Citrus Sinensis ID: 045327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
KHFFTKALPAKGMGSNIEENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMVLNKDKTDEMKMKMKIVERRKCLMRSSFGNMITSLKIVGHRKRES
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEcccccEEEEEEccccccEEEccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHccccccHHHHHHHHHHHHcHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHccccHHHHccccccHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHccccccccc
Coil and Loop (DISEMBL)
khfftkalpakgmgsnieeNAAHQRKYkgirrrkwgkwvseirvpgsqerlwlgsyatpeaAAMAHDVAFYClrrprsldglnfpsmlpasvvhaelspkSVQKAAsdagmgvdaqmVLNKDKTDEMKMKMKIVERRKCLMRSSFGNMITSLKIVGHRKRES
Flexible Loop (DISEMBL)
khfftkalpakgmgsnieenaahqrkykgirrrkwgkwvseirvpgsqerlWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSMLPASVVHAELSPKSVQKAasdagmgvdaqmvlnkdktdemkMKMKIVERrkclmrssfgnmitslkivghrkres
Low Complexity Region (SEG)
KHFFTKALPAKGMGSNIEENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMVLNKDKTDEmkmkmkIVERRKCLMRSSFGNMITSLKIVGHRKRES
Disordered region (IsUnstruct)
**************************YKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSML********************************************IVERRKCLMRSSFGNMITSLKIV*******
Disordered Region (DISOPRED)
*****************************IRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSM***************************************************************************
Disordered Region (DISEMBL)
KHFFTKALPAKGMGSNIEENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSMLPASVVHAEL************GMGVDAQMVLNKDKTDEMKMKMKIVERRKCLMRSSFGNMITSLKI********
Disordered Region (DISPRO)
**********************HQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSMLPASVVHAELSPKSVQKAASDAGMGV*************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KHFFTKALPAKGMGSNIEENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMVLNKDKTDEMKMKMKIVERRKCLMRSSFGNMITSLKIVGHRKRES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9C9I8	143	Ethylene-responsive trans	yes	no	0.561	0.636	0.712	7e-34
O80542	144	Ethylene-responsive trans	no	no	0.617	0.694	0.633	2e-33
Q9S7L5	195	Ethylene-responsive trans	no	no	0.530	0.441	0.556	3e-22
Q9SNE1	153	Ethylene-responsive trans	no	no	0.555	0.588	0.516	4e-21
Q9FH94	184	Ethylene-responsive trans	no	no	0.555	0.489	0.537	7e-21
Q84QC2	185	Ethylene-responsive trans	no	no	0.530	0.464	0.522	2e-19
O22174	176	Ethylene-responsive trans	no	no	0.537	0.494	0.505	7e-19
Q8W3M3	150	Ethylene-responsive trans	no	no	0.660	0.713	0.403	6e-18
Q9SFE4	230	Ethylene-responsive trans	no	no	0.487	0.343	0.489	8e-18
Q9C591	216	Ethylene-responsive trans	no	no	0.493	0.370	0.5	4e-17

>sp|Q9C9I8|ERF20_ARATH Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1

 Score =  142 bits (359), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 78/94 (82%), Gaps = 3/94 (3%)

Query: 24  QRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLD--G 81
           Q KYKGIRRRKWGKWVSEIRVPG+++RLWLGS++T E AA+AHDVAFYCL RP SLD   
Sbjct: 11  QSKYKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCLHRPSSLDDES 70

Query: 82  LNFPSMLPASVVHAELSPKSVQKAASDAGMGVDA 115
            NFP +L  S+  + +SPKS+QKAASDAGM VDA
Sbjct: 71  FNFPHLLTTSLA-SNISPKSIQKAASDAGMAVDA 103

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|O80542|ERF19_ARATH Ethylene-responsive transcription factor ERF019 OS=Arabidopsis thaliana GN=ERF019 PE=2 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 82/101 (81%), Gaps = 1/101 (0%)

Query: 18  EENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPR 77
           E     Q KYKGIRRRKWGKWVSEIRVPG+++RLWLGS++T E AA+AHDVAF+CL +P 
Sbjct: 5   ESTGESQSKYKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCLHQPD 64

Query: 78  SLDGLNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMV 118
           SL+ LNFP +L  S+V +  SP+S+Q+AAS+AGM +DA +V
Sbjct: 65  SLESLNFPHLLNPSLV-SRTSPRSIQQAASNAGMAIDAGIV 104

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7L5|ERF18_ARATH Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 62/88 (70%), Gaps = 2/88 (2%)

