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 215 -----------------RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp -----------------TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred -----------------CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 2347888889999888777778888899999999999888 6777788888999999999998
Q ss_pred CccCCcccccC------CcCceeeccCcccc--cCCCCcccCCCCccccccccCC
Q 045323 678 NGKIPPRLIEL------NALAVFSVAFNNLS--GKTPDRVAQFGTFEEDSYEGNP 724 (740)
Q Consensus 678 ~~~~~~~l~~l------~~L~~L~ls~N~l~--~~~~~~~~~~~~l~~l~l~~Np 724 (740)
++..+..+... ..|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 87666666543 56888999999887 6777778888888888888874
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=253.70 Aligned_cols=269 Identities=22% Similarity=0.287 Sum_probs=203.4
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
+++.++++++.+. .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3445555554443 2232222 455666666666665544556666666666666666665556666666677777777
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccc--cCCccccCCCCC
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEG--EMPLQLCWLNKL 540 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~l~~L 540 (740)
+|.+....... .++|++|++++|.+++ ..+..+..+++|++|++++|.+.. ..+..+..+++|
T Consensus 109 ~n~l~~l~~~~--~~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 109 KNQLKELPEKM--PKTLQELRVHENEITK-------------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp SSCCSBCCSSC--CTTCCEEECCSSCCCB-------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCcCCccChhh--cccccEEECCCCcccc-------------cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 77666322222 2577777777776652 334568889999999999999963 567788999999
Q ss_pred CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCcc
Q 045323 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620 (740)
Q Consensus 541 ~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 620 (740)
+.|++++|.+.. +|..+ .++|+
T Consensus 174 ~~L~l~~n~l~~-l~~~~---------------------------------------------------------~~~L~ 195 (330)
T 1xku_A 174 SYIRIADTNITT-IPQGL---------------------------------------------------------PPSLT 195 (330)
T ss_dssp CEEECCSSCCCS-CCSSC---------------------------------------------------------CTTCS
T ss_pred CEEECCCCcccc-CCccc---------------------------------------------------------cccCC
Confidence 999999999863 33211 14899
Q ss_pred EEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcc
Q 045323 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 621 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 700 (740)
.|++++|++.+..|..|..+++|++|+|++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|+
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 9999999999888999999999999999999999888889999999999999999999 788899999999999999999
Q ss_pred cccCCCCcccCC------CCccccccccCCCCCC
Q 045323 701 LSGKTPDRVAQF------GTFEEDSYEGNPFLCG 728 (740)
Q Consensus 701 l~~~~~~~~~~~------~~l~~l~l~~Np~~c~ 728 (740)
+++..+..|... .+++.+++++||+.+.
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCccChhhcCCcccccccccccceEeecCccccc
Confidence 999988877543 7788999999999763
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-32 Score=295.97 Aligned_cols=94 Identities=21% Similarity=0.156 Sum_probs=48.1
Q ss_pred hhcCCCCCCEEEcCCCCCCCCCChhHHhcCC----CCCEEEccCCcccc----cCCCCCCCCCCCCEEEccCCcccccCc
Q 045323 250 FLYHQHDLEYVDLSHLNLTREFPNWLLEKNK----KLKRLSLVNISLFG----PFPLPIHCHKNLRVLDVSNNKLQGHIP 321 (740)
Q Consensus 250 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~ 321 (740)
.+..+++|++|++++|.+.+..+..++..++ +|++|++++|.+.. ..+..+..+++|++|++++|.+++..+
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 3444455555555555544333333333333 45555555555442 224455666777777777777664434
Q ss_pred hhhhhc----CCCCcEEeccCCcccc
Q 045323 322 IEIGEV----LPNLVVLNVATNAFNG 343 (740)
Q Consensus 322 ~~~~~~----l~~L~~L~l~~n~~~~ 343 (740)
..+... .++|++|++++|.+++
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCH
Confidence 433322 2346666666665543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-29 Score=258.64 Aligned_cols=281 Identities=19% Similarity=0.210 Sum_probs=197.2
Q ss_pred cCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEe
Q 045323 357 CFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIM 436 (740)
Q Consensus 357 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 436 (740)
|+.....+.+++.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 4445557777777774 333333 5788888888888776666788888888888888888877777788888888888
Q ss_pred CCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCC
Q 045323 437 MPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQL 516 (740)
Q Consensus 437 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L 516 (740)
+++|.++...+..|.++++|++|++++|++.+... ...+..+++|
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----------------------------------~~~~~~l~~L 151 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-----------------------------------TSLFSHLTKL 151 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS-----------------------------------SCSCTTCTTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc-----------------------------------hhhhccCCCC
Confidence 88888887666668888888888888887763221 0134556666
Q ss_pred cEEecccC-cccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccc
Q 045323 517 RYLILANN-GLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHN 595 (740)
Q Consensus 517 ~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 595 (740)
++|++++| .+....+..+..+++|+.|++++|.+.+..|..+..
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~----------------------------------- 196 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS----------------------------------- 196 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-----------------------------------
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-----------------------------------
Confidence 66777666 355444556666777777777777666444443332
Q ss_pred cceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCcccc---CCCCCCEEeC
Q 045323 596 HKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFS---HMKQVESLDL 672 (740)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~---~l~~L~~L~L 672 (740)
+++|+.|++++|++....+..+..+++|++|+|++|++++..+..+. ..+.++.++|
T Consensus 197 --------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 197 --------------------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp --------------------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred --------------------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 23667777777776533333345577788888888877765544332 3566788888
Q ss_pred CCCccCc----cCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 673 SYNNLNG----KIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 673 s~n~l~~----~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+++.+++ .+|+.+..+++|+.|++++|+++..++..++.+++|+++++++||+.|+|+
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 8888774 467778888889999999999887666656888889999999999999886
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=251.27 Aligned_cols=251 Identities=20% Similarity=0.240 Sum_probs=145.3
Q ss_pred CeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCC--chhhhcCCCCCCEEECC
Q 045323 385 KRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGP--IPSAFCQLRHLEILDLS 462 (740)
Q Consensus 385 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~ 462 (740)
+.++.+++.++ .+|..+. ++|++|++++|.+....+..|..+++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45667666665 3343332 5777788887777754444567777777777777777632 24555667777777777
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCC
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQ 541 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~ 541 (740)
+|.+... +..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 87 ~n~i~~l-------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 87 FNGVITM-------------------------------------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp SCSEEEE-------------------------------------EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred CCccccC-------------------------------------hhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence 7766533 2334445555555555555543322 3445555555
Q ss_pred EEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccE
Q 045323 542 LVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSG 621 (740)
Q Consensus 542 ~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 621 (740)
.|++++|.+.+..|..+. .+++|+.
T Consensus 130 ~L~l~~n~l~~~~~~~~~-------------------------------------------------------~l~~L~~ 154 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFN-------------------------------------------------------GLSSLEV 154 (306)
T ss_dssp EEECTTSCCEECSTTTTT-------------------------------------------------------TCTTCCE
T ss_pred EEECCCCcCCccchhhcc-------------------------------------------------------cCcCCCE
Confidence 555555554433332221 1225555
Q ss_pred EEcccCcccc-cChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcc
Q 045323 622 LDLSCNKLIG-EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 622 L~ls~n~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 700 (740)
|++++|.+.+ ..|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 5555555543 345555556666666666666665555666666666666666666665555555556666666666666
Q ss_pred cccCCCCcccCC-CCccccccccCCCCCCcC
Q 045323 701 LSGKTPDRVAQF-GTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 701 l~~~~~~~~~~~-~~l~~l~l~~Np~~c~~~ 730 (740)
+++..|..+..+ ++|+++++++||+.|+|+
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 666666555555 356666666666666665
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=259.26 Aligned_cols=234 Identities=22% Similarity=0.269 Sum_probs=165.9
Q ss_pred CCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcC
Q 045323 406 SALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLS 485 (740)
Q Consensus 406 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 485 (740)
++++.|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++++|.++...
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 128 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--------------- 128 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC---------------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC---------------
Confidence 34555555555555554555555566666666666555555555666666666666666554221
Q ss_pred CCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccc
Q 045323 486 KNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNY 565 (740)
Q Consensus 486 ~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~ 565 (740)
+..|..+++|++|++++|.+....+..+..+++|+.|++++|+..+.++..
T Consensus 129 ---------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-------- 179 (440)
T 3zyj_A 129 ---------------------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-------- 179 (440)
T ss_dssp ---------------------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT--------
T ss_pred ---------------------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc--------
Confidence 223455666666666666666555556666677777777664432222210
Q ss_pred ccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcE
Q 045323 566 REDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHT 645 (740)
Q Consensus 566 ~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 645 (740)
.+..+++|+.|++++|++. .+| .+..+++|++
T Consensus 180 ----------------------------------------------~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 180 ----------------------------------------------AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDE 211 (440)
T ss_dssp ----------------------------------------------TTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCE
T ss_pred ----------------------------------------------hhhcccccCeecCCCCcCc-ccc-ccCCCcccCE
Confidence 1223446777777777776 445 3778899999
Q ss_pred EECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCC
Q 045323 646 LNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 646 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..++.+..+++|+.|++++|||
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999988899999999999999999999988888999999999999999999999998889999999999999999
Q ss_pred CCCcCC
Q 045323 726 LCGQPL 731 (740)
Q Consensus 726 ~c~~~l 731 (740)
.|+|.+
T Consensus 292 ~CdC~l 297 (440)
T 3zyj_A 292 NCNCDI 297 (440)
T ss_dssp ECSSTT
T ss_pred cCCCCc
Confidence 999975
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=258.93 Aligned_cols=115 Identities=21% Similarity=0.293 Sum_probs=97.2
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
+++|+.|++++|++.+ +| .+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+
T Consensus 195 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 3467777777777763 34 367788888999999998888888888899999999999999888888888899999999
Q ss_pred ccCcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 696 ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
+++|++++.+++.+..+++|+.|++++|||.|+|.+.
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 9999999888888888999999999999999999854
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=234.78 Aligned_cols=114 Identities=20% Similarity=0.255 Sum_probs=57.0
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|+++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 34444444444443333334445555555555555554444445555555555555555554445555555555555555
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
+|++++.++..+..+++|+++++++||+.|+|++
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 5555554444445555555555555555555543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=239.45 Aligned_cols=175 Identities=21% Similarity=0.191 Sum_probs=119.0
Q ss_pred ccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccC--CCcCCCCCCCCCEEeC
Q 045323 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN--IPTRLGNLSFLDAIMM 437 (740)
Q Consensus 360 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l 437 (740)
-+.++.+++.++. +|..+. +++++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4678888888874 344333 6899999999999866666789999999999999998733 2456667899999999
Q ss_pred CCCcCcCCchhhhcCCCCCCEEECCCCcCcccCC--CCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCC
Q 045323 438 PNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP--SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQ 515 (740)
Q Consensus 438 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 515 (740)
++|.+. .++..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+++ ..+..+..+++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~ 151 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------------AFNGIFNGLSS 151 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-------------CSTTTTTTCTT
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-------------cchhhcccCcC
Confidence 999998 466678899999999999998875433 23335555555555554431 22333444555
Q ss_pred CcEEecccCcccc-cCCccccCCCCCCEEEccCCcCc
Q 045323 516 LRYLILANNGLEG-EMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 516 L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
|++|++++|.+.+ ..|..+..+++|+.|++++|.+.
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 5555555555543 23444444555555555555444
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=236.65 Aligned_cols=256 Identities=18% Similarity=0.196 Sum_probs=126.9
Q ss_pred ccCCCcHHHHHHHHHHhhc-----------CC-----CCCCccccceEecC--------CCCceEEEECCCCCCCCCCCc
Q 045323 4 WSEGCLEQEGYALLKLKHD-----------FF-----NNHCCQWACVECNT--------TTGKVISLDLDGTRKLGDGEG 59 (740)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-----------~~-----~~~~c~~~~~~c~~--------~~~~v~~ldl~~~~~~~~~~~ 59 (740)
|..++...++.|++++|.. |. ..++|.|.|+.|.. ...+|+.+|++++.+
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l------ 93 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL------ 93 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCC------
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCc------
Confidence 4466788899999999985 62 56778888888842 112333333333322
Q ss_pred cccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEE
Q 045323 60 YLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVN 139 (740)
Q Consensus 60 ~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 139 (740)
. .+|..+..+++|++|++++|.+. .+|. .+.++++|++|+
T Consensus 94 -----------------------~---------------~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~~~l~~L~~L~ 133 (328)
T 4fcg_A 94 -----------------------P---------------QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TMQQFAGLETLT 133 (328)
T ss_dssp -----------------------S---------------SCCSCGGGGTTCSEEEEESSCCC-CCCS-CGGGGTTCSEEE
T ss_pred -----------------------h---------------hcChhhhhCCCCCEEECCCCCcc-chhH-HHhccCCCCEEE
Confidence 1 12233334555555555555554 4443 455555555555
Q ss_pred ccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccc
Q 045323 140 IDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAE 219 (740)
Q Consensus 140 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 219 (740)
+++|.++ .+|..+.++++|++|++++|.+.+.+|. .+.. ..+.
T Consensus 134 Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~------~~~~----------------------------- 176 (328)
T 4fcg_A 134 LARNPLR-ALPASIASLNRLRELSIRACPELTELPE-PLAS------TDAS----------------------------- 176 (328)
T ss_dssp EESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSEE------EC-C-----------------------------
T ss_pred CCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-hHhh------ccch-----------------------------
Confidence 5555555 3444555555555555555544444443 2211 0000
Q ss_pred cccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCC
Q 045323 220 IETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLP 299 (740)
Q Consensus 220 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 299 (740)
..+..+.+|+.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+..|..
T Consensus 177 -----~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l-~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 177 -----GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI-HHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp -----CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG-GGCTTCCEEECTTCTTCCBCCCC
T ss_pred -----hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh-ccCCCCCEEECcCCcchhhhHHH
Confidence 00011123333333333333 24445555556666666666555 244332 45555555555555555555555
Q ss_pred CCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccC
Q 045323 300 IHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGN 351 (740)
Q Consensus 300 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 351 (740)
+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.+.+|..+..
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCCGGGGG
T ss_pred hcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchhhccHHHhh
Confidence 555555555555555554445544433 444444444444444444444443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=227.73 Aligned_cols=268 Identities=22% Similarity=0.256 Sum_probs=174.8
Q ss_pred cEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCC
Q 045323 361 EYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440 (740)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 440 (740)
++++.+++.++.. |..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4555555555532 2222 245666666666666555555666666666666666666555566666666666666666
Q ss_pred c-CcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEE
Q 045323 441 R-LEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYL 519 (740)
Q Consensus 441 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 519 (740)
. +....+..|..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------------------~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL------------------------------------GPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC------------------------------------CTTTTTTCTTCCEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE------------------------------------CHhHhhCCcCCCEE
Confidence 5 5544455666666666666666655422 23445566777777
Q ss_pred ecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhccccccee
Q 045323 520 ILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYL 599 (740)
Q Consensus 520 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 599 (740)
++++|.+.+..+..+..+++|+.|++++|.+.+..+..+
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------------- 173 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF----------------------------------------- 173 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT-----------------------------------------
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh-----------------------------------------
Confidence 777777765555556777777777777777653322222
Q ss_pred eeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc
Q 045323 600 TNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
..+++|+.|++++|++.+..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 174 --------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 174 --------------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp --------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred --------------cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 223477778888888877778888888889999999998887777778888899999999998874
Q ss_pred cCCcccccCCcCceeeccCcccccCCCCcccC--CCCccccccccC
Q 045323 680 KIPPRLIELNALAVFSVAFNNLSGKTPDRVAQ--FGTFEEDSYEGN 723 (740)
Q Consensus 680 ~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~--~~~l~~l~l~~N 723 (740)
..+. ..-...++.+..+.+.+....|..+.+ +..++..+++||
T Consensus 240 ~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 240 DCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp SGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 3322 122245677778888888888876644 355666666664
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=239.14 Aligned_cols=277 Identities=18% Similarity=0.158 Sum_probs=188.7
Q ss_pred cEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceE
Q 045323 332 VVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGL 411 (740)
Q Consensus 332 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 411 (740)
...+.+++.++ .+|..+.. +|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 34 ~~c~~~~~~l~-~iP~~~~~-------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLTE-------AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp SEEECCSTTCS-SCCTTCCT-------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred eEeeCCCCCcc-cccccccc-------cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34455555554 33433321 57777777777776555567777778888888887777767777777888888
Q ss_pred eCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCch-hhhcCCCCCCEEECCCCc-CcccCCC-CCCCCcccEEEcCCCc
Q 045323 412 YISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNN-ISGSLPS-CSSPFNIRRVHLSKNM 488 (740)
Q Consensus 412 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~-~~~~~~L~~L~l~~n~ 488 (740)
++++|.+++..+..+..+++|++|++++|.++.... ..+.++++|++|++++|. +....+. +..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888888775444457778888888888887775444 467778888888888874 5544333 3447777888777776
Q ss_pred ccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccC
Q 045323 489 LQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRED 568 (740)
Q Consensus 489 i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~ 568 (740)
+++ ..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+..
T Consensus 186 l~~-------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------- 244 (353)
T 2z80_A 186 LQS-------------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------- 244 (353)
T ss_dssp CCE-------------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------
T ss_pred cCc-------------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc--------
Confidence 652 34566778888999999988887444444556788999999999887543332211
Q ss_pred CCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccc----cChhhhhcCCCCc
Q 045323 569 NHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG----EIPLQIGELSRIH 644 (740)
Q Consensus 569 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~l~~l~~L~ 644 (740)
....+.++.++++++.+.+ .+|..+..+++|+
T Consensus 245 --------------------------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 245 --------------------------------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp ----------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred --------------------------------------------ccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 0122356666777666654 3677788888888
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEeCCCCccCccC
Q 045323 645 TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681 (740)
Q Consensus 645 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 681 (740)
+|+|++|+++...+..|+.+++|++|++++|++.+..
T Consensus 281 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 8888888888554455688888888888888887543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-28 Score=275.33 Aligned_cols=249 Identities=16% Similarity=0.119 Sum_probs=128.9
Q ss_pred CCCCccccceEecCCCCceEEEECCCCCCCCCCCccccccccccccccceeeCCCC------------------------
Q 045323 25 NNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSIL------------------------ 80 (740)
Q Consensus 25 ~~~~c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~------------------------ 80 (740)
+.-|.+|.++.+.. -..+.+.+. . .......+.++++|++|+++++
T Consensus 38 s~vck~W~~~~~~~----~~~l~~~~~-~-----~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l 107 (592)
T 3ogk_B 38 SLVCRRWFKIDSET----REHVTMALC-Y-----TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI 107 (592)
T ss_dssp TTSCHHHHHHHHHH----CCEEEESCG-G-----GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH
T ss_pred HHHhHHHHHhhhcc----ccEEEEeec-c-----ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHH
Confidence 35567898875322 112233221 1 1233456778889999999652
Q ss_pred --CCCCCcEEeCCCCCCcCcccchhccc-CC-CCCEEECCCCCC-CCccChhhhcCCCCCCEEEccCCccccc----ccc
Q 045323 81 --NFKNLEYFNMDFCTAFSNSFLQMSEL-MA-SLKYLSLSNSYL-NGTILDQGLCELVYLQEVNIDRNNLSGS----LPW 151 (740)
Q Consensus 81 --~l~~L~~L~l~~~~~~~~~~~~~l~~-l~-~L~~L~Ls~n~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 151 (740)
.+++|+.|+++ .+.+.+..+..+.. ++ +|++|++++|.. ........+.++++|++|+|++|.+++. ++.
T Consensus 108 ~~~~~~L~~L~L~-~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 108 SNNLRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HHHCTTCCEEEEE-SCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred HhhCCCCCeEEee-ccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 45667777776 44555554444443 23 377777776651 1000011234667777777777766544 223
Q ss_pred cCcCCCCCCEEEcCCCCCCC----CCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCcccc---cccc
Q 045323 152 CLANLTYLRLLDVSFNQLTE----NISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEI---ETSH 224 (740)
Q Consensus 152 ~l~~l~~L~~L~l~~n~l~~----~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~ 224 (740)
.+..+++|++|++++|.+++ .++. .+..+++|++|++++|.+.+ ++ ..+.++++|+.+++...... ....
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHH
Confidence 34566777777777776652 1121 33456777777777766653 22 34556666666666532111 1112
Q ss_pred CCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEcc
Q 045323 225 SSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLV 288 (740)
Q Consensus 225 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~ 288 (740)
..+..+.+|+.+.+.+.. ...++..+..+++|++|++++|.+.+.....++..+++|++|++.
T Consensus 264 ~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 233334455555555432 222444445555555555555554433222223445555555555
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-28 Score=273.56 Aligned_cols=403 Identities=12% Similarity=0.057 Sum_probs=262.3
Q ss_pred CCCCCCEEEcCCCCCCCCCChhHHhcCCC-CCEEEccCCcccc--cCCCCCCCCCCCCEEEccCCcccccCch---hhhh
Q 045323 253 HQHDLEYVDLSHLNLTREFPNWLLEKNKK-LKRLSLVNISLFG--PFPLPIHCHKNLRVLDVSNNKLQGHIPI---EIGE 326 (740)
Q Consensus 253 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~---~~~~ 326 (740)
.+++|++|++++|.+.+..+.++...+++ |++|++++|.... ..+.....+++|++|++++|.+++.... .+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 67889999999988776666555433455 9999998886321 1122234678899999999987754322 2333
Q ss_pred cCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcce---ecCCcCCC
Q 045323 327 VLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFI---GDIPKTLS 403 (740)
Q Consensus 327 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~l~ 403 (740)
.+++|++|++++|.+.+.....+.... ..+++|++|++++|.+.+ .+..+..+++|++|+++.+... ......+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 478999999998887632222221111 134589999999988775 4566778899999999754322 12334567
Q ss_pred CCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCch-hhhcCCCCCCEEECCCCcCcccCCCC-CCCCcccE
Q 045323 404 NCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNNISGSLPSC-SSPFNIRR 481 (740)
Q Consensus 404 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~ 481 (740)
.+++|+.++++++... .++..+..+++|++|++++|.+++... ..+.++++|++|+++++...+.++.. ..+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 7788999988876433 556677788899999999988764433 34678999999999843222222222 23778999
Q ss_pred EEcCC-----------CcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccC-CCCCCEEEccC--
Q 045323 482 VHLSK-----------NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW-LNKLQLVDLSH-- 547 (740)
Q Consensus 482 L~l~~-----------n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~l~~-- 547 (740)
|++++ +.+++. .++.....+++|++|+++.+.+++..+..+.. +++|+.|++++
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~------------~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQR------------GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHH------------HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred EEeecCccccccccccCccCHH------------HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 99983 333211 11223445889999999888888666655554 88999999973
Q ss_pred --CcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcc
Q 045323 548 --NNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLS 625 (740)
Q Consensus 548 --n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls 625 (740)
|.+++...+. .+.. .+..+++|+.|+++
T Consensus 415 ~~n~l~~~p~~~---------------------------~~~~-----------------------~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 415 REERITDLPLDN---------------------------GVRS-----------------------LLIGCKKLRRFAFY 444 (592)
T ss_dssp CCSCCSSCCCHH---------------------------HHHH-----------------------HHHHCTTCCEEEEE
T ss_pred CCccccCchHHH---------------------------HHHH-----------------------HHHhCCCCCEEEEe
Confidence 3443210000 0000 02235688888887
Q ss_pred cCc--ccccChhhhhc-CCCCcEEECcCCcCccc-CCccccCCCCCCEEeCCCCccCcc-CCcccccCCcCceeeccCcc
Q 045323 626 CNK--LIGEIPLQIGE-LSRIHTLNLSHNNLTGE-SPVTFSHMKQVESLDLSYNNLNGK-IPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 626 ~n~--l~~~~~~~l~~-l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~ 700 (740)
+|. +++..+..+.. +++|++|+|++|++++. .+..+..+++|++|++++|++++. ++.....+++|+.|++++|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 544 55555555544 78899999999988763 344557788899999999988744 34455678889999999998
Q ss_pred cccCCCCcc-cCCCCcccccc
Q 045323 701 LSGKTPDRV-AQFGTFEEDSY 720 (740)
Q Consensus 701 l~~~~~~~~-~~~~~l~~l~l 720 (740)
++......+ ..++.+....+
T Consensus 525 it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 525 ASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp CCTTCTTGGGGCCTTEEEEEE
T ss_pred CCHHHHHHHHHhCCCcEEEEe
Confidence 765533222 34455544333
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=230.93 Aligned_cols=237 Identities=19% Similarity=0.249 Sum_probs=178.0
Q ss_pred CCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEE
Q 045323 381 LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460 (740)
Q Consensus 381 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 460 (740)
.+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 477888888888887 56666777888888888888888 77888888888888888888888 6677788888888888
Q ss_pred CCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCC
Q 045323 461 LSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540 (740)
Q Consensus 461 l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 540 (740)
+++|.+.+.+|.... .. ..+..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 157 L~~n~~~~~~p~~~~-----~~----------------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L 208 (328)
T 4fcg_A 157 IRACPELTELPEPLA-----ST----------------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208 (328)
T ss_dssp EEEETTCCCCCSCSE-----EE----------------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC
T ss_pred CCCCCCccccChhHh-----hc----------------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC
Confidence 888776655543211 11 11233556788888888888887 667778888888
Q ss_pred CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCcc
Q 045323 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620 (740)
Q Consensus 541 ~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 620 (740)
+.|++++|.+.+ +|..+. .+++|+
T Consensus 209 ~~L~L~~N~l~~-l~~~l~-------------------------------------------------------~l~~L~ 232 (328)
T 4fcg_A 209 KSLKIRNSPLSA-LGPAIH-------------------------------------------------------HLPKLE 232 (328)
T ss_dssp CEEEEESSCCCC-CCGGGG-------------------------------------------------------GCTTCC
T ss_pred CEEEccCCCCCc-Cchhhc-------------------------------------------------------cCCCCC
Confidence 888888888763 332222 234778
Q ss_pred EEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcc
Q 045323 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 621 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 700 (740)
.|++++|++.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|+.+..+++|+.++++.|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 88888888777778778888888888888887777778778888888888888888877888888888888888877766
Q ss_pred cccC
Q 045323 701 LSGK 704 (740)
Q Consensus 701 l~~~ 704 (740)
+...
T Consensus 313 ~~~l 316 (328)
T 4fcg_A 313 QAQL 316 (328)
T ss_dssp SCC-
T ss_pred HHHH
Confidence 5433
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=234.52 Aligned_cols=228 Identities=22% Similarity=0.193 Sum_probs=115.0
Q ss_pred CCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEEC
Q 045323 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDL 461 (740)
Q Consensus 382 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 461 (740)
++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34455555555555444444555555555555555555444445555555555555555555444444555555555555
Q ss_pred CCCcCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCC
Q 045323 462 SRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540 (740)
Q Consensus 462 ~~n~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 540 (740)
++|.+....+.. ..+++|+.|++++|... ....+..|..+++|++|++++|.+++. | .+..+++|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l------------~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L 220 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKL------------EYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGL 220 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTC------------CEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCc------------cccChhhccCCCCCCEEECCCCccccc-c-cccccccc
Confidence 555544322211 11333333333332110 001122355566666666666666532 2 35555666
Q ss_pred CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCcc
Q 045323 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620 (740)
Q Consensus 541 ~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 620 (740)
+.|++++|.+.+..|..|.+ +++|+
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------l~~L~ 245 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHG-------------------------------------------------------LSSLK 245 (452)
T ss_dssp CEEECTTSCCSEECGGGGTT-------------------------------------------------------CTTCC
T ss_pred cEEECcCCcCcccCcccccC-------------------------------------------------------ccCCC
Confidence 66666666655433332222 22555
Q ss_pred EEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 621 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 246 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6666666665555555555666666666666666555555555566666666666554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=233.84 Aligned_cols=228 Identities=27% Similarity=0.257 Sum_probs=127.2
Q ss_pred CCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEEC
Q 045323 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDL 461 (740)
Q Consensus 382 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 461 (740)
++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 44555555555555555555555555555555555555444455555566666666666555554455556666666666
Q ss_pred CCCcCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCC
Q 045323 462 SRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540 (740)
Q Consensus 462 ~~n~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 540 (740)
++|.+....+.. ..+++|+.|++++|... ....+..|..+++|++|++++|.++ .+| .+..+++|
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l------------~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L 209 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRL------------SYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL 209 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTC------------CEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCc------------ceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc
Confidence 666555333221 12344444444432211 0111234556677777777777766 233 35566666
Q ss_pred CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCcc
Q 045323 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620 (740)
Q Consensus 541 ~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 620 (740)
+.|++++|++.+..|..|.+ +++|+
T Consensus 210 ~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------l~~L~ 234 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGSFQG-------------------------------------------------------LMHLQ 234 (440)
T ss_dssp CEEECTTSCCCEECTTTTTT-------------------------------------------------------CTTCC
T ss_pred CEEECCCCccCccChhhhcc-------------------------------------------------------CccCC
Confidence 66666666665444433322 23666
Q ss_pred EEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 621 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6666666666666666666666666666666666666666666666666666666654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-26 Score=247.71 Aligned_cols=248 Identities=22% Similarity=0.211 Sum_probs=164.5
Q ss_pred CCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEc
Q 045323 405 CSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHL 484 (740)
Q Consensus 405 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 484 (740)
+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ .++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3455555555555555444555555666666666665554333 5556666666666666553322 256666666
Q ss_pred CCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccc
Q 045323 485 SKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFN 564 (740)
Q Consensus 485 ~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~ 564 (740)
++|.+++. + ...+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+.
T Consensus 107 ~~N~l~~~--------------~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----- 165 (487)
T 3oja_A 107 ANNNISRV--------------S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----- 165 (487)
T ss_dssp CSSCCCCE--------------E--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-----
T ss_pred cCCcCCCC--------------C--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-----
Confidence 66665422 1 12356778888888887776666777778888888888877655444332
Q ss_pred cccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCc
Q 045323 565 YREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIH 644 (740)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 644 (740)
..+++|+.|++++|.+++..+ +..+++|+
T Consensus 166 -------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~ 194 (487)
T 3oja_A 166 -------------------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLK 194 (487)
T ss_dssp -------------------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCC
T ss_pred -------------------------------------------------hhCCcccEEecCCCccccccc--cccCCCCC
Confidence 123477788888888775522 33578888
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccc-cCCCCcccCCCCccccccc--
Q 045323 645 TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS-GKTPDRVAQFGTFEEDSYE-- 721 (740)
Q Consensus 645 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~-~~~~~~~~~~~~l~~l~l~-- 721 (740)
+|+|++|.+++.+|. +..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.++.+++.
