Citrus Sinensis ID: 045333

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MAPELGLLSSTQHKKLAQSQQNQPSPSLSPGKTWMLNQKREPQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQAQPHASSSSSTLIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNNLIGLPPSTNFPVASQCYSTKDPLGSINDNSNACNESAIEELDLELRLGQRPTPT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHcHHcHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccEEEEHccccccHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccc
Coil and Loop (DISEMBL)
mapelgllssTQHKKLAqsqqnqpspslspgktwmlnqkrepqedddsWEVRAFAEdtgnimgttwpprsytctfcRREFRSAqalgghmnvhrrdrarlhhhqaqphassssstliipttqeftansgycllyqlpnpnggvfasttmtacaiddspstllsispyppnnliglppstnfpvasqcystkdplgsindnsnacneSAIEELDLElrlgqrptpt
Flexible Loop (DISEMBL)
MAPELGLLSSTQHKKLaqsqqnqpspslspgktWMLNQKrepqedddsWEVRAFAedtgnimgttwppRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQaqphassssstliIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNNLIGLPPSTNFPVASQCYSTKDPLGSINDNSNACNESAIEELdlelrlgqrptpt
Low Complexity Region (SEG)
MAPELGLLSSTQHKKLAqsqqnqpspslspGKTWMLNQKREPQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLhhhqaqphasssssTLIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNNLIGLPPSTNFPVASQCYSTKDPLGSINDNSNACNESAIEELDLELRLGQRPTPT
Disordered region (IsUnstruct)
************************************************WEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGG***************************LIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNNLIGL*****F*V******************************************
Disordered Region (DISOPRED)
*****GL**************************************************************SYTCTFCRREFRSAQAL************************************************************************************************************************************GQ*****
Disordered Region (DISEMBL)
MAPELGLLSS******************SPGKTWMLN***********WEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR*****************TLIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNNLIGLPPSTNFPVASQCYSTKDPLGSINDNSNACNESAIEELDLELRLGQRPTPT
Disordered Region (DISPRO)
*****GLLSSTQHKKLAQS*****************************************IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHH*******************EFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSP****************************************************ELDLEL*LGQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPELGLLSSTQHKKLAQSQQNQPSPSLSPGKTWMLNQKREPQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQAQPHASSSSSTLIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNNLIGLPPSTNFPVASQCYSTKDPLGSINDNSNACNESAIEELDLELRLGQRPTPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9LHS9	226	Probable transcriptional	no	no	0.288	0.287	0.597	7e-17
Q38895	204	Transcriptional regulator	no	no	0.217	0.240	0.734	1e-16
Q9SR34	172	Transcriptional regulator	no	no	0.546	0.715	0.335	5e-10
Q39266	209	Zinc finger protein 7 OS=	no	no	0.208	0.224	0.428	8e-07
Q42485	228	Zinc finger protein 1 OS=	no	no	0.133	0.131	0.566	1e-05
Q39262	235	Zinc finger protein 3 OS=	no	no	0.275	0.263	0.385	6e-05
Q39263	260	Zinc finger protein 4 OS=	no	no	0.128	0.111	0.551	0.0001
Q39265	197	Zinc finger protein 6 OS=	no	no	0.204	0.233	0.379	0.0003
Q39261	150	Zinc finger protein 2 OS=	no	no	0.133	0.2	0.533	0.0003
Q9FFX4	161	Zinc finger protein KNUCK	no	no	0.133	0.186	0.533	0.0007

>sp|Q9LHS9|RBE_ARATH Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2

 Score = 87.4 bits (215), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 50  EVRAFA--EDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQAQP 107
           E RAFA  E+ G   G  WPPRSY+C+FC REF+SAQALGGHMNVHRRDRARL      P
Sbjct: 32  EERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSP 91

Query: 108 HASSSSS 114
            ++  ++
Sbjct: 92  SSTDQAT 98

Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38895|SUP_ARATH Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query: 56  EDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQ 104
           +D   ++G +WPPRSYTC+FC+REFRSAQALGGHMNVHRRDRARL   Q
Sbjct: 32  QDHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQ 80

Probable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR34|TAC1_ARATH Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 68/161 (42%), Gaps = 38/161 (23%)

Query: 69  RSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQAQPH-----ASSSSSTLIIPTTQE 123
           RSY C+FC R F +AQALGGHMN+HRRDRA+L     + +     A S +S ++     E
Sbjct: 33  RSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQKLMEDNKDDVVAESDASEVVSLDLNE 92

Query: 124 FTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNNLIGLPPSTNFPV 183
                G  L                   C  DD          Y  N+ I       F V
Sbjct: 93  QQQQQGEAL------------------TC--DDHD-------QYVDND-ISPKQKLEFWV 124

Query: 184 ASQCYSTKDPLGSIN----DNSNACNESAIEELDLELRLGQ 220
                 T D  G +     D S++ +   IE LDLELRLGQ
Sbjct: 125 QESKLDTNDH-GKVTEASIDGSSSSHHRDIEVLDLELRLGQ 164

Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39266|ZFP7_ARATH Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 9/56 (16%)

Query: 68  PRSYTCTFCRREFRSAQALGGHMNVHRRDR---------ARLHHHQAQPHASSSSS 114
           PR ++C +CRR+F S+QALGGH N H+R+R          R+  H  +P+  +SSS
Sbjct: 56  PRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPYTYTSSS 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q42485|ZFP1_ARATH Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 25/30 (83%)

Query: 68 PRSYTCTFCRREFRSAQALGGHMNVHRRDR 97
          PR ++C +C+R+F S+QALGGH N H+R+R
Sbjct: 65 PRVFSCNYCQRKFYSSQALGGHQNAHKRER 94

Arabidopsis thaliana (taxid: 3702)

>sp|Q39262|ZFP3_ARATH Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 36 LNQKREPQEDD---DSWEVRAF--AEDTGNIMG---TTWPPRSYTCTFCRREFRSAQALG 87
          LNQ  E +E D    S E+      +DT +I+    T+   + ++C +C+R F S+QALG
Sbjct: 18 LNQSIEDEERDVHNSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALG 77

Query: 88 GHMNVHRRDR 97
          GH N H+R+R
Sbjct: 78 GHQNAHKRER 87

Arabidopsis thaliana (taxid: 3702)

>sp|Q39263|ZFP4_ARATH Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 24/29 (82%)

Query: 69  RSYTCTFCRREFRSAQALGGHMNVHRRDR 97
           R ++C +C+R+F S+QALGGH N H+R+R
Sbjct: 83  RVFSCNYCQRKFYSSQALGGHQNAHKRER 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q39265|ZFP6_ARATH Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 12/58 (20%)

Query: 63  GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL------------HHHQAQPH 108
           G+    R Y C +C REF ++QALGGH N H+++R  L             HH   PH
Sbjct: 33  GSGSESRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMLATRGLPRHHNFHPH 90

Arabidopsis thaliana (taxid: 3702)

>sp|Q39261|ZFP2_ARATH Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 24/30 (80%)

Query: 68 PRSYTCTFCRREFRSAQALGGHMNVHRRDR 97
          PR ++C +C+R+F S+QALGGH N H+ +R
Sbjct: 49 PRVFSCNYCQRKFYSSQALGGHQNAHKLER 78

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFX4|KNU_ARATH Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 69 RSYTCTFCRREFRSAQALGGHMNVHRRDRA 98
          R + C +C R+F ++QALGGH N H+R+RA
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERA 65

May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
224126281	239	predicted protein [Populus trichocarpa]	0.955	0.899	0.661	5e-67
225427222	250	PREDICTED: uncharacterized protein LOC10	0.973	0.876	0.609	3e-63
224138908	245	predicted protein [Populus trichocarpa]	0.955	0.877	0.639	1e-61
255557589	232	Transcriptional regulator SUPERMAN, puta	0.951	0.922	0.614	1e-60
308154468	211	palmate-like pentafoliata 1 transcriptio	0.897	0.957	0.575	2e-56
308154462	206	palmate-like pentafoliata 1 transcriptio	0.782	0.854	0.617	1e-51
357482391	251	Zinc finger (C2H2 type) containing prote	0.813	0.729	0.557	7e-50
298201170	254	PALMATE-LIKE PENTAFOLIATA1 [Medicago sat	0.848	0.751	0.547	7e-46
297742106	237	unnamed protein product [Vitis vinifera]	0.684	0.649	0.595	2e-44
356495535	250	PREDICTED: probable transcriptional regu	0.977	0.88	0.472	2e-37

>gi|224126281|ref|XP_002329516.1| predicted protein [Populus trichocarpa] gi|222870225|gb|EEF07356.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 160/242 (66%), Positives = 174/242 (71%), Gaps = 27/242 (11%)

Query: 1   MAPELGLLSSTQHKKLAQSQQNQPSPSLSPGKT---WMLNQKREPQEDDDSWEVRAFAED 57
           MA E+GLLS TQ + L QS QNQ     +P +T   WM N K+  QEDDDSWEVRAFAED
Sbjct: 1   MAAEIGLLSLTQLQNLPQSHQNQYQHQRNPSETPSFWMWNPKQT-QEDDDSWEVRAFAED 59

Query: 58  TGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQ---AQPH---ASS 111
           TGNI GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLH  Q     PH   +SS
Sbjct: 60  TGNINGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQTQPGSTNPHSSTSSS 119

Query: 112 SSSTLIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNN 171
           SSSTLIIP TQEF  NSG CLLYQLPNPN GVF  T MTAC+ID S STL+SI+PYP NN
Sbjct: 120 SSSTLIIP-TQEFPPNSGLCLLYQLPNPN-GVFTPTNMTACSIDSS-STLISITPYPHNN 176

Query: 172 LIGLPPSTNFPVA------SQCYST--KDPLGSINDN----SNACNESAIEELDLELRLG 219
           L+G  PS NFPVA      S CYS    +P  S + +    +N C E A EELDLELRLG
Sbjct: 177 LVG--PSLNFPVAPPEISTSHCYSNIKAEPSASTDHSNGIKNNNCKELANEELDLELRLG 234

Query: 220 QR 221
            R
Sbjct: 235 HR 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427222|ref|XP_002278326.1| PREDICTED: uncharacterized protein LOC100267849 [Vitis vinifera] gi|308154454|gb|ADO15279.1| palmate-like pentafoliata 1 transcription factor [Vitis vinifera]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/256 (60%), Positives = 177/256 (69%), Gaps = 37/256 (14%)

Query: 1   MAPELGLLSSTQHKKLAQSQQNQPSPSLSPGKT---WMLNQKREPQ-------EDDDSWE 50
           MA ELGL+S TQ +KLAQSQQ+Q     +P  T   WM N K+          EDDDSWE
Sbjct: 1   MAAELGLVSLTQLQKLAQSQQHQRPEEENPSSTSSSWMWNPKQAQTQAQAQAQEDDDSWE 60

Query: 51  VRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQAQP--- 107
           VRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL  HQ  P   
Sbjct: 61  VRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL--HQTHPGSN 118

Query: 108 -----HASSSSSTLIIPTTQEFTANSGYCLLYQL-PNPNGGVFASTTMTACAIDDSPSTL 161
                 +++SSSTLIIP TQEF  N G CLLYQL PNPN  +F  T++ +C   DSPSTL
Sbjct: 119 NPTSSSSTNSSSTLIIP-TQEFITNGGLCLLYQLPPNPN-ALFTPTSINSCM--DSPSTL 174

Query: 162 LSISPYPPNNLIG-LPPSTNFPVASQ----CYSTKDPLGSI----NDN---SNACNESAI 209
           LSI+PYPPNNLI   PPS NF    Q    C S+K    ++    +DN   SN  N+SA+
Sbjct: 175 LSIAPYPPNNLISPCPPSINFSAPPQGIALCPSSKPEPSAVSNGDDDNENTSNNYNDSAM 234

Query: 210 EELDLELRLGQRPTPT 225
           EELDLELRLG RP+P+
Sbjct: 235 EELDLELRLGHRPSPS 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138908|ref|XP_002326720.1| predicted protein [Populus trichocarpa] gi|222834042|gb|EEE72519.1| predicted protein [Populus trichocarpa] gi|308154464|gb|ADO15284.1| palmate-like pentafoliata 1 transcription factor [Populus trichocarpa]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 158/247 (63%), Positives = 170/247 (68%), Gaps = 32/247 (12%)

Query: 1   MAPELGLLSSTQHKKLAQSQQNQPS-PSLSPGKT---WMLNQKREPQEDDDSWEVRAFAE 56
           MA E+GLLS TQ +KL QSQQNQ     L+P +T   WM N K+  QE+DDSWEVRAFAE
Sbjct: 1   MAAEIGLLSLTQLQKLPQSQQNQYQLHQLNPNETPSVWMWNPKQT-QEEDDSWEVRAFAE 59

Query: 57  DTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQAQPHA------- 109
           DTGNI GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL  HQ QP +       
Sbjct: 60  DTGNINGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL--HQTQPGSINPNSST 117

Query: 110 -SSSSSTLIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYP 168
            SSSSST IIP TQEF  N+G CLLYQLPNPN GVF   TM ACA  DSPSTLLSI+PYP
Sbjct: 118 SSSSSSTFIIP-TQEFPPNAGLCLLYQLPNPN-GVFTPATMNACAT-DSPSTLLSITPYP 174

Query: 169 PNNLIGLPPSTNFPVA------SQCYSTK------DPLGSINDNSNACNESAIEELDLEL 216
            NNLI    S NF VA      S CYS K          +  ++ N   E A EELDLEL
Sbjct: 175 HNNLIE--KSLNFLVAPPEINTSHCYSIKAEPSASIDNSNNINSDNNFKELAHEELDLEL 232

Query: 217 RLGQRPT 223
           RLG R T
Sbjct: 233 RLGHRST 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557589|ref|XP_002519824.1| Transcriptional regulator SUPERMAN, putative [Ricinus communis] gi|223540870|gb|EEF42428.1| Transcriptional regulator SUPERMAN, putative [Ricinus communis] gi|308154466|gb|ADO15285.1| palmate-like pentafoliata 1 transcription factor [Ricinus communis]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/231 (61%), Positives = 163/231 (70%), Gaps = 17/231 (7%)

Query: 1   MAPELGLLSSTQH--KKLAQSQQNQPSPSLSPGKTWMLNQKREPQEDDDSWEVRAFAEDT 58
           MA ELGLLS  Q   +KLA+SQQNQ    L+   +WM N K +  ED+DSWEVRAF EDT
Sbjct: 1   MAAELGLLSLAQLELQKLAESQQNQHQHQLNSSSSWMWNPK-QTHEDEDSWEVRAFEEDT 59

Query: 59  GNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHH-------HQAQPHASS 111
           GNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLH          +    S+
Sbjct: 60  GNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQTPPGSINPNSSSTNST 119

Query: 112 SSSTLIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNN 171
           S+ST IIP  +EF+ N G CLLYQLPNPN G+F +T M ACAID SPSTLLSISPYP N 
Sbjct: 120 SASTFIIP-AREFSTNGGLCLLYQLPNPN-GIFTTTAMNACAIDHSPSTLLSISPYPHNY 177

Query: 172 LIGLPPSTNFPVASQCYSTK-DPLGSINDNSNACNESAIEELDLELRLGQR 221
            +  P       +S  YS+K  P+ S +++SN C +   EELDLELRLG R
Sbjct: 178 PVASPVVN----SSHFYSSKAQPVASTDNSSNNCKDLGNEELDLELRLGHR 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308154468|gb|ADO15286.1| palmate-like pentafoliata 1 transcription factor [Carica papaya]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 153/226 (67%), Gaps = 24/226 (10%)

Query: 1   MAPELGLLSSTQHKKLAQSQQNQPSPSLSPGKTWMLNQKREPQEDDDSWEVRAFAEDTGN 60
           MA ELGLLS TQ + +A         SLSPG  WM N  +  +++DDSWEVRAF +DTGN
Sbjct: 1   MAAELGLLSLTQLRNIA---------SLSPGA-WMWNPTQVAEQEDDSWEVRAFEQDTGN 50

Query: 61  IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQAQPHASSSSSTLIIPT 120
           IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLH   A      +++++IIP 
Sbjct: 51  IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQSSAPQPPGRAATSMIIP- 109

Query: 121 TQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNNLIGLPPSTN 180
           TQ+ TAN G CLLYQLPNP G + A T  T     DSPST+LSISPYP ++LI   P  N
Sbjct: 110 TQDLTANGGLCLLYQLPNPKGILAAPTGDTI----DSPSTILSISPYPSHHLIT--PPLN 163

Query: 181 FPVASQCYSTK--DPLGSINDNS-----NACNESAIEELDLELRLG 219
           F ++    STK   P     D S      A + +A+EE+DLELRLG
Sbjct: 164 FTLSPSSTSTKAQSPWVKSADVSANRLITADHSAAMEEVDLELRLG 209

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308154462|gb|ADO15282.1| palmate-like pentafoliata 1 transcription factor [Manihot esculenta]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/196 (61%), Positives = 138/196 (70%), Gaps = 20/196 (10%)

Query: 40  REPQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR 99
           ++ QEDDDSWEVRAF EDTGN MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR
Sbjct: 5   KQTQEDDDSWEVRAFQEDTGNAMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR 64

Query: 100 LHHHQAQPHASS----------SSSTLIIPTTQEFTAN-SGYCLLYQLPNPNGGVFASTT 148
           LH    QP   S          SSS ++IP  QEF+ N  G CLLYQLPNPN GVF+ST 
Sbjct: 65  LHQTVLQPPPGSIKPPSSSTSTSSSAILIP-AQEFSTNGGGLCLLYQLPNPN-GVFSSTA 122

Query: 149 MTACAIDDSPSTLLSISPYPPNNLIGLPPSTNFPVASQCYSTKDPLGSINDNS---NACN 205
           M ACA+ +SP TLLSISPY  +NLIG   + N+P AS   ++     S  +++   + C 
Sbjct: 123 MNACAV-ESP-TLLSISPYHHSNLIG--QALNYPAASSLINSSHFYSSKPESAASFDKCK 178

Query: 206 ESAIEELDLELRLGQR 221
           E   EELDLELRLG R
Sbjct: 179 EMGSEELDLELRLGHR 194

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482391|ref|XP_003611481.1| Zinc finger (C2H2 type) containing protein [Medicago truncatula] gi|298201168|gb|ADI60286.1| PALMATE-LIKE PENTAFOLIATA1 [Medicago truncatula] gi|355512816|gb|AES94439.1| Zinc finger (C2H2 type) containing protein [Medicago truncatula]

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/217 (55%), Positives = 137/217 (63%), Gaps = 34/217 (15%)

Query: 34  WMLNQKR-EPQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNV 92
           WM N K+ + QED+DSWEVRAFAEDT NIM TTWPPRSYTCTFCRREFRSAQALGGHMNV
Sbjct: 44  WMWNPKQHQEQEDEDSWEVRAFAEDTRNIMNTTWPPRSYTCTFCRREFRSAQALGGHMNV 103

Query: 93  HRRDRARLHHHQAQPHASSSSSTLIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTAC 152
           HRRDRARLH  Q   ++S  SS  I    Q+  AN+G CLLY LPNPN   FAS   ++ 
Sbjct: 104 HRRDRARLHQTQPPLNSSHPSSPFINIPPQDLVANAGLCLLYHLPNPNNNAFASFN-SSS 162

Query: 153 AIDDSPSTLLSIS---PYPPNNLI----GLPPSTNFPV-----------------ASQCY 188
              +SPST LSIS    YPPNNL+       PS NF V                   Q +
Sbjct: 163 PNGESPSTFLSISSSTSYPPNNLMMQMQACSPSFNFQVDNSARLINNSISSFSSKVDQQH 222

Query: 189 STKDPLGSINDNSNACNESAIEELDLELRLGQRPTPT 225
           +T     SI+DN +      IEELDLELRLG +PTPT
Sbjct: 223 AT---CTSIDDNGH-----EIEELDLELRLGNKPTPT 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298201170|gb|ADI60287.1| PALMATE-LIKE PENTAFOLIATA1 [Medicago sativa]

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/212 (54%), Positives = 130/212 (61%), Gaps = 21/212 (9%)