Query: 20  NAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSL 79
           N A Q KYKG+R+RKWGKWVSEIR+P S+ER+WLGSY TPE AA A D A +CLR   + 
Sbjct: 14  NTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDA- 72

Query: 80  DGLNFPSMLPASVVHAELSPKSVQKAAS 107
              NFP+  P+  V   L+P  +Q+AA+
Sbjct: 73  -NFNFPNNPPSISVEKSLTPPEIQEAAA 99

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNE1|ERF11_ARATH Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1

 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 3/93 (3%)

Query: 23  HQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGL 82
            +R +KGIR RKWGKWV+EIR P  + RLWLGSY+TPEAAA A+D A + LR P +   L
Sbjct: 17  RERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTAT--L 74

Query: 83  NFPSMLPASVVHAELSPKSVQKAASDAGMGVDA 115
           NFP +LP +    ++S  +++K A++ G  VDA
Sbjct: 75  NFPELLPCTSAE-DMSAATIRKKATEVGAQVDA 106

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH94|ERF10_ARATH Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 24  QRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLN 83
            R YKGIR RKWGKWV+EIR P  + RLWLGSY+TPEAAA A+D A + LR P +   LN
Sbjct: 18  DRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTAR--LN 75

Query: 84  FPSMLPASVVHAE-LSPKSVQKAASDAGMGVDA 115
           FP +LP      E +S  +++K A++ G  VDA
Sbjct: 76  FPELLPGEKFSDEDMSAATIRKKATEVGAQVDA 108

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84QC2|ERF17_ARATH Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 20  NAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSL 79
           +++ Q KYKG+R+RKWGKWVSEIR+P S+ER+WLGSY TPE AA A D A YCLR   + 
Sbjct: 5   SSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAK 64

Query: 80  DGLNFPSMLPASVVHAELSPKSVQKAAS 107
              NFP   P       LS   +++AA+
Sbjct: 65  --FNFPDNPPVISGGRNLSRSEIREAAA 90

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O22174|ERF08_ARATH Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 61/95 (64%), Gaps = 8/95 (8%)

Query: 27  YKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPS 86
           YKGIR RKWGKWV+EIR P  + R+WLGSYATPEAAA A+D A + LR P +   LNFP 
Sbjct: 28  YKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSAR--LNFPE 85

Query: 87  MLPASVVH------AELSPKSVQKAASDAGMGVDA 115
           +L    V        +LS   +++ A++ G  VDA
Sbjct: 86  LLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDA 120

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3M3|RAP29_ARATH Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 7/114 (6%)

Query: 21  AAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLD 80
           ++++++YKGIR RKWGKWV+EIR P  + R+WLGSY T  AAA A+D A + LR P +  
Sbjct: 30  SSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSA-- 87

Query: 81  GLNFPSML-----PASVVHAELSPKSVQKAASDAGMGVDAQMVLNKDKTDEMKM 129
            LNFP  +         +  ++SP  ++K A++ G  VDA++ L     + + M
Sbjct: 88  RLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDAELRLENRMVENLDM 141

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFE4|ERF12_ARATH Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 15/94 (15%)

Query: 27  YKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPS 86
           YKG+R R WG WVSEIR P  + R+WLGSY+T EAAA A+DVA  CL+ P++   LNFP+
Sbjct: 50  YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQA--NLNFPT 107

Query: 87  MLPASVVH----------AELSPKSVQKAASDAG 110
              +S  H            LSPKS+Q+ A+ A 
Sbjct: 108 ---SSSSHHLLDNLLDENTLLSPKSIQRVAAQAA 138

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C591|ERF16_ARATH Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 26  KYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFP 85
           KY G+R+RKWGKWV+EIR+P S++R+WLGS+ + E AA A D A YCLR P +    NFP
Sbjct: 6   KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGAR--FNFP 63

Query: 86  SMLPASVVHAELSPKSVQKAAS 107
              P       L+P+ +Q  AS
Sbjct: 64  DNPPEIPGGRSLTPQQIQVVAS 85

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
224146274	185	AP2/ERF domain-containing transcription	0.666	0.583	0.715	5e-40
224135765	168	AP2/ERF domain-containing transcription	0.666	0.642	0.678	2e-38
255574253	166	Transcriptional factor TINY, putative [R	0.598	0.584	0.735	8e-36
449442118	148	PREDICTED: ethylene-responsive transcrip	0.592	0.648	0.66	2e-33
357481319	162	Ethylene-responsive transcription factor	0.617	0.617	0.640	2e-33
297838991	147	hypothetical protein ARALYDRAFT_476281 [	0.604	0.666	0.683	5e-33
15217518	143	ethylene-responsive transcription factor	0.561	0.636	0.712	4e-32
15219954	144	ethylene-responsive transcription factor	0.617	0.694	0.633	1e-31
297850736	147	hypothetical protein ARALYDRAFT_889793 [	0.580	0.639	0.663	1e-31
359495291	162	PREDICTED: ethylene-responsive transcrip	0.623	0.623	0.656	4e-29

