Citrus Sinensis ID: 045328

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-
MAASQNSQKYPTMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKSNDDQTVKCDEEALIGFVKEAAFEK
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHcc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEcccHcccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHHEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcc
maasqnsqkyptmpeVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLamgmeplcgqgfgsrnlsLVSLTLQRTILMLLIASIPIALLWFkleplmlslhqtpdiaRVAGVYCRYaipdlvansflHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLslgvpgiaISNFITNFNSLFFLLCYMFVtrasdeplstplktsqtlptssltnssslgheWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYtlpmalsssvstrvgnelgagrpvKARLATVVAIGLALLVSLFGLLgttlgreawgrvftNDVQVLELTKtvlpiiglcelancpqttscgilrgsarpgigatINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAAnlvgksnddqtvkcdeEALIGFVKEAAFEK
maasqnsqkyptmPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLstplktsqtlptssltnsssLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKaanlvgksnddqtvkCDEEALIGFvkeaafek
MAASQNSQKYPTMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMgrlgslelaggalaigFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEplstplktsqtlptssltnssslGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIglallvslfgllgttlgREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKSNDDQTVKCDEEALIGFVKEAAFEK
*****************DELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTR**************************LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKSNDDQTVKCDEEALIGFVK******
***************VLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKA*******************************
**********PTMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDE********************SSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKSNDDQTVKCDEEALIGFVKEAAFEK
*********YPTMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKSN*********EALIGFVKEAAFEK
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAASQNSQKYPTMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKSNDDQTVKCDEEALIGFVKEAAFEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query501 2.2.26 [Sep-21-2011]
Q9SIA4476 MATE efflux family protei no no 0.900 0.947 0.309 1e-55
A1L1P9590 Multidrug and toxin extru no no 0.898 0.762 0.311 2e-54
Q9SIA3476 MATE efflux family protei no no 0.892 0.939 0.297 6e-54
Q9SIA5476 MATE efflux family protei no no 0.888 0.934 0.295 7e-54
Q8GXM8476 MATE efflux family protei no no 0.878 0.924 0.296 1e-53
A4IIS8574 Multidrug and toxin extru yes no 0.838 0.731 0.326 1e-53
Q8RWF5483 MATE efflux family protei no no 0.874 0.906 0.294 5e-53
Q3V050573 Multidrug and toxin extru yes no 0.894 0.781 0.321 3e-50
Q9SIA1477 MATE efflux family protei no no 0.888 0.932 0.278 4e-49
Q9LUH3469 MATE efflux family protei no no 0.864 0.923 0.298 7e-49
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function desciption
 Score =  218 bits (555), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/465 (30%), Positives = 245/465 (52%), Gaps = 14/465 (3%)

Query: 15  EVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVL 74
           +V  ELK+++ +  P+AA+++  YL  ++ V+  G  G L+L+G ALA  FTN++G+S+L
Sbjct: 23  QVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIL 82

Query: 75  SGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPD 134
            GLA  +E LCGQ +G++    +           +   + I++LW  +E L++SL Q PD
Sbjct: 83  FGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPD 142

Query: 135 IARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYL 194
           I+RVAG Y  + IP L A++F  PL  +L ++G   PL++ TL ++ FH P+     +  
Sbjct: 143 ISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYAF 202

Query: 195 SLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHE 254
            LG  G A++  ++ +  +  L CY+  + + D       KT   + +  ++      H 
Sbjct: 203 GLGSNGAAMAISVSFWFYVVILSCYVRYSSSCD-------KTRVFVSSDFVSCIKQFFH- 254

Query: 255 WGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALS 314
                   +PS   VCLEWW +E + + +G L NP+   +  ++ + T SL Y +P  ++
Sbjct: 255 ------FGVPSAAMVCLEWWLFELLILCSGLLPNPKLETSVLSICLTTASLHYVIPGGVA 308

Query: 315 SSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLE 374
           ++VSTRV N+LGAG P  AR++ +  + L L+ S F        R   G  F+N  +V++
Sbjct: 309 AAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAFSNSKEVVD 368

Query: 375 LTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKL 434
               + P++ L  + +       G+ RGS    IGA  N  ++YLVGAP+ + LAF  +L
Sbjct: 369 YVANLTPLLCLSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGVYLAFNREL 428

