Citrus Sinensis ID: 045351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPIISLSKQQI
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccccccccHHHHHHccccccccccccEEEEEcccccEEcHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccEEccccccccHHHHHHHHHHcccEEEEEccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEccccccccccHHHHccHHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEcccHHHHHHHHHccccccccccccccHHccccccccHHHHHHHHHHccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccccccccccccccHHHHHHHHHHHHHccccccEEEEcccccEEcHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHccccEEEEEcccccccccHHHHHHccccccccccccccccEEEEEEcccccccccEEEEEcHcHHHHHHcccccccccccccEEEEEcHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHcccEEcccccHHHHHHHHccccHHHccHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
mdpkngfcsetkifhslrpsiafppettSVTSYVFSLLeshapppdttalidtasrhrilypDLTLRIKTLAYSLKTKYKLSKYDVAFLlsqnsvrvpVLYLSLFSLGvvvspcnpsctipeilrqihlskpviafathdtahkipqlkygtvlldspefeplsatdsldyydddeervRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCtvpyfhsygftcclrslgmgeslvcmGKFDFGRMLKAVEEFRVSHvvlappvvlkmardggtmdgydlSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEfgapiislskqqi
Flexible Loop (DISEMBL)
mdpkngfcSETKIFhslrpsiafppETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHavraarsrpAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLefgapiislskqqi
Low Complexity Region (SEG)
MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIktlayslktkyklskyDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLvaavagghavraarsrpavvLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPIISLSKQQI
Disordered region (IsUnstruct)
**********TKIFHSLRPSIAFPPETTSVTSYVFSLLESH*****TTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPIIS******
Disordered Region (DISOPRED)
**PKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDY*****ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPIISLS****
Disordered Region (DISEMBL)
********SETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPIISLSKQQI
Disordered Region (DISPRO)
****NGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPIISLS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPIISLSKQQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q84P23	562	4-coumarate--CoA ligase-l	yes	no	0.911	0.565	0.395	6e-58
Q7F1X5	542	4-coumarate--CoA ligase-l	yes	no	0.902	0.581	0.385	2e-47
Q8RU95	598	4-coumarate--CoA ligase-l	no	no	0.931	0.543	0.345	1e-43
Q84P25	565	4-coumarate--CoA ligase-l	no	no	0.893	0.552	0.347	1e-43
P0C5B6	550	4-coumarate--CoA ligase-l	no	no	0.922	0.585	0.338	1e-42
Q3E6Y4	552	4-coumarate--CoA ligase-l	no	no	0.922	0.583	0.336	1e-42
Q84P26	550	4-coumarate--CoA ligase-l	no	no	0.928	0.589	0.338	2e-42
Q69RG7	558	4-coumarate--CoA ligase-l	no	no	0.916	0.573	0.347	1e-38
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.928	0.593	0.313	3e-35
Q9M0X9	544	4-coumarate--CoA ligase-l	no	no	0.868	0.556	0.316	7e-32

>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2

 Score =  224 bits (572), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/339 (39%), Positives = 207/339 (61%), Gaps = 21/339 (6%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPP--ETTSVTSYVFSLLESHAPPPDT-------TALI 51
           +D  +GF   T I+HSLRPS++ PP  +  S   +  SLL   +PP          T L+
Sbjct: 11  IDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTYLV 70

Query: 52  DTASRHRILYPDLTLRIKTLAYSLKTKY-KLSKYDVAFLLSQNSVRVPVLYLSLFSLGVV 110
           +++S   + Y +L  R+++LA SL+ ++  L+  +VAF+LS +S+ +PVLYL+L S+GVV
Sbjct: 71  NSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVV 130

Query: 111 VSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIP--QLKYGTVLLDSPEF-EPLSATD 167
           VSP NP  +  E+  Q+ +S+PVIAFAT  T  K+    L  GTVL+DS EF   L+ +D
Sbjct: 131 VSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEFLSWLNRSD 190

Query: 168 SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH--AVRAAR 225
           S           +V V+ SDPAAIL+SSGTTG VKG LLT RNL+A+ A  H   ++   
Sbjct: 191 S-----SSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQDPV 245

Query: 226 SRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPV 285
           +   V L ++P FH +GF   +R++ +GE+LV +G+F+   M KAVE+++V+ + ++PP+
Sbjct: 246 NYDRVGLFSLPLFHVFGFMMMIRAISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPL 305

Query: 286 VLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
           ++ + +   T   YDL S+  +  GGA L   +  ++ Q
Sbjct: 306 IVALVKSELTKK-YDLRSLRSLGCGGAPLGKDIAERFKQ 343

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q7F1X5|4CLL5_ORYSJ 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 184/335 (54%), Gaps = 20/335 (5%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETTSVTS--YVFSLLESHAPPPDTTALIDTASRHR 58
           +D ++GFC+ T+IFHS R     PPE+  +T+  Y FSLL S   P    AL+D A+   
Sbjct: 15  IDSRSGFCAATRIFHSTRAPGDLPPESLPMTAAAYAFSLLSSSTLP-GRPALVDAATGIA 73

Query: 59  ILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSC 118
           I YP     +++LA  L     L   DVA +++ + + VPVL  +L S+G VVSP NP  
Sbjct: 74  ISYPSFLAAVRSLAGGLWCSLGLRPGDVALVVAPSRLEVPVLDFALMSIGAVVSPANPVS 133

Query: 119 TIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEER 178
           T  E   Q+ LS+PV+AFA  + A K+P+     V++ S E+  L+A+D           
Sbjct: 134 TPEEYAHQVALSRPVVAFAAPEVAAKLPE-HVRCVVIGSDEYGRLAASDGRRAAAPAAVA 192

Query: 179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSR----------- 227
           V+     SD AA+LYSSGTTG VK   +T RNL+A ++     R   +R           
Sbjct: 193 VK----QSDTAAVLYSSGTTGRVKAVAITHRNLIALMSLHADNREKVAREAAEAGEEPPP 248

Query: 228 PAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVL 287
           PAV L  +P FH +GF   LRS+ MGE+ V M +FDF   L+A+E +RV+ +  APPV++
Sbjct: 249 PAVTLLPIPLFHVFGFMMVLRSVSMGETSVLMERFDFIAALRAIERYRVTLLPAAPPVLV 308

Query: 288 KMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKY 322
            M +        DLSS+ V+  GGA L   V  ++
Sbjct: 309 AMVKYEEARR-RDLSSLLVIGIGGAPLGREVAEQF 342

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8RU95|4CLL6_ORYSJ 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 188/362 (51%), Gaps = 37/362 (10%)

Query: 4   KNGFCSETKIFHSLRPSIAFPPETT--SVTSYVFSLLESHAPP----PDTTALIDTASRH 57
           ++GFC+ T+ FHSLR     PPE    +V +Y FSLL S APP        AL+D A+  
Sbjct: 41  RSGFCAATRTFHSLRSVGPLPPEELPLTVAAYAFSLLSS-APPLVVAGRGPALVDAATGI 99

Query: 58  RILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPS 117
            + YP    R++ LA  L     L   DVA ++S + + V VLY +L S+GVVVSP NP+
Sbjct: 100 AVSYPAFVARVRFLAGGLWCSLGLRPGDVALVVSPSCLDVAVLYFALMSIGVVVSPANPA 159

Query: 118 CTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEE 177
            T  E   Q+ LS+P IAF   + A ++P+     V++ S  F+ L++  +   +     
Sbjct: 160 STADEYAHQVRLSRPAIAFVAPEVAARLPR-HVSRVVIGSEVFDRLASASAAGGWAAP-- 216

Query: 178 RVRVSVSLSDP--AAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSR-------- 227
               +V++  P  AA+LYSSGTTG VK   +T RNL+A ++  +A+R   +R        
Sbjct: 217 ---PAVAMKQPSTAALLYSSGTTGRVKAVAITHRNLIAQISAYNAIRETVAREAATDAGK 273

Query: 228 -----------PAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRV 276
                       AV L  +P FH  GF    R++  GE+ V M +FD     +AVE +RV
Sbjct: 274 GKPPPPSPSPPAAVTLFPLPLFHVMGFGLLTRTISSGETAVVMRRFDLAAAARAVERYRV 333

Query: 277 SHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLE 336
           + +  APPVV+ + +        DLSS+  +  GGA L   V +++  +  +V  Q+   
Sbjct: 334 TKLSAAPPVVVALTKSDEARR-RDLSSLVAIVVGGAPLGREVSQRFATVFPSV--QIVQS 390

Query: 337 FG 338
           +G
Sbjct: 391 YG 392

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P25|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 179/342 (52%), Gaps = 30/342 (8%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPP-ETTSVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
           +D K+GFC  T IF+S R  +A PP +   VTS++ S      P    T  +D  +  R+
Sbjct: 21  VDRKSGFCESTSIFYSKREPMALPPNQFLDVTSFIAS-----QPHRGKTVFVDAVTGRRL 75

Query: 60  LYPDLTLRIKTLA---YSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNP 116
            +P+L L ++ +A   Y+L  +    K +V  +LS NS+  P++ LS+ SLG +++  NP
Sbjct: 76  SFPELWLGVERVAGCLYALGVR----KGNVVIILSPNSILFPIVSLSVMSLGAIITTANP 131

Query: 117 SCTIPEILRQIHLSKPVIAFATHDTAHKIP---QLKYGTVLLDSPEFEPLSATDSLDYY- 172
             T  EI +QI  S+PV+AF T     K+          VL+D       S  D +    
Sbjct: 132 INTSDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQSYGDRVKLVG 191

Query: 173 --------DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAA 224
                   +  E RV+  V+  D AA+LYSSGTTG  KG +L+ RNL+A V    A RA 
Sbjct: 192 RLETMIETEPSESRVKQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIALV---QAYRAR 248

Query: 225 RSRPAVVLCTVPYFHSYGFTCCLRSL-GMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAP 283
                  +CT+P  H +GF      L  +G ++V + KFD  ++L AVE  R S++ L P
Sbjct: 249 FGLEQRTICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVP 308

Query: 284 PVVLKMARDGGTMDG-YDLSSIEVVASGGAHLTLSVIRKYLQ 324
           P+V+ M      ++  YDLSS+  V +GGA L+  V  K+++
Sbjct: 309 PIVVAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVE 350

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 179/340 (52%), Gaps = 18/340 (5%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPE-TTSVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
           +DP++GFC     F+S R  ++ PP  +  VT+++     S  P    TA ID A+   +
Sbjct: 10  VDPRSGFCKSNSTFYSKRQPLSLPPNLSRDVTTFI-----SSQPHRGKTAFIDAATGQCL 64

Query: 60  LYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
            + DL   +  +A  L  +  + + DV  +LS NS+ +PV+ LS+ SLG V +  N   T
Sbjct: 65  TFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNT 124

Query: 120 IPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSAT-------DSLDYY 172
             EI +QI  S P + F T   A K+P +    VL D   ++ L++          +   
Sbjct: 125 SGEISKQIADSNPTLVFTTRQLAPKLP-VAISVVLTDDEVYQELTSAIRVVGILSEMVKK 183

Query: 173 DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVL 232
           +   +RVR  V+  D A +LYSSGTTG  KG + + RNL A VA    +     R  + +
Sbjct: 184 EPSGQRVRDRVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVA--RFISDNLKRDDIFI 241

Query: 233 CTVPYFHSYG-FTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR 291
           CTVP FH+YG  T  + ++ +G ++V + +F    M+ AVE+ R + + LAPPV++ M  
Sbjct: 242 CTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVAMIN 301

Query: 292 DGGTMDG-YDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN 330
           D   +   YDLSS++ V  GGA L+  V   +L+   TV+
Sbjct: 302 DADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVD 341

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q3E6Y4|4CLL3_ARATH 4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 178/342 (52%), Gaps = 20/342 (5%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPE-TTSVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
           +DP++GFC     F+S R  +  PP  +  VT+++     S  P   TTA ID ++ HR+
Sbjct: 10  VDPRSGFCKSNSTFYSKRNPLCLPPNPSLDVTTFI-----SSQPQRGTTAFIDASTGHRL 64

Query: 60  LYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
            + DL   +  +A  L  +  + + DV  +LS NS+ +PV+ LS+ SLG VV+  N   T
Sbjct: 65  TFSDLWRVVDRVADCLYHEVGIRRGDVVLILSPNSIYIPVVCLSVMSLGAVVTTANTLNT 124

Query: 120 IPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYY------- 172
             EI +QI  S P + F T   A K+       VL D  + + +  T  +          
Sbjct: 125 SGEISKQIAQSNPTLVFTTSQLAPKLAA-AISVVLTDEEDEKRVELTSGVRVVGILSEMM 183

Query: 173 --DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAV 230
             +   +RVR  V+  D A +LYSSGTTG  KG + + RNL A VA    +     R  +
Sbjct: 184 KKETSGQRVRDRVNQDDTAMMLYSSGTTGTSKGVISSHRNLTAYVA--KYIDDKWKRDEI 241

Query: 231 VLCTVPYFHSYGFTC-CLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKM 289
            +CTVP FHS+G     + S+  G ++V + +F    M++AVE+++ + + LAPPV++ M
Sbjct: 242 FVCTVPMFHSFGLLAFAMGSVASGSTVVILRRFGLDDMMQAVEKYKATILSLAPPVLVAM 301

Query: 290 ARDGGTMDG-YDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN 330
                 +   YDL+S+  V  GGA L+  V+  +L+   TVN
Sbjct: 302 INGADQLKAKYDLTSLRKVRCGGAPLSKEVMDSFLEKYPTVN 343

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P26|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 177/340 (52%), Gaps = 16/340 (4%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFP-PETTSVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
           +DP+NGFC+    F+S R  +A P  E+  +T+++     S       TA ID A+ HRI
Sbjct: 11  IDPRNGFCTSNSTFYSKRKPLALPSKESLDITTFI-----SSQTYRGKTAFIDAATDHRI 65

Query: 60  LYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
            + DL + +  +A  L     + + DV  +LS N++ +P++ LS+ SLG V++  NP  T
Sbjct: 66  SFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNT 125

Query: 120 IPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVL------LDSPE-FEPLSATDSLDYY 172
             EILRQI  S P +AF T + A KI       VL      L  P   + +     +   
Sbjct: 126 ASEILRQIADSNPKLAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLTEMMKK 185

Query: 173 DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVL 232
           +   + VR  V   D A +LYSSGTTG  KG   +  NL+A VA  +            +
Sbjct: 186 EPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVA-RYIAEPFEQPQQTFI 244

Query: 233 CTVPYFHSYG-FTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR 291
           CTVP FH++G     L +L +G ++V + +FD G M+ AVE++R + ++L PPV++ M  
Sbjct: 245 CTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMIN 304

Query: 292 DGGT-MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN 330
                M  YD+S +  V  GGA L+  V + +++   TV+
Sbjct: 305 KADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVD 344

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q69RG7|4CLL7_ORYSJ 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 177/354 (50%), Gaps = 34/354 (9%)

Query: 4   KNGFCSETKIFHSLR--------------PSIAFPPETTSVTSYVFSLLESHAPPPDTTA 49
           + G+C+ TK F SLR              P  AF     S +S   SLL ++       A
Sbjct: 16  RTGYCAATKSFRSLRPPVPLPPPDVPLSFPEFAFSLLPRSSSSSSSSLLPAN------PA 69

Query: 50  LIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGV 109
           L+D A+   + +     R++ LA +L+++  L   DVAF+L+   + VPVLY +L S+G 
Sbjct: 70  LVDAATGEAVSFQAFLSRVRALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFALLSIGA 129

Query: 110 VVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSL 169
           VVSP NP+ T  E+ R + LS   +AFA   TA K+P      VLLDSP F  L      
Sbjct: 130 VVSPANPALTPAEVSRLVSLSGASVAFAVSSTATKLPAGLTTVVLLDSPHFRSL--LMDC 187

Query: 170 DYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA 229
                 E    V V  S+ AAI YSSGTTG VK A L  R+ +A VAG HA+R A++R  
Sbjct: 188 GQAQGQEPLPVVVVRQSETAAIQYSSGTTGRVKAAALPHRSFIAMVAGFHALR-AKAREV 246

Query: 230 VVLCTVPYFHSYGFTCCLRSLGMGESLV----CMGKFDFGRMLKAVEEFRVSHVVLAPPV 285
             L   P FHS GF   L+ + +G + V     + +     +++A E + V  +  +PPV
Sbjct: 247 RTLLGAPMFHSMGFLFVLQGVALGATTVVVTDAVARAGIRGLVEAAERWAVMDMTASPPV 306

Query: 286 VLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGA 339
           VL M     T     L ++E +  GGA L    I ++ +  R  +  LC+ +G+
Sbjct: 307 VLGM-----TKQRCRLPALERITCGGAPLPAPAIERFRR--RFPHVDLCMGYGS 353

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 168/338 (49%), Gaps = 14/338 (4%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPE-TTSVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
           ++ ++GFC+    F+S R  I  PP  +  VT+++ S  ++H       A ID ++   +
Sbjct: 4   VNSRSGFCNSNSTFYSKRTPIPLPPNPSLDVTTFISS--QAHR---GRIAFIDASTGQNL 58

Query: 60  LYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
            + +L   ++++A  L ++  + K  V  LLS NS+  PV+ LS+ SLG +++  NP  T
Sbjct: 59  TFTELWRAVESVADCL-SEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNT 117

Query: 120 IPEILRQIHLSKPVIAFATHDTAHKIPQL--KYGTVLLDSPEFEPLSATDSLDYYDDDE- 176
             EI +QI  S PV+AF T     KI     K   VL+D    + +     L      E 
Sbjct: 118 SNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKEP 177

Query: 177 --ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCT 234
              RV+  V   D A +LYSSGTTGM KG + + RNL+A V        +       +CT
Sbjct: 178 SGNRVKERVDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQRFICT 237

Query: 235 VPYFHSYGFTCCLRS-LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG 293
           VP FH YG        L  G +++ + KF+   M+ A+ +++ + + L PP+++ M    
Sbjct: 238 VPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNGA 297

Query: 294 GTMDG-YDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN 330
             +   YDLSS+  V  GGA L+  V   + +   TV 
Sbjct: 298 DQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVK 335

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  138 bits (347), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 165/325 (50%), Gaps = 22/325 (6%)

Query: 4   KNGFCSETKIFHSLRPSIAFPPE-TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYP 62
           K+G+  +  I+ SLRP++  P +  TS+ S++F    S+   P   A+ D+ +   + + 
Sbjct: 3   KSGYGRDG-IYRSLRPTLVLPKDPNTSLVSFLFRNSSSY---PSKLAIADSDTGDSLTFS 58

Query: 63  DLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPE 122
            L   +  LA+    +  + K DV  + + NS + P+ +L++ ++G V +  NP  T+ E
Sbjct: 59  QLKSAVARLAHGFH-RLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNE 117

Query: 123 ILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLL---DSPEFEPLSATDSLDYYDDDE--- 176
           + +QI  S P I  + +    KI       VLL   D+ E  P S +  L + +  E   
Sbjct: 118 VSKQIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILSFDNVMELSE 177

Query: 177 ---ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAA---VAGGHAVRAARSRPAV 230
              E   V +  SD AA+LYSSGTTG  KG  LT  N +AA   V     +        V
Sbjct: 178 PVSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYH--GV 235

Query: 231 VLCTVPYFHSYGFTCCLRS-LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKM 289
            LC +P FH +G      S L  G +LV M +F+   +LK +E+FRV+H+ + PPV L +
Sbjct: 236 FLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLAL 295

Query: 290 ARDGGTMDGYDLSSIEVVASGGAHL 314
           ++    +  +DLSS++ + SG A L
Sbjct: 296 SKQ-SIVKKFDLSSLKYIGSGAAPL 319

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
224110750	552	acyl:coa ligase [Populus trichocarpa] gi	0.914	0.577	0.546	4e-84
255547814	548	AMP dependent CoA ligase, putative [Rici	0.896	0.571	0.510	1e-82
225425844	550	PREDICTED: 4-coumarate--CoA ligase-like	0.896	0.569	0.487	5e-81
224133070	548	4-coumarate-coa ligase [Populus trichoca	0.939	0.598	0.481	4e-80
224149251	341	predicted protein [Populus trichocarpa]	0.939	0.961	0.481	5e-80
444475573	540	4-coumarate CoA ligase [Lonicera japonic	0.899	0.581	0.513	2e-79
147815841	562	hypothetical protein VITISV_009068 [Viti	0.936	0.581	0.467	1e-78
225452165	543	PREDICTED: 4-coumarate--CoA ligase-like	0.873	0.561	0.493	3e-74
255536983	540	AMP dependent CoA ligase, putative [Rici	0.891	0.575	0.490	8e-72
147768422	562	hypothetical protein VITISV_007923 [Viti	0.939	0.583	0.450	5e-70

>gi|224110750|ref|XP_002315623.1| acyl:coa ligase [Populus trichocarpa] gi|222864663|gb|EEF01794.1| acyl:coa ligase [Populus trichocarpa]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 178/326 (54%), Positives = 223/326 (68%), Gaps = 7/326 (2%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETT--SVTSYVFSLLESHAP-PPDTTALIDTASRH 57
           +DPK+GFCS+T  +HSLRP +  PP TT  S T Y  SLL    P PP TTAL+D  +  
Sbjct: 9   IDPKSGFCSKTNTYHSLRPHLQLPPITTPVSATEYAISLLLYSFPSPPQTTALLDAVTGR 68

Query: 58  RILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPS 117
           RI +P+L    +TLA SL  +++L K D AF+LS NS+ +P+LYLSLF+LGVV+SP NP 
Sbjct: 69  RISFPELIHFTETLASSLLNRFRLKKGDTAFILSPNSIHIPILYLSLFTLGVVISPSNPL 128

Query: 118 CTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEE 177
            +  EIL Q +LSKPVIAF T  TAHKIP     T+LLDSPEFE L  + +    +  E 
Sbjct: 129 SSEQEILHQTNLSKPVIAFVTSQTAHKIPYSVKKTILLDSPEFESLMTSQTQGTVNGLE- 187

Query: 178 RVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSR-PAVVLCTVP 236
             RV V  SDPAAILYSSGTTG  KG LLT RN ++ +A   A R  +++  AV LCTVP
Sbjct: 188 --RVRVYQSDPAAILYSSGTTGRFKGVLLTHRNFISMLAATIATRGVKNKITAVTLCTVP 245

Query: 237 YFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM 296
           YFH+YGF  CLR   MG +LV MG+FD   ML A++++RVSHV +APPVV+ M ++ G M
Sbjct: 246 YFHAYGFVYCLRLAAMGNTLVSMGRFDLSAMLSAIQDYRVSHVAVAPPVVVAMVKNVGAM 305

Query: 297 DGYDLSSIEVVASGGAHLTLSVIRKY 322
           DGYDLSS+EVVA GGA L  SV+  +
Sbjct: 306 DGYDLSSLEVVACGGAPLRKSVLELF 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547814|ref|XP_002514964.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223546015|gb|EEF47518.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/325 (51%), Positives = 217/325 (66%), Gaps = 12/325 (3%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETT--SVTSYVFSLLESHAPPPDTTALIDTASRHR 58
           +DPK+GFCS+TK F+SLR     PP  +  SVT ++FSLL+S  P   T ALID  + HR
Sbjct: 12  IDPKSGFCSKTKTFYSLRSLAQLPPLASPISVTDFIFSLLQSFPPSAATPALIDAVTGHR 71

Query: 59  ILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSC 118
           I YP+  +  K+L+  L     L K D AF+LS NSV +P++  SL SLGV+VSP NP+ 
Sbjct: 72  ISYPEFIILTKSLSSYLHIVLGLRKGDTAFILSPNSVHIPIICFSLLSLGVIVSPGNPAS 131

Query: 119 TIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEER 178
           +  EI  QIHLSKPV+AF T  TAHKI  L   T+++DS  FE + +         + E 
Sbjct: 132 SESEIQHQIHLSKPVVAFVTGHTAHKITNLN--TIVIDSHWFESIRS-------HREPEP 182

Query: 179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYF 238
           V+  +  SDPAAILYSSGTTG VKG +LT RN     A GHAVRA R  P V  C VPYF
Sbjct: 183 VKPRIYQSDPAAILYSSGTTGRVKGVILTHRNFTYVAAAGHAVRAPRQTPPVSFCVVPYF 242

Query: 239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR-DGGTMD 297
           H YG +  +R+L +GE+LV MG+FD   MLKA+++FR++H+ LAPPVV+ MA+ + G +D
Sbjct: 243 HVYGLSYFIRTLTVGETLVSMGRFDMKMMLKAIQDFRITHMALAPPVVVAMAKGNNGMVD 302

Query: 298 GYDLSSIEVVASGGAHLTLSVIRKY 322
           GYDLSS+EVV  GGA L  SV++++
Sbjct: 303 GYDLSSLEVVGCGGAPLRESVVQQF 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425844|ref|XP_002265545.1| PREDICTED: 4-coumarate--CoA ligase-like 9 [Vitis vinifera] gi|297738374|emb|CBI27575.3| unnamed protein product [Vitis vinifera]

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 157/322 (48%), Positives = 214/322 (66%), Gaps = 9/322 (2%)

Query: 3   PKNGFCSETKIFHSLRPSIAFPPETT--SVTSYVFSLLESHAPPPDTTALIDTASRHRIL 60
           P  GFCS+T I+HSLRP    PPET   S++ YVFS L + + P    A ID  +   I 
Sbjct: 14  PNTGFCSKTMIYHSLRPHPPLPPETAPLSLSDYVFSHLSTSSAPETAVAFIDATTGRSIS 73

Query: 61  YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           +  L    +TLA SL+ +  L++ D A ++S NS+ VPVLY +LFSLGV+VSP NP+ T 
Sbjct: 74  FSQLVRFSETLAASLQRRLGLTRGDSALVISPNSLHVPVLYFALFSLGVIVSPSNPASTE 133

Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVR 180
            EI RQI L KPVIAFAT  TAHK+P LK+ TV+LDSPEF  +   ++ +         R
Sbjct: 134 SEISRQIELCKPVIAFATSSTAHKVPSLKFSTVVLDSPEFHSMMTVETGNLR-------R 186

Query: 181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHS 240
           V VS SDPA ILYSSGTTG VKG +LT RN ++AVAG + +R  R+ P V +CTVPYFH 
Sbjct: 187 VRVSQSDPAMILYSSGTTGRVKGVVLTHRNWISAVAGANVLRQERASPTVTMCTVPYFHV 246

Query: 241 YGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
           YG   C+R++ +G+S+V + + +   ++ AV+EFRV+H+ +APPV++ MA  G  +DG D
Sbjct: 247 YGCGLCMRAVALGQSVVAIERLNVRSLMSAVQEFRVTHLAVAPPVIVMMANGGDLVDGCD 306

Query: 301 LSSIEVVASGGAHLTLSVIRKY 322
           L S+E V  GGA ++ +VI ++
Sbjct: 307 LRSLEAVLCGGAPVSTAVIERF 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133070|ref|XP_002327954.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224133074|ref|XP_002327955.1| acyl:coa ligase [Populus trichocarpa] gi|222837363|gb|EEE75742.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222837364|gb|EEE75743.1| acyl:coa ligase [Populus trichocarpa]

 Score =  304 bits (779), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/332 (48%), Positives = 221/332 (66%), Gaps = 4/332 (1%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETT--SVTSYVFSLLESHAPPPDTTALIDTASRHR 58
           ++PK+GF S  K FHSLRP I  PPE T  S   Y  SL  +H+P PD+ A+I++++  +
Sbjct: 9   INPKSGFNSSAKTFHSLRPPIHLPPEETPFSAADYALSLHANHSPWPDSLAIINSSTSQK 68

Query: 59  ILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSC 118
           + Y D   RIK+L   L+   +L K D AF+L  NS++VP+LY SL SLGVV+SP NP  
Sbjct: 69  LSYSDFIERIKSLTLYLQNVTQLRKNDTAFILCPNSIQVPILYFSLLSLGVVISPANPIS 128

Query: 119 TIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEER 178
           T  EI  QI LS PVIAFA   T HK+P+LK+GT+L+DSPEF+ +  T S       ++ 
Sbjct: 129 TESEISHQISLSNPVIAFAISKTCHKLPKLKHGTILIDSPEFDSI-ITMSPATTTARQDL 187

Query: 179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYF 238
            +V+V+ SD AAI++SSGTTG VKG +LT RNL+A +AG +  +  R  P V+L TVPYF
Sbjct: 188 EKVTVNQSDLAAIMFSSGTTGKVKGVMLTHRNLMAVIAGYYPFKQERKSPTVMLYTVPYF 247

Query: 239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG 298
           H +GF    +S+ + E++V M +FD  +ML+AVE+FRV+H+ +APPVV+ MA+   T DG
Sbjct: 248 HVFGFFYSFKSVALSETVVVMERFDLKKMLRAVEKFRVTHLAVAPPVVVAMAKSDLT-DG 306

Query: 299 YDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN 330
           YDL S+E V  GGA L   V++ +     TV+
Sbjct: 307 YDLRSLETVGCGGAPLGKDVMKVFADRFPTVD 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224149251|ref|XP_002336775.1| predicted protein [Populus trichocarpa] gi|222836688|gb|EEE75081.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 160/332 (48%), Positives = 219/332 (65%), Gaps = 4/332 (1%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETT--SVTSYVFSLLESHAPPPDTTALIDTASRHR 58
           ++PK+GF S  K FHSLRP I  PPE T  S   Y  SL  +H+P PD+ A+I++++  +
Sbjct: 9   INPKSGFNSSAKTFHSLRPPIHLPPEETPFSAADYALSLHANHSPWPDSLAIINSSTSQK 68

Query: 59  ILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSC 118
           + Y D   RIK+L   L+   +L K D AF+L  NS++VP+LY SL SLGVV+SP N   
Sbjct: 69  LSYSDFIERIKSLTLYLQNVTQLRKNDTAFILCPNSIKVPILYFSLLSLGVVISPANLIS 128

Query: 119 TIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEER 178
           T  EI  QI LS PVIAFA   T HK+P+LKYGT+L+DSPEF+ +  T S       ++ 
Sbjct: 129 TESEISHQISLSSPVIAFAISKTCHKLPKLKYGTILIDSPEFDSI-ITMSPATTTTRQDL 187

Query: 179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYF 238
            +V+V+ SD AAI++SSGTTG VKG LLT RNL+A +AG +  +  R  P V+L TVPYF
Sbjct: 188 EKVTVNQSDLAAIMFSSGTTGKVKGVLLTHRNLMAVIAGYYPFKQERKSPTVLLYTVPYF 247

Query: 239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG 298
           H +GF    +S+ + E++V M +FD  +ML+AVE+FRV+H+ +APPVV+ M +   T DG
Sbjct: 248 HVFGFFYSFKSIALSETVVVMERFDLKKMLRAVEKFRVTHLAVAPPVVVAMTKSDLT-DG 306

Query: 299 YDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN 330
           YDL S+E V  GGA L   V++ +     TV+
Sbjct: 307 YDLRSLETVGCGGAPLGKDVMKVFADRFPTVD 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444475573|gb|AGE10595.1| 4-coumarate CoA ligase [Lonicera japonica]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/323 (51%), Positives = 217/323 (67%), Gaps = 9/323 (2%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSL-LESHAPPPDTTALIDTASRHRI 59
            DP +GF S+TK FHSL P +  PPET  ++S  +SL L+  +P PD+T LID+A+  R+
Sbjct: 4   FDPNSGFSSQTKTFHSLTPPLPLPPETALISSATYSLSLQLTSPWPDSTXLIDSATGQRL 63

Query: 60  LYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
            Y   T +   L+ SL++   LSK DVAF+LS NS+++P+LY SL SLGV++SP NPS T
Sbjct: 64  SYSQFTTQTNNLSSSLQSHLGLSKGDVAFILSLNSLQIPLLYFSLLSLGVIISPSNPSST 123

Query: 120 IPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERV 179
             EI RQI LSKPVIAFAT  T+HKIP L++GTVL+DSPEF  ++ +          E  
Sbjct: 124 ESEISRQIKLSKPVIAFATSATSHKIPALRHGTVLIDSPEFVSMTTSSG-------RELS 176