>gi|224146274|ref|XP_002325945.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372126|gb|ABQ62994.1| RAP2-like protein [Populus trichocarpa] gi|222862820|gb|EEF00327.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 94/109 (86%), Gaps = 1/109 (0%)

Query: 21  AAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLD 80
           +A QRK+KG RRRKWGKWVSEIR+PG QERLWLGSY+TPEAAA+AHD+A YCLR P SL+
Sbjct: 23  SASQRKFKGARRRKWGKWVSEIRIPGKQERLWLGSYSTPEAAAVAHDIASYCLRGPSSLE 82

Query: 81  GLNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMVLNKDKTDEMKM 129
            LNFP MLPAS V  ++SPKS+QKAASDAGM +DAQM+LN+   +E+K+
Sbjct: 83  SLNFPLMLPAS-VREDMSPKSIQKAASDAGMAIDAQMILNRSLQNEVKV 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135765|ref|XP_002327298.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372124|gb|ABQ62993.1| RAP2-like protein [Populus trichocarpa] gi|222835668|gb|EEE74103.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 94/109 (86%), Gaps = 1/109 (0%)

Query: 21  AAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLD 80
           +A ++K+KG+RRRKWGKWVSEIR+PG Q+RLWLGSY+TPEAAA+AHD+A YCLR P S++
Sbjct: 16  SAARKKFKGVRRRKWGKWVSEIRIPGKQDRLWLGSYSTPEAAAVAHDIASYCLRGPSSIE 75

Query: 81  GLNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMVLNKDKTDEMKM 129
            LNFP MLPAS V  ++SPKS+QKAASDAGM +DAQM+LN+   +E+K 
Sbjct: 76  SLNFPLMLPAS-VREDMSPKSIQKAASDAGMAIDAQMILNRVPENEVKF 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574253|ref|XP_002528041.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223532571|gb|EEF34359.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 89/102 (87%), Gaps = 5/102 (4%)

Query: 21  AAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLD 80
           +  Q+KYKG+RRRKWGKWVSEIRVPG+QERLWLGSY+T EAAA+AHDVA YCL   R+ D
Sbjct: 9   STEQKKYKGVRRRKWGKWVSEIRVPGTQERLWLGSYSTAEAAAVAHDVASYCL---RAGD 65

Query: 81  G-LNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMVLNK 121
           G LNFP MLPAS V A++SPKS+QK+ASDAGM +DAQM+LN+
Sbjct: 66  GRLNFPLMLPAS-VKADMSPKSIQKSASDAGMAIDAQMILNR 106

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442118|ref|XP_004138829.1| PREDICTED: ethylene-responsive transcription factor ERF019-like [Cucumis sativus] gi|449490258|ref|XP_004158553.1| PREDICTED: ethylene-responsive transcription factor ERF019-like [Cucumis sativus]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 85/100 (85%), Gaps = 4/100 (4%)

Query: 25  RKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNF 84
           +K+KG+R+RKWGKWVSEIR+PGSQ+RLWLGSY++PEAAA+AHDVA+YCLRRP +LD LNF
Sbjct: 12  KKFKGVRQRKWGKWVSEIRIPGSQDRLWLGSYSSPEAAAVAHDVAYYCLRRPSNLDHLNF 71

Query: 85  PSM-LPAS---VVHAELSPKSVQKAASDAGMGVDAQMVLN 120
           P M LP +   ++  ++SP S+Q+AASDA M VDAQ + N
Sbjct: 72  PPMVLPLTNHLLIRDDMSPGSIQRAASDAAMAVDAQYICN 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481319|ref|XP_003610945.1| Ethylene-responsive transcription factor ERF019 [Medicago truncatula] gi|355512280|gb|AES93903.1| Ethylene-responsive transcription factor ERF019 [Medicago truncatula]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 83/103 (80%), Gaps = 3/103 (2%)

Query: 25  RKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNF 84
           +K+KG+RRRKWGKWVSEIRVPG+QERLWLG+YATPEAAA+AHDVAFYCL+RP +LD LNF
Sbjct: 16  KKFKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAFYCLKRPSTLDKLNF 75

Query: 85  PSMLPASVVHAE---LSPKSVQKAASDAGMGVDAQMVLNKDKT 124
           P +L +  +      +SP+SVQK ASD  M VDA+ + ++  T
Sbjct: 76  PDILSSYCIQQRDNLMSPRSVQKVASDVAMDVDARNIASQATT 118

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838991|ref|XP_002887377.1| hypothetical protein ARALYDRAFT_476281 [Arabidopsis lyrata subsp. lyrata] gi|297333218|gb|EFH63636.1| hypothetical protein ARALYDRAFT_476281 [Arabidopsis lyrata subsp. lyrata]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 80/101 (79%), Gaps = 3/101 (2%)

Query: 24  QRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLD--G 81
           Q KYKGIRRRKWGKWVSEIRVPG+++RLWLGS++T E AA+AHDVAFYCL R  SLD   
Sbjct: 10  QSKYKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCLHRLSSLDDEA 69

Query: 82  LNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMVLNKD 122
            NFP +LP S+  +  SPKS+QKAASDAGM VDA   +N D
Sbjct: 70  FNFPRLLPTSLA-SNTSPKSIQKAASDAGMAVDAGFNINND 109

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217518|ref|NP_177307.1| ethylene-responsive transcription factor ERF020 [Arabidopsis thaliana] gi|75262236|sp|Q9C9I8.1|ERF20_ARATH RecName: Full=Ethylene-responsive transcription factor ERF020 gi|12323733|gb|AAG51829.1|AC016163_18 hypothetical protein; 37461-37030 [Arabidopsis thaliana] gi|38638682|gb|AAR25635.1| At1g71520 [Arabidopsis thaliana] gi|48310329|gb|AAT41799.1| At1g71520 [Arabidopsis thaliana] gi|332197088|gb|AEE35209.1| ethylene-responsive transcription factor ERF020 [Arabidopsis thaliana]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 78/94 (82%), Gaps = 3/94 (3%)

Query: 24  QRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLD--G 81
           Q KYKGIRRRKWGKWVSEIRVPG+++RLWLGS++T E AA+AHDVAFYCL RP SLD   
Sbjct: 11  QSKYKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCLHRPSSLDDES 70

Query: 82  LNFPSMLPASVVHAELSPKSVQKAASDAGMGVDA 115
            NFP +L  S+  + +SPKS+QKAASDAGM VDA
Sbjct: 71  FNFPHLLTTSLA-SNISPKSIQKAASDAGMAVDA 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219954|ref|NP_173695.1| ethylene-responsive transcription factor ERF019 [Arabidopsis thaliana] gi|75223203|sp|O80542.1|ERF19_ARATH RecName: Full=Ethylene-responsive transcription factor ERF019 gi|13272471|gb|AAK17174.1|AF325106_1 hypothetical protein [Arabidopsis thaliana] gi|3287677|gb|AAC25505.1| Contains similarity to transcription factor (TINY) isolog T02O04.22 gb|2062174 from A. thaliana BAC gb|AC001645 [Arabidopsis thaliana] gi|21555003|gb|AAM63751.1| TINY-like transcription factor [Arabidopsis thaliana] gi|88900392|gb|ABD57508.1| At1g22810 [Arabidopsis thaliana] gi|332192170|gb|AEE30291.1| ethylene-responsive transcription factor ERF019 [Arabidopsis thaliana]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 82/101 (81%), Gaps = 1/101 (0%)

Query: 18  EENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPR 77
           E     Q KYKGIRRRKWGKWVSEIRVPG+++RLWLGS++T E AA+AHDVAF+CL +P 
Sbjct: 5   ESTGESQSKYKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCLHQPD 64

Query: 78  SLDGLNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMV 118
           SL+ LNFP +L  S+V +  SP+S+Q+AAS+AGM +DA +V
Sbjct: 65  SLESLNFPHLLNPSLV-SRTSPRSIQQAASNAGMAIDAGIV 104

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850736|ref|XP_002893249.1| hypothetical protein ARALYDRAFT_889793 [Arabidopsis lyrata subsp. lyrata] gi|297339091|gb|EFH69508.1| hypothetical protein ARALYDRAFT_889793 [Arabidopsis lyrata subsp. lyrata]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 82/95 (86%), Gaps = 1/95 (1%)

Query: 24  QRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLN 83
           Q KYKGIRRRKWGKWVSEIRVPG+++RLWLGS++T E AA+AHDVAF+CL +P SL+ LN
Sbjct: 10  QSKYKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCLHQPDSLESLN 69