Query: 34  WMLNQKREPQEDDD----SWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGH 89
           WM N K+  Q+ +     SWEVRAFAEDT NIM TTWPPRSYTCTFCRREFRSAQALGGH
Sbjct: 44  WMWNPKQHQQQQEQEDEDSWEVRAFAEDTRNIMNTTWPPRSYTCTFCRREFRSAQALGGH 103

Query: 90  MNVHRRDRARLHHHQAQPHASSSSSTLIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTM 149
           MNVHRRDRARLH  Q   ++S  SS  I    QE  AN+G CLLY LPNPN   FAS   
Sbjct: 104 MNVHRRDRARLHQSQPPLNSSHPSSPFINIPPQELVANAGLCLLYHLPNPNNNAFASYN- 162

Query: 150 TACAIDDSPSTLLSIS---PYPPNNLI----GLPPSTNFPVASQC----YSTKDPLGSIN 198
           ++    +SPST LSIS    YPPNNL+       PS NF V +       S       ++
Sbjct: 163 SSSPNGESPSTFLSISSSTSYPPNNLMMQMQTCSPSFNFQVDNSARLINNSISSFSSKVD 222

Query: 199 DNSNAC-----NESAIEELDLELRLGQRPTPT 225
                C     N   IEELDLELRLG +PTPT
Sbjct: 223 HQHATCTSIDDNGHEIEELDLELRLGNKPTPT 254

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742106|emb|CBI33893.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 129/193 (66%), Gaps = 39/193 (20%)

Query: 43  QEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHH 102
           QEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL  
Sbjct: 74  QEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL-- 131

Query: 103 HQAQP--------HASSSSSTLIIPTTQEFTANSGYCLLYQL-PNPNGGVFASTTMTACA 153
           HQ  P         +++SSSTLIIP TQEF  N G CLLYQL PNPN  +F  T++ +C 
Sbjct: 132 HQTHPGSNNPTSSSSTNSSSTLIIP-TQEFITNGGLCLLYQLPPNPN-ALFTPTSINSC- 188

Query: 154 IDDSPSTLLSISPYPPNNLIGLPPSTNFPVASQCYSTKDPLGSINDN-SNACNESAIEEL 212
                              I L PS+  P  S   +  D     N+N SN  N+SA+EEL
Sbjct: 189 -------------------IALCPSSK-PEPSAVSNGDDD----NENTSNNYNDSAMEEL 224

Query: 213 DLELRLGQRPTPT 225
           DLELRLG RP+P+
Sbjct: 225 DLELRLGHRPSPS 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495535|ref|XP_003516632.1| PREDICTED: probable transcriptional regulator RABBIT EARS-like [Glycine max]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/254 (47%), Positives = 146/254 (57%), Gaps = 34/254 (13%)

Query: 1   MAPELGLLSSTQHKKLAQSQQNQPSPSLSPGKT---------WMLNQKREPQEDDD---- 47
           MA E+GL+S TQ + L+Q+Q  +      P            WM N + + Q+  +    
Sbjct: 1   MAAEIGLVSMTQIQNLSQTQHPKNPQPPQPKNPNTTTTSSSTWMWNPREQQQQQVEDDDD 60

Query: 48  SWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQAQP 107
           SWEVRAFAEDT NIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL  HQA P
Sbjct: 61  SWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL--HQAPP 118

Query: 108 HASSSSSTLIIPTT-------QEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPST 160
            + S+  +  +PT+       QE   N+G CLLY LP          + T+     SPST
Sbjct: 119 SSCSNPMSSSLPTSSFINIPPQELVGNAGLCLLYHLPTSPSSAPPFPSPTSNG--ASPST 176

Query: 161 LLSISPYPPNNLIGLPPSTNFPVASQCYSTKDPLGSINDNSNACNESAI-EELD------ 213
           LLSIS YP NN + +  S NFP A         + S+  NS+   +SA    +D      
Sbjct: 177 LLSISSYPTNNFL-MQTSFNFPGAPPTGINTTTVSSLCYNSSKVEQSATSSSIDNGHLEE 235

Query: 214 --LELRLGQRPTPT 225
             LELRLG +PTPT
Sbjct: 236 LDLELRLGHKPTPT 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2129495	204	AT4G17810 "AT4G17810" [Arabido	0.804	0.887	0.438	5.4e-31
TAIR|locus:2040726	304	ZFP10 "AT2G37740" [Arabidopsis	0.537	0.398	0.455	3.9e-24
TAIR|locus:505006582	226	RBE "AT5G06070" [Arabidopsis t	0.226	0.225	0.735	2e-23
TAIR|locus:2053796	214	ZFP11 "AT2G42410" [Arabidopsis	0.155	0.163	0.885	9.3e-21
TAIR|locus:2086268	204	SUP "AT3G23130" [Arabidopsis t	0.684	0.754	0.359	2.8e-18
TAIR|locus:2083574	172	TAC1 "AT3G09290" [Arabidopsis	0.142	0.186	0.75	3e-14
TAIR|locus:2084390	142	AT3G53820 "AT3G53820" [Arabido	0.142	0.225	0.687	7.4e-12
TAIR|locus:2158367	137	AT5G43540 "AT5G43540" [Arabido	0.128	0.211	0.758	1.2e-11
TAIR|locus:2086193	172	URO "AT3G23140" [Arabidopsis t	0.182	0.238	0.488	4.7e-06
TAIR|locus:2825107	209	ZFP7 "AT1G24625" [Arabidopsis	0.133	0.143	0.6	2.3e-05

TAIR|locus:2129495 AT4G17810 "AT4G17810" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 93/212 (43%), Positives = 114/212 (53%)

Query:    31 GKTWMLNQKR--EPQEDDDSWEVRAFAEDT-GNIMGTTWPPRSYTCTFCRREFRSAQALG 87
             G  WM N  +  E ++DD+SWEV+AF +DT GNI GTTWPPRSYTC FCRREFRSAQALG
Sbjct:     3 GGAWMWNPNKIEELEDDDESWEVKAFEQDTKGNISGTTWPPRSYTCNFCRREFRSAQALG 62

Query:    88 GHMNVHRRDRARLXXXXXXXXXXXXXX----TLI------IPTTQ---EFTANS--GYCL 132
             GHMNVHRRDRA                     L+      +PTT    + TA++  G   
Sbjct:    63 GHMNVHRRDRASSRAHQGSTVAAAARSGHGGMLLNSCAPPLPTTTLIIQSTASNIEGLSH 122

Query:   133 LYQLPNPNGGVFASTTMTACAIDDSPSTLLSISPYPPNNL--IGLPPSTNFPVASQCYST 190
              YQL NP+G +F ++        D  + L   + +PP+NL    L      P     YST
Sbjct:   123 FYQLQNPSG-IFGNS-------GDMVN-LYGTTSFPPSNLPFSMLNSPVEVPPRLIEYST 173

Query:   191 KDPLGSINDNSNACNESAIEELDLELRLGQRP 222
              D   SI     A   S ++ELDLELRLG  P
Sbjct:   174 GDD-ESIGSMKEATGTS-VDELDLELRLGHHP 203

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2040726 ZFP10 "AT2G37740" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 62/136 (45%), Positives = 77/136 (56%)

Query:    46 DDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLXXXXX 105
             + SWE  AFAED  +  G+ WPPRSYTC+FCRREF+SAQALGGHMNVHRRDRARL     
Sbjct:    16 ESSWEELAFAED--DAAGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRARLKQADD 73

Query:   106 XXXXXXXXXTLIIPTTQE---FTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSPSTLL 162
                      +   P+ ++       S Y L++    PN   F   T  +C ID S S+ L
Sbjct:    74 QYLFPKSSSSPEYPSHKDSDNIHETSCYTLVFNT-KPN--YFK--TQHSCVIDLSSSSSL 128

Query:   163 SISPY-PPNNLI-GLP 176
                PY  P+ +  GLP
Sbjct:   129 ---PYLTPSRVSSGLP 141

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:505006582 RBE "AT5G06070" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
 Identities = 39/53 (73%), Positives = 43/53 (81%)

Query:    50 EVRAFA--EDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL 100
             E RAFA  E+ G   G  WPPRSY+C+FC REF+SAQALGGHMNVHRRDRARL
Sbjct:    32 EERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARL 84

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009934 "regulation of meristem structural organization" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048441 "petal development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

GO:0009409 "response to cold" evidence=IEP

TAIR|locus:2053796 ZFP11 "AT2G42410" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 9.3e-21, Sum P(3) = 9.3e-21
 Identities = 31/35 (88%), Positives = 35/35 (100%)

Query:    66 WPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL 100
             WPP++YTC+FCRREFRSAQALGGHMNVHRRDRA+L
Sbjct:    44 WPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKL 78

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2086268 SUP "AT3G23130" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 65/181 (35%), Positives = 85/181 (46%)

Query:    56 EDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLXXXXXXXXXXXXXXT 115
             +D   ++G +WPPRSYTC+FC+REFRSAQALGGHMNVHRRDRARL               
Sbjct:    32 QDHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSST---- 87

Query:   116 LIIPTTQEFTANSGYCLLYQLPNPNGGVFASTTMTACAIDDSP----STLLSISP---YP 168
                P+      N  Y  +   P P+      T     +   SP      + S+SP   + 
Sbjct:    88 ---PSPPYPNPNYSYSTMANSPPPHHSPL--TLFPTLSPPSSPRYRAGLIRSLSPKSKHT 142

Query:   169 PNN---------LIGLPPSTNFPVASQCYSTK-DPLGSINDNSNACNESAIEELDLELRL 218
             P N         L+    +T F     C   + D + S+       NES  ++LDLELRL
Sbjct:   143 PENACKTKKSSLLVEAGEATRFTSKDACKILRNDEIISLELEIGLINESE-QDLDLELRL 201

Query:   219 G 219
             G
Sbjct:   202 G 202

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP;TAS

GO:0003677 "DNA binding" evidence=IDA;TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0009755 "hormone-mediated signaling pathway" evidence=IMP

GO:0010160 "formation of organ boundary" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IGI;RCA

GO:0048440 "carpel development" evidence=RCA

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2083574 TAC1 "AT3G09290" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
 Identities = 24/32 (75%), Positives = 28/32 (87%)

Query:    69 RSYTCTFCRREFRSAQALGGHMNVHRRDRARL 100
             RSY C+FC R F +AQALGGHMN+HRRDRA+L
Sbjct:    33 RSYVCSFCIRGFSNAQALGGHMNIHRRDRAKL 64

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0051973 "positive regulation of telomerase activity" evidence=IGI

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2084390 AT3G53820 "AT3G53820" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query:    69 RSYTCTFCRREFRSAQALGGHMNVHRRDRARL 100
             R Y C FC R F +AQALGGHMN+HR+DRA+L
Sbjct:    19 RPYICEFCERGFSNAQALGGHMNIHRKDRAKL 50

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2158367 AT5G43540 "AT5G43540" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 22/29 (75%), Positives = 25/29 (86%)

Query:    69 RSYTCTFCRREFRSAQALGGHMNVHRRDR 97
             R Y CTFC+R F +AQALGGHMN+HRRDR
Sbjct:    33 RMYECTFCKRGFTNAQALGGHMNIHRRDR 61

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2086193 URO "AT3G23140" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query:    57 DTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR 99
             D+G+  G     R+Y C  C+R F + QALGGH N+HRR+R R
Sbjct:     9 DSGSGSGEN--RRTYDCDICKRGFTNPQALGGHNNIHRRERER 49

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010252 "auxin homeostasis" evidence=IMP

TAIR|locus:2825107 ZFP7 "AT1G24625" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 18/30 (60%), Positives = 25/30 (83%)

Query:    68 PRSYTCTFCRREFRSAQALGGHMNVHRRDR 97
             PR ++C +CRR+F S+QALGGH N H+R+R
Sbjct:    56 PRVFSCNYCRRKFYSSQALGGHQNAHKRER 85

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	2e-04

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 71 YTCTFCRREFRSAQALGGHMNVHRR 95
          +TC  C + F S QALGGH   H  
Sbjct: 2  HTCGVCGKTFSSLQALGGHKKSHCS 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	98.4
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	98.36
PHA02768	55	hypothetical protein; Provisional	98.09
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.97
PHA00616	44	hypothetical protein	97.94
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	97.91
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	97.89
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.81
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	97.68
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.62
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.58
smart00355	26	ZnF_C2H2 zinc finger.	97.37
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	97.33
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.86
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.85
KOG3576	267	consensus Ovo and related transcription factors [T	96.77
PHA00732	79	hypothetical protein	96.4
PHA00733	128	hypothetical protein	95.99
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.68
KOG3576	267	consensus Ovo and related transcription factors [T	95.63
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.92
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.53
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.01
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.78
PHA00733	128	hypothetical protein	92.99
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	92.69
KOG3993	500	consensus Transcription factor (contains Zn finger	92.13
KOG2893	341	consensus Zn finger protein [General function pred	91.42
PHA02768	55	hypothetical protein; Provisional	89.95
KOG3608	467	consensus Zn finger proteins [General function pre	88.05
KOG3993	500	consensus Transcription factor (contains Zn finger	87.11
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	85.8
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	85.72
COG5189	423	SFP1 Putative transcriptional repressor regulating	83.99
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	83.9
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	83.24
PLN03086	567	PRLI-interacting factor K; Provisional	82.34
PRK04860	160	hypothetical protein; Provisional	82.18
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	81.51

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=98.40  E-value=1.2e-07  Score=86.67  Aligned_cols=37  Identities=22%  Similarity=0.524  Sum_probs=31.9

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ++||+|||||.|..|+|.|.-+++|.-||++|.+.|+
T Consensus       207 iRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~  243 (279)
T KOG2462|consen  207 IRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKK  243 (279)
T ss_pred             cccccCCCCccCCcccchhcchHHHHHHHHhhcCCcc
Confidence            4788889999999999999999999999999888874

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=98.36  E-value=1.2e-07  Score=96.84  Aligned_cols=40  Identities=28%  Similarity=0.510  Sum_probs=36.2

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchhc
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL  100 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~~  100 (225)
                      -++||+|||||+|++|||.|..+-+|+-||-+|+..-+..
T Consensus       624 HyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R  663 (958)
T KOG1074|consen  624 HYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPAR  663 (958)
T ss_pred             hhhcccCcCccccccccchhccccchhhcccccccCcccc
Confidence            4689999999999999999999999999999999875543

>PHA02768 hypothetical protein; Provisional

Probab=98.09  E-value=1.4e-06  Score=62.81  Aligned_cols=25  Identities=20%  Similarity=0.595  Sum_probs=24.2

Q ss_pred             ceeCCccccccCCchhHHHHhhhcC
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      .|+|+.|||.|.+.++|.+|||+|+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC
Confidence            5899999999999999999999999

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.97  E-value=2.8e-06  Score=49.10  Aligned_cols=23  Identities=39%  Similarity=0.853  Sum_probs=22.0

Q ss_pred             eeCCccccccCCchhHHHHhhhc
Q 045333           71 YTCTFCRREFRSAQALGGHMNVH   93 (225)
Q Consensus        71 y~C~~CgK~FsS~qALgGHmr~H   93 (225)
                      |+|.+|+|.|.+...|..||+.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            79999999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00616 hypothetical protein

Probab=97.94  E-value=2.6e-06  Score=58.95  Aligned_cols=29  Identities=21%  Similarity=0.421  Sum_probs=27.7

Q ss_pred             ceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ||+|..||+.|..++.|..|++.|+++++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence            69999999999999999999999999975

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=97.91  E-value=3.3e-06  Score=77.32  Aligned_cols=31  Identities=23%  Similarity=0.548  Sum_probs=29.4

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+++|.+|||.|++..-|.||+|+||||||-
T Consensus       186 l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF  216 (279)
T KOG2462|consen  186 LPCECGICGKAFSRPWLLQGHIRTHTGEKPF  216 (279)
T ss_pred             CCcccccccccccchHHhhcccccccCCCCc
Confidence            5999999999999999999999999999983

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=97.89  E-value=3.9e-06  Score=85.42  Aligned_cols=36  Identities=22%  Similarity=0.573  Sum_probs=34.2

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -|+|.|||+|.+|.|.|..+.+|.-|||.|.||||.
T Consensus       916 EHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPf  951 (1007)
T KOG3623|consen  916 EHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPF  951 (1007)
T ss_pred             hhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcc
Confidence            578999999999999999999999999999999984

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.81  E-value=7.9e-06  Score=48.85  Aligned_cols=26  Identities=31%  Similarity=0.593  Sum_probs=24.4

Q ss_pred             ceeCCccccccCCchhHHHHhhhcCC
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      +|+|..|++.|.+..+|..||+.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            69999999999999999999999964

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=97.68  E-value=7.1e-05  Score=77.03  Aligned_cols=38  Identities=21%  Similarity=0.451  Sum_probs=29.5

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      .++.|+|||||+|++||..|+++-+|+-|...|+.+-|
T Consensus       372 HlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~~p  409 (958)
T KOG1074|consen  372 HLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREKYP  409 (958)
T ss_pred             hhhccCCCCCeeecccccccccccceeeeeeeccccCC
Confidence            34677888888888888888888888888888876654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.62  E-value=2.7e-05  Score=43.96  Aligned_cols=24  Identities=38%  Similarity=0.888  Sum_probs=20.5

Q ss_pred             eeCCccccccCCchhHHHHhhhcC
Q 045333           71 YTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        71 y~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      |.|.+|++.|.+...|..||+.|.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999873

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.58  E-value=8.2e-06  Score=49.62  Aligned_cols=20  Identities=25%  Similarity=0.740  Sum_probs=17.7

Q ss_pred             CCCCCCcceeCCccccccCC
Q 045333           63 GTTWPPRSYTCTFCRREFRS   82 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS   82 (225)
                      .+|+++|||+|++|+|.|.+
T Consensus         7 ~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    7 RTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHSSSSSEEESSSSEEESS
T ss_pred             hhcCCCCCCCCCCCcCeeCc
Confidence            36889999999999999974

...