T Consensus 195 ~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp EEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 888888888865444 7778888888888888884 6667777888888888888876 5566667777788888876
Q ss_pred -----cCCCCCCcCCC
Q 045323 722 -----GNPFLCGQPLL 732 (740)
Q Consensus 722 -----~Np~~c~~~l~ 732 (740)
+||+.|+|+..
T Consensus 273 ~~~~~~~~~~c~~~~~ 288 (487)
T 3oja_A 273 KKLTGQNEEECTVPTL 288 (487)
T ss_dssp HHHTSSSSCCCSSTTC
T ss_pred ccccCCCcccccCCcc
Confidence 88999988643
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-26 Score=237.29 Aligned_cols=269 Identities=20% Similarity=0.180 Sum_probs=190.5
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 46666677666654444445566788888888888887666777888888888888888875443 7788888888888
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcE
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 518 (740)
+|.+++.. ..++|++|++++|.+.+..+.. +++|+.|++++|++++ ..+..+..+++|++
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITM-------------LRDLDEGCRSRVQY 148 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCS-------------GGGBCTGGGSSEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCC-------------ccchhhhccCCCCE
Confidence 88876432 3478888888888877554332 5678888887777653 23345666778888
Q ss_pred EecccCcccccCCccc-cCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccc
Q 045323 519 LILANNGLEGEMPLQL-CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHK 597 (740)
Q Consensus 519 L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 597 (740)
|++++|.+.+..+..+ ..+++|+.|++++|.+.+. |.
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~----------------------------------------- 186 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG----------------------------------------- 186 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-----------------------------------------
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-----------------------------------------
Confidence 8888888876655554 3577888888888876522 10
Q ss_pred eeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045323 598 YLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677 (740)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l 677 (740)
...+++|+.|++++|++.+. |..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++
T Consensus 187 ---------------~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 187 ---------------QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp ---------------CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred ---------------ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 11245788888888888744 344777888888888888888 4566677788888888888888
Q ss_pred C-ccCCcccccCCcCceeeccCc-ccccCCCCc
Q 045323 678 N-GKIPPRLIELNALAVFSVAFN-NLSGKTPDR 708 (740)
Q Consensus 678 ~-~~~~~~l~~l~~L~~L~ls~N-~l~~~~~~~ 708 (740)
. +.+|..+..+++|+.+++++| .+.+..|..
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 7 667777777888888888855 466665543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=218.74 Aligned_cols=166 Identities=22% Similarity=0.255 Sum_probs=116.5
Q ss_pred ccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHH
Q 045323 509 WMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588 (740)
Q Consensus 509 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 588 (740)
.+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------------ 120 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI------------------------------ 120 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC------------------------------
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc------------------------------
Confidence 34455666666666666665555556666666666666666653322211
Q ss_pred hhhcccccceeeeeeeccccceeecccCCCccEEEcccCccccc-ChhhhhcCCCCcEEECcCCcCcccCCccccCCCCC
Q 045323 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE-IPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQV 667 (740)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 667 (740)
..+++|+.|++++|++.+. +|..+..+++|++|+|++|++++..+..+..+++|
T Consensus 121 -------------------------~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 121 -------------------------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp -------------------------TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred -------------------------ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 2234677777777777643 47778888888888888888887777777766666
Q ss_pred C----EEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 668 E----SLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 668 ~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+ +|++++|++++..+..+. ..+|+.|++++|++++.++..++.+++|+++++++||+.|+|+
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 6 788888888855554443 3478888888888888877777888888888899999988886
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=213.46 Aligned_cols=206 Identities=21% Similarity=0.260 Sum_probs=166.8
Q ss_pred CCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccc
Q 045323 455 HLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQL 534 (740)
Q Consensus 455 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 534 (740)
..+.++++++.++. +|.. .++++++|++++|.+++ ..+..|..+++|++|++++|.++...+..+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~-~~~~l~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~ 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSN-IPADTKKLDLQSNKLSS-------------LPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81 (270)
T ss_dssp TTTEEECTTSCCSS-CCSC-CCTTCSEEECCSSCCSC-------------CCTTSSSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCEEEccCCCCCc-cCCC-CCCCCCEEECcCCCCCe-------------eCHHHhcCCCCCCEEECCCCccCeeChhhh
Confidence 35566666666653 2221 13466677776666542 233467788999999999999986666667
Q ss_pred cCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecc
Q 045323 535 CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQ 614 (740)
Q Consensus 535 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (740)
..+++|+.|++++|.+.+..+..+.
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------------------- 106 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFD------------------------------------------------------- 106 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTT-------------------------------------------------------
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcc-------------------------------------------------------
Confidence 8899999999999988744433322
Q ss_pred cCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 615 PLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|+.+++|++|++++|++++..+..+..+++|+.|
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 34489999999999998888889999999999999999998888889999999999999999998777789999999999
Q ss_pred eccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
++++|++++..+..+..+++|+.+++++|||.|+|+
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999999999888888999999999999999999997
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=229.31 Aligned_cols=260 Identities=20% Similarity=0.189 Sum_probs=206.0
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
.++..+++.+.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34556677776655444455667789999999999997777788999999999999999886554 8889999999999
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
+|.+.+..+ .++|+.|++++|.+++. + ...+++|++|++++|.+++..+..+..+++|+.
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~--------------~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAANNNISRV--------------S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCSEE--------------E--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred CCccccccC----CCCcCEEECCCCccCCc--------------C--ccccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 998875432 37899999999887632 1 223678999999999998777778888899999
Q ss_pred EEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEE
Q 045323 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622 (740)
Q Consensus 543 L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 622 (740)
|++++|.+.+..|..+. ..+++|+.|
T Consensus 149 L~Ls~N~l~~~~~~~~~------------------------------------------------------~~l~~L~~L 174 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELA------------------------------------------------------ASSDTLEHL 174 (317)
T ss_dssp EECTTSCCCEEEGGGGG------------------------------------------------------GGTTTCCEE
T ss_pred EECCCCCCCcccHHHHh------------------------------------------------------hccCcCCEE
Confidence 99999988754433221 134589999
Q ss_pred EcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccc
Q 045323 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 623 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
++++|.+++. +. ...+++|++|+|++|++++..+ .+..+++|+.|++++|+++ .+|+.+..+++|+.|++++|++.
T Consensus 175 ~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 175 NLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999854 32 3458999999999999996544 4888999999999999998 56778888999999999999998
Q ss_pred -cCCCCcccCCCCcccccccc
Q 045323 703 -GKTPDRVAQFGTFEEDSYEG 722 (740)
Q Consensus 703 -~~~~~~~~~~~~l~~l~l~~ 722 (740)
+..|..+..++.|+.+++++
T Consensus 251 ~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 251 CGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred CcCHHHHHhccccceEEECCC
Confidence 77788888889999999883
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-26 Score=233.54 Aligned_cols=158 Identities=24% Similarity=0.291 Sum_probs=112.6
Q ss_pred CCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcc
Q 045323 514 PQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNY 593 (740)
Q Consensus 514 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~ 593 (740)
++|++|++++|.+.+..+..+..+++|+.|++++|++.+.++..
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------------ 192 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI------------------------------------ 192 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH------------------------------------
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH------------------------------------
Confidence 67777777777777666677777778888888877764321100
Q ss_pred cccceeeeeeeccccceeecccCCCccEEEcccCcccc---cChhhhhcCCCCcEEECcCCcCcccCC-ccccCCCCCCE
Q 045323 594 HNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG---EIPLQIGELSRIHTLNLSHNNLTGESP-VTFSHMKQVES 669 (740)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~---~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~ 669 (740)
....+..+++|+.|++++|++.+ .....+..+++|++|+|++|++++..| ..+..+++|+.
T Consensus 193 ---------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 193 ---------------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp ---------------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred ---------------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 00011344578888888888762 122334567888888888888887664 45566788889
Q ss_pred EeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 670 LDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 670 L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
|+|++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+++++++||+..
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999998888 6676665 7888899999988877 55 7888888889999888753
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=213.70 Aligned_cols=208 Identities=25% Similarity=0.253 Sum_probs=165.4
Q ss_pred hcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCccccc
Q 045323 450 FCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGE 529 (740)
Q Consensus 450 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 529 (740)
+.+++++++++++++.++...+.. ++.++.|++++|.+++ ..+..+..+++|+.|++++|.+++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYT-------------FSLATLMPYTRLTQLNLDRAELTKL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSE-------------EEGGGGTTCTTCCEEECTTSCCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCc-------------cCHHHhhcCCCCCEEECCCCccCcc
Confidence 345566666666666665332222 3566777777666542 3356678899999999999999854
Q ss_pred CCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccc
Q 045323 530 MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLY 609 (740)
Q Consensus 530 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 609 (740)
.+ ...+++|+.|++++|.+. .+|..+
T Consensus 71 ~~--~~~l~~L~~L~Ls~N~l~-~l~~~~--------------------------------------------------- 96 (290)
T 1p9a_G 71 QV--DGTLPVLGTLDLSHNQLQ-SLPLLG--------------------------------------------------- 96 (290)
T ss_dssp EC--CSCCTTCCEEECCSSCCS-SCCCCT---------------------------------------------------
T ss_pred cC--CCCCCcCCEEECCCCcCC-cCchhh---------------------------------------------------
Confidence 33 367899999999999886 344322
Q ss_pred eeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCC
Q 045323 610 TYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELN 689 (740)
Q Consensus 610 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 689 (740)
..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..+..++
T Consensus 97 ----~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 97 ----QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp ----TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred ----ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 2345899999999999977778899999999999999999988888899999999999999999976667788899
Q ss_pred cCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 690 ALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 690 ~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
+|+.|++++|+++.. |..+....+|+.+++++|||.|+|.+
T Consensus 173 ~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 173 NLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccCcCcc
Confidence 999999999999965 55556778999999999999999974
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=230.36 Aligned_cols=246 Identities=25% Similarity=0.333 Sum_probs=143.9
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
+|++|++++|.++. ++. .+++|++|++++|++++ +|. .+++|++|++++|.+++ ++. .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 45555555555542 222 23555555555555542 222 34555555665555553 222 34555666666
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcE
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 518 (740)
+|.++. +|. .+++|++|++++|.+.+. +. .+.+|+.|++++|.++ .+| ..+++|+.
T Consensus 130 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~--~~~~L~~L~L~~N~l~--------------~l~---~~~~~L~~ 185 (622)
T 3g06_A 130 GNQLTS-LPV---LPPGLQELSVSDNQLASL-PA--LPSELCKLWAYNNQLT--------------SLP---MLPSGLQE 185 (622)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCS--------------CCC---CCCTTCCE
T ss_pred CCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC--ccCCCCEEECCCCCCC--------------CCc---ccCCCCcE
Confidence 665553 222 235666666666666532 21 2456666666666654 223 23566777
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccce
Q 045323 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598 (740)
Q Consensus 519 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 598 (740)
|++++|.+++ +|. .+++|+.|++++|.+.. +|.
T Consensus 186 L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~------------------------------------------ 218 (622)
T 3g06_A 186 LSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA------------------------------------------ 218 (622)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC------------------------------------------
T ss_pred EECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC------------------------------------------
Confidence 7777777763 332 23677777777776652 221
Q ss_pred eeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.+++|+.|++++|++++ +| ..+++|++|+|++|+++ .+|. .+++|+.|+|++|+++
T Consensus 219 ----------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 219 ----------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp ----------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC
T ss_pred ----------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC
Confidence 11367777777777764 44 34577778888888777 3443 4567778888888777
Q ss_pred ccCCcccccCCcCceeeccCcccccCCCCcccCC
Q 045323 679 GKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQF 712 (740)
Q Consensus 679 ~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~ 712 (740)
.+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 275 -~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp -SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred -cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 667777777788888888888777766654444
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=236.19 Aligned_cols=224 Identities=20% Similarity=0.155 Sum_probs=191.5
Q ss_pred CCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCC
Q 045323 426 LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSN 505 (740)
Q Consensus 426 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 505 (740)
...+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l------------- 95 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL------------- 95 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-------------
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-------------
Confidence 3456799999999999998888999999999999999999987665 67799999999999998732
Q ss_pred CCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchh
Q 045323 506 IPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQ 585 (740)
Q Consensus 506 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 585 (740)
+ ..++|+.|++++|.+.+..+. .+++|+.|++++|.+.+..|..+..
T Consensus 96 -~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------------- 142 (487)
T 3oja_A 96 -L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------------- 142 (487)
T ss_dssp -E----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-------------------------
T ss_pred -C----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-------------------------
Confidence 2 238999999999999865543 4689999999999998765554433
Q ss_pred hHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhh-cCCCCcEEECcCCcCcccCCccccCC
Q 045323 586 LQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIG-ELSRIHTLNLSHNNLTGESPVTFSHM 664 (740)
Q Consensus 586 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~l~~l 664 (740)
+++|+.|++++|.+.+..|..+. .+++|++|+|++|.+++..+ +..+
T Consensus 143 ------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l 190 (487)
T 3oja_A 143 ------------------------------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVF 190 (487)
T ss_dssp ------------------------------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCC
T ss_pred ------------------------------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccC
Confidence 34899999999999988888886 79999999999999997643 3468
Q ss_pred CCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 665 KQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 665 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
++|+.|+|++|.+++. |+.+..+++|+.|++++|.+++. |..+..+++|+.+++++||+.|++.
T Consensus 191 ~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred CCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcch
Confidence 9999999999999965 44588999999999999999985 5557899999999999999998764
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-27 Score=263.30 Aligned_cols=411 Identities=15% Similarity=0.132 Sum_probs=201.4
Q ss_pred CCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCccccc--CCCCCCCCCCCCEEEccCCcccccCchhhh---hc
Q 045323 253 HQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGP--FPLPIHCHKNLRVLDVSNNKLQGHIPIEIG---EV 327 (740)
Q Consensus 253 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~---~~ 327 (740)
.+++|++|++++|.+.+..+..+...+++|++|++.+|..... .+.....+++|++|++++|.+++..+..+. ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4455555555555554444444333455555555555522111 122223445555555555554433222221 12
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCc-------ceecCCc
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNH-------FIGDIPK 400 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------~~~~~~~ 400 (740)
+++|++|++++|. .......+..+.. .+++|++|++++|......+..+..+++|+.|++..+. +.+ ++.
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~-~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~ 259 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVT-RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV 259 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHH-HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHH-hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence 3455555555553 0000011111000 12355555555552111233334445555555543332 111 111
Q ss_pred CCCCCCCCceE-eCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCch-hhhcCCCCCCEEECCCCcCcc-cCCCCC-CC
Q 045323 401 TLSNCSALQGL-YISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNNISG-SLPSCS-SP 476 (740)
Q Consensus 401 ~l~~~~~L~~L-~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~-~~~~~~-~~ 476 (740)
.+.++++|+.+ .+.+.... .++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.. .++... .+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 33445555555 22221111 222223345666667776666543222 22446666777766666 221 111111 25
Q ss_pred CcccEEEcCCCcccCcCccccCCCcCCCCCC-cccCCCCCCcEEecccCcccccCCcccc-CCCCCCEEEcc--C----C
Q 045323 477 FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIP-DWMNRLPQLRYLILANNGLEGEMPLQLC-WLNKLQLVDLS--H----N 548 (740)
Q Consensus 477 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~--~----n 548 (740)
++|++|++.++.-.+ ....+.+++... .....+++|+.|.++.+.+++.....+. .+++|+.|+++ + +
T Consensus 338 ~~L~~L~L~~~~~~g----~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 338 KDLRELRVFPSEPFV----MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp TTCCEEEEECSCTTC----SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred CCCCEEEEecCcccc----cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 566666663321000 000111111111 1112356677776666666644333333 36677777776 2 1
Q ss_pred cCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCc
Q 045323 549 NLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNK 628 (740)
Q Consensus 549 ~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 628 (740)
.+++ .|. . .. +. ..+..+++|+.|++++ .
T Consensus 414 ~l~~-~~~--------------------~---~~---~~-----------------------~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 414 YLTL-EPL--------------------D---IG---FG-----------------------AIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp TTTC-CCT--------------------H---HH---HH-----------------------HHHHHCTTCCEEECCS-S
T ss_pred cccC-Cch--------------------h---hH---HH-----------------------HHHhhCCCccEEeecC-c
Confidence 2210 000 0 00 00 0123456899999987 6
Q ss_pred ccccChhhhhc-CCCCcEEECcCCcCcccCCccc-cCCCCCCEEeCCCCccCccCCc-ccccCCcCceeeccCcccccCC
Q 045323 629 LIGEIPLQIGE-LSRIHTLNLSHNNLTGESPVTF-SHMKQVESLDLSYNNLNGKIPP-RLIELNALAVFSVAFNNLSGKT 705 (740)
Q Consensus 629 l~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~N~l~~~~ 705 (740)
+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|+.|++++|+++...
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 76666666665 8999999999999987655555 6689999999999999754443 4445889999999999884332
Q ss_pred CCcc-cCCCCccccccccC
Q 045323 706 PDRV-AQFGTFEEDSYEGN 723 (740)
Q Consensus 706 ~~~~-~~~~~l~~l~l~~N 723 (740)
...+ ..++.+....+.++
T Consensus 523 ~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 523 CKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHhCCCCEEEEecCC
Confidence 2222 34466655455544
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=223.74 Aligned_cols=258 Identities=24% Similarity=0.281 Sum_probs=208.9
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.+++|++++|.++ .+|..+. ++|+.|++++|.+.. +|. .+++|++|++++|.++. +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 5788888888887 4454444 799999999999884 444 46899999999999984 554 77999999999
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcE
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 518 (740)
+|.++.. |. .+++|+.|++++|+++. +|. .+++|+.|++++|++++ +|. ..++|+.
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~--------------l~~---~~~~L~~ 165 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLAS--------------LPA---LPSELCK 165 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC--------------CCC---CCTTCCE
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCC--CCCCCCEEECcCCcCCC--------------cCC---ccCCCCE
Confidence 9999854 33 67899999999999985 333 25899999999998863 232 3478999
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccce
Q 045323 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598 (740)
Q Consensus 519 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 598 (740)
|++++|.++. +| ..+++|+.|++++|.+.+ +|.
T Consensus 166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~------------------------------------------ 198 (622)
T 3g06_A 166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT------------------------------------------ 198 (622)
T ss_dssp EECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC------------------------------------------
T ss_pred EECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC------------------------------------------
Confidence 9999999985 44 457899999999999863 221
Q ss_pred eeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.+++|+.|++++|.+. .+|. .+++|++|+|++|++++ +| ..+++|+.|+|++|+++
T Consensus 199 ----------------~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 199 ----------------LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp ----------------CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred ----------------ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 1247999999999998 5554 35899999999999995 55 45689999999999999
Q ss_pred ccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 679 GKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 679 ~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
.+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++||+..
T Consensus 255 -~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 255 -SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 5665 5688999999999999 457778999999999999999864
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-25 Score=227.75 Aligned_cols=248 Identities=23% Similarity=0.284 Sum_probs=158.1
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCccee-cCCcCCC-------CCCCCceEeCCCcccccCCCcCC--CC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIG-DIPKTLS-------NCSALQGLYISDNNISGNIPTRL--GN 428 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~-------~~~~L~~L~l~~n~i~~~~~~~~--~~ 428 (740)
+|+++++++|.+ ..|..+... |+.|++++|.+.. ..+..+. .+++|++|++++|.+++..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 466666666666 334333322 6666666666632 3333222 45677777777777766666554 66
Q ss_pred CCCCCEEeCCCCcCcCCchhhhcCC-----CCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCC
Q 045323 429 LSFLDAIMMPNNRLEGPIPSAFCQL-----RHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLN 503 (740)
Q Consensus 429 l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 503 (740)
+++|++|++++|.+++. |..+..+ ++|++|++++|++.+.
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~---------------------------------- 164 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF---------------------------------- 164 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC----------------------------------
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc----------------------------------
Confidence 77777777777777655 5555444 6666666666655522
Q ss_pred CCCCcccCCCCCCcEEecccCccccc--CCccc--cCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchh
Q 045323 504 SNIPDWMNRLPQLRYLILANNGLEGE--MPLQL--CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQI 579 (740)
Q Consensus 504 ~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~--~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 579 (740)
.+..++.+++|++|++++|++.+. .+..+ ..+++|+.|++++|.+.+. +...
T Consensus 165 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~--------------------- 220 (312)
T 1wwl_A 165 --SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGVC--------------------- 220 (312)
T ss_dssp --CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HHHH---------------------
T ss_pred --hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HHHH---------------------
Confidence 234556677777777777776543 12223 6677888888888776521 1000
Q ss_pred hccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccCh-hhhhcCCCCcEEECcCCcCcccCC
Q 045323 580 LYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIP-LQIGELSRIHTLNLSHNNLTGESP 658 (740)
Q Consensus 580 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~ 658 (740)
...+..+++|+.|++++|++.+..| ..+..+++|++|+|++|+++ .+|
T Consensus 221 ------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 221 ------------------------------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp ------------------------------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred ------------------------------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 0001234578888888888876654 34556788889999998888 666
Q ss_pred ccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccC
Q 045323 659 VTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGK 704 (740)
Q Consensus 659 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 704 (740)
..+. ++|++|+|++|++++. |. +..+++|+.|++++|++++.
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 6665 7889999999998855 55 88888999999999988753
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-26 Score=261.45 Aligned_cols=441 Identities=14% Similarity=0.090 Sum_probs=257.0
Q ss_pred CCCccccceEecCCCCceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCc----ccc
Q 045323 26 NHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSN----SFL 101 (740)
Q Consensus 26 ~~~c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~----~~~ 101 (740)
.-|++|.++.. .....+++..... ..+...+.++++|++|+++++.. +....+. ...+.+ .+.
T Consensus 32 ~vck~W~~~~~----~~~~~l~~~~~~~------~~~~~~~~~~~~L~~L~L~~~~~--~~~~~l~-~~~~~~~~~~~l~ 98 (594)
T 2p1m_B 32 LVCKSWYEIER----WCRRKVFIGNCYA------VSPATVIRRFPKVRSVELKGKPH--FADFNLV-PDGWGGYVYPWIE 98 (594)
T ss_dssp TSCHHHHHHHH----HHCCEEEESSTTS------SCHHHHHHHCTTCCEEEEECSCG--GGGGTCS-CTTSCCBCHHHHH
T ss_pred HHHHHHHHhhh----hhceEEeeccccc------cCHHHHHhhCCCceEEeccCCCc--hhhcccc-cccccchhhHHHH
Confidence 56777888721 2334555554322 22345677888899998887421 1111110 001111 112
Q ss_pred hhcccCCCCCEEECCCCCCCCccChhhhc-CCCCCCEEEccCC-ccccc-ccccCcCCCCCCEEEcCCCCCCCCCCc---
Q 045323 102 QMSELMASLKYLSLSNSYLNGTILDQGLC-ELVYLQEVNIDRN-NLSGS-LPWCLANLTYLRLLDVSFNQLTENISS--- 175 (740)
Q Consensus 102 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~i~~--- 175 (740)
.....+++|++|++++|.+++..+. .+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+.
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 2234567777777777776543332 333 5677777777777 34322 333344677777777777765542221
Q ss_pred cccCCCCCCCEEeccCCcccccCCccc----cccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCC------C
Q 045323 176 SPLMNLTYIEELWLSNNHFQISISLEP----FFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDS------G 245 (740)
Q Consensus 176 ~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~ 245 (740)
.....+++|++|++++|. +.+.... ..++++|+.|++..+.........+..+++|+.|.+..+... .
T Consensus 178 ~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 022356677777777765 1122121 234577777777664322221122233457777776554321 0
Q ss_pred CCChhhcCCCCCCEE-EcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccC-CCCCCCCCCCCEEEccCCcccccCchh
Q 045323 246 IFPKFLYHQHDLEYV-DLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPF-PLPIHCHKNLRVLDVSNNKLQGHIPIE 323 (740)
Q Consensus 246 ~~~~~l~~l~~L~~L-~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~~ 323 (740)
.++..+.++++|+.| .+.+... +.++.. ...+++|++|++++|.+.... ...+..+++|++|++++| +.+.....
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~-~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVP-AYLPAV-YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCG-GGGGGG-HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccch-hhHHHH-HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 123456778888888 3443322 233332 346788888888888754322 223457788888988887 44333344
Q ss_pred hhhcCCCCcEEeccCC---------cccccCCCCccCcCccccCCccEEEccCCCCCCcCccccc-CCCCCCeeecC--C
Q 045323 324 IGEVLPNLVVLNVATN---------AFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLD--G 391 (740)
Q Consensus 324 ~~~~l~~L~~L~l~~n---------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~ 391 (740)
+...+++|++|++.++ .+++.....+.. .+++|++|.+..+.+++.....+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~----~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM----GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH----HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH----hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 4445788999888442 333221111111 245889998888888765444444 57889999988 3
Q ss_pred ----Ccceec-----CCcCCCCCCCCceEeCCCcccccCCCcCCCC-CCCCCEEeCCCCcCcCCchhhh-cCCCCCCEEE
Q 045323 392 ----NHFIGD-----IPKTLSNCSALQGLYISDNNISGNIPTRLGN-LSFLDAIMMPNNRLEGPIPSAF-CQLRHLEILD 460 (740)
Q Consensus 392 ----n~~~~~-----~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~ 460 (740)
+.++.. ++..+..+++|++|++++ .+++.....+.. +++|+.|++++|.+++.....+ .++++|++|+
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 333311 111245678899999977 555443334444 7889999999998876555555 6789999999
Q ss_pred CCCCcCcccCC--CCCCCCcccEEEcCCCccc
Q 045323 461 LSRNNISGSLP--SCSSPFNIRRVHLSKNMLQ 490 (740)
Q Consensus 461 l~~n~~~~~~~--~~~~~~~L~~L~l~~n~i~ 490 (740)
+++|.+++... ....+++|+.|++++|+++
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 99999854322 1223789999999999874
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=200.43 Aligned_cols=86 Identities=23% Similarity=0.240 Sum_probs=41.1
Q ss_pred CccEEEcccCcccccChhhhhcCCCCc----EEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCce
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIH----TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAV 693 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~----~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 693 (740)
+|+.|++++|++.+..+..+..+++|+ +|++++|++++..+..+.. .+|+.|++++|++++..+..+..+++|+.
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccE
Confidence 344444444444433333444443333 5555555555444444332 24555555555555444444455555555
Q ss_pred eeccCcccccC
Q 045323 694 FSVAFNNLSGK 704 (740)
Q Consensus 694 L~ls~N~l~~~ 704 (740)
|++++|++.+.
T Consensus 229 L~l~~N~~~c~ 239 (276)
T 2z62_A 229 IWLHTNPWDCS 239 (276)
T ss_dssp EECCSSCBCCC
T ss_pred EEccCCccccc
Confidence 55555555543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=196.50 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=61.7
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 45555555555554444445555555555555555554444455555555555555555554444455555555555555
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCG 728 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~ 728 (740)
+|++++.++..+..+++|+.+++++||+.|+
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555555555555555555555555555555
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=193.05 Aligned_cols=117 Identities=25% Similarity=0.263 Sum_probs=77.1
Q ss_pred cccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhH
Q 045323 508 DWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQ 587 (740)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 587 (740)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---------------------------- 154 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD---------------------------- 154 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------------
T ss_pred hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc----------------------------
Confidence 3456677777777777777766666677777777777777776533222222
Q ss_pred HhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCC
Q 045323 588 ILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQV 667 (740)
Q Consensus 588 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 667 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|
T Consensus 155 ---------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 155 ---------------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ---------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ---------------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 23366777777777765555556667777777777777776666666667777
Q ss_pred CEEeCCCCccCc
Q 045323 668 ESLDLSYNNLNG 679 (740)
Q Consensus 668 ~~L~Ls~n~l~~ 679 (740)
+.|+|++|++..
T Consensus 208 ~~L~l~~N~~~c 219 (270)
T 2o6q_A 208 KMLQLQENPWDC 219 (270)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeeC
Confidence 777777777653
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=196.19 Aligned_cols=199 Identities=21% Similarity=0.208 Sum_probs=122.4
Q ss_pred CEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCC
Q 045323 433 DAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNR 512 (740)
Q Consensus 433 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~ 512 (740)
..+++..+.+.+. ..+..+++|+.|++++|.+. .++.+..+++|+.|++++|.+++ + ..+..
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~--------------~-~~l~~ 83 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHD--------------I-SALKE 83 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCC--------------C-GGGTT
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCC--------------c-hhhcC
Confidence 3444444444432 22446778888888888876 44455556777777777766542 1 24556
Q ss_pred CCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhc
Q 045323 513 LPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTN 592 (740)
Q Consensus 513 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 592 (740)
+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..+.
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------------------------------- 130 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD--------------------------------- 130 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT---------------------------------
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc---------------------------------
Confidence 66777777777776655555566667777777777766543332222
Q ss_pred ccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeC
Q 045323 593 YHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672 (740)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 672 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|+.+++|+.|++
T Consensus 131 ----------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 131 ----------------------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp ----------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ----------------------cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 2236666666666666555555566666666666666666655555666666666666
Q ss_pred CCCccCccCCcccccCCcCceeeccCcccccC
Q 045323 673 SYNNLNGKIPPRLIELNALAVFSVAFNNLSGK 704 (740)
Q Consensus 673 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 704 (740)
++|++++..|..+..+++|+.|++++|++.+.
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 66666665555566666666666666666543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=193.96 Aligned_cols=203 Identities=23% Similarity=0.175 Sum_probs=145.7
Q ss_pred CCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEE
Q 045323 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482 (740)
Q Consensus 403 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 482 (740)
..++++++++++++.++ .+|..+. +.++.|++++|.++...+..|.++++|++|++++|.+++..+ ...+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEE
Confidence 44566777777777666 3444332 567777777777776667777777888888888887774333 3456777777
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 562 (740)
++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|.+.+..+..|.