Query: 84  FPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMV 118
           FP +L  S+V ++ SP+S+Q+AAS+AGM +DA +V
Sbjct: 70  FPHLLNPSIV-SKTSPRSIQQAASNAGMAIDAGIV 103

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495291|ref|XP_002276994.2| PREDICTED: ethylene-responsive transcription factor ERF020-like [Vitis vinifera]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 24  QRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLN 83
           ++K++G+R+RKWGKWVSEIRVPG+Q+RLWLGSYAT EAAA+AHD+A YCLR   SLDGLN
Sbjct: 15  KKKFRGVRQRKWGKWVSEIRVPGTQDRLWLGSYATAEAAAVAHDIASYCLRGGTSLDGLN 74

Query: 84  FPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMVLNKDKTD 125
           FP ++ +S V  +LSP+SVQKAASDAG+ +DAQ  + K   D
Sbjct: 75  FPHVI-SSKVRTDLSPRSVQKAASDAGLAIDAQFAIQKSSED 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2825359	143	AT1G71520 [Arabidopsis thalian	0.561	0.636	0.712	4.7e-32
TAIR|locus:2199711	144	AT1G22810 [Arabidopsis thalian	0.617	0.694	0.633	2e-31
TAIR|locus:2027171	195	ORA47 [Arabidopsis thaliana (t	0.543	0.451	0.544	1.1e-21
TAIR|locus:2074765	153	CEJ1 "cooperatively regulated	0.549	0.581	0.521	3e-21
TAIR|locus:2155498	184	DEAR2 "DREB and EAR motif prot	0.549	0.483	0.543	3.9e-21
TAIR|locus:2202200	185	AT1G19210 [Arabidopsis thalian	0.530	0.464	0.522	1.2e-19
TAIR|locus:2204730	244	AT1G77640 [Arabidopsis thalian	0.611	0.405	0.439	2.5e-19
TAIR|locus:2058641	176	DEAR3 "DREB and EAR motif prot	0.660	0.607	0.452	4e-19
TAIR|locus:2194819	211	AT1G44830 [Arabidopsis thalian	0.574	0.440	0.446	1.1e-18
TAIR|locus:2201103	230	DREB26 "dehydration response e	0.512	0.360	0.489	2.2e-18

TAIR|locus:2825359 AT1G71520 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 67/94 (71%), Positives = 78/94 (82%)

Query:    24 QRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLD--G 81
             Q KYKGIRRRKWGKWVSEIRVPG+++RLWLGS++T E AA+AHDVAFYCL RP SLD   
Sbjct:    11 QSKYKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCLHRPSSLDDES 70

Query:    82 LNFPSMLPASVVHAELSPKSVQKAASDAGMGVDA 115
              NFP +L  S+  + +SPKS+QKAASDAGM VDA
Sbjct:    71 FNFPHLLTTSLA-SNISPKSIQKAASDAGMAVDA 103

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2199711 AT1G22810 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 64/101 (63%), Positives = 82/101 (81%)

Query:    18 EENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPR 77
             E     Q KYKGIRRRKWGKWVSEIRVPG+++RLWLGS++T E AA+AHDVAF+CL +P 
Sbjct:     5 ESTGESQSKYKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCLHQPD 64

Query:    78 SLDGLNFPSMLPASVVHAELSPKSVQKAASDAGMGVDAQMV 118
             SL+ LNFP +L  S+V +  SP+S+Q+AAS+AGM +DA +V
Sbjct:    65 SLESLNFPHLLNPSLV-SRTSPRSIQQAASNAGMAIDAGIV 104

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2027171 ORA47 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 49/90 (54%), Positives = 63/90 (70%)

Query:    18 EENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPR 77
             + N A Q KYKG+R+RKWGKWVSEIR+P S+ER+WLGSY TPE AA A D A +CLR   
Sbjct:    12 KRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGD 71

Query:    78 SLDGLNFPSMLPASVVHAELSPKSVQKAAS 107
             +    NFP+  P+  V   L+P  +Q+AA+
Sbjct:    72 A--NFNFPNNPPSISVEKSLTPPEIQEAAA 99

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0002213 "defense response to insect" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2074765 CEJ1 "cooperatively regulated by ethylene and jasmonate 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/92 (52%), Positives = 65/92 (70%)

Query:    24 QRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLN 83
             +R +KGIR RKWGKWV+EIR P  + RLWLGSY+TPEAAA A+D A + LR P +   LN
Sbjct:    18 ERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTAT--LN 75