Query: 435 GFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKSND 479
              GL  G++       + +  V    +W+ +  KA   +  S +
Sbjct: 429 NGKGLWCGVVVGSAVQAIILAFVTASINWKEQAEKARKRMVSSEN 473

Arabidopsis thaliana (taxid: 3702)
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|A4IIS8|S47A1_XENTR Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query501
255551809503 multidrug resistance pump, putative [Ric 0.976 0.972 0.770 0.0
225431762500 PREDICTED: multidrug and toxin extrusion 0.986 0.988 0.739 0.0
147792120536 hypothetical protein VITISV_019282 [Viti 0.944 0.882 0.765 0.0
356558177516 PREDICTED: MATE efflux family protein DT 0.990 0.961 0.699 0.0
356519954506 PREDICTED: multidrug and toxin extrusion 0.970 0.960 0.723 0.0
356564601507 PREDICTED: multidrug and toxin extrusion 0.972 0.960 0.722 0.0
356532563528 PREDICTED: MATE efflux family protein 9- 0.982 0.931 0.701 0.0
224107094474 predicted protein [Populus trichocarpa] 0.910 0.962 0.785 0.0
449465565510 PREDICTED: MATE efflux family protein 7- 0.988 0.970 0.660 0.0
449526022510 PREDICTED: LOW QUALITY PROTEIN: MATE eff 0.988 0.970 0.658 0.0
>gi|255551809|ref|XP_002516950.1| multidrug resistance pump, putative [Ricinus communis] gi|223544038|gb|EEF45564.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/496 (77%), Positives = 427/496 (86%), Gaps = 7/496 (1%)

Query: 1   MAASQNSQKYPTMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGA 60
           MA+ + SQKYPTMPEV+DELKRMTDIGFPIAAMSLV YLKNM+LVVCMGRLGSLELAGGA
Sbjct: 1   MASLEKSQKYPTMPEVVDELKRMTDIGFPIAAMSLVGYLKNMILVVCMGRLGSLELAGGA 60

Query: 61  LAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWF 120
           LAIGFTNITGYSVLSGLA GMEPLC Q FGSRNLS+ S TLQRTILMLL+AS+PI L+W 
Sbjct: 61  LAIGFTNITGYSVLSGLATGMEPLCSQAFGSRNLSVASQTLQRTILMLLLASLPIGLVWV 120

Query: 121 KLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISI 180
            LEPLML+LHQ PDI+R+A +YCR+++PDL+ANS LHPLRIYLRSKGTTWPLMW TL+SI
Sbjct: 121 NLEPLMLTLHQDPDISRLASLYCRFSLPDLIANSLLHPLRIYLRSKGTTWPLMWCTLVSI 180

Query: 181 AFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTL 240
             H P+ ++L F L LGVPGIAIS FI+NFN L FLLCY++ T   +EPL  PL   Q  
Sbjct: 181 VLHLPITVFLAFTLHLGVPGIAISTFISNFNILLFLLCYIYFTHVPEEPLYAPLSQPQPF 240

Query: 241 PTSSLTNSSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVI 300
             SS   + SLG EWGIL+RL+IPSC+AVCLEWWWYEFMTILAGYL  P+ ALATSA+VI
Sbjct: 241 TPSS---TPSLGKEWGILLRLSIPSCIAVCLEWWWYEFMTILAGYLSKPRVALATSAIVI 297

Query: 301 QTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGRE 360
           QTTSL+YTLP ALS+SVSTRVGNELGAGRP KARLAT VAIGLALL SLFGL+ TTLGR+
Sbjct: 298 QTTSLLYTLPTALSASVSTRVGNELGAGRPGKARLATTVAIGLALLSSLFGLILTTLGRQ 357

Query: 361 AWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLV 420
           AWGRVFT D +VLELT  VLPIIGLCELANCPQTTSCGILRGSARPGIGA INFYSFYLV
Sbjct: 358 AWGRVFTGDDEVLELTVIVLPIIGLCELANCPQTTSCGILRGSARPGIGAAINFYSFYLV 417