Query: 180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFH 239
            V VS  D AAI+YSSGTTG VKG +LT RNL A VA  HA+R  R  PAVVL T+PYFH
Sbjct: 177 CVGVSQCDIAAIMYSSGTTGQVKGVMLTHRNLTAIVANYHALRPERKSPAVVLYTMPYFH 236

Query: 240 SYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGY 299
             G  CC++S+ + E++V M +F+  RML+AVEE RV++V +APPVV+ M +   T + Y
Sbjct: 237 VIGLFCCMKSVALSETVVVMERFNLKRMLRAVEELRVTNVAMAPPVVVAMTKAEVTKE-Y 295

Query: 300 DLSSIEVVASGGAHLTLSVIRKY 322
           DL S+E    GGA L   VI  +
Sbjct: 296 DLKSLEGFGCGGAPLGKDVIAAF 318

Source: Lonicera japonica

Species: Lonicera japonica

Genus: Lonicera

Family: Caprifoliaceae

Order: Dipsacales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815841|emb|CAN65888.1| hypothetical protein VITISV_009068 [Vitis vinifera]

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/338 (46%), Positives = 218/338 (64%), Gaps = 11/338 (3%)

Query: 3   PKNGFCSETKIFHSLRPSIAFPPETT--SVTSYVFSLLESHAPPPDTTALIDTASRHRIL 60
           P  GFCS+T I+HSLRP    PPET   S++ YVFS L + + P    A ID  +   I 
Sbjct: 14  PNTGFCSKTMIYHSLRPHPPLPPETAPLSLSDYVFSHLSTSSAPETAAAFIDATTGRSIS 73

Query: 61  YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           +  L    +TLA SL+ +  L++ D A ++S NS+ VPVLY +LFSLGV+VSP NP+ T 
Sbjct: 74  FSQLVRFSETLAASLQRRLGLTRGDSALVISPNSLHVPVLYFALFSLGVIVSPSNPASTE 133

Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVR 180
            EI RQI L KPVIAFAT  TAHK+P LK+ TV+L SPEF  +   ++ +         R
Sbjct: 134 SEISRQIELCKPVIAFATSSTAHKVPSLKFSTVVLXSPEFHSMMTVETGNLR-------R 186

Query: 181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHS 240
           V VS SDPA ILYSSGTTG VKG +LT RN ++AVAG + +R  R+   V +CTVPYFH 
Sbjct: 187 VRVSQSDPAMILYSSGTTGRVKGVVLTHRNWISAVAGANVLRQERASLTVTMCTVPYFHV 246

Query: 241 YGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
           YG   C+R++ +G+S+V + + +   ++ AV+EFRV+H+ +APPV++ MA  G  +DG D
Sbjct: 247 YGCGLCMRAVALGQSVVAIERLNVRSLMSAVQEFRVTHLAVAPPVIVMMANGGDLVDGCD 306

Query: 301 LSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFG 338
           L S+E V   GA ++ +VI ++ +  R  N Q+   +G
Sbjct: 307 LRSLEAVLCSGAPVSTAVIERFTK--RFPNVQVTQAYG 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452165|ref|XP_002270592.1| PREDICTED: 4-coumarate--CoA ligase-like 9 [Vitis vinifera]

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/316 (49%), Positives = 208/316 (65%), Gaps = 11/316 (3%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPE--TTSVTSYVFSLLESHAPPPDTTALIDTASRHR 58
           +DPK+GFCS TK FHSL+P++  PP+    S  +Y FSL  S    PD+ ALI++ + HR
Sbjct: 8   IDPKSGFCSATKTFHSLKPTVELPPQHLLLSADAYAFSL-RSGLGCPDSAALINSTTGHR 66

Query: 59  ILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSC 118
           +LY +  LR KTLA  L+T   LSK D AF+LS N ++VP+LY SL SLGV++SP NP  
Sbjct: 67  LLYSEFALRSKTLAAYLQTVIGLSKGDTAFVLSSNLIQVPILYFSLLSLGVIISPANPIN 126

Query: 119 TIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEER 178
           T  EI R I L KPVIAF+    AHK+P L + TV++DS EF+ +             E 
Sbjct: 127 TQSEISRLIELCKPVIAFSISTAAHKLPSLHHRTVIIDSFEFDSMMT-------GPIREL 179

Query: 179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYF 238
           V V VS SD AAI+YSSGTTG VKG +LT RNL+A  A  H  ++ RS P V+L TVP+F
Sbjct: 180 VPVEVSQSDLAAIMYSSGTTGRVKGVMLTHRNLIAMTASIHEGQSVRSSPDVLLYTVPFF 239

Query: 239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG 298
           H  GF  C++S+ + E++V M +FD  RML  VE+F+V+H+ + PPV++ MA+ G   D 
Sbjct: 240 HMIGFFYCVKSVALNETVVVMERFDLRRMLTLVEKFKVTHMAVVPPVLVAMAK-GDATDN 298

Query: 299 YDLSSIEVVASGGAHL 314
            DL+S+E V+ GGA L
Sbjct: 299 NDLTSLESVSCGGAPL 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536983|ref|XP_002509558.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223549457|gb|EEF50945.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  276 bits (707), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 158/322 (49%), Positives = 206/322 (63%), Gaps = 11/322 (3%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRIL 60
           +DPK+GF   TKIFHSLRP++  P E  S++   ++L  S +P   + ALID++S H I 
Sbjct: 9   VDPKSGFNRITKIFHSLRPTVDLPSEDASISVADYAL--SSSPDFGSLALIDSSSGHGIS 66

Query: 61  YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           Y D  L  K+L   L    KLSK DVAF+L   S ++P+LY SL SLGV++SP NP  T 
Sbjct: 67  YSDFYLFTKSLTCYLHNVIKLSKNDVAFVLCPKSTKIPILYFSLLSLGVIISPSNPLNTE 126

Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVR 180
            EI RQI LSKPVIAFAT  TAHKIP+L + T+LLDSPEF  +  T    +  D     +
Sbjct: 127 LEISRQISLSKPVIAFATSSTAHKIPKLNHKTILLDSPEFNSILTTSCPTHELD-----K 181

Query: 181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHS 240
           V+V  SD A I YSSGTTG VK  +LT RNL A V G  A++  +   AV L  VPYFH 
Sbjct: 182 VTVRQSDLAGIFYSSGTTGKVKAVMLTHRNLTAVVGGYLALKQEK---AVTLNPVPYFHV 238

Query: 241 YGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
           YGF   L+S+ + E +V M KF+  +ML+AV+EFRV+ + +APP+V++M +DG T D YD
Sbjct: 239 YGFFYSLKSVALREVVVVMEKFELKKMLRAVQEFRVTQLAVAPPIVVQMVKDGLT-DCYD 297

Query: 301 LSSIEVVASGGAHLTLSVIRKY 322
           L S++ V  G A L   VI  +
Sbjct: 298 LRSLQAVGCGAAPLGRDVIAAF 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768422|emb|CAN75661.1| hypothetical protein VITISV_007923 [Vitis vinifera]

 Score =  271 bits (692), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 156/346 (45%), Positives = 218/346 (63%), Gaps = 18/346 (5%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPE--TTSVTSYVFSLLES--HAPPPDTTALIDTASR 56
           +DPK+GF   TK +HSLRP + FPP+    S+  YV SLL S   +P   T  LID +S 
Sbjct: 10  IDPKSGFSPTTKTYHSLRPPVPFPPKHRPLSLAEYVISLLRSAPDSPLETTNVLIDASSD 69

Query: 57  HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNP 116
           +R+ Y     ++++LA SL+    LSK D AF+L   S+++PV+Y SL SLGV +SP NP
Sbjct: 70  YRLSYSQFLRQVQSLAASLQRITGLSKGDTAFILCPPSLKIPVIYFSLLSLGVTISPTNP 129

Query: 117 SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDE 176
             +  E+  QIHL KP IAFA+  TAHK+P L+ GTVL+DS EF+ +   +   Y     
Sbjct: 130 LGSDSEVSHQIHLCKPAIAFASSKTAHKLPSLRLGTVLVDSLEFDSMMTENGAGYGK--- 186

Query: 177 ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS----RPAVVL 232
              RV VS SDPAAILYSSGTTG VKG LLT RNL+  +AG H  R  +     RP V L
Sbjct: 187 ---RVEVSQSDPAAILYSSGTTGRVKGVLLTHRNLITLIAGFHHNRLEKEEDGPRP-VSL 242

Query: 233 CTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARD 292
            T+P FH +GF   +R++ + E+LV M +FDF  MLKAVE++R++++ ++PP+V+ +A+ 
Sbjct: 243 FTLPLFHVFGFFMLVRAVSLAETLVLMERFDFENMLKAVEKYRITYMPVSPPLVVALAKS 302

Query: 293 GGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFG 338
              +  YDLSS++++ SGGA L   V  ++    R  N Q+   +G
Sbjct: 303 -EFVGKYDLSSLQLLGSGGAPLGKEVSERFSA--RFPNVQMVQGYG 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.914	0.567	0.369	9.5e-50
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.928	0.589	0.329	2.3e-39
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.922	0.585	0.320	3.7e-39
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.902	0.557	0.324	7.8e-39
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.925	0.591	0.302	8.4e-35
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.905	0.558	0.286	1.3e-29
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.873	0.560	0.294	3e-29
TAIR|locus:2094771	570	4CL5 "4-coumarate:CoA ligase 5	0.856	0.524	0.277	5.4e-24
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.851	0.529	0.280	1.4e-22
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.862	0.541	0.268	1.3e-21

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 125/338 (36%), Positives = 186/338 (55%)

Query:     1 MDPKNGFCSETKIFHSLRPSIAFPP--ETTSVTSYVFSLLESHAPPPDT-------TALI 51
             +D  +GF   T I+HSLRPS++ PP  +  S   +  SLL   +PP          T L+
Sbjct:    11 IDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTYLV 70

Query:    52 DTASRHRILYPDLTLRIXXXXXXXXXXX-XXXXXDVAFLLSQNSVRVPVLYLSLFSLGVV 110
             +++S   + Y +L  R+                 +VAF+LS +S+ +PVLYL+L S+GVV
Sbjct:    71 NSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVV 130

Query:   111 VSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ--LKYGTVLLDSPEFEPLSATDS 168
             VSP NP  +  E+  Q+ +S+PVIAFAT  T  K+    L  GTVL+DS EF  LS  + 
Sbjct:   131 VSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEF--LSWLNR 188

Query:   169 LDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXX--X 226
              D         +V V+ SDPAAIL+SSGTTG VKG LLT RNL                 
Sbjct:   189 SD--SSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQDPVN 246

Query:   227 XXXXXLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVV 286
                  L ++P FH +GF   +R++ +GE+LV +G+F+   M KAVE+++V+ + ++PP++
Sbjct:   247 YDRVGLFSLPLFHVFGFMMMIRAISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query:   287 LKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
             + + +   T   YDL S+  +  GGA L   +  ++ Q
Sbjct:   307 VALVKSELTKK-YDLRSLRSLGCGGAPLGKDIAERFKQ 343

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 112/340 (32%), Positives = 171/340 (50%)

Query:     1 MDPKNGFCSETKIFHSLRPSIAFPP-ETTSVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
             +DP+NGFC+    F+S R  +A P  E+  +T+++ S  +++      TA ID A+ HRI
Sbjct:    11 IDPRNGFCTSNSTFYSKRKPLALPSKESLDITTFISS--QTYR---GKTAFIDAATDHRI 65

Query:    60 LYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
              + DL + +                DV  +LS N++ +P++ LS+ SLG V++  NP  T
Sbjct:    66 SFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNT 125

Query:   120 IPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVL--LDSPEFEP--LSATDSLDYYDDD 175
               EILRQI  S P +AF T + A KI       VL  ++     P  L    +L      
Sbjct:   126 ASEILRQIADSNPKLAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLTEMMKK 185

Query:   176 E---ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXL 232
             E   + VR  V   D A +LYSSGTTG  KG   +  NL                    +
Sbjct:   186 EPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIAEPFEQPQQTF-I 244

Query:   233 CTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR 291
             CTVP FH++G     L +L +G ++V + +FD G M+ AVE++R + ++L PPV++ M  
Sbjct:   245 CTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMIN 304

Query:   292 DGGT-MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN 330
                  M  YD+S +  V  GGA L+  V + +++   TV+
Sbjct:   305 KADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVD 344

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 109/340 (32%), Positives = 167/340 (49%)

Query:     1 MDPKNGFCSETKIFHSLRPSIAFPPETT-SVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
             +DP++GFC     F+S R  ++ PP  +  VT+++     S  P    TA ID A+   +
Sbjct:    10 VDPRSGFCKSNSTFYSKRQPLSLPPNLSRDVTTFI-----SSQPHRGKTAFIDAATGQCL 64

Query:    60 LYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
              + DL   +                DV  +LS NS+ +PV+ LS+ SLG V +  N   T
Sbjct:    65 TFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNT 124

Query:   120 IPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSAT-------DSLDYY 172
               EI +QI  S P + F T   A K+P +    VL D   ++ L++          +   
Sbjct:   125 SGEISKQIADSNPTLVFTTRQLAPKLP-VAISVVLTDDEVYQELTSAIRVVGILSEMVKK 183

Query:   173 DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXL 232
             +   +RVR  V+  D A +LYSSGTTG  KG + + RNL                    +
Sbjct:   184 EPSGQRVRDRVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKRDDIF--I 241

Query:   233 CTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR 291
             CTVP FH+YG  T  + ++ +G ++V + +F    M+ AVE+ R + + LAPPV++ M  
Sbjct:   242 CTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVAMIN 301

Query:   292 DGGTMDG-YDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN 330
             D   +   YDLSS++ V  GGA L+  V   +L+   TV+
Sbjct:   302 DADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVD 341

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 110/339 (32%), Positives = 165/339 (48%)

Query:     1 MDPKNGFCSETKIFHSLRPSIAFPP-ETTSVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
             +D K+GFC  T IF+S R  +A PP +   VTS++ S      P    T  +D  +  R+
Sbjct:    21 VDRKSGFCESTSIFYSKREPMALPPNQFLDVTSFIAS-----QPHRGKTVFVDAVTGRRL 75

Query:    60 LYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
              +P+L L +                +V  +LS NS+  P++ LS+ SLG +++  NP  T
Sbjct:    76 SFPELWLGVERVAGCLYALGVRKG-NVVIILSPNSILFPIVSLSVMSLGAIITTANPINT 134

Query:   120 IPEILRQIHLSKPVIAFATHDTAHKIP---QLKYGTVLLDSPEFEPLSATDSLDYY---- 172
               EI +QI  S+PV+AF T     K+          VL+D       S  D +       
Sbjct:   135 SDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQSYGDRVKLVGRLE 194

Query:   173 -----DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXX 227
                  +  E RV+  V+  D AA+LYSSGTTG  KG +L+ RNL                
Sbjct:   195 TMIETEPSESRVKQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIALVQAYRARFGLEQR 254

Query:   228 XXXXLCTVPYFHSYGFTCCLRSL-GMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVV 286
                 +CT+P  H +GF      L  +G ++V + KFD  ++L AVE  R S++ L PP+V
Sbjct:   255 T---ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIV 311

Query:   287 LKMARDGGTMDG-YDLSSIEVVASGGAHLTLSVIRKYLQ 324
             + M      ++  YDLSS+  V +GGA L+  V  K+++
Sbjct:   312 VAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVE 350

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.4e-35, P = 8.4e-35
 Identities = 102/337 (30%), Positives = 155/337 (45%)

Query:     1 MDPKNGFCSETKIFHSLRPSIAFPPETT-SVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
             ++ ++GFC+    F+S R  I  PP  +  VT+++ S  ++H       A ID ++   +
Sbjct:     4 VNSRSGFCNSNSTFYSKRTPIPLPPNPSLDVTTFISS--QAHR---GRIAFIDASTGQNL 58

Query:    60 LYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
              + +L  R                  V  LLS NS+  PV+ LS+ SLG +++  NP  T
Sbjct:    59 TFTELW-RAVESVADCLSEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNT 117

Query:   120 IPEILRQIHLSKPVIAFATHDTAHKIPQL--KYGTVLLDSPEFEPLSATDSLDYYDDDE- 176
               EI +QI  S PV+AF T     KI     K   VL+D    + +     L      E 
Sbjct:   118 SNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKEP 177

Query:   177 --ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCT 234
                RV+  V   D A +LYSSGTTGM KG + + RNL                    +CT
Sbjct:   178 SGNRVKERVDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQRFICT 237

Query:   235 VPYFHSYGFTCCLRSL-GMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG 293
             VP FH YG       L   G +++ + KF+   M+ A+ +++ + + L PP+++ M    
Sbjct:   238 VPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNGA 297

Query:   294 GTMDG-YDLSSIEVVASGGAHLTLSVIRKYLQLNRTV 329
               +   YDLSS+  V  GGA L+  V   + +   TV
Sbjct:   298 DQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTV 334

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 96/335 (28%), Positives = 159/335 (47%)

Query:     2 DPKNGFCSETKIFHSLRPSIAFP--PETTSVTSYVFSLLESHAPPPDTTALIDTASRHRI 59
             +P   F S+T I+ S  PS+  P  P   +V     S L SH    DT ALID+ +   I
Sbjct:    20 NPPFWFSSKTGIYTSKFPSLHLPVDPNLDAV-----SALFSHKHHGDT-ALIDSLTGFSI 73

Query:    60 LYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCT 119
              + +L + +                DV  L+  NSV  P+++LSL SLG +V+  NPS +
Sbjct:    74 SHTELQIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSS 133

Query:   120 IPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLL-DSPEFEPLSATDSLDYYDDDEER 178
             + EI +Q+      +AF + +   K+  L    + + +S +F+ +   ++  +Y   +E 
Sbjct:   134 LGEIKKQVSECSVGLAFTSTENVEKLSSLGVSVISVSESYDFDSIRI-ENPKFYSIMKES 192

Query:   179 V----RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXX----XXXX 230
                  +  +   D AAI+YSSGTTG  KG LLT RNL                       
Sbjct:   193 FGFVPKPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNV 252

Query:   231 XLCTVPYFHSYGFTCCLRSL-GMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKM 289
              L  +P  H YG +  +  L  +G ++V M +FD   ++  +E F+++H  + PP+++ +
Sbjct:   253 YLAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMAL 312

Query:   290 ARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
              +    + G    S++ V+SG A L+   I  +LQ
Sbjct:   313 TKKAKGVCGEVFKSLKQVSSGAAPLSRKFIEDFLQ 347

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 3.0e-29, P = 3.0e-29
 Identities = 95/323 (29%), Positives = 153/323 (47%)

Query:     4 KNGFCSETKIFHSLRPSIAFPPE-TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYP 62
             K+G+     I+ SLRP++  P +  TS+ S++F    S+   P   A+ D+ +   + + 
Sbjct:     3 KSGY-GRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSY---PSKLAIADSDTGDSLTFS 58

Query:    63 DLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPE 122
              L   +                DV  + + NS + P+ +L++ ++G V +  NP  T+ E
Sbjct:    59 QLKSAVARLAHGFHRLGIRKN-DVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNE 117

Query:   123 ILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLL---DSPEFEP------LSATDSLDYYD 173
             + +QI  S P I  + +    KI       VLL   D+ E  P      LS  + ++  +
Sbjct:   118 VSKQIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILSFDNVMELSE 177

Query:   174 DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRN-LXXXXXXXXXXXXXXXXXXXXL 232
                E   V +  SD AA+LYSSGTTG  KG  LT  N +                    L
Sbjct:   178 PVSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFL 237

Query:   233 CTVPYFHSYGFTCCLRS-LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR 291
             C +P FH +G      S L  G +LV M +F+   +LK +E+FRV+H+ + PPV L +++
Sbjct:   238 CFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSK 297

Query:   292 DGGTMDGYDLSSIEVVASGGAHL 314
                 +  +DLSS++ + SG A L
Sbjct:   298 QS-IVKKFDLSSLKYIGSGAAPL 319

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 5.4e-24, P = 5.4e-24
 Identities = 88/317 (27%), Positives = 141/317 (44%)

Query:    13 IFHSLRPSIAFPPETTSVTSYVFSLLESHAP-PPDTTALIDTASRHRILYPDLTLRIXXX 71
             IF S  P I F P    +T YVF            TT +ID A+   + Y D+   +   
Sbjct:    28 IFRSKLPDI-FIPNHLPLTDYVFQRFSGDGDGDSSTTCIIDGATGRILTYADVQTNMRRI 86

Query:    72 XXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSK 131
                          DV  LL  NS    + +L++  LG V +  NP  T PEI +Q   S 
Sbjct:    87 AAGIHRLGIRHG-DVVMLLLPNSPEFALSFLAVAYLGAVSTTANPFYTQPEIAKQAKASA 145

Query:   132 PVIAFATHDTAHKIPQLKYGTVLL----DSPEFEPLSATDS--LDYYD----DDEERVRV 181
               +         K+  LK   VL+    D  +   +S++D   + + +    D+ E ++ 
Sbjct:   146 AKMIITKKCLVDKLTNLKNDGVLIVCLDDDGDNGVVSSSDDGCVSFTELTQADETELLKP 205

Query:   182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXX---XXXXXXXXLCTVPYF 238
              +S  D  A+ YSSGTTG+ KG ++T + L                       LC +P F
Sbjct:   206 KISPEDTVAMPYSSGTTGLPKGVMITHKGLVTSIAQKVDGENPNLNFTANDVILCFLPMF 265

Query:   239 HSYGFTCCLRS-LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMD 297
             H Y     + S +  G +L+ + +F+   +++ ++ ++V+ V +APPVVL   +   T +
Sbjct:   266 HIYALDALMLSAMRTGAALLIVPRFELNLVMELIQRYKVTVVPVAPPVVLAFIKSPET-E 324

Query:   298 GYDLSSIEVVASGGAHL 314
              YDLSS+ ++ SG A L
Sbjct:   325 RYDLSSVRIMLSGAATL 341

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009699 "phenylpropanoid biosynthetic process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 87/310 (28%), Positives = 131/310 (42%)

Query:    12 KIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIXXX 71
             +IF S  P I  P      T Y F  L S +  P    LI  ++     Y +  L I   
Sbjct:    33 RIFRSKLPDIDIPNHLPLHT-YCFEKLSSVSDKP---CLIVGSTGKSYTYGETHL-ICRR 87

Query:    72 XXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSK 131
                          DV  +L QNS      ++    +G V +  NP  T  E+ +Q+  S 
Sbjct:    88 VASGLYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSG 147

Query:   132 PVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEE---RVRVSVSLSDP 188
               +         K+  L     L+ + E  P +         DDE    +  V +   D 
Sbjct:   148 AKLIITHSQYVDKLKNLGENLTLITTDEPTPENCLPFSTLITDDETNPFQETVDIGGDDA 207

Query:   189 AAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXX---XXXXXXXXLCTVPYFHSYGF-T 244
             AA+ +SSGTTG+ KG +LT ++L                       LC +P FH Y   +
Sbjct:   208 AALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIYSLNS 267

Query:   245 CCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSI 304
               L SL  G +++ M KF+ G +L  ++  RV+   L PP+V+ +A++  T++ YDLSS+
Sbjct:   268 VLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNP-TVNSYDLSSV 326

Query:   305 EVVASGGAHL 314
               V SG A L
Sbjct:   327 RFVLSGAAPL 336

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 85/316 (26%), Positives = 137/316 (43%)

Query:     8 CSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLR 67
             CS   IF S  P I + P    +  Y+F  +   A  P    LI+  +     Y D+ + 
Sbjct:    17 CSNDVIFRSRLPDI-YIPNHLPLHDYIFENISEFAAKP---CLINGPTGEVYTYADVHVT 72

Query:    68 IXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQI 127
                              DV  +L  NS  V + +L+   +G + +  NP  T  EI +Q 
Sbjct:    73 -SRKLAAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQA 131

Query:   128 HLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFE--PLSATDSLDYYDDDEERVRV---S 182
               S   +         KI  L+   VL+ + + +  P +     +    +E RV      
Sbjct:   132 KASAAKLIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLRFSELTQSEEPRVDSIPEK 191

Query:   183 VSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXX---XXXXXXXXLCTVPYFH 239
             +S  D  A+ +SSGTTG+ KG +LT + L                       LC +P FH
Sbjct:   192 ISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNRDDVILCVLPMFH 251

Query:   240 SYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG 298
              Y   +  L SL +G +++ M KF+   +L+ ++  +V+  ++ PP+VL +A+   T + 
Sbjct:   252 IYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPET-EK 310

Query:   299 YDLSSIEVVASGGAHL 314
             YDLSS+ +V SG A L
Sbjct:   311 YDLSSVRMVKSGAAPL 326

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-74
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	5e-47
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-45
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-42
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-41
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-37
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-29
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	4e-27
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-25
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-24
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-23
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	3e-22
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	7e-22
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	9e-22
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	6e-19
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-18
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	8e-18
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-17
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	7e-17
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-16
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-15
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	1e-14
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-14
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	3e-14
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-14
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	6e-14
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	9e-14
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	3e-13
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-13
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	3e-13
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	8e-13
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-12
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	3e-12
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-12
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	6e-12
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	7e-12
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	7e-12
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-11
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-11
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-11
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	4e-11
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	8e-11
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-10
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-10
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-10
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-10
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-10
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-10
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	6e-10
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	8e-10
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-09
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-09
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	4e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-09
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	5e-09
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	6e-09
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-08
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-08
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-08
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-08
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	2e-08
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-08
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	3e-08
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	3e-08
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	4e-08
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-08
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	6e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	8e-08
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	9e-08
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-07
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-07
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	3e-07
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	3e-07
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-07
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	6e-07
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-06
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-06
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-06
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-06
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	4e-06
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	4e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	5e-06
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	5e-06
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	8e-06
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-05
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-05
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-05
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-05
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-05
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-05
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-05
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	5e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	7e-05
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	7e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	8e-05
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	8e-05
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	9e-05
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	1e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-04
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-04
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-04
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-04
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	2e-04
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	3e-04
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-04
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	4e-04
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	4e-04
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	6e-04
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	7e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	9e-04
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	0.001
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	0.002
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	0.002
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	0.003
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	0.004

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  238 bits (610), Expect = 1e-74
 Identities = 108/304 (35%), Positives = 155/304 (50%), Gaps = 10/304 (3%)

Query: 24  PPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSK 83
            P+  S+ S             D  ALID A+   + Y +L   ++ LA  L       K
Sbjct: 1   IPKDLSLDSASLLFASEF---GDRPALIDAATGRALTYAELERLVRRLAAGL-AARGGRK 56

Query: 84  YDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH 143
            DV  LLS NS+  PV++L++ S G VV+  NP  T  EI +Q+  S   +A  T + A 
Sbjct: 57  GDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAE 116

Query: 144 KIPQLK-YGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVK 202
           K+  L     VLLDS +    +  D L    D+ E   V +   D AA+ YSSGTTG  K
Sbjct: 117 KLASLALEPVVLLDSADDGSAAIDDLLF--ADEPEPPVVVIKQDDVAALPYSSGTTGRSK 174

Query: 203 GALLTQRNLVAAVAGGHAVRA-ARSRPAVVLCTVPYFHSYGFT-CCLRSLGMGESLVCMG 260
           G +LT RNL+A VA   A       R  V LC +P FH YG T   L  L +G ++V M 
Sbjct: 175 GVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMP 234

Query: 261 KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIR 320
           +FD  + L A+E+++V+H+ + PP+VL + +    +D YDLSS++ + SG A L   +  
Sbjct: 235 RFDLEKFLAAIEKYKVTHLPVVPPIVLALVK-HPIVDKYDLSSLKQIGSGAAPLGKELAE 293

Query: 321 KYLQ 324
            +  
Sbjct: 294 AFRA 297

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  166 bits (423), Expect = 5e-47
 Identities = 101/332 (30%), Positives = 167/332 (50%), Gaps = 22/332 (6%)

Query: 7   FCSETKIFHSLRPSIAFPPETT-SVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLT 65
           +  ET I+ S  P +  P +      S++FS    H      TALID+++   I Y +L 
Sbjct: 18  YSPETGIYSSKHPPVPLPSDPNLDAVSFIFS----HHNHNGDTALIDSSTGFSISYSELQ 73

Query: 66  LRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILR 125
             +K++A  L     + + DV  LL  NSV  PV++L++ SLG +V+  NPS ++ EI +
Sbjct: 74  PLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKK 133

Query: 126 QIHLSKPVIAFATHDTAHKIPQLKYGTVLL-DSPEFEPLSATDSLDY---YDDDEERVRV 181
           ++      +AF + +   K+  L    + + ++ +F+         Y    +D +   + 
Sbjct: 134 RVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKP 193

Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVR------AARSRPAVVLCTV 235
            +   D AAI+YSSGTTG  KG +LT RNL+A V     VR             V L  +
Sbjct: 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVE--LFVRFEASQYEYPGSDNVYLAAL 251

Query: 236 PYFHSYG---FTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARD 292
           P FH YG   F   L SL  G ++V M +FD   M+K ++ F+V+H  + PP+++ + + 
Sbjct: 252 PMFHIYGLSLFVVGLLSL--GSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKK 309

Query: 293 GGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
              + G  L S++ V+ G A L+   I+ ++Q
Sbjct: 310 AKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQ 341

Length = 560

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  160 bits (407), Expect = 4e-45
 Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 17/283 (6%)

Query: 49  ALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLG 108
           ALID  +   + + DL  +   LA  L+ K  L + DV  L+S NS+  P ++L   + G
Sbjct: 1   ALIDADTGTELTFADLLKKALRLAKGLR-KLGLKQGDVVALISPNSIEFPPVFLGCLAAG 59

Query: 109 VVVSPCNPSCTIPEILRQIHLSKPVIAFATHDT------AHKIPQLKYGTVLLDSPEFEP 162
            +VS  NPS T  E+  Q+ +SKP + F   D       A K        ++LDS     
Sbjct: 60  GIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGV 119

Query: 163 LSATDSLDYYDDDEERVRVSVSL---SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH 219
           L   D L+     E+  R +  +    D AA+LYSSGTTG+ KG +L+ +N++A +    
Sbjct: 120 LRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANL--SQ 177

Query: 220 AVRA----ARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFR 275
                     S   VVL  +P++H+YG T  L SL  G +++ M KFD    LK +E+++
Sbjct: 178 VQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYK 237

Query: 276 VSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSV 318
           V+ + L PP+ + +A+    +D YDLSS+ V+ SG A L+  +
Sbjct: 238 VTSLFLVPPIAVALAKS-PLVDKYDLSSLRVIFSGAAPLSKEL 279

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  154 bits (390), Expect = 2e-42
 Identities = 76/318 (23%), Positives = 135/318 (42%), Gaps = 14/318 (4%)

Query: 18  RPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKT 77
              +       ++ S +      +   PD  ALI      R+ Y +L  R   LA +L+ 
Sbjct: 1   ANRLMRMTAELTLASLLERAARRN---PDRPALIFLGRGGRLTYRELDRRANRLAAALQ- 56

Query: 78  KYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFA 137
              +   D   +L  NS    + +L+    G V  P NP  T  E+   ++ +   +   
Sbjct: 57  ALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLIT 116

Query: 138 THDTAHKIPQLK------YGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAI 191
           + + A  +  +          +L+   +       ++L       +     V   D A +
Sbjct: 117 SAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFL 176

Query: 192 LYSSGTTGMVKGALLTQRNLVAAVAG-GHAVRAARSRPAVVLCTVPYFHSYGFTCCLRS- 249
           LY+SGTTG+ KG +LT RNL+A  AG   A+    +   VVL  +P FH +G    L + 
Sbjct: 177 LYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAP 236

Query: 250 LGMGESLVCMG--KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVV 307
           L  G +LV +    FD   +L  +E+++V+ +   P  + ++  +    D    SS+ +V
Sbjct: 237 LLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLV 296