T Consensus 83 ~Ls~N~l~--------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--- 145 (290)
T 1p9a_G 83 DLSHNQLQ--------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT--- 145 (290)
T ss_dssp ECCSSCCS--------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT---
T ss_pred ECCCCcCC--------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc---
Confidence 77777665 4566677788888888888888866667788888888888888888744333222
Q ss_pred cccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCC
Q 045323 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR 642 (740)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 642 (740)
.+++|+.|++++|++++..+..|..+++
T Consensus 146 ----------------------------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 146 ----------------------------------------------------PTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp ----------------------------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred ----------------------------------------------------cccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 2347888888888887655566777888
Q ss_pred CcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc
Q 045323 643 IHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 643 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
|++|+|++|+++ .+|..+...++|+.|+|++|++..
T Consensus 174 L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 888888888888 566666677788888888888763
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=193.62 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=151.8
Q ss_pred CCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEE
Q 045323 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482 (740)
Q Consensus 403 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 482 (740)
..+++|+.|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-------------- 99 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-------------- 99 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC--------------
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc--------------
Confidence 3445666666666655521 2345555566666665555532 244555555555555554442
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 562 (740)
..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 100 ----------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--- 154 (272)
T 3rfs_A 100 ----------------------LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD--- 154 (272)
T ss_dssp ----------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---
T ss_pred ----------------------cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc---
Confidence 2234466778888888888888866666778888888888888888754443322
Q ss_pred cccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCC
Q 045323 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR 642 (740)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 642 (740)
.+++|+.|++++|++++..+..|..+++
T Consensus 155 ----------------------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 155 ----------------------------------------------------KLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp ----------------------------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ----------------------------------------------------cCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 3348888999999998777777889999
Q ss_pred CcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCC
Q 045323 643 IHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGT 714 (740)
Q Consensus 643 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~ 714 (740)
|++|+|++|++++..+..|..+++|+.|++++|++.+. ++.|+.++++.|.++|.+|..++.++.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 99999999999988888899999999999999998854 457999999999999999987766543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-22 Score=210.88 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=54.9
Q ss_pred EEccCCCCCCcCcccccCCCCCCeeecCCCcceecCC----cCCCCCC-CCceEeCCCcccccCCCcCCCCC-----CCC
Q 045323 363 LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP----KTLSNCS-ALQGLYISDNNISGNIPTRLGNL-----SFL 432 (740)
Q Consensus 363 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~~~-~L~~L~l~~n~i~~~~~~~~~~l-----~~L 432 (740)
++++.|.+++..+..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555444444444446666666666554433 3444455 56666666666554444433332 556
Q ss_pred CEEeCCCCcCcCCchhh----hcCC-CCCCEEECCCCcCc
Q 045323 433 DAIMMPNNRLEGPIPSA----FCQL-RHLEILDLSRNNIS 467 (740)
Q Consensus 433 ~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~ 467 (740)
++|++++|.+++..+.. +..+ ++|++|++++|.+.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 66666666655444442 2233 56666666666654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-22 Score=211.63 Aligned_cols=262 Identities=18% Similarity=0.173 Sum_probs=192.4
Q ss_pred eeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCC----cCCCCCC-CCCEEeCCCCcCcCCchhhhcCC-----CC
Q 045323 386 RLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP----TRLGNLS-FLDAIMMPNNRLEGPIPSAFCQL-----RH 455 (740)
Q Consensus 386 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~ 455 (740)
.+++++|.+.+.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788888888777766666779999999999987665 6777888 89999999999998777777664 99
Q ss_pred CCEEECCCCcCcccCCC-----CCCC-CcccEEEcCCCcccCcCccccCCCcCCCCCCcccCC-CCCCcEEecccCcccc
Q 045323 456 LEILDLSRNNISGSLPS-----CSSP-FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNR-LPQLRYLILANNGLEG 528 (740)
Q Consensus 456 L~~L~l~~n~~~~~~~~-----~~~~-~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~-~~~L~~L~ls~n~l~~ 528 (740)
|++|++++|.+.+..+. +..+ ++|+.|++++|.+++..... +...+.. .++|++|++++|.+++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~---------l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE---------FKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH---------HHHHHTTSCTTCCEEECTTSCGGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH---------HHHHHHhCCCceeEEEccCCcCCH
Confidence 99999999998865543 2233 78999999999886432211 1122444 3689999999999885
Q ss_pred cCC----ccccCCC-CCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeee
Q 045323 529 EMP----LQLCWLN-KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFT 603 (740)
Q Consensus 529 ~~~----~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 603 (740)
... ..+..++ +|+.|++++|.+++..+..+...
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~------------------------------------------ 190 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF------------------------------------------ 190 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH------------------------------------------
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH------------------------------------------
Confidence 433 3345555 99999999998875544333221
Q ss_pred eccccceeecccC-CCccEEEcccCccccc----Chhhhhc-CCCCcEEECcCCcCcccCC----ccccCCCCCCEEeCC
Q 045323 604 TKQRLYTYEVQPL-HSMSGLDLSCNKLIGE----IPLQIGE-LSRIHTLNLSHNNLTGESP----VTFSHMKQVESLDLS 673 (740)
Q Consensus 604 ~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~----~~~~l~~-l~~L~~L~L~~N~l~~~~~----~~l~~l~~L~~L~Ls 673 (740)
+... ++|+.||+++|.+.+. ++..+.. .++|++|+|++|.+++..+ ..+..+++|+.|+|+
T Consensus 191 ---------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 191 ---------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp ---------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred ---------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 1222 3899999999998864 4455555 4599999999999987554 445677899999999
Q ss_pred CCccCcc-------CCcccccCCcCceeeccCcccccCCCC
Q 045323 674 YNNLNGK-------IPPRLIELNALAVFSVAFNNLSGKTPD 707 (740)
Q Consensus 674 ~n~l~~~-------~~~~l~~l~~L~~L~ls~N~l~~~~~~ 707 (740)
+|.+.+. ++..+..+++|+.||+++|++....+.
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 9985533 334667788899999999998766443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-21 Score=186.84 Aligned_cols=200 Identities=15% Similarity=0.120 Sum_probs=137.7
Q ss_pred CCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCc-CcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcc
Q 045323 431 FLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNN-ISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDW 509 (740)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~ 509 (740)
+|++|++++|.++...+..|.++++|++|++++|+ +.. ..+..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~------------------------------------i~~~~ 75 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ------------------------------------LESHS 75 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE------------------------------------ECTTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce------------------------------------eCHhH
Confidence 55555555555554444455555666666665554 431 11234
Q ss_pred cCCCCCCcEEeccc-CcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHH
Q 045323 510 MNRLPQLRYLILAN-NGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588 (740)
Q Consensus 510 ~~~~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 588 (740)
|..+++|++|++++ |.++...+..|..+++|+.|++++|++.+ +|. +..+.
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~-------------------------- 127 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY-------------------------- 127 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC--------------------------
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc--------------------------
Confidence 56677788888877 77776666677778888888888887763 332 22211
Q ss_pred hhhcccccceeeeeeeccccceeecccCCCccEEEcccC-cccccChhhhhcCCCCc-EEECcCCcCcccCCccccCCCC
Q 045323 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCN-KLIGEIPLQIGELSRIH-TLNLSHNNLTGESPVTFSHMKQ 666 (740)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~ 666 (740)
.+..|+.|++++| ++.+..+..|..+++|+ +|++++|+++...+..|.. ++
T Consensus 128 --------------------------~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~ 180 (239)
T 2xwt_C 128 --------------------------STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK 180 (239)
T ss_dssp --------------------------BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE
T ss_pred --------------------------ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC
Confidence 1112338888888 88766677788888999 9999999888555556655 78
Q ss_pred CCEEeCCCCc-cCccCCcccccC-CcCceeeccCcccccCCCCcccCCCCccccccccCC
Q 045323 667 VESLDLSYNN-LNGKIPPRLIEL-NALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNP 724 (740)
Q Consensus 667 L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np 724 (740)
|+.|++++|+ ++...+..+..+ ++|+.|++++|++++.++. .+++|+.|++++++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9999999995 887777788888 8899999999998866554 67788888888764
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-22 Score=204.21 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=174.6
Q ss_pred CccEEEccCCCCCCcCcccccCC--CCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccC-CCcCCCCCCCCCEE
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNL--TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN-IPTRLGNLSFLDAI 435 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L 435 (740)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777776655 2333444 6677777777776655444 34567777777777766543 45556667777777
Q ss_pred eCCCCcCcCCchhhhcCCCCCCEEECCCC-cCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCC
Q 045323 436 MMPNNRLEGPIPSAFCQLRHLEILDLSRN-NISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLP 514 (740)
Q Consensus 436 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~ 514 (740)
++++|.+++..+..+..+++|++|++++| .+++. .++..+..++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------------------------~l~~~~~~~~ 168 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------------------------ALQTLLSSCS 168 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------------------------HHHHHHHHCT
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------------------------HHHHHHhcCC
Confidence 77777766566666666777777777766 33310 1234466678
Q ss_pred CCcEEecccC-ccccc-CCccccCCC-CCCEEEccCCc--Cc-CCCCccccccccccccCCCCccCCCchhhccchhhHH
Q 045323 515 QLRYLILANN-GLEGE-MPLQLCWLN-KLQLVDLSHNN--LS-GQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588 (740)
Q Consensus 515 ~L~~L~ls~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 588 (740)
+|++|++++| .+++. .+..+..++ +|+.|++++|. ++ +.+|.
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-------------------------------- 216 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-------------------------------- 216 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH--------------------------------
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH--------------------------------
Confidence 8888888888 77754 455677788 99999999884 32 11111
Q ss_pred hhhcccccceeeeeeeccccceeecccCCCccEEEcccCc-ccccChhhhhcCCCCcEEECcCCc-CcccCCccccCCCC
Q 045323 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNK-LIGEIPLQIGELSRIHTLNLSHNN-LTGESPVTFSHMKQ 666 (740)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~ 666 (740)
.+..+++|+.|++++|. +++..+..+..+++|++|+|++|. ++......++.+++
T Consensus 217 -----------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 217 -----------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp -----------------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred -----------------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 11235689999999998 676778889999999999999995 44333346788999
Q ss_pred CCEEeCCCCccCccCCcccccC-CcCceeeccCcccccCCCCcccC
Q 045323 667 VESLDLSYNNLNGKIPPRLIEL-NALAVFSVAFNNLSGKTPDRVAQ 711 (740)
Q Consensus 667 L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~~~~~~~ 711 (740)
|+.|++++| ++. +.+..+ ..|+.|++++|++++..|..++.
T Consensus 274 L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 274 LKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 999999999 432 344444 35888889999999999887654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-23 Score=217.06 Aligned_cols=248 Identities=19% Similarity=0.239 Sum_probs=146.3
Q ss_pred ccccCCCCCCeeecCCCcceecC----CcCCCCCCCCceEeCCCcccc---cCCCcCC-------CCCCCCCEEeCCCCc
Q 045323 376 SKEFNLTKLKRLNLDGNHFIGDI----PKTLSNCSALQGLYISDNNIS---GNIPTRL-------GNLSFLDAIMMPNNR 441 (740)
Q Consensus 376 ~~~~~l~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~i~---~~~~~~~-------~~l~~L~~L~l~~n~ 441 (740)
..+..+++|++|++++|.+.... +..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 44455677777777777766542 234566777777777775433 2333332 566777777777777
Q ss_pred CcC----CchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCC----
Q 045323 442 LEG----PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRL---- 513 (740)
Q Consensus 442 ~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~---- 513 (740)
++. .++..+..+++|++|++++|.+....+. .++..+..+
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--------------------------------~l~~~l~~l~~~~ 153 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--------------------------------KIARALQELAVNK 153 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--------------------------------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--------------------------------HHHHHHHHHhhhh
Confidence 765 2555666677777777777766421110 011112222
Q ss_pred -----CCCcEEecccCcccc-cCC---ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccch
Q 045323 514 -----PQLRYLILANNGLEG-EMP---LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLP 584 (740)
Q Consensus 514 -----~~L~~L~ls~n~l~~-~~~---~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 584 (740)
++|++|++++|+++. ..+ ..+..+++|+.|++++|.+.......+
T Consensus 154 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l-------------------------- 207 (386)
T 2ca6_A 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-------------------------- 207 (386)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH--------------------------
T ss_pred hcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH--------------------------
Confidence 566777777776652 222 245556677777777776541000000
Q ss_pred hhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccc----ccChhhhhcCCCCcEEECcCCcCccc----
Q 045323 585 QLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI----GEIPLQIGELSRIHTLNLSHNNLTGE---- 656 (740)
Q Consensus 585 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~----~~~~~~l~~l~~L~~L~L~~N~l~~~---- 656 (740)
....+..+++|+.|++++|.+. ..+|..+..+++|++|+|++|.+++.
T Consensus 208 ------------------------~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 208 ------------------------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp ------------------------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred ------------------------HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 0001223446777777777764 45666677777777777777777754
Q ss_pred CCcccc--CCCCCCEEeCCCCccCc----cCCccc-ccCCcCceeeccCcccccCC
Q 045323 657 SPVTFS--HMKQVESLDLSYNNLNG----KIPPRL-IELNALAVFSVAFNNLSGKT 705 (740)
Q Consensus 657 ~~~~l~--~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~ls~N~l~~~~ 705 (740)
++..+. .+++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 345553 36777777777777775 366655 45677777777777777665
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=189.30 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=32.6
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
++|+.|++++|++.+..+ +..+++|++|+|++|++++..+ +..+++|+.|++++|+++
T Consensus 173 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 356666666666653222 5556666666666666654332 455566666666666665
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=180.95 Aligned_cols=158 Identities=22% Similarity=0.296 Sum_probs=132.8
Q ss_pred cEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhccccc
Q 045323 517 RYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596 (740)
Q Consensus 517 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 596 (740)
+.++++++.++ .+|..+. ++|+.|++++|.+.+..+..|.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~------------------------------------- 53 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFS------------------------------------- 53 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSST-------------------------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhh-------------------------------------
Confidence 46777777776 4454332 6788888888887644333332
Q ss_pred ceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCc
Q 045323 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676 (740)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~ 676 (740)
.+++|+.|++++|++.+..|..|.++++|++|+|++|+++...+..|..+++|+.|+|++|+
T Consensus 54 ------------------~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 54 ------------------PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp ------------------TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence 33478888999999888888999999999999999999997777888999999999999999
Q ss_pred cCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 677 LNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 677 l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|||.|+|.+.
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 99888899999999999999999999999988999999999999999999999863
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=192.06 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=149.6
Q ss_pred CCCCEEECCCCcCcccCCCC---CCCCcccEEEcCCCcccCcCccccCCCcCCCCCC-cccCCCCCCcEEecccCccccc
Q 045323 454 RHLEILDLSRNNISGSLPSC---SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIP-DWMNRLPQLRYLILANNGLEGE 529 (740)
Q Consensus 454 ~~L~~L~l~~n~~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~ 529 (740)
++|++|++++|.+.+..+.. ..+++|++|++++|.+++..+ .++ ..+..+++|++|++++|.+.+.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~----------~~~~~~~~~~~~L~~L~Ls~n~l~~~ 160 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS----------WLAELQQWLKPGLKVLSIAQAHSPAF 160 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS----------SHHHHHTTBCSCCCEEEEECCSSCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh----------hhHHHHhhhccCCCEEEeeCCCcchh
Confidence 44666666666665554443 335666666666665542110 001 2344688999999999999877
Q ss_pred CCccccCCCCCCEEEccCCcCcCC--CCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccc
Q 045323 530 MPLQLCWLNKLQLVDLSHNNLSGQ--IPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQR 607 (740)
Q Consensus 530 ~~~~~~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 607 (740)
.+..+..+++|++|++++|++.+. ++.
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------------------------------------- 189 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMA--------------------------------------------------- 189 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHT---------------------------------------------------
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhH---------------------------------------------------
Confidence 778888999999999999987531 100
Q ss_pred cceeecccCCCccEEEcccCcccccChh----hhhcCCCCcEEECcCCcCcccCCccccCC---CCCCEEeCCCCccCcc
Q 045323 608 LYTYEVQPLHSMSGLDLSCNKLIGEIPL----QIGELSRIHTLNLSHNNLTGESPVTFSHM---KQVESLDLSYNNLNGK 680 (740)
Q Consensus 608 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~ 680 (740)
......+++|+.|++++|+++ .++. .+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .
T Consensus 190 --~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~ 265 (310)
T 4glp_A 190 --ALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-Q 265 (310)
T ss_dssp --TSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-S
T ss_pred --HHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-c
Confidence 001134568999999999986 3333 35788999999999999998878777776 69999999999999 6
Q ss_pred CCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 681 IPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 681 ~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
+|..+. ++|+.|++++|++++. |. +..+++|+.|++++||+..
T Consensus 266 lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 266 VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 677664 7999999999999976 33 5788999999999998853
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=179.16 Aligned_cols=142 Identities=21% Similarity=0.212 Sum_probs=87.3
Q ss_pred cccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhH
Q 045323 508 DWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQ 587 (740)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 587 (740)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|.
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------------------------- 104 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD---------------------------- 104 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT----------------------------
T ss_pred hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc----------------------------
Confidence 3455566666666666666655555566666666666666666533332222
Q ss_pred HhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCC
Q 045323 588 ILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQV 667 (740)
Q Consensus 588 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 667 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|+.+++|
T Consensus 105 ---------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 105 ---------------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp ---------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ---------------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 22366666666666665555555666666666666666665555566666666
Q ss_pred CEEeCCCCccCccCCcccccCCcCceeeccCcccccC
Q 045323 668 ESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGK 704 (740)
Q Consensus 668 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 704 (740)
+.|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666666666655555666666666666666666554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=189.32 Aligned_cols=237 Identities=16% Similarity=0.238 Sum_probs=181.6
Q ss_pred eEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcc
Q 045323 410 GLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489 (740)
Q Consensus 410 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i 489 (740)
.+.+..+.+.+. .....+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|++
T Consensus 23 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCce--ecHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence 344555555432 2345688999999999999853 3 58899999999999999986554 67799999999999988
Q ss_pred cCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCC
Q 045323 490 QGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDN 569 (740)
Q Consensus 490 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~ 569 (740)
++ + ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.+.+..+
T Consensus 98 ~~--------------~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-------------- 146 (308)
T 1h6u_A 98 KN--------------V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-------------- 146 (308)
T ss_dssp SC--------------C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--------------
T ss_pred CC--------------c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--------------
Confidence 63 2 3578899999999999999854 3 38899999999999998863221
Q ss_pred CCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECc
Q 045323 570 HDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLS 649 (740)
Q Consensus 570 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~ 649 (740)
+..+++|+.|++++|++.+ ++. +..+++|++|+|+
T Consensus 147 -------------------------------------------l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 147 -------------------------------------------LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD 181 (308)
T ss_dssp -------------------------------------------GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred -------------------------------------------ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence 2344589999999999985 443 8899999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCC-----------CCcccc
Q 045323 650 HNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQF-----------GTFEED 718 (740)
Q Consensus 650 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~-----------~~l~~l 718 (740)
+|++++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++........+ ..+...
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 257 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCEECCSEEEEECCCBCTTSCBCCCS
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCeeecccEeccceeECCCCCCCCCC
Confidence 999996554 789999999999999999554 38889999999999999987533221111 113345
Q ss_pred ccccCCCCCCcCC
Q 045323 719 SYEGNPFLCGQPL 731 (740)
Q Consensus 719 ~l~~Np~~c~~~l 731 (740)
+++.|.+.|.+.+
T Consensus 258 ~is~~g~y~~~~~ 270 (308)
T 1h6u_A 258 TISDNGTYASPNL 270 (308)
T ss_dssp EEGGGCEEETTEE
T ss_pred ccccCCEEeCCce
Confidence 5666766665543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-22 Score=210.94 Aligned_cols=247 Identities=16% Similarity=0.184 Sum_probs=171.6
Q ss_pred cCCCCCCCCceEeCCCcccccCC----CcCCCCCCCCCEEeCCCCcCc---CCchhhh-------cCCCCCCEEECCCCc
Q 045323 400 KTLSNCSALQGLYISDNNISGNI----PTRLGNLSFLDAIMMPNNRLE---GPIPSAF-------CQLRHLEILDLSRNN 465 (740)
Q Consensus 400 ~~l~~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~~~---~~~~~~l-------~~l~~L~~L~l~~n~ 465 (740)
..+..+++|++|++++|.+.... +..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34455566777777777665432 233556666666666665332 2223322 455555555555555
Q ss_pred CcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCcc----ccCC----
Q 045323 466 ISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQ----LCWL---- 537 (740)
Q Consensus 466 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~----~~~l---- 537 (740)
+.... . ..++..+..+++|++|++++|.++...+.. +..+
T Consensus 106 l~~~~-----------------------~---------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~ 153 (386)
T 2ca6_A 106 FGPTA-----------------------Q---------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153 (386)
T ss_dssp CCTTT-----------------------H---------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH-----------------------H---------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhh
Confidence 44110 0 024556778899999999999997543333 3333
Q ss_pred -----CCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceee
Q 045323 538 -----NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYE 612 (740)
Q Consensus 538 -----~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 612 (740)
++|+.|++++|++..... +.+.. .
T Consensus 154 ~~~~~~~L~~L~L~~n~l~~~~~----------------------------~~l~~-----------------------~ 182 (386)
T 2ca6_A 154 KAKNAPPLRSIICGRNRLENGSM----------------------------KEWAK-----------------------T 182 (386)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGH----------------------------HHHHH-----------------------H
T ss_pred hcccCCCCcEEECCCCCCCcHHH----------------------------HHHHH-----------------------H
Confidence 899999999999862111 10000 1
Q ss_pred cccCCCccEEEcccCcccc-----cChhhhhcCCCCcEEECcCCcCc----ccCCccccCCCCCCEEeCCCCccCcc---
Q 045323 613 VQPLHSMSGLDLSCNKLIG-----EIPLQIGELSRIHTLNLSHNNLT----GESPVTFSHMKQVESLDLSYNNLNGK--- 680 (740)
Q Consensus 613 ~~~~~~L~~L~ls~n~l~~-----~~~~~l~~l~~L~~L~L~~N~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~--- 680 (740)
+..+++|+.|++++|++.. ..+..+..+++|++|+|++|.++ ..+|..+..+++|+.|+|++|++++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 2345589999999999873 34447889999999999999996 56788899999999999999999865
Q ss_pred -CCccccc--CCcCceeeccCccccc----CCCCcc-cCCCCccccccccCCCCCCc
Q 045323 681 -IPPRLIE--LNALAVFSVAFNNLSG----KTPDRV-AQFGTFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 681 -~~~~l~~--l~~L~~L~ls~N~l~~----~~~~~~-~~~~~l~~l~l~~Np~~c~~ 729 (740)
+|..+.. +++|+.|++++|++++ .+|..+ ..+++|+.|++++|++....
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5666644 8999999999999998 366655 66899999999999988655
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=192.87 Aligned_cols=80 Identities=30% Similarity=0.346 Sum_probs=47.8
Q ss_pred CccEEEcccCcccccChhhhhcC---CCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGEL---SRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l---~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+|+.||+++|++.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 45555555555554444444444 46666666666666 4455443 5677777777777643 32 4566677777
Q ss_pred eccCcccc
Q 045323 695 SVAFNNLS 702 (740)
Q Consensus 695 ~ls~N~l~ 702 (740)
++++|+++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 77777765
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=177.79 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=101.6
Q ss_pred cCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 615 PLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
.+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|+.|
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 34578888888888887777788888999999999999988888888888999999999999988888888888999999
Q ss_pred eccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
++++|++++..|..+..+++|+.+++++|||.|+|++
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9999999988888888889999999999999999875
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=195.25 Aligned_cols=163 Identities=23% Similarity=0.222 Sum_probs=135.6
Q ss_pred CCCcEEecccCcccccCCcccc-CCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhc
Q 045323 514 PQLRYLILANNGLEGEMPLQLC-WLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTN 592 (740)
Q Consensus 514 ~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 592 (740)
+.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..|..|.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--------------------------------- 85 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV--------------------------------- 85 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT---------------------------------
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc---------------------------------
Confidence 4578888888888877677676 888999999999988754443333
Q ss_pred ccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeC
Q 045323 593 YHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672 (740)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 672 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|
T Consensus 86 ----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 86 ----------------------PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp ----------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ----------------------CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 3348899999999998777778999999999999999999888999999999999999
Q ss_pred CCCccCccCCccc---ccCCcCceeeccCcccccCCCCcccCCCC--ccccccccCCCCCCcCC
Q 045323 673 SYNNLNGKIPPRL---IELNALAVFSVAFNNLSGKTPDRVAQFGT--FEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 673 s~n~l~~~~~~~l---~~l~~L~~L~ls~N~l~~~~~~~~~~~~~--l~~l~l~~Np~~c~~~l 731 (740)
++|+++...+..+ ..+++|+.|+|++|++++..+..+..++. ++.|++.+|||.|+|.+
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 9999996554455 56899999999999999888777788877 48899999999999975
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=178.72 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=41.5
Q ss_pred Ccc-EEEcccCcccccChhhhhcCCCCcEEECcCCc-CcccCCccccCC-CCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 618 SMS-GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNN-LTGESPVTFSHM-KQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 618 ~L~-~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+|+ .|++++|++....+..|.. ++|++|+|++|+ +++..+..|..+ ++|+.|++++|+++. +|.. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence 444 4555555554222222333 566666666663 665555566666 666666666666663 3322 34556666
Q ss_pred eccCc
Q 045323 695 SVAFN 699 (740)
Q Consensus 695 ~ls~N 699 (740)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 66554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=173.78 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=129.9
Q ss_pred CcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccc
Q 045323 516 LRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHN 595 (740)
Q Consensus 516 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 595 (740)
-+.++.+++.++ .+|..+ .++|+.|++++|.+.+..|..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~----------------------------------- 62 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDS----------------------------------- 62 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhC-----------------------------------
Confidence 456777777776 444433 278888888888887655554433
Q ss_pred cceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCC
Q 045323 596 HKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYN 675 (740)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n 675 (740)
+++|+.|++++|++....+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 63 --------------------l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 63 --------------------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp --------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 337888888888887666667889999999999999999888888899999999999999
Q ss_pred ccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 676 NLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 676 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.+++++|||.|+|+
T Consensus 123 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 123 KLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999 788888999999999999999999888888999999999999999999996
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-20 Score=190.57 Aligned_cols=226 Identities=22% Similarity=0.215 Sum_probs=126.3
Q ss_pred CCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCC--CCCCCcccE-EEcCCCcccCcCccccCCCcCCCCCC
Q 045323 431 FLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS--CSSPFNIRR-VHLSKNMLQGPLLGDLSYNRLNSNIP 507 (740)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~-L~l~~n~i~~~~~~~l~~~~~~~~~~ 507 (740)
++++|++++|+++.+.+.+|.++++|++|++++|++.+.++. +..++++.+ +.+++|+++ ...+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-------------~l~~ 97 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-------------YINP 97 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-------------EECT
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-------------ccCc
Confidence 444444444444433333444555555555555544332221 122333332 222223332 2334
Q ss_pred cccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCC-cCcCCCCccccccccccccCCCCccCCCchhhccchhh
Q 045323 508 DWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHN-NLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQL 586 (740)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L 586 (740)
..|..+++|++|++++|++....+..+....++..+++.++ .+....+..|..+
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~------------------------- 152 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL------------------------- 152 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS-------------------------
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc-------------------------
Confidence 55667777777777777777555555555566677777553 3332111111111
Q ss_pred HHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcC-CcCcccCCccccCCC
Q 045323 587 QILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH-NNLTGESPVTFSHMK 665 (740)
Q Consensus 587 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~l~~l~ 665 (740)
...++.|++++|+++. +|.......+|++|++++ |.++...++.|+.++
T Consensus 153 -----------------------------~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 153 -----------------------------SFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp -----------------------------BSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred -----------------------------chhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 1257778888888874 443444556788888874 667756666778888
Q ss_pred CCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCc
Q 045323 666 QVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 666 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~ 729 (740)
+|+.|||++|+|+...+..+.++++|+.+++ +.+. ..|. +..+++|+.+++. ||+.|.|
T Consensus 203 ~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP~-l~~l~~L~~l~l~-~~~~c~~ 261 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLT-YPSHCCA 261 (350)
T ss_dssp CCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCCC-TTTCCSCCEEECS-CHHHHHH
T ss_pred ccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCCC-chhCcChhhCcCC-CCccccc
Confidence 8888888888888555555555555444443 2333 3454 5677888888874 6677744
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-20 Score=191.13 Aligned_cols=247 Identities=18% Similarity=0.198 Sum_probs=172.5
Q ss_pred CCceEeCCCcccccCCCcCCCCC--CCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCccc-CCC-CCCCCcccEE
Q 045323 407 ALQGLYISDNNISGNIPTRLGNL--SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGS-LPS-CSSPFNIRRV 482 (740)
Q Consensus 407 ~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~-~~~~~~L~~L 482 (740)
.++.++++++.+. +..+..+ +.++.+++.+|.+.+..+. +..+++|++|++++|.+.+. ++. +..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677788777665 2334444 6777888888777765554 44677788888887776543 332 3346777777
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccC-ccccc-CCccccCCCCCCEEEccCC-cCcCC-CCccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN-GLEGE-MPLQLCWLNKLQLVDLSHN-NLSGQ-IPHCL 558 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~~ 558 (740)
++++|.+++ ..+..+..+++|++|++++| .+++. .+..+..+++|+.|++++| .+++. ++
T Consensus 124 ~L~~~~l~~-------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--- 187 (336)
T 2ast_B 124 SLEGLRLSD-------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--- 187 (336)
T ss_dssp ECTTCBCCH-------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH---
T ss_pred eCcCcccCH-------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH---
Confidence 777776542 33455666777888888777 56542 4445666777888888777 65421 11
Q ss_pred cccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCC-CccEEEcccC--ccc-ccCh
Q 045323 559 YNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLH-SMSGLDLSCN--KLI-GEIP 634 (740)
Q Consensus 559 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~ls~n--~l~-~~~~ 634 (740)
..+..++ +|+.|++++| .++ +.+|
T Consensus 188 ----------------------------------------------------~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 188 ----------------------------------------------------VAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp ----------------------------------------------------HHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred ----------------------------------------------------HHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 1123456 8999999999 454 4567
Q ss_pred hhhhcCCCCcEEECcCCc-CcccCCccccCCCCCCEEeCCCCc-cCccCCcccccCCcCceeeccCcccccCCCCcccCC
Q 045323 635 LQIGELSRIHTLNLSHNN-LTGESPVTFSHMKQVESLDLSYNN-LNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQF 712 (740)
Q Consensus 635 ~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~ 712 (740)
..+..+++|++|+|++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ..++.+..+
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l 291 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQLL 291 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHHH
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHHH
Confidence 778899999999999999 787888889999999999999995 33222236788999999999999 334445555
Q ss_pred -CCccccccccCCCCCCc
Q 045323 713 -GTFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 713 -~~l~~l~l~~Np~~c~~ 729 (740)
.++..|++++|.+.-..