Query:    84 FPSMLPASVVHAELSPKSVQKAASDAGMGVDA 115
             FP +LP +    ++S  +++K A++ G  VDA
Sbjct:    76 FPELLPCTSAE-DMSAATIRKKATEVGAQVDA 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0010941 "regulation of cell death" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2155498 DEAR2 "DREB and EAR motif protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 50/92 (54%), Positives = 63/92 (68%)

Query:    25 RKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNF 84
             R YKGIR RKWGKWV+EIR P  + RLWLGSY+TPEAAA A+D A + LR P +   LNF
Sbjct:    19 RPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTAR--LNF 76

Query:    85 PSMLPASVVHAE-LSPKSVQKAASDAGMGVDA 115
             P +LP      E +S  +++K A++ G  VDA
Sbjct:    77 PELLPGEKFSDEDMSAATIRKKATEVGAQVDA 108

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2202200 AT1G19210 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 46/88 (52%), Positives = 59/88 (67%)

Query:    20 NAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSL 79
             +++ Q KYKG+R+RKWGKWVSEIR+P S+ER+WLGSY TPE AA A D A YCLR   + 
Sbjct:     5 SSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAK 64

Query:    80 DGLNFPSMLPASVVHAELSPKSVQKAAS 107
                NFP   P       LS   +++AA+
Sbjct:    65 --FNFPDNPPVISGGRNLSRSEIREAAA 90

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2204730 AT1G77640 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/107 (43%), Positives = 66/107 (61%)

Query:    25 RKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNF 84
             +KYKG+R R WG WV+EIR P  + R+WLGSY+T EAAA A+D A  CL+ P++   LNF
Sbjct:    41 KKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKA--NLNF 98

Query:    85 PSMLPAS--VVHAE----LSPKSVQKAASDAGMGVDAQMVLNKDKTD 125
             P++   S  +++ +    LSPKS+QK A+ A            D+ D
Sbjct:    99 PNITTTSPFLMNIDEKTLLSPKSIQKVAAQAANSSSDHFTPPSDEND 145

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2058641 DEAR3 "DREB and EAR motif protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 53/117 (45%), Positives = 68/117 (58%)

Query:     5 TKALPAKGMGSNIEENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAM 64
             T  + A  MG  I       + YKGIR RKWGKWV+EIR P  + R+WLGSYATPEAAA 
Sbjct:     8 TATVTAATMG--IGTRKRDLKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAAR 65

Query:    65 AHDVAFYCLRRPRSLDGLNFPSMLPASVVH------AELSPKSVQKAASDAGMGVDA 115
             A+D A + LR P +   LNFP +L    V        +LS   +++ A++ G  VDA
Sbjct:    66 AYDTAVFYLRGPSAR--LNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDA 120

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2194819 AT1G44830 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/103 (44%), Positives = 64/103 (62%)

Query:    15 SNIEENAAHQRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLR 74
             S+   ++   +KYKG+R R WG WVSEIR P  + R+WLGSY+T EAAA A+D A  CL+
Sbjct:    23 SSTSSSSIRMKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLK 82

Query:    75 RPRSLDGLNFPSMLPASVVHA--------ELSPKSVQKAASDA 109
                S + LNFP  +  S+ H         ++SPKS+Q+ A+ A
Sbjct:    83 GS-SANNLNFPE-ISTSLYHIINNGDNNNDMSPKSIQRVAAAA 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:1900030 "regulation of pectin biosynthetic process" evidence=IMP

TAIR|locus:2201103 DREB26 "dehydration response element-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 45/92 (48%), Positives = 61/92 (66%)

Query:    25 RKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNF 84
             +KYKG+R R WG WVSEIR P  + R+WLGSY+T EAAA A+DVA  CL+ P++   LNF
Sbjct:    48 KKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQA--NLNF 105

Query:    85 PSMLPASVV-------HAELSPKSVQKAASDA 109
             P+   +  +       +  LSPKS+Q+ A+ A
Sbjct:   106 PTSSSSHHLLDNLLDENTLLSPKSIQRVAAQA 137

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9I8	ERF20_ARATH	No assigned EC number	0.7127	0.5617	0.6363	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-24
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-23
pfam00847	53	pfam00847, AP2, AP2 domain	1e-08

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 89.6 bits (223), Expect = 1e-24
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 2/66 (3%)

Query: 26 KYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFP 85
          KY+G+R+R WGKWV+EIR P   +R+WLG++ T E AA A+D A +  R   +   LNFP
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSAR--LNFP 58