>smart00355 ZnF_C2H2 zinc finger

Probab=97.37  E-value=9.8e-05  Score=41.72  Aligned_cols=25  Identities=40%  Similarity=0.784  Sum_probs=23.0

Q ss_pred             eeCCccccccCCchhHHHHhhhcCC
Q 045333           71 YTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        71 y~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      |+|..|++.|.....|..|++.|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~~   25 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHXX   25 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhcc
Confidence            6899999999999999999998853

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=97.33  E-value=6.1e-05  Score=76.97  Aligned_cols=33  Identities=24%  Similarity=0.578  Sum_probs=30.5

Q ss_pred             CCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .-|.|+|..|||.|.-+.+|+-|.|+|.||||.
T Consensus       278 ~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPf  310 (1007)
T KOG3623|consen  278 LLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPF  310 (1007)
T ss_pred             hhccccccccchhhhhHHHHHhhheeecCCCCc
Confidence            458999999999999999999999999999984

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.86  E-value=0.00057  Score=49.31  Aligned_cols=34  Identities=18%  Similarity=0.428  Sum_probs=24.6

Q ss_pred             CCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           66 WPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        66 ~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -.+.|..|++|++.+++..+|.+||.++++.||.
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~~   53 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKPG   53 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS--
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccCC
Confidence            3578999999999999999999999988888763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.85  E-value=0.00038  Score=40.77  Aligned_cols=24  Identities=25%  Similarity=0.758  Sum_probs=22.1

Q ss_pred             eeCCccccccCCchhHHHHhhhcC
Q 045333           71 YTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        71 y~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      |.|++|++.|.+...|..|++.|+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~   24 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKK   24 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCC
Confidence            789999999999999999998763

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=96.77  E-value=0.00028  Score=63.60  Aligned_cols=39  Identities=23%  Similarity=0.373  Sum_probs=30.9

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|..-|-|-|.+|||.|...-.|++|+|+|+|.||.
T Consensus       136 h~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpy  174 (267)
T KOG3576|consen  136 HLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPY  174 (267)
T ss_pred             HhhhccHHHHHHHhhccCcccchhhhhhhhccccCcccc
Confidence            456777777888888888888888888888888888874

>PHA00732 hypothetical protein

Probab=96.40  E-value=0.0017  Score=49.21  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=24.0

Q ss_pred             ceeCCccccccCCchhHHHHhh-hcCCc
Q 045333           70 SYTCTFCRREFRSAQALGGHMN-VHRRD   96 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr-~HtgE   96 (225)
                      ||+|..|++.|.+..+|..||+ .|++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~   28 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTLT   28 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCCC
Confidence            6899999999999999999998 47653

>PHA00733 hypothetical protein

Probab=95.99  E-value=0.0041  Score=50.58  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=26.3

Q ss_pred             CCCcceeCCccccccCCchhHHHHhhhcC
Q 045333           66 WPPRSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        66 ~geKpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      .++++|.|..|++.|.+...|..|++.|.
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~   97 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSVSLKQHIRYTE   97 (128)
T ss_pred             CCCCCccCCCCCCcCCCHHHHHHHHhcCC
Confidence            35899999999999999999999999873

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.68  E-value=0.0033  Score=37.99  Aligned_cols=24  Identities=29%  Similarity=0.638  Sum_probs=21.3

Q ss_pred             ceeCCccccccCCchhHHHHhhhc
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVH   93 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~H   93 (225)
                      .|-|.+|+|.|.+..+|..||+.+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccC
Confidence            378999999999999999999863

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=95.63  E-value=0.0041  Score=56.22  Aligned_cols=37  Identities=22%  Similarity=0.429  Sum_probs=31.7

Q ss_pred             cCcCCCCCCCcceeCCccccccCCchhHHHHhhhcCC
Q 045333           59 GNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        59 ~~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      ..-+.||+|-|||+|..|+|.|..+-.|..|.+.-.|
T Consensus       162 krh~rthtgvrpykc~~c~kaftqrcsleshl~kvhg  198 (267)
T KOG3576|consen  162 KRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHG  198 (267)
T ss_pred             hhhhccccCccccchhhhhHHHHhhccHHHHHHHHcC
Confidence            3456899999999999999999999999999764333

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.92  E-value=0.015  Score=42.19  Aligned_cols=25  Identities=40%  Similarity=0.911  Sum_probs=22.2

Q ss_pred             cceeCCccccccCCchhHHHHhhhc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVH   93 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~H   93 (225)
                      +.+.|.+|++.|.+..+|..||+.+
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCCccCCCCcCHHHHHHHHcCc
Confidence            3799999999999999999999975

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.53  E-value=0.017  Score=33.65  Aligned_cols=23  Identities=26%  Similarity=0.613  Sum_probs=19.0

Q ss_pred             eeCCccccccCCchhHHHHhhhcC
Q 045333           71 YTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        71 y~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      |+|+.|.-... ...|..|++.|.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            79999999998 999999999864

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.01  E-value=0.029  Score=34.11  Aligned_cols=21  Identities=29%  Similarity=0.738  Sum_probs=18.7

Q ss_pred             eeCCccccccCCchhHHHHhhh
Q 045333           71 YTCTFCRREFRSAQALGGHMNV   92 (225)
Q Consensus        71 y~C~~CgK~FsS~qALgGHmr~   92 (225)
                      ..|.+|||.| ...+|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 88999999875

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.78  E-value=0.036  Score=34.35  Aligned_cols=23  Identities=17%  Similarity=0.598  Sum_probs=21.1

Q ss_pred             ceeCCccccccCCchhHHHHhhh
Q 045333           70 SYTCTFCRREFRSAQALGGHMNV   92 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~   92 (225)
                      +|.|.+|++.|.+..++..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            68999999999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PHA00733 hypothetical protein

Probab=92.99  E-value=0.06  Score=43.80  Aligned_cols=28  Identities=25%  Similarity=0.523  Sum_probs=24.3

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCC
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      +++|+|.+|+|.|....+|..|++-..+
T Consensus        97 ~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         97 EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            4689999999999999999999976543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=92.69  E-value=0.06  Score=32.56  Aligned_cols=15  Identities=27%  Similarity=0.468  Sum_probs=13.3

Q ss_pred             hHHHHhhhcCCcchh
Q 045333           85 ALGGHMNVHRRDRAR   99 (225)
Q Consensus        85 ALgGHmr~HtgERp~   99 (225)
                      +|..||++|+++||.
T Consensus         1 ~l~~H~~~H~~~k~~   15 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPY   15 (26)
T ss_dssp             HHHHHHHHHSSSSSE
T ss_pred             CHHHHhhhcCCCCCC
Confidence            589999999999973

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=92.13  E-value=0.065  Score=52.55  Aligned_cols=26  Identities=27%  Similarity=0.627  Sum_probs=24.8

Q ss_pred             ceeCCccccccCCchhHHHHhhhcCC
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      .|+|..|+|.|...-+|-.|.|.|+-
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHKP  320 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHKP  320 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccCC
Confidence            79999999999999999999999964

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=91.42  E-value=0.037  Score=51.30  Aligned_cols=36  Identities=25%  Similarity=0.564  Sum_probs=29.9

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHH-hhhcCC
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGH-MNVHRR   95 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGH-mr~Htg   95 (225)
                      .|+--|-..|-|+|.+|.|+..+..-|..| |++|+.
T Consensus        24 kiliqhqkakhfkchichkkl~sgpglsihcmqvhke   60 (341)
T KOG2893|consen   24 KILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQVHKE   60 (341)
T ss_pred             hhhhhhhhhccceeeeehhhhccCCCceeehhhhhhh
Confidence            444456678999999999999999999999 778864

>PHA02768 hypothetical protein; Provisional

Probab=89.95  E-value=0.092  Score=37.99  Aligned_cols=24  Identities=8%  Similarity=0.027  Sum_probs=19.8

Q ss_pred             CCCCCCCcceeCCccccccCCchhHH
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALG   87 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALg   87 (225)
                      +.+|+  |+|+|..|+|.|...+.|-
T Consensus        25 ~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768         25 LRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             HHhcC--CcccCCcccceecccceeE
Confidence            45676  7999999999999887763

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=88.05  E-value=0.26  Score=47.87  Aligned_cols=37  Identities=19%  Similarity=0.371  Sum_probs=31.6

Q ss_pred             cCcCCCCCCCcceeCCccccccCCchhHHHHhhhcCC
Q 045333           59 GNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        59 ~~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      ..++-.|...|||+|+.|++.|.+-..|.+|..+|+.
T Consensus       281 ~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~  317 (467)
T KOG3608|consen  281 THIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSK  317 (467)
T ss_pred             HHHHhhhccCCCccccchhhhhccHHHHHHHHHhccc
Confidence            3455567789999999999999999999999999984

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=87.11  E-value=0.24  Score=48.74  Aligned_cols=29  Identities=28%  Similarity=0.610  Sum_probs=25.3

Q ss_pred             CCcceeCCccccccCCchhHHHHhhhcCC
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      .+-.|.|.+|+|+|++.-.|++|+-+|..
T Consensus       353 s~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  353 SSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             cCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence            34599999999999999999999877753

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.80  E-value=0.53  Score=30.86  Aligned_cols=27  Identities=19%  Similarity=0.568  Sum_probs=17.7

Q ss_pred             CCcceeCCccccccCCc----hhHHHHh-hhc
Q 045333           67 PPRSYTCTFCRREFRSA----QALGGHM-NVH   93 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~----qALgGHm-r~H   93 (225)
                      +.+..+|++|++.|...    ..|..|+ +.|
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            35678999999999985    7888898 444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=85.72  E-value=0.54  Score=32.48  Aligned_cols=27  Identities=37%  Similarity=0.835  Sum_probs=20.6

Q ss_pred             ceeCCccccccCCchhHHHHh-hhcCCcc
Q 045333           70 SYTCTFCRREFRSAQALGGHM-NVHRRDR   97 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHm-r~HtgER   97 (225)
                      .|.|++|++.| +...|..|. ..|..++
T Consensus         2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~~~   29 (54)
T PF05605_consen    2 SFTCPYCGKGF-SESSLVEHCEDEHRSES   29 (54)
T ss_pred             CcCCCCCCCcc-CHHHHHHHHHhHCcCCC
Confidence            58999999955 568899996 5666553

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=83.99  E-value=0.34  Score=46.49  Aligned_cols=24  Identities=21%  Similarity=0.654  Sum_probs=21.7

Q ss_pred             CCcceeCCccccccCCchhHHHHh
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHM   90 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHm   90 (225)
                      ..|||+|.+|+|.+..-.-|+-|.
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             cCCceeccccchhhccCccceecc
Confidence            469999999999999999998885

>smart00614 ZnF_BED BED zinc finger

Probab=83.90  E-value=0.64  Score=31.71  Aligned_cols=25  Identities=20%  Similarity=0.612  Sum_probs=20.5

Q ss_pred             ceeCCccccccCCc-----hhHHHHhh-hcC
Q 045333           70 SYTCTFCRREFRSA-----QALGGHMN-VHR   94 (225)
Q Consensus        70 py~C~~CgK~FsS~-----qALgGHmr-~Ht   94 (225)
                      .=.|++|++.++..     .+|..|++ .|.
T Consensus        18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~   48 (50)
T smart00614       18 RAKCKYCGKKLSRSSKGGTSNLRRHLRRKHP   48 (50)
T ss_pred             EEEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence            45899999999876     58999988 564

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=83.24  E-value=0.75  Score=31.77  Aligned_cols=26  Identities=23%  Similarity=0.561  Sum_probs=21.0

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCC
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      .+.+.|++|.+.+..  .|..||+.+.+
T Consensus        29 ~~~v~CPiC~~~~~~--~l~~Hl~~~H~   54 (54)
T PF05605_consen   29 SKNVVCPICSSRVTD--NLIRHLNSQHR   54 (54)
T ss_pred             CCCccCCCchhhhhh--HHHHHHHHhcC
Confidence            357999999997664  99999987653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=82.34  E-value=0.81  Score=46.09  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ++|.|+ |++.| .+..|..|++.|..+|+
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kp  504 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRL  504 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhccCCCCc
Confidence            678888 88655 55788888888887776

>PRK04860 hypothetical protein; Provisional

Probab=82.18  E-value=0.76  Score=39.08  Aligned_cols=27  Identities=22%  Similarity=0.468  Sum_probs=23.7

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+|.|. |++   ....+..|+++|+++++.
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~Y  144 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVY  144 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccE
Confidence            379998 998   888899999999999863

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=81.51  E-value=0.46  Score=34.28  Aligned_cols=24  Identities=33%  Similarity=0.652  Sum_probs=0.0

Q ss_pred             eCCccccccCCchhHHHHhhhcCC
Q 045333           72 TCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        72 ~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      +|.+|+..|.+...|..||+...+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~   24 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHG   24 (100)
T ss_dssp             ------------------------
T ss_pred             Cccccccccccccccccccccccc
Confidence            599999999999999999965444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
2l1o_A	39	Zinc To Cadmium Replacement In The A. Thaliana Supe		4e-11

>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman Cys2his2 Zinc Finger Induces Structural Rearrangements Of Typical Dna Base Determinant Positions Length = 39

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/28 (92%), Positives = 28/28 (100%)
Query: 66 WPPRSYTCTFCRREFRSAQALGGHMNVH 93
          WPPRSYTC+FC+REFRSAQALGGHMNVH
Sbjct: 2  WPPRSYTCSFCKREFRSAQALGGHMNVH 29

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	3e-20

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 79.4 bits (196), Expect = 3e-20
 Identities = 33/35 (94%), Positives = 35/35 (100%)

Query: 66  WPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL 100
           WPPRSYTC+FC+REFRSAQALGGHMNVHRRDRARL
Sbjct: 2   WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.14
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.12
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.11
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.02
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.01
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.01
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.0
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.0
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.0
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.99
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.99
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.99
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.99
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.99
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.99
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.98
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.97
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.97
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.96
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.96
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.96
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.96
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.95
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.94
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.92
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.91
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.91
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.89
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.87
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.86
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.84
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.83
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.82
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.8
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.8
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.79
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.78
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.78
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.76
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.75
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.23
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.74
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.74
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.73
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.18
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.71
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.69
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.69
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.68
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.67
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.67
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.66
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.65
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.64
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.64
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.63
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.61
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.6
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.59
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.59
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.54
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.53
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.53
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.53
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.51
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.89
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.48
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.44
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.43
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.41
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.38
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.37
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.37
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.36
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.34
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.34
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.32
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.3
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	98.3
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	98.3
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.3
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.29
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.27
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.27
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.24
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.24
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.23
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.21
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.18
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.17
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	98.17
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.16
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.16
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.16
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.16
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.15
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.15
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.13
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.13
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.13
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.12
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	98.11
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.11
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.1
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.1
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	98.06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	98.05
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.02
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	97.99
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	97.99
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	97.99
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	97.98
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	97.97
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.97
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	97.96
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.95
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.93
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.9
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	97.89
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	97.88
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.87
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	97.87
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.86
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.84
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	97.79
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.78
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.74
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	97.74
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.72
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	97.72
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	97.68
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	97.67
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.67
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	97.62
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	97.59
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	97.54
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.51
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	97.34
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.14
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.06
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	97.05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	96.78
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	96.54
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.46
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	96.25
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	94.73
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.45
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.46
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	88.32
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.82
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	87.77
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.52
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.49
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.44
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.38
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.34
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.12
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.11
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.09
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	86.87
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.52
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.3
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.21
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	86.15
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.03
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	85.54
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	85.48
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.3
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.2
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	85.13
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.97
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	84.86
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.85
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	84.49
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.48
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	84.42
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	84.07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	83.86
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	82.81
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.61
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	81.08

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.8e-11  Score=73.22  Aligned_cols=36  Identities=19%  Similarity=0.557  Sum_probs=33.9

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      .+|+++|+|+|.+|+|.|..+..|..|+++|+++||
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            578899999999999999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.12  E-value=2.2e-11  Score=74.19  Aligned_cols=38  Identities=87%  Similarity=1.543  Sum_probs=34.5

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcchhccc
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHH  102 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~~~~  102 (225)
                      |+++|+|+|.+|+|.|.+...|..||++|+++|+..+|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            46899999999999999999999999999999987654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.11  E-value=3.2e-11  Score=71.30  Aligned_cols=35  Identities=20%  Similarity=0.470  Sum_probs=32.7

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|+++|+|+|.+|+|.|.....|..||++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            47789999999999999999999999999999875

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.11  E-value=3.1e-11  Score=70.91  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=32.7

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|+++|+|+|.+|+|.|.+...|..|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            46789999999999999999999999999999874

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.1e-10  Score=73.42  Aligned_cols=40  Identities=23%  Similarity=0.498  Sum_probs=36.5

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+.+|+++|+|+|.+|+|.|.++..|..||++|+++|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPS   41 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCC
Confidence            4467899999999999999999999999999999999874

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.1e-10  Score=73.64  Aligned_cols=40  Identities=18%  Similarity=0.300  Sum_probs=36.6

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ..+.+|+++|+|+|.+|+|.|.....|..||++|+++|+.
T Consensus         2 ~~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eom_A            2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCS
T ss_pred             CCCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCC
Confidence            3467899999999999999999999999999999999874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1e-10  Score=69.21  Aligned_cols=35  Identities=17%  Similarity=0.367  Sum_probs=32.6

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      .+|+++|+|+|.+|+|.|.....|..||++|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            36789999999999999999999999999999875

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.2e-10  Score=73.46  Aligned_cols=40  Identities=25%  Similarity=0.491  Sum_probs=36.4

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ..+.+|+++|+|+|.+|+|.|.++..|..||++|+++|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPS   41 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCC
Confidence            3457899999999999999999999999999999999864

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.4e-10  Score=69.08  Aligned_cols=35  Identities=26%  Similarity=0.576  Sum_probs=32.6

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      .+|+++|+|+|.+|++.|.+...|..||++|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            46889999999999999999999999999999875

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.7e-10  Score=72.53  Aligned_cols=39  Identities=26%  Similarity=0.465  Sum_probs=35.8

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSS   41 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCC
Confidence            356889999999999999999999999999999999863

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.8e-10  Score=71.93  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=35.4

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.....|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            4 GSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            46789999999999999999999999999999999864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.5e-10  Score=70.83  Aligned_cols=37  Identities=19%  Similarity=0.437  Sum_probs=34.4

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2yte_A            3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGP   39 (42)
T ss_dssp             SSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSC
T ss_pred             cCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            5788999999999999999999999999999998863

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.01  E-value=1.5e-10  Score=71.09  Aligned_cols=37  Identities=19%  Similarity=0.408  Sum_probs=34.5

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2el5_A            3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGP   39 (42)
T ss_dssp             SSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSC
T ss_pred             CCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCC
Confidence            5788999999999999999999999999999999863

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.4e-10  Score=69.50  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=32.6

Q ss_pred             CCCCCCcceeCCccccccCCc-hhHHHHhhhcCCcc
Q 045333           63 GTTWPPRSYTCTFCRREFRSA-QALGGHMNVHRRDR   97 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~-qALgGHmr~HtgER   97 (225)
                      .+|+++|+|+|.+|+|.|.+. ..|..||++|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            468899999999999999999 99999999999875

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.6e-10  Score=68.76  Aligned_cols=35  Identities=26%  Similarity=0.474  Sum_probs=32.3

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      ..|.++|+|+|.+|+|.|.....|..||++|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            35778999999999999999999999999999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.5e-10  Score=72.44  Aligned_cols=38  Identities=21%  Similarity=0.499  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ..+|+++|+|+|.+|+|.|.+...|..||++|+++|+.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSG   41 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999863

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.9e-10  Score=68.03  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=32.4

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      ..|.++|+|+|.+|+|.|.+...|..||++|++||
T Consensus         2 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            35788999999999999999999999999999875

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.00  E-value=2e-10  Score=72.17  Aligned_cols=40  Identities=20%  Similarity=0.393  Sum_probs=36.4

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ..+.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPS   41 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            3457889999999999999999999999999999999863

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=2.1e-10  Score=71.85  Aligned_cols=39  Identities=21%  Similarity=0.353  Sum_probs=35.9

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPS   41 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCS
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCC
Confidence            456889999999999999999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.7e-10  Score=70.68  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=34.4

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   39 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS   39 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCS
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCc
Confidence            4688999999999999999999999999999999863

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.99  E-value=1.7e-10  Score=70.56  Aligned_cols=38  Identities=18%  Similarity=0.366  Sum_probs=35.0

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         3 ~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~   40 (42)
T 2epc_A            3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS   40 (42)
T ss_dssp             CSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCC
T ss_pred             CccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCC
Confidence            35788999999999999999999999999999999863

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2e-10  Score=72.15  Aligned_cols=39  Identities=21%  Similarity=0.400  Sum_probs=35.9

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPS   41 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            356889999999999999999999999999999999874

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.5e-10  Score=71.72  Aligned_cols=40  Identities=18%  Similarity=0.353  Sum_probs=36.2

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +-+.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTS   41 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCC
Confidence            3456889999999999999999999999999999998863

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.1e-10  Score=72.11  Aligned_cols=38  Identities=21%  Similarity=0.418  Sum_probs=35.4

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPS   41 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCC
T ss_pred             ccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCC
Confidence            56789999999999999999999999999999999863

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.3e-10  Score=71.65  Aligned_cols=38  Identities=18%  Similarity=0.347  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2emg_A            4 GSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPS   41 (46)
T ss_dssp             CCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCS
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.2e-10  Score=71.97  Aligned_cols=39  Identities=15%  Similarity=0.412  Sum_probs=35.8

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPS   41 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCC
Confidence            356889999999999999999999999999999999874

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.99  E-value=2.7e-10  Score=71.55  Aligned_cols=39  Identities=18%  Similarity=0.390  Sum_probs=35.9

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCC
Confidence            356889999999999999999999999999999999863

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.7e-10  Score=70.63  Aligned_cols=38  Identities=24%  Similarity=0.478  Sum_probs=35.0

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS   40 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCC
Confidence            35788999999999999999999999999999999863

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.4e-10  Score=71.20  Aligned_cols=38  Identities=21%  Similarity=0.461  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS   40 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSS
T ss_pred             CcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCC
Confidence            45789999999999999999999999999999999863

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.9e-10  Score=70.85  Aligned_cols=38  Identities=26%  Similarity=0.612  Sum_probs=34.9

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS   40 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSST
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            35788999999999999999999999999999999863