T Consensus 292 ~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 292 KEALPHLQINCSHFTTIA 309 (336)
T ss_dssp HHHSTTSEESCCCSCCTT
T ss_pred HhhCcceEEecccCcccc
Confidence 45888999888776433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=189.83 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=42.8
Q ss_pred CCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCC
Q 045323 407 ALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSK 486 (740)
Q Consensus 407 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 486 (740)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|.+. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~l~--~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPELP--ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cchhh--cCCCEEECCC
Confidence 67777777777774 44433 256777777777766 334 345666666666666664 33311 1455555555
Q ss_pred Cccc
Q 045323 487 NMLQ 490 (740)
Q Consensus 487 n~i~ 490 (740)
|+++
T Consensus 130 N~l~ 133 (571)
T 3cvr_A 130 NQLT 133 (571)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 5443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-18 Score=161.36 Aligned_cols=151 Identities=23% Similarity=0.140 Sum_probs=99.3
Q ss_pred CCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhc
Q 045323 513 LPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTN 592 (740)
Q Consensus 513 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 592 (740)
.++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------------- 73 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--------------------------------- 73 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT---------------------------------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC---------------------------------
Confidence 35677777777777755555667777777777777776633332222
Q ss_pred ccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeC
Q 045323 593 YHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672 (740)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 672 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus 74 ----------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 74 ----------------------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp ----------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ----------------------CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 2336777777777777555555677777777777777777666666677777777777
Q ss_pred CCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCC
Q 045323 673 SYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 673 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
++|++++..+..+..+++|+.|++++|++.+.. ++++++++.+|.+
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKH 177 (208)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHHHC
T ss_pred CCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHHhC
Confidence 777777655555677777777777777665432 3445555444433
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=158.56 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=128.2
Q ss_pred CcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCc
Q 045323 477 FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPH 556 (740)
Q Consensus 477 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 556 (740)
+++++|++++|.+++ ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 28 ~~l~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS-------------LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCC-------------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEcCCCccCc-------------CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 355566665555441 2334567788899999999988866666678889999999999988744333
Q ss_pred cccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhh
Q 045323 557 CLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQ 636 (740)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 636 (740)
.+. .+++|+.|++++|++.+..+..
T Consensus 95 ~~~-------------------------------------------------------~l~~L~~L~L~~N~l~~~~~~~ 119 (208)
T 2o6s_A 95 VFD-------------------------------------------------------KLTQLKELALNTNQLQSLPDGV 119 (208)
T ss_dssp TTT-------------------------------------------------------TCTTCCEEECCSSCCCCCCTTT
T ss_pred Hhc-------------------------------------------------------CccCCCEEEcCCCcCcccCHhH
Confidence 222 3448899999999998777777
Q ss_pred hhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCC
Q 045323 637 IGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGT 714 (740)
Q Consensus 637 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~ 714 (740)
|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+ .++.|+.|+++.|+++|.+|..++.++.
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 8999999999999999998888888999999999999998874 3457999999999999999988776643
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-18 Score=157.77 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=108.6
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
++++.|++++|++. .+|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 37899999999998 77889999999999999999999988899999999999999999999888889999999999999
Q ss_pred cCcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
++|++++..+..+..+++|+.+++++|||.|+|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 999999998888999999999999999999999853
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-18 Score=157.59 Aligned_cols=114 Identities=24% Similarity=0.335 Sum_probs=107.1
Q ss_pred CccEEEcccCcccccChh-hhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIGEIPL-QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+++.|++++|++.+..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788999999999866664 4899999999999999999999999999999999999999999988888999999999999
Q ss_pred cCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
++|++++..|..++.+++|+++++++|||.|+|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999999999999999999999999999985
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=165.32 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=42.8
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+. ..+..+++|++|+|++|++++..+ +..+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus 135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (291)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECc
Confidence 555555555555432 345555555555555555554333 4555555555555555553 22 25555555556666
Q ss_pred Cccccc
Q 045323 698 FNNLSG 703 (740)
Q Consensus 698 ~N~l~~ 703 (740)
+|+++.
T Consensus 209 ~n~i~~ 214 (291)
T 1h6t_A 209 SQECLN 214 (291)
T ss_dssp EEEEEC
T ss_pred CCcccC
Confidence 555544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=178.59 Aligned_cols=134 Identities=26% Similarity=0.386 Sum_probs=94.6
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
+++.|++++|.+.+ +|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888875 55444 267888888888888 455 456888888888888886 454 544 88888888
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.
T Consensus 129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~--------------lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~ 184 (571)
T 3cvr_A 129 NNQLTM-LPE--LPALLEYINADNNQLTM--------------LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA 184 (571)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSC--------------CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred CCcCCC-CCC--cCccccEEeCCCCccCc--------------CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence 888876 444 56777777777777652 333 35677777777777764 444 44 67777
Q ss_pred EEccCCcCc
Q 045323 543 VDLSHNNLS 551 (740)
Q Consensus 543 L~l~~n~~~ 551 (740)
|++++|.++
T Consensus 185 L~Ls~N~L~ 193 (571)
T 3cvr_A 185 LDVSTNLLE 193 (571)
T ss_dssp EECCSSCCS
T ss_pred EECcCCCCC
Confidence 777777665
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=156.68 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=55.0
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 56666666666665555556666666666666666666666666666666666666666665556666666666666666
Q ss_pred CcccccC
Q 045323 698 FNNLSGK 704 (740)
Q Consensus 698 ~N~l~~~ 704 (740)
+|++.+.
T Consensus 162 ~N~l~c~ 168 (220)
T 2v70_A 162 ANPFNCN 168 (220)
T ss_dssp SCCEECS
T ss_pred CcCCcCC
Confidence 6666543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-17 Score=156.85 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=30.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
+|+.|++++|++.+..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 4445555555554444444445555555555555555444444444555555555555443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=168.82 Aligned_cols=170 Identities=21% Similarity=0.160 Sum_probs=93.3
Q ss_pred CEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcC-cccccCCCCCC
Q 045323 307 RVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL-FSKEFNLTKLK 385 (740)
Q Consensus 307 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 385 (740)
++++.+++.++ .+|..+ .+++++|++++|.++...+..|..+. +|++|++++|.+.+.+ +..|.++++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~-----~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFG-----DLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCT-----TCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCC-----CCCEEECcCCCCCCccChhHhhcchhhh
Confidence 46777777776 666544 24667777777776644444555544 5666666666664433 23455555555
Q ss_pred e-eecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCC-CcCcCCchhhhcCCC-CCCEEECC
Q 045323 386 R-LNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN-NRLEGPIPSAFCQLR-HLEILDLS 462 (740)
Q Consensus 386 ~-L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~ 462 (740)
+ +.+.+|++....+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|+++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 4 34445566655566666666666666666666644444445555555565543 344433333444432 45555666
Q ss_pred CCcCcccCCCCCCCCcccEEEcC
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLS 485 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~ 485 (740)
+|.++...+..+...+|+++++.
T Consensus 163 ~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 163 KNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp SSCCCEECTTSSTTEEEEEEECT
T ss_pred cccccCCChhhccccchhHHhhc
Confidence 66555444443344444444443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.5e-17 Score=177.65 Aligned_cols=123 Identities=19% Similarity=0.290 Sum_probs=70.3
Q ss_pred CCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCC
Q 045323 407 ALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSK 486 (740)
Q Consensus 407 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 486 (740)
.+..+.+..+.+.+.. .+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 4445556655555332 234567777788887777643 2 46777778888777777764333 44455666666666
Q ss_pred CcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCc
Q 045323 487 NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 487 n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
|.+++ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 97 N~l~~--------------l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 97 NKIKD--------------LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp SCCCC--------------CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCCC--------------Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 55542 11 344555566666665555532 23455555555555555544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=161.14 Aligned_cols=172 Identities=20% Similarity=0.362 Sum_probs=108.4
Q ss_pred CCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEE
Q 045323 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482 (740)
Q Consensus 403 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 482 (740)
..+++|+.|++++|.+... ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+ ++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~----------- 106 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS----------- 106 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-----------
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-----------
Confidence 3456677777777766633 235566666666666666664433 5566666666666665542 11
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 562 (740)
.+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..
T Consensus 107 --------------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~----- 151 (291)
T 1h6t_A 107 --------------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV----- 151 (291)
T ss_dssp --------------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG-----
T ss_pred --------------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh-----
Confidence 255566777777777776642 3466677777777777766531 11
Q ss_pred cccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCC
Q 045323 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR 642 (740)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 642 (740)
+..+++|+.|++++|++.+..+ +..+++
T Consensus 152 --------------------------------------------------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 152 --------------------------------------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp --------------------------------------------------GGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred --------------------------------------------------hccCCCCCEEEccCCccccchh--hcCCCc
Confidence 1233467777777777764433 777788
Q ss_pred CcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc
Q 045323 643 IHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 643 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
|++|+|++|.+++. + .+..+++|+.|++++|+++.
T Consensus 180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 88888888877743 3 36777788888888887764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=152.48 Aligned_cols=85 Identities=22% Similarity=0.210 Sum_probs=44.4
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 4555555555555444444455555555555555555 444445555555555555555554444445555555555555
Q ss_pred Cccccc
Q 045323 698 FNNLSG 703 (740)
Q Consensus 698 ~N~l~~ 703 (740)
+|++.+
T Consensus 168 ~N~~~c 173 (229)
T 3e6j_A 168 GNPWDC 173 (229)
T ss_dssp TSCBCT
T ss_pred CCCccC
Confidence 555543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=165.82 Aligned_cols=136 Identities=24% Similarity=0.218 Sum_probs=83.9
Q ss_pred CCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhh
Q 045323 512 RLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYT 591 (740)
Q Consensus 512 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 591 (740)
.+++|++|++++|++.+..+..|..+++|+.|++++|++.+..+..|.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------------- 109 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS-------------------------------- 109 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--------------------------------
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC--------------------------------
Confidence 566666666666666655555666666666777666666533322222
Q ss_pred cccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccc---cCCCCCC
Q 045323 592 NYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTF---SHMKQVE 668 (740)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~ 668 (740)
.+++|+.|++++|++.+..|..|..+++|++|+|++|++++..+..| ..+++|+
T Consensus 110 -----------------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 110 -----------------------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp -----------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred -----------------------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 23366667777777666666667777777777777777775444444 4566777
Q ss_pred EEeCCCCccCccCCcccccCCc--CceeeccCcccc
Q 045323 669 SLDLSYNNLNGKIPPRLIELNA--LAVFSVAFNNLS 702 (740)
Q Consensus 669 ~L~Ls~n~l~~~~~~~l~~l~~--L~~L~ls~N~l~ 702 (740)
.|+|++|+|+...+..+..++. |+.|++++|++.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 7777777776554455666665 366777777664
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=173.86 Aligned_cols=178 Identities=23% Similarity=0.336 Sum_probs=126.8
Q ss_pred CCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEE
Q 045323 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482 (740)
Q Consensus 403 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 482 (740)
..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.+ ++.+..+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEE
Confidence 3455666666666666532 2 45666777777777777665444 6677777777777777763 4555667788888
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 562 (740)
++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +
T Consensus 115 ~Ls~N~l~~--------------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l---- 171 (605)
T 1m9s_A 115 SLEHNGISD--------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L---- 171 (605)
T ss_dssp ECTTSCCCC--------------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G----
T ss_pred EecCCCCCC--------------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h----
Confidence 888777652 2 3477899999999999999864 568889999999999998874433 2
Q ss_pred cccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCC
Q 045323 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR 642 (740)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 642 (740)
..+++|+.|+|++|++.+ ++ .+..+++
T Consensus 172 ---------------------------------------------------~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~ 198 (605)
T 1m9s_A 172 ---------------------------------------------------AGLTKLQNLYLSKNHISD-LR-ALAGLKN 198 (605)
T ss_dssp ---------------------------------------------------TTCTTCCEEECCSSCCCB-CG-GGTTCTT
T ss_pred ---------------------------------------------------ccCCCCCEEECcCCCCCC-Ch-HHccCCC
Confidence 234588888888888874 33 5788888
Q ss_pred CcEEECcCCcCcccCCccc
Q 045323 643 IHTLNLSHNNLTGESPVTF 661 (740)
Q Consensus 643 L~~L~L~~N~l~~~~~~~l 661 (740)
|+.|+|++|++++.....+
T Consensus 199 L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 199 LDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp CSEEECCSEEEECCCCCCC
T ss_pred CCEEEccCCcCcCCccccc
Confidence 8888888888875544333
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=149.09 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=41.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCc-CcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNN-LTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+|+.|++++|++.+..|..+..+++|++|+|++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence 45555555555554455555555555555555555 43 222 34555555555555555553 22 4455555555555
Q ss_pred cCcccc
Q 045323 697 AFNNLS 702 (740)
Q Consensus 697 s~N~l~ 702 (740)
++|++.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 555543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=150.12 Aligned_cols=152 Identities=16% Similarity=0.301 Sum_probs=129.2
Q ss_pred CCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhh
Q 045323 511 NRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILY 590 (740)
Q Consensus 511 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~ 590 (740)
..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.. +..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~--------------------------------- 83 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNP--------------------------------- 83 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGG---------------------------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chh---------------------------------
Confidence 45788999999999998 445 58889999999999996641 111
Q ss_pred hcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEE
Q 045323 591 TNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESL 670 (740)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 670 (740)
+..+++|+.|++++|++.+..+..+..+++|++|+|++|++++..|..++.+++|++|
T Consensus 84 ----------------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 84 ----------------------ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp ----------------------GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred ----------------------hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 2345689999999999998788889999999999999999998889999999999999
Q ss_pred eCCCCc-cCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCC
Q 045323 671 DLSYNN-LNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 671 ~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
++++|+ ++ .+| .+..+++|+.|++++|++++.. .+..+++|+.|++++|+.
T Consensus 142 ~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 142 DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 999998 66 555 6899999999999999998754 578999999999999986
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-16 Score=156.64 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=88.8
Q ss_pred hcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCccccc
Q 045323 450 FCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGE 529 (740)
Q Consensus 450 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 529 (740)
+..+++|++|++++|.+. .++.+..+++|+.|++++|+++ .++. +..+++|+.|++++|++++.
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~--------------~~~~-l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQIS--------------DLSP-LKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCC--------------CCGG-GTTCSSCCEEECCSSCCSCC
T ss_pred hhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccC--------------CChh-hccCCCCCEEECCCCccCCc
Confidence 344455555555555544 2222223444444444444433 2222 66677788888888877743
Q ss_pred CCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccc
Q 045323 530 MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLY 609 (740)
Q Consensus 530 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 609 (740)
+. +.. ++|+.|++++|.+.+. + .
T Consensus 101 -~~-~~~-~~L~~L~L~~N~l~~~-~-~---------------------------------------------------- 123 (263)
T 1xeu_A 101 -NG-IPS-ACLSRLFLDNNELRDT-D-S---------------------------------------------------- 123 (263)
T ss_dssp -TT-CCC-SSCCEEECCSSCCSBS-G-G----------------------------------------------------
T ss_pred -Cc-ccc-CcccEEEccCCccCCC-h-h----------------------------------------------------
Confidence 22 222 7777777777776531 1 0
Q ss_pred eeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCcc
Q 045323 610 TYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGK 680 (740)
Q Consensus 610 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 680 (740)
+..+++|+.|++++|++++. + .+..+++|++|+|++|++++. ..+..+++|+.|++++|++++.
T Consensus 124 ---l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 ---LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ---hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 12344777777777777643 3 567777777777777777755 5566777777777777777644
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-16 Score=143.21 Aligned_cols=114 Identities=21% Similarity=0.270 Sum_probs=106.1
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 48999999999999777777899999999999999999888888899999999999999999877778899999999999
Q ss_pred cCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
++|++++.++..+..+++|+++++++||+.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999988888899999999999999999997
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=142.61 Aligned_cols=162 Identities=22% Similarity=0.247 Sum_probs=110.7
Q ss_pred CCcEEecccCcccccCCc-cccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcc
Q 045323 515 QLRYLILANNGLEGEMPL-QLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNY 593 (740)
Q Consensus 515 ~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~ 593 (740)
++++|++++|.+.+..+. .+..+++|+.|++++|.+++..|..|..
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------- 76 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG--------------------------------- 76 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT---------------------------------
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC---------------------------------
Confidence 777888888887755543 4777888888888888877655554433
Q ss_pred cccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCC
Q 045323 594 HNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLS 673 (740)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 673 (740)
+++|+.|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus 77 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 77 ----------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp ----------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred ----------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 2378888888888887777778888888888888888888888888888888899999
Q ss_pred CCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCCCCCC
Q 045323 674 YNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSC 735 (740)
Q Consensus 674 ~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~~~~ 735 (740)
+|++.+..+... -...++...+..+......|. .+......++..+.+.|..+-...|
T Consensus 135 ~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~---~l~~~~l~~l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 135 SNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp TCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTCCCCCC---CC
T ss_pred CCCccCcCcchH-HHHHHHHcCCCCCCCCCCCCh---HHcCCChhhCcHhhcCcCCCCCCCC
Confidence 988885443211 111233334455555444454 3344566677888888876544433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-18 Score=190.15 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=72.5
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccC-CcccccCCcCceee
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI-PPRLIELNALAVFS 695 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ 695 (740)
++|+.|++++|++. .+|..|..+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..+..+++|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 36777777777776 667777778888888888888775 45 6777788888888888887665 77777788888888
Q ss_pred ccCcccccCCCCc---ccCCCCccccc
Q 045323 696 VAFNNLSGKTPDR---VAQFGTFEEDS 719 (740)
Q Consensus 696 ls~N~l~~~~~~~---~~~~~~l~~l~ 719 (740)
+++|++++.+|.. +..+++|+.|+
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccC
Confidence 8888887776643 22356666664
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-16 Score=153.44 Aligned_cols=174 Identities=18% Similarity=0.234 Sum_probs=140.3
Q ss_pred CCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC
Q 045323 452 QLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP 531 (740)
Q Consensus 452 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 531 (740)
.+.+++.++++++.+.+.. ....+++|+.|++++|.++ .++ .+..+++|++|++++|.+++..+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~--------------~l~-~l~~l~~L~~L~L~~N~i~~~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ--------------SLA-GMQFFTNLKELHLSHNQISDLSP 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC--------------CCT-TGGGCTTCCEEECCSSCCCCCGG
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc--------------cch-HHhhCCCCCEEECCCCccCCChh
Confidence 3556778889998887443 4555889999999999876 334 57788999999999999985544
Q ss_pred ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeecccccee
Q 045323 532 LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTY 611 (740)
Q Consensus 532 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 611 (740)
+..+++|+.|++++|++.+ +|..
T Consensus 81 --l~~l~~L~~L~L~~N~l~~-l~~~------------------------------------------------------ 103 (263)
T 1xeu_A 81 --LKDLTKLEELSVNRNRLKN-LNGI------------------------------------------------------ 103 (263)
T ss_dssp --GTTCSSCCEEECCSSCCSC-CTTC------------------------------------------------------
T ss_pred --hccCCCCCEEECCCCccCC-cCcc------------------------------------------------------
Confidence 8889999999999998863 2210
Q ss_pred ecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcC
Q 045323 612 EVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691 (740)
Q Consensus 612 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 691 (740)
.. ++|+.|++++|++.+ ++ .+..+++|++|+|++|++++. + .++.+++|+.|++++|++++. +.+..+++|
T Consensus 104 --~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 104 --PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp --CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred --cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 01 489999999999985 44 588999999999999999965 3 688999999999999999965 678889999
Q ss_pred ceeeccCcccccCCCC
Q 045323 692 AVFSVAFNNLSGKTPD 707 (740)
Q Consensus 692 ~~L~ls~N~l~~~~~~ 707 (740)
+.|++++|++++....
T Consensus 175 ~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 175 NWIDLTGQKCVNEPVK 190 (263)
T ss_dssp CEEEEEEEEEECCCEE
T ss_pred CEEeCCCCcccCCccc
Confidence 9999999999877443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-18 Score=189.32 Aligned_cols=203 Identities=20% Similarity=0.184 Sum_probs=125.1
Q ss_pred CCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCc-------------CcCCchhhhcCCCCCCEEE-CCCCcCccc
Q 045323 404 NCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNR-------------LEGPIPSAFCQLRHLEILD-LSRNNISGS 469 (740)
Q Consensus 404 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~~~~~ 469 (740)
.++.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+.++++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3456666666666665 456666666666666665443 2333444445555555555 4443322
Q ss_pred CCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCc
Q 045323 470 LPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549 (740)
Q Consensus 470 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 549 (740)
.|..+.+++|.++. ++ ...|+.|++++|.+++ +|. +..+++|+.|++++|.
T Consensus 424 --------~L~~l~l~~n~i~~--------------l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 424 --------DLRSKFLLENSVLK--------------ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp --------HHHHHHHHHHHHHH--------------HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred --------hhhhhhhhcccccc--------------cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 33333344443321 11 1247778888887774 454 7777788888888887
Q ss_pred CcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcc
Q 045323 550 LSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL 629 (740)
Q Consensus 550 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 629 (740)
++ .+|..+.. +++|+.|++++|++
T Consensus 475 l~-~lp~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 475 LR-ALPPALAA-------------------------------------------------------LRCLEVLQASDNAL 498 (567)
T ss_dssp CC-CCCGGGGG-------------------------------------------------------CTTCCEEECCSSCC
T ss_pred cc-ccchhhhc-------------------------------------------------------CCCCCEEECCCCCC
Confidence 76 55544333 33777788888887
Q ss_pred cccChhhhhcCCCCcEEECcCCcCcccC-CccccCCCCCCEEeCCCCccCccCCc---ccccCCcCceeec
Q 045323 630 IGEIPLQIGELSRIHTLNLSHNNLTGES-PVTFSHMKQVESLDLSYNNLNGKIPP---RLIELNALAVFSV 696 (740)
Q Consensus 630 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~l 696 (740)
++ +| .+..+++|++|+|++|++++.. |..|+.+++|+.|+|++|++++.+|. .+..+++|+.|++
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 74 56 6777888888888888887665 77777888888888888888755442 2233677777754
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=140.11 Aligned_cols=110 Identities=24% Similarity=0.278 Sum_probs=101.9
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
..+.+++++|+++ .+|..+ .++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999998 577665 3899999999999999989999999999999999999998777788999999999999
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+|++++..+..++.+++|++|++++|||.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999999889999999999999999999996
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-16 Score=157.54 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=92.9
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCC-EEeCCCCccCccCCcccccCCcCcee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVE-SLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+++|+.+++++|+++.+.+..|.++++|++|+|.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 578999999999998777888999999999999998 8878899999999999 999999 7887778899999999999
Q ss_pred eccCcccccCCCCcccCCCCccccc
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFEEDS 719 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~~l~ 719 (740)
++++|.++.+.+..|..+++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 9999999999999999999998775
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-15 Score=135.08 Aligned_cols=136 Identities=21% Similarity=0.211 Sum_probs=106.6
Q ss_pred CCCCcEEecccCccc-ccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhh
Q 045323 513 LPQLRYLILANNGLE-GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYT 591 (740)
Q Consensus 513 ~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 591 (740)
.++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~---------------------------------- 66 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN---------------------------------- 66 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SS----------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hh----------------------------------
Confidence 477888888888887 56677778888888888888887632 11
Q ss_pred cccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccC-CccccCCCCCCEE
Q 045323 592 NYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGES-PVTFSHMKQVESL 670 (740)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L 670 (740)
+..+++|+.|++++|++.+.+|..+..+++|++|+|++|++++.. +..+..+++|+.|
T Consensus 67 ---------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 67 ---------------------LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp ---------------------CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred ---------------------hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 234458888999999888768887888899999999999988643 2678888999999
Q ss_pred eCCCCccCccCC---cccccCCcCceeeccCcccccCC
Q 045323 671 DLSYNNLNGKIP---PRLIELNALAVFSVAFNNLSGKT 705 (740)
Q Consensus 671 ~Ls~n~l~~~~~---~~l~~l~~L~~L~ls~N~l~~~~ 705 (740)
++++|++++..+ ..+..+++|+.|++++|.+....
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999985554 47888889999999999887553
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=144.54 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=49.0
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.++.+.+.. .++......|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.+|++|+.+++.
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 455555543 2333333444442 4666665544 444444455553 456665554 3443444555555566666665
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCC
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSR 463 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~ 463 (740)
.|.++.+...+|. +.+|+.+.+..
T Consensus 189 ~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 189 KTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp TSCCSEECTTTTT-TCCCSEEECCT
T ss_pred CCcceEechhhEe-ecccCEEEeCC
Confidence 5555544444443 35555555553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-15 Score=152.80 Aligned_cols=76 Identities=12% Similarity=-0.007 Sum_probs=45.4
Q ss_pred CccEEEcccCcccccChhhhhcCCCCc-EEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIH-TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
+|+.+++.+| +..+.+.+|.++++|+ .++|.+ .++.+.+.+|.++++|+++++++|.++.+.+..|.++++|+.++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5555555554 4444555566666666 666665 55555566666666666666666666655555666666666554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-15 Score=136.40 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=100.3
Q ss_pred ccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccC
Q 045323 619 MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAF 698 (740)
Q Consensus 619 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 698 (740)
-+.++++++++. .+|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 7777664 8999999999999999899999999999999999999977667789999999999999
Q ss_pred cccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 699 NNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 699 N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
|++++.++..++.+++|+.|++++|||.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99999988889999999999999999999996
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-15 Score=172.71 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=33.4
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCC-CCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQ-VESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+|+.|+|++|.+. .+|..|..+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.. |+.|++
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEe
Confidence 4555555555554 44544555555555555555555555544433211 122455555555444432 344445
Q ss_pred cCc--------ccccCCCCcccCCCCccccccccCCC
Q 045323 697 AFN--------NLSGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 697 s~N--------~l~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
++| .+.+..+..+..+..+....++.|-+
T Consensus 367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp -----------------------------------CC
T ss_pred ecccccccccCCccccccchhhcccccceeeeecccc
Confidence 544 23333333333334444455566643
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=130.32 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=97.7
Q ss_pred CCCCcEEecccCccc-ccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhh
Q 045323 513 LPQLRYLILANNGLE-GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYT 591 (740)
Q Consensus 513 ~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 591 (740)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~---------------------------------- 59 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--AN---------------------------------- 59 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TT----------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hh----------------------------------
Confidence 367888888888887 56677778888888888888887632 11
Q ss_pred cccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCccc-CCccccCCCCCCEE
Q 045323 592 NYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE-SPVTFSHMKQVESL 670 (740)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L 670 (740)
+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++. .+..++.+++|+.|
T Consensus 60 ---------------------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 60 ---------------------LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp ---------------------CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred ---------------------hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 22345788888888888866787777788888888888888864 34677888888888
Q ss_pred eCCCCccCccCC---cccccCCcCceeeccC
Q 045323 671 DLSYNNLNGKIP---PRLIELNALAVFSVAF 698 (740)
Q Consensus 671 ~Ls~n~l~~~~~---~~l~~l~~L~~L~ls~ 698 (740)
++++|++++..+ ..+..+++|+.|++++
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888886555 4677788888888763
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-15 Score=135.24 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=96.6
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccC-CcccccCCcCceee
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI-PPRLIELNALAVFS 695 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ 695 (740)
++|+.|++++|.+.+. ..+..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.. +..+..+++|+.|+
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 4899999999999855 67899999999999999999878888888999999999999999542 27889999999999
Q ss_pred ccCcccccCCC---CcccCCCCccccccccCCCC
Q 045323 696 VAFNNLSGKTP---DRVAQFGTFEEDSYEGNPFL 726 (740)
Q Consensus 696 ls~N~l~~~~~---~~~~~~~~l~~l~l~~Np~~ 726 (740)
+++|++++..+ ..+..+++|++|++++|+..
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999998877 57889999999999998763
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-15 Score=173.18 Aligned_cols=182 Identities=20% Similarity=0.162 Sum_probs=104.6
Q ss_pred CchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccC
Q 045323 445 PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN 524 (740)
Q Consensus 445 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n 524 (740)
..+..+..++.|+.|+|++|.+.......+.+++|+.|++++|.|+ .+|..+..+++|+.|+|++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--------------ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--------------CCCGGGGGGTTCCEEECTTS
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--------------ccChhhhCCCCCCEEeCcCC
Confidence 3445555666666666666666533333444566666666666554 56777888999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeee
Q 045323 525 GLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTT 604 (740)
Q Consensus 525 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 604 (740)
.++ .+|..+..+++|+.|+|++|.+. .+|..|..
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~-------------------------------------------- 314 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN-------------------------------------------- 314 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS--------------------------------------------
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhc--------------------------------------------
Confidence 999 67888999999999999999886 55654443
Q ss_pred ccccceeecccCCCccEEEcccCcccccChhhhhcCCC-CcEEECcCCcCcccCCccccCCCCCCEEeCCCC--------
Q 045323 605 KQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR-IHTLNLSHNNLTGESPVTFSHMKQVESLDLSYN-------- 675 (740)
Q Consensus 605 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n-------- 675 (740)
+++|+.|+|++|.+.+.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++|
T Consensus 315 -----------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~ 377 (727)
T 4b8c_D 315 -----------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYD 377 (727)
T ss_dssp -----------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------
T ss_pred -----------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccC
Confidence 348999999999999888888766522 234789999998777754 456677777
Q ss_pred ccCccCCcccccCCcCceeeccCccccc
Q 045323 676 NLNGKIPPRLIELNALAVFSVAFNNLSG 703 (740)
Q Consensus 676 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 703 (740)
.+.+..+..+..+..+....+++|-+.+
T Consensus 378 ~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 378 SLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ------------------------CCCG
T ss_pred Cccccccchhhcccccceeeeecccccc
Confidence 3444455556667777888888998753
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=131.71 Aligned_cols=86 Identities=26% Similarity=0.293 Sum_probs=54.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 56666666666665555556666666666666666666666666666666666666666665444456666666666666
Q ss_pred Cccccc
Q 045323 698 FNNLSG 703 (740)
Q Consensus 698 ~N~l~~ 703 (740)
+|++..