Query: 421 GAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKSND- 479
           GAP+A+VLAFVW+LGFVGLCYGLL AQIACVVSILT V+KT+WERE+ KA +LVGK++  
Sbjct: 418 GAPVAVVLAFVWRLGFVGLCYGLLAAQIACVVSILTAVYKTNWERESSKAKDLVGKNDTL 477

Query: 480 ---DQTVKCDEEALIG 492
              D TVKC+E   IG
Sbjct: 478 AHADPTVKCEEGEEIG 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431762|ref|XP_002270564.1| PREDICTED: multidrug and toxin extrusion protein 1 [Vitis vinifera] gi|296083343|emb|CBI22979.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147792120|emb|CAN68577.1| hypothetical protein VITISV_019282 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558177|ref|XP_003547384.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|356519954|ref|XP_003528633.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356564601|ref|XP_003550540.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356532563|ref|XP_003534841.1| PREDICTED: MATE efflux family protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|224107094|ref|XP_002314374.1| predicted protein [Populus trichocarpa] gi|222863414|gb|EEF00545.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465565|ref|XP_004150498.1| PREDICTED: MATE efflux family protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526022|ref|XP_004170014.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein 7-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query501
TAIR|locus:2155179502 AT5G49130 "AT5G49130" [Arabido 0.956 0.954 0.610 5.1e-161
TAIR|locus:2013006510 AT1G71870 "AT1G71870" [Arabido 0.956 0.939 0.460 1.7e-114
TAIR|locus:2119941532 ADS1 "AT4G29140" [Arabidopsis 0.437 0.411 0.515 1.2e-108
TAIR|locus:2183169508 AT5G19700 "AT5G19700" [Arabido 0.439 0.433 0.513 2.8e-105
TAIR|locus:2016615532 ZF14 "AT1G58340" [Arabidopsis 0.918 0.864 0.417 3.3e-102
TAIR|locus:2127193502 AT4G23030 "AT4G23030" [Arabido 0.449 0.448 0.515 4.6e-101
TAIR|locus:2173098505 AT5G52050 [Arabidopsis thalian 0.924 0.916 0.412 2.2e-98
TAIR|locus:2064138486 AT2G38510 "AT2G38510" [Arabido 0.463 0.477 0.421 1.9e-91
TAIR|locus:2132619491 AT4G22790 "AT4G22790" [Arabido 0.910 0.928 0.328 1.7e-66
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.469 0.483 0.327 4.2e-63
TAIR|locus:2155179 AT5G49130 "AT5G49130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1568 (557.0 bits), Expect = 5.1e-161, P = 5.1e-161
 Identities = 296/485 (61%), Positives = 357/485 (73%)

Query:     9 KY-PTMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMXXXXXXXXXXXXXXXXFTN 67
             KY PTMPEV++ELKR+ DI FP+AAMS++NYLKNM  VVCM                FTN
Sbjct:    15 KYNPTMPEVVEELKRIWDISFPVAAMSILNYLKNMTSVVCMGRLGSLELAGGALAIGFTN 74

Query:    68 ITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLML 127
             ITGYSVLSGLA GMEPLCGQ  GS+N SL SLTL+RTI +LL+AS+PI+LLW  L PLML
Sbjct:    75 ITGYSVLSGLATGMEPLCGQAIGSKNPSLASLTLKRTIFLLLLASLPISLLWLNLAPLML 134

Query:   128 SLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLI 187
              L Q  DI RVA +YC +++PDL+ANSFLHPLRIYLR KGTTWPLMW TL+S+  H P+ 
Sbjct:   135 MLRQQHDITRVASLYCSFSLPDLLANSFLHPLRIYLRCKGTTWPLMWCTLVSVLLHLPIT 194

Query:   188 IYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEXXXXXXXXXXXXXXXXXXX 247
              + TFY+SLGVPG+A+S+F+TNF SL  LLCY+++   +++                   
Sbjct:   195 AFFTFYISLGVPGVAVSSFLTNFISLSLLLCYIYLENNNNDKTTSKSLCLDTPLMLYGSR 254