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.2e-10  Score=71.78  Aligned_cols=38  Identities=18%  Similarity=0.405  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2enf_A            4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCC
T ss_pred             CcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCC
Confidence            46789999999999999999999999999999999874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.6e-10  Score=71.47  Aligned_cols=38  Identities=24%  Similarity=0.491  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emi_A            4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPS   41 (46)
T ss_dssp             CCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCC
T ss_pred             CcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCC
Confidence            46789999999999999999999999999999999863

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.9e-10  Score=70.99  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2en7_A            4 GSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGP   41 (44)
T ss_dssp             CCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSS
T ss_pred             CcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCC
Confidence            46789999999999999999999999999999999863

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.6e-10  Score=71.66  Aligned_cols=39  Identities=23%  Similarity=0.381  Sum_probs=35.8

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPS   41 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSS
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCC
Confidence            356889999999999999999999999999999999863

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.5e-10  Score=71.54  Aligned_cols=39  Identities=15%  Similarity=0.379  Sum_probs=35.8

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPS   41 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCC
Confidence            356889999999999999999999999999999999863

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.98  E-value=2.1e-10  Score=72.05  Aligned_cols=38  Identities=16%  Similarity=0.436  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSS
T ss_pred             CCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999874

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.6e-10  Score=71.43  Aligned_cols=39  Identities=13%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.....|..||++|+++++.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPS   41 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCC
Confidence            356889999999999999999999999999999999863

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.5e-10  Score=72.78  Aligned_cols=40  Identities=20%  Similarity=0.414  Sum_probs=36.4

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ..+.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         2 ~~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytt_A            2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPS   41 (46)
T ss_dssp             CCSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCC
T ss_pred             CCCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            4567899999999999999999999999999999998863

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2e-10  Score=72.33  Aligned_cols=40  Identities=18%  Similarity=0.364  Sum_probs=36.3

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +-+.+|.++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPS   41 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            3457889999999999999999999999999999999863

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.5e-10  Score=71.50  Aligned_cols=39  Identities=21%  Similarity=0.491  Sum_probs=35.8

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPS   41 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCC
Confidence            456889999999999999999999999999999999863

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.97  E-value=2.9e-10  Score=67.82  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      +.+|+++|+|+|.+|+|.|.....|..||++|+++
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            35788999999999999999999999999999875

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.3e-10  Score=71.08  Aligned_cols=38  Identities=18%  Similarity=0.420  Sum_probs=35.0

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPS   39 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            35788999999999999999999999999999999863

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.8e-10  Score=71.06  Aligned_cols=38  Identities=16%  Similarity=0.393  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPS   41 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSS
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            46788999999999999999999999999999999874

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3.3e-10  Score=70.36  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.....|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2yu5_A            4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP   41 (44)
T ss_dssp             SCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSS
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCC
Confidence            46789999999999999999999999999999999863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.4e-10  Score=71.41  Aligned_cols=38  Identities=21%  Similarity=0.461  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPS   41 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCS
T ss_pred             cCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCC
Confidence            45788999999999999999999999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.9e-10  Score=71.00  Aligned_cols=38  Identities=18%  Similarity=0.390  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ep1_A            4 GSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPS   41 (46)
T ss_dssp             CCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCC
T ss_pred             ccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            45788999999999999999999999999999999874

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.8e-10  Score=71.49  Aligned_cols=38  Identities=18%  Similarity=0.427  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emf_A            4 GSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPS   41 (46)
T ss_dssp             CSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCS
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.5e-10  Score=70.45  Aligned_cols=38  Identities=18%  Similarity=0.387  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eof_A            4 GSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGP   41 (44)
T ss_dssp             SSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCS
T ss_pred             ccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCC
Confidence            45789999999999999999999999999999999863

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.3e-10  Score=70.75  Aligned_cols=38  Identities=18%  Similarity=0.428  Sum_probs=35.4

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~   41 (46)
T 2yts_A            4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPS   41 (46)
T ss_dssp             SCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSS
T ss_pred             CCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCc
Confidence            46789999999999999999999999999999999874

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.8e-10  Score=70.88  Aligned_cols=39  Identities=18%  Similarity=0.278  Sum_probs=35.7

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+.+|+++|+|+|.+|+|.|.....|..||++|+++++.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGP   41 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCC
Confidence            356789999999999999999999999999999999863

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.6e-10  Score=71.41  Aligned_cols=38  Identities=21%  Similarity=0.463  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq2_A            4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPS   41 (46)
T ss_dssp             CCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            45789999999999999999999999999999999864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.5e-10  Score=70.67  Aligned_cols=38  Identities=18%  Similarity=0.330  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eoj_A            4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGP   41 (44)
T ss_dssp             CCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSC
T ss_pred             ccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999998763

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.7e-10  Score=67.80  Aligned_cols=35  Identities=20%  Similarity=0.666  Sum_probs=32.2

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      ..+.++|+|+|.+|+|.|.....|..||++|+++|
T Consensus         2 s~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CTTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            35678999999999999999999999999999875

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.9e-10  Score=71.02  Aligned_cols=38  Identities=21%  Similarity=0.404  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eq4_A            4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPS   41 (46)
T ss_dssp             CCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCC
T ss_pred             cccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCC
Confidence            46789999999999999999999999999999999863

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.96  E-value=2.9e-10  Score=71.02  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2el4_A            4 GSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPS   41 (46)
T ss_dssp             CCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCS
T ss_pred             ccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999863

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3e-10  Score=71.32  Aligned_cols=39  Identities=18%  Similarity=0.476  Sum_probs=35.8

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPS   41 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSS
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCC
Confidence            356789999999999999999999999999999999863

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.7e-10  Score=71.32  Aligned_cols=38  Identities=21%  Similarity=0.474  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq1_A            4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPS   41 (46)
T ss_dssp             CCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCS
T ss_pred             ccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999864

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.8e-10  Score=70.68  Aligned_cols=38  Identities=18%  Similarity=0.437  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytn_A            4 GSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPS   41 (46)
T ss_dssp             CCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCC
T ss_pred             CcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCC
Confidence            46789999999999999999999999999999999863

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.96  E-value=3.3e-10  Score=70.93  Aligned_cols=38  Identities=24%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.....|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em0_A            4 GSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPS   41 (46)
T ss_dssp             CCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCS
T ss_pred             cCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCc
Confidence            46789999999999999999999999999999999863

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.2e-10  Score=71.03  Aligned_cols=38  Identities=18%  Similarity=0.438  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yti_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPS   41 (46)
T ss_dssp             CCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCS
T ss_pred             CcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCC
Confidence            46789999999999999999999999999999999874

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.2e-10  Score=71.02  Aligned_cols=38  Identities=21%  Similarity=0.494  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eml_A            4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS   41 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCS
T ss_pred             cCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCC
Confidence            46789999999999999999999999999999999863

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.8e-10  Score=71.50  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yto_A            4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHS   41 (46)
T ss_dssp             CCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBT
T ss_pred             ccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999874

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.8e-10  Score=71.29  Aligned_cols=39  Identities=23%  Similarity=0.410  Sum_probs=35.9

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPS   41 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSS
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCC
Confidence            456889999999999999999999999999999999863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.4e-10  Score=71.07  Aligned_cols=38  Identities=18%  Similarity=0.433  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yth_A            4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPS   41 (46)
T ss_dssp             CSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCS
T ss_pred             ccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            45788999999999999999999999999999999864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3e-10  Score=70.93  Aligned_cols=38  Identities=18%  Similarity=0.406  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eoe_A            4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPS   41 (46)
T ss_dssp             SSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSC
T ss_pred             CCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999863

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.8e-10  Score=71.27  Aligned_cols=38  Identities=18%  Similarity=0.469  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPS   41 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            45789999999999999999999999999999999874

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.5e-10  Score=70.64  Aligned_cols=38  Identities=21%  Similarity=0.266  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2epw_A            4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHS   41 (46)
T ss_dssp             CCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCS
T ss_pred             cccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            45789999999999999999999999999999999863

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.2e-10  Score=70.80  Aligned_cols=38  Identities=16%  Similarity=0.260  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eop_A            4 GSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPS   41 (46)
T ss_dssp             CCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCS
T ss_pred             ccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            45789999999999999999999999999999999863

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.7e-10  Score=71.34  Aligned_cols=38  Identities=18%  Similarity=0.416  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ep3_A            4 GSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPS   41 (46)
T ss_dssp             CSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCC
T ss_pred             CCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.2e-10  Score=70.78  Aligned_cols=38  Identities=18%  Similarity=0.426  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yrj_A            4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSS
T ss_pred             ccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.95  E-value=3.4e-10  Score=71.09  Aligned_cols=38  Identities=21%  Similarity=0.420  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|..+..|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emk_A            4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPS   41 (46)
T ss_dssp             CCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCS
T ss_pred             CCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999863

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.7e-10  Score=70.72  Aligned_cols=38  Identities=21%  Similarity=0.432  Sum_probs=35.4

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytd_A            4 GSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPS   41 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSS
T ss_pred             ccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCC
Confidence            56789999999999999999999999999999999863

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.6e-10  Score=70.77  Aligned_cols=38  Identities=21%  Similarity=0.447  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq0_A            4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPS   41 (46)
T ss_dssp             CCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCS
T ss_pred             CcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.7e-10  Score=70.11  Aligned_cols=38  Identities=18%  Similarity=0.371  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.....|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2emb_A            4 GSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGP   41 (44)
T ss_dssp             CSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCT
T ss_pred             ccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            46789999999999999999999999999999999863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.2e-10  Score=70.64  Aligned_cols=38  Identities=24%  Similarity=0.542  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|.++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPS   41 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999874

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.3e-10  Score=70.95  Aligned_cols=38  Identities=18%  Similarity=0.415  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytj_A            4 GSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPS   41 (46)
T ss_dssp             SCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCS
T ss_pred             ccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999863

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3e-10  Score=71.35  Aligned_cols=39  Identities=18%  Similarity=0.365  Sum_probs=35.8

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLS   41 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCC
Confidence            456889999999999999999999999999999998863

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.4e-10  Score=71.77  Aligned_cols=39  Identities=23%  Similarity=0.550  Sum_probs=35.7

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.....|..||++|+++++.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSS   41 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            356889999999999999999999999999999998863

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.4e-10  Score=70.88  Aligned_cols=38  Identities=18%  Similarity=0.482  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ep2_A            4 GSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPS   41 (46)
T ss_dssp             SSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSC
T ss_pred             CCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            46788999999999999999999999999999999864

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.5e-10  Score=70.84  Aligned_cols=38  Identities=18%  Similarity=0.440  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoq_A            4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPS   41 (46)
T ss_dssp             CCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSS
T ss_pred             CCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCC
Confidence            45788999999999999999999999999999999863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=4.6e-10  Score=70.49  Aligned_cols=38  Identities=18%  Similarity=0.454  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCC-cchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRR-DRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~Htg-ERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.....|..||++|++ +++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSG   42 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTS
T ss_pred             ccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCC
Confidence            5678999999999999999999999999999999 8763

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.9e-10  Score=71.45  Aligned_cols=38  Identities=21%  Similarity=0.498  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eoz_A            4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLS   41 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSS
T ss_pred             cccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999874

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.4e-10  Score=70.89  Aligned_cols=38  Identities=18%  Similarity=0.352  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emy_A            4 GSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPS   41 (46)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCS
T ss_pred             CCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCC
Confidence            45788999999999999999999999999999999863

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=3.7e-10  Score=70.52  Aligned_cols=38  Identities=26%  Similarity=0.349  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en8_A            4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCS   41 (46)
T ss_dssp             CCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSS
T ss_pred             cccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999863

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.6e-10  Score=70.79  Aligned_cols=39  Identities=18%  Similarity=0.408  Sum_probs=35.8

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPS   41 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCS
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCC
Confidence            356889999999999999999999999999999999863

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.6e-10  Score=70.85  Aligned_cols=38  Identities=24%  Similarity=0.454  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eox_A            4 GSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGP   41 (44)
T ss_dssp             CCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCC
T ss_pred             CcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCC
Confidence            56889999999999999999999999999999999863

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.1e-10  Score=70.51  Aligned_cols=38  Identities=21%  Similarity=0.469  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ene_A            4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPS   41 (46)
T ss_dssp             CSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCC
T ss_pred             ccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCC
Confidence            45789999999999999999999999999999999863

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.94  E-value=5e-10  Score=69.90  Aligned_cols=38  Identities=26%  Similarity=0.468  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em9_A            4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPS   41 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCC
T ss_pred             CCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.6e-10  Score=71.42  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.....|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2en3_A            4 GSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPS   41 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCS
T ss_pred             ccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999998864

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.4e-10  Score=70.15  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emm_A            4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPS   41 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTT
T ss_pred             cCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999874

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.94  E-value=4.2e-10  Score=70.45  Aligned_cols=38  Identities=18%  Similarity=0.443  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ema_A            4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPS   41 (46)
T ss_dssp             CSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCC
T ss_pred             ccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCC
Confidence            46789999999999999999999999999999999864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.94  E-value=2.9e-10  Score=73.39  Aligned_cols=36  Identities=17%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhh-hcCCcchh
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMN-VHRRDRAR   99 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr-~HtgERp~   99 (225)
                      +|+++|+|+|.+|+|.|..+..|..||+ +|+++...
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            4789999999999999999999999999 99998764

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.3e-10  Score=70.22  Aligned_cols=38  Identities=18%  Similarity=0.471  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytr_A            4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPS   41 (46)
T ss_dssp             SCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCC
T ss_pred             CcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            46789999999999999999999999999999998863

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.4e-10  Score=70.17  Aligned_cols=38  Identities=21%  Similarity=0.377  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHS   41 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSC
T ss_pred             CCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCC
Confidence            46788999999999999999999999999999998863

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.6e-10  Score=70.08  Aligned_cols=38  Identities=18%  Similarity=0.490  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eme_A            4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPS   41 (46)
T ss_dssp             CCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCC
T ss_pred             CCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCC
Confidence            46789999999999999999999999999999999863

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.1e-10  Score=71.08  Aligned_cols=38  Identities=18%  Similarity=0.395  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emp_A            4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPS   41 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCC
T ss_pred             ccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.5e-10  Score=70.63  Aligned_cols=38  Identities=18%  Similarity=0.429  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   41 (46)
T 2eor_A            4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPS   41 (46)
T ss_dssp             SSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCS
T ss_pred             CcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCC
Confidence            46788999999999999999999999999999999863

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.1e-10  Score=71.07  Aligned_cols=38  Identities=24%  Similarity=0.488  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emh_A            4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPS   41 (46)
T ss_dssp             CCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCS
T ss_pred             CCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            46789999999999999999999999999999999863

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4e-10  Score=70.54  Aligned_cols=38  Identities=21%  Similarity=0.417  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2yu8_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPS   41 (46)
T ss_dssp             CCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCS
T ss_pred             CcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCC
Confidence            46789999999999999999999999999999999863

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.9e-10  Score=70.60  Aligned_cols=38  Identities=18%  Similarity=0.443  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.++..|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytk_A            4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPS   41 (46)
T ss_dssp             CCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCS
T ss_pred             cccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCC
Confidence            46789999999999999999999999999999999864

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.4e-10  Score=71.09  Aligned_cols=38  Identities=24%  Similarity=0.443  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoo_A            4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSS   41 (46)
T ss_dssp             CCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSS
T ss_pred             CCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCC
Confidence            45789999999999999999999999999999998863

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=4.8e-10  Score=70.19  Aligned_cols=38  Identities=18%  Similarity=0.195  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yso_A            4 GSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNS   41 (46)
T ss_dssp             SCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCC
T ss_pred             ccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCC
Confidence            56789999999999999999999999999999999863

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4.6e-10  Score=71.99  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=31.7

Q ss_pred             CCCCCCcceeCCc--cccccCCchhHHHHhhhcCCcc
Q 045333           63 GTTWPPRSYTCTF--CRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        63 ~~~~geKpy~C~~--CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +.++++|||+|.+  |+|.|.+++.|..||++|++++
T Consensus         2 ~~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            2 SSGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CCSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            4567899999987  9999999999999999999873

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4.6e-10  Score=70.49  Aligned_cols=38  Identities=21%  Similarity=0.393  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em5_A            4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCS
T ss_pred             cCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCC
Confidence            46789999999999999999999999999999999863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=4.5e-10  Score=70.00  Aligned_cols=37  Identities=16%  Similarity=0.306  Sum_probs=34.4

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   39 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSG   39 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCS
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCc
Confidence            4688999999999999999999999999999999864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=5.2e-10  Score=70.04  Aligned_cols=38  Identities=16%  Similarity=0.383  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytg_A            4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPS   41 (46)
T ss_dssp             CCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSS
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            46789999999999999999999999999999999863

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.3e-10  Score=70.21  Aligned_cols=38  Identities=18%  Similarity=0.434  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.....|..||++|+++++.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq3_A            4 GSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPS   41 (46)
T ss_dssp             CCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCC
T ss_pred             ccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCC
Confidence            45788999999999999999999999999999999863

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.2e-10  Score=70.03  Aligned_cols=38  Identities=18%  Similarity=0.440  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||++|+++++.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2en1_A            4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPS   41 (46)
T ss_dssp             TTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCS
T ss_pred             ccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            45789999999999999999999999999999999863

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=7.2e-10  Score=69.25  Aligned_cols=39  Identities=18%  Similarity=0.338  Sum_probs=35.7

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhh-hcCCcchh
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMN-VHRRDRAR   99 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr-~HtgERp~   99 (225)
                      -+.+|+++|+|+|.+|+|.|.....|..|++ +|+++|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~   42 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPS   42 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSS
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCC
Confidence            3568899999999999999999999999999 99999863

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=5.6e-10  Score=69.77  Aligned_cols=37  Identities=16%  Similarity=0.452  Sum_probs=34.4

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ..|+++|+|+|.+|+|.|..+..|..||++|+++++.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~   39 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK   39 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCC
Confidence            4688999999999999999999999999999999864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=5.8e-10  Score=67.48  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHH-hhhcCCc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGH-MNVHRRD   96 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGH-mr~HtgE   96 (225)
                      .+|+++|||+|.+|+|.|..+..|..| +++|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            578899999999999999999999999 9999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.87  E-value=3.1e-10  Score=78.91  Aligned_cols=34  Identities=24%  Similarity=0.505  Sum_probs=24.5

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +|+++|||+|.+|||.|.....|..||++|+||+
T Consensus        26 ~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           26 AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             HHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             HhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            4667777777777777777777777777777764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.86  E-value=7.7e-10  Score=65.75  Aligned_cols=31  Identities=19%  Similarity=0.489  Sum_probs=29.5

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      |||+|.+|+|.|.....|..||++|+++++.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            6899999999999999999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.84  E-value=1e-09  Score=61.43  Aligned_cols=30  Identities=27%  Similarity=0.724  Sum_probs=28.3

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +|+|.|.+|++.|.....|..||++|+++|
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            589999999999999999999999999875

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.83  E-value=1e-09  Score=66.35  Aligned_cols=33  Identities=18%  Similarity=0.454  Sum_probs=30.7

Q ss_pred             CCCCcceeCCc--cccccCCchhHHHHhhhcCCcc
Q 045333           65 TWPPRSYTCTF--CRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        65 ~~geKpy~C~~--CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |+++|+|.|.+  |+|.|.+...|..|+++|+++|
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            57899999996  9999999999999999999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.82  E-value=9.1e-10  Score=76.49  Aligned_cols=33  Identities=33%  Similarity=0.719  Sum_probs=31.2

Q ss_pred             CCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .||||+|.+|+|.|.....|..||++|+++||.
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~   33 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPR   33 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCE
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCe
Confidence            489999999999999999999999999999974

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=1.4e-09  Score=65.28  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             CCCCcceeCC--ccccccCCchhHHHHhhhcCCcchh
Q 045333           65 TWPPRSYTCT--FCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        65 ~~geKpy~C~--~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      |+++|+|+|.  .|+|.|.+...|..||++|+++++.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4689999999  5999999999999999999999863

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=2.3e-09  Score=68.18  Aligned_cols=37  Identities=19%  Similarity=0.417  Sum_probs=33.9