Query: 308 ASGGAHLTLSVIRKYLQL 325
            SGGA L   ++ ++ + 
Sbjct: 297 LSGGAPLPPELLERFEER 314

Length = 534

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  152 bits (385), Expect = 1e-41
 Identities = 97/315 (30%), Positives = 140/315 (44%), Gaps = 16/315 (5%)

Query: 8   CSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLR 67
            SE  IF S  P I  P     +  Y F   E  +   D   LID A+     Y D+ L 
Sbjct: 4   ASEEFIFRSKLPDIYIP-NHLPLHDYCF---ERLSEFSDRPCLIDGATGRVYTYADVELL 59

Query: 68  IKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQI 127
            + +A  L  K  + + DV  LL  N     + +L     G V +  NP  T  EI +Q 
Sbjct: 60  SRRVAAGLH-KLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQA 118

Query: 128 HLSKPVIAFATHDTAHKIPQLKYGT----VLLDSPEFEPLSATDSLDYYDDDEERVRVSV 183
             S   +         K+  L        V +D P    L  ++      D+ E   V +
Sbjct: 119 KASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQ--ADENELPEVEI 176

Query: 184 SLSDPAAILYSSGTTGMVKGALLTQRNLVAAVA---GGHAVRAARSRPAVVLCTVPYFHS 240
           S  D  A+ YSSGTTG+ KG +LT + LV +VA    G           V+LC +P FH 
Sbjct: 177 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 236

Query: 241 YGFTCC-LRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGY 299
           Y      L  L +G +++ M KF+ G +L+ ++  +V+     PP+VL +A+    ++ Y
Sbjct: 237 YSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKS-PVVEKY 295

Query: 300 DLSSIEVVASGGAHL 314
           DLSSI +V SG A L
Sbjct: 296 DLSSIRMVLSGAAPL 310

Length = 537

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  138 bits (350), Expect = 2e-37
 Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 10/272 (3%)

Query: 61  YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           Y +L  R   LA +L+    +   D   +L  NS    V  L++   G    P +PS   
Sbjct: 2   YRELDERANRLAAALR-ALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDD-----D 175
             +   +  S+  +     +   K+ ++    ++L +               D+      
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120

Query: 176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTV 235
            E     V   D A I+Y+SGTTG  KG +LT RNL+A  A G A R   +    VL  +
Sbjct: 121 AEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAA-GLAERFGLTPGDRVLLLL 179

Query: 236 PYFHSYGFTCCLRSLGMGESLVCMGKFDF--GRMLKAVEEFRVSHVVLAPPVVLKMARDG 293
           P             L  G +LV + KF     R+L  +E+++V+ +   P  +L++    
Sbjct: 180 PLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPT-LLRLLLKA 238

Query: 294 GTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
                YDLSS+ +V SGG  L   ++R+  + 
Sbjct: 239 PEEKKYDLSSLRLVLSGGEPLPPELLRRLRER 270

Length = 412

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  117 bits (296), Expect = 2e-29
 Identities = 80/303 (26%), Positives = 119/303 (39%), Gaps = 49/303 (16%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           PD  AL       ++ Y +L       A  L+    + K D   L+  N  + P+ Y  +
Sbjct: 13  PDRPALTFFG--RKLTYAELDELSDRFAAYLQQL-GVKKGDRVALMLPNCPQFPIAYFGI 69

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLS 164
              G VV P NP  T  E+  Q++ S   +                    L S    PL 
Sbjct: 70  LKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFED----------ALASGAPLPL- 118

Query: 165 ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA-VRA 223
                           V +S  D A + Y+ GTTG+ KGA+LT RNLVA V    A V+ 
Sbjct: 119 ---------------PVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKD 163

Query: 224 ARSRPAVVLCTVPYFHSYGFTCC-LRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLA 282
            R      L  +P FH +G T   L  L +G + V +  F    +LK ++ +R +     
Sbjct: 164 LREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGV 223

Query: 283 PPV---VLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGA 339
           P +   +L           YD SS+ +  SGGA L + V  ++ +             GA
Sbjct: 224 PTLYNALLNHPEFK----KYDFSSLRLCISGGAPLPVEVAERFEEK-----------TGA 268

Query: 340 PII 342
           P++
Sbjct: 269 PLV 271

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  108 bits (273), Expect = 4e-27
 Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 2/127 (1%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTC 245
            DPA ILY+SGTTG  KG +LT RNL+A            S   V L   P +H+ G   
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVN-ALAGVDLSPGDVYLLAAPLYHAAGGLF 59

Query: 246 CLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIE 305
            L +L  G ++V M KFD   +L  +E  RV+H  L P +  ++ R       YDLSS+ 
Sbjct: 60  LLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPD-FARYDLSSLR 118

Query: 306 VVASGGA 312
           ++  G A
Sbjct: 119 LIIYGAA 125

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  106 bits (267), Expect = 1e-25
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 162 PLSATDSLDYY-DDDEERVRVSVS-LSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH 219
           P++    L++  +D   RV +  S L D A I Y+SGTTG+ KG + T R ++A  A   
Sbjct: 58  PMNREAELEHILNDSGARVLIVGSELDDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASA 117

Query: 220 AVRAARSRPAVVLCTVPYFHSYGFTCCLRS-LGMGESLVCMGKFDFGRMLKAVEEFRVSH 278
           A  +  +  +V+L  +P FH  G    + + +  G +LV + ++D     +A+E +RV+H
Sbjct: 118 AW-SGLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTH 176

Query: 279 VVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
                 +V+ +       D YDLSS++VV  GGA L  +V  +   L
Sbjct: 177 WTNIVTMVVDLLAHPRFAD-YDLSSLKVVGGGGAALPPAVAERLKAL 222

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  102 bits (256), Expect = 1e-24
 Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCC 246
           DPA I Y+SGTTG  KGA+LT RN++       A R   +     L  VP FH +G    
Sbjct: 3   DPALIQYTSGTTGRPKGAMLTHRNVLNNGY-SIARRLGLTEGDRTLVPVPLFHVFGLVLG 61

Query: 247 -LRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIE 305
            L SL  G +LV M KFD G  L+ +E  R++  +   P +     +    D +DLSS+ 
Sbjct: 62  VLASLTAGATLVLMEKFDPGAALRLIERERIT-ALHGVPTMFIALLEHPDFDKFDLSSLR 120

Query: 306 VVASGGAHLTLSVIRKY 322
              SGGA +   ++R+ 
Sbjct: 121 TGISGGAPVPPELVRRI 137

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  100 bits (251), Expect = 3e-23
 Identities = 79/323 (24%), Positives = 118/323 (36%), Gaps = 63/323 (19%)

Query: 37  LLESHAPP-PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYD-VAFLLSQNS 94
           +L   A   PD  A+     R    Y +L  R+  LA +L     + K D VA     NS
Sbjct: 11  ILRHGARKHPDKEAVYFDGRR--TTYAELDERVNRLANAL-RALGVKKGDRVAVFDW-NS 66

Query: 95  VRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAF-ATHDTAHKIPQLKYGTV 153
                 Y ++  +G V+ P N           I L    IA+                 V
Sbjct: 67  HEYLEAYFAVPKIGAVLHPIN-----------IRLKPEEIAYILNDAED---------RV 106

Query: 154 LLDSPEFEPL-----------------SATDSLD------YYDD-----DEERVRVSVSL 185
           +L   EF PL                     +         Y++      +      +  
Sbjct: 107 VLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFPDIDE 166

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTC 245
           +D AA+LY+SGTTG  KG +L+ RNL        A         V L  VP FH + +  
Sbjct: 167 NDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDD-VYLVIVPMFHVHAWGL 225

Query: 246 CLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPV---VLKMARDGGTMDGYDLS 302
              +L  G   V   +FD   +L  +E  RV+     P +   +LK  R        D S
Sbjct: 226 PYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA----YFVDFS 281

Query: 303 SIEVVASGGAHLTLSVIRKYLQL 325
           S+ +V  GGA L  +++R++ + 
Sbjct: 282 SLRLVIYGGAALPPALLREFKEK 304

Length = 521

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 97.4 bits (242), Expect = 3e-22
 Identities = 81/308 (26%), Positives = 144/308 (46%), Gaps = 20/308 (6%)

Query: 10  ETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIK 69
              IF S  PS+  P + T +  +V    E +A   D  A ++  +   + Y ++    +
Sbjct: 11  NEHIFRSRYPSVPVPDKLT-LPDFVLQDAELYA---DKVAFVEAVTGKAVTYGEVVRDTR 66

Query: 70  TLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHL 129
             A +L++   L K  V  ++  N     ++ L + + G V S  NP+    EI +Q   
Sbjct: 67  RFAKALRS-LGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEA 125

Query: 130 S--KPVIAFATHDTAHKIPQLKYGTVLLDSPEFE-PLSATDSLDYYDD-DEERVRVSVSL 185
           +  K ++   T+    K+  L    ++L   + E  ++  + L+  D   +      +  
Sbjct: 126 AGAKLIVTNDTN--YGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQ 183

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGG-HAVRAARSRPAVVLCTVPYFHSYGFT 244
           +D  A+ +SSGTTG+ KG +LT RNLVA +     +V        V L  +P+FH YG T
Sbjct: 184 TDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGIT 243

Query: 245 --CC--LRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
             CC  LR+ G    +V M +F+    L A+    VS   + PP++L + ++   ++ +D
Sbjct: 244 GICCATLRNKG---KVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKN-PIVEEFD 299

Query: 301 LSSIEVVA 308
           LS +++ A
Sbjct: 300 LSKLKLQA 307

Length = 546

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 94.3 bits (235), Expect = 7e-22
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCC 246
           DPA ILY+SGTTG  KG +L+ RNL+A      A     +   V+L  +P FH  G    
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQ-ALAQAIGLTEGDVLLSVLPLFHVVGGGSG 59

Query: 247 L-RSLGMGESLVCMGKFDF-GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSI 304
           L  +L  G ++V    F F    L+ +E++RV+ +   P  +           GYDLSS+
Sbjct: 60  LLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPT-LYDALAKAAEDRGYDLSSL 118

Query: 305 EVVASGGAHLTLSVIRKYLQLNR 327
            ++ SGG  L+  ++ ++ +   
Sbjct: 119 RLLISGGEPLSPELLERFEERPG 141

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 95.8 bits (239), Expect = 9e-22
 Identities = 70/349 (20%), Positives = 120/349 (34%), Gaps = 51/349 (14%)

Query: 23  FPPETTSVTSYVFSLLESH--APPPDTTALI---DTASRHRILYPDLTLRIKTLAYSLKT 77
           F   T ++     + L+ H  A  PD TA+I   +      + Y DL   +  LA +LK 
Sbjct: 3   FEGGTLNLA---LNALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALK- 58

Query: 78  KYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFA 137
                K D   +   NS    +  L+   +G + +  +P  +   +  +I    P +  A
Sbjct: 59  DLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIA 118

Query: 138 THDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYD----DDEERVRVSVSLSDPAAILY 193
              T     ++              +     L Y +      E+     +   DP  +LY
Sbjct: 119 DDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLY 178

Query: 194 SSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA--------VVLCTVP----YFHSY 241
           +SGTTG  KG + +         GG+ V    +               +      Y   Y
Sbjct: 179 TSGTTGKPKGIVHS--------HGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWY 230

Query: 242 GFTCCLRSLGMGESLV-CMGKFDF--GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG 298
                   L  G + V   G+  +   R+ +A+E+++V+      P  L+     G  + 
Sbjct: 231 SV---FSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFG-TSPTFLRRLMKLGLGEP 286

Query: 299 YDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPIISLSKQ 347
           YDLSS+ V+ S G  L       +               G  I+ +  Q
Sbjct: 287 YDLSSLRVLGSAGEPLNPEAFEWFYS-----------ALGVWILDIYGQ 324

Length = 528

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 87.3 bits (217), Expect = 6e-19
 Identities = 67/293 (22%), Positives = 112/293 (38%), Gaps = 27/293 (9%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
            D  A +      R+ Y +L  R++  A +L     + K D   + + NS    +  L  
Sbjct: 19  GDKEAYVFG--DQRLTYAELNARVRRAAAALA-ALGIGKGDRVAIWAPNSPHWVIAALGA 75

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHD-------TAHKIPQLKYGTVLLDS 157
              G VV P N   T  E    +        F              ++P L++  +    
Sbjct: 76  LKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETE 135

Query: 158 PEFEPLSATDSLDYYD---DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNL--- 211
            +        +   +    D  ER    V   D A IL++SGTTG  KGA+LT R L   
Sbjct: 136 EDDPHTEKMKTFTDFLAAGDPAERAP-EVDPDDVADILFTSGTTGRPKGAMLTHRQLLSN 194

Query: 212 VAAVAGGHAVRAA-RSRPAVVLCTVPYFHSYGFT-CCLRSLGMGESLVCMGKFDFGRMLK 269
            A  A    +    R      L   P+FH +G+       L  G +++ +  FD   + +
Sbjct: 195 AADWAEYLGLTEGDR-----YLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFR 249

Query: 270 AVEEFRVSHVVLA-PPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
            +E  R++  VL  PP +             DLSS+ +  +G A + ++++ +
Sbjct: 250 LIETERIT--VLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLER 300

Length = 513

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 3/142 (2%)

Query: 183 VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA-VRAARSRPAVVLCTVPYFHSY 241
            +  D A ILY+SGTTG  KGA LT RNL A  A G A V      P  VL  +P FH+Y
Sbjct: 216 PTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAY 275

Query: 242 GFTCCLR-SLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
           G T CL  ++ +G  LV +   D   +L A+++   + +   PP+  K+A +     G D
Sbjct: 276 GLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIA-EAAEERGVD 334

Query: 301 LSSIEVVASGGAHLTLSVIRKY 322
           LS +    SG   L +S +  +
Sbjct: 335 LSGVRNAFSGAMALPVSTVELW 356

Length = 573

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 86.1 bits (214), Expect = 1e-18
 Identities = 62/279 (22%), Positives = 101/279 (36%), Gaps = 37/279 (13%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           PD TA++D     R+ Y +L   +  LA  L     +   D   +   N     +LY +L
Sbjct: 29  PDRTAVVDGP--RRLTYRELDAAVDRLAAGLLAL-GIGPGDRVLVQLPNVAEFVILYFAL 85

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLS 164
           F LG +     P+          H +  +  FA    A            +         
Sbjct: 86  FKLGAIPVLALPA----------HRAHEIGHFARQSEA---------KAYI--------- 117

Query: 165 ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAA 224
             D    +D       +   L D A    S GTTG+ K    T  + + +     +  A 
Sbjct: 118 IADRFSGFDYAALARELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARA--SAEAC 175

Query: 225 RSRP-AVVLCTVPYFHSYGFTCC--LRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVL 281
              P  V L  +P  H++  +    L +L  G ++V             +E  +V+H  L
Sbjct: 176 GLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTAL 235

Query: 282 APPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIR 320
            P ++  +  +    D  DLSS+ V+  GGA L+  + R
Sbjct: 236 VPALLN-LWLEAAEWDQADLSSLRVIQVGGAPLSPELAR 273

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 84.2 bits (209), Expect = 8e-18
 Identities = 75/312 (24%), Positives = 127/312 (40%), Gaps = 38/312 (12%)

Query: 45  PDTTALI--DTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYL 102
           PD TA++    A    I Y +L    + LA  L+ +  + K D   L  QNS +  + Y 
Sbjct: 24  PDKTAIVFYGRA----ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY 79

Query: 103 SLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGT---------- 152
           ++     VV P NP     E+   +  S   +A    + A K+                 
Sbjct: 80  AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQY 139

Query: 153 --------------VLLDSPEFEPLSATDSLDYYDDDEERVR---VSVSLSDPAAILYSS 195
                          L   P  + L+    + + +     +     +    D A + Y+S
Sbjct: 140 SDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTS 199

Query: 196 GTTGMVKGALLTQRNLVAAVAGGHAVRAARSRP-AVVLCTVPYFHSYGFTCCLRS-LGMG 253
           GTTG+ KG + T R ++A   G   V  + S P +VVL  +P FH  G    + + +  G
Sbjct: 200 GTTGVPKGCMHTHRTVMANAVGS--VLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAG 257

Query: 254 ESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAH 313
            ++V M ++D     + +E +RV+H    P +V+      G +   DLSS+  +  GGA 
Sbjct: 258 ATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG-LAERDLSSLRYIGGGGAA 316

Query: 314 LTLSVIRKYLQL 325
           +  +V  +  +L
Sbjct: 317 MPEAVAERLKEL 328

Length = 546

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 67/284 (23%), Positives = 125/284 (44%), Gaps = 17/284 (5%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           PD  A+I       + Y  L   +  +A  L  +  + K +   +LSQNS+   VL  ++
Sbjct: 16  PDRIAII--TEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAI 73

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLS 164
             +  +  P N   T  E++ Q+  S   + F      +    ++  + +      + + 
Sbjct: 74  AKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYV------QRVI 127

Query: 165 ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLV-AAVAGGHAVRA 223
           +  SL   +D +    V  + S    I Y+SGTTG  KGA+LTQ N+   A+    A+  
Sbjct: 128 SITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDL 187

Query: 224 ARSRPAVVLCTVPYFHSYG---FTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVV 280
                ++VL  +P FH  G   F     +L  G  ++   KF+  + L  +E+ +V+ VV
Sbjct: 188 TMHDRSIVL--LPLFHIGGIGLFA--FPTLFAGGVIIVPRKFEPTKALSMIEKHKVT-VV 242

Query: 281 LAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
           +  P + +   +    +  +L S+    +GGA     ++R+++ 
Sbjct: 243 MGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFID 286

Length = 496

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 81.2 bits (200), Expect = 7e-17
 Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 9/157 (5%)

Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVA----GGHAVRAARSRPAVVLCTVPY 237
           +V+  D A + Y+ GTTG+ KGA+LT  NL +AV+     G   RA R     V+C +P 
Sbjct: 188 AVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPL 247

Query: 238 FHSYGFTCC-LRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM 296
           FH Y  T   LRSL  G+ +    +FD   + + +EE R +     P + + +A D  ++
Sbjct: 248 FHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALAND-PSL 306

Query: 297 DGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQL 333
           +  DLSS+  + SGGA L + V   +    R    +L
Sbjct: 307 EKRDLSSLATIGSGGAPLPVEVANFF---ERKTGLKL 340

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 73/292 (25%), Positives = 115/292 (39%), Gaps = 24/292 (8%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           PD TA++    R    Y +   R + LA +L  K  + K DV  +L+ N    P +  + 
Sbjct: 18  PDRTAVVYGDRR--YTYRETYDRCRRLASALS-KLGIGKGDVVAVLAPN---TPAMLEAH 71

Query: 105 F---SLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ------LKYGTVLL 155
           F     G V+ P N      +I   ++ S+  + F   +      +       K      
Sbjct: 72  FGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTE 131

Query: 156 DSPEFEPLSATDSLDYYD-----DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRN 210
                     ++  DY D     D +          DP ++ Y+SGTTG  KG + T R 
Sbjct: 132 IIVISPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRG 191

Query: 211 -LVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLK 269
             + A+           RP V L T+P FH  G+        +G + VC+ K D   +  
Sbjct: 192 AYLNALGNVIEWG-MPDRP-VYLWTLPMFHCNGWCFPWAITAVGGTHVCLRKVDAPAIYD 249

Query: 270 AVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
            +E+ +V+H+  A P VL M  +    D   L     V + GA    +VI+K
Sbjct: 250 LIEKHKVTHLCGA-PTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKK 300

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 59/274 (21%), Positives = 107/274 (39%), Gaps = 34/274 (12%)

Query: 61  YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           + DL      LA +LK    +       L+ QNS+ + +L  +   LG  ++  N   T 
Sbjct: 2   WQDLDCEAAHLAKALKA-QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVR 180
            E   Q+      +                   LL+  +F+  S  D ++     E  + 
Sbjct: 61  NERTNQLEDLDVQLLLTDS--------------LLEEKDFQADSL-DRIEAAGRYETSLS 105

Query: 181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVV----LCTVP 236
            S ++   A ++++SGTTG  K    T RN  A      AV +  +         L ++P
Sbjct: 106 ASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYA-----SAVGSKENLGFTEDDNWLLSLP 160

Query: 237 YFHSYGFTCCLRSLGMGESLVCMGKF-DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT 295
            +H  G +   R L  G +L  + KF     M+      RV+H+ L P  + ++  +GG 
Sbjct: 161 LYHISGLSILFRWLIEGATLRIVDKFNQLLEMIA---NERVTHISLVPTQLNRLLDEGGH 217

Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV 329
            +     ++  +  GG+ +   +I +  Q    +
Sbjct: 218 NE-----NLRKILLGGSAIPAPLIEEAQQYGLPI 246

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 64/270 (23%)

Query: 61  YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           + +L  R+  LA  L     + + D   LL++NS+   +L+L+L  LG VV P NP    
Sbjct: 4   FQELDQRVSQLAEQLAAL-GVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLPQ 62

Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVR 180
            E+ +Q+   +P                                                
Sbjct: 63  EELQQQLADLQPD----------------------------------------------- 75

Query: 181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS---RPAVV-LCTVP 236
               L  PA I+++SG+TG  K  + T  N +A+  G     +A +    P    L ++P
Sbjct: 76  ----LDRPATIIFTSGSTGKPKAVVHTWGNHLASARG-----SAENLGLTPDDNWLLSLP 126

Query: 237 YFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM 296
            FH  G    +RSL  G +LV   KFD   + +A+E   V+H+ L P  + ++    G  
Sbjct: 127 LFHVSGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGAR 186

Query: 297 DGYDLSSIEVVASGGAHLTLSVIRKYLQLN 326
               LSS+  V  GGA +  S++ +  Q  
Sbjct: 187 ---WLSSLRAVLLGGAPIPPSLLEQARQRG 213

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 8/167 (4%)

Query: 163 LSATDSLDYYDDDEERVRVSVSL-----SDPAAILYSSGTTGMVKGALLTQRNLVA-AVA 216
           +S ++++  ++  E+ V   V +     +D A + Y+ GTTG  KG +LT +NLV+  + 
Sbjct: 178 VSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLM 237

Query: 217 GGHAVRAARSRPAVVLCTVPYFHSYGFTCCLR-SLGMGESLVCMGKFDFGRMLKAVEEFR 275
           G   +   +    VVL  +P+FH YG T  +  S+  G  +V + KFD   + +A+++ +
Sbjct: 238 GVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHK 297

Query: 276 VSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKY 322
           V+    AP + + +  +   +  YD+SSI    SG A L + V  K+
Sbjct: 298 VTLFPGAPTIYIALL-NSPLLKEYDISSIRACISGSAPLPVEVQEKF 343

Length = 563

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 53/252 (21%), Positives = 89/252 (35%), Gaps = 22/252 (8%)

Query: 61  YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           Y +L  R++ LA  L     +   D   + + N     +  L++ +LG V  P   + T 
Sbjct: 48  YRELYERVRALASGLL-SLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTP 106

Query: 121 PEILRQIHLSKPVIAFA-THDTAHKIPQLKYGTVLLDSPEFE-------------PLSAT 166
            ++   ++ S+  + F    +    +  +      +                    L   
Sbjct: 107 EQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVF 166

Query: 167 DSLDYYDDDEERVRVS-----VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV 221
                     +   +          D A I+Y+SGTTG  KG +LT RNL+A VAG   V
Sbjct: 167 PDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEV 226

Query: 222 RAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVL 281
                    VL  +P  H +           G   V   K D   +L+ ++E R   V++
Sbjct: 227 LPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF-KEDPRTLLEDLKEVRP-TVMI 284

Query: 282 APPVVLKMARDG 293
             P V +    G
Sbjct: 285 GVPRVWEKVYKG 296

Length = 613

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 34/293 (11%)

Query: 55  SRHRILYPDLTLRIKTLAYSLKTKYKLSKYD-VAFLLSQNSVRVPVLYLSLFSLGVVVSP 113
           S HR  Y D   R++ LA +L+    +   D VA L   N+ R   LY ++  +G V+  
Sbjct: 22  SIHRYTYADFYRRVRRLANALE-SLGVKPGDRVATLA-WNTHRHLELYFAVPGMGAVLHT 79

Query: 114 CNPSCTIPEILRQIHLSK-----------PVIAFATHDTAHKIPQLKYGTVLLDSPEFEP 162
            NP  +  +I   I+ ++           P++       A ++P +K   V+ D  +   
Sbjct: 80  LNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEA----IAPRLPTVKAV-VVYDDADMPE 134

Query: 163 LSATDSLDYYD--DDEERVRVSVSLS--DPAAILYSSGTTGMVKGALLTQRNLVA-AVAG 217
            S  +   Y +  ++E        L     A + Y+SGTTG  KG + + R+LV   +A 
Sbjct: 135 TSLPNVYAYEELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLAS 194

Query: 218 GHAVRAARSRPAVVLCTVPYFH--SYG--FTCCLRSLGMGESLVCMGKFDFGRML-KAVE 272
                   S    VL  VP FH  ++G  +   +  +G    LV  G++     L   +E
Sbjct: 195 ALPDSLGLSESDTVLPVVPMFHVNAWGLPYAATM--VGA--KLVLPGRYLDPASLLDLIE 250

Query: 273 EFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
           E +V+ V    P +     +    +G DLSS+  V  GG+ L  S+I K  + 
Sbjct: 251 EEKVT-VSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEER 302

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 191 ILYSSGTTGMVKGALLTQRNLVA--AVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLR 248
           ++ +SGTTG  KGA    R   +  A   G   R         L   P FH+ G+     
Sbjct: 212 VILTSGTTGTPKGA---PRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTL 268

Query: 249 SLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG-YDLSSIEVV 307
           ++ +G ++V   +FD    L+ + + + + +V+ P ++ ++   G  +   YD SS++++
Sbjct: 269 AMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKII 328

Query: 308 ASGGAHLT 315
              G+ L+
Sbjct: 329 FVSGSALS 336

Length = 549

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 71.1 bits (175), Expect = 9e-14
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 15/159 (9%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFT 244
            DPA IL++SGTTG  KG  LT +NL+A+    +  ++ +  P+   L  +P FH +G  
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASAR--NIAKSHKLTPSDRCLNVMPLFHIHGLI 59

Query: 245 CC-LRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS 303
              L +L  G S+VC  KF   +    + ++RV+     P +   + +      G     
Sbjct: 60  VSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPPR 119

Query: 304 IEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPII 342
           +  + S  A L  +V+ +   L +         FG P++
Sbjct: 120 LRFIRSASAPLPPAVLDR---LEKR--------FGVPVL 147

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 69.9 bits (172), Expect = 3e-13
 Identities = 66/248 (26%), Positives = 94/248 (37%), Gaps = 53/248 (21%)

Query: 86  VAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKI 145
           VAF L  N     V+YL+   +G V    NP   I  I R              +    +
Sbjct: 29  VAFQLP-NWWEFVVVYLACARIGAV---INP---IVPIYR------------ERELGFIL 69

Query: 146 PQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAA-ILYSSGTTGMVKGA 204
            Q +   VL    EF         DY            ++ D  A +LY+SGTTG  KG 
Sbjct: 70  RQAR-ARVLFVPDEF------RGFDY-----------AAMPDDVALLLYTSGTTGEPKGV 111

Query: 205 LLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFH----SYGFTCCLRSLGMGESLVCMG 260
           + T   L+A V   +  R   +   VVL   P  H     YG    L     G ++V   
Sbjct: 112 MHTHNTLLAEVR-SYVERLGLTPDDVVLMPSPLAHITGFLYGLELPLLL---GATVVLQD 167

Query: 261 KFDFGRMLKAVEEFRVSHVVLAPPVV---LKMARDGGTMDGYDLSSIEVVASGGAHLTLS 317
           ++D  R L+ + E  V+  + A P +   L  A       G DL S+ V   GGA +   
Sbjct: 168 RWDPARALELIREHGVTFTMGATPFLADLLAAADAA----GPDLPSLRVFLCGGAPVPRE 223

Query: 318 VIRKYLQL 325
           + R+  + 
Sbjct: 224 LARRAAEA 231

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 82/299 (27%), Positives = 131/299 (43%), Gaps = 24/299 (8%)

Query: 34  VFSLLE-SHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQ 92
           VF +L  +    PD  AL+D A   R+ Y +L  R++ +A  L  +    +  VA +++ 
Sbjct: 3   VFEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVA-VVAP 61

Query: 93  NSVRVPVLYLSLFSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK 149
           NSV   +  L+L  LG V +  NP      I E++++  ++  VIA              
Sbjct: 62  NSVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGS 121

Query: 150 YGTVLLDSPEF---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALL 206
              VL         EP SA   ++    + E          PA + Y+SGTTG+ KGA++
Sbjct: 122 GVRVLALGDLVGLGEPESAGPPIEDPPREPE---------QPAFVFYTSGTTGLPKGAVI 172

Query: 207 TQRNL---VAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKF 262
            QR     V  ++    +R  R    VVL  +P +H  GF   L  +L +  + V + +F
Sbjct: 173 PQRAAESRVLFMSTQAGLRHGRHN--VVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEF 230

Query: 263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
           D    LK +E+ RV+  + A P  L             L S+E V   GA +  +V+ +
Sbjct: 231 DPADALKLIEQERVT-SLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATMPDAVLER 288

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS-------RPA-VVLCTVPY 237
            D AAI+Y+SG+TG  KG +L+ RNL A          ARS            +L  +P+
Sbjct: 2   DDLAAIIYTSGSTGEPKGVMLSHRNLTA---------GARSIAQYLELTEDDRILAVLPF 52

Query: 238 FHSYGFTCCLRSLGMGESLVCMGKFDFGR-MLKAVEEFRVSHVVLAPPVVLKMARDGGTM 296
              YG +  L +  +G +LV   +F F R +LK + + R++     P    ++ R     
Sbjct: 53  SFDYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLA 112

Query: 297 DGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
              D  S+  + + G  L    I +  + 
Sbjct: 113 R-EDFPSLRYLTNAGGALPAKTILQLRRA 140

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 68.7 bits (168), Expect = 8e-13
 Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 20/282 (7%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           P   A +D A   R  Y +L   +  LA  L+ +      +   +L++NSV +  L+ + 
Sbjct: 9   PQRLAAVDLALGRRWTYAELDALVGRLAAVLR-RRGCVDGERLAVLARNSVWLVALHFAC 67

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLS 164
             +G +  P N   +  E+   +  ++P +       A     ++     + S +    +
Sbjct: 68  ARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASADALEPA 127

Query: 165 ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAA 224
            T S+          RVS+       IL++SGT+G  KG +L++RNL    A    V   
Sbjct: 128 DTPSIP-------PERVSL-------ILFTSGTSGQPKGVMLSERNLQQT-AHNFGVLGR 172

Query: 225 RSRPAVVLCTVPYFHSYGFTCCLRS-LGMGESLVCMGKFDFGRMLK--AVEEFRVSHVVL 281
               +  LC  P FH  G    +R  L +G S++    F+  R L         ++H   
Sbjct: 173 VDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFC 232

Query: 282 APPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYL 323
            P  + +  R     D   L  +  + +GGA      I  +L
Sbjct: 233 VPQ-MAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWL 273

Length = 488

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 71/260 (27%), Positives = 103/260 (39%), Gaps = 23/260 (8%)

Query: 38  LESHA-PPPDTTALIDTASRHR---ILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQN 93
           L  HA   PD  AL     R       + +L  R+  LA +L ++  +   D   +L  N
Sbjct: 23  LARHALMQPDAPAL-----RFLGNTTTWRELDDRVAALAGAL-SRRGVGFGDRVLILMLN 76

Query: 94  SVRVPVLYLSLFSLGVVVSPCNPSCTIPEIL-------RQIHLSKPVIAFATHDTAHKIP 146
                   L+   LG +  P N   T PEI          + +++  +A         +P
Sbjct: 77  RTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVP 136

Query: 147 QLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALL 206
            L    V   S +   L   D L   +       V +    PA I+Y+SGTTG  KGA+L
Sbjct: 137 LLSTVVVAGGSSDDSVLGYEDLLA--EAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVL 194

Query: 207 TQRNLVA-AVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVC--MGKFD 263
           T  NL   A+       A  +   V    VP FH  G    L  L +G   V   +G FD
Sbjct: 195 THANLTGQAMTCLRTNGADINS-DVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFD 253