T Consensus 135 ~N~~~C 140 (193)
T 2wfh_A 135 ANPLYC 140 (193)
T ss_dssp SSCEEC
T ss_pred CCCeec
Confidence 666643
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-13 Score=141.12 Aligned_cols=239 Identities=11% Similarity=0.035 Sum_probs=142.2
Q ss_pred CcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCc
Q 045323 399 PKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFN 478 (740)
Q Consensus 399 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 478 (740)
..+|.++++|+.+.+.++... ....+|.++.+|+.+.+..+ ++.+...+|.+++.|+.+.+..+... .......+..
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence 345666666666666544322 44456666666666666554 33344456666666666666554332 2222333445
Q ss_pred ccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccc
Q 045323 479 IRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCL 558 (740)
Q Consensus 479 L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 558 (740)
|+.+.+....- ......+..+..++.+.+..+... .....|..+..++.+......+.
T Consensus 232 l~~i~ip~~~~--------------~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~------- 289 (394)
T 4fs7_A 232 VKNIIIPDSFT--------------ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP------- 289 (394)
T ss_dssp CCEEEECTTCC--------------EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-------
T ss_pred CceEEECCCce--------------ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-------
Confidence 55555533211 012344556677777777655433 44455666666666655543221
Q ss_pred cccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhh
Q 045323 559 YNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIG 638 (740)
Q Consensus 559 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 638 (740)
...+..+.+|+.+.+..+ +..+...+|.
T Consensus 290 ---------------------------------------------------~~~F~~~~~L~~i~l~~~-i~~I~~~aF~ 317 (394)
T 4fs7_A 290 ---------------------------------------------------EKTFYGCSSLTEVKLLDS-VKFIGEEAFE 317 (394)
T ss_dssp ---------------------------------------------------TTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred ---------------------------------------------------cccccccccccccccccc-cceechhhhc
Confidence 112234457777777654 5545667788
Q ss_pred cCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCcccc
Q 045323 639 ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEED 718 (740)
Q Consensus 639 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l 718 (740)
++++|+.++|..+ ++.+...+|.++++|+++++..+ ++.+...+|..+++|+.+++..+ +.. +...|...++|+.+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence 8888888888744 77677888888888888888776 66566778888888888888765 221 23446666665543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-15 Score=132.44 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=93.3
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCcc-CCcccccCCcCcee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGK-IPPRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L 694 (740)
+++|+.|++++|.+.+. ..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++. .+..+..+++|+.|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 44899999999999865 6789999999999999999987888888899999999999999964 34789999999999
Q ss_pred eccCcccccCCC---CcccCCCCcccccccc
Q 045323 695 SVAFNNLSGKTP---DRVAQFGTFEEDSYEG 722 (740)
Q Consensus 695 ~ls~N~l~~~~~---~~~~~~~~l~~l~l~~ 722 (740)
++++|++++..+ ..+..+++|+.|++++
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999998877 5688899999999864
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-13 Score=139.60 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=70.2
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCC
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 407 (740)
+..++.+.+.+. ++.....+|.. | +|+.+.+..+ +.......|.+ .+|+.+.+.. .+..+...+|.+|++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~-----~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRN-----S-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTT-----C-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTT
T ss_pred cCCccEEEECCc-cCEehHhhccc-----C-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCccc
Confidence 345566655543 22233334433 1 4666666554 44444445555 3566776664 445455566666777
Q ss_pred CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCC
Q 045323 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSR 463 (740)
Q Consensus 408 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 463 (740)
|+.+++.+|.++.....+|. +.+|+.+.+..+ ++.+...+|.+|++|+.+++..
T Consensus 182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 77777776666654445555 466777776633 4445555666666666666654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.4e-14 Score=128.59 Aligned_cols=89 Identities=21% Similarity=0.236 Sum_probs=58.6
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 56666666666665555556667777777777777776666666667777777777777765555555666777777777
Q ss_pred CcccccCCC
Q 045323 698 FNNLSGKTP 706 (740)
Q Consensus 698 ~N~l~~~~~ 706 (740)
+|++.+..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 777665544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=136.33 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=140.6
Q ss_pred ccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCC
Q 045323 376 SKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH 455 (740)
Q Consensus 376 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 455 (740)
..|.++.+|+.+.+.++. ......+|.++.+|+.+.+..+ +......+|.++..|+.+.+..+... +...+.....
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 345556666666665432 2244455666666666666554 33344455666666666665544332 2222334456
Q ss_pred CCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCcccc
Q 045323 456 LEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLC 535 (740)
Q Consensus 456 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 535 (740)
|+.+.+......-....+..+..++.+.+..+... .....|..+..++.+......+ ....+.
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~--------------i~~~~F~~~~~l~~~~~~~~~i---~~~~F~ 294 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR--------------IGGSLFYNCSGLKKVIYGSVIV---PEKTFY 294 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE--------------ECSCTTTTCTTCCEEEECSSEE---CTTTTT
T ss_pred CceEEECCCceecccccccccccceeEEcCCCcce--------------eeccccccccccceeccCceee---cccccc
Confidence 66666654322211223334666666666554321 2234566677777777665433 234567
Q ss_pred CCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeeccc
Q 045323 536 WLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP 615 (740)
Q Consensus 536 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (740)
.+.+|+.+.+.++ +...... .+..
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~-------------------------------------------------------aF~~ 318 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEE-------------------------------------------------------AFES 318 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTT-------------------------------------------------------TTTT
T ss_pred ccccccccccccc-cceechh-------------------------------------------------------hhcC
Confidence 7788888877654 2211111 2234
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+.+|+.+++..+ ++.+...+|.++++|+.+++..+ ++.....+|.++++|+++++..+ +. .+...|.++++|+.+
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 447777777643 55566778889999999999877 77778889999999999999765 33 334567788887764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-14 Score=128.25 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=97.9
Q ss_pred ccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHH
Q 045323 509 WMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588 (740)
Q Consensus 509 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 588 (740)
.+..+++|+.|++++|.++. ++......++|+.|++++|.+.+. .
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~-------------------------------- 58 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--D-------------------------------- 58 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--C--------------------------------
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--c--------------------------------
Confidence 35567888889999888884 344333334888888888887632 1
Q ss_pred hhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCc--cccCCCC
Q 045323 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPV--TFSHMKQ 666 (740)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~--~l~~l~~ 666 (740)
.+..+++|+.|++++|++.+..+..+..+++|++|+|++|+++. +|. .+..+++
T Consensus 59 -----------------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~ 114 (176)
T 1a9n_A 59 -----------------------GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKS 114 (176)
T ss_dssp -----------------------CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTT
T ss_pred -----------------------ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCC
Confidence 12344578888888888886555556888888888888888873 444 6778888
Q ss_pred CCEEeCCCCccCccCCcc----cccCCcCceeeccCccccc
Q 045323 667 VESLDLSYNNLNGKIPPR----LIELNALAVFSVAFNNLSG 703 (740)
Q Consensus 667 L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~ls~N~l~~ 703 (740)
|+.|++++|+++ .+|.. +..+++|+.||+++|....
T Consensus 115 L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 115 LTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888887 44553 7778888888888887653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-13 Score=125.61 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=72.8
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCc--ccccCCcCceee
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPP--RLIELNALAVFS 695 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~ 695 (740)
+|+.|++++|++.+. ..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++ .+|+ .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 677777777777654 45677777777777777777555555577777777777777776 3444 666777777777
Q ss_pred ccCcccccCCCC---cccCCCCccccccccCCC
Q 045323 696 VAFNNLSGKTPD---RVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 696 ls~N~l~~~~~~---~~~~~~~l~~l~l~~Np~ 725 (740)
+++|+++...+. .+..+++|+.+++++|+.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 777777654332 356777777777777653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=142.20 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=101.2
Q ss_pred cEEEcccC-cccccChhhhhcCCCCcEEECcC-CcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 620 SGLDLSCN-KLIGEIPLQIGELSRIHTLNLSH-NNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 620 ~~L~ls~n-~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
..++++++ +++ .+|. |..+++|++|+|++ |.+++..+..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45799998 887 6888 99999999999996 99998888999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
+|+|++.++..+..++ |+.|++.+|++.|+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence 9999999888887776 999999999999999853
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-15 Score=141.94 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=45.5
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCC-cccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIP-PRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l 696 (740)
+|+.|++++|++. .+|..+..+++|++|+|++|++++ +| .+..+++|+.|++++|+++...+ +.+..+++|+.|++
T Consensus 71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 5555555555554 444444555555555555555553 22 34555555555555555553221 34555555555555
Q ss_pred cCcccccCCCC
Q 045323 697 AFNNLSGKTPD 707 (740)
Q Consensus 697 s~N~l~~~~~~ 707 (740)
++|++.+..|.
T Consensus 148 ~~N~l~~~~~~ 158 (198)
T 1ds9_A 148 AGNPLYNDYKE 158 (198)
T ss_dssp CSCHHHHHHHT
T ss_pred cCCcccccccc
Confidence 55555554443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=117.35 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=83.2
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+.|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 37899999999999888999999999999999999999888888999999999999999999777778999999999999
Q ss_pred cCcccccCCC
Q 045323 697 AFNNLSGKTP 706 (740)
Q Consensus 697 s~N~l~~~~~ 706 (740)
++|++....+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999987654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-14 Score=133.49 Aligned_cols=136 Identities=19% Similarity=0.251 Sum_probs=108.8
Q ss_pred CCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchh
Q 045323 506 IPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQ 585 (740)
Q Consensus 506 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 585 (740)
+|..+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-------------------------- 90 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-------------------------- 90 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH--------------------------
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh--------------------------
Confidence 44577888999999999999985 55 7888999999999999886 3443221
Q ss_pred hHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCC-ccccCC
Q 045323 586 LQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESP-VTFSHM 664 (740)
Q Consensus 586 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l 664 (740)
.+++|+.|++++|++.+ +| .+..+++|++|+|++|++++..+ ..+..+
T Consensus 91 -----------------------------~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l 139 (198)
T 1ds9_A 91 -----------------------------VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139 (198)
T ss_dssp -----------------------------HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTT
T ss_pred -----------------------------cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcC
Confidence 12378999999999985 45 68899999999999999996443 578899
Q ss_pred CCCCEEeCCCCccCccCCcc----------cccCCcCceeeccCccccc
Q 045323 665 KQVESLDLSYNNLNGKIPPR----------LIELNALAVFSVAFNNLSG 703 (740)
Q Consensus 665 ~~L~~L~Ls~n~l~~~~~~~----------l~~l~~L~~L~ls~N~l~~ 703 (740)
++|+.|++++|++.+.+|.. +..+++|+.|| +|+++.
T Consensus 140 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999999999998765543 77889999887 777754
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=114.99 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=82.0
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+.|+.|++++|++.+..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 37899999999999888999999999999999999999887778899999999999999999766667999999999999
Q ss_pred cCcccccCCC
Q 045323 697 AFNNLSGKTP 706 (740)
Q Consensus 697 s~N~l~~~~~ 706 (740)
++|++....+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999986644
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-10 Score=119.17 Aligned_cols=101 Identities=7% Similarity=0.081 Sum_probs=52.4
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
++.|+.+++. +.+..+....|.++.+|++++|..+ ++.+...+|.++++|+++.|..+ ++.+...+|.++++|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 3455555554 2343344555666666666666543 55455666666666666666543 4434455666666666666
Q ss_pred ccCcccccCCCCcccCCCCcccccccc
Q 045323 696 VAFNNLSGKTPDRVAQFGTFEEDSYEG 722 (740)
Q Consensus 696 ls~N~l~~~~~~~~~~~~~l~~l~l~~ 722 (740)
+.++.... ..+....+|+.+.+..
T Consensus 364 ~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 364 YSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp ESSCHHHH---HTCBCCCCC-------
T ss_pred ECCceeeh---hhhhccCCCCEEEeCC
Confidence 66664321 2234445555555544
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-10 Score=117.07 Aligned_cols=110 Identities=7% Similarity=0.118 Sum_probs=92.3
Q ss_pred eecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCc
Q 045323 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNA 690 (740)
Q Consensus 611 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 690 (740)
..+..+..|+.+.+..+... +....|.+++.|+.+.+. +.++.....+|.++++|++++|..+ ++.+...+|..+++
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35567788999999766543 667789999999999996 5677788899999999999999865 66566789999999
Q ss_pred CceeeccCcccccCCCCcccCCCCccccccccCC
Q 045323 691 LAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNP 724 (740)
Q Consensus 691 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np 724 (740)
|+.+.+..+ ++.+....|..+.+|+.+++.+|.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 999999765 777778889999999999998875
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-12 Score=136.43 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=30.6
Q ss_pred CccEEEcccCcccccC----hhhhhcCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCccCc
Q 045323 618 SMSGLDLSCNKLIGEI----PLQIGELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
+|+.||+++|.+.+.. +..+...++|++|+|++|.+++. ++..+...++|++|+|++|.|+.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 4555555555543221 33344455555555555555532 22333344556666666665553
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-12 Score=134.69 Aligned_cols=175 Identities=18% Similarity=0.204 Sum_probs=122.1
Q ss_pred CCcccEEEcCCCcccCcCccccCCCcCCCCCCcccC-CCCCCcEEecccCcccccCCccc-cCCCCCCEEEccCCcCcCC
Q 045323 476 PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMN-RLPQLRYLILANNGLEGEMPLQL-CWLNKLQLVDLSHNNLSGQ 553 (740)
Q Consensus 476 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~ 553 (740)
.+.|+.|++++|.++..... .+...+. ..++|++|++++|.++......+ ..+++|+.|++++|.+++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~---------~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT---------VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH---------HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred HhhCCEEEecCCCCCHHHHH---------HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 57889999999887633211 1122233 23689999999999875433332 3456899999999987632
Q ss_pred CCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccccc-
Q 045323 554 IPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE- 632 (740)
Q Consensus 554 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~- 632 (740)
....+...- ....+.|+.|++++|.++..
T Consensus 142 ~~~~L~~~L--------------------------------------------------~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 142 ACKDLRDLL--------------------------------------------------LHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp HHHHHHHHH--------------------------------------------------HSTTCCCCEEECCSSCCHHHH
T ss_pred HHHHHHHHH--------------------------------------------------HhcCCccceeeCCCCCCChHH
Confidence 222111100 02345899999999998753
Q ss_pred ---ChhhhhcCCCCcEEECcCCcCcccC----CccccCCCCCCEEeCCCCccCcc----CCcccccCCcCceeeccCccc
Q 045323 633 ---IPLQIGELSRIHTLNLSHNNLTGES----PVTFSHMKQVESLDLSYNNLNGK----IPPRLIELNALAVFSVAFNNL 701 (740)
Q Consensus 633 ---~~~~l~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~N~l 701 (740)
++..+..+++|++|+|++|.+++.. +..+...++|++|+|++|.|+.. ++..+...++|+.|+|++|++
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3445577899999999999998643 56677888999999999999853 445566679999999999999
Q ss_pred ccCCCCcc
Q 045323 702 SGKTPDRV 709 (740)
Q Consensus 702 ~~~~~~~~ 709 (740)
+......+
T Consensus 252 ~~~g~~~L 259 (372)
T 3un9_A 252 SSEGRQVL 259 (372)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 76544433
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=9e-11 Score=121.53 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=89.4
Q ss_pred CCCccEEEccc-CcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 616 LHSMSGLDLSC-NKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~-n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34899999996 999988888999999999999999999999999999999999999999999976666666666 9999
Q ss_pred eccCcccccCCC-CcccCCCCccccccccCCCCCCcC
Q 045323 695 SVAFNNLSGKTP-DRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 695 ~ls~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
++++|++...-. ..+..+.......+..+.+.|..+
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 999999975422 111111122334455677777654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.02 E-value=9e-08 Score=100.14 Aligned_cols=57 Identities=7% Similarity=-0.021 Sum_probs=32.7
Q ss_pred hcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEecc
Q 045323 277 EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVA 337 (740)
Q Consensus 277 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~ 337 (740)
....+|+.+.+... ++.....+|.++.+|+.+++..+ ++ .++...+..+ +|+.+.+.
T Consensus 43 ~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~ 99 (379)
T 4h09_A 43 KDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGM 99 (379)
T ss_dssp GGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEEC
T ss_pred ccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECC
Confidence 45667777777542 44445566777777777777543 43 4444444433 45555443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-08 Score=101.93 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=74.8
Q ss_pred ecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcC
Q 045323 612 EVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691 (740)
Q Consensus 612 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 691 (740)
.+..+.+|+.+++..+ +.......|.++++|+.+.+.++.++.+...+|.++++|++++|..+ ++.+...+|.++++|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 3445567888888654 44455667888999999999988888888889999999999999765 665666788889999
Q ss_pred ceeeccCcccccCCCCcccCCC
Q 045323 692 AVFSVAFNNLSGKTPDRVAQFG 713 (740)
Q Consensus 692 ~~L~ls~N~l~~~~~~~~~~~~ 713 (740)
+.+.+..+ ++.+....|...+
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSS
T ss_pred CEEEECCc-cCEEchhHhhCCC
Confidence 99988755 5555566665543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-09 Score=108.50 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=54.7
Q ss_pred cCCCccEEEcccCcccccChhhhh---cCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCccCccCCccccc
Q 045323 615 PLHSMSGLDLSCNKLIGEIPLQIG---ELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNNLNGKIPPRLIE 687 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~~~~~l~---~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 687 (740)
.+++|+.|++++|.+....+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.|+...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356788888888877644444443 367888888888888764 3344455678888888888877433223332
Q ss_pred -CCcCceeeccCcc
Q 045323 688 -LNALAVFSVAFNN 700 (740)
Q Consensus 688 -l~~L~~L~ls~N~ 700 (740)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3557888776
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=95.25 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=98.7
Q ss_pred hcCCCCCCEEEcCCCCCCC--------CCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCch
Q 045323 251 LYHQHDLEYVDLSHLNLTR--------EFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPI 322 (740)
Q Consensus 251 l~~l~~L~~L~L~~~~~~~--------~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 322 (740)
...+++|+.|.+....... .....++..+|+|++|+++++.... .+. + .+++|++|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 4566788888886543210 1122344677889999988773221 222 3 267888888888776643333
Q ss_pred hhhh-cCCCCcEEeccCC--cccccC-CCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecC
Q 045323 323 EIGE-VLPNLVVLNVATN--AFNGSI-PSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDI 398 (740)
Q Consensus 323 ~~~~-~l~~L~~L~l~~n--~~~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 398 (740)
.+.. .+|+|+.|+++.+ ...+.. ...+.... ....+|+|+.|++.+|.+.+..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l-----------------------~~~~~p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF-----------------------SKDRFPNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS-----------------------CTTTCTTCCEEEEESCTTHHHH
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHH-----------------------hcCCCCCcCEEeCCCCCCchHH
Confidence 3332 3678888877532 111000 00000000 0013456666666665554321
Q ss_pred CcCC---CCCCCCceEeCCCcccccC----CCcCCCCCCCCCEEeCCCCcCcCCchhhhcC-CCCCCEEECCCCc
Q 045323 399 PKTL---SNCSALQGLYISDNNISGN----IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQ-LRHLEILDLSRNN 465 (740)
Q Consensus 399 ~~~l---~~~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~ 465 (740)
+..+ ..+++|++|+++.|.+.+. ++..+..+++|+.|++++|.+++.....+.. + ...++++.+.
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 1111 2356677777777766542 2223345677777777777766444444433 2 3556776655
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=6.3e-08 Score=89.50 Aligned_cols=85 Identities=13% Similarity=0.168 Sum_probs=49.3
Q ss_pred CccEEEcccCccccc----ChhhhhcCCCCcEEECcCCcCccc----CCccccCCCCCCEEeC--CCCccCcc----CCc
Q 045323 618 SMSGLDLSCNKLIGE----IPLQIGELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDL--SYNNLNGK----IPP 683 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L--s~n~l~~~----~~~ 683 (740)
.|++|++++|++... +...+...++|++|+|++|.+++. +...+...++|++|+| ++|.|... +..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 455555555555432 233344456666666666666643 3445556666777777 66766632 334
Q ss_pred ccccCCcCceeeccCcccc
Q 045323 684 RLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 684 ~l~~l~~L~~L~ls~N~l~ 702 (740)
.+...+.|+.|++++|.+.
T Consensus 146 ~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEeccCCCCC
Confidence 4555567777777777664
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.9e-07 Score=78.92 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=48.7
Q ss_pred CEEeCCCCccC-ccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 668 ESLDLSYNNLN-GKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 668 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
..++.++++++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|.+|||.|+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 36777777775 34554433 3688888888888888888888889999999999999999985
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=9.7e-08 Score=88.23 Aligned_cols=121 Identities=10% Similarity=0.108 Sum_probs=87.5
Q ss_pred CcccCCCCCCcEEecccC-ccccc----CCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhc
Q 045323 507 PDWMNRLPQLRYLILANN-GLEGE----MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILY 581 (740)
Q Consensus 507 ~~~~~~~~~L~~L~ls~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 581 (740)
...+...++|++|++++| .+... +...+...++|++|++++|.+.+.....+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~--------------------- 87 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE--------------------- 87 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH---------------------
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH---------------------
Confidence 345667889999999998 88743 2344666789999999999876322111111
Q ss_pred cchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccccc----ChhhhhcCCCCcEEEC--cCCcCcc
Q 045323 582 QLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE----IPLQIGELSRIHTLNL--SHNNLTG 655 (740)
Q Consensus 582 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L--~~N~l~~ 655 (740)
.+...+.|+.|++++|.+... +...+...++|++|+| ++|.++.
T Consensus 88 ------------------------------~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 88 ------------------------------MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp ------------------------------HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred ------------------------------HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 112335799999999998754 3556777789999999 8899986
Q ss_pred c----CCccccCCCCCCEEeCCCCccC
Q 045323 656 E----SPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 656 ~----~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
. +...+...++|++|+|++|.+.
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4 3456666789999999999986
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-07 Score=92.18 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=54.7
Q ss_pred hcCCCCcEEECcCCcCccc--CCccccCCCCCCEEeCCCCccCccCCcccccCC--cCceeeccCcccccCCCC------
Q 045323 638 GELSRIHTLNLSHNNLTGE--SPVTFSHMKQVESLDLSYNNLNGKIPPRLIELN--ALAVFSVAFNNLSGKTPD------ 707 (740)
Q Consensus 638 ~~l~~L~~L~L~~N~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~ls~N~l~~~~~~------ 707 (740)
.++++|+.|+|++|++++. +|..+..+++|+.|+|++|+|++. +.+..+. +|+.|++++|++++..|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4577888888888888763 345566778888888888888754 3334444 788888888888765552
Q ss_pred -cccCCCCccccc
Q 045323 708 -RVAQFGTFEEDS 719 (740)
Q Consensus 708 -~~~~~~~l~~l~ 719 (740)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 345667777665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=83.83 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=64.7
Q ss_pred ccCCCccEEEcccCcccc--cChhhhhcCCCCcEEECcCCcCcccCCccccCCC--CCCEEeCCCCccCccCC-------
Q 045323 614 QPLHSMSGLDLSCNKLIG--EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMK--QVESLDLSYNNLNGKIP------- 682 (740)
Q Consensus 614 ~~~~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~------- 682 (740)
..+++|+.|+|++|++.+ .+|..+..+++|+.|+|++|++++. ..+..++ +|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356799999999999987 4456778999999999999999965 2334444 99999999999997665
Q ss_pred cccccCCcCceee
Q 045323 683 PRLIELNALAVFS 695 (740)
Q Consensus 683 ~~l~~l~~L~~L~ 695 (740)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2466788998876
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.06 E-value=6.8e-07 Score=80.02 Aligned_cols=84 Identities=10% Similarity=0.061 Sum_probs=68.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCc-CcccCCccccCC----CCCCEEeCCCCc-cCccCCcccccCCcC
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNN-LTGESPVTFSHM----KQVESLDLSYNN-LNGKIPPRLIELNAL 691 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~L 691 (740)
.|+.||+++|.++......+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 78999999999887777778899999999999994 887665566654 479999999985 876545567788999
Q ss_pred ceeeccCccc
Q 045323 692 AVFSVAFNNL 701 (740)
Q Consensus 692 ~~L~ls~N~l 701 (740)
+.|++++++-
T Consensus 142 ~~L~L~~c~~ 151 (176)
T 3e4g_A 142 KYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTT
T ss_pred CEEECCCCCC
Confidence 9999999863
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-06 Score=77.57 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=73.1
Q ss_pred hhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCc-cCccCCcccccC----CcCceeeccCcc-cccCCCC
Q 045323 634 PLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN-LNGKIPPRLIEL----NALAVFSVAFNN-LSGKTPD 707 (740)
Q Consensus 634 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~ls~N~-l~~~~~~ 707 (740)
|.....-..|++|||+++.+++..-..+..+++|++|+|++|. |++..-..+..+ ++|+.|+|++|. ++..--.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333334689999999999998888888999999999999995 775444445553 479999999996 6544334
Q ss_pred cccCCCCccccccccCCCCCC
Q 045323 708 RVAQFGTFEEDSYEGNPFLCG 728 (740)
Q Consensus 708 ~~~~~~~l~~l~l~~Np~~c~ 728 (740)
.++.+++|++|+++++|..=+
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 457789999999999876544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=4e-05 Score=69.92 Aligned_cols=110 Identities=6% Similarity=0.058 Sum_probs=77.8
Q ss_pred ccCCCccEEEcccC-ccccc----ChhhhhcCCCCcEEECcCCcCcccC----CccccCCCCCCEEeCCCCccCcc----
Q 045323 614 QPLHSMSGLDLSCN-KLIGE----IPLQIGELSRIHTLNLSHNNLTGES----PVTFSHMKQVESLDLSYNNLNGK---- 680 (740)
Q Consensus 614 ~~~~~L~~L~ls~n-~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~---- 680 (740)
..-+.|++|+++++ ++... +.+.+..-+.|++|+|++|++.+.. .+.+..-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34568999999986 66432 4556677799999999999998643 44555678899999999999842
Q ss_pred CCcccccCCcCceeeccCccc---cc----CCCCcccCCCCccccccccC
Q 045323 681 IPPRLIELNALAVFSVAFNNL---SG----KTPDRVAQFGTFEEDSYEGN 723 (740)
Q Consensus 681 ~~~~l~~l~~L~~L~ls~N~l---~~----~~~~~~~~~~~l~~l~l~~N 723 (740)
+.+.+...+.|+.|+|++|.. .. .+.+.+..-++|++++++.|
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 445566677899999987633 21 12233444578888888754
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=6.3e-05 Score=68.64 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=68.6
Q ss_pred cCCCccEEEcccCccccc----ChhhhhcCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCc---cCc----
Q 045323 615 PLHSMSGLDLSCNKLIGE----IPLQIGELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNN---LNG---- 679 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~---l~~---- 679 (740)
.-+.|+.|+|++|++... +.+.+..-+.|++|+|++|.|+.. +.+++..-+.|++|+|++|. +..
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 345899999999999654 345566779999999999999964 44567777889999999764 342
Q ss_pred cCCcccccCCcCceeeccCcccc
Q 045323 680 KIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 680 ~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
.+.+.+...+.|+.|+++.|.+.