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ..+.++|+|+|.+|+|.|.....|..||++|+++|+.
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY   41 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCc
Confidence            4567899999999999999999999999999999863

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.79  E-value=1.2e-09  Score=71.21  Aligned_cols=37  Identities=16%  Similarity=0.382  Sum_probs=34.0

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+|+++++|.|.+|+|.|.....|..||++|+++++.
T Consensus        17 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A           17 SRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             HHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             HhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            4567899999999999999999999999999999863

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.78  E-value=2.3e-09  Score=60.12  Aligned_cols=29  Identities=21%  Similarity=0.545  Sum_probs=27.5

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |||+|.+|++.|.....|..||++|+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            68999999999999999999999999875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=3.3e-09  Score=66.47  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=34.9

Q ss_pred             CCCCCCCcceeCC--ccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCT--FCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~--~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ..+|+++|+|+|.  .|+|.|.+...|..||++|+++|+.
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   43 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPS   43 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            4678999999998  8999999999999999999999863

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.76  E-value=2.8e-09  Score=59.62  Aligned_cols=29  Identities=31%  Similarity=0.746  Sum_probs=27.4

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |+|+|.+|++.|.....|..|+++|+++|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.75  E-value=2.8e-09  Score=59.24  Aligned_cols=29  Identities=24%  Similarity=0.650  Sum_probs=27.5

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |+|+|.+|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            68999999999999999999999999875

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.23  E-value=9.6e-10  Score=62.00  Aligned_cols=30  Identities=30%  Similarity=0.783  Sum_probs=28.1

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +|+|+|.+|+|.|.....|..|+++|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            479999999999999999999999999875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.74  E-value=2.4e-09  Score=59.66  Aligned_cols=29  Identities=21%  Similarity=0.623  Sum_probs=27.5

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |+|+|.+|++.|.....|..|+++|+++|
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            68999999999999999999999999875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.74  E-value=4.9e-09  Score=60.58  Aligned_cols=30  Identities=27%  Similarity=0.556  Sum_probs=28.2

Q ss_pred             CcceeCC--ccccccCCchhHHHHhhhcCCcc
Q 045333           68 PRSYTCT--FCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        68 eKpy~C~--~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +|+|+|.  .|+|.|.+...|..||++|+++|
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            5899999  89999999999999999999875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.73  E-value=5.1e-10  Score=65.94  Aligned_cols=30  Identities=23%  Similarity=0.459  Sum_probs=28.8

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |||+|.+|+|.|.....|..||++|+++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            689999999999999999999999999986

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=1.4e-09  Score=61.44  Aligned_cols=29  Identities=24%  Similarity=0.646  Sum_probs=27.4

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |+|+|.+|+|.|.....|..||++|+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            68999999999999999999999999875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.71  E-value=5.2e-09  Score=58.52  Aligned_cols=30  Identities=17%  Similarity=0.538  Sum_probs=27.9

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |+|+|.+|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            589999999999999999999999998763

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.69  E-value=6e-09  Score=77.62  Aligned_cols=37  Identities=32%  Similarity=0.494  Sum_probs=33.1

Q ss_pred             CCCCCcceeCCc--cccccCCchhHHHHh-hhcCCcchhc
Q 045333           64 TTWPPRSYTCTF--CRREFRSAQALGGHM-NVHRRDRARL  100 (225)
Q Consensus        64 ~~~geKpy~C~~--CgK~FsS~qALgGHm-r~HtgERp~~  100 (225)
                      -++|+|||+|.+  |+|.|.+++.|..|| ++|+++||..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~   60 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAF   60 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcc
Confidence            457999999976  999999999999998 7999999854

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.69  E-value=1.2e-08  Score=72.69  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=33.2

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +.+.++|||+|.+|+|.|..+..|..||++|++++.
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            557889999999999999999999999999999754

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.68  E-value=6.3e-09  Score=58.27  Aligned_cols=28  Identities=29%  Similarity=0.705  Sum_probs=26.4

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCC
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      +|+|+|.+|+|.|.+...|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            5899999999999999999999999975

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.67  E-value=7.5e-09  Score=59.55  Aligned_cols=29  Identities=28%  Similarity=0.781  Sum_probs=27.4

Q ss_pred             cceeCC--ccccccCCchhHHHHhhhcCCcc
Q 045333           69 RSYTCT--FCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~--~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |||+|.  .|+|.|.+...|..||++|+++|
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            689998  99999999999999999999875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.67  E-value=7.1e-09  Score=57.94  Aligned_cols=27  Identities=22%  Similarity=0.668  Sum_probs=25.6

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcC
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      +|+|+|.+|+|.|.....|..||++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            589999999999999999999999985

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.66  E-value=4.9e-09  Score=66.89  Aligned_cols=35  Identities=23%  Similarity=0.597  Sum_probs=31.9

Q ss_pred             CCCCCCcceeCC--ccccccCCchhHHHHhhhcCCcc
Q 045333           63 GTTWPPRSYTCT--FCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        63 ~~~~geKpy~C~--~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      .+|.++|+|+|.  .|+|.|.++..|..||++|+++|
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            357899999996  69999999999999999999875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.65  E-value=6.5e-09  Score=70.89  Aligned_cols=35  Identities=20%  Similarity=0.547  Sum_probs=24.5

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|.++|+|+|.+|+|.|.+...|..||++|+++||
T Consensus        39 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           39 VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             HHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             HcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            34566777777777777777777777777777664

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=1.5e-08  Score=66.21  Aligned_cols=38  Identities=26%  Similarity=0.585  Sum_probs=34.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhh-hcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMN-VHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr-~HtgERp~   99 (225)
                      ...+.++|+|.|.+|+|.|.+...|..||+ +|+++++.
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~   42 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH   42 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCc
Confidence            356788999999999999999999999997 99998863

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.64  E-value=8e-09  Score=58.26  Aligned_cols=27  Identities=30%  Similarity=0.639  Sum_probs=25.6

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcC
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      +|||+|.+|+|.|.....|..||++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            589999999999999999999999985

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.63  E-value=1.2e-08  Score=57.62  Aligned_cols=29  Identities=28%  Similarity=0.678  Sum_probs=27.1

Q ss_pred             cceeCCccccccCCchhHHHH-hhhcCCcc
Q 045333           69 RSYTCTFCRREFRSAQALGGH-MNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGH-mr~HtgER   97 (225)
                      |+|+|.+|++.|.....|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            689999999999999999999 79999875

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.61  E-value=1.4e-08  Score=69.65  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=32.1

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+|.++++|+|.+|++.|.....|..||++|+++++.
T Consensus        39 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~   75 (77)
T 2cot_A           39 RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS   75 (77)
T ss_dssp             TTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCC
T ss_pred             HHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            4677889999999999999999999999999988763

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.60  E-value=1.6e-08  Score=55.90  Aligned_cols=27  Identities=37%  Similarity=0.823  Sum_probs=24.3

Q ss_pred             ceeCCccccccCCchhHHHHhhhcCCc
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      ||+|.+|+|.|.+...|..||++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.59  E-value=2.4e-08  Score=67.37  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=17.8

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ++++|+|+|.+|+|.|.+...|..||++|+++++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   37 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP   37 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            3445555555555555555555555555555443

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.59  E-value=2.2e-08  Score=68.10  Aligned_cols=37  Identities=24%  Similarity=0.501  Sum_probs=31.6

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ..+|+++|+|+|.+|+|.|.+...|..||++|.++++
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   42 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP   42 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCC
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            3577888999999999999999999999999988775

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.54  E-value=1.4e-08  Score=68.59  Aligned_cols=37  Identities=19%  Similarity=0.459  Sum_probs=33.9

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+|.++|+|+|.+|++.|.....|..||+.|+++++.
T Consensus        30 ~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A           30 RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             GGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             HHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4577899999999999999999999999999999864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.53  E-value=3.7e-08  Score=62.80  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=29.5

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      .+.+||||+|..|+|.|.+++.|..||..+..+|
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~py~C~~r   35 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHR   35 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHHHHTSTTC
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcCCeECcCC
Confidence            3568999999999999999999999997666554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.53  E-value=3.3e-08  Score=63.67  Aligned_cols=34  Identities=29%  Similarity=0.607  Sum_probs=31.5

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +|.++++|+|.+|++.|.+...|..||++|.+++
T Consensus        23 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A           23 THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             HTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             hcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            5678999999999999999999999999999886

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=2.2e-08  Score=68.66  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=26.9

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCC
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      +|+++|+|+|.+|+|.|.....|..||++|++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAE   32 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhc
Confidence            46788888888888888888888888888886

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.51  E-value=2.6e-08  Score=64.19  Aligned_cols=32  Identities=28%  Similarity=0.579  Sum_probs=22.8

Q ss_pred             CCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |+|+|+|.+|++.|.+...|..||++|+++++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   32 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP   32 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCC
Confidence            46788888888888888888888888877765

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=1.4e-08  Score=56.28  Aligned_cols=26  Identities=27%  Similarity=0.723  Sum_probs=24.7

Q ss_pred             cceeCCccccccCCchhHHHHhhhcC
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      |||+|.+|+|.|.....|..||++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            68999999999999999999999984

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.48  E-value=6.4e-08  Score=71.30  Aligned_cols=39  Identities=18%  Similarity=0.399  Sum_probs=30.7

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ..++.+.++++|.|++|+|.|.++..|..||++|+++||
T Consensus        18 ~~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~   56 (85)
T 2lv2_A           18 GVLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQV   56 (85)
T ss_dssp             SCCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSS
T ss_pred             CCCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCc
Confidence            345566677888888888888888888888888888876

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.44  E-value=4.8e-08  Score=71.86  Aligned_cols=38  Identities=24%  Similarity=0.607  Sum_probs=35.3

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchhc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL  100 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~~  100 (225)
                      .+|+++|+|+|.+|+|.|.....|..||++|+++++..
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~   55 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKR   55 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcc
Confidence            57889999999999999999999999999999998753

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.43  E-value=3.6e-08  Score=65.40  Aligned_cols=36  Identities=22%  Similarity=0.407  Sum_probs=29.9

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhh-c-CCcch
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNV-H-RRDRA   98 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~-H-tgERp   98 (225)
                      .+|+++|+|+|.+|++.|.+...|..|++. | .++++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~   40 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV   40 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcC
Confidence            467788999999999999999999999988 6 46654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.41  E-value=1.1e-07  Score=64.71  Aligned_cols=35  Identities=29%  Similarity=0.617  Sum_probs=32.3

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      .+.++++|+|.+|+|.|.+...|..||++|+++++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   45 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP   45 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC
Confidence            45678999999999999999999999999999876

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.38  E-value=1.1e-07  Score=68.14  Aligned_cols=36  Identities=17%  Similarity=0.390  Sum_probs=27.1

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      .+|.++++|+|.+|++.|.+...|..||++|+++++
T Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  101 (106)
T 2ee8_A           66 YIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS  101 (106)
T ss_dssp             GGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCC
T ss_pred             HHhCCCCCeECCCcCCcccCHHHHHHHHHHhCCCCC
Confidence            356677778888888888888888888888777765

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.37  E-value=7.5e-08  Score=65.42  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=31.5

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +|.++|+|+|.+|++.|.+...|..||++|+++.
T Consensus        36 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           36 VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             GGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             hcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            5678999999999999999999999999999874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=5.4e-08  Score=70.54  Aligned_cols=31  Identities=23%  Similarity=0.557  Sum_probs=19.3

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|+|+|.+|+|.|.++..|..||++|+++|+
T Consensus        52 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           52 QDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             HHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4566666666666666666666666666655

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.36  E-value=1.3e-07  Score=52.66  Aligned_cols=27  Identities=30%  Similarity=0.662  Sum_probs=25.5

Q ss_pred             cceeCC--ccccccCCchhHHHHhhhcCC
Q 045333           69 RSYTCT--FCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        69 Kpy~C~--~CgK~FsS~qALgGHmr~Htg   95 (225)
                      |+|+|.  .|+|.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            589999  999999999999999999975

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.34  E-value=2.3e-07  Score=63.57  Aligned_cols=37  Identities=19%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             CcCCCCCCCcceeCCccccccCCchhHHHHhh-hcCCc
Q 045333           60 NIMGTTWPPRSYTCTFCRREFRSAQALGGHMN-VHRRD   96 (225)
Q Consensus        60 ~~~~~~~geKpy~C~~CgK~FsS~qALgGHmr-~HtgE   96 (225)
                      .-+.+|+++|+|+|.+|+|.|.....|..||+ .|.++
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~   42 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN   42 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCC
Confidence            34568889999999999999999999999997 67764

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.34  E-value=1.7e-07  Score=68.99  Aligned_cols=35  Identities=20%  Similarity=0.538  Sum_probs=31.9

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHh-hhcCCcc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHM-NVHRRDR   97 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHm-r~HtgER   97 (225)
                      .+|+++|||+|.+|+|.|.++..|..|| ++|++|.
T Consensus        49 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           49 RLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             HTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             hhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            5788999999999999999999999997 6898874

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.32  E-value=3.1e-07  Score=62.88  Aligned_cols=36  Identities=22%  Similarity=0.486  Sum_probs=32.7

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ..+.++|+|+|.+|++.|.+...|..||++|.++++
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   46 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP   46 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcC
Confidence            345678999999999999999999999999999876

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=1.7e-07  Score=67.92  Aligned_cols=37  Identities=22%  Similarity=0.299  Sum_probs=33.6

Q ss_pred             CCCCCCcceeCCccccccC-CchhHHHHhhhcCC-cchh
Q 045333           63 GTTWPPRSYTCTFCRREFR-SAQALGGHMNVHRR-DRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~Fs-S~qALgGHmr~Htg-ERp~   99 (225)
                      .+|.++|+|+|.+|+|.|. +...|..||++|++ +++.
T Consensus        17 ~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~   55 (98)
T 2gqj_A           17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDAL   55 (98)
T ss_dssp             HTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCE
Confidence            4678899999999999999 99999999999998 7763

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=98.30  E-value=1.3e-07  Score=65.36  Aligned_cols=34  Identities=24%  Similarity=0.585  Sum_probs=25.0

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +|.++++|+|.+|++.|.+...|..||++|+++|
T Consensus        56 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           56 THTGEKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             HHHCCCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             HcCCCCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            3456778888888888888888888888887765

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=98.30  E-value=7.8e-08  Score=74.95  Aligned_cols=34  Identities=24%  Similarity=0.535  Sum_probs=20.4

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |.|+|+|+|.+|+|.|.+...|..||++|+++|+
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~   50 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK   50 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC
Confidence            3455666666666666666666666666665554

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.30  E-value=2.4e-07  Score=60.34  Aligned_cols=33  Identities=24%  Similarity=0.572  Sum_probs=25.4

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHh-hhcCCc
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHM-NVHRRD   96 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHm-r~HtgE   96 (225)
                      +|+++++|+|.+|++.|.+...|..|+ ++|.++
T Consensus        24 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           24 SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             TTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             HhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            566778888888888888888888885 677765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.29  E-value=1.4e-07  Score=64.11  Aligned_cols=35  Identities=26%  Similarity=0.562  Sum_probs=31.5

Q ss_pred             CCCCCcceeCCc--cccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTF--CRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~--CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      .|.++++|+|.+  |+|.|.+...|..||++|+++++
T Consensus        32 ~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~   68 (79)
T 2dlk_A           32 QHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD   68 (79)
T ss_dssp             GGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             HhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC
Confidence            466789999999  99999999999999999998876

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.27  E-value=3.3e-07  Score=59.66  Aligned_cols=30  Identities=30%  Similarity=0.725  Sum_probs=28.7

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |+|+|.+|++.|.+...|..||++|+++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   30 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP   30 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC
Confidence            689999999999999999999999999876

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=2.3e-07  Score=65.10  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CCCCcc--------eeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           65 TWPPRS--------YTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        65 ~~geKp--------y~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      |.++++        |+|.+|+|.|.+...|..||++|+++|+.
T Consensus        49 H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   91 (95)
T 2ej4_A           49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSG   91 (95)
T ss_dssp             TTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCC
T ss_pred             ccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            566676        99999999999999999999999999874

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.24  E-value=3.9e-07  Score=63.88  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=22.7

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +|.++++|+|.+|++.|.+...|..||++|++++
T Consensus        58 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           58 IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             HSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             HhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3455666777777777777777777777776664

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.24  E-value=3.1e-07  Score=69.72  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             CCCcceeCCccccccCCchhHHHH-hhhcCCcchhc
Q 045333           66 WPPRSYTCTFCRREFRSAQALGGH-MNVHRRDRARL  100 (225)
Q Consensus        66 ~geKpy~C~~CgK~FsS~qALgGH-mr~HtgERp~~  100 (225)
                      +++|+|+|.+|+|.|..+..|..| +++|+++||..
T Consensus        46 ~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~   81 (102)
T 2ghf_A           46 VLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFK   81 (102)
T ss_dssp             CCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEE
T ss_pred             CCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCee
Confidence            468899999999999999999999 78999988743

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.23  E-value=2.2e-07  Score=59.72  Aligned_cols=32  Identities=25%  Similarity=0.523  Sum_probs=28.8

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCC
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      +|.++|+|+|.+|++.|.....|..||+.|.+
T Consensus        26 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C           26 THTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             HHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             HcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            45688999999999999999999999999874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.21  E-value=6.7e-07  Score=61.28  Aligned_cols=35  Identities=26%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      +.+|+++|+|.|.+|++.|.+...|..||+.|..+
T Consensus         7 ~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~   41 (86)
T 1x6h_A            7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   41 (86)
T ss_dssp             STTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             cceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            34556666666666666666666666666655443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.18  E-value=3.1e-07  Score=61.91  Aligned_cols=38  Identities=24%  Similarity=0.512  Sum_probs=31.5

Q ss_pred             cCCCCCCCcceeCC--ccccccCCchhHHHHhhhcCCcch
Q 045333           61 IMGTTWPPRSYTCT--FCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        61 ~~~~~~geKpy~C~--~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +...+.++|+|+|.  .|+|.|.+...|..|+++|.++++
T Consensus        10 ~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~   49 (73)
T 1f2i_G           10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP   49 (73)
T ss_dssp             TSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC
T ss_pred             hhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC
Confidence            34567788999997  499999999999999999988876

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.17  E-value=8.3e-07  Score=59.81  Aligned_cols=31  Identities=23%  Similarity=0.580  Sum_probs=28.9

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcC
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      +|.++|+|+|.+|++.|.+...|..|+++|+
T Consensus        43 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           43 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             HHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            5678899999999999999999999999995

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=98.17  E-value=2.9e-07  Score=71.70  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=27.8

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|+++|+|+|.+|++.|.+...|..||++|+++++
T Consensus        44 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   78 (133)
T 2lt7_A           44 IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR   78 (133)
T ss_dssp             HHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC
T ss_pred             HcCCCCCeeCCccCeecccccchhhhccccCCCcc
Confidence            45677888888888888888888888888887765

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.16  E-value=5.8e-07  Score=63.21  Aligned_cols=33  Identities=24%  Similarity=0.468  Sum_probs=17.6

Q ss_pred             CCCcceeCC--ccccccCCchhHHHHhhhcCCcch
Q 045333           66 WPPRSYTCT--FCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        66 ~geKpy~C~--~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      .++++|+|.  .|++.|.+...|..|++.|+++++
T Consensus        41 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   75 (100)
T 2ebt_A           41 TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP   75 (100)
T ss_dssp             SCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS
T ss_pred             CCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            344555554  355555555555555555555543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.16  E-value=7.5e-07  Score=58.93  Aligned_cols=30  Identities=23%  Similarity=0.668  Sum_probs=28.1

Q ss_pred             CCCcceeCCccccccCCchhHHHHhhhcCC
Q 045333           66 WPPRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        66 ~geKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      .++++|+|.+|+|.|.+...|..|++.|.+
T Consensus        36 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           36 RNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             SSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            478999999999999999999999999876

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=1e-06  Score=63.99  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=32.4

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +.+|.++|+|+|.+|+|.|.+...|..||+.|...+
T Consensus        72 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           72 EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             hhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            457889999999999999999999999999987654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.16  E-value=1.1e-06  Score=61.60  Aligned_cols=35  Identities=20%  Similarity=0.485  Sum_probs=19.9