Query: 264 FGRMLKAVEEFRVSHVVLAP 283
            G++L  +E  +V+ + L P
Sbjct: 254 PGQLLDVLEAEKVTGIFLVP 273

Length = 542

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 68/291 (23%), Positives = 107/291 (36%), Gaps = 39/291 (13%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           PD  A+I  ++   + Y +L  R   LA+  +    L + D   +  +N++R   +  + 
Sbjct: 11  PDKPAVIMASTGEVVTYRELDERSNRLAHLFR-SLGLKRGDHVAIFMENNLRYLEVCWAA 69

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEP-- 162
              G+  +  N   T  E    +  S       +         L     L   P      
Sbjct: 70  ERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARAL-----LKQCPGVRHRL 124

Query: 163 -LSATDSLDYYDDDEERVRVSVSLSDP--------AAILYSSGTTGMVKGAL-------- 205
            L     L+ +    E V     L             +LYSSGTTG  KG          
Sbjct: 125 VLDGDGELEGFVGYAEAVA---GLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPP 181

Query: 206 LTQRNLVAAVAGGHAVRAARSRPAVV-LCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDF 264
            T   L A +      R    R  +V L   P +HS      +  + +G +++ M  FD 
Sbjct: 182 DTPLPLTAFLQ-----RLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDA 236

Query: 265 GRMLKAVEEFRVSHVVLAPPV---VLKMARDGGTMDGYDLSSIEVVASGGA 312
            + L  +EE+ V+H  L P +   +LK+  +    D YDLSS+EV     A
Sbjct: 237 EQYLALIEEYGVTHTQLVPTMFSRMLKLPEE--VRDKYDLSSLEVAIHAAA 285

Length = 511

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 189 AAILYSSGTTGMVKGALLTQRNL-VAAVAGGHAVRAARSRP----AVVLCTVPYFHSYGF 243
           A +LYSSGTTG  KG       L      G               +V L   P +H+   
Sbjct: 143 ADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPL 202

Query: 244 TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPV---VLKMARDGGTMDGYD 300
              + +L +G ++V M KFD    L  +E +RV+H  L P +   +LK+  +      YD
Sbjct: 203 RFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEE--VRARYD 260

Query: 301 LSSIEVVASGGA 312
           +SS+ V     A
Sbjct: 261 VSSLRVAIHAAA 272

Length = 502

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 154 LLDSPEFEPLSATDSLDYYDDDEERVR-VSVSLSDPAAILYSSGTTGMVKGALLTQRNLV 212
            L +P      A D L         V     +L   AA+ Y+ GTTGM KG   TQR++V
Sbjct: 176 SLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMV 235

Query: 213 AAVAGGHAVRAARSRPAVVLCTVPYFHSYG-FTCCLRSLGMGESLVCMGKFDFGRMLKAV 271
              A  +AV       +V L  +P F   G     L  L  G +LV + ++D    + AV
Sbjct: 236 YTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAV 295

Query: 272 EEFRVSHVVL 281
           E +RV+  V+
Sbjct: 296 ERYRVTRTVM 305

Length = 567

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 17/135 (12%)

Query: 188 PAAILYSSGTTGMVKGALLTQRNL----VAAVAGGHAVRA-ARSRPAVVLCTVPYFHS-- 240
           P +++Y+SGTTG  KG    +R       AA A                L T P +HS  
Sbjct: 154 PQSMIYTSGTTGHPKG---VRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAP 210

Query: 241 --YGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLK-MARDGGTMD 297
             YG    LR+  +G  LV   +FD   +L+ +E  R++H+ + P + ++ +        
Sbjct: 211 NAYG----LRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRA 266

Query: 298 GYDLSSIEVVASGGA 312
            YD+SS+  V    A
Sbjct: 267 KYDVSSLRHVIHAAA 281

Length = 509

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 34/214 (15%)

Query: 143 HKIPQLKYGTVLLDSPEFEPLSATDSLDYYD----DDEERVRVSVSLSDPAAILYSSGTT 198
            ++P+L+   V+ D    + L    ++DY D       ER     S  D   +LY+ GTT
Sbjct: 119 PRLPKLRTLVVVEDGSGNDLLP--GAVDYEDALAAGSPERDFGERS-PDDLYLLYTGGTT 175

Query: 199 GMVKGALLTQRNLVAAVAGG--------------HAVRAARSRPAVVLCTVPYFHSYGFT 244
           GM KG +  Q ++   + GG               A RAA           P  H  G  
Sbjct: 176 GMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW 235

Query: 245 CCLRSLGMGESLVC--MGKFDFGRMLKAVEEFRVSHVVL-----APPVVLKMARDGGTMD 297
               +L  G+++V     +FD   + + +E  +V+ + +     A P++  +   G    
Sbjct: 236 AAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGP--- 292

Query: 298 GYDLSSIEVVASGGAHLTLSVIRKYLQL--NRTV 329
            YDLSS+  +ASGGA  + SV    L+L  N  +
Sbjct: 293 -YDLSSLFAIASGGALFSPSVKEALLELLPNVVL 325

Length = 533

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 64.9 bits (159), Expect = 2e-11
 Identities = 72/247 (29%), Positives = 101/247 (40%), Gaps = 25/247 (10%)

Query: 35  FSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNS 94
           F  L +     D    I+T    R  Y DL      LA  L     +   D   +  + S
Sbjct: 6   FDALRAAFADRDAPF-IETPDGLRYTYGDLDAASARLANLL-VALGVKPGDRVAVQVEKS 63

Query: 95  VRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKP---VIAFATHDTAHKIPQLKYG 151
                LYL+    G V  P N + T+ E+   I  ++P   V   A      KI     G
Sbjct: 64  PEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAA-AAG 122

Query: 152 TVLLDSPEFEPL------SATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGAL 205
                 P  E L      S  ++     DD E V       D AAILY+SGTTG  KGA+
Sbjct: 123 A-----PHVETLDADGTGSLLEAAAAAPDDFETVPRGA--DDLAAILYTSGTTGRSKGAM 175

Query: 206 LTQRNLVA-AVAGGHAVRAARSRPA-VVLCTVPYFHSYG-FTCCLRSLGMGESLVCMGKF 262
           L+  NL++ A+     V   R  P  V++  +P FH++G F     +L  G S++ + KF
Sbjct: 176 LSHGNLLSNALT---LVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKF 232

Query: 263 DFGRMLK 269
           D   +L 
Sbjct: 233 DPDAVLA 239

Length = 504

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 56/281 (19%), Positives = 92/281 (32%), Gaps = 64/281 (22%)

Query: 57  HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNP 116
             I + +L  R++ LA  L     +   D   +L++N     +  L++ + G V  P  P
Sbjct: 4   QTITWAELAERVRRLAAGLI-ALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYP 62

Query: 117 SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDE 176
           + +  E+   ++ S   + F                   D P+                 
Sbjct: 63  TSSPEEVAYILNDSGARVVFVE-----------------DKPD----------------- 88

Query: 177 ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVP 236
                     D A ++Y+SGTTG  KG +LT RNL+A  A         S    VL  +P
Sbjct: 89  ----------DLATLIYTSGTTGNPKGVMLTHRNLLAQAAAL-LEVIPLSPGDRVLSFLP 137

Query: 237 YFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPP--------VVL 287
             H +         L  G  +          +L+ + E R   V  A P         + 
Sbjct: 138 LAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLREVRP-TVFFAVPRVWEKIYAGIE 194

Query: 288 KMARDGGTMDG--YD----LSSIEVVASGGAHLTLSVIRKY 322
                 G +    +        +    SGGA L   V+  +
Sbjct: 195 AKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFF 235

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 55/170 (32%), Positives = 76/170 (44%), Gaps = 11/170 (6%)

Query: 148 LKYGTVLLDSPEFEPLSATDSLDY-YDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALL 206
            K G V +       L   D++++   D   RV V+    DPA ++Y+SGTTG  KGAL 
Sbjct: 52  YKLGAVSVPLS---VLFGPDAVEHRLRDSGARVLVTDGSDDPAILIYTSGTTGPPKGALH 108

Query: 207 TQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYG--FTCCLRSLGMGESLVC--MGKF 262
             R L+  + G         RP  V  T   +   G      L +L  G  +V   M +F
Sbjct: 109 GHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRF 168

Query: 263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG-YDLSSIEVVASGG 311
           D  R    +  + V++  L PP  LKM R  G+    YDL  +  VASGG
Sbjct: 169 DPERAFALMRRYGVTNAFL-PPTALKMMRRVGSERARYDL-RLRAVASGG 216

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 23/246 (9%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           PD TA+       ++ + +L   + ++A  L     + K D   LL +N + + ++  +L
Sbjct: 16  PDRTAIEF--EEKKVTFMELHEAVVSVAGKL-AALGVKKGDRVALLMKNGMEMILVIHAL 72

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLS 164
             LG V    N   +  E+L Q+  ++        D   K+      +V        P  
Sbjct: 73  QQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI--SVKFAELMNGPKE 130

Query: 165 ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRN-LVAAVAGGHAVRA 223
             +  + +D D           + A I+Y+SGTTG  KG + T  N   +AV  G A+  
Sbjct: 131 EAEIQEEFDLD-----------EVATIMYTSGTTGKPKGVIQTYGNHWWSAV--GSALNL 177

Query: 224 ARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAP 283
             +     L  VP FH  G +  +RS+  G  +V + KFD  ++ K ++   V+ +    
Sbjct: 178 GLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTII---- 233

Query: 284 PVVLKM 289
            VV  M
Sbjct: 234 SVVSTM 239

Length = 483

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 24/159 (15%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGG-------------HAVRAARSRPAVVLC 233
           D   +LY+ GTTGM KG +  Q ++   + GG                 AA       L 
Sbjct: 4   DDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLP 63

Query: 234 TVPYFHSYGFTCCLRSLGMGESLVCMG--KFDFGRMLKAVEEFRVSHVVL-----APPVV 286
             P  H  G    L +L  G ++V +   KFD  R+ + VE+ RV+ +V+     A P++
Sbjct: 64  ACPLMHGAGQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLL 123

Query: 287 LKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
             +   G     YDLSS+  ++S GA  +  V +  L+L
Sbjct: 124 EALEAAG----RYDLSSLRAISSSGAMWSPEVKQGLLEL 158

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 71/280 (25%), Positives = 109/280 (38%), Gaps = 41/280 (14%)

Query: 37  LLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVR 96
           L ++ A  PD TAL+       + Y  L+ R+  LA  L+         VA  L +    
Sbjct: 6   LEDAAARLPDATALVHH--DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLET 63

Query: 97  VPVLYLSLFSLGVVVSPCNP------------SC------TIPEILRQIHLSKPVIAFAT 138
           V  ++ +  + GV V P NP             C      T  E L  +H + P      
Sbjct: 64  VTAMFGAALAGGVFV-PINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLR 122

Query: 139 H----DTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYS 194
                       +   G      P+   L   D               V  SD AAILY+
Sbjct: 123 TLIIVGDPAHASEGHPGEEPASWPKLLALGDADPP-----------HPVIDSDMAAILYT 171

Query: 195 SGTTGMVKGALLTQRNLVAAVAGGHAV-RAARSRPA-VVLCTVPYFHSYGFTCCLRSLGM 252
           SG+TG  KG +L+ RNL   VAG  +V     +RP   +L  +P    YGF     +  +
Sbjct: 172 SGSTGRPKGVVLSHRNL---VAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYV 228

Query: 253 GESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARD 292
           G ++V         +LKA+E+  ++ +   PP+  ++A+ 
Sbjct: 229 GATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQL 268

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 12/147 (8%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYG-FT 244
            D AA  ++ GTTGM K A  T  N VA    G  +         V C +P FH      
Sbjct: 213 DDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPG-DTVFCGLPLFHVNALLV 271

Query: 245 CCLRSLGMGESLVC---MGKFD---FGRMLKAVEEFRVSHVVLAPPVV-LKMARDGGTMD 297
             L  L  G  +V     G           K VE +R++ +   P V    +      +D
Sbjct: 272 TGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQV---PVD 328

Query: 298 GYDLSSIEVVASGGAHLTLSVIRKYLQ 324
           G+D+SS+     G A L + V R++  
Sbjct: 329 GHDISSLRYALCGAAPLPVEVFRRFEA 355

Length = 632

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 57/248 (22%), Positives = 88/248 (35%), Gaps = 17/248 (6%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           PD  AL+       I Y +L  R    A+    +  + K DV  LL +N       +L L
Sbjct: 51  PDRPALLF--EDQSISYAELNARANRYAHWAAAR-GVGKGDVVALLMENRPEYLAAWLGL 107

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKI----PQLKYGTVL--LDSP 158
             LG VV+  N       +   ++L          +           L     L      
Sbjct: 108 AKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGD 167

Query: 159 EFEPLSATDSLDYY----DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAA 214
             +     + L              R  V+  D A  +Y+SGTTG+ K A+++    + A
Sbjct: 168 TLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKA 227

Query: 215 VAG-GHAVRAARSRPAVVLCTVPYFHSYGFTCCLRS-LGMGESLVCMGKFDFGRMLKAVE 272
           + G G  +R       V+ C +P +H+ G T    S L  G +L    KF   R    V 
Sbjct: 228 MGGFGGLLRLTPD--DVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVR 285

Query: 273 EFRVSHVV 280
            +R +   
Sbjct: 286 RYRATAFQ 293

Length = 600

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFH 239
                  DPA IL++SG+ G+ KG +L+ RNL+A +    AV    +   V+L  +P FH
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTED-VLLGALPLFH 197

Query: 240 SYGFT-CCLRSLGMGESLVCMGK-FDFGRMLKAVEEFRVSHVVLAPPVVLK-MARDGGTM 296
           ++G T   L  L  G  +V      D  ++ + + +++ + ++   P  L+  AR     
Sbjct: 198 AFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKAT-ILCGTPTFLRGYAR---NA 253

Query: 297 DGYDLSSIEVVASGG 311
              D SS+ +V +G 
Sbjct: 254 HPEDFSSLRLVVAGA 268

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA--VVLCTVPYF 238
            +    D A + Y+ GTTG+ KGA+LT RNLVA +    A+  +       +++  +P +
Sbjct: 202 ANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLY 261

Query: 239 HSYGFTC-CLRSLGMG-ESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM 296
           H Y FT  C+  + +G  +++     D   M+K + +++ S  V    + + +  +    
Sbjct: 262 HIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFR 321

Query: 297 DGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
              D S++++  SGG  L L+   ++ ++
Sbjct: 322 K-LDFSALKLTLSGGMALQLATAERWKEV 349

Length = 562

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 187 DPAAILYS-SGTTGMVKGALLTQRNLVAAVAGGHAVRAAR----SRPAVVLCTVPYFHSY 241
           D  A+L++ SGTT   K  L  Q  L+      HA   AR       AV+L  +P+   +
Sbjct: 181 DAGALLFTTSGTTSGPKLVLHRQATLLR-----HARAIARAYGYDPGAVLLAALPFCGVF 235

Query: 242 GFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVV 280
           GF+  L +L  G  LVC   FD  R  +A+   RV+H  
Sbjct: 236 GFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTF 274

Length = 540

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 12/148 (8%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYG-F 243
            D AA  ++ GTTG  K A  + RN VA  A   A   +   P  V+L  +P FH  G  
Sbjct: 2   DDLAAYFHTGGTTGAPKLARHSHRNEVAN-AWM-AALLSGLGPGDVLLNGLPLFHVGGAI 59

Query: 244 TCCLRSLGMGESLVCMGKFDF------GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMD 297
              L  L  G ++V      F          K VE +RV+ ++ A P VL        + 
Sbjct: 60  VTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVT-LLSAVPTVLAALLQ-VPLG 117

Query: 298 GYDLSSIEVVASGGAHLTLSVIRKYLQL 325
             D+SS+    +G A L + V R++  +
Sbjct: 118 DADISSLRYALTGAAPLPVEVARRFEAV 145

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 185 LSDPAAILYSSGTTGMVKGALLTQ-RNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF 243
           + DPA  +Y+SGTTG+ K A+++  R L A    G           V+   +P +HS   
Sbjct: 80  IVDPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPD--DVLYLCLPLYHSNAL 137

Query: 244 TCCLRS-LGMGESLVCMGKFDFGRMLKAVEEFRVSHVV 280
           T    S L  G SL    KF   +    V  +  +   
Sbjct: 138 TVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQ 175

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 75/274 (27%), Positives = 107/274 (39%), Gaps = 26/274 (9%)

Query: 45  PDTTALIDTASRHRIL-YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS 103
           PD TAL+      R   Y +L   +  +A +L     L K D    L  NS    +L+L+
Sbjct: 25  PDKTALVF---GDRSWTYAELDAAVNRVAAALLDL-GLKKGDRVAALGHNSDAYALLWLA 80

Query: 104 LFSLGVVVSPCNPSCTIPE---ILRQ----IHLSKPVIAFATHDTAHKIPQLKYGTVLLD 156
               G V  P N   T  E   IL        L  P +A         +P       L+ 
Sbjct: 81  CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVL 140

Query: 157 SPEFEPLSATDSLDYYD-DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAA- 214
                P    D  D+ +        V ++  D A ILY+SGT  + KGA+LT R L+A  
Sbjct: 141 GGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEY 200

Query: 215 ----VAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLR-SLGMGESLVCMGKFDFGRMLK 269
               VAG     +A   P   L  +P +H       L   L +G + V +   D   +L+
Sbjct: 201 VSCIVAGDM---SADDIP---LHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILR 254

Query: 270 AVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS 303
            +E  R++     P V + + R     D  DLSS
Sbjct: 255 TIEAERITSFFAPPTVWISLLRHPD-FDTRDLSS 287

Length = 523

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 26/244 (10%)

Query: 99  VLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFA------------THDTAHKIP 146
           ++YL+   +G V  P  PS    E++  ++  +  + FA                 +++P
Sbjct: 89  IIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP 148

Query: 147 QLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVR--VSVSLSDPAAILYSSGTTGMVKGA 204
           QL+   V +D  +  P +++ SL     D E +   ++    + AA+L++SGT G+ KG 
Sbjct: 149 QLQ-QIVGVD--KLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGV 205

Query: 205 LLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRS-LGMGESLVCMGKFD 263
           +LT  N++A+    +  R   +   V +   P  H+ GF   + +   +G   V +  F 
Sbjct: 206 MLTHNNILAS-ERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFT 264

Query: 264 FGRMLKAVEEFRVSHVVLAPPVV---LKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIR 320
               L  +E+ R + ++ A P +   L +          DLS++     GG  +   V R
Sbjct: 265 PDACLALLEQQRCTCMLGATPFIYDLLNLLEK----QPADLSALRFFLCGGTTIPKKVAR 320

Query: 321 KYLQ 324
           +  Q
Sbjct: 321 ECQQ 324

Length = 547

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 75/311 (24%), Positives = 129/311 (41%), Gaps = 45/311 (14%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           P+ T++I    + R  +P    R   LA SL     ++K DV  +L+ N    P +Y   
Sbjct: 28  PNRTSII--YGKTRFTWPQTYDRCCRLAASL-ISLNITKNDVVSVLAPN---TPAMYEMH 81

Query: 105 FSL---GVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTA-------HKIP----Q 147
           F++   G V++P N    + +I  ILR    +KP I F             H +      
Sbjct: 82  FAVPMAGAVLNPINTRLDATSIAAILRH---AKPKILFVDRSFEPLAREVLHLLSSEDSN 138

Query: 148 LKYGTVLLDSPEFEPLSATDSLDY---YDDDEERVRVSVSL------SDPAAILYSSGTT 198
           L    + +   +F    +++ LDY       E    +   +       DP ++ Y+SGTT
Sbjct: 139 LNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTT 198

Query: 199 GMVKGALLTQR----NLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGE 254
              KG +++ R    + ++A+ G            V L T+P FH  G+T    +   G 
Sbjct: 199 ADPKGVVISHRGAYLSTLSAIIGWEM-----GTCPVYLWTLPMFHCNGWTFTWGTAARGG 253

Query: 255 SLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHL 314
           + VCM       + K +E   V+H+    P V  +   G ++D    S    V +GG+  
Sbjct: 254 TSVCMRHVTAPEIYKNIEMHNVTHMCCV-PTVFNILLKGNSLDLSPRSGPVHVLTGGSPP 312

Query: 315 TLSVIRKYLQL 325
             ++++K  +L
Sbjct: 313 PAALVKKVQRL 323

Length = 579

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVV--LCTVPYFHSYGF 243
            D A + Y+ GTTG  KG + T R++           A    PA    L   P  H+ G 
Sbjct: 168 PDIAGLAYTGGTTGKPKGVMGTHRSIATMAQ---IQLAEWEWPADPRFLMCTPLSHAGG- 223

Query: 244 TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS 303
              L +L  G +++ + KFD   +L+A+EE R++   L P ++  +  D   +   DLSS
Sbjct: 224 AFFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALL-DHPDLRTRDLSS 282

Query: 304 IEVVASGGA 312
           +E V  G +
Sbjct: 283 LETVYYGAS 291

Length = 524

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 58/251 (23%), Positives = 95/251 (37%), Gaps = 33/251 (13%)

Query: 86  VAFLLSQNSVRVPVLYLSLFSLG---VVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA 142
           VA LL + S  + V  L++   G   V + P  P+  +  IL     +   +       A
Sbjct: 28  VAVLLER-SAELVVAILAVLKAGAAYVPLDPAYPAERLAFILED---AGARLLLTDSALA 83

Query: 143 HKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVK 202
            ++  L    +LLD  E   L                       D A ++Y+SG+TG  K
Sbjct: 84  SRLAGLVLPVILLDPLELAALDDAP-------APPPPDAPSGPDDLAYVIYTSGSTGRPK 136

Query: 203 GALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCC----LRSLGMGESLV 257
           G ++T R+LV  +A     R     P   VL     F S  F         +L  G +LV
Sbjct: 137 GVVVTHRSLVNLLAW--LARRYGLDPDDRVLQ----FASLSFDASVEEIFGALLAGATLV 190

Query: 258 C----MGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAH 313
                  + D   +   + E  V+ + L  P +L +           L+S+ +V  GG  
Sbjct: 191 VPPEDEERDDAALLAALIAEHPVTVLNL-TPSLLALLAA---ALPPALASLRLVILGGEA 246

Query: 314 LTLSVIRKYLQ 324
           LT +++ ++  
Sbjct: 247 LTPALVDRWRA 257

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 178 RVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPY 237
            V ++ S  DPA ++Y+SG+TG  KG ++T RN+   +    A+   R     VL     
Sbjct: 91  TVVLTSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDR-VLQ---- 145

Query: 238 FHSYGFTCCLR----SLGMGESLVCMGKFDFGRML-KAVEEFRVSHVVLAPPVVLKMARD 292
           F S  F   +     +L  G +LV   +      L + +   RV+   L P +       
Sbjct: 146 FASIAFDVSILEIFTTLLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTPSL------- 198

Query: 293 GGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
              +D  D+ S+  +  GG     +++ +
Sbjct: 199 LALLDPEDVPSLRTLILGGEACPQALVDR 227

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 59/220 (26%), Positives = 79/220 (35%), Gaps = 57/220 (25%)

Query: 46  DTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLF 105
           D  AL+D        Y +L  R   LA +L     L    VA L    S    VLYL+++
Sbjct: 1   DRIALVDGGRSLT--YGELDARSGRLAKALLALGLLPGDRVAVLA-PKSAEYVVLYLAIW 57

Query: 106 SLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSA 165
             G V  P NPS    E+   +  S+P +                               
Sbjct: 58  RAGGVAVPLNPSYPAAELAYILSDSQPSLLV----------------------------- 88

Query: 166 TDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAAR 225
                                DPA I+Y+SGTTG  KG +LT  NL A       V A R
Sbjct: 89  ---------------------DPALIIYTSGTTGRPKGVVLTHGNLAANARA--LVEAWR 125

Query: 226 -SRPAVVLCTVPYFHSYG-FTCCLRSLGMGESLVCMGKFD 263
            +   V+L  +P  H +G F      L  G S+  + +FD
Sbjct: 126 WTASDVLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFD 165

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS-RPA-VVLCTVPYFHSYGF 243
            DPAAIL++SG+TG  KG + T R   A +    A+R+    R     L   P F  +G 
Sbjct: 85  DDPAAILFTSGSTGPPKGVVYTHRTFAAQI---DALRSLYGIREGDRDLAAFPPFALFGP 141

Query: 244 TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS 303
              + ++            D  ++ +A+ E   S V  +P ++  +AR      G  L S
Sbjct: 142 ALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEEN-GIQLPS 200

Query: 304 IEVVASGGAHLTLSVIRKYLQL 325
           +  V S GA +   ++R+++  
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVAN 222

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 35/147 (23%)

Query: 185 LSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS-------RPAVVLCTV-- 235
             DPA I+Y+SGTTG  KG + T          G  V+AA+        +P   L  +  
Sbjct: 99  KDDPAMIIYTSGTTGKPKGTVHTH--------AGFPVKAAKDIGFCFDLKPGDRLLWITD 150

Query: 236 ------PYFHSYGFTCCLRSLGMGESLVCM-GKFDF---GRMLKAVEEFRVSHVVLAPPV 285
                 P +   G       L +G ++V   G  D+    R+ + VE  +V+H+ L+P +
Sbjct: 151 MGWMMGP-WLVLG------GLLLGATIVLYEGAPDYPDPDRLWRIVERHKVTHLGLSPTL 203

Query: 286 V-LKMARDGGTMDGYDLSSIEVVASGG 311
           +    A     ++G+DLSS+ V+ S G
Sbjct: 204 IRALRAHGDAPVEGHDLSSLRVLGSTG 230

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 46/189 (24%), Positives = 65/189 (34%), Gaps = 35/189 (18%)

Query: 148 LKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLT 207
           +K G V    P    L   D     +    R  V  S  DPA + ++SGTTG+ K  L T
Sbjct: 46  IKLGAVF--IPGTTQLGPKDIRYRLERAGARAIV-TSADDPALLYFTSGTTGLPKMVLHT 102

Query: 208 QRNLVAAVAGGHAVRAAR-------------SRPAVVLCTVPYFHSYGFTCCLRSLGMGE 254
                 +   GH V  A              + P                       +G 
Sbjct: 103 -----HSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGA-----WSSL---FAPWLLGA 149

Query: 255 S-LVC-MGKFDFGRMLKAVEEFRVSHVVLAPPVVLKM-ARDGGTMDGYDLSSIEVVASGG 311
           +  V    +FD  R L+ +E + V+    APP   +M  +   +   YD S +  V S G
Sbjct: 150 AVFVYHGRRFDAERTLELLERYGVT-TFCAPPTAYRMLLQQDLS--SYDFSHLRHVVSAG 206

Query: 312 AHLTLSVIR 320
             L   VI 
Sbjct: 207 EPLNPEVID 215

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 16/146 (10%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAAR--SRPAVVLCTVPYFHSYGFT 244
           D AAIL++SG+TG  KG + T     A +    A+R         + L T P F  +G  
Sbjct: 175 DMAAILFTSGSTGTPKGVVYTHGMFEAQI---EALREDYGIEPGEIDLPTFPLFALFGP- 230

Query: 245 CCLRSLGMGESLVCM-----GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGY 299
               +LGM   +  M        D  ++  A+E + V+++  +P ++ ++ R G    G 
Sbjct: 231 ----ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN-GI 285

Query: 300 DLSSIEVVASGGAHLTLSVIRKYLQL 325
            L S+  V S GA + ++VI ++  +
Sbjct: 286 KLPSLRRVISAGAPVPIAVIERFRAM 311

Length = 552

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 45/210 (21%), Positives = 68/210 (32%), Gaps = 33/210 (15%)

Query: 153 VLLDSPEF-----------------EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSS 195
           +L DSPE                   PL     L++  DD     +     D A  LY+S
Sbjct: 41  LLPDSPELVAAFLACLKAGAVAVALNPLLTPQDLEHILDDSGAALLVTEADDIAYWLYTS 100

Query: 196 GTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCCLR-SLGMG 253
           GTTG  KG +   R+ +   A   A      +P   +  +   F +YG    L   L  G
Sbjct: 101 GTTGKPKGVMHRHRDPLTF-AEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSG 159

Query: 254 ESLV-CMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA 312
            S V   G      +L  +   R + +   P +   +   G        S    V++G A
Sbjct: 160 ASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGAGSAPLFRSVRLCVSAGEA 219

Query: 313 HLTLSVIRKYLQLNRTVNRQLCLEFGAPII 342
                       L   +  +     G  I+
Sbjct: 220 ------------LPAGLAERWAEATGIEIL 237

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 61/299 (20%), Positives = 103/299 (34%), Gaps = 22/299 (7%)

Query: 37  LLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVR 96
           L +  A  PD  A+ID   R    Y +L  R   LA  L  +  +   D   +   N   
Sbjct: 34  LTDHAARYPDRIAVIDGERRLS--YAELDQRADRLAAGL-RRLGIKPGDTVLVQLPNVAE 90

Query: 97  VPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKP---VIAFATH---------DTAHK 144
             + + +L  LGV      PS    E+       +    ++A             +   K
Sbjct: 91  FYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAK 150

Query: 145 IPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGA 204
            P L+   V++      P     +L  +              + A    S GTTG  K  
Sbjct: 151 HPTLR--HVIVAGEAEHPSVLEAAL-CHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLI 207

Query: 205 LLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTC--CLRSLGMGESLVCMGKF 262
             T  +   +V     +     +  V LC +P  H++  +    L     G ++V     
Sbjct: 208 PRTHNDYYYSVRASAEI-CGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDP 266

Query: 263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
                   +E   V+   L PP+   +       +  DLSS+ ++  GGA L+ ++ R+
Sbjct: 267 SPELCFPLIERHGVTVTALVPPLA-SLWLQAAEWERADLSSLRLLQVGGARLSATLARR 324

Length = 542

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 9/232 (3%)

Query: 25  PETTSVTSYVFSLLESHAPP-PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSK 83
           P  +     +  L+E  A   P+  AL+ TA R  I Y DL   +  LA  L T+  L  
Sbjct: 9   PMASDFGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQL-TRSGLLP 67

Query: 84  YDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHL--SKPVIAFATHDT 141
            D   L   ++    V  L+     +VV P +P+  I E   +     ++ V+  A    
Sbjct: 68  GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPH 127

Query: 142 AHKIPQLKYGTVLLD-SPEFEPLSATDSLDYYDDDEERVRVSVSL---SDPAAILYSSGT 197
               P  ++  + ++   +  P   T S+      E     S       D A I+++ GT
Sbjct: 128 DRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMIMFTGGT 187

Query: 198 TGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRS 249
           TG+ K    T  N+ ++V           R A V   +P +H +G    L +
Sbjct: 188 TGLPKMVPWTHANIASSVRAIITGYRLSPRDATV-AVMPLYHGHGLIAALLA 238

Length = 534

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA-VRAARSRPA-----VVLC 233
            V +   D A + Y+ GTTG+ KGA L  RN+VA V    A ++ A  +         +C
Sbjct: 198 PVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVC 257

Query: 234 TVPYFHSYGFT-CCLRSLGM 252
            +P +H +  T C L  LGM
Sbjct: 258 ALPLYHIFALTVCGL--LGM 275

Length = 557

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 54.0 bits (131), Expect = 5e-08
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-- 243
            D A ++Y+SG+TG  KG ++  R LV  +A     R   +    VL     F S+ F  
Sbjct: 93  DDLAYVIYTSGSTGRPKGVMVEHRGLVNLLA-WLQERYGLTAGDRVLQ----FASFSFDA 147

Query: 244 --TCCLRSLGMGESLVCM---GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG 298
                   L  G +LV        D   + + + E R++ + L  P +L+   D   ++ 
Sbjct: 148 SVWEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHL-VPSLLRALLD--ALEP 204

Query: 299 YDLSSIEVVASGGAHLTLSVIRKYLQLN 326
             L S+ +V  GG  L   ++R++ +L 
Sbjct: 205 AALPSLRLVIVGGEALPAELVRRWRELF 232