Query: 86 SMLPAS 91
          + L  S
Sbjct: 59 NSLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 86.2 bits (214), Expect = 3e-23
 Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 26 KYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFP 85
          KY+G+R+R WGKWV+EIR P    R+WLG++ T E AA A+D A   LR   ++  LNFP
Sbjct: 2  KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAV--LNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 26 KYKGIRRRK-WGKWVSEIRVPGSQ--ERLWLGSYATPEAAAMAHDVAFYCLR 74
           YKG+R  K WG+WV+EIR PG +  +R  LG++ T E AA A   A   LR
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLR 52

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.87
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.58
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.22
PF08846	68	DUF1816: Domain of unknown function (DUF1816); Int	80.04

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.87  E-value=3e-22  Score=134.64  Aligned_cols=61  Identities=51%  Similarity=0.922  Sum_probs=57.0

Q ss_pred             CceeEEEECCCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 045327           25 RKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSM   87 (162)
Q Consensus        25 S~yrGVr~r~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a~~~lNFp~~   87 (162)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.+++.++|.++  .+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a--~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSA--VLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCcc--ccCCCCC
Confidence            789999999899999999999545599999999999999999999999999999  9999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=9.5e-21  Score=128.88  Aligned_cols=62  Identities=50%  Similarity=0.935  Sum_probs=57.6

Q ss_pred             ceeEEEECCCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 045327           26 KYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSMLP   89 (162)
Q Consensus        26 ~yrGVr~r~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a~~~lNFp~~~~   89 (162)
                      +|+||+++++|||+|+|+++..++++|||+|+|+||||.|||.+++.++|+++  .+|||....
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a--~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSA--RLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCcc--ccCCCCccC
Confidence            59999998899999999997666799999999999999999999999999999  999998654

>PHA00280 putative NHN endonuclease

Probab=99.58  E-value=3.4e-15  Score=114.36  Aligned_cols=62  Identities=16%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             CCCcccCCCCCCceeEEEECC-CCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhcCCCC
Q 045327           14 GSNIEENAAHQRKYKGIRRRK-WGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRS   78 (162)
Q Consensus        14 ~~N~~~~~~~~S~yrGVr~r~-~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a   78 (162)
                      ..|+...++|+|||+||+|.+ .|||+|+|.+.++  +++||+|+|+|+|+.||+ ++.++||++|
T Consensus        56 ~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK--~~~lG~f~~~e~A~~a~~-~~~~lhGeFa  118 (121)
T PHA00280         56 SWNMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGK--QHNFRSRDLLEVVAWIYR-TRRELHGQFA  118 (121)
T ss_pred             hcccCCCCCCCCCCCeeEEecCCCeEEEEEEECCE--EEEcCCCCCHHHHHHHHH-HHHHHhhccc
Confidence            456667789999999999874 7999999999988  999999999999999997 7789999998

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.22  E-value=1.6e-11  Score=80.46  Aligned_cols=52  Identities=33%  Similarity=0.458  Sum_probs=45.3

Q ss_pred             CceeEEEECC-CCcEEEEEecC---CCCceeeeecCCcHHHHHHHHHHHHHHhcCC
Q 045327           25 RKYKGIRRRK-WGKWVSEIRVP---GSQERLWLGSYATPEAAAMAHDVAFYCLRRP   76 (162)
Q Consensus        25 S~yrGVr~r~-~GkW~AeIr~~---~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~   76 (162)
                      |+|+||++.+ .++|+|.|++.   +++++++||.|+++|||+++|+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899999875 79999999994   1136999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes

Probab=80.04  E-value=3.5  Score=28.83  Aligned_cols=42  Identities=19%  Similarity=0.266  Sum_probs=34.2

Q ss_pred             cEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhcCCCC
Q 045327           37 KWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRS   78 (162)
Q Consensus        37 kW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a   78 (162)
                      .|-++|.-..-+...|.|-|.|.+||..+..-....+-.+.+
T Consensus         9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~Ega   50 (68)
T PF08846_consen    9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLESEGA   50 (68)
T ss_pred             cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHhhCc
Confidence            577999887777789999999999999998777766655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-09
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-09

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 22 AHQRKYKGIRRRKWGKWVSEIRVPGSQ-ERLWLGSYATPEAAAMAHDVAFYCLRRPRSLD 80
          A  + Y+G+R+R WGK+ +EIR P     R+WLG++ T E AA+A+D A + +R  R+L 
Sbjct: 1  AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRAL- 59
Query: 81 GLNFP 85
           LNFP
Sbjct: 60 -LNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 27 YKGIRRRKWGKWVSEIRVPGSQ-ERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFP 85
          Y+G+R+R WGK+ +EIR P     R+WLG++ T E AA+A+D A + +R  R+L  LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRAL--LNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-21