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|.++++|.|.+|++.|.+...|..|++.|.++++
T Consensus        30 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   64 (96)
T 2dmd_A           30 CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP   64 (96)
T ss_dssp             GCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCC
T ss_pred             hcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            34455556666666666666666666665555543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.15  E-value=1.1e-06  Score=60.04  Aligned_cols=33  Identities=18%  Similarity=0.492  Sum_probs=29.2

Q ss_pred             CCcceeCCccccccCCchhHHHHh-hhcCCcchh
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHM-NVHRRDRAR   99 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHm-r~HtgERp~   99 (225)
                      ++|+|+|.+|+|.|.....|..|| +.|.++++.
T Consensus        35 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A           35 AALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             TTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             CCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            379999999999999999999999 677777654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.15  E-value=5e-07  Score=65.24  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=31.4

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhh-hcCCcchh
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMN-VHRRDRAR   99 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr-~HtgERp~   99 (225)
                      |+++++|+|.+|++.|.+...|..||+ .|+++++.
T Consensus        64 H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~   99 (107)
T 1wjp_A           64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMA   99 (107)
T ss_dssp             HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCC
T ss_pred             cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCC
Confidence            678999999999999999999999997 99888764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=6.7e-07  Score=60.04  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             CCCcceeCC-ccccccCCchhHHHHhhhcCCcch
Q 045333           66 WPPRSYTCT-FCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        66 ~geKpy~C~-~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +++|||+|. .|+|.|..+..|..||++|..+++
T Consensus        32 ~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           32 CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            456777777 777777777777777777766543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.13  E-value=4.7e-07  Score=61.33  Aligned_cols=28  Identities=21%  Similarity=0.466  Sum_probs=13.8

Q ss_pred             CCcceeCCccccccCCchhHHHHhhhcC
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      ++++|+|.+|++.|.+...|..||++|+
T Consensus        54 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           54 GEKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             TCCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            3444555555555555555555555444

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.13  E-value=7.3e-07  Score=65.58  Aligned_cols=29  Identities=28%  Similarity=0.591  Sum_probs=17.5

Q ss_pred             CCcceeCCccccccCCchhHHHH-hhhcCC
Q 045333           67 PPRSYTCTFCRREFRSAQALGGH-MNVHRR   95 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGH-mr~Htg   95 (225)
                      ++|+|+|.+|+|.|.++..|..| |++|++
T Consensus        59 ~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           59 KQEMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            55666666666666666666666 556654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.12  E-value=6.7e-07  Score=62.66  Aligned_cols=30  Identities=17%  Similarity=0.524  Sum_probs=17.3

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcC
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      |.++++|+|.+|++.|.+...|..|++.|.
T Consensus        26 H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~   55 (88)
T 1llm_C           26 HTGEKPFACDICGRKFARSDERKRHRDIQH   55 (88)
T ss_dssp             HHCCCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHHhC
Confidence            344555666666666666666666655555

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.11  E-value=7.1e-07  Score=67.84  Aligned_cols=33  Identities=21%  Similarity=0.549  Sum_probs=16.2

Q ss_pred             CCCcceeCCc--cccccCCchhHHHHhhhcCCcch
Q 045333           66 WPPRSYTCTF--CRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        66 ~geKpy~C~~--CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      .++++|+|.+  |++.|.+...|..||++|+++++
T Consensus        86 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~  120 (155)
T 2rpc_A           86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP  120 (155)
T ss_dssp             HCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCS
T ss_pred             CCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCC
Confidence            3444555544  55555555555555555554443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=1.3e-06  Score=63.52  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhh--cCCcch
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNV--HRRDRA   98 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~--HtgERp   98 (225)
                      +.+|+++|+|+|.+|+|.|.+...|..||+.  |.++++
T Consensus        11 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~   49 (115)
T 2dmi_A           11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN   49 (115)
T ss_dssp             CCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSC
T ss_pred             eeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCC
Confidence            3678899999999999999999999999999  766654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.10  E-value=1.2e-06  Score=63.13  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=26.4

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      .+|+++|+|+| .|++.|.+...|..||+.|.++++
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~   37 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP   37 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCS
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcC
Confidence            35677788888 788888888888888888777654

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.10  E-value=1.1e-06  Score=56.34  Aligned_cols=29  Identities=24%  Similarity=0.511  Sum_probs=27.6

Q ss_pred             ceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ||+|.+|++.|.+...|..|+++|+++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~   29 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP   29 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC
Confidence            69999999999999999999999999876

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.07  E-value=2.1e-06  Score=58.72  Aligned_cols=32  Identities=16%  Similarity=0.475  Sum_probs=29.9

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +++|+|.+|++.|.+...|..||++|+++++.
T Consensus        45 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~   76 (86)
T 1x6h_A           45 PAAFVCSKCGKTFTRRNTMARHADNCAGPDGV   76 (86)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHCCCCCSC
T ss_pred             CcceECCCCCChhCCHHHHHHHHHHccCCCCc
Confidence            48999999999999999999999999998764

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.07  E-value=1.5e-06  Score=62.57  Aligned_cols=37  Identities=14%  Similarity=0.339  Sum_probs=30.2

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+|.++++|+|.+|++.|.....|..||+.|.+....
T Consensus        58 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~   94 (110)
T 2csh_A           58 KIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEA   94 (110)
T ss_dssp             TTTCCCCCEECSSSCCEESCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCeeCCCCcchhcCHHHHHHHHHHccccccc
Confidence            4677888899999999999999999999888765443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.06  E-value=1.8e-06  Score=60.38  Aligned_cols=32  Identities=19%  Similarity=0.499  Sum_probs=16.2

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      |.++++|+|.+|++.|.+...|..|++.|+++
T Consensus        30 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A           30 HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             SCSSCSEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            33445555555555555555555555555443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=98.05  E-value=7.5e-07  Score=70.05  Aligned_cols=34  Identities=21%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |.++++|+|.+|++.|.+...|..||++|+++++
T Consensus       128 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  161 (190)
T 2i13_A          128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP  161 (190)
T ss_dssp             HHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             hCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            3445566666666666666666666666655544

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.04  E-value=6.6e-07  Score=65.82  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=29.6

Q ss_pred             CCCcceeCCcccccc-CCchhHHHHhhhcCCcch
Q 045333           66 WPPRSYTCTFCRREF-RSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        66 ~geKpy~C~~CgK~F-sS~qALgGHmr~HtgERp   98 (225)
                      .++++|+|.+|+|.| .+...|..||++| ++++
T Consensus        30 ~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~   62 (96)
T 2ctd_A           30 VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEM   62 (96)
T ss_dssp             HHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCC
T ss_pred             cCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCC
Confidence            357899999999999 9999999999999 8876

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.04  E-value=1.6e-06  Score=61.91  Aligned_cols=35  Identities=31%  Similarity=0.713  Sum_probs=27.4

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|.++++|+|.+|++.|.....|..||++|+++++
T Consensus        39 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   73 (106)
T 2ee8_A           39 THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP   73 (106)
T ss_dssp             HHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCT
T ss_pred             HcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            35567788888888888888888888888887765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.02  E-value=2.4e-06  Score=57.56  Aligned_cols=36  Identities=19%  Similarity=0.406  Sum_probs=31.6

Q ss_pred             CCCCCcceeCCc--cccccCCchhHHHHhhhcCCcchh
Q 045333           64 TTWPPRSYTCTF--CRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        64 ~~~geKpy~C~~--CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .....++|.|.+  |+|.|.+...|..||++|+++++.
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~   48 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPF   48 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSE
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCc
Confidence            345678999999  999999999999999999998764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=4.1e-07  Score=60.37  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +++|+|.+|++.|.....|..||++|+++++.
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~   68 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKTS   68 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCS
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCC
Confidence            78999999999999999999999999998763

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=97.99  E-value=1.1e-06  Score=59.51  Aligned_cols=34  Identities=21%  Similarity=0.616  Sum_probs=31.0

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |.++++|.|.+|++.|.+...|..|++.|+++++
T Consensus        24 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   57 (82)
T 2kmk_A           24 HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP   57 (82)
T ss_dssp             HHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCC
T ss_pred             cCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC
Confidence            4578999999999999999999999999998875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=97.99  E-value=1.1e-06  Score=60.59  Aligned_cols=35  Identities=20%  Similarity=0.559  Sum_probs=29.8

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|.++++|.|.+|++.|.+...|..|++.|.++++
T Consensus        28 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   62 (90)
T 1a1h_A           28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP   62 (90)
T ss_dssp             HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             HhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            35567899999999999999999999999988765

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.98  E-value=3.2e-06  Score=64.08  Aligned_cols=36  Identities=14%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhh-hc---CCcch
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMN-VH---RRDRA   98 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr-~H---tgERp   98 (225)
                      ....|+|||+|.+|+|.|..+..|..||+ .|   +++++
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp   50 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS   50 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC
T ss_pred             ccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC
Confidence            34579999999999999999999999998 59   45655

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=97.97  E-value=1.3e-06  Score=63.11  Aligned_cols=34  Identities=21%  Similarity=0.541  Sum_probs=27.3

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |.++++|.|.+|++.|.+...|..||++|+++++
T Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (119)
T 2jp9_A           61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP   94 (119)
T ss_dssp             HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCC
T ss_pred             cCCCCCccCCccCchhCCHHHHHHHHHHhcCCCC
Confidence            4567888888888888888888888888887765

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.97  E-value=1.5e-06  Score=58.51  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=30.9

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +.+|+++|+|+|.+|+|.|....+|.   ++|+++++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~   40 (62)
T 1vd4_A            6 ERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTF   40 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEE
T ss_pred             HHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCE
Confidence            45789999999999999999988886   899998863

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.96  E-value=3.3e-06  Score=61.13  Aligned_cols=34  Identities=26%  Similarity=0.540  Sum_probs=28.4

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +.++++|.|.+|++.|.+...|..||++|+++++
T Consensus        61 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (124)
T 2dlq_A           61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP   94 (124)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCS
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            4567888888888888888888888888888765

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.95  E-value=1.9e-06  Score=59.37  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=23.5

Q ss_pred             CCCCCcceeCC--ccccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCT--FCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~--~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|.++++|.|.  .|++.|.+...|..|++.|+++++
T Consensus        29 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   65 (89)
T 2wbs_A           29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP   65 (89)
T ss_dssp             TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC
T ss_pred             hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            45566677775  377777777777777777766654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.93  E-value=3.7e-06  Score=58.72  Aligned_cols=32  Identities=22%  Similarity=0.477  Sum_probs=22.9

Q ss_pred             CCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ++++|+|.+|++.|.+...|..||+.|.++++
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   35 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKP   35 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCS
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCC
Confidence            56777777777777777777777777776654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.90  E-value=2.3e-06  Score=62.48  Aligned_cols=35  Identities=29%  Similarity=0.627  Sum_probs=21.5

Q ss_pred             CCCCCcceeCCc--cccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTF--CRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~--CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|.++++|.|.+  |++.|.+...|..|+++|+++++
T Consensus        56 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   92 (124)
T 1ubd_C           56 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP   92 (124)
T ss_dssp             GTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCC
T ss_pred             HcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCc
Confidence            345566666654  66666666666666666666554

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.89  E-value=6.4e-06  Score=59.36  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=27.4

Q ss_pred             cCCCCCCCcceeCCccccccCCchhHHHHhhhcC
Q 045333           61 IMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        61 ~~~~~~geKpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      .+.+|.++|+|+|.+|++.|.+...|..||+.|.
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   40 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR   40 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC
Confidence            3456778888888888888888888888888883

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.88  E-value=3.9e-06  Score=57.75  Aligned_cols=30  Identities=30%  Similarity=0.566  Sum_probs=20.5

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhc
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVH   93 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~H   93 (225)
                      +|.++++|+|.+|++.|.+...|..||++|
T Consensus        59 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           59 KHTGHRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             HHHCCCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             HcCCCCCccCCCCCcccCCHHHHHHHHHhh
Confidence            345666777777777777777777777766

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.88  E-value=5.2e-06  Score=60.03  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=25.9

Q ss_pred             CCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           66 WPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        66 ~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +++++|+|.+|++.|.+...|..||+.|.++++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   35 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP   35 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCC
Confidence            467788888888888888888888888877664

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.87  E-value=3.1e-06  Score=56.97  Aligned_cols=31  Identities=26%  Similarity=0.657  Sum_probs=28.0

Q ss_pred             CCCCCCcceeCCc--cccccCCchhHHHHhhhc
Q 045333           63 GTTWPPRSYTCTF--CRREFRSAQALGGHMNVH   93 (225)
Q Consensus        63 ~~~~geKpy~C~~--CgK~FsS~qALgGHmr~H   93 (225)
                      .+|+++|+|+|.+  |+|.|.....|..||++|
T Consensus        40 ~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           40 RTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             HHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             HhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3567899999976  999999999999999987

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=97.87  E-value=1.5e-06  Score=64.55  Aligned_cols=32  Identities=19%  Similarity=0.463  Sum_probs=28.4

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |.++|+|+|.+|+|.|.+...|..||++|  +++
T Consensus        69 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~  100 (129)
T 2wbt_A           69 SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHT  100 (129)
T ss_dssp             HHHHCSEECTTTCCEESSHHHHHHHHHHT--CCC
T ss_pred             hCCCCCeECCCCCcccCCHhHHHHHHHHC--CCC
Confidence            56789999999999999999999999999  554

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=5.3e-06  Score=55.60  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ..++|+|+|.+|+|.|. ...|..|+++ +++++.
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~   37 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPV   37 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEE
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCc
Confidence            46889999999999999 9999999999 888764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.84  E-value=7e-06  Score=56.06  Aligned_cols=31  Identities=16%  Similarity=0.375  Sum_probs=26.8

Q ss_pred             CCC-CcceeCCccccccCCchhHHHHhhhcCC
Q 045333           65 TWP-PRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        65 ~~g-eKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      |.+ +++|+|.+|++.|.+...|..||+.|.+
T Consensus        39 h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A           39 HTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             SSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             cCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            444 4899999999999999999999997654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=97.79  E-value=8.6e-06  Score=60.35  Aligned_cols=29  Identities=21%  Similarity=0.456  Sum_probs=27.8

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      +++|+|.+|+|.|.+...|..||+.|+++
T Consensus        98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           98 EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            79999999999999999999999999886

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.78  E-value=6.4e-06  Score=60.13  Aligned_cols=32  Identities=28%  Similarity=0.551  Sum_probs=20.2

Q ss_pred             CCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ++++|.|.+|++.|.+...|..||+.|.++++
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   62 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP   62 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            45666666666666666666666666666554

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.74  E-value=5e-06  Score=65.28  Aligned_cols=34  Identities=21%  Similarity=0.499  Sum_probs=23.4

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |.++++|.|.+|++.|.+...|..||+.|+++++
T Consensus       100 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  133 (190)
T 2i13_A          100 HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP  133 (190)
T ss_dssp             HHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCC
T ss_pred             cCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            4456677777777777777777777777776654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.74  E-value=1.3e-05  Score=54.32  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=30.7

Q ss_pred             CCCcceeCCc--cccccCCchhHHHHhh-hcCCcchh
Q 045333           66 WPPRSYTCTF--CRREFRSAQALGGHMN-VHRRDRAR   99 (225)
Q Consensus        66 ~geKpy~C~~--CgK~FsS~qALgGHmr-~HtgERp~   99 (225)
                      +++++|.|..  |++.|.+...|..||+ .|.++++.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~   39 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSF   39 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCE
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCe
Confidence            4789999998  9999999999999999 79988763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.72  E-value=6.5e-06  Score=57.55  Aligned_cols=31  Identities=23%  Similarity=0.671  Sum_probs=29.6

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|+|.|.+|++.|.+...|..||++|.++++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   31 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP   31 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            5899999999999999999999999999876

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=97.72  E-value=1.1e-05  Score=58.00  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=20.7

Q ss_pred             CCCCcceeCC--ccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCT--FCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~--~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      |.++++|+|.  .|++.|.+...|..||+.|.++++
T Consensus        31 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   66 (119)
T 2jp9_A           31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP   66 (119)
T ss_dssp             HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCC
T ss_pred             hCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCC
Confidence            3445666666  466666666666666666665543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.68  E-value=6e-06  Score=62.67  Aligned_cols=35  Identities=31%  Similarity=0.691  Sum_probs=18.9

Q ss_pred             CCCCCcceeCCc--cccccCCchhHHHHhhhcCCcch
Q 045333           64 TTWPPRSYTCTF--CRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        64 ~~~geKpy~C~~--CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|.++++|+|.+  |+|.|.+...|..||++|+++|+
T Consensus       114 ~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A          114 THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS  150 (155)
T ss_dssp             TTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCC
T ss_pred             hhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            444555555554  55555555555555555555544

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=97.67  E-value=1.3e-05  Score=56.26  Aligned_cols=31  Identities=19%  Similarity=0.593  Sum_probs=16.2

Q ss_pred             CcceeCCc--cccccCCchhHHHHhhhcCCcch
Q 045333           68 PRSYTCTF--CRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        68 eKpy~C~~--CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +|+|.|.+  |++.|.....|..|++.|.++++
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   45 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP   45 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC
Confidence            44555554  55555555555555555554443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.67  E-value=7.6e-06  Score=55.47  Aligned_cols=32  Identities=25%  Similarity=0.502  Sum_probs=28.6

Q ss_pred             CCCCCcceeCCc--cccccCCchhHHHHhhhcCC
Q 045333           64 TTWPPRSYTCTF--CRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        64 ~~~geKpy~C~~--CgK~FsS~qALgGHmr~Htg   95 (225)
                      +|.++++|+|.+  |++.|.+...|..||++|++
T Consensus        25 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A           25 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             HhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            456789999988  99999999999999999987

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.62  E-value=2.2e-05  Score=59.11  Aligned_cols=36  Identities=19%  Similarity=0.498  Sum_probs=31.5

Q ss_pred             CCCCCcceeCCc--cccccCCchhHHHHh-hhcCCcchh
Q 045333           64 TTWPPRSYTCTF--CRREFRSAQALGGHM-NVHRRDRAR   99 (225)
Q Consensus        64 ~~~geKpy~C~~--CgK~FsS~qALgGHm-r~HtgERp~   99 (225)
                      +|.++++|+|.+  |++.|.+...|..|| +.|.++++.
T Consensus        91 ~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~  129 (155)
T 2gli_A           91 SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY  129 (155)
T ss_dssp             HTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCE
T ss_pred             HcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCe
Confidence            467889999998  999999999999998 899988763

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.59  E-value=2.5e-05  Score=58.82  Aligned_cols=36  Identities=22%  Similarity=0.542  Sum_probs=32.0

Q ss_pred             CCCCCcceeCCc--cccccCCchhHHHHhhhcCCcchh
Q 045333           64 TTWPPRSYTCTF--CRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        64 ~~~geKpy~C~~--CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +|.++++|.|.+  |++.|.+...|..||+.|+++++.
T Consensus        61 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   98 (155)
T 2gli_A           61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY   98 (155)
T ss_dssp             HHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCE
T ss_pred             hcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCe
Confidence            456789999986  999999999999999999998763

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=97.54  E-value=2e-05  Score=61.86  Aligned_cols=32  Identities=22%  Similarity=0.410  Sum_probs=23.2

Q ss_pred             CCcceeC--CccccccCCchhHHHHhhhcCCcch
Q 045333           67 PPRSYTC--TFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        67 geKpy~C--~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      ++++|.|  .+|++.|.+...|..||++|+++++
T Consensus       101 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~  134 (190)
T 1tf6_A          101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP  134 (190)
T ss_dssp             TTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCS
T ss_pred             CcceeeCCCCCCccccCCHHHHHHHHHHhCCCCC
Confidence            5667777  6677777777777777777777665

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.51  E-value=2.5e-05  Score=52.87  Aligned_cols=30  Identities=23%  Similarity=0.472  Sum_probs=27.7

Q ss_pred             ceeC--CccccccCCchhHHHHhhhcCCcchh
Q 045333           70 SYTC--TFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        70 py~C--~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ||+|  ..|++.|.+...|..||++|.++++.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   32 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPY   32 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCE
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCe
Confidence            6999  99999999999999999999998763