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 54.0 bits (131), Expect = 6e-08
 Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 17/145 (11%)

Query: 142 AHKIPQLKYGTVLLDSPEFEPLSATDSL----DYYDDDE-ERVRVSVSLSDPAAILYSSG 196
           + ++P+L+   + L   +   +   D L       DD E    + ++   DP  I Y+SG
Sbjct: 151 SARLPELRR-VIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSG 209

Query: 197 TTGMVKGALLTQRNLVAAVAGGHAV-RAARSRPAVVLC-TVPYFHSYGFTCCLRSLGM-- 252
           TTG  KGA LT RN+   +  G+ +  A +      LC  VP +H +G    L +L    
Sbjct: 210 TTGFPKGATLTHRNI---LNNGYFIGEAMKLTEEDRLCIPVPLYHCFG--MVLGNLACVT 264

Query: 253 -GESLVCMG-KFDFGRMLKAVEEFR 275
            G ++V  G  FD    L AVEE R
Sbjct: 265 HGATMVYPGEGFDPLATLAAVEEER 289

Length = 559

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT 244
           DPA IL++SG+ G  KG +L+ RNL+A  A   A R   S    V   +P FHS+G T
Sbjct: 794 DPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAA-RIDFSPEDKVFNALPVFHSFGLT 850

Length = 1140

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 50/219 (22%), Positives = 79/219 (36%), Gaps = 25/219 (11%)

Query: 108 GVVVSPCNP----SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPL 163
           G +  P  P       +  +   +  +       T      +         L +P    L
Sbjct: 71  GAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAA------LAAPAALLL 124

Query: 164 SATDSLDYYDDDEERVR-VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVR 222
               + D         R       D A + Y+SG+TG  KG ++T  NL+A +      R
Sbjct: 125 LLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRA--IAR 182

Query: 223 AARSRPAVVLCT-VPYFHSYG-FTCCLRSLGMGESLVCMGKFDF----GRMLKAVEEFRV 276
           A    P  V  + +P +H  G     L+ L  G  +V M    F     R L+A+  +R 
Sbjct: 183 AFGLDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPLRWLEAISRYRA 242

Query: 277 SHVVLAPP----VVLKMARDGGTMDGYDLSSIEVVASGG 311
           +    AP     + ++  RD   + G DLSS  V  +G 
Sbjct: 243 TVSG-APNFAYDLCVRRVRDEQ-LAGLDLSSWRVAFNGA 279

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAV-AGGHAVRAARSRPAVVLCTVPYFHS 240
           +    D A I++SSG+ G  KG +L+  N+++ +               V+L ++P+FHS
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDD--VILSSLPFFHS 835

Query: 241 YGFT 244
           +G T
Sbjct: 836 FGLT 839

Length = 1146

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 42/273 (15%)

Query: 65  TLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSC----TI 120
           T RI  +  ++   Y+ S  ++ + L Q+ VR            V+ +    +      +
Sbjct: 90  TARIGAILVNINPAYRAS--ELEYALGQSGVR-----------WVICADAFKTSDYHAML 136

Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSL-----DYYDDD 175
            E+L  +   +P           ++P+L+ G V L         A   L         + 
Sbjct: 137 QELLPGLAEGQP-----GALACERLPELR-GVVSLAPAPPPGFLAWHELQARGETVSREA 190

Query: 176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLV--AAVAGGHAVRAARSRPAVVLC 233
               + S+   DP  I Y+SGTTG  KGA L+  N++            +        LC
Sbjct: 191 LAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVA----ESLGLTEHDRLC 246

Query: 234 T-VPYFHSYGFTCCLRSLGMGESLVCM----GKFDFGRMLKAVEEFRVSHVVLAPPVVLK 288
             VP +H +G    L +LG      C+      FD    L+AVEE R + +   P + + 
Sbjct: 247 VPVPLYHCFG--MVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIA 304

Query: 289 MARDGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
              D      +DLSS+      GA   + V+R+
Sbjct: 305 EL-DHPQRGNFDLSSLRTGIMAGAPCPIEVMRR 336

Length = 558

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAG-GHAVRAARSRPAVVLCTVPYFHSY 241
            D A I+Y+SGTTG  KG +LT  N+VA VAG    V        V +  +P  H +
Sbjct: 111 EDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYISYLPLAHIF 167

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 16/159 (10%)

Query: 180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV---RAARSRP------AV 230
            V V L D A + Y+ GTTG+ KGA+LT  NLVA +    A         +P       V
Sbjct: 201 PVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEV 260

Query: 231 VLCTVPYFHSYGFTC---CLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVV-LAPPVV 286
           ++  +P +H Y FT    C+   G    L+   + D    +K + ++R S ++ L    V
Sbjct: 261 MIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPR-DIPGFIKELGKWRFSALLGLNTLFV 319

Query: 287 LKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
             M   G      D S++++  SGG  L  +   ++ QL
Sbjct: 320 ALMDHPG--FKDLDFSALKLTNSGGTALVKATAERWEQL 356

Length = 562

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 17/231 (7%)

Query: 67  RIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQ 126
            + +LA  L  +  L   DV  + + NS       L++   G +V+P N   +  E    
Sbjct: 41  GVLSLAAGL-LRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSA 99

Query: 127 IHLSKPVIAFATHDTAH--------KIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEER 178
           + L +PV+       +         ++P L +  V L+SP        +S    +  ++R
Sbjct: 100 MLLVRPVMLVTDETCSSWYEELQNDRLPSLMW-QVFLESPSSSVFIFLNSFLTTEMLKQR 158

Query: 179 VRVSVSL------SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVL 232
              +  L       D   I ++SGTTG  KG  ++   L+       A+        V L
Sbjct: 159 ALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAI-VGYGEDDVYL 217

Query: 233 CTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAP 283
            T P  H  G +  L  L +G   V + KFD    L+A+++  V+ ++  P
Sbjct: 218 HTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVP 268

Length = 563

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 167 DSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS 226
           + L +  D        + + D AAILY+SGTTG  KG LLT   L+   A   A R    
Sbjct: 65  EELAHILDH---SGARLIVVDTAAILYTSGTTGPPKGVLLTHAQLLF--AARLAARLLGL 119

Query: 227 RPA-VVLCTVPYFHSYG-FTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPP 284
           RP  V+L  +P FH          +L +G +LV + +F   R    V +   +   L   
Sbjct: 120 RPDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGA 179

Query: 285 VV 286
           + 
Sbjct: 180 MA 181

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 57/235 (24%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 108 GVVVSPCNPSCTIPEI---LRQIH-----LSKPVIAFATHDTAHKIPQLKYGTVLLDSPE 159
           G V  P     T  E    + ++      L  PVI          +  L           
Sbjct: 88  GFVPVPVAVPPTYDEPNAAVAKLRNIWELLGSPVI-LTDAALVAALAGL---RTRAGLEA 143

Query: 160 FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH 219
              L+  +      D            DPA +L +SG+TG+ K  +LT RN++A  AG  
Sbjct: 144 LRVLAIEELRSAPPDAPLHP---ARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAG-- 198

Query: 220 AVRAARSRPA-VVLCTVPYFHSYGF-TCCLR--SLGMGESLVCMGKF--DFGRMLKAVEE 273
            V+     P  V L  +P  H  G     LR   LG  +  V       D  R L  ++ 
Sbjct: 199 TVQVNGFTPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILADPLRWLDLIDR 258

Query: 274 FRVSHVVLAPPVVLKMARD---GGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
           +RV+ +  AP     +  D         +DLSS+  + + G  +    IR++L+L
Sbjct: 259 YRVT-ITWAPNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLEL 312

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 75/325 (23%), Positives = 120/325 (36%), Gaps = 55/325 (16%)

Query: 16  SLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSL 75
           +L  SIAF    T                PD  AL+       I Y +   RI   A  L
Sbjct: 3   NLSASIAFHARRT----------------PDRAALV--YRDQEISYAEFHQRILQAAGML 44

Query: 76  KTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIA 135
             +  + + DV  LL +NS     L  +   LG V  P N             L+   +A
Sbjct: 45  HAR-GIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPIN-----------YRLAADEVA 92

Query: 136 FATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVS------------- 182
           +   D   K+        LL   EF+ + A ++     D   +                 
Sbjct: 93  YILGDAGAKL--------LLVDEEFDAIVALETPKIVIDAAAQADSRRLAQGGLEIPPQA 144

Query: 183 -VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSY 241
            V+ +D   ++Y+SGTT   KG + +  N +   +  H +    +    +L   P +H  
Sbjct: 145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGN-LHWKSIDHVIALGLTASERLLVVGPLYHVG 203

Query: 242 GFTC-CLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
            F    +  L +G +L    +FD   +L A+E  R++   +A PV+L         D +D
Sbjct: 204 AFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMA-PVMLSRVLTVPDRDRFD 262

Query: 301 LSSIEVVASGGAHLTLSVIRKYLQL 325
           L S+     GG     S IR + ++
Sbjct: 263 LDSLAWCIGGGEKTPESRIRDFTRV 287

Length = 497

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 71/302 (23%), Positives = 116/302 (38%), Gaps = 35/302 (11%)

Query: 37  LLESHAPPPDTTALIDTASRH----RILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQ 92
           L    A  PD TA+           R  Y +L   +  +A  L  +  + + DV      
Sbjct: 30  LDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGL-ARLGVGRGDVVSCQLP 88

Query: 93  NSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHL--------SKPVIA---FATHDT 141
           N     VLYL+   +G V++P      +  I R+  L        SK ++    F   D 
Sbjct: 89  NWWEFTVLYLACSRIGAVLNP------LMPIFRERELSFMLKHAESKVLVVPKTFRGFDH 142

Query: 142 AH-------KIPQLKYGTVL--LDSPEFEPLSATDSLDYY-DDDEERVRVSVSLSDPAAI 191
           A        ++P L++  V+    +  FE L  T + +   D      R+     D   +
Sbjct: 143 AAMARRLRPELPALRHVVVVGGDGADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQL 202

Query: 192 LYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLR-SL 250
           +Y+SGTTG  KG + T   L+A +   +A R       V+L   P  H  GF   L   +
Sbjct: 203 IYTSGTTGEPKGVMHTANTLMANIV-PYAERLGLGADDVILMASPMAHQTGFMYGLMMPV 261

Query: 251 GMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASG 310
            +G + V    +D  R  + +    V+  + + P +  + R      G  +SS+      
Sbjct: 262 MLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTR-AVKESGRPVSSLRTFLCA 320

Query: 311 GA 312
           GA
Sbjct: 321 GA 322

Length = 547

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 18/144 (12%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAAR--------SRPAVVLCTVPYF 238
           DPA + ++SGTTG  KG L   R +VA  A    V   R        + P  V  T    
Sbjct: 90  DPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPGWVTGT---- 145

Query: 239 HSYGFTCCLRSLGMGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM- 296
            SYG    +  L  G +LV   G+FD  R    +EE +V+    AP  +  + R G  + 
Sbjct: 146 -SYGI---IAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELA 201

Query: 297 DGYDLSSIEVVASGGAHLTLSVIR 320
             YDLSS+  +AS G  L   V+ 
Sbjct: 202 ARYDLSSLRHIASVGEPLNPEVVV 225

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCC 246
           D A I ++SGTTG+ KG +   R+++A           +  P  V    P      FT  
Sbjct: 148 DVALIGFTSGTTGLPKGTMHFHRDILAI-CDAFPRHVLQPTPDDVFIGSP---PLAFTFG 203

Query: 247 LRSLGM-----GESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDL 301
           L  L +     G S V + +     +LKA++E R + +  AP     M      +  +D+
Sbjct: 204 LGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAML---IKVKAFDI 260

Query: 302 SSIEVVASGGAHLTLSVIRKYLQ 324
           SS+    S G  L   V + + +
Sbjct: 261 SSLRKCVSAGETLPAKVWQDWYE 283

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 189 AAILYSSGTTGMVKGAL--LTQRNL------VAAVAGGHAVRAARSRPAVVLCTVPYFHS 240
           A +LYSSGTTG  KG    L  R++      + A+A         S   +   + P +H+
Sbjct: 151 AVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY---DISESDIYYSSAPIYHA 207

Query: 241 YGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR-DGGTMDGY 299
                C     +G ++V   +FD    L  VE +R++   + P + +++ + D      Y
Sbjct: 208 APLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRY 267

Query: 300 DLSSIEVVASGGA 312
           D+SS+  V    A
Sbjct: 268 DVSSLRAVIHAAA 280

Length = 501

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 58/222 (26%), Positives = 82/222 (36%), Gaps = 59/222 (26%)

Query: 140 DTAHKIPQLKYGTVLL---DSPEFEPLSATDSLDYYD--DDEERVR-VSVSLSDPAAILY 193
           D A ++ Q K   VL+              D LD+ +       V  V V  +DP  ILY
Sbjct: 169 DKALELSQHKPHKVLILNRGQVPAPLKPGRD-LDWAELMAKARPVDCVPVESTDPLYILY 227

Query: 194 SSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS-------RPAVVLCTVPYFHSYGFTCC 246
           +SGTTG  KG     R+      GG+AV    S       +P  V     ++        
Sbjct: 228 TSGTTGKPKG---VVRD-----TGGYAVALKWSMRNIYGIKPGDV-----FW-------A 267

Query: 247 LRSLG--MGESLVCMGKF-----------------DFGRMLKAVEEFRVSHVVLAPP--- 284
              +G  +G S +  G                   D G   + +EE+ V+ +  AP    
Sbjct: 268 ASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIR 327

Query: 285 VVLKMARDGGTMDGYDLSSIEVVASGGAHL---TLSVIRKYL 323
            + K   DG  +  YDLSS+  +   G  L   TL  I K L
Sbjct: 328 AIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIEKTL 369

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 26/309 (8%)

Query: 22  AFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKL 81
           A  P   ++         +    PD  AL+      ++ Y +L  R   LA  L +   +
Sbjct: 221 APIPLRLTIHLLFEEQAATT---PDAVALVRG--GQQLTYAELDARANRLARLLISLG-V 274

Query: 82  SKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPE--ILRQIHLSKPVIAFATH 139
              +   +L+  S+ + V  L++   G    P +P    P   +   +  S+P +     
Sbjct: 275 GPGETVAILADRSLELVVALLAVLKAGAAYVPLDPL--YPAERLAYILEDSRPTLLLTQA 332

Query: 140 DTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTG 199
                   +    + LD    E             D + +  ++     A I+Y+SG+TG
Sbjct: 333 HLRV--DDVGLPGLALDDALSE-----------IPDTDPIPQALLGDALAYIIYTSGSTG 379

Query: 200 MVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYF--HSYGFTCCLRSLGMGESLV 257
             KG  +  R L   +    A     +   V+      F    +     L          
Sbjct: 380 QPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAP 439

Query: 258 CMGKFDFGRMLKAVEEFRVSHVVLAPP-VVLKMARDGGTMDGYDLSSIEVVASGGAHLTL 316
            + + D   +L+ +E   ++ ++L P  + L +              +  + SGG  L L
Sbjct: 440 ALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPL 499

Query: 317 SVIRKYLQL 325
           +++++ LQL
Sbjct: 500 ALVQRLLQL 508

Length = 642

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAG 217
            D A I Y+SGTTG  KG +LT  NL+A VAG
Sbjct: 221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAG 252

Length = 651

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAV--AGGHAVRAARSRPAVVLCTVP 236
           V+  +   D A + Y+ GTTG+ KGA+LT RN++A +  A             +V+  +P
Sbjct: 199 VKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALP 258

Query: 237 YFHSYGFTC-CLRSLGMG 253
            +H +  T  CL  + +G
Sbjct: 259 LYHIFALTVNCLLFIELG 276

Length = 560

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 65/277 (23%), Positives = 102/277 (36%), Gaps = 16/277 (5%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           PD  AL+         + ++  R+  LA +L  +  + K D   + S+N  ++     + 
Sbjct: 21  PDRIALVWGDRS--WTWREIDARVDALAAALAAR-GVRKGDRILVHSRNCNQMFESMFAA 77

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVI-----AFATHDTAHKIPQLKYGTVL-LDSP 158
           F LG V  P N   T  E+      S          F  H  A +        V+ +   
Sbjct: 78  FRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGA 137

Query: 159 EFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGG 218
                     +  +         +V   DP    ++SGTTG  K A+LT   + A V   
Sbjct: 138 RAGL-DYEALVARHLGARVAN-AAVDHDDPCWFFFTSGTTGRPKAAVLTHGQM-AFVITN 194

Query: 219 HA--VRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFR 275
           H   +    +     L   P  H  G    C  + G    L+   +FD   +   VE  R
Sbjct: 195 HLADLMPGTTEQDASLVVAPLSHGAGIHQLCQVARGAATVLLPSERFDPAEVWALVERHR 254

Query: 276 VSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA 312
           V++ +   P +LKM  +   +D YD SS+  V   GA
Sbjct: 255 VTN-LFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGA 290

Length = 528

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 75/312 (24%), Positives = 116/312 (37%), Gaps = 54/312 (17%)

Query: 41  HAPPP--DTTAL--IDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVR 96
           HA     D  AL  +D + + +  Y +L       A  LK +  + K D  F+      R
Sbjct: 52  HADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLK-ELGVEKGDRVFIFMP---R 107

Query: 97  VPVLYLSLFS---LGVVVSPCNPSCTIPEILRQ-IHLSKPVIAFATHD-----TAHKIPQ 147
           +P LY +L      G +V P      + E +R  +  S+  +   T        A  +P 
Sbjct: 108 IPELYFALLGALKNGAIVGPLF-EAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPS 166

Query: 148 LKYGTVLL---DSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGA 204
           LK   VLL   D  E       ++L     DE  +       D A + Y+SG+TG  KG 
Sbjct: 167 LK--HVLLVGEDVEEGPGTLDFNALMEQASDEFDI-EWTDREDGAILHYTSGSTGKPKGV 223

Query: 205 LLTQRNLVAAVAGGHAVRAARSRPAVVLCTV--------------PYFHSYGFTCCLRSL 250
           L     ++     G  V        V  CT               P+ +  G T  +   
Sbjct: 224 LHVHNAMLQHYQTGKYVLDLHEDD-VYWCTADPGWVTGTSYGIFAPWLN--GATNVIDG- 279

Query: 251 GMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSIEVVA 308
                    G+F   R  + +E+++V+ V    P  ++M    G   +  YDLSS+  + 
Sbjct: 280 ---------GRFSPERWYRILEDYKVT-VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHIL 329

Query: 309 SGGAHLTLSVIR 320
           S G  L   V+R
Sbjct: 330 SVGEPLNPEVVR 341

Length = 570

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 189 AAILYSSGTTGMVKGALLTQRN--LVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCC 246
           A + Y+SGTTG  KG L + R+  L A +A         +    +L  VP FH+  +   
Sbjct: 180 AGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAAD-TMLPVVPLFHANSWGIA 238

Query: 247 LRSLGMGESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIE 305
             +  MG  LV  G K D   + + ++  +V+      P V  M       +G  L  ++
Sbjct: 239 FSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTA-GVPTVWLMLLQYMEKEGLKLPHLK 297

Query: 306 VVASGGAHLTLSVIRKYL 323
           +V  GG+ +  S+I+ + 
Sbjct: 298 MVVCGGSAMPRSMIKAFE 315

Length = 542

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFH 239
           +D A I+Y+SG+TG+ KG ++T  N+VA VAG   V     +  V L  +P  H
Sbjct: 250 NDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAH 303

Length = 696

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 57/233 (24%), Positives = 91/233 (39%), Gaps = 24/233 (10%)

Query: 42  APPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLY 101
                 TA ID  S   + Y +L  +++ L  +L+    + + +   LL  + V  P+ +
Sbjct: 16  EGRGGKTAFIDDISS--LSYGELEAQVRRLGAALRR-LGVKREERVLLLMLDGVDFPIAF 72

Query: 102 LSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATH-------DTAHKIPQLKYGTVL 154
           L     G+V    N   T  +    +  S+  + F +            K P L++  V+
Sbjct: 73  LGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVV 132

Query: 155 LDSP----EFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRN 210
                   +   L AT+S       E+    +    DPA  LYSSG+TGM KG + T  N
Sbjct: 133 GRPEAGEVQLAELLATES-------EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSN 185

Query: 211 LVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCCLR-SLGMGESLVCMGK 261
                A  +A      R   VV      F +YG    L   + +G + V MG+
Sbjct: 186 PY-WTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE 237

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCT-VPYFH 239
            +V   D AAILY+SGTTG  KG             G ++          VL T +P FH
Sbjct: 175 AAVQPGDTAAILYTSGTTGPSKGVCCPHAQFY--WWGRNSAEDLEIGADDVLYTTLPLFH 232

Query: 240 SYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEE 273
           +       ++L  G + V   +F       AV  
Sbjct: 233 TNALNAFFQALLAGATYVLEPRFSASGFWPAVRR 266

Length = 542

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTC 245
            D A I +SSG+TG  KG +LT +NL+  +       A  +   V L  +P  H  G   
Sbjct: 106 DDIAFIQFSSGSTGEPKGVILTHKNLLTNIE-AIIEAAEITSEDVFLSWMPLTHDMGLIG 164

Query: 246 C-LRSLGMGESLVCMGKFDFGRM----LKAVEEFRVSHVVLAPP-----VVLKMARDGGT 295
             L    +G +   M    F R     L    + R +  +L+ P      +LK  +    
Sbjct: 165 FHLTPTALGINQYLMPTRLFIRRPLLWLDKASQHRAT--ILSSPNFGYKYLLKHFKTEKI 222

Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
           +D +DLSS+ ++ +G   ++  +  ++L+
Sbjct: 223 ID-WDLSSVRLIFNGAEPISADLCEEFLE 250

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 34/182 (18%)

Query: 85  DVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLS--KPVIAFATHDTA 142
           DV  L  +N +    L+L L  +GV  +  N +  +  +L  I +S  K +I        
Sbjct: 29  DVVALFMENRLEFVALWLGLAKIGVETALINSNLRLESLLHCITVSKAKALI------FN 82

Query: 143 HKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVK 202
              P L       + P  + ++  D L Y                    +Y+SGTTG+ K
Sbjct: 83  LLDPLLT--QSSTEPPSQDDVNFRDKLFY--------------------IYTSGTTGLPK 120

Query: 203 GALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCCL-RSLGMGESLVCMG 260
            A++         AG +   A   RP  VV   +P +HS G    + ++L  G ++V   
Sbjct: 121 AAVIVHSRYYRIAAGAY--YAFGMRPEDVVYDCLPLYHSAGGIMGVGQALLHGSTVVIRK 178

Query: 261 KF 262
           KF
Sbjct: 179 KF 180

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 23/182 (12%)

Query: 80  KLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPS-CTIPE---ILRQIH-LSKPVI 134
            L       +LS NS+   ++ L+    GV  +P +P+   +      L+ +  L KP +
Sbjct: 101 GLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRV 160

Query: 135 AFATH----DTAHKIPQLKYGTVLL--------DSPEFEPLSATDSLDYYDDDEERVRVS 182
            FA        A     L   TV+          S  F  L+AT               +
Sbjct: 161 VFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFADLAATPP----TAAVAAAIAA 216

Query: 183 VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA--ARSRPAVVLCTVPYFHS 240
           ++    A  L++SG+TGM K  + TQR + A +A    +R       P V L  +P+ H+
Sbjct: 217 ITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHT 276

Query: 241 YG 242
            G
Sbjct: 277 MG 278

Length = 624

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 15/138 (10%)

Query: 108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGT--VLLDSPEFEPLSA 165
           G+V    NP+     + R I  +   +       A  +  L  G   + +DSP +     
Sbjct: 78  GIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPAW----- 132

Query: 166 TDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAAR 225
            D L  + D E   RV     D   ++++SGT+G  K    T R + +A   G  + A R
Sbjct: 133 ADELAAHRDAEPPFRV-ADPDDLFMLIFTSGTSGDPKAVRCTHRKVASA---GVML-AQR 187

Query: 226 ---SRPAVVLCTVPYFHS 240
                  V   ++P FHS
Sbjct: 188 FGLGPDDVCYVSMPLFHS 205

Length = 529

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 187 DPAAILYSSGTTGMVKG--------ALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYF 238
           D  A+ Y+SGTTG  KG         L    N++A     H V          L T+P F
Sbjct: 183 DAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPV---------YLWTLPMF 233

Query: 239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKM 289
           H  G+           + VC+ K D   +   + E  V+H   A P+VL  
Sbjct: 234 HCNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGA-PIVLSA 283

Length = 545

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSR----PAVVLCTVPYFHSYG 242
           D A + Y+ GTTG+ KGA+LT RNLVA +   H   A   +      VV+  +P +H + 
Sbjct: 209 DIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFA 268

Query: 243 FT 244
            T
Sbjct: 269 LT 270

Length = 560

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFH 239
           R  VS+   A  +Y+SGTTG+ K A ++   ++   +G  ++    +   VV  T+P +H
Sbjct: 136 RSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQC-SGMLSLCGVTADD-VVYTTLPLYH 193

Query: 240 SYGFTCCLRS-LGMGESLVCMGKF 262
           S G    +   +G+G +LV   KF
Sbjct: 194 SSGALLGIVGCIGLGATLVLKPKF 217

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 20/184 (10%)

Query: 158 PEFEPLSATDSLDYYDDDEERVRVSVSLSDP-----AAILYSSGTTGMVKGALLTQRNLV 212
           P   P+ A D     +     +R ++ + +P     A ++ +SGTTG  KGA+LT   L 
Sbjct: 7   PALLPVPAQD-----ERRAALLRDALRVGEPIDDDVALVVATSGTTGTPKGAMLTAAAL- 60

Query: 213 AAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCM---GKFDFGRMLK 269
              A   A       P   L  +P  H  G    +RS+  G   V +     FD   + +
Sbjct: 61  --TASADATHDRLGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSAGFDPTALPR 118

Query: 270 AVEEFRV--SHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR 327
           AV E      +  L P  + K   D        L+ ++ V  GG      V+        
Sbjct: 119 AVAELGGGRRYTSLVPMQLAKALDDPAATAA--LAELDAVLVGGGPAPAPVLDAAAAAGI 176

Query: 328 TVNR 331
            V R
Sbjct: 177 NVVR 180

Length = 358

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 5/137 (3%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFT- 244
           D  A +Y+SGTTG+ KG  +    L A     +   A   R   V         +YG   
Sbjct: 89  DLFAQMYTSGTTGLPKGVPVPLNALAA--FYAYMRYAIDLRDDDVFWNIADPGWAYGLYY 146

Query: 245 CCLRSLGMGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS 303
                L MG + V + G F        +E   V++   +P     +   G          
Sbjct: 147 AITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAARIKLK 206

Query: 304 IEVVASGGAHLTLSVIR 320
           + V +S G  L   V+R
Sbjct: 207 LRVASSAGEPLNPEVVR 223

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 156 DSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAV 215
             P  + +S+   L             +S  D A IL++SGTT   KG ++T  NL  A 
Sbjct: 143 ALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFA- 201

Query: 216 AGGH--AVRAARSRPAVVLCTVPYFHSYGFTC--CLRSLGMGESLVCMGKFDFGRMLKAV 271
             G+  A + A     V L  +P FH     C   + +   G + V + K+        V
Sbjct: 202 --GYYSAWQCALRDDDVYLTVMPAFHI-DCQCTAAMAAFSAGATFVLLEKYSARAFWGQV 258

Query: 272 EEFR 275
            ++R
Sbjct: 259 CKYR 262

Length = 517

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 181 VSVSLSDPAAILYSSGTTGMVKGALLT-QRNLVAAVAGGHAVRAARSRPAVVLCTVPYFH 239
           V V   DPAA++Y+SGTTG+ KG  ++ +R LV +    H +      P      +P +H
Sbjct: 82  VIVDPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQ--FPDRTYTCMPLYH 139

Query: 240 SYGFTCCLRSLGMGESLVCMG-KFDFGRMLKAVEEFRVSHVV 280
                  L         +C+  KF   +  K V +   + + 
Sbjct: 140 GTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQ 181

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 18/134 (13%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCC 246
           D A IL++SGT  + KG  LT  NL+A         + +    V++  +P FH+YGF  C
Sbjct: 184 DVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDD-VMMSFLPPFHAYGFNSC 242

Query: 247 -LRSLGMGESLVCMGKFDFGRML--KAVEEFRVSHVVL--APPV----VLKMARDGGTMD 297
            L  L  G  +V    F +  +   K VE    + V    + PV    +LK A+   +  
Sbjct: 243 TLFPLLSGVPVV----FAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQES-- 296

Query: 298 GYDLSSIEVVASGG 311
              L S+  V  GG
Sbjct: 297 --CLPSLRFVVIGG 308

Length = 539

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 20/143 (13%)

Query: 191 ILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAA-------RSRPAVVLCTVPYFHSYGF 243
           IL +SGTTG  KGA  +         GG     A       R+    V+   P FH++GF
Sbjct: 201 ILLTSGTTGTPKGARRSG-------PGGIGTLKAILDRTPWRAEEPTVI-VAPMFHAWGF 252

Query: 244 TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPV---VLKMARDGGTMDGYD 300
           +  + +  +  ++V   +FD    L  ++  R + + + P +   ++ +  +    + Y 
Sbjct: 253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV--RNRYS 310

Query: 301 LSSIEVVASGGAHLTLSVIRKYL 323
             S+   A+ G+ +   V+  ++
Sbjct: 311 GRSLRFAAASGSRMRPDVVIAFM 333

Length = 537

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 59/281 (20%), Positives = 102/281 (36%), Gaps = 20/281 (7%)

Query: 45  PDTTALIDTASRHRIL-YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS 103
            D  AL         L Y +L   +     +L+ +  + + +   L+  ++   P  +  
Sbjct: 19  GDKIALYY---DDGSLTYGELQEEVNRWGNALR-ELGIERENRVLLILLDTPEFPTAFWG 74

Query: 104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHD-------TAHKIPQLKYGTVLLD 156
              +G V  P N   T  +    ++ S+  +   + +          K P L++  V+  
Sbjct: 75  AIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGG 134

Query: 157 SPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNL-VAAV 215
           +     LS    +      EE    + S  D A  LYSSG+TG  KG +    ++ V A 
Sbjct: 135 AGPGA-LSYAQLIA--TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAE 191

Query: 216 AGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRS-LGMGESLVCMGKF-DFGRMLKAVEE 273
           A    V        VV      F +YG    L   L +G + V M +      +   +E 
Sbjct: 192 AYAKNVLGITEDD-VVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIER 250

Query: 274 FRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHL 314
           ++ +     P +   M       +  DLSS+ +  S G  L
Sbjct: 251 YKPTVFFGVPTLYAAMLAAPEKPE-RDLSSLRLCVSAGEAL 290

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 189 AAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA-ARSRPAVVLCTVPYFHSYG 242
           A  L++SG+TG+ K  + T R L A  A            P V++  +P+ H++G
Sbjct: 167 AKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFG 221

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 39/235 (16%), Positives = 65/235 (27%), Gaps = 40/235 (17%)

Query: 81  LSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHD 140
           +   D    L  N  R    Y ++  +G V+   NP  +  EI   ++ ++  +     +
Sbjct: 46  VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN 105

Query: 141 ---------------TAHKIPQLKYGT----VLLDSPEFEPLSATDSLDYYDDDEERVRV 181
                              +   K             E                      
Sbjct: 106 LLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPE------------- 152

Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRP-AVVLCTVPYFHS 240
                    + Y++GTTG+ KG + + R LV        V         VVL  VP FH 
Sbjct: 153 ----RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 208

Query: 241 YGFTCCLRSLGMGESLVCMGKFDFGRML-KAVEEFRVSHVVLAPPVV--LKMARD 292
             +     +  +G   V  G       L +  +   V+     P V   L    +
Sbjct: 209 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLE 263

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 47/259 (18%), Positives = 73/259 (28%), Gaps = 67/259 (25%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           PD  AL+       + Y +L  R   LA  L      +   VA    + S       L+ 
Sbjct: 5   PDRPALVVG--GDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHK-SPDAYAAILAC 61