Query:   248 XXXXGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMY 307
                    W  L++ A+PSC+AVCLEWWWYEFMT+LAGYL  P+ ALA +A+VIQTTSLMY
Sbjct:   255 DSGENDVWSTLVKFAVPSCIAVCLEWWWYEFMTVLAGYLPEPKVALAAAAIVIQTTSLMY 314

Query:   308 TLPMALSSSVSTRVGNELGAGRPVKARLATVVAIXXXXXXXXXXXXXXXXXREAWGRVFT 367
             T+P ALS++VSTRV NELGAGRP KA+ A  VA+                 REAWG+VFT
Sbjct:   315 TIPTALSAAVSTRVSNELGAGRPEKAKTAATVAVGAAVAVSVFGLVGTTVGREAWGKVFT 374

Query:   368 NDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIV 427
              D  VLELT  V+P+IG CELANCPQT SCGILRGSARPGIGA INFY+FY+VGAP+A+V
Sbjct:   375 ADKVVLELTAAVIPVIGACELANCPQTISCGILRGSARPGIGAKINFYAFYVVGAPVAVV 434

Query:   428 LAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKS----NDDQT- 482
             LAFVW LGF+GLCYGLLGAQ+AC +SILTVV+ TDW +E+ KA +LVGK+    N DQ  
Sbjct:   435 LAFVWGLGFMGLCYGLLGAQLACAISILTVVYNTDWNKESLKAHDLVGKNVISPNVDQII 494

Query:   483 VKCDE 487
             VKC+E
Sbjct:   495 VKCEE 499
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2013006 AT1G71870 "AT1G71870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119941 ADS1 "AT4G29140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183169 AT5G19700 "AT5G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016615 ZF14 "AT1G58340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127193 AT4G23030 "AT4G23030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173098 AT5G52050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064138 AT2G38510 "AT2G38510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132619 AT4G22790 "AT4G22790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-158
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-56
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-49
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-39
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-29
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 9e-29
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-27
pfam01554161 pfam01554, MatE, MatE 9e-26
pfam01554161 pfam01554, MatE, MatE 9e-25
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 3e-24
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 8e-24
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-21
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 6e-19
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 6e-17
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-12
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 2e-12
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 3e-12
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-11
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-11
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 9e-11
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-10
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 6e-10
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 9e-09
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-08
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-06
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 6e-06
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-05
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 3e-05
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 3e-04
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 8e-04
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.003
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  455 bits (1172), Expect = e-158
 Identities = 172/449 (38%), Positives = 271/449 (60%), Gaps = 15/449 (3%)

Query: 19  ELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLA 78
           E K++  +  P+   SL+ Y  ++V VV +G LG LELA  +LA  F N+TG+S+L GLA
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 79  MGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARV 138
             ++ LCGQ FG++N  LV + LQR +++LL+  +PI+LLW   EP++L L Q P+IAR+
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 139 AGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGV 198
           AG Y R+ IP L A +   PL+ YL+++G   PL++ +L+++  +  L   L F L LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 199 PGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHEWGIL 258
            G A++  I+ +  +  LL Y+F ++              T    S          WG  
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSK----------GHKATWGGFSREAF----RGWGPF 226

Query: 259 IRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVS 318
           ++LAIPS + +CLEWW +E + +LAG L     ALA  ++ + TTSL+Y +P+ +S + S
Sbjct: 227 LKLAIPSALMLCLEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAAS 285

Query: 319 TRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKT 378
            RVGNELGAG P +A+LA +VA+ L+L++ +   +   + R+ W  +FT+D +V+ L   
Sbjct: 286 VRVGNELGAGNPKRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVAD 345

Query: 379 VLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVG 438
           +LPI+ L ++ +  Q    G+LRG  R  +GA +N  ++YL+G P+ ++LAFV  LG  G
Sbjct: 346 LLPILALFQIFDGLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKG 405