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhCCCcCeEeccCCCcc
Confidence 24566777899999999988754
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0018 Score=55.14 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=46.8
Q ss_pred cEEEcccCccc-ccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 620 SGLDLSCNKLI-GEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 620 ~~L~ls~n~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
..++.+++.++ ..+|..+. .+|++|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889998886 35665432 57999999999999888888899999999999999886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 740 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.001 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-11 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 9e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 7e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 6e-06 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 2e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 5e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.001 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 78.5 bits (192), Expect = 5e-16
Identities = 81/384 (21%), Positives = 137/384 (35%), Gaps = 36/384 (9%)
Query: 113 LSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTEN 172
L + + T+ L ++ LQ + ++ G + L L ++ S NQLT
Sbjct: 27 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLT-- 79
Query: 173 ISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQ 232
+PL NLT + ++ ++NN L N + L F+ I + + + +
Sbjct: 80 -DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138
Query: 233 LTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL 292
L+S ++ + DL L + NK L ++
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198
Query: 293 FGPF---------PLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG 343
P+ NL L ++ N+L+ + L NL L++A N +
Sbjct: 199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISN 255
Query: 344 SIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLS 403
P S G L L L N + S LT L L L+ N P +
Sbjct: 256 LAPLS-------GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS-- 304
Query: 404 NCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSR 463
N L L + NNIS P + +L+ L + NN++ S+ L ++ L
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360
Query: 464 NNISGSLPSCSSPFNIRRVHLSKN 487
N IS P + I ++ L+
Sbjct: 361 NQISDLTPLANLT-RITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 70.4 bits (171), Expect = 2e-13
Identities = 49/346 (14%), Positives = 107/346 (30%), Gaps = 28/346 (8%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
+ L ++ L L ++N N P L N + L + +++N I+
Sbjct: 46 VTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 101
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
P + P+ + R + + + S + +
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161
Query: 480 RRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMN-RLPQLRYLILANNGLEGEMPLQLCWLN 538
L + N + +L L LI NN + PL +
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT-- 219
Query: 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598
L + L+ N L L +++ D + + L L +L L +
Sbjct: 220 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 277
Query: 599 LTNFT-----------TKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLN 647
++ Q + L +++ L L N + P + L+++ L
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 335
Query: 648 LSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIP----PRLIELN 689
++N ++ + +++ + L +N ++ P R+ +L
Sbjct: 336 FANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 379
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 68.5 bits (166), Expect = 9e-13
Identities = 69/380 (18%), Positives = 126/380 (33%), Gaps = 48/380 (12%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSS--------FGNTWPW 355
+ L ++ I+ E L NL +N + N P N
Sbjct: 44 DQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD 415
+ + L NL+ + +S S L L
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160
Query: 416 NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSS 475
L NL+ L+ + + +N+ S +L +LE L + N IS P
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESLIATNNQISDITPLGIL 218
Query: 476 PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLC 535
N+ + L+ N L+ + L L L LANN + PL
Sbjct: 219 T-NLDELSLNGNQLKDI---------------GTLASLTNLTDLDLANNQISNLAPL--S 260
Query: 536 WLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHN 595
L KL + L N +S P L ++ + ++ +D + L L L ++N
Sbjct: 261 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318
Query: 596 HKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG 655
++ ++ L + L + NK+ + L+ I+ L+ HN ++
Sbjct: 319 ISDISPVSS-----------LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365
Query: 656 ESPVTFSHMKQVESLDLSYN 675
+P +++ ++ L L+
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 62.3 bits (150), Expect = 7e-11
Identities = 63/388 (16%), Positives = 127/388 (32%), Gaps = 42/388 (10%)
Query: 77 LSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQ 136
+S + + D S ++ + +L ++ SN+ L + L +LV +
Sbjct: 38 VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQINFSNNQLTDITPLKNLTKLVDIL 94
Query: 137 EVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQI 196
N +++ N + ++ + ++ ++ L N
Sbjct: 95 MNNNQIADITPLANLT--------------NLTGLTLFNNQITDIDPLKNLTNLNRLELS 140
Query: 197 SISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHD 256
S ++ S L + T L L + + + S I +
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200
Query: 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKL 316
+ ++ ++ P + L LSL L L NL LD++NN++
Sbjct: 201 --SLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQI 253
Query: 317 QGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFS 376
P+ L L L + N + P + + S
Sbjct: 254 SNLAPLSG---LTKLTELKLGANQISNISPLAGLTALTNLELNENQ---------LEDIS 301
Query: 377 KEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIM 436
NL L L L N+ P +S+ + LQ L+ ++N +S + L NL+ ++ +
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357
Query: 437 MPNNRLEGPIPSAFCQLRHLEILDLSRN 464
+N++ P L + L L+
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 61.6 bits (148), Expect = 1e-10
Identities = 66/414 (15%), Positives = 120/414 (28%), Gaps = 68/414 (16%)
Query: 154 ANLTYLRLLDVSFNQLTENISSSPLMNLTYI-------------------EELWLSNNHF 194
L + +T+ +S + L +T + ++ SNN
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 78
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
+ P N +KL + + + + ++ D
Sbjct: 79 T---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
+ L + + + L ++ + + V
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL 374
L NL L N + P L+ L L+ N L+
Sbjct: 196 -------------LTNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLKD-- 233
Query: 375 FSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDA 434
+LT L L+L N P LS + L L + N IS P L L+ L
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 289
Query: 435 IMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLL 494
+ + N+ S L++L L L NNIS + SS ++R+ + N +
Sbjct: 290 LELNENQ--LEDISPISNLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANNKVSD--- 343
Query: 495 GDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHN 548
+ L + +L +N + P L L ++ + L+
Sbjct: 344 ------------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.9 bits (136), Expect = 3e-09
Identities = 49/262 (18%), Positives = 94/262 (35%), Gaps = 22/262 (8%)
Query: 80 LNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVN 139
++ + + + + +A+L L + N L +L L+ +
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 203
Query: 140 IDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISIS 199
N +S P LT L L ++ NQL + L +LT + +L L+NN
Sbjct: 204 ATNNQISDITPLG--ILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP 258
Query: 200 LEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ-HDLE 258
L ++LK I +++P LT+++ ++ + +L
Sbjct: 259 LSGLTKLTELKLGANQIS--------NISPLAGLTALTNLELNENQLEDISPISNLKNLT 310
Query: 259 YVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQG 318
Y+ L N++ P + KL+RL N + L N+ L +N++
Sbjct: 311 YLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVSSL--ANLTNINWLSAGHNQISD 365
Query: 319 HIPIEIGEVLPNLVVLNVATNA 340
P+ L + L + A
Sbjct: 366 LTPLAN---LTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 0.001
Identities = 32/218 (14%), Positives = 69/218 (31%), Gaps = 18/218 (8%)
Query: 3 WWSEGCLEQEGYALLKLKHDFFNNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLN 62
+ + N + + N + + L L ++
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210
Query: 63 ASL-FTSFQQLELLDLSILNFKNLEYF----NMDFCTAFSNSFLQMSEL--MASLKYLSL 115
L+ L L+ K++ N+ +N ++ L + L L L
Sbjct: 211 DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 270
Query: 116 SNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISS 175
+ ++ GL N++ N ++NL L L + FN ++
Sbjct: 271 GANQISNISPLAGLT-----ALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS---DI 322
Query: 176 SPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFD 213
SP+ +LT ++ L+ +NN + N + + +
Sbjct: 323 SPVSSLTKLQRLFFANNKVS---DVSSLANLTNINWLS 357
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 70.9 bits (172), Expect = 8e-14
Identities = 59/316 (18%), Positives = 108/316 (34%), Gaps = 49/316 (15%)
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEG--PIPSAFCQLRHLEILDLSRNNISGSLPSCSS 475
+ + T+ ++ LD + L PIPS+ L +L L + N +L
Sbjct: 41 VLCDTDTQTYRVNNLD---LSGLNLPKPYPIPSSLANLPYLNFLYIGGIN---NLVGPIP 94
Query: 476 PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLC 535
P + L + ++ ++ IPD+++++ L L + N L G +P +
Sbjct: 95 PAIAKLTQLHYLYI--------THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 536 WLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHN 595
L L + N +SG IP + LF +L N
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGS--------FSKLFTSMTISRNRLTGKIPPTFANLN 198
Query: 596 HKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG 655
++ + + + ++G ++ L+L +N + G
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 656 ESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTF 715
P + +K + SL++S+NNL G+IP F
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------------------GGNLQRF 293
Query: 716 EEDSYEGNPFLCGQPL 731
+ +Y N LCG PL
Sbjct: 294 DVSAYANNKCLCGSPL 309
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 57.8 bits (138), Expect = 1e-09
Identities = 60/329 (18%), Positives = 106/329 (32%), Gaps = 36/329 (10%)
Query: 8 CLEQEGYALLKLKHDF----------FNNHCCQ--WACVECN--TTTGKVISLDLDGTRK 53
C Q+ ALL++K D CC W V C+ T T +V +LDL G
Sbjct: 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 54 LGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYL 113
+ S+ N L + + + L YL
Sbjct: 63 PKPYP----------------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 114 SLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENI 173
++++ ++G I D L ++ N LSG+LP +++L L + N+++ I
Sbjct: 107 YITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 174 SSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQL 233
S + +S N I + ++ + Q
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 234 TSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLF 293
+ +L +DL + + P L + K L L++ +L
Sbjct: 226 IH---LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLC 281
Query: 294 GPFPLPIHCHKNLRVLDVSNNKLQGHIPI 322
G P + + V +NNK P+
Sbjct: 282 GEIPQGGNL-QRFDVSAYANNKCLCGSPL 309
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 57.1 bits (136), Expect = 2e-09
Identities = 56/265 (21%), Positives = 100/265 (37%), Gaps = 9/265 (3%)
Query: 225 SSLTPKFQLTSISLFGHGDSGIF--PKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKL 282
+ T +++ ++ L G + P L + L ++ + +N + K +L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 283 KRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
L + + ++ G P + K L LD S N L G +P I + PNLV + N +
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRIS 162
Query: 343 GSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTL 402
G+IP S+G+ N L G++ NL
Sbjct: 163 GAIPDSYGSFSKLFTSMTIS----RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462
S+ + N ++G L+ + + NNR+ G +P QL+ L L++S
Sbjct: 219 SDKN--TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 463 RNNISGSLPSCSSPFNIRRVHLSKN 487
NN+ G +P + + N
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 55.5 bits (132), Expect = 8e-09
Identities = 42/266 (15%), Positives = 77/266 (28%), Gaps = 10/266 (3%)
Query: 159 LRLLDVSFNQLTENISSSP-LMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIY 217
+ LD+S L + L NL Y+ L++ + + ++L +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 218 AEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLE 277
L+ L ++ + SG P + +L + ++ P+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 278 KNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVA 337
+K +++ L G P V N + + +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI----- 226
Query: 338 TNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGD 397
+F L L L NN + G L L L LN+ N+ G+
Sbjct: 227 ---HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 398 IPKTLSNCSALQGLYISDNNISGNIP 423
IP N ++N P
Sbjct: 284 IP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 48/274 (17%), Positives = 86/274 (31%), Gaps = 14/274 (5%)
Query: 135 LQEVNIDRNNLSG--SLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNN 192
+ +++ NL +P LANL YL L + + LT + L++++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 193 HFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLY 252
+ +I + L D A T S++ L I+ G+ SG P
Sbjct: 112 NVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 253 HQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVS 312
L N N+ L ++
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 313 NNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQG 372
N+ + + NL L++ N G++P +L L +S N+L G
Sbjct: 231 NSLAFDLGKVGLS---KNLNGLDLRNNRIYGTLPQGLTQ-----LKFLHSLNVSFNNLCG 282
Query: 373 QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCS 406
++ + NL + N + P L C+
Sbjct: 283 EI-PQGGNLQRFDVSAYANNKCLCGSP--LPACT 313
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.8 bits (164), Expect = 7e-13
Identities = 48/279 (17%), Positives = 94/279 (33%), Gaps = 34/279 (12%)
Query: 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
L + +N I+ NL L +++ NN++ P AF L LE L LS+N +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 468 GSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLE 527
LP N + N L Q+ + L N L+
Sbjct: 93 -ELPEKMPKTLQELRV--------------HENEITKVRKSVFNGLNQMIVVELGTNPLK 137
Query: 528 --GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQ 585
G + KL + ++ N++ +++ + + N + D L L
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNN 196
Query: 586 LQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHT 645
L L ++++ + N + + E+ N + ++P + + I
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHL----------NNNKLVKVPGGLADHKYIQV 246
Query: 646 LNLSHNNLTGESPVTF------SHMKQVESLDLSYNNLN 678
+ L +NN++ F + + L N +
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.4 bits (158), Expect = 5e-12
Identities = 52/271 (19%), Positives = 91/271 (33%), Gaps = 20/271 (7%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L L NN + NL L L L N P + L+ LY+S N +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 420 GNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
L L + N + S F L + +++L N + S + +
Sbjct: 93 ELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 480 RRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
+++ ++ + + IP + P L L L N + L LN
Sbjct: 150 KKLSYI----------RIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 196
Query: 540 LQLVDLSHNNLSGQIPHCLYNISFNYREDNHDL-FDQDPQILYQLPQLQILYTNYHNHKY 598
L + LS N++S L N ++ + P L +Q++Y + +N
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN--- 253
Query: 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL 629
++ + S SG+ L N +
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.7 bits (156), Expect = 8e-12
Identities = 54/255 (21%), Positives = 89/255 (34%), Gaps = 23/255 (9%)
Query: 298 LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357
+P + +LD+ NNK+ + L NL L + N + P +F
Sbjct: 25 VPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAP-----L 78
Query: 358 FYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNN 417
LE L LS N L+ L +L+ + + L+ ++ L +
Sbjct: 79 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLK 137
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477
SG + L I + + + L L L N I+ +
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAA----- 189
Query: 478 NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWL 537
S L LS+N +++ + P LR L L NN L ++P L
Sbjct: 190 -------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 241
Query: 538 NKLQLVDLSHNNLSG 552
+Q+V L +NN+S
Sbjct: 242 KYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.7 bits (138), Expect = 1e-09
Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 11/206 (5%)
Query: 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555
DL N++ L L LIL NN + P L KL+ + LS N L +P
Sbjct: 37 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LP 95
Query: 556 HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP 615
+ R +++ + L Q+ ++ + K Q
Sbjct: 96 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-------GAFQG 148
Query: 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYN 675
+ +S + ++ + + G + L+L N +T + + + L LS+N
Sbjct: 149 MKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 676 NLNGKIPPRLIELNALAVFSVAFNNL 701
+++ L L + N L
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKL 231
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.0 bits (136), Expect = 2e-09
Identities = 49/270 (18%), Positives = 88/270 (32%), Gaps = 13/270 (4%)
Query: 104 SELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLD 163
+L L L N+ + I D L L + + N +S P A L L L
Sbjct: 27 KDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85
Query: 164 VSFNQLTENISSSPLMNLTYIEELWLSNNHFQ-ISISLEPFFNHSKLKFFDGDIYAEIET 222
+S NQL P ++EL + N + S+ N + +
Sbjct: 86 LSKNQLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141
Query: 223 SHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKL 282
+ + +L+ I + + I L + L +T+ L+ L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAAS-LKGLNNL 197
Query: 283 KRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
+L L S+ + +LR L ++NNKL + V+ + N +
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNIS 255
Query: 343 GSIPSSF-GNTWPWGCFYLEYLVLSNNSLQ 371
+ F + + L +N +Q
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (153), Expect = 1e-11
Identities = 50/268 (18%), Positives = 90/268 (33%), Gaps = 22/268 (8%)
Query: 298 LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357
+P+ + + + N++ +P NL +L + +N ++F
Sbjct: 26 VPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84
Query: 358 FYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNN 417
L + L +L L+LD P +ALQ LY+ DN
Sbjct: 85 LDLSDNAQLRSVDPATF----HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477
+ +L L + + NR+ AF L L+ L L +N ++ P
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH----- 195
Query: 478 NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQ--LC 535
+ L + L N L++ + + L L+YL L +N + +
Sbjct: 196 -------AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248
Query: 536 WLNKLQLVDLSHNNLSGQIPHCLYNISF 563
WL K S + + +P L
Sbjct: 249 WLQKF---RGSSSEVPCSLPQRLAGRDL 273
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (148), Expect = 6e-11
Identities = 47/299 (15%), Positives = 86/299 (28%), Gaps = 48/299 (16%)
Query: 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNR 441
+R+ L GN + C L L++ N ++ L+ L+ + + +N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 442 LEGPI-PSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYN 500
+ P+ F L L L L R + P + L N
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL------------YLQDN 139
Query: 501 RLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYN 560
L + D L L +L L N + L+ L + L N ++ PH +
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 561 ISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620
+ L T + PL ++
Sbjct: 200 L-------------------------------GRLMTLYLFANNLSALPTEALAPLRALQ 228
Query: 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679
L L+ N + + + + S + + P + + L+ N+L G
Sbjct: 229 YLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 4e-09
Identities = 47/315 (14%), Positives = 94/315 (29%), Gaps = 39/315 (12%)
Query: 130 CELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWL 189
C + + L ++P + + + + N+++ + ++ + LWL
Sbjct: 8 CYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWL 63
Query: 190 SNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPK 249
+N + + D ++ +L ++ L G + P
Sbjct: 64 HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123
Query: 250 FLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVL 309
L+Y+ L L + NL L
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTF-------------------------RDLGNLTHL 158
Query: 310 DVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNS 369
+ N++ +P L +L L + N P +F + Y L N+
Sbjct: 159 FLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY-----LFANN 212
Query: 370 LQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNL 429
L L L+ L L+ N ++ D + LQ S + + ++P RL
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271
Query: 430 SFLDAIMMPNNRLEG 444
+ N L+G
Sbjct: 272 DLKR---LAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 8e-09
Identities = 51/256 (19%), Positives = 82/256 (32%), Gaps = 14/256 (5%)
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
+ + L ++ P + L L L + L L LD+S+N
Sbjct: 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 315 KLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL 374
+ L L L+ + G G L+YL L +N+LQ
Sbjct: 91 AQLRSVDPATFHGLGRLHTLH-----LDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 375 FSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDA 434
+L L L L GN + +L L + N ++ P +L L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 435 IMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNM------ 488
+ + N L A LR L+ L L+ N + +++ S +
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265
Query: 489 --LQGPLLGDLSYNRL 502
L G L L+ N L
Sbjct: 266 QRLAGRDLKRLAANDL 281
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 15/240 (6%)
Query: 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555
L + +P + + + L N + L ++ L N L+
Sbjct: 17 SCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 556 HCLYNISF---NYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYE 612
++ DN L DP + L +L L+ + + L
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL---------GPGL 124
Query: 613 VQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672
+ L ++ L L N L +L + L L N ++ F + ++ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 673 SYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732
N + P +L L + NNLS + +A + NP++C
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 7e-07
Identities = 47/265 (17%), Positives = 85/265 (32%), Gaps = 22/265 (8%)
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLS 498
NR+ ++F R+L IL L N ++ + + + +
Sbjct: 41 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN---------- 90
Query: 499 YNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCL 558
+L S P + L +L L L GL+ P L LQ + L N L
Sbjct: 91 -AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-- 147
Query: 559 YNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHS 618
+F + LF +I + + N ++ + + L
Sbjct: 148 ---TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH--VHPHAFRDLGR 202
Query: 619 MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
+ L L N L + L + L L+ N + ++ S + +
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVP 261
Query: 679 GKIPPRLIELNALAVFSVAFNNLSG 703
+P RL + + +A N+L G
Sbjct: 262 CSLPQRLAGRD---LKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 8e-07
Identities = 50/237 (21%), Positives = 85/237 (35%), Gaps = 10/237 (4%)
Query: 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNIS 291
LT + L + + I LE +DLS R +L L L
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 292 LFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGN 351
L P L+ L + +N LQ + L NL L + N + +F
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAF-- 173
Query: 352 TWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGL 411
G L+ L+L N + +L +L L L N+ + L+ ALQ L
Sbjct: 174 ---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
Query: 412 YISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG 468
++DN + R ++L ++ + +P +L ++ L+ N++ G
Sbjct: 231 RLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (149), Expect = 9e-11
Identities = 45/447 (10%), Positives = 103/447 (23%), Gaps = 14/447 (3%)
Query: 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISL----FGPFPLPIHCHKNLRVLDV 311
D++ +D+ L+ LL ++ + + L + L + + L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 312 SNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQ 371
+N+L + + L + N + + L L + S
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 372 GQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSF 431
+ L + + +LS S + T N
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 432 LDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG 491
+ + L+ + + + + + +K G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242
Query: 492 PLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHN-NL 550
+S + + + L L+ L
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302
Query: 551 SGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYT 610
+ + + + + L
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362
Query: 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGE----LSRIHTLNLSHNNLTGESPVTFS---- 662
QP + L L+ + + + L+LS+N L +
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422
Query: 663 -HMKQVESLDLSYNNLNGKIPPRLIEL 688
+E L L + ++ RL L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (105), Expect = 2e-05
Identities = 53/463 (11%), Positives = 114/463 (24%), Gaps = 32/463 (6%)
Query: 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSG----SLPWCLANLTYLRLLDV 164
++ L + L+ + L L Q V +D L+ + L L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 165 SFNQLT----ENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEI 220
N+L + I++L L N + L E+
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ-----EL 117
Query: 221 ETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNK 280
S + L + L + ++ R P++
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177
Query: 281 KLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNA 340
L + L++ I +L L + +N
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237
Query: 341 FNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK 400
+ L L + + + + + K + + ++
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297
Query: 401 TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460
+ + ++ + + + + + +
Sbjct: 298 EGARLLC--ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355
Query: 461 LSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLI 520
R G S +R + L+ + S++ + LR L
Sbjct: 356 GVRELCQGLGQPGS---VLRVLWLADCDVSDSSC---------SSLAATLLANHSLRELD 403
Query: 521 LANNGLEGEMPLQLC-----WLNKLQLVDLSHNNLSGQIPHCL 558
L+NN L LQL L+ + L S ++ L
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 2e-04
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 622 LDLSCNKLIGEIPLQIGE-LSRIHTLNLSHNNLTGESPVT----FSHMKQVESLDLSYNN 676
LD+ C +L ++ L + + L LT + L+L N
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 677 LNGKIPPRLIELNALAVFSVAFNNLSG 703
L +++ + +L
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 5e-08
Identities = 32/232 (13%), Positives = 78/232 (33%), Gaps = 15/232 (6%)
Query: 454 RHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRL 513
+ + R+ + L SPF ++ + LS ++++ S + +++
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV------------STLHGILSQC 70
Query: 514 PQLRYLILANNGLEGEMPLQLCWLNKLQLVDLS--HNNLSGQIPHCLYNISFNYREDNHD 571
+L+ L L L + L + L ++LS + L + S +
Sbjct: 71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130
Query: 572 LFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG 631
FD + + N K L T + + + L
Sbjct: 131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 190
Query: 632 EIPLQIGELSRIHTLNLSH-NNLTGESPVTFSHMKQVESLDLSYNNLNGKIP 682
+ + +L+ + L+LS ++ E+ + + +++L + +G +
Sbjct: 191 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 9e-07
Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 19/278 (6%)
Query: 409 QGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG 468
Q L ++ N+ ++ RL + + A P + ++ P+ F R ++ +DLS + I
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60
Query: 469 SLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYL--ILANNGL 526
S + +LS L RL+ I + + + L L +
Sbjct: 61 STLHGILSQCSKLQNLS-----------LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 109
Query: 527 EGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQL 586
E + L ++L ++LS + + + +L +
Sbjct: 110 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 169
Query: 587 QILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLS-CNKLIGEIPLQIGELSRIHT 645
+ H L++ + E L+ + L LS C +I E L++GE+ + T
Sbjct: 170 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229
Query: 646 LNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPP 683
L + G + + L ++ ++ P
Sbjct: 230 LQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARP 264
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 40/253 (15%), Positives = 79/253 (31%), Gaps = 26/253 (10%)
Query: 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQ 168
++++ LSNS + + L L + LQ ++++ LS + LA + L L++S
Sbjct: 47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106
Query: 169 LTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLT 228
+ L++ L N + + +
Sbjct: 107 GFSEFALQTLLS--SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL--------- 155
Query: 229 PKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLV 288
+ + +L ++DLS + + + L+ LSL
Sbjct: 156 -------SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 208
Query: 289 NIS-LFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPS 347
+ L + L+ L V G + + E LP+ L + + F
Sbjct: 209 RCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ-LLKEALPH---LQINCSHFTTIARP 264
Query: 348 SFGNTWP---WGC 357
+ GN WG
Sbjct: 265 TIGNKKNQEIWGI 277
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 4e-05
Identities = 38/227 (16%), Positives = 74/227 (32%), Gaps = 4/227 (1%)
Query: 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDV-SNNK 315
++++DLS+ + + +L + KL+ LSL + L P + + NL L++ +
Sbjct: 48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107
Query: 316 LQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV-LSNNSLQGQL 374
+ L LN++ L N + L
Sbjct: 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 167
Query: 375 FSKEFNLTKLKRLNLDGNHFIGD-IPKTLSNCSALQGLYISD-NNISGNIPTRLGNLSFL 432
+ L L+L + + + + + LQ L +S +I LG + L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227
Query: 433 DAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479
+ + +G + L HL+I I+ I
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 38/233 (16%), Positives = 72/233 (30%), Gaps = 8/233 (3%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGD-IPKTLSNCSALQGLYISDNNI 418
+ + + L F+ +++ ++L + + LS CS LQ L + +
Sbjct: 25 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83
Query: 419 SGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFN 478
S I L S L + + Q L N+S
Sbjct: 84 SDPIVNTLAKNSNLVRLNLSGCSG---FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140
Query: 479 IRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLN 538
+ H+S+ + Q L G + + + + + L+ + + LN
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200
Query: 539 KLQLVDLSH-NNLSGQIPHCLYNISFNYREDNHDLFDQD--PQILYQLPQLQI 588
LQ + LS ++ + L I + + LP LQI
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 33/277 (11%), Positives = 87/277 (31%), Gaps = 34/277 (12%)
Query: 307 RVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLS 366
+ LD++ L + + + ++ + + + F ++++ LS
Sbjct: 3 QTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR------VQHMDLS 54
Query: 367 NNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTR 425
N+ ++ +KL+ L+L+G I TL+ S L L +S + +
Sbjct: 55 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114
Query: 426 -----LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIR 480
L L+ + + + + L+LS + S+
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174
Query: 481 RVHLSKNMLQGPLLGDLSY-----------------NRLNSNIPDWMNRLPQLRYLILAN 523
+ ++ +L + + + + +P L+ L +
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234
Query: 524 NGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYN 560
+G + L L + ++ ++ + + N
Sbjct: 235 IVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGN 268
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 6e-04
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 3/110 (2%)
Query: 622 LDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681
LDL+ L ++ ++ I + + FS + V+ +DLS + +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62
Query: 682 PPRLIE-LNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730
++ + L S+ LS + +A+ + G
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 50/327 (15%), Positives = 89/327 (27%), Gaps = 18/327 (5%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
E+ ++ LS SLP +L L S N LTE +L + +
Sbjct: 40 AHELELNNLGLS-SLPELPPHLES---LVASCNSLTE--LPELPQSLKSLLVDNNNLKAL 93
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
L + S + L + I +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFG-PFPLPIHCHKNLRVLDVSN 313
E +L L N L + L + + L + N
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 314 NKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTW--PWGCFYLEYLVLSNNSLQ 371
N L+ + N+ + + + G L + N+
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 372 GQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSF 431
++ S L+ LN+ N + ++P L+ L S N+++ +P NL
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNK-LIELPALPPR---LERLIASFNHLA-EVPELPQNLKQ 328
Query: 432 LDAIMMPNNRLEGPIPSAFCQLRHLEI 458
L + N L P + L +
Sbjct: 329 LH---VEYNPLRE-FPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 53/327 (16%), Positives = 99/327 (30%), Gaps = 21/327 (6%)
Query: 377 KEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIM 436
++ + L L+ + +P+ + L+ L S N+++ +P +L L
Sbjct: 33 RDCLDRQAHELELNNLG-LSSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDN 87
Query: 437 MPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGD 496
L L L NN LP + ++ + + N L+
Sbjct: 88 NNLKAL--------SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139
Query: 497 LSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPH 556
S + + L + +L L ++ NN+ ++P
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199
Query: 557 CLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPL 616
+++L P + L L + + L T + L
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259
Query: 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676
+ N EI + LN+S+N L E P + E L S+N+
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNH 315
Query: 677 LNGKIPPRLIELNALAVFSVAFNNLSG 703
L ++P L V +N L
Sbjct: 316 LA-EVPE---LPQNLKQLHVEYNPLRE 338
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 2e-06
Identities = 38/215 (17%), Positives = 56/215 (26%), Gaps = 19/215 (8%)
Query: 472 SCSSPFNIRRVHLSKNMLQ------GPLLG--DLSYNRLNSNIPDWMNRLPQLRYLILAN 523
S + V+ K L LS N L + + +L L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 524 NGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQL 583
E L L +DLSHN L + + + + P +
Sbjct: 65 A--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 584 PQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRI 643
N L + P + L L+ N L + L +
Sbjct: 123 LGELQELYLKGNELK--------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 644 HTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
TL L N+L P F + L N
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 7e-06
Identities = 35/193 (18%), Positives = 57/193 (29%), Gaps = 9/193 (4%)
Query: 298 LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357
LP K+ +L +S N L + L LN+ G
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRA--------ELTKLQVDGT 75
Query: 358 FYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNN 417
+ + +++ L L L L++ N L LQ LY+ N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPF 477
+ P L L+ + + NN L L +L+ L L N++
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH 195
Query: 478 NIRRVHLSKNMLQ 490
+ L N
Sbjct: 196 LLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 45/209 (21%), Positives = 67/209 (32%), Gaps = 14/209 (6%)
Query: 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNK 315
V+ NLT P L K L L L+ + + L L++ +
Sbjct: 11 SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 316 LQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLF 375
L LP L L+++ N S N L
Sbjct: 67 LTKLQVDGT---LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV------SFNRLTSLPL 117
Query: 376 SKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAI 435
L +L+ L L GN P L+ L+ L +++NN++ L L LD +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 436 MMPNNRLEGPIPSAFCQLRHLEILDLSRN 464
++ N L IP F L L N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/183 (13%), Positives = 41/183 (22%), Gaps = 7/183 (3%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHF 194
+++ N L L T L L++ +LT+ L L ++
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92
Query: 195 QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQ 254
+ + + + P L
Sbjct: 93 P------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNN 314
N E P LL + L L L SL+ P L + N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Query: 315 KLQ 317
Sbjct: 206 PWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 41/213 (19%), Positives = 68/213 (31%), Gaps = 11/213 (5%)
Query: 130 CELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWL 189
++ EVN D+ NL+ +LP L +L +S N L S + LM T + +L L
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNL 62
Query: 190 SNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPK 249
L + + LT + + + + +
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ----TLPALTVLDVSFNRLTSLPLG 118
Query: 250 FLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVL 309
L +L+ + L L P L K K N +L ++ +NL L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTL 177
Query: 310 DVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342
+ N L IP L + N +
Sbjct: 178 LLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL 208
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 6e-06
Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 11/141 (7%)
Query: 379 FNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438
N + + L+L G I I + + SDN I L L +++
Sbjct: 15 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVN 71
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLS 498
NNR+ L L L L+ N++ L +++ + +
Sbjct: 72 NNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLT-------YLCILRNP 123
Query: 499 YNRLNSNIPDWMNRLPQLRYL 519
+ ++PQ+R L
Sbjct: 124 VTNKKHYRLYVIYKVPQVRVL 144
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 34/333 (10%), Positives = 83/333 (24%), Gaps = 26/333 (7%)
Query: 378 EFNLTKLK-RLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLG-------NL 429
F++ +L+ + L +++ + +S N I L +L
Sbjct: 2 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+ + R++ IP A L + + + S + +
Sbjct: 62 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121
Query: 490 QGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549
L + + + +C N+L+ +
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179
Query: 550 LSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLY 609
+ Q L+ + + + Q + N +
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239
Query: 610 TYEVQPLHSMSGLDLSCNKLIGEIPLQIGE------LSRIHTLNLSHNNLTGESPVT--- 660
L+ L + + + TL L +N + ++ T
Sbjct: 240 KSWPNLRELG----LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 295
Query: 661 --FSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691
M + L+L+ N + + E+ +
Sbjct: 296 VIDEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 43.8 bits (102), Expect = 2e-05
Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 17/196 (8%)
Query: 487 NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLS 546
+ + +L + + N L + +I N+ ++ +Q +L + + L+
Sbjct: 21 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLN 76
Query: 547 HNNLSGQIPH---------CLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHK 597
N L+ P L DL L I +
Sbjct: 77 GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136
Query: 598 YLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGES 657
+ + L + L L N++ +PL L+++ L LS N+++
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISDLR 194
Query: 658 PVTFSHMKQVESLDLS 673
+ +K ++ L+L
Sbjct: 195 A--LAGLKNLDVLELF 208
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 24/223 (10%), Positives = 62/223 (27%), Gaps = 13/223 (5%)
Query: 428 NLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN 487
L+ I + + + A L + L ++ ++ N+ + L N
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73
Query: 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSH 547
+ + + + + L+ L +L
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 548 NNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQR 607
L + ++ + + L L L L T + +++ +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---- 189
Query: 608 LYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH 650
+ L ++ + L N++ PL S + + L++
Sbjct: 190 ----PLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 26/194 (13%), Positives = 60/194 (30%), Gaps = 13/194 (6%)
Query: 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555
+ + + L + L G+ +Q +LN L ++L N ++ P
Sbjct: 25 AAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQITDLAP 80
Query: 556 HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP 615
+ L + Q + L + + ++ ++
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140
Query: 616 LHSMSGLDL-------SCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVE 668
+ ++S L S + LS++ TL N ++ SP + + +
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198
Query: 669 SLDLSYNNLNGKIP 682
+ L N ++ P
Sbjct: 199 EVHLKNNQISDVSP 212
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 32/191 (16%), Positives = 52/191 (27%), Gaps = 15/191 (7%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSS---------FGNTWP 354
+ L + IE + L NL+ L + N P
Sbjct: 41 DGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97
Query: 355 WGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYIS 414
+ L + + I Y+S
Sbjct: 98 KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157
Query: 415 DNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCS 474
N + T L NLS L + +N++ P L +L + L N IS P +
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLAN 215
Query: 475 SPFNIRRVHLS 485
+ N+ V L+
Sbjct: 216 TS-NLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 27/236 (11%)
Query: 132 LVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSN 191
L ++ ++N++ ++ A+L + L +T + + L + L L +
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72
Query: 192 NHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFL 251
N L+ ++L+ + + +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQ------------SIKTLDLTSTQIT 120
Query: 252 YHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDV 311
+L L L + L + P+ L L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180
Query: 312 SNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSN 367
+NK+ P+ LPNL+ +++ N + P + L + L+N
Sbjct: 181 DDNKISDISPLAS---LPNLIEVHLKNNQISDVSPLA-------NTSNLFIVTLTN 226
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 5e-04
Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 12/131 (9%)
Query: 451 CQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWM 510
C L +R+ SL N+ +++ L +
Sbjct: 5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ------------QHLQHLELRDL 52
Query: 511 NRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNH 570
L +LR L + +GL P + +L ++LS N L + +S +
Sbjct: 53 RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112
Query: 571 DLFDQDPQILY 581
+ + +
Sbjct: 113 NPLHCSCALRW 123
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 38.6 bits (88), Expect = 0.001
Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 6/179 (3%)
Query: 172 NISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKF 231
+ P + EL L++N S F L + ++
Sbjct: 19 GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNIS 291
+ + L + I K H L+ ++L ++ P E L L+L +
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNP 137
Query: 292 LFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFG 350
L + LR ++ + P + + ++ + ++ + F S +S G
Sbjct: 138 FNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK----VRDVQIKDLPHSEFKCSSENSEG 191
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 38.6 bits (88), Expect = 0.001
Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 11/179 (6%)
Query: 298 LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357
+P + L +++N+L + LP+L + +
Sbjct: 23 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL------VKLELKRNQLTGIEPNAFEG 76
Query: 358 FYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416
+ + ++ +K F L +LK LNL N +P + + ++L L ++ N
Sbjct: 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Query: 417 NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSS 475
+ N +L + PS ++R ++I DL + S +
Sbjct: 137 PFNCNCHLA-WFAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSENSEG 191
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 0.001
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 12/112 (10%)
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLG--- 495
+ L + QL + LDLS N + P+ ++ + + S N L+
Sbjct: 7 HKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL 64
Query: 496 ------DLSYNRLNS-NIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540
L NRL + P+L L L N L E +Q L
Sbjct: 65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 0.001
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 362 YLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN 421
L L++ L L + L+L N P L+ L+ + + +N N
Sbjct: 2 VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE-VLQASDNALEN 57
Query: 422 IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG 468
+ + ++ N + L +L+L N++
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 740 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.93 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.9 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.85 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.76 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.75 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.69 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.68 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.63 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.58 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.57 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.53 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.46 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.41 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.39 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.39 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.37 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.15 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.15 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.12 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.25 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.15 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.77 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.6 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.89 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.88 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=1.9e-30 Score=263.88 Aligned_cols=147 Identities=27% Similarity=0.458 Sum_probs=110.4
Q ss_pred CCcHHHHHHHHHHhhc---------CC-CCCCcc--ccceEecCC--CCceEEEECCCCCCCCCCCcccccccccccccc
Q 045323 7 GCLEQEGYALLKLKHD---------FF-NNHCCQ--WACVECNTT--TGKVISLDLDGTRKLGDGEGYLNASLFTSFQQL 72 (740)
Q Consensus 7 ~~~~~~~~~~~~~~~~---------~~-~~~~c~--~~~~~c~~~--~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L 72 (740)
=|.++|+.|+++||++ |. +.+||. |.||.|+.. .++|+.+||+++.+. |
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~--g--------------- 64 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP--K--------------- 64 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS--S---------------
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCC--C---------------
Confidence 4999999999999986 76 789995 999999864 348999999987661 1
Q ss_pred ceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccCCCCCEEECCC-CCCCCccChhhhcCCCCCCEEEccCCcccccccc
Q 045323 73 ELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSN-SYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPW 151 (740)
Q Consensus 73 ~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (740)
...+|+.++++++|++|+|++ |.+++.+|. .|+++++|++|+|++|++.+..+.