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 82.0 bits (203), Expect = 1e-21
 Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 25 RKYKGIRRRKWGKWVSEIRVPGSQ-ERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLN 83
          + Y+G+R+R WGK+ +EIR P     R+WLG++ T E AA+A+D A + +R  R+L  LN
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRAL--LN 58

Query: 84 FP 85
          FP
Sbjct: 59 FP 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.94
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.73
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	86.44
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	84.75

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.94  E-value=4.9e-27  Score=159.86  Aligned_cols=62  Identities=45%  Similarity=0.889  Sum_probs=57.7

Q ss_pred             CceeEEEECCCCcEEEEEecCCC-CceeeeecCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 045327           25 RKYKGIRRRKWGKWVSEIRVPGS-QERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSML   88 (162)
Q Consensus        25 S~yrGVr~r~~GkW~AeIr~~~k-~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a~~~lNFp~~~   88 (162)
                      .+||||++++||||+|+|+++.+ ++++|||||+|+||||+|||.|+++++|.++  ++|||+++
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a--~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRA--LLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCC--CCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCccc--ccCCCCcC
Confidence            37999999999999999999975 4799999999999999999999999999999  99999863

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.73  E-value=0.052  Score=37.84  Aligned_cols=28  Identities=18%  Similarity=0.302  Sum_probs=22.9

Q ss_pred             CCCCCceeEEEECC-CCcEEEEEecCCCC
Q 045327           21 AAHQRKYKGIRRRK-WGKWVSEIRVPGSQ   48 (162)
Q Consensus        21 ~~~~S~yrGVr~r~-~GkW~AeIr~~~k~   48 (162)
                      ....|+|+||+|.+ .+.|+|.-.+++++
T Consensus         2 ~~~~Sg~pGVsw~kR~~~WlA~W~e~g~r   30 (77)
T 3igm_B            2 SHMSSGYPGVSWNKRMCAWLAFFYDGASR   30 (77)
T ss_dssp             --CCSSSTTEEEETTTTEEEEEEEETTEE
T ss_pred             CCCCCCCCcEEeecCCceEEEEEecCCeE
Confidence            35789999999986 79999999988764

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=86.44  E-value=1.8  Score=30.01  Aligned_cols=44  Identities=23%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             EEECCCC--cEEEEEecCCCCceeeeecCCc--HHHHHHHHHHHHHHh
Q 045327           30 IRRRKWG--KWVSEIRVPGSQERLWLGSYAT--PEAAAMAHDVAFYCL   73 (162)
Q Consensus        30 Vr~r~~G--kW~AeIr~~~k~~ri~LGtf~T--~EeAA~AYD~aa~~~   73 (162)
                      |+-.+.|  .|+-+.+..++..++-||.|+.  .++|-..-+.+...+
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l   75 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML   75 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            4445544  5999999999888999999984  777777766665554

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=84.75  E-value=0.24  Score=37.91  Aligned_cols=38  Identities=13%  Similarity=-0.006  Sum_probs=28.1

Q ss_pred             eeEEEECCCCcEEEEEecCCCCceeeeecCCcHHHHHHHHH
Q 045327           27 YKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHD   67 (162)
Q Consensus        27 yrGVr~r~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD   67 (162)
                      ++||.+...++|.+.|... +  .++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence            3455442235688888877 4  678999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-21

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.5 bits (199), Expect = 1e-21
 Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 25 RKYKGIRRRKWGKWVSEIRVPGSQE-RLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLN 83
          + Y+G+R+R WGK+ +EIR P     R+WLG++ T E AA+A+D A + +R  R+L  LN
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRAL--LN 58

Query: 84 FP 85
          FP
Sbjct: 59 FP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=4.3e-27  Score=158.96  Aligned_cols=60  Identities=47%  Similarity=0.893  Sum_probs=56.0

Q ss_pred             ceeEEEECCCCcEEEEEecCCC-CceeeeecCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 045327           26 KYKGIRRRKWGKWVSEIRVPGS-QERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSM   87 (162)
Q Consensus        26 ~yrGVr~r~~GkW~AeIr~~~k-~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a~~~lNFp~~   87 (162)
                      +||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||+|+++++|+++  .+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a--~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRA--LLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCC--CCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCc--ccCCCcc
Confidence            5999999999999999999865 4689999999999999999999999999999  9999975