Query: 439 LCYGLLGAQIACVVSILTVVFKTDWERET 467
           L  GL+   I   V +L ++ +TDW++E 
Sbjct: 406 LWIGLIAGLILQAVILLLIILRTDWDKEA 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 501
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.98
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.88
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.88
PRK00187464 multidrug efflux protein NorA; Provisional 99.87
PRK10189 478 MATE family multidrug exporter; Provisional 99.86
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.86
PRK01766 456 multidrug efflux protein; Reviewed 99.85
TIGR01695502 mviN integral membrane protein MviN. This model re 99.82
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.81
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.76
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.75
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.73
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.73
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.71
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.7
PRK10459492 colanic acid exporter; Provisional 99.68
PRK15099416 O-antigen translocase; Provisional 99.65
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.63
COG2244480 RfbX Membrane protein involved in the export of O- 99.57
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.3
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.2
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.15
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.94
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.52
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.36
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.16
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.92
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.86
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.84
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.76
COG4267467 Predicted membrane protein [Function unknown] 97.7
PF0055881 Vpu: Vpu protein; InterPro: IPR008187 The Human im 83.86
COG4267 467 Predicted membrane protein [Function unknown] 80.29
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-56  Score=444.34  Aligned_cols=435  Identities=26%  Similarity=0.356  Sum_probs=413.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChh
Q 045328           16 VLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLS   95 (501)
Q Consensus        16 ~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~   95 (501)
                      .++..|+++++++|++++++.+.+++.+|++++||+|++++|+.+++.++..+. ..+..|++.|.++.+||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            667899999999999999999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHH
Q 045328           96 LVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMW  174 (501)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  174 (501)
                      ++++..++++.++++++++.+++ +.+.+|++.+++.++|+.+.+.+|+++..++.|+..+...+.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999888876 88999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-hc-CCcchhHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCcccCCCCCCCCcCCCCCc
Q 045328          175 STLISIAFHFPLIIYLTFY-LS-LGVPGIAISNFITNFNSLFFLLCYMFVTRAS--DEPLSTPLKTSQTLPTSSLTNSSS  250 (501)
Q Consensus       175 ~~i~~~i~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  250 (501)
                      .+++++++|+++|++|+++ ++ +|+.|+++||++++.+.+++..++++++++.  .+..                ..++
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~  234 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK----------------KLLK  234 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhh----------------hccC
Confidence            9999999999999999998 46 9999999999999999999999999877642  1111                2223


Q ss_pred             -chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCC
Q 045328          251 -LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGR  329 (501)
Q Consensus       251 -~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~  329 (501)
                       +++.+|++++.|.|..+++..+...+...+.++++++  ++++|+|+++.++.++.++++.|++++..|++++++|+||
T Consensus       235 ~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~  312 (455)
T COG0534         235 PDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGN  312 (455)
T ss_pred             CCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence             8999999999999999999999999999999999997  9999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcch
Q 045328          330 PVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIG  409 (501)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  409 (501)
                      ++++|+..+.+.++++.++...++.+++++++++++|++|+|+.+.+..++++.++.+++++++.+..+++||.||++.+
T Consensus       313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~  392 (455)
T COG0534         313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP  392 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Q 045328          410 ATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKA  470 (501)
Q Consensus       410 ~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~  470 (501)
                      +..++.+.|.+.+|+.+++.... +|..|+|++...++.+..++..+++++.+|+++....
T Consensus       393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            99999999999999999999876 8999999999999999999999999999998765443

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-07
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 4e-04
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 135/358 (37%), Gaps = 20/358 (5%)
Query: 76  GLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDI 135
           GL M + P+  Q  G+     +   + + +++ L+ S+PI  + F+ + ++  +     +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 136 ARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLS 195
           A     Y    I  + A      LR +      T P M    I +  + PL  ++  Y  
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLN-WIFVYGK 184
Query: 196 LGVP-----GIAISNFITNFNSLFFLLCYMFVTRASDEXXXXXXXXXXXXXXXXXXXXXX 250
            G P     G  ++  I  +  L  LL Y+  ++                          
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQP---------- 234
Query: 251 XGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLP 310
              E   L RL  P   A+  E   +  + +L   L +    +A   + +  +SL++  P
Sbjct: 235 --KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFP 290
Query: 311 MALSSSVSTRVGNELGAGRPVKARLATVVAIXXXXXXXXXXXXXXXXXREAWGRVFTNDV 370
           M++ ++VS RVG++LG      A +A  V +                 RE    ++T + 
Sbjct: 291 MSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQ 350
Query: 371 QVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVL 428
            V+ L   +L    + +  +  Q  + G LRG           F S++++G P   +L
Sbjct: 351 VVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYIL 408
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 5e-78
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  250 bits (641), Expect = 5e-78
 Identities = 88/450 (19%), Positives = 170/450 (37%), Gaps = 21/450 (4%)