T Consensus 65 ------------------------~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~-~i~~L~~L~~L~Ls~N~l~~~~~~ 119 (313)
T d1ogqa_ 65 ------------------------PYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp ------------------------CEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCG
T ss_pred ------------------------CCCCChHHhcCcccccccccccccccccccc-ccccccccchhhhccccccccccc
Confidence 123556677777777777775 666666775 677777777777777777777777
Q ss_pred cCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccc
Q 045323 152 CLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQI 196 (740)
Q Consensus 152 ~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~ 196 (740)
.+..+.+|+++++++|.+.+.+|. .+.+++.++++++++|.+.+
T Consensus 120 ~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l~l~~n~l~~ 163 (313)
T d1ogqa_ 120 FLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISG 163 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEE
T ss_pred cccchhhhcccccccccccccCch-hhccCcccceeecccccccc
Confidence 777777777777777777666665 67777777777777776653
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=8.5e-29 Score=251.48 Aligned_cols=258 Identities=31% Similarity=0.550 Sum_probs=187.6
Q ss_pred CCeeecCCCccee--cCCcCCCCCCCCceEeCCC-cccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEE
Q 045323 384 LKRLNLDGNHFIG--DIPKTLSNCSALQGLYISD-NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460 (740)
Q Consensus 384 L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 460 (740)
++.|+++++.+.+ .+|..+..+++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+..+..+..+++|+.++
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~ 131 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence 4444444444433 2334444444444444443 344444444444444444444444444444444444444444444
Q ss_pred CCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCC
Q 045323 461 LSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540 (740)
Q Consensus 461 l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 540 (740)
+++|.+. +.+|..+..+++++.+++++|.+.+.+|..+..+..+
T Consensus 132 l~~N~~~------------------------------------~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l 175 (313)
T d1ogqa_ 132 FSYNALS------------------------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp CCSSEEE------------------------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred ccccccc------------------------------------ccCchhhccCcccceeecccccccccccccccccccc
Confidence 4444332 2456777888899999999999988888888777765
Q ss_pred -CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCc
Q 045323 541 -QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSM 619 (740)
Q Consensus 541 -~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 619 (740)
+.+++++|++.+..|..+..+ ..
T Consensus 176 ~~~l~~~~n~l~~~~~~~~~~l--------------------------------------------------------~~ 199 (313)
T d1ogqa_ 176 FTSMTISRNRLTGKIPPTFANL--------------------------------------------------------NL 199 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGC--------------------------------------------------------CC
T ss_pred cccccccccccccccccccccc--------------------------------------------------------cc
Confidence 889999998887666544332 24
Q ss_pred cEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCc
Q 045323 620 SGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFN 699 (740)
Q Consensus 620 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 699 (740)
..++++++...+.+|..+..+++++.+++++|.+++.+| .++.+++|+.|+|++|++++.+|+.+.++++|+.|+|++|
T Consensus 200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N 278 (313)
T d1ogqa_ 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence 468999999999999999999999999999999986655 5788999999999999999999999999999999999999
Q ss_pred ccccCCCCcccCCCCccccccccCCCCCCcCCCCCCC
Q 045323 700 NLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCN 736 (740)
Q Consensus 700 ~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~~~~~ 736 (740)
+++|.+|+ ++.+++|+.+++++|+.+|+.|| ++|.
T Consensus 279 ~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~pl-p~c~ 313 (313)
T d1ogqa_ 279 NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL-PACT 313 (313)
T ss_dssp EEEEECCC-STTGGGSCGGGTCSSSEEESTTS-SCCC
T ss_pred cccccCCC-cccCCCCCHHHhCCCccccCCCC-CCCC
Confidence 99999997 47899999999999999999886 6774
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.93 E-value=1.5e-24 Score=227.31 Aligned_cols=191 Identities=27% Similarity=0.353 Sum_probs=112.7
Q ss_pred hcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCccccc
Q 045323 450 FCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGE 529 (740)
Q Consensus 450 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 529 (740)
+..+++++.+++++|.+.+.. ....+++|++|++++|.++. + ..+..+++|+.|++++|.+++.
T Consensus 193 ~~~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~l~~--------------~-~~l~~l~~L~~L~l~~n~l~~~ 256 (384)
T d2omza2 193 LAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKD--------------I-GTLASLTNLTDLDLANNQISNL 256 (384)
T ss_dssp GGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCC--------------C-GGGGGCTTCSEEECCSSCCCCC
T ss_pred cccccccceeeccCCccCCCC-cccccCCCCEEECCCCCCCC--------------c-chhhcccccchhccccCccCCC
Confidence 344455555555555544322 22234455555555554431 1 2345566777777777776643
Q ss_pred CCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccc
Q 045323 530 MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLY 609 (740)
Q Consensus 530 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 609 (740)
. .+..+++|+.|++++|++.+..+
T Consensus 257 ~--~~~~~~~L~~L~l~~~~l~~~~~------------------------------------------------------ 280 (384)
T d2omza2 257 A--PLSGLTKLTELKLGANQISNISP------------------------------------------------------ 280 (384)
T ss_dssp G--GGTTCTTCSEEECCSSCCCCCGG------------------------------------------------------
T ss_pred C--cccccccCCEeeccCcccCCCCc------------------------------------------------------
Confidence 2 25566777777777776642211
Q ss_pred eeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCC
Q 045323 610 TYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELN 689 (740)
Q Consensus 610 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 689 (740)
+..++.++.++++.|.+.+ +..+..+++++.|++++|++++..+ +..+++|++|++++|++++ ++ .+..++
T Consensus 281 ---~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~ 351 (384)
T d2omza2 281 ---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLT 351 (384)
T ss_dssp ---GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCT
T ss_pred ---ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCC
Confidence 1123356666677776653 2246667777777777777775432 5667777777777777763 33 466777
Q ss_pred cCceeeccCcccccCCCCcccCCCCccccccccC
Q 045323 690 ALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGN 723 (740)
Q Consensus 690 ~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N 723 (740)
+|++|++++|++++.+| ++.+++|+.|++++|
T Consensus 352 ~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 77777777777776655 566777777777766
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.93 E-value=3.8e-24 Score=224.16 Aligned_cols=193 Identities=20% Similarity=0.326 Sum_probs=138.4
Q ss_pred cCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCC
Q 045323 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLN 503 (740)
Q Consensus 424 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 503 (740)
..+..+++++.+.+++|.+++..+ +..+++|++|++++|.++ .++.+..+++|+.+++++|.+++.
T Consensus 191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~----------- 256 (384)
T d2omza2 191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNL----------- 256 (384)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCC-----------
T ss_pred cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-CcchhhcccccchhccccCccCCC-----------
Confidence 344556666777777766665443 345567777777777665 334444566777777777766521
Q ss_pred CCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccc
Q 045323 504 SNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQL 583 (740)
Q Consensus 504 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l 583 (740)
+ .+..+++|++|+++++++.+.. .+..++.++.+++.+|.+.+. + .
T Consensus 257 ---~-~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~-~-~-------------------------- 302 (384)
T d2omza2 257 ---A-PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI-S-P-------------------------- 302 (384)
T ss_dssp ---G-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC-G-G--------------------------
T ss_pred ---C-cccccccCCEeeccCcccCCCC--ccccccccccccccccccccc-c-c--------------------------
Confidence 1 2667788999999888887433 367788889999988887531 1 1
Q ss_pred hhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccC
Q 045323 584 PQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSH 663 (740)
Q Consensus 584 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 663 (740)
+..+++++.|++++|++.+.. .+..+++|++|+|++|++++ ++ .|+.
T Consensus 303 -----------------------------~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~ 349 (384)
T d2omza2 303 -----------------------------ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLAN 349 (384)
T ss_dssp -----------------------------GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred -----------------------------cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcC
Confidence 123457888999999988543 37889999999999999984 33 5888
Q ss_pred CCCCCEEeCCCCccCccCCcccccCCcCceeeccCc
Q 045323 664 MKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFN 699 (740)
Q Consensus 664 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 699 (740)
+++|++|++++|++++..| +.++++|+.|+|++|
T Consensus 350 l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 9999999999999986544 788999999999988
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=5.3e-23 Score=207.56 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=55.8
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|...+..+..|..++.++.|++++|.+++..+..+..+++|++|+|++|+|+ .+|+++..+++|+.|+++
T Consensus 172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls 250 (305)
T d1xkua_ 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 250 (305)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECC
Confidence 3444444444444444445555555555555555555555555555555555555555555 344455555555555555
Q ss_pred CcccccCCCCcc------cCCCCccccccccCCCCC
Q 045323 698 FNNLSGKTPDRV------AQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 698 ~N~l~~~~~~~~------~~~~~l~~l~l~~Np~~c 727 (740)
+|+|+.+.+..| ..+.+|+.++++||||.+
T Consensus 251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~ 286 (305)
T d1xkua_ 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286 (305)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence 555554433332 223445555566665544
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.1e-24 Score=214.02 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=95.0
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
++|+.+++++|+++++.+..|..+++|++|+|++|+++...+..|..+++|+.+++++|++++..|..|..+++|+.|++
T Consensus 129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l 208 (284)
T d1ozna_ 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (284)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence 36677777777777566667777888888888888888778888888888888888888888888888888888888888
Q ss_pred cCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
++|++.+.+++.++.+++|+++++++|||.|+|++
T Consensus 209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~ 243 (284)
T d1ozna_ 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (284)
T ss_dssp CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cccccccccccccccccccCEEEecCCCCCCCccc
Confidence 88888888888888888888888888888888875
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=3.5e-23 Score=208.88 Aligned_cols=280 Identities=19% Similarity=0.201 Sum_probs=213.6
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
..++++-++.+++. +|..+. +++++|++++|+++...+.+|.++++|++|++++|.+....+..|..++.|++|+++
T Consensus 11 ~~~~~~C~~~~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 46778888877874 454443 679999999999887666678889999999999999987778889999999999999
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCc
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLR 517 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~ 517 (740)
+|+++.. |.. ..+.++.|++..|.+....+.. .....+..+....+.... ....+..+..+++|+
T Consensus 88 ~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-----------~~~~~~~~~~l~~L~ 153 (305)
T d1xkua_ 88 KNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMKKLS 153 (305)
T ss_dssp SSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCTTCC
T ss_pred CCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccc-----------cCCCccccccccccC
Confidence 9988854 332 3457888999988887544332 235566677777665321 123445677889999
Q ss_pred EEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccc
Q 045323 518 YLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHK 597 (740)
Q Consensus 518 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 597 (740)
.+++++|.+.. ++.. .+++|+.|++++|.+.+..+..+.
T Consensus 154 ~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~-------------------------------------- 192 (305)
T d1xkua_ 154 YIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLK-------------------------------------- 192 (305)
T ss_dssp EEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGT--------------------------------------
T ss_pred ccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhh--------------------------------------
Confidence 99999998874 4433 358999999999987755554333
Q ss_pred eeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045323 598 YLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677 (740)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l 677 (740)
.++.++.|++++|++.+..+..+.++++|++|+|++|+++ .+|.+|..+++|+.|+|++|+|
T Consensus 193 -----------------~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i 254 (305)
T d1xkua_ 193 -----------------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 254 (305)
T ss_dssp -----------------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred -----------------ccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCcc
Confidence 3348899999999999888999999999999999999999 6688999999999999999999
Q ss_pred CccCCcc------cccCCcCceeeccCcccc--cCCCCcccCCCC
Q 045323 678 NGKIPPR------LIELNALAVFSVAFNNLS--GKTPDRVAQFGT 714 (740)
Q Consensus 678 ~~~~~~~------l~~l~~L~~L~ls~N~l~--~~~~~~~~~~~~ 714 (740)
+...... +..+.+|+.|++++|++. ...|..|.-+..
T Consensus 255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~ 299 (305)
T d1xkua_ 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299 (305)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred CccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccccc
Confidence 9543333 345788999999999975 345555544433
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4.2e-23 Score=203.19 Aligned_cols=205 Identities=25% Similarity=0.259 Sum_probs=161.4
Q ss_pred CCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCc
Q 045323 453 LRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL 532 (740)
Q Consensus 453 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 532 (740)
...+.+++.+++.++. +|... ++++++|++++|+|++ ..+..|..+++|++|++++|+++.. +
T Consensus 9 ~~~~~~v~C~~~~L~~-iP~~l-p~~l~~L~Ls~N~i~~-------------l~~~~f~~l~~L~~L~L~~N~l~~l-~- 71 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLTA-LPPDL-PKDTTILHLSENLLYT-------------FSLATLMPYTRLTQLNLDRAELTKL-Q- 71 (266)
T ss_dssp STTCCEEECTTSCCSS-CCSCC-CTTCCEEECTTSCCSE-------------EEGGGGTTCTTCCEEECTTSCCCEE-E-
T ss_pred cCCCeEEEccCCCCCe-eCcCc-CcCCCEEECcCCcCCC-------------cCHHHhhcccccccccccccccccc-c-
Confidence 3445555666666553 23211 2456666666666542 2235678889999999999998843 3
Q ss_pred cccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceee
Q 045323 533 QLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYE 612 (740)
Q Consensus 533 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 612 (740)
.+..+++|+.|++++|++... +..+
T Consensus 72 ~~~~l~~L~~L~Ls~N~l~~~-~~~~------------------------------------------------------ 96 (266)
T d1p9ag_ 72 VDGTLPVLGTLDLSHNQLQSL-PLLG------------------------------------------------------ 96 (266)
T ss_dssp CCSCCTTCCEEECCSSCCSSC-CCCT------------------------------------------------------
T ss_pred ccccccccccccccccccccc-cccc------------------------------------------------------
Confidence 356789999999999988632 2222
Q ss_pred cccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCc
Q 045323 613 VQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALA 692 (740)
Q Consensus 613 ~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 692 (740)
..+++|+.|+++++.+.+..+..+..+.++++|++++|.++...+..+..+++|+.|++++|++++..++.+..+++|+
T Consensus 97 -~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~ 175 (266)
T d1p9ag_ 97 -QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (266)
T ss_dssp -TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred -ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccc
Confidence 2345899999999999877888889999999999999999988888899999999999999999988888899999999
Q ss_pred eeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 693 VFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 693 ~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
.|+|++|+|+. +|+.+..+++|+.|+|+||||.|+|.+
T Consensus 176 ~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~CdC~~ 213 (266)
T d1p9ag_ 176 TLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (266)
T ss_dssp EEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred eeecccCCCcc-cChhHCCCCCCCEEEecCCCCCCCcch
Confidence 99999999995 565567889999999999999999975
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.1e-22 Score=198.41 Aligned_cols=238 Identities=23% Similarity=0.283 Sum_probs=148.8
Q ss_pred CCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC-CCcCcCCchhhhcCCCCCCEEE
Q 045323 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP-NNRLEGPIPSAFCQLRHLEILD 460 (740)
Q Consensus 382 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~-~n~~~~~~~~~l~~l~~L~~L~ 460 (740)
+.+++|+|++|+++...+.+|.+++.|++|++++|.+....+..+..+..++.+.+. .+.++...+..|.++++|++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 345666666666665555566666667777777766666555666666666666554 3455555566667777777777
Q ss_pred CCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCC
Q 045323 461 LSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540 (740)
Q Consensus 461 l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 540 (740)
+++|.+.... +..+...++|+.+++++|.+++..+..|..+++|
T Consensus 112 l~~n~~~~~~------------------------------------~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L 155 (284)
T d1ozna_ 112 LDRCGLQELG------------------------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155 (284)
T ss_dssp CTTSCCCCCC------------------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCccccccc------------------------------------ccccchhcccchhhhccccccccChhHhccccch
Confidence 7776654222 2223445556666666666665555556666667
Q ss_pred CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCcc
Q 045323 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620 (740)
Q Consensus 541 ~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 620 (740)
+.|++++|.+.+..+..|.+ +++|+
T Consensus 156 ~~L~l~~N~l~~l~~~~f~~-------------------------------------------------------l~~L~ 180 (284)
T d1ozna_ 156 THLFLHGNRISSVPERAFRG-------------------------------------------------------LHSLD 180 (284)
T ss_dssp CEEECCSSCCCEECTTTTTT-------------------------------------------------------CTTCC
T ss_pred hhcccccCcccccchhhhcc-------------------------------------------------------ccccc
Confidence 77777766665433333322 23666
Q ss_pred EEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcc
Q 045323 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 621 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 700 (740)
.+++++|++.+..|..|..+++|++|++++|++++..+..|+.+++|+.|++++|++....+ ...-...++.+....++
T Consensus 181 ~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~ 259 (284)
T d1ozna_ 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSE 259 (284)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECC
T ss_pred hhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCc
Confidence 77777777776777777777778888888888777777777777788888888887764322 11112345666666677
Q ss_pred cccCCCCcccC
Q 045323 701 LSGKTPDRVAQ 711 (740)
Q Consensus 701 l~~~~~~~~~~ 711 (740)
+....|..+.+
T Consensus 260 ~~C~~p~~l~g 270 (284)
T d1ozna_ 260 VPCSLPQRLAG 270 (284)
T ss_dssp CBEEESGGGTT
T ss_pred eEeCCchHHcC
Confidence 76666654443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.5e-20 Score=183.15 Aligned_cols=199 Identities=23% Similarity=0.192 Sum_probs=127.3
Q ss_pred CCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcC
Q 045323 406 SALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLS 485 (740)
Q Consensus 406 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 485 (740)
..+.+++.+++.++ .+|..+. +.+++|+|++|.++...+.+|.++++|++|++++|+++ .++....+++|++|+++
T Consensus 10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLS 85 (266)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEEECC
T ss_pred CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccccccccccccccc
Confidence 45556677777777 4555443 46778888888887666677888888888888888776 33334446666666666
Q ss_pred CCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccc
Q 045323 486 KNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNY 565 (740)
Q Consensus 486 ~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~ 565 (740)
+|+++ ..+..+..+++|+.|++++|.+....+..+..+.+++.|++++|.+....+..+.
T Consensus 86 ~N~l~--------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~------ 145 (266)
T d1p9ag_ 86 HNQLQ--------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT------ 145 (266)
T ss_dssp SSCCS--------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT------
T ss_pred ccccc--------------ccccccccccccccccccccccceeeccccccccccccccccccccceecccccc------
Confidence 66654 2344556667777777777776655555666667777777777766533222221
Q ss_pred ccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcE
Q 045323 566 REDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHT 645 (740)
Q Consensus 566 ~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 645 (740)
.++.++.+++++|++++..+..|..+++|++
T Consensus 146 -------------------------------------------------~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~ 176 (266)
T d1p9ag_ 146 -------------------------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (266)
T ss_dssp -------------------------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred -------------------------------------------------ccccchhcccccccccccCccccccccccce
Confidence 2235666666666666555566666666777
Q ss_pred EECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 646 LNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 646 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus 177 L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp EECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred eecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 777777666 55555556666667777666655
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.76 E-value=5e-16 Score=159.44 Aligned_cols=78 Identities=28% Similarity=0.361 Sum_probs=51.6
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
.....++..+.+.+. + ..+++|++|+|++|+++ .+|.. +++|+.|+|++|+|+ .+|+. +++|+.|+++
T Consensus 265 ~~~~~~~~~~~~~~~-~---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~ 332 (353)
T d1jl5a_ 265 NLYYLNASSNEIRSL-C---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVE 332 (353)
T ss_dssp TCCEEECCSSCCSEE-C---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred hhcccccccCccccc-c---ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECc
Confidence 344556666665522 2 23577888888888887 45543 467888888888887 45543 4568888888
Q ss_pred CcccccCCCCc
Q 045323 698 FNNLSGKTPDR 708 (740)
Q Consensus 698 ~N~l~~~~~~~ 708 (740)
+|+++. +|+.
T Consensus 333 ~N~L~~-lp~~ 342 (353)
T d1jl5a_ 333 YNPLRE-FPDI 342 (353)
T ss_dssp SSCCSS-CCCC
T ss_pred CCcCCC-CCcc
Confidence 888774 4543
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.75 E-value=8.1e-16 Score=157.86 Aligned_cols=71 Identities=30% Similarity=0.404 Sum_probs=55.3
Q ss_pred cCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 615 PLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
.+++|++|++++|++. .+|. .+++|++|+|++|+++ .+|+. +++|++|++++|+++ .+|+... .|+.|
T Consensus 282 ~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~---~L~~L 349 (353)
T d1jl5a_ 282 LPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPE---SVEDL 349 (353)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCT---TCCEE
T ss_pred cCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccc---ccCee
Confidence 3578999999999998 6664 3689999999999999 55643 468999999999998 6676443 45555
Q ss_pred ecc
Q 045323 695 SVA 697 (740)
Q Consensus 695 ~ls 697 (740)
.+.
T Consensus 350 ~~~ 352 (353)
T d1jl5a_ 350 RMN 352 (353)
T ss_dssp ECC
T ss_pred ECc
Confidence 543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.2e-20 Score=202.21 Aligned_cols=87 Identities=20% Similarity=0.082 Sum_probs=47.1
Q ss_pred CCccEEEcccCcccccC----hhhhh-cCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCccCccCCcc---
Q 045323 617 HSMSGLDLSCNKLIGEI----PLQIG-ELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNNLNGKIPPR--- 684 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~----~~~l~-~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--- 684 (740)
++|++|++++|++.+.. ++.+. ..+.|++|+|++|++++. ++..+..+++|++|+|++|+++......
T Consensus 340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~ 419 (460)
T d1z7xw1 340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419 (460)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHH
Confidence 35666777776665332 22222 245567777777766642 3344455566777777777666322222
Q ss_pred -cc-cCCcCceeeccCccccc
Q 045323 685 -LI-ELNALAVFSVAFNNLSG 703 (740)
Q Consensus 685 -l~-~l~~L~~L~ls~N~l~~ 703 (740)
+. +...|+.|++++|.+..
T Consensus 420 ~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 420 SVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp HHTSTTCCCCEEECTTCCCCH
T ss_pred HHHhCCCccCEEECCCCCCCH
Confidence 21 12356666666666653
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=1.4e-17 Score=154.16 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=107.3
Q ss_pred CCccEEEcccCcccc-cChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 617 HSMSGLDLSCNKLIG-EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
++++.|++++|++++ ..+..|.++++|++|+|++|.++...+..|..+++|++|+|++|+|+...|..|..+++|+.|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 378999999999975 4466789999999999999999999999999999999999999999988888999999999999
Q ss_pred ccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 696 ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
|++|+|+++.++.|..+++|+++++++|||.|+|.+
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~ 144 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred cCCccccccCHHHhcCCcccccccccccccccccch
Confidence 999999999999999999999999999999999974
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=3.1e-17 Score=151.80 Aligned_cols=170 Identities=22% Similarity=0.239 Sum_probs=132.6
Q ss_pred CCCcccCCCCCCcEEecccCccccc-CCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccc
Q 045323 505 NIPDWMNRLPQLRYLILANNGLEGE-MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQL 583 (740)
Q Consensus 505 ~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l 583 (740)
.+|..+ .+++++|++++|+++.. .+..|..+++|+.|++++|.+....+..+..
T Consensus 22 ~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~----------------------- 76 (192)
T d1w8aa_ 22 EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------------------- 76 (192)
T ss_dssp SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------------------
T ss_pred ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-----------------------
Confidence 445433 26788999999999753 4566788999999999999987655544433
Q ss_pred hhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccC
Q 045323 584 PQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSH 663 (740)
Q Consensus 584 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 663 (740)
+++|+.|++++|++.+..+..|.++++|++|+|++|++++..++.|..