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=97.34  E-value=9e-05  Score=58.09  Aligned_cols=30  Identities=23%  Similarity=0.506  Sum_probs=20.8

Q ss_pred             CCCCCcceeCC--ccccccCCchhHHHHh-hhc
Q 045333           64 TTWPPRSYTCT--FCRREFRSAQALGGHM-NVH   93 (225)
Q Consensus        64 ~~~geKpy~C~--~CgK~FsS~qALgGHm-r~H   93 (225)
                      +|.++++|.|.  .|++.|.+...|..|+ +.|
T Consensus        66 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h   98 (190)
T 1tf6_A           66 THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH   98 (190)
T ss_dssp             TTTTCCCEECCSSSCCCEESCHHHHHHHHHTTS
T ss_pred             HccCCCceeCCCCCCCCccCCHHHHHHHHHHhc
Confidence            55666777777  6777777777777777 555

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.14  E-value=0.00013  Score=51.37  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      .++.++|+|.|.+|++.|. ...|..|+ .|.++++
T Consensus        10 ~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~   43 (75)
T 2d9k_A           10 ETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGART   43 (75)
T ss_dssp             CCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCE
T ss_pred             cccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCc
Confidence            4678899999999999994 89999999 8888887

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.06  E-value=0.00011  Score=59.11  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=28.6

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcC
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      -.++|+++|.|.+|+|.|.+..+|..|+|+..
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            45779999999999999999999999998654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.05  E-value=0.00026  Score=49.35  Aligned_cols=30  Identities=23%  Similarity=0.323  Sum_probs=27.0

Q ss_pred             cceeCCccccccCCchhHHHHhhh-cCCcch
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNV-HRRDRA   98 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~-HtgERp   98 (225)
                      ..|.|.+|+|.|.+..+|..|+++ |.++++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   54 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPE   54 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTT
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCC
Confidence            358899999999999999999998 988765

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.78  E-value=0.00051  Score=44.27  Aligned_cols=20  Identities=15%  Similarity=0.092  Sum_probs=18.1

Q ss_pred             CCCCCcceeCCccccccCCc
Q 045333           64 TTWPPRSYTCTFCRREFRSA   83 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~   83 (225)
                      +|.++|+|+|.+|+|.|.++
T Consensus        35 ~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A           35 VHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             TSCCCCCCCSSSSCCSSCCC
T ss_pred             hcCCCCCccCCCCCCCCCCC
Confidence            67899999999999999874

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.54  E-value=0.00063  Score=44.70  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=24.5

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHH
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGG   88 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgG   88 (225)
                      +.+|.++++|.|.+|++.|.+...|..
T Consensus        10 ~~~h~~~~~~~C~~C~k~f~~~~~l~~   36 (73)
T 2ctu_A           10 QKIHLGDRSQKCSKCGIIFIRRSTLSR   36 (73)
T ss_dssp             CCCCCCCSEEECSSSCCEEECCCCCCC
T ss_pred             HHHhCCCCCeeCCcccchhCCHHHhCc
Confidence            457889999999999999999999887

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.46  E-value=0.00029  Score=49.58  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=29.3

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      +.++|+|.|..|++.|. ...|..|+++|.+++.
T Consensus        38 ~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~~   70 (75)
T 2d9k_A           38 YCGARTELCGNCGRNVL-VKDLKTHPEVCGREGS   70 (75)
T ss_dssp             HHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBSS
T ss_pred             HcCCCceEcccCCCcCc-HHHHHHHHHHccCCcC
Confidence            46789999999999998 5999999999999853

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=96.25  E-value=0.00034  Score=46.69  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=22.7

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHH
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGH   89 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGH   89 (225)
                      .+|.++++|+|.+|++.|.....+.-|
T Consensus        32 ~~H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A           32 LFDPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             HEETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             hhcCCCCCEECCCCCCccccCcccccc
Confidence            467899999999999999988776543

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.73  E-value=0.0079  Score=37.40  Aligned_cols=17  Identities=6%  Similarity=-0.066  Sum_probs=14.8

Q ss_pred             CCCCCCCcceeCCcccc
Q 045333           62 MGTTWPPRSYTCTFCRR   78 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK   78 (225)
                      +.+|+++|+|+|.+|+|
T Consensus        32 ~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           32 KLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             GGGSCSCCCCCSCCCCC
T ss_pred             HHhcCCCCCccCCCCCC
Confidence            35688999999999997

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.45  E-value=0.016  Score=40.20  Aligned_cols=30  Identities=30%  Similarity=0.517  Sum_probs=27.1

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcch
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDRA   98 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgERp   98 (225)
                      -.|.|+.|++.|+...+|.+||+.-.++..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~v   40 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEMV   40 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcchh
Confidence            589999999999999999999998777754

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.46  E-value=0.14  Score=30.86  Aligned_cols=15  Identities=0%  Similarity=-0.401  Sum_probs=13.0

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        32 ~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A           32 QLIHTGEKPSGPSSG   46 (46)
T ss_dssp             HTTTCCCCCSCCSCC
T ss_pred             HHHcCCCCCCCCCCC
Confidence            357889999999998

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.32  E-value=0.15  Score=30.89  Aligned_cols=15  Identities=0%  Similarity=-0.319  Sum_probs=13.0

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        34 ~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           34 RRSHSGVKPSGPSSG   48 (48)
T ss_dssp             HTTSCCCCSCSSCCC
T ss_pred             HHHhCCCCCCCCCCC
Confidence            357889999999998

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.82  E-value=0.17  Score=30.58  Aligned_cols=15  Identities=0%  Similarity=-0.325  Sum_probs=12.9

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        32 ~~~H~~~k~~~C~~C   46 (46)
T 2ene_A           32 QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             HTTTCCCCCCSCCCC
T ss_pred             HhhcCCCCCCCCCCC
Confidence            356889999999998

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.77  E-value=0.16  Score=30.59  Aligned_cols=15  Identities=0%  Similarity=-0.341  Sum_probs=13.0

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        32 ~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           32 RRIHTGEKPSGPSSG   46 (46)
T ss_dssp             HTTTTTCCCCSSCCC
T ss_pred             HHHhCCCCCCCCCCC
Confidence            357889999999998

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.52  E-value=0.17  Score=30.61  Aligned_cols=15  Identities=13%  Similarity=-0.135  Sum_probs=12.9

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        32 ~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A           32 MRTHSGEKPSGPSSG   46 (46)
T ss_dssp             HTTTCCSCSSCCCCC
T ss_pred             HHHhCCCCCCCCCCC
Confidence            357889999999998

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.49  E-value=0.17  Score=30.36  Aligned_cols=14  Identities=0%  Similarity=-0.259  Sum_probs=12.6

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~k~~~C~~C   46 (46)
T 2en8_A           33 RVHMGEKCSGPSSG   46 (46)
T ss_dssp             TTTCCSCSSCCSCC
T ss_pred             HHhCCCCCCCCCCC
Confidence            57889999999998

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.44  E-value=0.15  Score=30.75  Aligned_cols=15  Identities=7%  Similarity=-0.172  Sum_probs=12.9

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|++|
T Consensus        32 ~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           32 RGIHTGEKPSGPSSG   46 (46)
T ss_dssp             GGGTSCCCCCSCCCC
T ss_pred             hhhcCCCCCCCCCCC
Confidence            356889999999998

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.38  E-value=0.17  Score=30.38  Aligned_cols=15  Identities=0%  Similarity=-0.378  Sum_probs=13.0

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        32 ~~~H~~~k~~~C~~C   46 (46)
T 2eop_A           32 QRIHTGENPSGPSSG   46 (46)
T ss_dssp             HTTTTTSCCSCCCCC
T ss_pred             HHHcCCCCCCCCCCC
Confidence            357889999999998

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.34  E-value=0.18  Score=30.43  Aligned_cols=15  Identities=7%  Similarity=-0.270  Sum_probs=13.0

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        32 ~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A           32 QKVHTGERPSGPSSG   46 (46)
T ss_dssp             HTTSCSCCSSCCSCC
T ss_pred             HHhhCCCCCCCCCCC
Confidence            357889999999998

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.12  E-value=0.19  Score=30.15  Aligned_cols=14  Identities=0%  Similarity=-0.325  Sum_probs=12.5

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|.++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2ytr_A           33 RIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTTTTCSCCCSCCC
T ss_pred             HhcCCCCCCCCCCC
Confidence            56889999999998

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.11  E-value=0.18  Score=30.43  Aligned_cols=15  Identities=0%  Similarity=-0.325  Sum_probs=13.0

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        32 ~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A           32 QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             HTTTSSSCCCSCCCC
T ss_pred             HHHhCCCCCCCCCCC
Confidence            357889999999998

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.09  E-value=0.18  Score=30.53  Aligned_cols=15  Identities=0%  Similarity=-0.325  Sum_probs=13.0

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        32 ~~~H~~~~~~~C~~C   46 (46)
T 2em5_A           32 QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             HTTTSCSCCSSCCCC
T ss_pred             HHHhCCCCCCCCCCC
Confidence            357889999999998

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=86.87  E-value=0.16  Score=30.50  Aligned_cols=14  Identities=0%  Similarity=-0.306  Sum_probs=12.4

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~k~~~C~~C   46 (46)
T 2el4_A           33 RSHTGVKPSGPSSG   46 (46)
T ss_dssp             GGSSSCCCSCCTTC
T ss_pred             HHhCCCCCCCCCCC
Confidence            46889999999998

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.52  E-value=0.15  Score=30.72  Aligned_cols=15  Identities=0%  Similarity=-0.312  Sum_probs=12.9

Q ss_pred             CCCCCCCcceeCCcc
Q 045333           62 MGTTWPPRSYTCTFC   76 (225)
Q Consensus        62 ~~~~~geKpy~C~~C   76 (225)
                      +.+|+++|+|+|.+|
T Consensus        32 ~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A           32 QRVHTGEKPSGPSSG   46 (46)
T ss_dssp             GGGGSSCCSSCSCCC
T ss_pred             HHHcCCCCCCCCCCC
Confidence            356889999999998

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.30  E-value=0.19  Score=30.44  Aligned_cols=14  Identities=0%  Similarity=-0.327  Sum_probs=12.4

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|++|
T Consensus        33 ~~H~~~k~~~C~~c   46 (46)
T 2emf_A           33 KIHTGEKPSGPSSG   46 (46)
T ss_dssp             GGTSCSSCSCCCCC
T ss_pred             HHhCCCCCCCCCCC
Confidence            46889999999998

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.21  E-value=0.14  Score=30.78  Aligned_cols=14  Identities=0%  Similarity=-0.356  Sum_probs=12.3

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2eoe_A           33 RIHTGVKPSGPSSG   46 (46)
T ss_dssp             GGGSCCCSCSSCCC
T ss_pred             HHcCCCCCCCCCCC
Confidence            46789999999998

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.15  E-value=0.22  Score=29.97  Aligned_cols=13  Identities=0%  Similarity=-0.358  Sum_probs=12.0

Q ss_pred             CCCCCcceeCCcc
Q 045333           64 TTWPPRSYTCTFC   76 (225)
Q Consensus        64 ~~~geKpy~C~~C   76 (225)
                      +|+++|+|+|.+|
T Consensus        35 ~H~~~k~~~C~~C   47 (47)
T 2epx_A           35 YHTGEKPSGPSSG   47 (47)
T ss_dssp             TTTTSCSSSCCCC
T ss_pred             hcCCCCCCCCCCC
Confidence            7889999999998

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.03  E-value=0.17  Score=30.56  Aligned_cols=14  Identities=0%  Similarity=-0.370  Sum_probs=12.4

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~k~~~C~~C   46 (46)
T 2em7_A           33 MVHTGEKPSGPSSG   46 (46)
T ss_dssp             GGGTTCCCSSTTCC
T ss_pred             HHhCCCCCCCCCCC
Confidence            46789999999998

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=85.54  E-value=0.16  Score=30.76  Aligned_cols=14  Identities=0%  Similarity=-0.308  Sum_probs=12.3

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2el6_A           33 RMHTREKPSGPSSG   46 (46)
T ss_dssp             GGGCCSSCCSCCCC
T ss_pred             HHcCCCCCCCCCCC
Confidence            46789999999998

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=85.48  E-value=0.19  Score=30.35  Aligned_cols=14  Identities=0%  Similarity=-0.256  Sum_probs=12.3

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2em0_A           33 NVHVGEKPSGPSSG   46 (46)
T ss_dssp             GGGSSSSCSCSSCC
T ss_pred             HHcCCCCCcCCCCC
Confidence            46789999999998

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.30  E-value=0.3  Score=29.40  Aligned_cols=14  Identities=0%  Similarity=-0.325  Sum_probs=12.4

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|++|
T Consensus        33 ~~H~~~k~~~C~~c   46 (46)
T 2ep2_A           33 QIHTGEKPSGPSSG   46 (46)
T ss_dssp             HTTSSCCSCCSCCC
T ss_pred             HHhCCCCCCCCCCC
Confidence            46889999999998

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=85.20  E-value=0.2  Score=30.14  Aligned_cols=14  Identities=0%  Similarity=-0.306  Sum_probs=12.3

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|.++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2em9_A           33 RVHSGEKPSGPSSG   46 (46)
T ss_dssp             GGGTSCCCCSTTCC
T ss_pred             HHhCCCCCCCCCCC
Confidence            46789999999998

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.13  E-value=0.18  Score=30.55  Aligned_cols=14  Identities=0%  Similarity=-0.225  Sum_probs=12.2

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2elz_A           33 RVHMGEKTSGPSSG   46 (46)
T ss_dssp             GGGGSCCCCCSCCC
T ss_pred             HhcCCCCCCCCCCC
Confidence            46789999999998

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=84.97  E-value=0.18  Score=30.39  Aligned_cols=14  Identities=0%  Similarity=-0.327  Sum_probs=12.3

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~k~~~C~~c   46 (46)
T 2ema_A           33 KIHTGEKPSGPSSG   46 (46)
T ss_dssp             TGGGCCCCCSSSCC
T ss_pred             HhcCCCCCCCCCCC
Confidence            46789999999998

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=84.86  E-value=0.15  Score=32.29  Aligned_cols=23  Identities=0%  Similarity=0.020  Sum_probs=20.6

Q ss_pred             ccccCCchhHHHHhhhcCCcchh
Q 045333           77 RREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        77 gK~FsS~qALgGHmr~HtgERp~   99 (225)
                      +|.|.....|..|+++|+++++.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~   25 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPA   25 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCE
T ss_pred             ccccCCCcchhhHHHhcCCCCCc
Confidence            57899999999999999999863

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.85  E-value=0.18  Score=30.43  Aligned_cols=14  Identities=0%  Similarity=-0.323  Sum_probs=12.3

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2eml_A           33 RIHSGKKPSGPSSG   46 (46)
T ss_dssp             GGGSSCCCSCSSCC
T ss_pred             HHhcCCCCCCCCCC
Confidence            46789999999998

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.49  E-value=0.2  Score=30.12  Aligned_cols=14  Identities=0%  Similarity=-0.325  Sum_probs=12.3

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2eme_A           33 RIHTGEKPSGPSSG   46 (46)
T ss_dssp             GGGCCCSCCSSCCC
T ss_pred             HhcCCCCCCCCCCC
Confidence            46789999999998

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.48  E-value=0.23  Score=29.96  Aligned_cols=14  Identities=0%  Similarity=-0.311  Sum_probs=12.3

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2en1_A           33 RVHTGEKPSGPSSG   46 (46)
T ss_dssp             GGGSCCCCSCCCCC
T ss_pred             HHcCCCCCCCCCCC
Confidence            46789999999998

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.42  E-value=0.18  Score=30.39  Aligned_cols=15  Identities=0%  Similarity=-0.307  Sum_probs=13.0

Q ss_pred             CCCCCCcceeCCccc
Q 045333           63 GTTWPPRSYTCTFCR   77 (225)
Q Consensus        63 ~~~~geKpy~C~~Cg   77 (225)
                      .+|+++|+|.|.+||
T Consensus        31 ~~H~~~~~~~C~~cg   45 (45)
T 2epq_A           31 RSHDGSVGKSGPSSG   45 (45)
T ss_dssp             HHHSCCCCCCCCCCC
T ss_pred             HHccCCCCCCCcCCC
Confidence            457899999999997

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.07  E-value=0.51  Score=34.77  Aligned_cols=28  Identities=29%  Similarity=0.560  Sum_probs=21.7

Q ss_pred             cceeCCccccccCC-------chhHHHHhhhcCCc
Q 045333           69 RSYTCTFCRREFRS-------AQALGGHMNVHRRD   96 (225)
Q Consensus        69 Kpy~C~~CgK~FsS-------~qALgGHmr~HtgE   96 (225)
                      ..=.|++|++.|..       -.+|..|++.++.+
T Consensus        27 ~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           27 QYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             SCEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             CEEECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            45689999999982       56899998665554

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.86  E-value=0.27  Score=29.51  Aligned_cols=14  Identities=0%  Similarity=-0.337  Sum_probs=12.2

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~~~~~C~~C   46 (46)
T 2eq4_A           33 RLHSGEKPSGPSSG   46 (46)
T ss_dssp             HHCCSSSCCCCCCC
T ss_pred             HhcCCCCCCCCCCC
Confidence            45789999999998

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=82.81  E-value=0.48  Score=36.06  Aligned_cols=30  Identities=20%  Similarity=0.443  Sum_probs=25.1

Q ss_pred             CCcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .+..-.|-+|||.|.   .|.+|.+.|+|..|.
T Consensus        18 ~~d~iiClecGK~fK---~LkRHL~~~hgltpe   47 (87)
T 2jsp_A           18 QDDHIVCLECGGSFK---SLKRHLTTHHSMTPE   47 (87)
T ss_dssp             CSSCEECTBTCCEES---BHHHHHHHTTCSCHH
T ss_pred             CCCceEecccchhhH---HHHHHHHHccCCCHH
Confidence            355679999999999   599999998887763

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.61  E-value=0.42  Score=28.72  Aligned_cols=14  Identities=0%  Similarity=-0.325  Sum_probs=12.1

Q ss_pred             CCCCCCcceeCCcc
Q 045333           63 GTTWPPRSYTCTFC   76 (225)
Q Consensus        63 ~~~~geKpy~C~~C   76 (225)
                      .+|+++|+|+|.+|
T Consensus        33 ~~H~~~k~~~C~~C   46 (46)
T 2eoq_A           33 MVHTAEKPSGPSSG   46 (46)
T ss_dssp             HHTTCCCSSSCCCC
T ss_pred             HHcCCCCCCCCCCC
Confidence            35789999999998

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=81.08  E-value=0.68  Score=35.95  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=24.1

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhh
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMN   91 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr   91 (225)
                      +.+.+.|.|.+|++.|.+...|..|.+
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            346789999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	4e-18

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.8 bits (179), Expect = 4e-18
 Identities = 33/35 (94%), Positives = 35/35 (100%)

Query: 66  WPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARL 100
           WPPRSYTC+FC+REFRSAQALGGHMNVHRRDRARL
Sbjct: 1   WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	99.32
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.26
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.23
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.2
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.19
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.16
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.09
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.08
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.05
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.04
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.97
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.87
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.87
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.86
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.83
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.65
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.65
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.6
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.57
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.5
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.48
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.76
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.68
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.66
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.58
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.57
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.56
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.18
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.17
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.97
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.82
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.37
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.27
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.83
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.71
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.36
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.25
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.02
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.9
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.66
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.19
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.82
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.9
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	91.89
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	90.78
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	89.68
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.08
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	88.15
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.83
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.19
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	85.09
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	84.0

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.32  E-value=2.4e-13  Score=88.23  Aligned_cols=36  Identities=92%  Similarity=1.679  Sum_probs=32.6

Q ss_pred             CCCcceeCCccccccCCchhHHHHhhhcCCcchhcc
Q 045333           66 WPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLH  101 (225)
Q Consensus        66 ~geKpy~C~~CgK~FsS~qALgGHmr~HtgERp~~~  101 (225)
                      |+.|.|+|++|+|.|.+.|||||||+.|+.+|..++
T Consensus         1 ~p~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~~~k   36 (37)
T d1njqa_           1 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   36 (37)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCccCCCCCCCccCCcccccchHhhhcchHHHhc
Confidence            567899999999999999999999999999987543