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLS 164
              G    P +PS     I + +  + P                                
Sbjct: 62  LKAGAAYVPLDPSQPAERIAKILEAAGPAALV---------------------------- 93

Query: 165 ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAA 224
                   D D           D A IL++SG+TG  KG  ++  NL + +     V   
Sbjct: 94  -------ADPD-----------DLAYILFTSGSTGKPKGVQISHANLASFL--DWMVEDF 133

Query: 225 RSRPA-VVLCTVPY------FHSYGFTCCLRSLGMGESLVCMGKFDFGRMLK---AVEEF 274
                 V     P+      F  +     L S   G +L  + K      L     ++E 
Sbjct: 134 DLTEGDVFSNQAPFSFDLSVFDLFP---ALAS---GATLYVIPKEQIADPLALFEFLKEH 187

Query: 275 RVSHVVLAPPVVLKMARDG 293
            ++  V  P     +    
Sbjct: 188 GLTVWVSVPSFASLLLLSR 206

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 30/140 (21%)

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVP---YF---- 238
           ++P+ ILY+SGTTG  KG    QR+      GG+AV  A S    +        +F    
Sbjct: 233 NEPSYILYTSGTTGKPKGV---QRD-----TGGYAVALATSMD-TIFGGKAGETFFCASD 283

Query: 239 ------HSYGFTCCLRSLGMGESLVCMG---KFDFGRMLKAVEEFRVSHVVLAPPV--VL 287
                 HSY     L + GM  +++  G   + D G   + VE+++V+ +  AP    VL
Sbjct: 284 IGWVVGHSYIVYAPLLA-GMA-TIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVL 341

Query: 288 KMARDGGTMDGYDLSSIEVV 307
           K  +D   +  +DLSS+  +
Sbjct: 342 K-KQDPALLRKHDLSSLRAL 360

Length = 629

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA--VVLCTVPY 237
            V     D A +  +SG+TG  K   +T  NL A         AA       V++  +P 
Sbjct: 146 PVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFV--AAEFDVETDVMVSWLPL 203

Query: 238 FHSYGFTCCLRSLGM--GESLVCMGKFDFGR----MLKAVEEFRVSHVVLAP----PVVL 287
           FH  G    L ++ M  G  LV +   DF R      + + ++R + +  AP     ++ 
Sbjct: 204 FHDMGMVGFL-TVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGT-MTAAPNFAYALLA 261

Query: 288 KMARDGGTMDGYDLSSIEVVASGG 311
           +  R       +DLSS+    +G 
Sbjct: 262 RRLRRQAKPGAFDLSSLRFALNGA 285

Length = 545

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 65/274 (23%), Positives = 104/274 (37%), Gaps = 36/274 (13%)

Query: 45  PDTTAL----IDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL 100
           PD  AL        +  R  Y +L  R+  +A  L  +  + + DV      N      L
Sbjct: 36  PDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLA-RLGVGRGDVVSFQLPNRWEFTAL 94

Query: 101 YLSLFSLGVVVSPCNPSCTIPEILRQIHL--------SKPVI---AFATHDTA------- 142
           YL+   +G V++P  P      I R+  L        SK  +    F   D A       
Sbjct: 95  YLACARIGAVLNPLMP------IFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQ 148

Query: 143 HKIPQLKYGTVLLDS---PEFEPLSATDSLDYYDDDEERVRVS-VSLSDPAAILYSSGTT 198
            K+P L+   V++D      F+ +  T   D   D    +     S  D   ++Y+SGTT
Sbjct: 149 SKLPALRQ-VVVIDGDGDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTT 207

Query: 199 GMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLR-SLGMGESLV 257
           G  KG + T   L + +   +A R       V+L   P  H  GF   L   L +  + V
Sbjct: 208 GEPKGVMHTANTLFSNIH-PYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAV 266

Query: 258 CMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR 291
               ++  R  + + E  V+  + + P +  + R
Sbjct: 267 LQDIWNPARAAELIRETGVTFTMASTPFLTDLCR 300

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 24/196 (12%)

Query: 31  TSYVFSLLESHAPPPDTTAL---IDTASRHRIL-YPDLTLRIKTLAYSLKTKYKLSKYDV 86
            + V +L    A  PD  AL    D      +L Y DL LR +T+A +L+ +      D 
Sbjct: 9   LTLVQALQRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASFG--DR 66

Query: 87  AFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHL---------SKPVIAFA 137
           A LL  +       +      GV+  P  P    PE  R+ H          ++P +   
Sbjct: 67  AVLLFPSGPDYVAAFFGCLYAGVIAVPAYP----PESARRHHQERLLSIIADAEPRLLLT 122

Query: 138 THDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGT 197
             D    + Q++     L +     L   D+LD    +  +   ++   D A + Y+SG+
Sbjct: 123 VADLRDSLLQMEE----LAAANAPELLCVDTLDPALAEAWQ-EPALQPDDIAFLQYTSGS 177

Query: 198 TGMVKGALLTQRNLVA 213
           T + KG  ++  NLVA
Sbjct: 178 TALPKGVQVSHGNLVA 193

Length = 4334

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 23/174 (13%)

Query: 44  PPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS 103
            P   AL    +   + +  L  RI  LA     +  + +     L  +NS    + YL+
Sbjct: 16  RPQAIALRL--NDEVLTWQQLCARIDQLAAGF-AQQGVVEGSGVALRGKNSPETLLAYLA 72

Query: 104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPL 163
           L   G  V P NP   +P+ L +  L    + FA                 L S   + +
Sbjct: 73  LLQCGARVLPLNPQ--LPQPLLEELLPSLTLDFALVLEGENTFS------ALTSLHLQLV 124

Query: 164 SATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG 217
               ++ +     +R          A +  +SG+TG+ K A+ T +  +A+  G
Sbjct: 125 EGAHAVAW---QPQR---------LATMTLTSGSTGLPKAAVHTAQAHLASAEG 166

Length = 458

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 184 SLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRP 228
              D A I+Y+SGTTG  KG +L+      A  G   +      P
Sbjct: 135 EPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQG--TIEIIGLTP 177

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 27/126 (21%)

Query: 106 SLGVVVSPCNPSCTIPEILRQIHLSKPVIAFA---------THDTAHKIPQLKYG----- 151
           S+G + S C+P   +  +L +    +P + FA          HD   KI ++  G     
Sbjct: 133 SIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLE 192

Query: 152 -TVL---LDSPEFEPLSATDSLDYYDDD-----EERVRVSVSLSDPAAILYSSGTTG--- 199
             V+   L S          +L                  +    P  ILYSSGTTG   
Sbjct: 193 AVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPK 252

Query: 200 -MVKGA 204
            +V GA
Sbjct: 253 CIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 25/155 (16%)

Query: 189 AAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVP-----------Y 237
           A I Y+SG+TG  KG  L+   L   VA   A   A   P   LC +P           Y
Sbjct: 115 AKITYTSGSTGQPKGVCLSAAAL-ETVAQSLAEAIAILEPERHLCLLPLATLLENIAGVY 173

Query: 238 FHSYGFTCC----LRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPV--VLKMAR 291
                        L  LG+  S       D  + + A+  ++   ++L P +   L  A 
Sbjct: 174 APLLMGATVILVPLAELGLSGS----SGLDPAQFVAALSRWQPHSLILVPQLLMALVAAV 229

Query: 292 DGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN 326
           + G +      S+  VA GGA ++ S++++   L 
Sbjct: 230 EQGPL---PPESLRFVAVGGARVSPSLLQRARALG 261

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 34/145 (23%)

Query: 187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS-------RPA-VVLCT--VP 236
           DP  ILY+SG+TG  KG L T         GG+ + AA +       +   +  CT  V 
Sbjct: 237 DPLFILYTSGSTGKPKGVLHTT--------GGYLLYAAMTMKYVFDIKDGDIFWCTADVG 288

Query: 237 YF--HSYGFTCCLRSLGMGESLVCMGKF-------DFGRMLKAVEEFRVSHVVLAPPVVL 287
           +   HSY        L  G + V M  F       D GR  + +E+ +V+    AP  + 
Sbjct: 289 WITGHSYI---VYGPLANGATTV-M--FEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIR 342

Query: 288 KMARDGGT-MDGYDLSSIEVVASGG 311
            + R G   +  +DLSS+ ++ S G
Sbjct: 343 ALMRLGDEWVKKHDLSSLRLLGSVG 367

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN03051	499	acyl-activating enzyme; Provisional	99.98
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.96
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.96
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.85
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.83
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.79
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.68
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.58
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.57
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.17
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.09
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	98.48
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	96.96
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.93
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	91.33
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	89.73
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	82.58

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=7.9e-46  Score=323.03  Aligned_cols=313  Identities=18%  Similarity=0.199  Sum_probs=260.3

Q ss_pred             CCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCch
Q 045351           17 LRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVR   96 (349)
Q Consensus        17 ~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~   96 (349)
                      ....+++..  .|+.+.+...+  +.. ||+.|++....+.++||++|.+.++++|+.|.. +|+++||||++..||+.+
T Consensus        41 g~~~ipl~~--~Tigq~l~~~t--~~v-~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~-lGL~kGDrVgvwgpN~~~  114 (596)
T KOG1177|consen   41 GCSQIPLDS--ETIGQLLETTT--ERV-PDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLS-LGLKKGDRVGVWGPNSYE  114 (596)
T ss_pred             CCCCCCccc--ccHHHHHHHHh--hcc-CcceEEEEeeccchhhHHHHHHHHHHHHhhHHh-hcCCCCCEEEEecCChHH
Confidence            334444544  89999999999  999 999999988778889999999999999999998 999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc-----ccc---------------c---Ccc-e
Q 045351           97 VPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK-----IPQ---------------L---KYG-T  152 (349)
Q Consensus        97 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~~---------------~---~~~-~  152 (349)
                      |+++.+||.++|.+.+++||.+..+++++.+++.+.+++|+...+...     +.+               .   ... +
T Consensus       115 w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthv  194 (596)
T KOG1177|consen  115 WVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHV  194 (596)
T ss_pred             HHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEE
Confidence            999999999999999999999999999999999999999998643211     111               0   011 2


Q ss_pred             EEeCCCC-------ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCC
Q 045351          153 VLLDSPE-------FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAAR  225 (349)
Q Consensus       153 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~  225 (349)
                      +..+.+.       +.+++...... .-...........||+.+-|.|||||||.|||+.+||.|++++........+ +
T Consensus       195 i~~~ed~~~~Ga~~~sev~~~~s~~-~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g-~  272 (596)
T KOG1177|consen  195 ILADEDHPLPGAFLLSEVLKAASKE-ERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAG-Y  272 (596)
T ss_pred             EecCCCCcCCCceehHHHHHhcchH-HHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhC-c
Confidence            2222110       11111111000 0011122334667899999999999999999999999999999999888888 6


Q ss_pred             CCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEc-CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcc
Q 045351          226 SRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS  303 (349)
Q Consensus       226 ~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~  303 (349)
                      .++.++++..|+||.+|. .+++.+|..|+++|++ +.|++...+++|.++++|.++++|+++..|++.+ ....+++++
T Consensus       273 ~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~-~~~~~~~s~  351 (596)
T KOG1177|consen  273 NEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIP-QKQQVDLSS  351 (596)
T ss_pred             CcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcch-hhccCchhh
Confidence            888899999999999997 8999999999999997 5799999999999999999999999999999999 999999999


Q ss_pred             hheehccCCCCCHHHHHHHHHHc---CCcccccccccC
Q 045351          304 IEVVASGGAHLTLSVIRKYLQLN---RTVNRQLCLEFG  338 (349)
Q Consensus       304 lr~i~~gG~~l~~~~~~~~~~~~---~~~~~~~~~~~G  338 (349)
                      +|.++.||+++++++++.+.+..   +....|+.||++
T Consensus       352 lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts  389 (596)
T KOG1177|consen  352 LRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETS  389 (596)
T ss_pred             hhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccC
Confidence            99999999999999999999955   445556778875

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=7.2e-44  Score=328.43  Aligned_cols=307  Identities=20%  Similarity=0.224  Sum_probs=246.6

Q ss_pred             cchhhh-hhcccCCCCCCCCCeEEEeCCC---CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHH
Q 045351           28 TSVTSY-VFSLLESHAPPPDTTALIDTAS---RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS  103 (349)
Q Consensus        28 ~tl~~~-l~~~~~~~~~~~~~~ai~~~~~---~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA  103 (349)
                      .|+... ++... .... ++++|+++..+   .+.+||+||.+.++++|+.|++..|+ +||||++++|+.+|.++++||
T Consensus         8 lN~~~n~~dr~~-~~~~-~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA   84 (528)
T COG0365           8 LNLALNALDRHL-EADR-PDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLA   84 (528)
T ss_pred             eechhhhhhhhh-hccC-CCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHH
Confidence            444433 44443 1234 78999998633   27899999999999999999864678 999999999999999999999


Q ss_pred             HHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcc---------eEEeCCCC--ccccccccCCCCC
Q 045351          104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYG---------TVLLDSPE--FEPLSATDSLDYY  172 (349)
Q Consensus       104 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~~  172 (349)
                      |+++|++++|+.+..+.+++...+++++++++++++......+.....         +++.+...  +.+....      
T Consensus        85 ~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~------  158 (528)
T COG0365          85 TARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEK------  158 (528)
T ss_pred             HHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhc------
Confidence            999999999999999999999999999999999998766554431110         22222211  1111111      


Q ss_pred             CCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhh
Q 045351          173 DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLG  251 (349)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~  251 (349)
                       ............+|+++|+|||||||.||||+++|..++............+.++|++++..++.|++|. ..++.+|.
T Consensus       159 -~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~  237 (528)
T COG0365         159 -ASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLA  237 (528)
T ss_pred             -cCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHh
Confidence             1112223348889999999999999999999999998888776655433336799999999999999999 56899999


Q ss_pred             cCCEEEEcCC--C-CHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC-
Q 045351          252 MGESLVCMGK--F-DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR-  327 (349)
Q Consensus       252 ~G~~~v~~~~--~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~-  327 (349)
                      +|+++++.+.  + ++..+++.|+++++|.++++|+.++.|.+.. ..+++++++||.+.++||||+++.++++.+.++ 
T Consensus       238 ~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g-~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~  316 (528)
T COG0365         238 SGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLG-LGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGV  316 (528)
T ss_pred             cCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcC-CcccccchhheeeeccCCCCCHHHHHHHHHHhCC
Confidence            9999999852  3 4999999999999999999999999999997 578899999999999999999999999999974 


Q ss_pred             -CcccccccccCceeeecC
Q 045351          328 -TVNRQLCLEFGAPIISLS  345 (349)
Q Consensus       328 -~~~~~~~~~~G~~~i~~~  345 (349)
                       ....++.||+|++++.-.
T Consensus       317 ~i~d~~gqTEtg~~~~~~~  335 (528)
T COG0365         317 WILDIYGQTETGMGFIAGR  335 (528)
T ss_pred             CEeccccccccCccccCCC
Confidence             456677899986655443

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-42  Score=319.86  Aligned_cols=292  Identities=33%  Similarity=0.458  Sum_probs=238.4

Q ss_pred             eEEEeCC-CCceeeHHHHHHHHHHHHHHHhhhcC--CCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHH
Q 045351           48 TALIDTA-SRHRILYPDLTLRIKTLAYSLKTKYK--LSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEIL  124 (349)
Q Consensus        48 ~ai~~~~-~~~~~Ty~~l~~~~~~~a~~L~~~~g--~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~  124 (349)
                      +.+++.. .|+.+||.|+++++.++|..|.+ +|  +++||+|++++||++++.++++||+++|++..++||.....++.
T Consensus        34 ~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~-~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~  112 (537)
T KOG1176|consen   34 TSLVYQDSDGRELTYSELHDRCRRLASALSE-LGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIA  112 (537)
T ss_pred             ceEEEecCCCcEEcHHHHHHHHHHHHHHHHh-cCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHH
Confidence            6777653 26999999999999999999997 65  89999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCeEEEEcCccccccccc----CcceEEeCCC----CccccccccC--CCCCCCCccccccccCCCCcEEEEec
Q 045351          125 RQIHLSKPVIAFATHDTAHKIPQL----KYGTVLLDSP----EFEPLSATDS--LDYYDDDEERVRVSVSLSDPAAILYS  194 (349)
Q Consensus       125 ~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~T  194 (349)
                      +.++.++++++|++.+..+++.+.    ...++++...    ...+......  ..+..............+|++.|+||
T Consensus       113 ~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~il~S  192 (537)
T KOG1176|consen  113 KQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDGIRPVSEDDTAAILYS  192 (537)
T ss_pred             HHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCcccccCCCCCeEEEecC
Confidence            999999999999999888776542    2555555543    1111111111  00000111111445677999999999


Q ss_pred             cCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHh-hhhcCCEEEEcCCCCHHHHHHHHHh
Q 045351          195 SGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLR-SLGMGESLVCMGKFDFGRMLKAVEE  273 (349)
Q Consensus       195 SGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~-~l~~G~~~v~~~~~~~~~~~~~i~~  273 (349)
                      |||||.||||++||+++..+.......+. +...++.++.+|++|.+|+...+. .+..|+++++...|++..+++.+++
T Consensus       193 SGTTg~PKgV~lsHr~~~~~~~~~~~~~~-~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~k  271 (537)
T KOG1176|consen  193 SGTTGLPKGVVLSHRNLIANTLSIKIGWE-LTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEK  271 (537)
T ss_pred             CCCCCCCceEEEecHHHHHHHHHhhhccc-CCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999887776666 677999999999999999977776 5555666666678899999999999


Q ss_pred             hcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCcc---cccccccCceee
Q 045351          274 FRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN---RQLCLEFGAPII  342 (349)
Q Consensus       274 ~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~---~~~~~~~G~~~i  342 (349)
                      |++|++.++|.++..|++.+ ...+++++++|.+.+||+++++++.+++.+++|...   -|++||.|+.+.
T Consensus       272 ykvt~~~~vP~~~~~l~~~p-~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~  342 (537)
T KOG1176|consen  272 YKVTHLFLVPPVLNMLAKSP-IVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLIT  342 (537)
T ss_pred             hCEEEEEcChHHHHHHhcCC-ccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCcee
Confidence            99999999999999999998 888899999999999999999999999999998332   245566664433

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.1e-42  Score=325.91  Aligned_cols=304  Identities=27%  Similarity=0.353  Sum_probs=247.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.+...+  ..+ |+++|+++.+.+.++||+||.++++++|+.|++ .|+++||+|+|+++|+++++++++||+++
T Consensus        11 ~~~~~~l~~~a--~~~-~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~~v~~gdrVail~~N~~e~~~~~~a~~~~   86 (534)
T COG0318          11 LTLASLLERAA--RRN-PDRPALIFLGRGGRLTYRELDRRANRLAAALQA-LGVKPGDRVAILLPNSPEFLIAFLAALRA   86 (534)
T ss_pred             ccHHHHHHHHH--HhC-CCceEEEEcCCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            78999999999  999 999999997323349999999999999999999 89999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccC----cc-eEEeC-CCC------ccccccccCCCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK----YG-TVLLD-SPE------FEPLSATDSLDYYDDD  175 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~----~~-~~~~~-~~~------~~~~~~~~~~~~~~~~  175 (349)
                      |++++|++|..+.+++.++++.++++.++++..+.+......    .. .+... ...      +.......      ..
T Consensus        87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  160 (534)
T COG0318          87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEG------PG  160 (534)
T ss_pred             CEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhcc------CC
Confidence            999999999999999999999999999999987333322211    11 11111 111      11111100      00


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccC-CCCCcEEEEecChhhHhhHH-HHHhhhhcC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAA-RSRPAVVLCTVPYFHSYGFT-CCLRSLGMG  253 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G  253 (349)
                      .........++++++|+|||||||.||||++||+|+..+.......+.. +.++|++++++|++|.+|+. .++..++.|
T Consensus       161 ~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G  240 (534)
T COG0318         161 PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGG  240 (534)
T ss_pred             cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcC
Confidence            1111112678999999999999999999999999999998887777663 57889999999999999995 455569999


Q ss_pred             CEEEEcC--CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcc-hheehccCCCCCHHHHHHHHHHcCCc-
Q 045351          254 ESLVCMG--KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS-IEVVASGGAHLTLSVIRKYLQLNRTV-  329 (349)
Q Consensus       254 ~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~-lr~i~~gG~~l~~~~~~~~~~~~~~~-  329 (349)
                      +++++.+  .|++..++..+.++++|++.++|+++..|+..+ .....++++ +|.+++||+++++++++++.++|+.. 
T Consensus       241 ~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~-~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~  319 (534)
T COG0318         241 GTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNP-EKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIA  319 (534)
T ss_pred             CEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCC-ccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCc
Confidence            9999997  699999999999999999999999999999987 666666665 99999999999999999999999743 


Q ss_pred             --ccccccccCceee
Q 045351          330 --NRQLCLEFGAPII  342 (349)
Q Consensus       330 --~~~~~~~~G~~~i  342 (349)
                        ..|++||....++
T Consensus       320 i~~~YG~TE~~~~~~  334 (534)
T COG0318         320 ILEGYGLTETSPVVT  334 (534)
T ss_pred             eEEeecccccCceee
Confidence              4455666644333

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-41  Score=325.29  Aligned_cols=294  Identities=19%  Similarity=0.233  Sum_probs=246.1

Q ss_pred             chhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcC
Q 045351           29 SVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLG  108 (349)
Q Consensus        29 tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G  108 (349)
                      ++.+++...+  +.+ |+++|++++  ++.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|
T Consensus        50 ~~~~~~~~~a--~~~-pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~~~~~~~la~~~~G  123 (549)
T PRK07788         50 PFAGLVAHAA--RRA-PDRAALIDE--RGTLTYAELDEQSNALARGLLA-LGVRAGDGVAVLARNHRGFVLALYAAGKVG  123 (549)
T ss_pred             hHHHHHHHHH--HHC-CCceEEEEC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence            7899999999  999 999999987  7899999999999999999998 999999999999999999999999999999


Q ss_pred             CeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----CcceEEeCCCC----------ccccccccCCCCCC
Q 045351          109 VVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KYGTVLLDSPE----------FEPLSATDSLDYYD  173 (349)
Q Consensus       109 ~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~----------~~~~~~~~~~~~~~  173 (349)
                      ++++|+++..+.+++.++++.+++++++++++....+...     ....+......          +.++...       
T Consensus       124 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  196 (549)
T PRK07788        124 ARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAG-------  196 (549)
T ss_pred             CEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcC-------
Confidence            9999999999999999999999999999998765544321     11121111100          1111100       


Q ss_pred             CCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcC
Q 045351          174 DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMG  253 (349)
Q Consensus       174 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G  253 (349)
                        ..........++.++++|||||||.||+|.++|+++...+......++ +..+++++...|++|.+|+...+.++..|
T Consensus       197 --~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~g~~~~~~~l~~G  273 (549)
T PRK07788        197 --SSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVP-FRAGETTLLPAPMFHATGWAHLTLAMALG  273 (549)
T ss_pred             --CCCCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCC-CCcCCeEEEccchHHHHHHHHHHHHHHhC
Confidence              001111234567899999999999999999999999998887777777 68899999999999999998788899999


Q ss_pred             CEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCC--CCCCCcchheehccCCCCCHHHHHHHHHHcCC--c
Q 045351          254 ESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM--DGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--V  329 (349)
Q Consensus       254 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~  329 (349)
                      +++++...+++..+++.++++++|++.++|.+++.|++.. ..  ...++++||.+++||+++++++++++.+.++.  .
T Consensus       274 ~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~  352 (549)
T PRK07788        274 STVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLG-PEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLY  352 (549)
T ss_pred             CEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCc-ccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccce
Confidence            9999998899999999999999999999999999999875 43  56678999999999999999999999998853  3


Q ss_pred             ccccccccCc
Q 045351          330 NRQLCLEFGA  339 (349)
Q Consensus       330 ~~~~~~~~G~  339 (349)
                      +.|+.+|.|.
T Consensus       353 ~~YG~TE~~~  362 (549)
T PRK07788        353 NLYGSTEVAF  362 (549)
T ss_pred             eccCcchhch
Confidence            4455666553

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.5e-41  Score=329.59  Aligned_cols=306  Identities=18%  Similarity=0.195  Sum_probs=236.9

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCC---ceeeHHHHHHHHHHHHHHHhhhc---CCCCC-----------CEEEEE
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASR---HRILYPDLTLRIKTLAYSLKTKY---KLSKY-----------DVAFLL   90 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~---~~~Ty~~l~~~~~~~a~~L~~~~---g~~~g-----------d~V~i~   90 (349)
                      .|+.++|...+  +.+ |+++|+++...+   +++||+|+.+++.++|+.|.+ +   |+++|           |+|+|+
T Consensus        61 ~~l~~~l~~~~--~~~-p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~-~~~~Gv~~g~~~~~~~~g~~d~V~i~  136 (746)
T PTZ00342         61 KHIMKLLLEKY--KLN-NNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNT-YEGKGIPEKKYNEEQNNGKFKLLGLY  136 (746)
T ss_pred             chHHHHHHHHH--hhc-CCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHH-HhhcCCCcCccccccccccccEEEEE
Confidence            79999999999  999 999999874223   789999999999999999996 5   99999           999999


Q ss_pred             cCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----c-Cc-ceEEeCCCCcc---
Q 045351           91 SQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----L-KY-GTVLLDSPEFE---  161 (349)
Q Consensus        91 ~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~-~~-~~~~~~~~~~~---  161 (349)
                      ++|+++|+++.+||+++|++.+|+++.++.+++.++++.+++++++++.+..+.+..    . .. .+++++.....   
T Consensus       137 ~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  216 (746)
T PTZ00342        137 GSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEI  216 (746)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccc
Confidence            999999999999999999999999999999999999999999999998765544332    1 11 24444431100   


Q ss_pred             ----------------c-------------------------------------cccccCC------CCCC----CCccc
Q 045351          162 ----------------P-------------------------------------LSATDSL------DYYD----DDEER  178 (349)
Q Consensus       162 ----------------~-------------------------------------~~~~~~~------~~~~----~~~~~  178 (349)
                                      .                                     +......      .+.+    .....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  296 (746)
T PTZ00342        217 NINKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNY  296 (746)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCC
Confidence                            0                                     0000000      0000    00000


Q ss_pred             cccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc-CCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEE
Q 045351          179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA-ARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLV  257 (349)
Q Consensus       179 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v  257 (349)
                      ......+++++.|+|||||||.||||++||+|+++.+........ ...+.+++++.+|++|++++...+.+++.|++++
T Consensus       297 ~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~  376 (746)
T PTZ00342        297 KIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTIN  376 (746)
T ss_pred             CCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEE
Confidence            112456799999999999999999999999999998866543211 0235689999999999999977788999999999


Q ss_pred             EcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhc--------CCCCCC-------------------------------
Q 045351          258 CMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARD--------GGTMDG-------------------------------  298 (349)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~--------~~~~~~-------------------------------  298 (349)
                      +.+. ++..+++.|+++++|+++++|.++++|...        + ..++                               
T Consensus       377 ~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~k  454 (746)
T PTZ00342        377 IWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLP-PLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSK  454 (746)
T ss_pred             EeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence            9865 899999999999999999999999998752        1 1000                               


Q ss_pred             ---CCCcchheehccCCCCCHHHHHHHHHHcC--CcccccccccCc
Q 045351          299 ---YDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEFGA  339 (349)
Q Consensus       299 ---~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~G~  339 (349)
                         .-.++||.+++||+++++++.++|...++  ..+.|++||.++
T Consensus       455 ir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~  500 (746)
T PTZ00342        455 IKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTG  500 (746)
T ss_pred             HHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccc
Confidence               00268999999999999999999998874  334456677654

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4.4e-41  Score=323.20  Aligned_cols=304  Identities=20%  Similarity=0.234  Sum_probs=244.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.++|.+.+  .++ |+++|++++  ++.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus         7 ~~~~~~~~~~~--~~~-p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~v~~~n~~~~~~~~la~~~~   80 (563)
T PLN02860          7 AHICQCLTRLA--TLR-GNAVVTISG--NRRRTGHEFVDGVLSLAAGLLR-LGLRNGDVVAIAALNSDLYLEWLLAVACA   80 (563)
T ss_pred             hHHHHHHHHHH--Hhc-CCceEEecC--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHhhc
Confidence            68999999999  999 999999986  7899999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc-----c-Ccc-eEEeCCCC------ccccccccCCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ-----L-KYG-TVLLDSPE------FEPLSATDSLDYYDD  174 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-----~-~~~-~~~~~~~~------~~~~~~~~~~~~~~~  174 (349)
                      |++++|+++..+.+++.++++.++++++++++........     . ... .+..+...      +.+.....+......
T Consensus        81 Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (563)
T PLN02860         81 GGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRAL  160 (563)
T ss_pred             cEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCcc
Confidence            9999999999999999999999999999998754221111     0 111 11222111      001110000000000


Q ss_pred             CccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCC
Q 045351          175 DEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGE  254 (349)
Q Consensus       175 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~  254 (349)
                      ..........++++++|+|||||||.||||+++|+++..+.......++ +.++++++...|++|.+|+...+.++..|+
T Consensus       161 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~  239 (563)
T PLN02860        161 GTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVG-YGEDDVYLHTAPLCHIGGLSSALAMLMVGA  239 (563)
T ss_pred             ccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcC-CCCCCEEEEecCchhhccHHHHHHHHHcCc
Confidence            0001112346789999999999999999999999999987776666666 688999999999999999988899999999


Q ss_pred             EEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCC--CCCCCcchheehccCCCCCHHHHHHHHHHcCCc---
Q 045351          255 SLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM--DGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---  329 (349)
Q Consensus       255 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---  329 (349)
                      ++++.+++++..+++.|+++++|++.++|.++..|.+.. ..  ....+++||.+++||+++++++.+++.+.|++.   
T Consensus       240 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~  318 (563)
T PLN02860        240 CHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLT-RKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLF  318 (563)
T ss_pred             eEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhh-hhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCcee
Confidence            999999999999999999999999999999999998764 22  234578999999999999999999999998643   


Q ss_pred             ccccccccCc
Q 045351          330 NRQLCLEFGA  339 (349)
Q Consensus       330 ~~~~~~~~G~  339 (349)
                      +.|+++|.|.
T Consensus       319 ~~YG~TE~~~  328 (563)
T PLN02860        319 SAYGMTEACS  328 (563)
T ss_pred             cCCCccccCc
Confidence            3355666653

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=2.6e-40  Score=317.59  Aligned_cols=322  Identities=30%  Similarity=0.448  Sum_probs=250.8

Q ss_pred             CCccccceeeccCCCCCCCCC-CCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCC
Q 045351            5 NGFCSETKIFHSLRPSIAFPP-ETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSK   83 (349)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~-~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~   83 (349)
                      ..++++++.+.++.+..++|. ++.++.+.+....   .+ |+++|+++...+..+||+||.++++++|+.|.++.|+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~-~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~   91 (560)
T PLN02574         16 FWYSPETGIYSSKHPPVPLPSDPNLDAVSFIFSHH---NH-NGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQ   91 (560)
T ss_pred             cccCcCCeeecCCCCCCCCCCCCCCCHHHHHhcCc---cc-CCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Confidence            456667777777666555544 2255555555543   46 899999987556689999999999999999995479999


Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCC-----
Q 045351           84 YDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSP-----  158 (349)
Q Consensus        84 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----  158 (349)
                      ||+|+++++|+.++++++|||+++|++++|++|..+.+++.++++.+++++++++.+....+......++.++..     
T Consensus        92 gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (560)
T PLN02574         92 GDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDS  171 (560)
T ss_pred             CCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCccccccc
Confidence            999999999999999999999999999999999999999999999999999999877655544333333332210     


Q ss_pred             ------CccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc----cccCCCCC
Q 045351          159 ------EFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA----VRAARSRP  228 (349)
Q Consensus       159 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~  228 (349)
                            .+..+...       ...........++++++++|||||||.||||++||+++...+..+..    .+.....+
T Consensus       172 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~  244 (560)
T PLN02574        172 KRIEFPKFYELIKE-------DFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSD  244 (560)
T ss_pred             CccCcccHHHHhhc-------CCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCC
Confidence                  00000100       01111122345789999999999999999999999999987765432    22212356