T Consensus 77 --------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~ 124 (192)
T d1w8aa_ 77 --------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp --------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred --------------------------------ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcC
Confidence 348999999999999888888999999999999999999999999999
Q ss_pred CCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCCCCCC
Q 045323 664 MKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSC 735 (740)
Q Consensus 664 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~~~~ 735 (740)
+++|++|+|++|++.... +...-...++.+.+..|.+....|. .+..++.+++..|.+.|+++=...|
T Consensus 125 l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~c~~p~---~l~~~~l~~L~~n~l~C~~~~~~g~ 192 (192)
T d1w8aa_ 125 LNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp CTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTCCCCCC---CC
T ss_pred Cccccccccccccccccc-chHHHhhhhhhhcccCCCeEeCCCh---hhcCCEeeecCHhhCcCCCCCCCCC
Confidence 999999999999998432 2222234577788889988877775 4566788899999999988754444
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=6.7e-17 Score=154.29 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=36.9
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|.+.+. ..+.++++|++|+|++|++++. + .++.+++|++|+|++|++++. + .+.++++|+.|+++
T Consensus 152 ~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 152 NLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT 225 (227)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred ccccccccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence 455555555554321 1245555555555555555532 1 245555555555555555532 2 24555555555554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.3e-19 Score=194.15 Aligned_cols=112 Identities=12% Similarity=0.020 Sum_probs=83.3
Q ss_pred CCCccEEEcccCcccccChhh----hhcCCCCcEEECcCCcCccc----CCcccc-CCCCCCEEeCCCCccCc----cCC
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQ----IGELSRIHTLNLSHNNLTGE----SPVTFS-HMKQVESLDLSYNNLNG----KIP 682 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~----l~~l~~L~~L~L~~N~l~~~----~~~~l~-~l~~L~~L~Ls~n~l~~----~~~ 682 (740)
.+.|+.++++++.+....... +...++|++|+|++|++++. ++..+. ..+.|++|+|++|+++. .++
T Consensus 311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 390 (460)
T d1z7xw1 311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 390 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence 357999999999987654443 45567999999999999854 333333 46789999999999984 245
Q ss_pred cccccCCcCceeeccCcccccCCCCc----cc-CCCCccccccccCCCCC
Q 045323 683 PRLIELNALAVFSVAFNNLSGKTPDR----VA-QFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 683 ~~l~~l~~L~~L~ls~N~l~~~~~~~----~~-~~~~l~~l~l~~Np~~c 727 (740)
+.+..+++|+.|+|++|+++...... +. .-..|+.+++.+|.+..
T Consensus 391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 66778899999999999986432222 11 22468999999998864
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=2.4e-16 Score=150.37 Aligned_cols=189 Identities=22% Similarity=0.312 Sum_probs=111.3
Q ss_pred cCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCE
Q 045323 379 FNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEI 458 (740)
Q Consensus 379 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 458 (740)
..+.+|+.|++.+|.+.+. ..+..+++|++|++++|.+.+.. .+..+++++.+++++|.++.. ..+.++++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~ 111 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (227)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccc
Confidence 3445555555555555432 22455555555555555554321 244555555555555544422 12444455555
Q ss_pred EECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCC
Q 045323 459 LDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLN 538 (740)
Q Consensus 459 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 538 (740)
++++++... + ...+...+.++.+.++++.+... ..+..++
T Consensus 112 l~l~~~~~~-----------------------~---------------~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~ 151 (227)
T d1h6ua2 112 LDLTSTQIT-----------------------D---------------VTPLAGLSNLQVLYLDLNQITNI--SPLAGLT 151 (227)
T ss_dssp EECTTSCCC-----------------------C---------------CGGGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred ccccccccc-----------------------c---------------cchhccccchhhhhchhhhhchh--hhhcccc
Confidence 555444333 1 12244456677777777766532 2355677
Q ss_pred CCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCC
Q 045323 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHS 618 (740)
Q Consensus 539 ~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (740)
+|+.|++++|.+.+.. .++.+++
T Consensus 152 ~L~~L~l~~n~~~~~~---------------------------------------------------------~l~~l~~ 174 (227)
T d1h6ua2 152 NLQYLSIGNAQVSDLT---------------------------------------------------------PLANLSK 174 (227)
T ss_dssp TCCEEECCSSCCCCCG---------------------------------------------------------GGTTCTT
T ss_pred ccccccccccccccch---------------------------------------------------------hhccccc
Confidence 7888888877664211 1223457
Q ss_pred ccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCC
Q 045323 619 MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674 (740)
Q Consensus 619 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~ 674 (740)
|+.|++++|++++ ++ .+.++++|++|+|++|++++..| ++.+++|+.|++++
T Consensus 175 L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 175 LTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226 (227)
T ss_dssp CCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred ceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence 8888888888874 33 37888999999999999885443 77889999998864
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.4e-16 Score=152.24 Aligned_cols=78 Identities=19% Similarity=0.063 Sum_probs=35.5
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEE-ECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTL-NLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L-~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
.++.+++++|++....+..+ ..++++++ ++++|+++...+..|.++++|+.|++++|+++...+..|.++++|+.+++
T Consensus 154 ~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 154 ESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232 (242)
T ss_dssp SCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred cceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence 34445555555543333222 22333332 34444555444444555555555555555555333334445555544444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.1e-15 Score=147.58 Aligned_cols=223 Identities=14% Similarity=0.096 Sum_probs=134.8
Q ss_pred ceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCc
Q 045323 409 QGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNM 488 (740)
Q Consensus 409 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 488 (740)
+.++.++..++ .+|..+. +++++|++++|.++...+.+|.++++|++|++++|.+...++
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~----------------- 70 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE----------------- 70 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEEC-----------------
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceee-----------------
Confidence 34555555555 3333322 356666666666664444556667777777776666542211
Q ss_pred ccCcCccccCCCcCCCCCCcccCCCCCCcEEeccc-CcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccccc
Q 045323 489 LQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILAN-NGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRE 567 (740)
Q Consensus 489 i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~ 567 (740)
+..|..+++++++.+.. |.+....+..+..+++|+.+++++|.+....+..+
T Consensus 71 ------------------~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~--------- 123 (242)
T d1xwdc1 71 ------------------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--------- 123 (242)
T ss_dssp ------------------SSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTT---------
T ss_pred ------------------ccccccccccccccccccccccccccccccccccccccccchhhhcccccccc---------
Confidence 12344455666665543 45554555566667777777777776542111100
Q ss_pred CCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcC-CCCcEE
Q 045323 568 DNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGEL-SRIHTL 646 (740)
Q Consensus 568 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l-~~L~~L 646 (740)
...++.+..+..+++.+....+..|.++ ..++.|
T Consensus 124 ---------------------------------------------~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L 158 (242)
T d1xwdc1 124 ---------------------------------------------IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 158 (242)
T ss_dssp ---------------------------------------------TCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred ---------------------------------------------cccccccccccccccccccccccccccccccceee
Confidence 0112344555556666665555566665 478888
Q ss_pred ECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccC
Q 045323 647 NLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGN 723 (740)
Q Consensus 647 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N 723 (740)
++++|+++...+..+.....++.+++++|+++...+..|..+++|+.|++++|+++..++..+..++.|+.+++.+.
T Consensus 159 ~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l 235 (242)
T d1xwdc1 159 WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235 (242)
T ss_dssp ECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred ecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence 88888888666665543333344467888888555567888888888888888888777777888888888777653
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=1.9e-15 Score=141.64 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=48.8
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+.++.+++++|.+.+ +..+..+++|+++++++|++++.. .++.+++|++|+|++|+++. +| .+..+++|++|+|
T Consensus 134 ~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L 207 (210)
T d1h6ta2 134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL 207 (210)
T ss_dssp TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred ccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEc
Confidence 456666677666652 234556677777777777776432 25667777777777777763 33 4667777777776
Q ss_pred cC
Q 045323 697 AF 698 (740)
Q Consensus 697 s~ 698 (740)
++
T Consensus 208 s~ 209 (210)
T d1h6ta2 208 FS 209 (210)
T ss_dssp EE
T ss_pred cC
Confidence 53
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=7.6e-15 Score=136.29 Aligned_cols=70 Identities=29% Similarity=0.495 Sum_probs=34.9
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCce
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAV 693 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 693 (740)
+|+.|++++|++. .++ .+..+++|+.|++++|++++.. .++++++|++|++++|++++ ++ .+..+++|+.
T Consensus 129 ~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~ 198 (199)
T d2omxa2 129 NLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLES 198 (199)
T ss_dssp TCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSE
T ss_pred hhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCc
Confidence 4555555555553 222 3455555555555555555322 24555555555555555553 22 3445555544
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=9.2e-15 Score=136.92 Aligned_cols=81 Identities=25% Similarity=0.330 Sum_probs=57.9
Q ss_pred CCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCE
Q 045323 107 MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEE 186 (740)
Q Consensus 107 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~ 186 (740)
+.+|++|++++|.+. .++ .++.+++|++|++++|++++.. .++.+++|++|++++|++++ ++ .+..+++|+.
T Consensus 45 L~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~--~l~~l~~L~~ 116 (210)
T d1h6ta2 45 LNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS--SLKDLKKLKS 116 (210)
T ss_dssp HHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG--GGTTCTTCCE
T ss_pred hcCccEEECcCCCCC-Cch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc--cccccccccc
Confidence 567778888888776 443 4777888888888888877543 25677888888888887764 44 3677777888
Q ss_pred EeccCCccc
Q 045323 187 LWLSNNHFQ 195 (740)
Q Consensus 187 L~l~~n~~~ 195 (740)
|++++|.+.
T Consensus 117 L~l~~~~~~ 125 (210)
T d1h6ta2 117 LSLEHNGIS 125 (210)
T ss_dssp EECTTSCCC
T ss_pred ccccccccc
Confidence 877777653
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=1.7e-14 Score=133.90 Aligned_cols=162 Identities=28% Similarity=0.344 Sum_probs=93.9
Q ss_pred cCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCC
Q 045323 106 LMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIE 185 (740)
Q Consensus 106 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~ 185 (740)
.+.++++|++++|.+. .+. +++.+++|++|++++|++++..+ ++++++|++|++++|.+.. ++ .+.++++|+
T Consensus 38 ~l~~l~~L~l~~~~i~-~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~--~l~~l~~L~ 109 (199)
T d2omxa2 38 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT--PLANLTNLT 109 (199)
T ss_dssp HHTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCS
T ss_pred HhcCCCEEECCCCCCC-Ccc--ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc--ccccccccc
Confidence 3567777777777775 443 46777777777777777765433 6777777777777776643 33 366777777
Q ss_pred EEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCC
Q 045323 186 ELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHL 265 (740)
Q Consensus 186 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 265 (740)
+|+++++.... ...+..+++|+.|++++|
T Consensus 110 ~L~l~~~~~~~---------------------------------------------------~~~~~~l~~L~~L~l~~n 138 (199)
T d2omxa2 110 GLTLFNNQITD---------------------------------------------------IDPLKNLTNLNRLELSSN 138 (199)
T ss_dssp EEECCSSCCCC---------------------------------------------------CGGGTTCTTCSEEECCSS
T ss_pred ccccccccccc---------------------------------------------------ccccchhhhhHHhhhhhh
Confidence 77777665431 112334455666666665
Q ss_pred CCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEE
Q 045323 266 NLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVL 334 (740)
Q Consensus 266 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L 334 (740)
.+. .++. +..++++++|++.+|.+.... .+.++++|++|++++|+++ .++. +. .+++|++|
T Consensus 139 ~l~-~~~~--l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~-~i~~-l~-~L~~L~~L 199 (199)
T d2omxa2 139 TIS-DISA--LSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS-DISV-LA-KLTNLESL 199 (199)
T ss_dssp CCC-CCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCSEE
T ss_pred hhc-cccc--ccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC-CCcc-cc-CCCCCCcC
Confidence 554 2222 235555666666555544321 2555666666666666665 3332 22 25555543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.2e-15 Score=150.32 Aligned_cols=184 Identities=21% Similarity=0.130 Sum_probs=105.2
Q ss_pred CCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCC-CCCCCCCccccCCCCCCC
Q 045323 107 MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFN-QLTENISSSPLMNLTYIE 185 (740)
Q Consensus 107 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~i~~~~l~~l~~L~ 185 (740)
...|++||+++|.++.......+.++++|++|++++|.+++..+..++.+++|++|++++| .+++.........+++|+
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~ 124 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence 4578888888887764433335778888888888888887777777888888888888886 343211111234577888
Q ss_pred EEeccCCc-ccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCC--CCCC-CChhhcCCCCCCEEE
Q 045323 186 ELWLSNNH-FQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHG--DSGI-FPKFLYHQHDLEYVD 261 (740)
Q Consensus 186 ~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~-~~~~l~~l~~L~~L~ 261 (740)
+|++++|. +++......+... .++|+.|+++++. ++.. +......+++|++|+
T Consensus 125 ~L~ls~c~~~~~~~~~~~~~~~-----------------------~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~ 181 (284)
T d2astb2 125 ELNLSWCFDFTEKHVQVAVAHV-----------------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181 (284)
T ss_dssp EEECCCCTTCCHHHHHHHHHHS-----------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred ccccccccccccccchhhhccc-----------------------ccccchhhhcccccccccccccccccccccccccc
Confidence 88888763 2211000001110 1245555554431 1111 222334566677777
Q ss_pred cCCCC-CCCCCChhHHhcCCCCCEEEccCCc-ccccCCCCCCCCCCCCEEEccCC
Q 045323 262 LSHLN-LTREFPNWLLEKNKKLKRLSLVNIS-LFGPFPLPIHCHKNLRVLDVSNN 314 (740)
Q Consensus 262 L~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~L~~L~l~~~ 314 (740)
+++|. +++.....+ ..+++|++|++++|. ++......+..+++|+.|++.++
T Consensus 182 L~~~~~itd~~~~~l-~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 182 LSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccCCCchhhhhh-cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 76653 444444443 456667777776653 33333344556666777776665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.9e-15 Score=131.46 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=101.5
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCC-cCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHN-NLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
...+.++++++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+.+.|..|..+++|+.|+
T Consensus 8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 34567899998887 67888999999999999876 59988888999999999999999999988889999999999999
Q ss_pred ccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 696 ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
|++|+++...++.+..+ +++.|+|++|||.|+|.+
T Consensus 87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~ 121 (156)
T d2ifga3 87 LSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCAL 121 (156)
T ss_dssp CCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGG
T ss_pred ccCCCCcccChhhhccc-cccccccCCCcccCCchH
Confidence 99999998888877655 799999999999999975
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.3e-15 Score=146.36 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=31.1
Q ss_pred CCCCCCEEEccCCccccc-ccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCC
Q 045323 131 ELVYLQEVNIDRNNLSGS-LPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNN 192 (740)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n 192 (740)
...+|++|++++|.++.. +...+..+++|++|++++|.+.+.... .+..+++|++|+++++
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c 105 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGC 105 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHH-HHhcCCCCcCcccccc
Confidence 344566666666555432 233345556666666665555443333 3445555555555553
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=1e-13 Score=116.72 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=85.5
Q ss_pred cEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCc
Q 045323 620 SGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFN 699 (740)
Q Consensus 620 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 699 (740)
+.||+++|+++ .++ .+..+++|++|++++|+++ .+|..|+.+++|+.|++++|.|+. +| .+..+++|+.|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 46889999987 444 4788899999999999998 566678889999999999999984 44 5888899999999999
Q ss_pred ccccCCC-CcccCCCCccccccccCCCCCCcCC
Q 045323 700 NLSGKTP-DRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 700 ~l~~~~~-~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
+++...+ ..+..+++|+.+++++||......+
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~ 108 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCcCccH
Confidence 9886643 4567788899999999988654433
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.4e-13 Score=120.54 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=83.3
Q ss_pred cCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHh
Q 045323 510 MNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQIL 589 (740)
Q Consensus 510 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l 589 (740)
+.+..++++|++++|+++. ++..+..+++|+.|++++|.+.. ++
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~---------------------------------- 57 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD---------------------------------- 57 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC----------------------------------
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC----------------------------------
Confidence 4466778888888888873 45555667788888888887652 11
Q ss_pred hhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCC-ccccCCCCCC
Q 045323 590 YTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESP-VTFSHMKQVE 668 (740)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~ 668 (740)
.+..+++|+.|++++|+++...+..+..+++|++|++++|+++.... ..+..+++|+
T Consensus 58 ----------------------~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~ 115 (162)
T d1a9na_ 58 ----------------------GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 115 (162)
T ss_dssp ----------------------CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred ----------------------CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccc
Confidence 12234577777777777775555555667777777777777764322 4566777777
Q ss_pred EEeCCCCccCccC---CcccccCCcCceee
Q 045323 669 SLDLSYNNLNGKI---PPRLIELNALAVFS 695 (740)
Q Consensus 669 ~L~Ls~n~l~~~~---~~~l~~l~~L~~L~ 695 (740)
.|++++|+++... +..+..+++|+.||
T Consensus 116 ~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 116 YLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred hhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 7777777776322 12355667777665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=1e-12 Score=110.52 Aligned_cols=78 Identities=32% Similarity=0.479 Sum_probs=50.6
Q ss_pred CEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEecc
Q 045323 111 KYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLS 190 (740)
Q Consensus 111 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~ 190 (740)
|+|++++|.++ .++ .++.+++|++|++++|+++. +|..++.+++|++|++++|++++ ++ .+..+++|++|+++
T Consensus 1 R~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~--~~~~l~~L~~L~l~ 73 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELLLC 73 (124)
T ss_dssp SEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECC
T ss_pred CEEEcCCCCCC-CCc--ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC--ccccccccCeEECC
Confidence 46677777765 444 36666777777777777763 45556667777777777777654 43 36666777777777
Q ss_pred CCccc
Q 045323 191 NNHFQ 195 (740)
Q Consensus 191 ~n~~~ 195 (740)
+|.+.
T Consensus 74 ~N~i~ 78 (124)
T d1dcea3 74 NNRLQ 78 (124)
T ss_dssp SSCCC
T ss_pred CCccC
Confidence 76654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.39 E-value=1.7e-14 Score=146.92 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=95.4
Q ss_pred CCCCCCcEEecccCcccccC----CccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhh
Q 045323 511 NRLPQLRYLILANNGLEGEM----PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQL 586 (740)
Q Consensus 511 ~~~~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L 586 (740)
...+.|+.+++++|.+.... ...+..++.|+.|++++|.+.......
T Consensus 155 ~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~----------------------------- 205 (344)
T d2ca6a1 155 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH----------------------------- 205 (344)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH-----------------------------
T ss_pred ccCcccceeecccccccccccccccchhhhhhhhccccccccccccccccc-----------------------------
Confidence 35678889999888876332 233566788999999888775210000
Q ss_pred HHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccccc----ChhhhhcCCCCcEEECcCCcCcccCCc---
Q 045323 587 QILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE----IPLQIGELSRIHTLNLSHNNLTGESPV--- 659 (740)
Q Consensus 587 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~--- 659 (740)
.....+...+.|+.|++++|.+... +...+..+++|++|+|++|.+++....
T Consensus 206 ---------------------~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~ 264 (344)
T d2ca6a1 206 ---------------------LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 264 (344)
T ss_dssp ---------------------HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred ---------------------chhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence 0001123456888899999987543 344567788999999999988864332
Q ss_pred -cccC--CCCCCEEeCCCCccCcc----CCcccc-cCCcCceeeccCcccccC
Q 045323 660 -TFSH--MKQVESLDLSYNNLNGK----IPPRLI-ELNALAVFSVAFNNLSGK 704 (740)
Q Consensus 660 -~l~~--l~~L~~L~Ls~n~l~~~----~~~~l~-~l~~L~~L~ls~N~l~~~ 704 (740)
.+.. .+.|++|++++|+|+.. +...+. +.+.|+.|++++|++...
T Consensus 265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence 2222 35789999999988742 333443 467899999999988643
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.8e-13 Score=120.11 Aligned_cols=111 Identities=17% Similarity=0.115 Sum_probs=93.3
Q ss_pred ccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCce
Q 045323 614 QPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAV 693 (740)
Q Consensus 614 ~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 693 (740)
.++..+++||+++|+++ .++..+..+++|+.|+|++|+++.. +.|+.+++|++|++++|+++...+..+..+++|+.
T Consensus 15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence 45668999999999998 4566678899999999999999954 35789999999999999999766666778999999
Q ss_pred eeccCcccccCCC-CcccCCCCccccccccCCCCC
Q 045323 694 FSVAFNNLSGKTP-DRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 694 L~ls~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~c 727 (740)
|++++|+++.... ..+..+++|+++++++||...
T Consensus 92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~ 126 (162)
T d1a9na_ 92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126 (162)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred ceeccccccccccccccccccccchhhcCCCcccc
Confidence 9999999976533 456788999999999999854
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.37 E-value=4.3e-14 Score=143.90 Aligned_cols=240 Identities=16% Similarity=0.192 Sum_probs=138.9
Q ss_pred CCCCCCeeecCCCcceec----CCcCCCCCCCCceEeCCCcccccC----------CCcCCCCCCCCCEEeCCCCcCcCC
Q 045323 380 NLTKLKRLNLDGNHFIGD----IPKTLSNCSALQGLYISDNNISGN----------IPTRLGNLSFLDAIMMPNNRLEGP 445 (740)
Q Consensus 380 ~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~i~~~----------~~~~~~~l~~L~~L~l~~n~~~~~ 445 (740)
....++.|++++|.+... +...+...++|+.++++++..... +...+..+++|++|++++|.++..
T Consensus 29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 108 (344)
T d2ca6a1 29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 108 (344)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence 344455555555544321 122334445555555554432210 112334556677777777766543
Q ss_pred ----chhhhcCCCCCCEEECCCCcCcccCC--------------CCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCC
Q 045323 446 ----IPSAFCQLRHLEILDLSRNNISGSLP--------------SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIP 507 (740)
Q Consensus 446 ----~~~~l~~l~~L~~L~l~~n~~~~~~~--------------~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~ 507 (740)
+...+..+++|++|++++|.+..... .....+.|+.+.+++|.++..... .+.
T Consensus 109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~---------~l~ 179 (344)
T d2ca6a1 109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK---------EWA 179 (344)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH---------HHH
T ss_pred cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccc---------ccc
Confidence 22334456777777777776531100 011245677777777766422110 123
Q ss_pred cccCCCCCCcEEecccCccccc-----CCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhcc
Q 045323 508 DWMNRLPQLRYLILANNGLEGE-----MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQ 582 (740)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 582 (740)
..+..++.|++|++++|.+... ....+..+++|+.|++++|.+......
T Consensus 180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~-------------------------- 233 (344)
T d2ca6a1 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-------------------------- 233 (344)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH--------------------------
T ss_pred chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc--------------------------
Confidence 3455678899999999988642 233466778999999999886521111
Q ss_pred chhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhh----hc--CCCCcEEECcCCcCccc
Q 045323 583 LPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQI----GE--LSRIHTLNLSHNNLTGE 656 (740)
Q Consensus 583 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l----~~--l~~L~~L~L~~N~l~~~ 656 (740)
.|. ..+..+++|++|++++|.+.+.....+ .. .+.|++|+|++|+++..
T Consensus 234 --~L~-----------------------~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~ 288 (344)
T d2ca6a1 234 --ALA-----------------------IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 288 (344)
T ss_dssp --HHH-----------------------HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred --ccc-----------------------ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChH
Confidence 110 012345688899999998875533333 32 36799999999998753
Q ss_pred C----Ccccc-CCCCCCEEeCCCCccCc
Q 045323 657 S----PVTFS-HMKQVESLDLSYNNLNG 679 (740)
Q Consensus 657 ~----~~~l~-~l~~L~~L~Ls~n~l~~ 679 (740)
. ...+. .+++|+.|+|++|++..
T Consensus 289 ~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 289 AVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 2 33332 46789999999999873
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.15 E-value=6.1e-13 Score=122.38 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=35.4
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCC-ccccCCCCCCEEeCCCCccCc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESP-VTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
.|+.|++++|+++. + ..+..+++|++|+|++|+++.... ..|+.+++|+.|+|++|++..
T Consensus 94 ~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 94 TLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred cccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence 46666666666652 2 235666666666666666663322 345666666666666666653
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.15 E-value=8.3e-13 Score=121.47 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=75.3
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCC-cccccCCcCcee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIP-PRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L 694 (740)
+++|+.|++++|.+. .+|..+..+++|++|++++|+++.. ..+..+++|+.|++++|+++.... ..+..+++|+.|
T Consensus 69 l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T d1m9la_ 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CccccChhhcccccc-ccccccccccccccccccccccccc--ccccccccccccccccchhccccccccccCCCcccee
Confidence 347888888888876 4555555567899999999998843 346788899999999999884322 467888999999
Q ss_pred eccCcccccCCCCc----------ccCCCCccccc
Q 045323 695 SVAFNNLSGKTPDR----------VAQFGTFEEDS 719 (740)
Q Consensus 695 ~ls~N~l~~~~~~~----------~~~~~~l~~l~ 719 (740)
++++|++....+.. +..+++|+.||
T Consensus 146 ~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 99999887665543 34567787776
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.7e-10 Score=101.16 Aligned_cols=60 Identities=28% Similarity=0.218 Sum_probs=28.7
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
+|+.|++++|++..+.+..|..+++|++|+|++|+++...+..|... +|+.|+|++|++.
T Consensus 57 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~ 116 (156)
T d2ifga3 57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116 (156)
T ss_dssp CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred ccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence 44444444444444444445555555555555555553333333322 3555555555543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.9e-08 Score=86.37 Aligned_cols=87 Identities=21% Similarity=0.179 Sum_probs=57.9
Q ss_pred ChhhhhcCCCCcEEECcCCcCcccC--CccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCc--
Q 045323 633 IPLQIGELSRIHTLNLSHNNLTGES--PVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDR-- 708 (740)
Q Consensus 633 ~~~~l~~l~~L~~L~L~~N~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~-- 708 (740)
++..+..+++|++|+|++|+++... +..+..+++|+.|+|++|.|+...+-.+....+|+.|++++|+++....+.
T Consensus 57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~ 136 (162)
T d1koha1 57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136 (162)
T ss_dssp HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence 3444556788888888888887543 344566788888888888887443323334456788888888887654432
Q ss_pred -----ccCCCCccccc
Q 045323 709 -----VAQFGTFEEDS 719 (740)
Q Consensus 709 -----~~~~~~l~~l~ 719 (740)
+..+++|+.||
T Consensus 137 y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 137 YISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHTTSTTCCEET
T ss_pred HHHHHHHHCCCCCEEC
Confidence 45567777765
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=4.8e-08 Score=85.76 Aligned_cols=106 Identities=19% Similarity=0.102 Sum_probs=75.9
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccC--CcccccCCcCceee
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI--PPRLIELNALAVFS 695 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~ 695 (740)
..+.||+++.+.. + .+..+..+..++..++... .++..+..+++|++|+|++|+|+... +..+..+++|+.|+
T Consensus 23 ~~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~ 97 (162)
T d1koha1 23 SQQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97 (162)
T ss_dssp SSCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred hhCeeecccCCCC---c-hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence 4566777765532 2 2444555555555555443 44555567899999999999999542 45677899999999
Q ss_pred ccCcccccCCCCcccCCCCccccccccCCCCCC
Q 045323 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCG 728 (740)
Q Consensus 696 ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~ 728 (740)
+++|.++...+-.+.....++.+++.|||..+.
T Consensus 98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~ 130 (162)
T d1koha1 98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDT 130 (162)
T ss_dssp CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred cccCccccchhhhhhhccccceeecCCCCcCcC
Confidence 999999977664444556789999999999764
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.77 E-value=2.8e-06 Score=74.55 Aligned_cols=109 Identities=7% Similarity=0.031 Sum_probs=75.9
Q ss_pred cCCCccEEEcccC-ccccc----ChhhhhcCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCccCcc----C
Q 045323 615 PLHSMSGLDLSCN-KLIGE----IPLQIGELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNNLNGK----I 681 (740)
Q Consensus 615 ~~~~L~~L~ls~n-~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~ 681 (740)
+.+.|++|+++++ .+... +...+...+.|++|+|++|.++.. +...+...+.|++|+|++|.++.. +
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4568999999875 45432 234566678899999999988753 334556678899999999998842 3
Q ss_pred CcccccCCcCceeeccCcccccCC-------CCcccCCCCccccccccC
Q 045323 682 PPRLIELNALAVFSVAFNNLSGKT-------PDRVAQFGTFEEDSYEGN 723 (740)
Q Consensus 682 ~~~l~~l~~L~~L~ls~N~l~~~~-------~~~~~~~~~l~~l~l~~N 723 (740)
...+...+.|+.|++++|.+.... .+.+..-++|+.++++.+
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 345666788999999988765442 222333477888887664
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.60 E-value=1.4e-05 Score=69.84 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=44.7
Q ss_pred CccEEEcccCccccc----ChhhhhcCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCccCcc-------CC
Q 045323 618 SMSGLDLSCNKLIGE----IPLQIGELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNNLNGK-------IP 682 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~-------~~ 682 (740)
.|+.|++++|.+... +.+.+...+.|++|+|++|.++.. +..++...++|++|++++|.+... +.
T Consensus 45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~ 124 (167)
T d1pgva_ 45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 124 (167)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH
Confidence 444455555444321 223344456666666666666542 233455556677777776654421 33
Q ss_pred cccccCCcCceeeccCccc
Q 045323 683 PRLIELNALAVFSVAFNNL 701 (740)
Q Consensus 683 ~~l~~l~~L~~L~ls~N~l 701 (740)
..+...+.|+.|+++.+..
T Consensus 125 ~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 125 MAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCccEeeCcCCCc
Confidence 4455566777777766543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.89 E-value=9.5e-05 Score=64.40 Aligned_cols=111 Identities=9% Similarity=0.075 Sum_probs=71.9
Q ss_pred cCCCccEEEcccC-ccccc----ChhhhhcCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCccCcc----C
Q 045323 615 PLHSMSGLDLSCN-KLIGE----IPLQIGELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNNLNGK----I 681 (740)
Q Consensus 615 ~~~~L~~L~ls~n-~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~ 681 (740)
..+.|++|+++++ .+... +...+...+.|++|+|++|.++.. +...+...++++.+++++|.+... +
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l 94 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 94 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence 4468888888873 45432 234455678888888888887753 334556678888888888888632 3
Q ss_pred CcccccCCcCceeec--cCccccc----CCCCcccCCCCccccccccCCC
Q 045323 682 PPRLIELNALAVFSV--AFNNLSG----KTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 682 ~~~l~~l~~L~~L~l--s~N~l~~----~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
...+...++|+.++| ++|++.. .+.+.+...++|+.+++..+..
T Consensus 95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 356666778876544 4566633 2233344557788888776643
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.88 E-value=0.00012 Score=63.75 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=23.0
Q ss_pred CCCCCCcEEeccc-Cccccc----CCccccCCCCCCEEEccCCcCc
Q 045323 511 NRLPQLRYLILAN-NGLEGE----MPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 511 ~~~~~L~~L~ls~-n~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
.+.++|++|++++ +.++.. +..++...++|+.|++++|.+.
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~ 59 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 59 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence 3456677777765 345422 1223445666777777766654
|