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.4e-13  Score=83.17  Aligned_cols=33  Identities=24%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             CCCCCcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           64 TTWPPRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        64 ~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      .|+|+|||+|++|||.|..++.|..|||+|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            488999999999999999999999999999997

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.6e-12  Score=83.40  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=33.3

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      ..+|+++|||+|++|||.|...+.|..|||+|+||
T Consensus         4 ~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           4 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            46899999999999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.7e-12  Score=81.63  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      .+|+|||||+|.+|+|.|..+..|..||++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4799999999999999999999999999999876

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=3.5e-12  Score=81.23  Aligned_cols=33  Identities=21%  Similarity=0.499  Sum_probs=31.0

Q ss_pred             CCCCcceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           65 TWPPRSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        65 ~~geKpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |+|||||+|.+|+|.|..+..|..|||+|+.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            679999999999999999999999999999763

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.16  E-value=4.4e-12  Score=77.62  Aligned_cols=29  Identities=31%  Similarity=0.746  Sum_probs=28.2

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |||.|.+|+|.|..+..|..|||+|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            79999999999999999999999999996

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.4e-11  Score=75.46  Aligned_cols=29  Identities=21%  Similarity=0.688  Sum_probs=28.2

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |||.|.+|+|.|..++.|..|+|+|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            79999999999999999999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=1.1e-11  Score=75.51  Aligned_cols=28  Identities=25%  Similarity=0.701  Sum_probs=27.2

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCC
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      ||||+|.+|+|.|..+..|..|||+|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            7999999999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=3.8e-11  Score=76.51  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CCCCCCCcceeCCccccccCCchhHHHHhhhcCC
Q 045333           62 MGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        62 ~~~~~geKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      ..+|+|||||+|.+|+|.|..++.|..||++|.+
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            3689999999999999999999999999999964

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4e-11  Score=76.27  Aligned_cols=33  Identities=18%  Similarity=0.405  Sum_probs=29.2

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhcCC
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      .+|+|||||+|++|+|.|..+..|..|++.|.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            479999999999999999999999999865443

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.2e-11  Score=76.54  Aligned_cols=33  Identities=30%  Similarity=0.733  Sum_probs=30.7

Q ss_pred             CCcceeCCccccccCCchhHHHHhh-hcCCcchh
Q 045333           67 PPRSYTCTFCRREFRSAQALGGHMN-VHRRDRAR   99 (225)
Q Consensus        67 geKpy~C~~CgK~FsS~qALgGHmr-~HtgERp~   99 (225)
                      -+|||+|.+|||.|+.+.+|..||+ +|++|||.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy   35 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH   35 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCc
Confidence            4799999999999999999999986 79999985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=5.4e-11  Score=79.62  Aligned_cols=34  Identities=26%  Similarity=0.766  Sum_probs=32.2

Q ss_pred             CCCCCcceeCCc--cccccCCchhHHHHhhhcCCcc
Q 045333           64 TTWPPRSYTCTF--CRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        64 ~~~geKpy~C~~--CgK~FsS~qALgGHmr~HtgER   97 (225)
                      .|+++|||.|.+  |+|.|..+++|..||++|+|||
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            478999999998  9999999999999999999996

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.2e-10  Score=70.55  Aligned_cols=28  Identities=32%  Similarity=0.794  Sum_probs=27.1

Q ss_pred             cceeCCc--cccccCCchhHHHHhhhcCCc
Q 045333           69 RSYTCTF--CRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHmr~HtgE   96 (225)
                      |||.|.+  |+|.|.++++|..|||+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            7999999  999999999999999999997

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.1e-10  Score=69.93  Aligned_cols=28  Identities=29%  Similarity=0.755  Sum_probs=27.2

Q ss_pred             cceeCCc--cccccCCchhHHHHhhhcCCc
Q 045333           69 RSYTCTF--CRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHmr~HtgE   96 (225)
                      |||.|.+  |+|.|.++++|..|||+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            7999999  999999999999999999997

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.3e-10  Score=70.11  Aligned_cols=29  Identities=28%  Similarity=0.764  Sum_probs=27.4

Q ss_pred             cceeCCc--cccccCCchhHHHHhhhcCCcc
Q 045333           69 RSYTCTF--CRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHmr~HtgER   97 (225)
                      |||.|++  |+|.|.+.++|..|||+|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            7999975  9999999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.6e-10  Score=67.96  Aligned_cols=26  Identities=27%  Similarity=0.667  Sum_probs=25.2

Q ss_pred             cceeCCccccccCCchhHHHHhhhcC
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      |||+|..|||.|..++.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            79999999999999999999999996

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=5e-09  Score=65.25  Aligned_cols=29  Identities=28%  Similarity=0.641  Sum_probs=27.5

Q ss_pred             CcceeCCc--cccccCCchhHHHHhhhcCCc
Q 045333           68 PRSYTCTF--CRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        68 eKpy~C~~--CgK~FsS~qALgGHmr~HtgE   96 (225)
                      ||||.|.+  |+|.|.+..+|..||++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            69999999  999999999999999999874

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.5e-09  Score=70.13  Aligned_cols=31  Identities=26%  Similarity=0.545  Sum_probs=24.2

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      ||+|+|. |||.|..+.+|..|+++|+++||.
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy   31 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPY   31 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSE
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCC
Confidence            5788884 888888888888888888888763

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7e-09  Score=61.77  Aligned_cols=26  Identities=27%  Similarity=0.563  Sum_probs=25.0

Q ss_pred             ceeCCccccccCCchhHHHHhhhcCC
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      ||+|.+|+|.|+++..|..|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            78999999999999999999999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=5.6e-09  Score=63.81  Aligned_cols=27  Identities=33%  Similarity=0.831  Sum_probs=26.0

Q ss_pred             cceeCCc--cccccCCchhHHHHhhhcCC
Q 045333           69 RSYTCTF--CRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHmr~Htg   95 (225)
                      |||.|.+  |+|.|.+..+|..|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            7999999  99999999999999999986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=5e-09  Score=69.35  Aligned_cols=31  Identities=32%  Similarity=0.725  Sum_probs=29.4

Q ss_pred             CCCCCCcceeCCccccccCCchhHHHHhhhc
Q 045333           63 GTTWPPRSYTCTFCRREFRSAQALGGHMNVH   93 (225)
Q Consensus        63 ~~~~geKpy~C~~CgK~FsS~qALgGHmr~H   93 (225)
                      .+|+++|||+|.+|||.|.....|..||++|
T Consensus        23 ~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1          23 SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             HHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             hccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4678999999999999999999999999998

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.6e-08  Score=61.45  Aligned_cols=26  Identities=35%  Similarity=0.881  Sum_probs=25.1

Q ss_pred             cceeCCc--cccccCCchhHHHHhhhcC
Q 045333           69 RSYTCTF--CRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHmr~Ht   94 (225)
                      |||.|.+  |+|.|.+..+|..|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            7999999  9999999999999999996

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.4e-08  Score=64.48  Aligned_cols=29  Identities=28%  Similarity=0.639  Sum_probs=27.6

Q ss_pred             eeCCc--cccccCCchhHHHHhhhcCCcchh
Q 045333           71 YTCTF--CRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        71 y~C~~--CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      |.|++  |+|.|.++..|..|||+|++|||.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy   32 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDY   32 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCE
Confidence            78998  999999999999999999999985

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=9.5e-08  Score=58.02  Aligned_cols=27  Identities=22%  Similarity=0.669  Sum_probs=25.9

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcC
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      ||||.|++|||.|.++....+|.++|-
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            699999999999999999999999995

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=7.7e-07  Score=56.06  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=30.1

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCcchh
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRDRAR   99 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgERp~   99 (225)
                      .|.+.|..|||.|+....|++|+..|++|||.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            47889999999999999999999999999985

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.6e-06  Score=53.54  Aligned_cols=29  Identities=21%  Similarity=0.610  Sum_probs=27.3

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      ||||+|++|+..|.++..+.-|.|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            69999999999999999999999999763

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=5.1e-06  Score=49.99  Aligned_cols=28  Identities=29%  Similarity=0.522  Sum_probs=26.3

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      |.|-|..|||.|..+..|++|+.+|++|
T Consensus         1 r~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           1 RVHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             CcchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            4689999999999999999999999986

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.68  E-value=8.2e-06  Score=48.06  Aligned_cols=25  Identities=40%  Similarity=0.874  Sum_probs=23.6

Q ss_pred             eeCCccccccCCchhHHHHhhhcCC
Q 045333           71 YTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        71 y~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      |+|..|.|.|--+++|.+|+|+|+.
T Consensus         1 ykcglcersfveksalsrhqrvhkn   25 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHKN   25 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhcc
Confidence            7999999999999999999999963

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=8.1e-06  Score=48.61  Aligned_cols=26  Identities=27%  Similarity=0.516  Sum_probs=25.0

Q ss_pred             eCCccccccCCchhHHHHhhhcCCcc
Q 045333           72 TCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        72 ~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      +|+.|.|.|-++.-|+.|-|.|+|||
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999986

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.3e-05  Score=48.48  Aligned_cols=29  Identities=28%  Similarity=0.600  Sum_probs=27.6

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      ||||+|.+|...-+.++.|..|.|.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            68999999999999999999999999985

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.3e-05  Score=48.09  Aligned_cols=27  Identities=22%  Similarity=0.627  Sum_probs=25.6

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCC
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~Htg   95 (225)
                      |||+|+.|...-..++.|++|.|+|..
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs~   28 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHSD   28 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCcccccccchhcchhhHhhhhhcccC
Confidence            899999999999999999999999963

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.5e-05  Score=48.18  Aligned_cols=28  Identities=25%  Similarity=0.495  Sum_probs=26.4

Q ss_pred             ceeCCccccccCCchhHHHHhhhcCCcc
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVHRRDR   97 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~HtgER   97 (225)
                      .|.|.+||+.....+-|.+|.|.|+++|
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            3889999999999999999999999986

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=7.1e-05  Score=46.05  Aligned_cols=28  Identities=25%  Similarity=0.678  Sum_probs=26.0

Q ss_pred             cceeCCc--cccccCCchhHHHHh-hhcCCc
Q 045333           69 RSYTCTF--CRREFRSAQALGGHM-NVHRRD   96 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHm-r~HtgE   96 (225)
                      |||.|.+  |.|.|+..+.-.+|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            7999999  999999999999998 999764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=7.3e-05  Score=45.47  Aligned_cols=27  Identities=19%  Similarity=0.664  Sum_probs=24.9

Q ss_pred             cceeCCc--cccccCCchhHHHHhhhcCC
Q 045333           69 RSYTCTF--CRREFRSAQALGGHMNVHRR   95 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHmr~Htg   95 (225)
                      |||.|++  |+|.+...+.|.+||+.|.|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            7999999  99999999999999997754

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00017  Score=43.62  Aligned_cols=29  Identities=31%  Similarity=0.657  Sum_probs=27.3

Q ss_pred             CcceeCCccccccCCchhHHHHhhhcCCc
Q 045333           68 PRSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        68 eKpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      |..|.|..|...|+++-.|.-||-.|+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            56899999999999999999999999986

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.82  E-value=0.0002  Score=43.41  Aligned_cols=28  Identities=25%  Similarity=0.584  Sum_probs=26.3

Q ss_pred             cceeCCc--cccccCCchhHHHHhhhcCCc
Q 045333           69 RSYTCTF--CRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHmr~HtgE   96 (225)
                      |||.|++  |.|.|.+-..|.+|...|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            6899988  999999999999999999986

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00071  Score=44.20  Aligned_cols=28  Identities=18%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             CCCcceeCCccccccCCchhHHHHhhhc
Q 045333           66 WPPRSYTCTFCRREFRSAQALGGHMNVH   93 (225)
Q Consensus        66 ~geKpy~C~~CgK~FsS~qALgGHmr~H   93 (225)
                      +|-|||+|.+|+|.|--...+.+|.-..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhh
Confidence            3679999999999999999999997543

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.27  E-value=0.00077  Score=41.30  Aligned_cols=26  Identities=31%  Similarity=0.710  Sum_probs=23.0

Q ss_pred             ceeCCccccccCCchhHHHHh-hhcCC
Q 045333           70 SYTCTFCRREFRSAQALGGHM-NVHRR   95 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHm-r~Htg   95 (225)
                      ||.|.+|+|.|.++.-|-+|+ +.|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            799999999999999999997 46654

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0015  Score=39.28  Aligned_cols=23  Identities=35%  Similarity=0.829  Sum_probs=21.7

Q ss_pred             ceeCCccccccCCchhHHHHhhh
Q 045333           70 SYTCTFCRREFRSAQALGGHMNV   92 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~   92 (225)
                      ||.|..|.-.|..+.+|..||..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999974

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.71  E-value=0.0018  Score=38.89  Aligned_cols=25  Identities=32%  Similarity=0.699  Sum_probs=23.1

Q ss_pred             cceeCCc--cccccCCchhHHHHhhhc
Q 045333           69 RSYTCTF--CRREFRSAQALGGHMNVH   93 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHmr~H   93 (225)
                      -||+|..  |+|.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4899986  999999999999999988

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0039  Score=37.14  Aligned_cols=27  Identities=30%  Similarity=0.418  Sum_probs=24.6

Q ss_pred             ceeCCccccccCCchhHHHHhhhcCCc
Q 045333           70 SYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      |-+|..|....+++-||..|.|+|..+
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~d   28 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCTD   28 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCCS
T ss_pred             CccCcccccccCcHHHHHHhhccccCC
Confidence            568999999999999999999999753

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0052  Score=37.06  Aligned_cols=28  Identities=21%  Similarity=0.692  Sum_probs=24.2

Q ss_pred             cceeCCccccccCCchhHHHHhhh-cCCc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNV-HRRD   96 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~-HtgE   96 (225)
                      |||+|.+|......+++|+-|..+ |..|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            799999999999999999999864 5544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0033  Score=38.95  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.5

Q ss_pred             CCccccccCCchhHHHHhhhcCCc
Q 045333           73 CTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        73 C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      |.-=+|.|..+.+|..|||.|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            445566799999999999999997

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0046  Score=37.16  Aligned_cols=25  Identities=24%  Similarity=0.689  Sum_probs=22.3

Q ss_pred             cceeCCccccccCCchhHHHHhhhc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVH   93 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~H   93 (225)
                      |||+|++|.---...++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            6999999999999999999998643

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.0058  Score=35.58  Aligned_cols=22  Identities=32%  Similarity=0.760  Sum_probs=21.2

Q ss_pred             ceeCCccccccCCchhHHHHhh
Q 045333           70 SYTCTFCRREFRSAQALGGHMN   91 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr   91 (225)
                      ||+|+-|...|-.+..|..||.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999995

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.19  E-value=0.0096  Score=34.69  Aligned_cols=22  Identities=32%  Similarity=0.933  Sum_probs=20.4

Q ss_pred             eeCCccccccCCchhHHHHhhh
Q 045333           71 YTCTFCRREFRSAQALGGHMNV   92 (225)
Q Consensus        71 y~C~~CgK~FsS~qALgGHmr~   92 (225)
                      |.|++|-|+|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            8899999999999999999864

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.82  E-value=0.02  Score=33.83  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             ceeCCccccccCCchhHHHHhhh
Q 045333           70 SYTCTFCRREFRSAQALGGHMNV   92 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~   92 (225)
                      ||+|..|||.+-++.+|-.|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            79999999999999999999643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.029  Score=37.50  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=23.5

Q ss_pred             cceeCCccccccCCchhHHHHhhhcC
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~Ht   94 (225)
                      --|.|.+|+|.|.....|..|..-|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            36899999999999999999998884

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.033  Score=35.29  Aligned_cols=28  Identities=25%  Similarity=0.585  Sum_probs=25.0

Q ss_pred             CCcceeCCc--cccccCCchhHHHHhhhcC
Q 045333           67 PPRSYTCTF--CRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        67 geKpy~C~~--CgK~FsS~qALgGHmr~Ht   94 (225)
                      .+|||.|..  |+..|.+-..|..|+..|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            379999954  9999999999999998884

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.061  Score=33.50  Aligned_cols=28  Identities=14%  Similarity=0.474  Sum_probs=24.4

Q ss_pred             cceeCCccccccCCchhHHHHhhhcCCc
Q 045333           69 RSYTCTFCRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr~HtgE   96 (225)
                      ..|.|..|+|.|.++..+.+|.-..+|.
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCCC
Confidence            4699999999999999999998777663

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.056  Score=32.29  Aligned_cols=20  Identities=40%  Similarity=0.765  Sum_probs=17.2

Q ss_pred             CCc--cccccCCchhHHHHhhh
Q 045333           73 CTF--CRREFRSAQALGGHMNV   92 (225)
Q Consensus        73 C~~--CgK~FsS~qALgGHmr~   92 (225)
                      |.+  |||.|+++|-|..|++.
T Consensus         3 cdf~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           3 CDFPGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             CSSTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCchhhhccHHHHHhHHHH
Confidence            544  99999999999999864

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.08  E-value=0.062  Score=31.59  Aligned_cols=24  Identities=33%  Similarity=0.764  Sum_probs=21.2

Q ss_pred             eeCCc--cccccCCchhHHHHhhhcC
Q 045333           71 YTCTF--CRREFRSAQALGGHMNVHR   94 (225)
Q Consensus        71 y~C~~--CgK~FsS~qALgGHmr~Ht   94 (225)
                      |.|.+  |+|.|.....|+.|+-.|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            66765  9999999999999998885

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.15  E-value=0.099  Score=30.80  Aligned_cols=23  Identities=22%  Similarity=0.579  Sum_probs=21.4

Q ss_pred             ceeCCccccccCCchhHHHHhhh
Q 045333           70 SYTCTFCRREFRSAQALGGHMNV   92 (225)
Q Consensus        70 py~C~~CgK~FsS~qALgGHmr~   92 (225)
                      .|.|+.|+-...+++.|+.|+|.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            58999999999999999999974

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.83  E-value=0.089  Score=31.10  Aligned_cols=19  Identities=32%  Similarity=0.667  Sum_probs=18.1

Q ss_pred             ccccccCCchhHHHHhhhc
Q 045333           75 FCRREFRSAQALGGHMNVH   93 (225)
Q Consensus        75 ~CgK~FsS~qALgGHmr~H   93 (225)
                      -|.|.|+..+|+.+|+.+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            5999999999999999988

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.19  E-value=0.17  Score=30.46  Aligned_cols=28  Identities=25%  Similarity=0.723  Sum_probs=25.7

Q ss_pred             cceeCCc--cccccCCchhHHHHhhhcCCc
Q 045333           69 RSYTCTF--CRREFRSAQALGGHMNVHRRD   96 (225)
Q Consensus        69 Kpy~C~~--CgK~FsS~qALgGHmr~HtgE   96 (225)
                      |.|-|++  |+..|...-.|..|.-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            6788987  999999999999999999986

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.09  E-value=0.11  Score=36.11  Aligned_cols=27  Identities=26%  Similarity=0.487  Sum_probs=23.5

Q ss_pred             cceeCCccccccCCchhHHHHhh--hcCC
Q 045333           69 RSYTCTFCRREFRSAQALGGHMN--VHRR   95 (225)
Q Consensus        69 Kpy~C~~CgK~FsS~qALgGHmr--~Htg   95 (225)
                      -.|-|-.|+|.|.+-.+|..|++  .|++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKr   42 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKK   42 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHH
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHH
Confidence            46999999999999999999996  5643

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=0.17  Score=31.36  Aligned_cols=13  Identities=15%  Similarity=0.250  Sum_probs=11.3

Q ss_pred             CCCCCCcceeCCc
Q 045333           63 GTTWPPRSYTCTF   75 (225)
Q Consensus        63 ~~~~geKpy~C~~   75 (225)
                      .+|++||||+|++
T Consensus        27 ~~Ht~ekpy~C~i   39 (39)
T d2epsa1          27 QVHTSERPHKCQV   39 (39)
T ss_dssp             HTSCCCCCCCSSS
T ss_pred             CccCCCcCcCCcC
Confidence            4799999999985