Q ss_pred             cEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCC-CCCCCcchhe
Q 045351          229 AVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM-DGYDLSSIEV  306 (349)
Q Consensus       229 ~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~-~~~~l~~lr~  306 (349)
                      ++++..+|++|.+|+ ..++.++..|+++++.+.+++..+++.|+++++|++.++|.++..|.+.. .. ...+++++|.
T Consensus       245 ~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~lr~  323 (560)
T PLN02574        245 NVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKA-KGVCGEVLKSLKQ  323 (560)
T ss_pred             cEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCc-cccccCccccceE
Confidence            889999999999999 56678888999999999999999999999999999999999999999875 32 4567889999


Q ss_pred             ehccCCCCCHHHHHHHHHHcCCc---ccccccccC
Q 045351          307 VASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       307 i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G  338 (349)
                      +++||+++++++++++.+.+++.   +.|+++|.|
T Consensus       324 ~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~  358 (560)
T PLN02574        324 VSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTEST  358 (560)
T ss_pred             EEEecccCCHHHHHHHHHHCCCCcEEecccccccC
Confidence            99999999999999999998643   234455544

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=2.2e-40  Score=316.76  Aligned_cols=313  Identities=30%  Similarity=0.435  Sum_probs=256.9

Q ss_pred             eeeccCCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEc
Q 045351           12 KIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLS   91 (349)
Q Consensus        12 ~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~   91 (349)
                      ..+.+..+....+. ..|+.+++.+++  ..+ |+++|+++..+++++||.||.++++++|+.|.+ .|+++||+|++++
T Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~l~~~~--~~~-~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~   82 (537)
T PLN02246          8 FIFRSKLPDIYIPN-HLPLHDYCFERL--SEF-SDRPCLIDGATGRVYTYADVELLSRRVAAGLHK-LGIRQGDVVMLLL   82 (537)
T ss_pred             eEecCCCCCCCCCC-CCcHHHHHHHHH--HhC-CCCeEEEecCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEC
Confidence            44556666666554 479999999999  889 999999986556899999999999999999998 9999999999999


Q ss_pred             CCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc----CcceEEeCCCCc-----cc
Q 045351           92 QNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL----KYGTVLLDSPEF-----EP  162 (349)
Q Consensus        92 ~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~-----~~  162 (349)
                      +|+++++++++||+++|++++|+++..+.+++..+++.++++++++++...+.+...    ...++.++....     .+
T Consensus        83 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (537)
T PLN02246         83 PNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSE  162 (537)
T ss_pred             CCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHHH
Confidence            999999999999999999999999999999999999999999999988765544321    223444432110     01


Q ss_pred             cccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc----cccCCCCCcEEEEecChh
Q 045351          163 LSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA----VRAARSRPAVVLCTVPYF  238 (349)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~l~~~p~~  238 (349)
                      ....       ...........++++++++|||||||.||||+++|+++...+.....    .+. +..++++++..|++
T Consensus       163 ~~~~-------~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~-~~~~d~~l~~~pl~  234 (537)
T PLN02246        163 LTQA-------DENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-FHSDDVILCVLPMF  234 (537)
T ss_pred             HhcC-------CCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccC-CCCCcEEEEeechH
Confidence            1100       01111122346789999999999999999999999999987765433    344 68899999999999


Q ss_pred             hHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHH
Q 045351          239 HSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLS  317 (349)
Q Consensus       239 ~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~  317 (349)
                      |.+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|.++..|.+.. .....+++++|.+++||++++++
T Consensus       235 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~~~lr~~~~gg~~l~~~  313 (537)
T PLN02246        235 HIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSP-VVEKYDLSSIRMVLSGAAPLGKE  313 (537)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCc-cccccCccceeEEEEecCcCCHH
Confidence            99998 55778999999999999999999999999999999999999999999876 55566788999999999999999


Q ss_pred             HHHHHHHHcCCc---ccccccccC
Q 045351          318 VIRKYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       318 ~~~~~~~~~~~~---~~~~~~~~G  338 (349)
                      +.+.+.+.+++.   +.|+.+|.|
T Consensus       314 ~~~~~~~~~~~~~~~~~YG~tE~~  337 (537)
T PLN02246        314 LEDAFRAKLPNAVLGQGYGMTEAG  337 (537)
T ss_pred             HHHHHHHHcCCCeEeccccccccC
Confidence            999999999654   334556654

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=3.4e-40  Score=321.83  Aligned_cols=309  Identities=19%  Similarity=0.203  Sum_probs=236.0

Q ss_pred             cchhh-hhhcccCCC-CCCCCCeEEEeCC----CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHH
Q 045351           28 TSVTS-YVFSLLESH-APPPDTTALIDTA----SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLY  101 (349)
Q Consensus        28 ~tl~~-~l~~~~~~~-~~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~  101 (349)
                      .|+.. +|+..+  . .+ |+++|+++..    .++.+||+||.+++.++|+.|++ .|+++||+|+++++|++++++++
T Consensus        87 ~N~~~~~l~~~~--~~~~-~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrV~i~~pn~~e~v~a~  162 (666)
T PLN02654         87 TNICYNCLDRNV--EAGN-GDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKD-VGVKKGDAVVIYLPMLMELPIAM  162 (666)
T ss_pred             eeHHHHHHHHhh--ccCC-CCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHH
Confidence            55644 454454  4 47 9999998742    23789999999999999999998 99999999999999999999999


Q ss_pred             HHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc------------------Ccc-eEEeCCCCcc-
Q 045351          102 LSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL------------------KYG-TVLLDSPEFE-  161 (349)
Q Consensus       102 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------------------~~~-~~~~~~~~~~-  161 (349)
                      |||+++|++++|+++..+.+++..+++.++++++|+++......+..                  ... ++..+..... 
T Consensus       163 lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (666)
T PLN02654        163 LACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMK  242 (666)
T ss_pred             HHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccc
Confidence            99999999999999999999999999999999999987643221110                  000 1111110000 


Q ss_pred             --cc-cccc-CCCC----CCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHH-hhhhccccCCCCCcEEE
Q 045351          162 --PL-SATD-SLDY----YDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAV-AGGHAVRAARSRPAVVL  232 (349)
Q Consensus       162 --~~-~~~~-~~~~----~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~-~~~~~~~~~~~~~~~~l  232 (349)
                        .. .... +..+    .............++++++|+|||||||.||||+++|++++... ......++ +.++|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~-~~~~d~~~  321 (666)
T PLN02654        243 REDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFD-YKPTDVYW  321 (666)
T ss_pred             ccccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcC-CCCCcEEE
Confidence              00 0000 0000    00000011123467999999999999999999999999986543 34445555 78899999


Q ss_pred             EecChhhHhhH-HHHHhhhhcCCEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCC--CCCCCCcchh
Q 045351          233 CTVPYFHSYGF-TCCLRSLGMGESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSIE  305 (349)
Q Consensus       233 ~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~~~~l~~lr  305 (349)
                      +..|+.|+.|. ..++.+|+.|+++++.++    +++..+++.|+++++|++.++|++++.|.+.. .  ....++++||
T Consensus       322 ~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~l~~Lr  400 (666)
T PLN02654        322 CTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDG-DEYVTRHSRKSLR  400 (666)
T ss_pred             EcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhC-ccccccCChhhee
Confidence            99999999998 667899999999999863    48999999999999999999999999999875 3  3456789999


Q ss_pred             eehccCCCCCHHHHHHHHHHcCC-----cccccccccCceee
Q 045351          306 VVASGGAHLTLSVIRKYLQLNRT-----VNRQLCLEFGAPII  342 (349)
Q Consensus       306 ~i~~gG~~l~~~~~~~~~~~~~~-----~~~~~~~~~G~~~i  342 (349)
                      .+++||+++++++++++.+.++.     .+.|+.+|.|+..+
T Consensus       401 ~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~  442 (666)
T PLN02654        401 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI  442 (666)
T ss_pred             EEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeee
Confidence            99999999999999999999863     44566677665443

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.2e-40  Score=324.55  Aligned_cols=299  Identities=17%  Similarity=0.180  Sum_probs=230.8

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeC-----CCC--ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDT-----ASR--HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~-----~~~--~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      .|+.++|...+  +++ |+++|+.+.     ..+  +++||+||.++++++|+.|.+ .|+++||+|+|+++|+++|+++
T Consensus        43 ~t~~~~l~~~~--~~~-p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e~~~~  118 (660)
T PLN02861         43 DSPWQFFSDAV--KKY-PNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS-RGVNPGDRCGIYGSNCPEWIIA  118 (660)
T ss_pred             CCHHHHHHHHH--HhC-CCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHH
Confidence            68999999999  999 999999641     112  579999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----c--Ccc-eEEeCCCC--------------
Q 045351          101 YLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----L--KYG-TVLLDSPE--------------  159 (349)
Q Consensus       101 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~--~~~-~~~~~~~~--------------  159 (349)
                      ++||+++|++++|+++..+.+++.++++.++++++|+++...+.+..    .  ..+ ++..+...              
T Consensus       119 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  198 (660)
T PLN02861        119 MEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSC  198 (660)
T ss_pred             HHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEE
Confidence            99999999999999999999999999999999999998655433211    1  122 33333211              


Q ss_pred             --ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc----CCCCCcEEEE
Q 045351          160 --FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA----ARSRPAVVLC  233 (349)
Q Consensus       160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----~~~~~~~~l~  233 (349)
                        +.++...       ...........++++++|+|||||||.||||++||++++..+......+.    .+..+|++++
T Consensus       199 ~~~~~~~~~-------~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (660)
T PLN02861        199 FSWEEFSLM-------GSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFS  271 (660)
T ss_pred             EEHHHHHHh-------CcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEE
Confidence              0011100       00001112346799999999999999999999999999988766544332    1367899999


Q ss_pred             ecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcC--------------------
Q 045351          234 TVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG--------------------  293 (349)
Q Consensus       234 ~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~--------------------  293 (349)
                      .+|++|.+++...+.+++.|+++++.+ +++..+++.|+++++|+++++|.+++.|.+.-                    
T Consensus       272 ~lPl~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~  350 (660)
T PLN02861        272 YLPLAHVYDQVIETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYN  350 (660)
T ss_pred             ECcHHHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            999999999865667899999998884 68999999999999999999999999886410                    


Q ss_pred             --------C--------CCCCC-------CC-cchheehccCCCCCHHHHHHHHHHcCC---cccccccccCc
Q 045351          294 --------G--------TMDGY-------DL-SSIEVVASGGAHLTLSVIRKYLQLNRT---VNRQLCLEFGA  339 (349)
Q Consensus       294 --------~--------~~~~~-------~l-~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~~~~~~~~G~  339 (349)
                              +        .....       .+ +++|.+++||+++++++. +|.+.++.   .+.|++||.++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~  422 (660)
T PLN02861        351 YKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTESCG  422 (660)
T ss_pred             HHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhhhhh
Confidence                    0        00000       11 578999999999999975 56666643   34566777654

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.9e-40  Score=316.90  Aligned_cols=301  Identities=18%  Similarity=0.185  Sum_probs=242.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|.+.+  +++ |+++|+++.. .+++||+||.++++++|+.|.+    .+||+|+++++|+++++++++||+++
T Consensus        19 ~~~~~~~~~~~--~~~-p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~----~~gd~Val~~~n~~e~~~~~lA~~~~   90 (539)
T PRK06334         19 KTVLESFLKLC--SEM-TTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK----YPDQHIGIMMPASAGAYIAYFATLLS   90 (539)
T ss_pred             CcHHHHHHHHH--HhC-CCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh----ccCCeEEEEcCCchHHHHHHHHHHhc
Confidence            58999999999  999 9999998862 4789999999999999999997    38999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-------CcceEEeCCCC----ccccccccC-CCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-------KYGTVLLDSPE----FEPLSATDS-LDYYDDD  175 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~~-~~~~~~~  175 (349)
                      |++++|+++..+.+++.++++.+++++++++.+....+...       ...++..+...    +.+...... .......
T Consensus        91 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (539)
T PRK06334         91 GKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFEW  170 (539)
T ss_pred             CCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCchh
Confidence            99999999999999999999999999999987654443321       11233322110    000000000 0000000


Q ss_pred             --ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhc
Q 045351          176 --EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGM  252 (349)
Q Consensus       176 --~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~  252 (349)
                        .........++++++|+|||||||.||||++||+++..........++ +..+|++++.+|++|.+|+ ..++.++..
T Consensus       171 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~g~~~~~~~~l~~  249 (539)
T PRK06334        171 LMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFS-PKEDDVMMSFLPPFHAYGFNSCTLFPLLS  249 (539)
T ss_pred             hhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcC-CCCCceEEEecchHhhhhhHHHHHHHHHc
Confidence              000112456789999999999999999999999999988877776676 6889999999999999999 567889999


Q ss_pred             CCEEEEcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc--
Q 045351          253 GESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV--  329 (349)
Q Consensus       253 G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~--  329 (349)
                      |+++++.. .+++..+++.|+++++|++.++|.+++.|++.. .....++++||.+++||+++++++.+++.+.+++.  
T Consensus       250 G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i  328 (539)
T PRK06334        250 GVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTA-KKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQL  328 (539)
T ss_pred             CCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhh-hhcccccccccEEEECCccCCHHHHHHHHHHCCCCeE
Confidence            99999885 589999999999999999999999999999876 55566789999999999999999999999998643  


Q ss_pred             -ccccccccC
Q 045351          330 -NRQLCLEFG  338 (349)
Q Consensus       330 -~~~~~~~~G  338 (349)
                       +.|+.||.|
T Consensus       329 ~~~YG~TE~~  338 (539)
T PRK06334        329 RQGYGTTECS  338 (539)
T ss_pred             EecccccccC
Confidence             345566654

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=6.8e-40  Score=318.50  Aligned_cols=311  Identities=17%  Similarity=0.185  Sum_probs=238.2

Q ss_pred             cch-hhhhhcccCCCCCCCCCeEEEeCC----CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHH
Q 045351           28 TSV-TSYVFSLLESHAPPPDTTALIDTA----SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYL  102 (349)
Q Consensus        28 ~tl-~~~l~~~~~~~~~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~l  102 (349)
                      .|+ .+.+...+  ... |+++|+++..    .++.+||+||.++++++|+.|++ .|+++||+|+++++|++++++++|
T Consensus        51 ~n~~~~~l~~~~--~~~-p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~n~~e~v~~~l  126 (628)
T TIGR02316        51 TNLCHNALDRHL--DER-GEQLALVTVSSETGQERTLTYRQLHREVNVFASALRA-LGVGRGDRVLIYMPMIAEAVFAML  126 (628)
T ss_pred             eeHHHHHHHHHh--CcC-CCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence            444 45666677  778 9999999731    24789999999999999999998 999999999999999999999999


Q ss_pred             HHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc---------c----c---ccCcceEEeCCCCcc-cccc
Q 045351          103 SLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK---------I----P---QLKYGTVLLDSPEFE-PLSA  165 (349)
Q Consensus       103 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~---------~----~---~~~~~~~~~~~~~~~-~~~~  165 (349)
                      ||+++|++++|+++..+.+++.++++.++++++|+++.....         +    .   .....++.++..... ....
T Consensus       127 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~  206 (628)
T TIGR02316       127 ACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIP  206 (628)
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCccc
Confidence            999999999999999999999999999999999997643210         0    0   011223333321000 0000


Q ss_pred             ccCCCCC---CC--CccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHH-hhhhccccCCCCCcEEEEecChhh
Q 045351          166 TDSLDYY---DD--DEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAV-AGGHAVRAARSRPAVVLCTVPYFH  239 (349)
Q Consensus       166 ~~~~~~~---~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~-~~~~~~~~~~~~~~~~l~~~p~~~  239 (349)
                      ..+..+.   ..  ..........++++++|+|||||||.||||+++|.+++... ......++ +.++|++++..|+.|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~  285 (628)
T TIGR02316       207 GRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFG-IRAGQVMFSASDVGW  285 (628)
T ss_pred             CccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcC-CCCCcEEEEcCCCCe
Confidence            0000000   00  00011122467899999999999999999999999986443 33444455 688899999999999


Q ss_pred             HhhH-HHHHhhhhcCCEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCC--CCCCCCcchheehccCC
Q 045351          240 SYGF-TCCLRSLGMGESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSIEVVASGGA  312 (349)
Q Consensus       240 ~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~~~~l~~lr~i~~gG~  312 (349)
                      +.|+ ..++.+|+.|+++++.+.    +++..+++.|+++++|+++++|++++.|.+.. .  ....++++||.+++||+
T Consensus       286 ~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~l~~lr~~~~gGe  364 (628)
T TIGR02316       286 VVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQD-AAWLRKHDLSSLHWLFLAGE  364 (628)
T ss_pred             eehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcC-CcccccCCccceeEEEEecC
Confidence            9997 678899999999999863    48999999999999999999999999998764 2  34567899999999999


Q ss_pred             CCCHHHHHHHHHHcC--CcccccccccCceeeec
Q 045351          313 HLTLSVIRKYLQLNR--TVNRQLCLEFGAPIISL  344 (349)
Q Consensus       313 ~l~~~~~~~~~~~~~--~~~~~~~~~~G~~~i~~  344 (349)
                      ++++++++++.+.++  ..+.|+.||.|..+++.
T Consensus       365 ~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~  398 (628)
T TIGR02316       365 PLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAI  398 (628)
T ss_pred             CCCHHHHHHHHHHhCCCEEecccccccCceeecC
Confidence            999999999998885  34456678877555443

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4.9e-40  Score=320.64  Aligned_cols=300  Identities=16%  Similarity=0.132  Sum_probs=238.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEe---CCC----CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALID---TAS----RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~---~~~----~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      .|+.+.+...+  +.+ |+++|+..   .+.    .+.+||+||.++++++|+.|.+ .|+++||+|+|+++|+++|+++
T Consensus        44 ~tl~~~l~~~a--~~~-p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e~~~~  119 (651)
T PLN02736         44 GTLHDNFVYAV--ETF-RDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQ-HGIPKGACVGLYFINRPEWLIV  119 (651)
T ss_pred             CCHHHHHHHHH--HhC-CCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHH
Confidence            68999999999  999 99999942   111    2569999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----c-Ccc-eEEeCCCC---------------
Q 045351          101 YLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----L-KYG-TVLLDSPE---------------  159 (349)
Q Consensus       101 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~-~~~-~~~~~~~~---------------  159 (349)
                      ++||+++|++++|+++..+.+++.++++.++++++|++.+..+.+..    . ..+ ++..+..+               
T Consensus       120 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  199 (651)
T PLN02736        120 DHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIV  199 (651)
T ss_pred             HHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEE
Confidence            99999999999999999999999999999999999998765443221    1 112 22222110               


Q ss_pred             -ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChh
Q 045351          160 -FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYF  238 (349)
Q Consensus       160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~  238 (349)
                       +.++....      ...........++++++|+|||||||.||||++||+++...+......++ +.++|++++.+|++
T Consensus       200 ~~~~~~~~~------~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~-~~~~d~~l~~lPl~  272 (651)
T PLN02736        200 TYSKLLAQG------RSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK-FYPSDVHISYLPLA  272 (651)
T ss_pred             EHHHHHHhc------ccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccC-CCCCCEEEEeCCHH
Confidence             01111100      00001122356799999999999999999999999999999888877777 68899999999999


Q ss_pred             hHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCC------------------------
Q 045351          239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGG------------------------  294 (349)
Q Consensus       239 ~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~------------------------  294 (349)
                      |.+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|.+++.|.+...                        
T Consensus       273 h~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (651)
T PLN02736        273 HIYERVNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQA  351 (651)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            99999888899999999988864 88999999999999999999999988765310                        


Q ss_pred             ----CCCC------------CCC-cchheehccCCCCCHHHHHHHHHHcC--CcccccccccCc
Q 045351          295 ----TMDG------------YDL-SSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEFGA  339 (349)
Q Consensus       295 ----~~~~------------~~l-~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~G~  339 (349)
                          ....            ..+ +++|.+++||+++++++.+++.+.++  ..+.|++||.++
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~  415 (651)
T PLN02736        352 LENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSC  415 (651)
T ss_pred             HHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhch
Confidence                0000            011 48999999999999999999998875  234456666654

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=6.6e-40  Score=317.81  Aligned_cols=303  Identities=20%  Similarity=0.226  Sum_probs=235.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC---CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA---SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL  104 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~---~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~  104 (349)
                      .|+.+.|...+  ..+ |+++|+++.+   ..+++||+||.++++++|++|.+ .|+++||+|+++++|+++|+++++||
T Consensus        39 ~~l~~~l~~~a--~~~-p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~Gv~~gd~Vai~~~n~~e~~~~~lA~  114 (614)
T PRK08180         39 RRLTDRLVHWA--QEA-PDRVFLAERGADGGWRRLTYAEALERVRAIAQALLD-RGLSAERPLMILSGNSIEHALLALAA  114 (614)
T ss_pred             ccHHHHHHHHH--HHC-CCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHHHH
Confidence            68999999999  889 9999998742   13789999999999999999998 99999999999999999999999999


Q ss_pred             HhcCCeEecCCCCCC-----HHHHHHHHhhcCCeEEEEcCcc--cccccc---cCcceEEeCCC-------Ccccccccc
Q 045351          105 FSLGVVVSPCNPSCT-----IPEILRQIHLSKPVIAFATHDT--AHKIPQ---LKYGTVLLDSP-------EFEPLSATD  167 (349)
Q Consensus       105 ~~~G~~~v~i~~~~~-----~~~l~~~l~~~~~~~i~~~~~~--~~~~~~---~~~~~~~~~~~-------~~~~~~~~~  167 (349)
                      +++|++++|+++.++     .+++.++++.++++++++++..  ...+..   ....++..+..       .+.++....
T Consensus       115 ~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (614)
T PRK08180        115 MYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALLATP  194 (614)
T ss_pred             HHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHHHhccc
Confidence            999999999999988     7999999999999999997531  111111   12223332211       111111110


Q ss_pred             CCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCC--CCcEEEEecChhhHhhH-H
Q 045351          168 SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS--RPAVVLCTVPYFHSYGF-T  244 (349)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~g~-~  244 (349)
                      ..    ...........++++++|+|||||||.||||++||+++...+......+. ..  .++++++.+|++|.+|+ .
T Consensus       195 ~~----~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~~~l~~lPl~h~~g~~~  269 (614)
T PRK08180        195 PT----AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP-FLAEEPPVLVDWLPWNHTFGGNH  269 (614)
T ss_pred             cc----cchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhcc-ccCCCCcEEEEecchHHHhhHHH
Confidence            00    00001112346789999999999999999999999999988877666655 32  56899999999999998 6


Q ss_pred             HHHhhhhcCCEEEEcC-CCCH---HHHHHHHHhhcccEEEechHHHHHHHhcCC---CCCCCCCcchheehccCCCCCHH
Q 045351          245 CCLRSLGMGESLVCMG-KFDF---GRMLKAVEEFRVSHVVLAPPVVLKMARDGG---TMDGYDLSSIEVVASGGAHLTLS  317 (349)
Q Consensus       245 ~~~~~l~~G~~~v~~~-~~~~---~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~---~~~~~~l~~lr~i~~gG~~l~~~  317 (349)
                      .++.+++.|+++++.+ .+++   ..+++.++++++|+++++|.+++.|++...   .....++++||.+++||++++++
T Consensus       270 ~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~  349 (614)
T PRK08180        270 NLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQD  349 (614)
T ss_pred             HHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHH
Confidence            7778999999999976 3444   467889999999999999999999987430   22344578999999999999999


Q ss_pred             HHHHHHHHc----C----CcccccccccCc
Q 045351          318 VIRKYLQLN----R----TVNRQLCLEFGA  339 (349)
Q Consensus       318 ~~~~~~~~~----~----~~~~~~~~~~G~  339 (349)
                      +.+++.+.+    +    ..+.|++||.|.
T Consensus       350 ~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~  379 (614)
T PRK08180        350 VWDRLDRVAEATCGERIRMMTGLGMTETAP  379 (614)
T ss_pred             HHHHHHHHHHhhcCCCceeeeeecccccCC
Confidence            999998752    2    234456677653

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4.9e-40  Score=320.29  Aligned_cols=298  Identities=16%  Similarity=0.146  Sum_probs=229.5

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeC-----CCC--ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDT-----ASR--HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~-----~~~--~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      .|+.+++...+  +.+ |+++|+.+.     ..+  +++||+||.++++++|+.|.+ .|+++||+|+|+++|+++|+++
T Consensus        45 ~t~~~~l~~~a--~~~-pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~n~~e~~~~  120 (666)
T PLN02614         45 DSCWDVFRMSV--EKY-PNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS-VGVKDEAKCGIYGANSPEWIIS  120 (666)
T ss_pred             CcHHHHHHHHH--HhC-CCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHH
Confidence            58999999999  899 999999842     112  358999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc-c-----Cc-ceEEeCCCC--------------
Q 045351          101 YLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ-L-----KY-GTVLLDSPE--------------  159 (349)
Q Consensus       101 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-~-----~~-~~~~~~~~~--------------  159 (349)
                      ++||+++|++++|+++..+.+++.++++.++++++|++++....+.. .     .. .++.++...              
T Consensus       121 ~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~  200 (666)
T PLN02614        121 MEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVI  200 (666)
T ss_pred             HHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEE
Confidence            99999999999999999999999999999999999998754333211 0     01 233333210              


Q ss_pred             --ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccc-----cCCCCCcEEE
Q 045351          160 --FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVR-----AARSRPAVVL  232 (349)
Q Consensus       160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~l  232 (349)
                        +.++.....      ..........++|+++|+|||||||.||||++||+++...+......+     . +..+|+++
T Consensus       201 ~~~~~~~~~~~------~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~-~~~~d~~l  273 (666)
T PLN02614        201 YAWDEFLKLGE------GKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAA-LTVKDVYL  273 (666)
T ss_pred             EEHHHHHhhcc------cCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccC-CCCCcEEE
Confidence              011110000      000111234678999999999999999999999999998876654332     3 57889999


Q ss_pred             EecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCC----------------
Q 045351          233 CTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM----------------  296 (349)
Q Consensus       233 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~----------------  296 (349)
                      +.+|++|.+++......++.|+++++.+ +++..+++.|+++++|+++++|.+++.|.... ..                
T Consensus       274 ~~lPl~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~-~~~~~~~~~~~~~~~~~a  351 (666)
T PLN02614        274 SYLPLAHIFDRVIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGL-QKKLSDGGFLKKFVFDSA  351 (666)
T ss_pred             EeccHHHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHH-HHHHhccCHHHHHHHHHH
Confidence            9999999999866667788999998875 69999999999999999999999999886421 00                


Q ss_pred             ---------------CCC-------------CC-cchheehccCCCCCHHHHHHHHHHcCC---cccccccccCc
Q 045351          297 ---------------DGY-------------DL-SSIEVVASGGAHLTLSVIRKYLQLNRT---VNRQLCLEFGA  339 (349)
Q Consensus       297 ---------------~~~-------------~l-~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~~~~~~~~G~  339 (349)
                                     ...             .+ ++||.+++||+++++.+ ++|.+.+++   .+.|++||.++
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~  425 (666)
T PLN02614        352 FSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCA  425 (666)
T ss_pred             HHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhh
Confidence                           000             01 68999999999999875 667777643   34456666543

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-39  Score=319.49  Aligned_cols=307  Identities=20%  Similarity=0.176  Sum_probs=237.5

Q ss_pred             cchhhhhh-cccCCCCCCCCCeEEEeCCCC------ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHH
Q 045351           28 TSVTSYVF-SLLESHAPPPDTTALIDTASR------HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        28 ~tl~~~l~-~~~~~~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      .|+.+.+. ..+  ... |+++|+++.+++      +.+||+||.+++.++|+.|++ .|+++||+|+++++|+++++++
T Consensus       174 ln~~~~~l~~~~--~~~-pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrVai~~pn~~e~via  249 (728)
T PLN03052        174 LNVAECCLTPKP--SKT-DDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDA-LGFEKGDAIAIDMPMNVHAVII  249 (728)
T ss_pred             eEHHHHHHHHHh--ccC-CCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHH
Confidence            56666444 444  557 999999986432      589999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccc----------ccCcceEEeCCC------------
Q 045351          101 YLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIP----------QLKYGTVLLDSP------------  158 (349)
Q Consensus       101 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~------------  158 (349)
                      +|||+++|++++|+++..+.+++.++++.++++++|+++.....-+          .....++++...            
T Consensus       250 ~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~  329 (728)
T PLN03052        250 YLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGD  329 (728)
T ss_pred             HHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccCC
Confidence            9999999999999999999999999999999999999875321100          001112222211            


Q ss_pred             -CccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecCh
Q 045351          159 -EFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPY  237 (349)
Q Consensus       159 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~  237 (349)
                       .+.++...... . ............++++++|+|||||||.||||+++|.+++.........++ +.++|++++..|+
T Consensus       330 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~-l~~~d~~~~~~~l  406 (728)
T PLN03052        330 MSWDDFLARANG-L-RRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLD-IRKGDIVCWPTNL  406 (728)
T ss_pred             ccHHHHHhcccc-c-cccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcC-CCCCcEEEECCCc
Confidence             01111110000 0 000000111235689999999999999999999999998776655444455 6889999999999


Q ss_pred             hhHhhHHHHHhhhhcCCEEEEcCC-CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCH
Q 045351          238 FHSYGFTCCLRSLGMGESLVCMGK-FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTL  316 (349)
Q Consensus       238 ~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~  316 (349)
                      .|+.+...++.+|+.|+++++.++ .++..+++.++++++|++.++|++++.|.+.. ...+.++++||.+++||+++++
T Consensus       407 ~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~-~~~~~dlssLr~i~s~Ge~l~~  485 (728)
T PLN03052        407 GWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN-CMAGLDWSSIRCFGSTGEASSV  485 (728)
T ss_pred             HHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC-CcccCChhheeEEEecCCCCCH
Confidence            999999888899999999999964 46678999999999999999999999998875 5567889999999999999999


Q ss_pred             HHHHHHHHHcC---CcccccccccCceee
Q 045351          317 SVIRKYLQLNR---TVNRQLCLEFGAPII  342 (349)
Q Consensus       317 ~~~~~~~~~~~---~~~~~~~~~~G~~~i  342 (349)
                      +...++.+.++   ..+.|+.||.|+.++
T Consensus       486 ~~~~~~~~~~~~~~i~~~yG~TE~~~~~~  514 (728)
T PLN03052        486 DDYLWLMSRAGYKPIIEYCGGTELGGGFV  514 (728)
T ss_pred             HHHHHHHHhcCCCCeEeeccChhhCcccc
Confidence            99888887663   445567777765444

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-39  Score=310.59  Aligned_cols=308  Identities=24%  Similarity=0.316  Sum_probs=249.9

Q ss_pred             CCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhc-CCCCCCEEEEEcCCCchHHHH
Q 045351           22 AFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKY-KLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        22 ~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~-g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      .+|.  .|+.+.|...+  +.+ |+++|+++.  ++.+||+||.+++.++|+.|.+ . |+++||+|+++++|+++++++
T Consensus         6 ~~~~--~tl~~~l~~~a--~~~-~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~-~~g~~~g~~V~i~~~~~~~~~~~   77 (546)
T PRK08314          6 TLPE--TSLFHNLEVSA--RRY-PDKTAIVFY--GRAISYRELLEEAERLAGYLQQ-ECGVRKGDRVLLYMQNSPQFVIA   77 (546)
T ss_pred             CCCC--CCHHHHHHHHH--HHc-CCCcceeec--CceecHHHHHHHHHHHHHHHHH-hhCCCCCCEEEEECCCChHHHHH
Confidence            4555  89999999999  899 999999987  7899999999999999999998 7 999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc----Ccc-eEEeCCCCc---------cccccc
Q 045351          101 YLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL----KYG-TVLLDSPEF---------EPLSAT  166 (349)
Q Consensus       101 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----~~~-~~~~~~~~~---------~~~~~~  166 (349)
                      ++||+++|++++|+++..+.+++.++++.+++++++++......+...    ... ++.....+.         ..+...
T Consensus        78 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (546)
T PRK08314         78 YYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRA  157 (546)
T ss_pred             HHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccc
Confidence            999999999999999999999999999999999999988765544321    111 111110000         000000