Query: 12  TMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGY 71
           ++     E   +  +  P+   S+       V  +  G + ++++A  ++A         
Sbjct: 3   SVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSI 61

Query: 72  SVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQ 131
               GL M + P+  Q  G+     +   + + +++ L+ S+PI  + F+ + ++  +  
Sbjct: 62  LFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDV 121

Query: 132 TPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLT 191
              +A     Y    I  + A      LR +      T P M    I +  + PL     
Sbjct: 122 EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFV 181

Query: 192 F----YLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTN 247
           +       LG  G  ++  I  +  L  LL Y+  ++         +K  +T        
Sbjct: 182 YGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLA-----HVKVFETFHKPQP-- 234

Query: 248 SSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMY 307
                 E   L RL  P   A+  E   +  + +L   L      +A   + +  +SL++
Sbjct: 235 -----KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVF 287

Query: 308 TLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFT 367
             PM++ ++VS RVG++LG      A +A  V +   L  +    L T L RE    ++T
Sbjct: 288 MFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYT 347

Query: 368 NDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIV 427
            +  V+ L   +L    + +  +  Q  + G LRG           F S++++G P   +
Sbjct: 348 ENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYI 407

Query: 428 LAFVWKLGFVGLCYGLLGAQIACVVSILTV 457
           L     L    L  G  G  +  ++ +   
Sbjct: 408 LGMTNWLTEQPL--GAKGFWLGFIIGLSAA 435
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query501
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.81
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 86.99
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 81.35
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.5e-48  Score=396.10  Aligned_cols=432  Identities=20%  Similarity=0.293  Sum_probs=397.5

Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCC
Q 045328           14 PEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRN   93 (501)
Q Consensus        14 ~~~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~   93 (501)
                      ...++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++++..+.++|++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            45678899999999999999999999999999999999999999999999998877 78889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHH
Q 045328           94 LSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLM  173 (501)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  173 (501)
                      +++.++.++.++.+..+.++++++++.+.+|+..+++.+++..+.+..|+++++++.++..+...+.+++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999999987777788999998888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-h---cCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCC
Q 045328          174 WSTLISIAFHFPLIIYLTFY-L---SLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSS  249 (501)
Q Consensus       174 ~~~i~~~i~~i~l~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (501)
                      ..++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..++.+++++.+....+              +++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~  229 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVF--------------ETF  229 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCS--------------CCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhh--------------hcc
Confidence            99999999999999999975 3   68999999999999999999988887655433211000              111


Q ss_pred             -c-chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 045328          250 -S-LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGA  327 (501)
Q Consensus       250 -~-~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~  327 (501)
                       + +++.+|+++++|.|.+++++..++...+++.++++++  ++++|+|++++++.++..++..+++++..|.+++++|+
T Consensus       230 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~  307 (460)
T 3mkt_A          230 HKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE  307 (460)
T ss_dssp             CSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             2 7888999999999999999999999999999999985  89999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCc
Q 045328          328 GRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPG  407 (501)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~  407 (501)
                      +|.+++++..+++.++.+.++++.++++.++++++..+|++|+++.+.+..++++++++.++.+++.+..+++++.||++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  387 (460)
T 3mkt_A          308 QDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMT  387 (460)
T ss_dssp             SCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence            99999999999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHH----hc-ccchhhhHHHHHHHHHHHHHHHHHHHhcC
Q 045328          408 IGATINFYSFYLVGAPLAIVLAFV----WK-LGFVGLCYGLLGAQIACVVSILTVVFKTD  462 (501)
Q Consensus       408 ~~~~~~~~~~~i~~i~~~~~l~~~----~~-~g~~G~~~a~~i~~~i~~~~~~~~~~~~~  462 (501)
                      .+++.++.+.|++++|+.+++.+.    ++ +|..|+|+++.+++++..++..++++|..
T Consensus       388 ~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          388 AIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999889999999999877    56 89999999999999999888877666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00