Q ss_pred             cC----------CCCC---CCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEE
Q 045351          167 DS----------LDYY---DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLC  233 (349)
Q Consensus       167 ~~----------~~~~---~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~  233 (349)
                      ..          ..+.   ............++++++|+|||||||.||+|.++|++++.++......+. +..+|++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~l~  236 (546)
T PRK08314        158 EPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSN-STPESVVLA  236 (546)
T ss_pred             ccccccccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhC-CCCCceEEE
Confidence            00          0000   000011122456789999999999999999999999999998888777766 689999999


Q ss_pred             ecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCC
Q 045351          234 TVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA  312 (349)
Q Consensus       234 ~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~  312 (349)
                      .+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|++.++|.++..+...+ .....+++++|.+++||+
T Consensus       237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~-~~~~~~~~~l~~~~~gG~  315 (546)
T PRK08314        237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASP-GLAERDLSSLRYIGGGGA  315 (546)
T ss_pred             EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCC-CccccCchhhheeeeccc
Confidence            9999999998 67789999999999999999999999999999999999999999998876 556667889999999999


Q ss_pred             CCCHHHHHHHHHHcCC--cccccccccCc
Q 045351          313 HLTLSVIRKYLQLNRT--VNRQLCLEFGA  339 (349)
Q Consensus       313 ~l~~~~~~~~~~~~~~--~~~~~~~~~G~  339 (349)
                      ++++++++++.+.++.  .+.|+.+|.|.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  344 (546)
T PRK08314        316 AMPEAVAERLKELTGLDYVEGYGLTETMA  344 (546)
T ss_pred             cCCHHHHHHHHHHcCCcEEeccccccccc
Confidence            9999999999998842  23345566543

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=4e-39  Score=308.69  Aligned_cols=306  Identities=20%  Similarity=0.235  Sum_probs=247.9

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCC----CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTAS----RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS  103 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA  103 (349)
                      .|+.+.|...+  +.+ |+++|+++.+.    .+.+||+||.++++++|++|.+ .|+++||+|+++++|++++++++||
T Consensus        24 ~~l~~~l~~~a--~~~-p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~Val~~~n~~e~~~~~la   99 (547)
T PRK13295         24 RTINDDLDACV--ASC-PDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLAR-LGVGRGDVVSCQLPNWWEFTVLYLA   99 (547)
T ss_pred             CCHHHHHHHHH--HHC-CCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHHH
Confidence            68999999999  889 99999998632    2899999999999999999998 9999999999999999999999999


Q ss_pred             HHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc-----cccc----c-Cc-ceEEeCCCCc---cccccccCC
Q 045351          104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH-----KIPQ----L-KY-GTVLLDSPEF---EPLSATDSL  169 (349)
Q Consensus       104 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~----~-~~-~~~~~~~~~~---~~~~~~~~~  169 (349)
                      |+++|++++|+++..+.+++.++++.++++++++++....     .+..    . .. .++.++....   .++......
T Consensus       100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (547)
T PRK13295        100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPAW  179 (547)
T ss_pred             HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHHHHhhCCcc
Confidence            9999999999999999999999999999999999875411     1110    0 11 2333332211   111111000


Q ss_pred             CC-CCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHH
Q 045351          170 DY-YDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCL  247 (349)
Q Consensus       170 ~~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~  247 (349)
                      .. .............++++++++|||||||.||+|+++|+++...+......++ +.+++++++..|++|.+|+ ..++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~l~~~p~~h~~g~~~~~~  258 (547)
T PRK13295        180 EQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLG-LGADDVILMASPMAHQTGFMYGLM  258 (547)
T ss_pred             ccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhC-CCCCCeEEEecCchhhhhHHHHHH
Confidence            00 0001111122356789999999999999999999999999998888777777 6889999999999999988 6788


Q ss_pred             hhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC
Q 045351          248 RSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR  327 (349)
Q Consensus       248 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  327 (349)
                      .++..|+++++.+.+++..+++.++++++|++.++|.++..|.... .....++++||.+++||+++++++.+++.+.++
T Consensus       259 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~-~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~  337 (547)
T PRK13295        259 MPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAV-KESGRPVSSLRTFLCAGAPIPGALVERARAALG  337 (547)
T ss_pred             HHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc-cccCCCcccceEEEEecCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999876 556677899999999999999999999999883


Q ss_pred             --CcccccccccCc
Q 045351          328 --TVNRQLCLEFGA  339 (349)
Q Consensus       328 --~~~~~~~~~~G~  339 (349)
                        ..+.|+.||.|.
T Consensus       338 ~~~~~~YG~TE~~~  351 (547)
T PRK13295        338 AKIVSAWGMTENGA  351 (547)
T ss_pred             CCeEEeccCCCCCC
Confidence              334455666553

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=5.2e-39  Score=307.88  Aligned_cols=317  Identities=23%  Similarity=0.377  Sum_probs=252.7

Q ss_pred             eeeccCCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEc
Q 045351           12 KIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLS   91 (349)
Q Consensus        12 ~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~   91 (349)
                      ..+.++.+..+.+. ..|+.+++...+  ..+ |+++|+++..+++.+||.||.+++.++|+.|.+ .|+++||+|++++
T Consensus        13 ~~~~~~~~~~~~~~-~~~~~~~l~~~a--~~~-p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~   87 (546)
T PLN02330         13 HIFRSRYPSVPVPD-KLTLPDFVLQDA--ELY-ADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRS-LGLRKGQVVVVVL   87 (546)
T ss_pred             eeeccCCCCCCCCC-CCcHHHHHhhhh--hcC-CCccEEEecCCCCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEC
Confidence            44555666655444 478999999999  999 999999986557899999999999999999998 9999999999999


Q ss_pred             CCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCC------cccccc
Q 045351           92 QNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPE------FEPLSA  165 (349)
Q Consensus        92 ~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  165 (349)
                      +|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+......++.++...      +.++..
T Consensus        88 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  167 (546)
T PLN02330         88 PNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLE  167 (546)
T ss_pred             CCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCCCCCcccHHHHHh
Confidence            99999999999999999999999999999999999999999999999887766655444554444221      222221


Q ss_pred             ccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc-CCCCCcEEEEecChhhHhhH-
Q 045351          166 TDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA-ARSRPAVVLCTVPYFHSYGF-  243 (349)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~-  243 (349)
                      ....    ...........++++++++|||||||.||||.++|+++...+........ .....++.+...|++|.+|+ 
T Consensus       168 ~~~~----~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~  243 (546)
T PLN02330        168 AADR----AGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGIT  243 (546)
T ss_pred             hccc----cCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHH
Confidence            1100    00011122345689999999999999999999999999876654322221 12345689999999999998 


Q ss_pred             HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCc--chheehccCCCCCHHHHHH
Q 045351          244 TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLS--SIEVVASGGAHLTLSVIRK  321 (349)
Q Consensus       244 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~--~lr~i~~gG~~l~~~~~~~  321 (349)
                      ..++.++..|+++++.+.+++..+++.++++++|++.++|.++..+...+ .....+++  ++|.+++||++++++++++
T Consensus       244 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~~~~l~~i~~~g~~l~~~~~~~  322 (546)
T PLN02330        244 GICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNP-IVEEFDLSKLKLQAIMTAAAPLAPELLTA  322 (546)
T ss_pred             HHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCc-cccccccchheeeeEEEcCCcCCHHHHHH
Confidence            56778899999999999999999999999999999999999999998875 44445554  4789999999999999999


Q ss_pred             HHHHcCCc---ccccccccC
Q 045351          322 YLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       322 ~~~~~~~~---~~~~~~~~G  338 (349)
                      +.+.|++.   +.|+.+|.|
T Consensus       323 ~~~~~~~~~~~~~YG~tE~~  342 (546)
T PLN02330        323 FEAKFPGVQVQEAYGLTEHS  342 (546)
T ss_pred             HHHHcCCCeEEecccccccc
Confidence            99998543   334556654

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-39  Score=308.31  Aligned_cols=310  Identities=19%  Similarity=0.220  Sum_probs=241.9

Q ss_pred             ccCCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCC
Q 045351           15 HSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNS   94 (349)
Q Consensus        15 ~~~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~   94 (349)
                      +...+...+|+   |+.+.|...+  +.+ |+++|+++.+.++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+
T Consensus         4 ~~~~~~~~~~~---~~~~~l~~~a--~~~-p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~   76 (540)
T PRK05857          4 KKFQAMPQLPS---TVLDRVFEQA--RQQ-PEAIALRRCDGTSALRYRELVAEVGGLAADLRA-QSVSRGSRVLVISDNG   76 (540)
T ss_pred             ccccccccCCc---chHHHHHHHH--hhC-CCcEEEeecCCCceeeHHHHHHHHHHHHHHHHH-hCcCCCCEEEEEcCCC
Confidence            34556666665   8999999999  999 999999875446789999999999999999998 9999999999999999


Q ss_pred             chHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----CcceEEeCCCCccccccccCC
Q 045351           95 VRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KYGTVLLDSPEFEPLSATDSL  169 (349)
Q Consensus        95 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  169 (349)
                      +++++++|||+++|++++|+++..+.+++.++++.++++++++++........+     ....+..+.............
T Consensus        77 ~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (540)
T PRK05857         77 PETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLD  156 (540)
T ss_pred             HHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeeccccccccccccc
Confidence            999999999999999999999999999999999999999999987653221111     112222222111100000000


Q ss_pred             CCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc----cccCCCCCcEEEEecChhhHhhHHH
Q 045351          170 DYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA----VRAARSRPAVVLCTVPYFHSYGFTC  245 (349)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~l~~~p~~~~~g~~~  245 (349)
                          ...........++++++++|||||||.||||.+||+++..+......    .+. ...++++++.+|++|.+++..
T Consensus       157 ----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~h~~~l~~  231 (540)
T PRK05857        157 ----AASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVT-WVVGETTYSPLPATHIGGLWW  231 (540)
T ss_pred             ----ccccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccc-cccCceeeecCCccccchHHH
Confidence                00001122356789999999999999999999999999876543221    122 456789999999999999988


Q ss_pred             HHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHH
Q 045351          246 CLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL  325 (349)
Q Consensus       246 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~  325 (349)
                      .+.+++.|+++++. ..++..+++.|+++++|+++++|.+++.|.+.. .....+++++|.+++||++++....+ +.+.
T Consensus       232 ~~~~l~~G~~~v~~-~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~  308 (540)
T PRK05857        232 ILTCLMHGGLCVTG-GENTTSLLEILTTNAVATTCLVPTLLSKLVSEL-KSANATVPSLRLVGYGGSRAIAADVR-FIEA  308 (540)
T ss_pred             HHHHhhcceeEEec-CCChhHHHHHHHhcCcceEEeChHHHHHHHhcc-ccCCCcCccceEEEEcCccCCchhHH-HHHH
Confidence            88999999998764 568999999999999999999999999998876 55667789999999999999988775 4555


Q ss_pred             cC--CcccccccccCc
Q 045351          326 NR--TVNRQLCLEFGA  339 (349)
Q Consensus       326 ~~--~~~~~~~~~~G~  339 (349)
                      ++  ..+.|+.+|.|.
T Consensus       309 ~g~~i~~~YG~TE~~~  324 (540)
T PRK05857        309 TGVRTAQVYGLSETGC  324 (540)
T ss_pred             hCCeeecccCCCcCCc
Confidence            53  334456677654

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-39  Score=289.90  Aligned_cols=296  Identities=20%  Similarity=0.235  Sum_probs=253.2

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      +.|+.+.+.+++  +++ |+++|+++.+.++.+||+|+.+.+++.|+.|.. .|++.||.|+++++|++||+.++|++++
T Consensus        76 ~~ti~~~F~~~v--rr~-p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~-~~l~~GD~VAL~men~pefv~lWlGLaK  151 (649)
T KOG1179|consen   76 RRTIAELFLSQV--RRQ-PDKPAIIYEGPFQSLTFAELDARSNRVANYLHA-EGLKAGDVVALLMENRPEFVALWLGLAK  151 (649)
T ss_pred             CCcHHHHHHHHH--HhC-CCccEEEEeCCCceeeHHHHHHHHHHHHHHHHH-hhcccCCEEEEecCCChhHHHHHHhHHh
Confidence            489999999999  999 999999998777999999999999999999999 9999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-------CcceEEeCCC----CccccccccCCCCCCCC
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-------KYGTVLLDSP----EFEPLSATDSLDYYDDD  175 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~~~  175 (349)
                      +|++.+.||++...+.+.|.++.++++.++++.+..+.+.+.       +......+..    ...++....+.....+.
T Consensus       152 lGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~v  231 (649)
T KOG1179|consen  152 LGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHPV  231 (649)
T ss_pred             hCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCCC
Confidence            999999999999999999999999999999998766444331       2223333211    12233333222111122


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGE  254 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~  254 (349)
                      +........-.++++.+|||||||.||+.++||.-...........++ ++++|+++..+|+||..|. .++..++..|+
T Consensus       232 p~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g-~~~~DvvY~~lPLYHsaa~ilGi~~~l~~Ga  310 (649)
T KOG1179|consen  232 PVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFG-MTADDVVYTTLPLYHSAAGILGIGGCLLHGA  310 (649)
T ss_pred             CcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhC-CCccceEEEcchhHHHHHHHHHHHHHHhcCc
Confidence            223444566678999999999999999999999999988887888888 8999999999999999988 89999999999


Q ss_pred             EEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCcc
Q 045351          255 SLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN  330 (349)
Q Consensus       255 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~  330 (349)
                      |+|+-.+|++..+|+...+|++|+..-+-.+++.|++++ ......-..+|..+  |..+-+++|++|.++|+..+
T Consensus       311 T~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p-~~~~er~HkVRla~--GNGLR~diW~~Fv~RFg~~~  383 (649)
T KOG1179|consen  311 TVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQP-PSPEERQHKVRLAY--GNGLRPDIWQQFVKRFGIIK  383 (649)
T ss_pred             eEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCC-CChhhcCceEEEEe--cCCCCchHHHHHHHHcCCCe
Confidence            999999999999999999999999999999999999998 76666677889888  88899999999999997653

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=5.8e-39  Score=312.18  Aligned_cols=307  Identities=20%  Similarity=0.205  Sum_probs=234.8

Q ss_pred             hhhhhcccCCCCCCCCCeEEEeCCC----CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           31 TSYVFSLLESHAPPPDTTALIDTAS----RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        31 ~~~l~~~~~~~~~~~~~~ai~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      .+.|...+  ..+ |+++|+++...    .+.+||+||.+++.++|+.|++ +|+++||+|+++++|++++++++|||++
T Consensus        60 ~~~l~~~~--~~~-p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  135 (625)
T TIGR02188        60 YNCVDRHL--EAR-PDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKS-LGVKKGDRVAIYMPMIPEAAIAMLACAR  135 (625)
T ss_pred             HHHHHHhh--ccC-CCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            44555667  778 99999987432    3689999999999999999998 9999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc---------c----cccC--cc-eEEeCCCCcc-ccccccCC
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK---------I----PQLK--YG-TVLLDSPEFE-PLSATDSL  169 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~---------~----~~~~--~~-~~~~~~~~~~-~~~~~~~~  169 (349)
                      +|++++|+++..+.+++.++++.++++++|+++.....         +    ....  .. ++.++..... ........
T Consensus       136 ~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (625)
T TIGR02188       136 IGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDV  215 (625)
T ss_pred             hCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccc
Confidence            99999999999999999999999999999998753211         0    0011  11 2222211100 00000000


Q ss_pred             C----CCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhh-hhccccCCCCCcEEEEecChhhHhhH-
Q 045351          170 D----YYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG-GHAVRAARSRPAVVLCTVPYFHSYGF-  243 (349)
Q Consensus       170 ~----~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~g~-  243 (349)
                      .    ..............++++++|+|||||||.||||+++|++++..... ....++ +.++|++++..|++|..|. 
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~g~~  294 (625)
T TIGR02188       216 WWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFD-IKDGDIFWCTADVGWITGHS  294 (625)
T ss_pred             cHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccC-CCCCcEEEECCCchhhhccH
Confidence            0    00001111122456789999999999999999999999998765544 333444 6888999999999999987 


Q ss_pred             HHHHhhhhcCCEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcCC-CCCCCCCcchheehccCCCCCHHH
Q 045351          244 TCCLRSLGMGESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGG-TMDGYDLSSIEVVASGGAHLTLSV  318 (349)
Q Consensus       244 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~-~~~~~~l~~lr~i~~gG~~l~~~~  318 (349)
                      ..++.+|..|+++++.+.    +++..+++.++++++|++.++|++++.|.+... .....++++||.+++||+++++++
T Consensus       295 ~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~  374 (625)
T TIGR02188       295 YIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEA  374 (625)
T ss_pred             HHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHH
Confidence            568899999999999853    489999999999999999999999999988641 123467899999999999999999


Q ss_pred             HHHHHHHcCC-----cccccccccCceee
Q 045351          319 IRKYLQLNRT-----VNRQLCLEFGAPII  342 (349)
Q Consensus       319 ~~~~~~~~~~-----~~~~~~~~~G~~~i  342 (349)
                      ++++.+.++.     .+.|+.||.|..++
T Consensus       375 ~~~~~~~~~~~~~~i~~~yG~TE~~~~~~  403 (625)
T TIGR02188       375 WMWYYKVVGKERCPIVDTWWQTETGGIMI  403 (625)
T ss_pred             HHHHHHHcCCCCCceEecccccccCCcee
Confidence            9999998853     24456677665443

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-39  Score=308.17  Aligned_cols=294  Identities=18%  Similarity=0.209  Sum_probs=243.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.++|...+  +++ |+++|+++.  ++.+||+||.++++++|++|.+ .|+++||+|+++++|+++++++++||+++
T Consensus        43 ~~~~~~l~~~a--~~~-p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~  116 (537)
T PRK13382         43 MGPTSGFAIAA--QRC-PDRPGLIDE--LGTLTWRELDERSDALAAALQA-LPIGEPRVVGIMCRNHRGFVEALLAANRI  116 (537)
T ss_pred             CCHHHHHHHHH--HhC-CCCeEEEeC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCcHHHHHHHHHHHHc
Confidence            68999999999  999 999999986  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc------CcceEEeCCCC----ccccccccCCCCCCCCcc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL------KYGTVLLDSPE----FEPLSATDSLDYYDDDEE  177 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  177 (349)
                      |++++|+++..+.+++.++++.+++++++++.+....+...      ...+.......    +..+...        ...
T Consensus       117 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  188 (537)
T PRK13382        117 GADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAA--------HAG  188 (537)
T ss_pred             CcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhc--------cCc
Confidence            99999999999999999999999999999987654433220      01111111110    1111110        000


Q ss_pred             ccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEE
Q 045351          178 RVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLV  257 (349)
Q Consensus       178 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v  257 (349)
                      . .....+++.++++|||||||.||||+++|+++..........+. +..+++++...|++|.+|+..++.++..|++++
T Consensus       189 ~-~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~  266 (537)
T PRK13382        189 Q-RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTP-WRAEEPTVIVAPMFHAWGFSQLVLAASLACTIV  266 (537)
T ss_pred             C-CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhC-CCCCCeEEEecChHhhhHHHHHHHHHhcCcEEE
Confidence            0 11234678999999999999999999999999888777666666 678899999999999999988899999999999


Q ss_pred             EcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCC--CCCCCCcchheehccCCCCCHHHHHHHHHHcCC--ccccc
Q 045351          258 CMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQL  333 (349)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~  333 (349)
                      +...+++..+++.|+++++|++.++|.+++.|.+.. .  ....+++++|.+++||+++++++++.+.+.++.  .+.|+
T Consensus       267 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG  345 (537)
T PRK13382        267 TRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLP-AEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYN  345 (537)
T ss_pred             ECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCC-chhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEeccc
Confidence            999999999999999999999999999999998764 2  234456789999999999999999999999853  34455


Q ss_pred             ccccC
Q 045351          334 CLEFG  338 (349)
Q Consensus       334 ~~~~G  338 (349)
                      .+|.|
T Consensus       346 ~TE~~  350 (537)
T PRK13382        346 ATEAG  350 (537)
T ss_pred             ccccC
Confidence            66655

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.8e-39  Score=306.66  Aligned_cols=297  Identities=21%  Similarity=0.258  Sum_probs=249.9

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|...+  +.+ |+++|+++.  ++++||+||++++.++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus         5 ~~i~~~l~~~~--~~~-~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~g~~V~l~~~~~~~~~~~~la~~~~   78 (513)
T PRK07656          5 MTLPELLARAA--RRF-GDKEAYVFG--DQRLTYAELNARVRRAAAALAA-LGIGKGDRVAIWAPNSPHWVIAALGALKA   78 (513)
T ss_pred             ccHHHHHHHHH--HHC-CCCeEEEeC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence            68999999999  889 999999997  8899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----c-Ccc-eEEeCCCCc----------cccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----L-KYG-TVLLDSPEF----------EPLSATDSLDY  171 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~-~~~-~~~~~~~~~----------~~~~~~~~~~~  171 (349)
                      |++++|+++..+.+++..+++.++++++++++........    . ... ++.......          .++...     
T Consensus        79 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  153 (513)
T PRK07656         79 GAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAA-----  153 (513)
T ss_pred             CeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhc-----
Confidence            9999999999999999999999999999998765443221    0 111 222221111          111110     


Q ss_pred             CCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhh
Q 045351          172 YDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSL  250 (349)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l  250 (349)
                        ...........++++++++|||||||.||+|.++|+++...+......++ +.+++++++..|++|.+|+ ..++.++
T Consensus       154 --~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (513)
T PRK07656        154 --GDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG-LTEGDRYLAANPFFHVFGYKAGVNAPL  230 (513)
T ss_pred             --CCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhC-CCCCCeEEEccchHHHHHHHHHHHHHH
Confidence              01111223457789999999999999999999999999988887777777 7899999999999999998 5678999


Q ss_pred             hcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--
Q 045351          251 GMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--  328 (349)
Q Consensus       251 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--  328 (349)
                      ..|+++++.+.+++..+++.++++++|++.++|.+++.|.+.. .....+++++|.+++||+++++++++++.+.++.  
T Consensus       231 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~  309 (513)
T PRK07656        231 MRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHP-DRSAEDLSSLRLAVTGAASMPVALLERFESELGVDI  309 (513)
T ss_pred             HcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCC-CcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCc
Confidence            9999999998899999999999999999999999999999987 6666678999999999999999999999999865  


Q ss_pred             -cccccccccCc
Q 045351          329 -VNRQLCLEFGA  339 (349)
Q Consensus       329 -~~~~~~~~~G~  339 (349)
                       .+.|+.+|.|+
T Consensus       310 ~~~~YG~tE~~~  321 (513)
T PRK07656        310 VLTGYGLSEASG  321 (513)
T ss_pred             eEeEEccccCCC
Confidence             34456677654

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=4.7e-39  Score=300.50  Aligned_cols=314  Identities=22%  Similarity=0.241  Sum_probs=238.4

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCC--CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTAS--RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLF  105 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~  105 (349)
                      .++...+.+++  +.+ ++.+|+.....  .+.+||+|+++++.++|+.|.. .|+..||+|+|++.|+++|+++.+||+
T Consensus        16 ~~~~~~~~~~~--~~~-~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~-lg~~~gdrvai~a~nr~eW~i~d~a~~   91 (613)
T COG1022          16 HTLPKRLAERV--KDR-PDGVALMYKELGGWEAITYRELYERVRALASGLLS-LGIPAGDRVAIFAANRPEWAIADLAIL   91 (613)
T ss_pred             ccHHHHHHHHh--hcC-CcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            57999999999  999 99889986543  3899999999999999999999 999779999999999999999999999


Q ss_pred             hcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcc-cccccccCc--c----eE-EeC---------CCCccccccccC
Q 045351          106 SLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDT-AHKIPQLKY--G----TV-LLD---------SPEFEPLSATDS  168 (349)
Q Consensus       106 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~-~~~~~~~~~--~----~~-~~~---------~~~~~~~~~~~~  168 (349)
                      .+|++.+|+.+..+.+++.++++.++++++|++... .+.+.....  +    .+ ..+         ...+........
T Consensus        92 ~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (613)
T COG1022          92 ALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGI  171 (613)
T ss_pred             HcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccc
Confidence            999999999999999999999999999999998743 222221110  0    00 000         000111111100


Q ss_pred             CC--CCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHH-
Q 045351          169 LD--YYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTC-  245 (349)
Q Consensus       169 ~~--~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-  245 (349)
                      ..  ...........+..+||+|.|+|||||||.||||++||+|+++++...........++|++++.+|+.|++.... 
T Consensus       172 ~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~  251 (613)
T COG1022         172 SLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFE  251 (613)
T ss_pred             hhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHH
Confidence            00  000111112246789999999999999999999999999999999998887743689999999999999999954 


Q ss_pred             HHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcC------CC------------------------
Q 045351          246 CLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG------GT------------------------  295 (349)
Q Consensus       246 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~------~~------------------------  295 (349)
                      ....+..|+++....  ++..+++.++++++|.++++|.+|+.+.+.-      ..                        
T Consensus       252 ~~~~~~~g~~~~~~~--~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~  329 (613)
T COG1022         252 GGLALYGGVTVLFKE--DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG  329 (613)
T ss_pred             HHHHhhcceEEEecC--CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcc
Confidence            555555555555544  9999999999999999999999997764321      00                        


Q ss_pred             ------------------CCCCCCcchheehccCCCCCHHHHHHHHHHc-CCcccccccccCceeeecCCCC
Q 045351          296 ------------------MDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLCLEFGAPIISLSKQQ  348 (349)
Q Consensus       296 ------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~~~~G~~~i~~~~~~  348 (349)
                                        ++... .++|.+++||+++++++...++... |...-||+||+.+.+...++++
T Consensus       330 ~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~~~  400 (613)
T COG1022         330 GGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDR  400 (613)
T ss_pred             cCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEccccC
Confidence                              00111 4789999999999999999999876 5555577888755444443443

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-39  Score=302.91  Aligned_cols=293  Identities=20%  Similarity=0.246  Sum_probs=244.0

Q ss_pred             chhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcC
Q 045351           29 SVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLG  108 (349)
Q Consensus        29 tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G  108 (349)
                      .+.+++...+  +.+ |+++|++++  ++.+||+||+++++++|+.|.++.|+.+||+|+++++|+++++++++||+++|
T Consensus         3 ~~~~~~~~~a--~~~-p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G   77 (496)
T PRK06839          3 GIAYWIEKRA--YLH-PDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVE   77 (496)
T ss_pred             cHHHHHHHHH--HHC-CCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            5788999999  899 999999987  89999999999999999999754799999999999999999999999999999


Q ss_pred             CeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccC-----cceEEeCCCCccccccccCCCCCCCCcccccccc
Q 045351          109 VVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK-----YGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSV  183 (349)
Q Consensus       109 ~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (349)
                      ++++|+++..+.+++..+++.++++++++++.....+....     ...+.+.  ++.+....         ........
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~~  146 (496)
T PRK06839         78 CIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISIT--SLKEIEDR---------KIDNFVEK  146 (496)
T ss_pred             cEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEec--chHhhhcc---------CCCCCCCC
Confidence            99999999999999999999999999999876554433211     1122221  11111111         00111234


Q ss_pred             CCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCC
Q 045351          184 SLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKF  262 (349)
Q Consensus       184 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~  262 (349)
                      .++++++|+|||||||.||+|.++|+++..........++ +..++++++.+|++|.+|+ ..++.++..|+++++.+.+
T Consensus       147 ~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~  225 (496)
T PRK06839        147 NESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAID-LTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKF  225 (496)
T ss_pred             CCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcC-CCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCC
Confidence            5689999999999999999999999999877666556666 6889999999999999998 5667899999999999999


Q ss_pred             CHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc-CCcccccccccCc
Q 045351          263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLCLEFGA  339 (349)
Q Consensus       263 ~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~~~~G~  339 (349)
                      ++..+++.++++++|++.++|.+++.+.... .....+++++|.+++||+++++++.+.+.+.. +..+.|+.+|.|.
T Consensus       226 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~  302 (496)
T PRK06839        226 EPTKALSMIEKHKVTVVMGVPTIHQALINCS-KFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSP  302 (496)
T ss_pred             CHHHHHHHHHhhCCeEEEehHHHHHHHHhCc-ccccCCCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCc
Confidence            9999999999999999999999999999886 66667789999999999999999999998862 2334466677664

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1e-38  Score=301.50  Aligned_cols=295  Identities=21%  Similarity=0.248  Sum_probs=243.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +|+.++|.+++  ... ||++|+++.  ++.+||+||.+++.++|++|.+ .|+++||+|+++++|+.++++++|||+++
T Consensus         2 ~~~~~~l~~~a--~~~-p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~~   75 (483)
T PRK03640          2 ETMPNWLKQRA--FLT-PDRTAIEFE--EKKVTFMELHEAVVSVAGKLAA-LGVKKGDRVALLMKNGMEMILVIHALQQL   75 (483)
T ss_pred             CcHHHHHHHHH--HhC-CCceEEEeC--CeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHhC
Confidence            58999999999  999 999999987  7999999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |++++|+++..+.+++..+++.++++++++++.......... ..      .+.++.....      ..........+++
T Consensus        76 G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-~~------~~~~~~~~~~------~~~~~~~~~~~~~  142 (483)
T PRK03640         76 GAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-SV------KFAELMNGPK------EEAEIQEEFDLDE  142 (483)
T ss_pred             CcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-cc------cHHHHhhccc------ccCCCCCCCCCCC
Confidence            999999999999999999999999999999876543322210 00      0111111100      1111122346789


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHH
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRM  267 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~  267 (349)
                      +++++|||||||.||+|.+||.++...+......++ +.+++++++.+|++|.+|+..++.++..|+++++.+.+++..+
T Consensus       143 ~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~  221 (483)
T PRK03640        143 VATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLG-LTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKI  221 (483)
T ss_pred             eEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcC-CCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHH
Confidence            999999999999999999999999888776666666 7899999999999999999888899999999999999999999


Q ss_pred             HHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc-CCcccccccccCceeeec
Q 045351          268 LKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLCLEFGAPIISL  344 (349)
Q Consensus       268 ~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~~~~G~~~i~~  344 (349)
                      ++.++++++|++.++|.+++.|.... ... ....++|.+++||+++++++++.+.+.- +..+.|+.+|.|..++..
T Consensus       222 ~~~i~~~~~t~l~~~P~~~~~l~~~~-~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  297 (483)
T PRK03640        222 NKLLQTGGVTIISVVSTMLQRLLERL-GEG-TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTL  297 (483)
T ss_pred             HHHHHHhCCcEEEeHHHHHHHHHhCc-Ccc-ccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCccccccccc
Confidence            99999999999999999999998764 322 2346899999999999999999887742 333445566665444433

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.3e-38  Score=307.79  Aligned_cols=301  Identities=22%  Similarity=0.233  Sum_probs=237.7

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeC------CCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDT------ASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLY  101 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~------~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~  101 (349)
                      .|+.++|...+  +.+ |+++|+++.      ..++++||+||.+++.++|+.|++ +|+++||+|+++++|++++++++
T Consensus        25 ~t~~~~l~~~a--~~~-p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-~Gi~~gd~V~i~~~n~~e~~~~~  100 (632)
T PRK07529         25 ASTYELLSRAA--ARH-PDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHS-LGVGPGDVVAFLLPNLPETHFAL  100 (632)
T ss_pred             CCHHHHHHHHH--HHC-CCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHH
Confidence            58999999999  999 999999863      135799999999999999999998 99999999999999999999999


Q ss_pred             HHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc-----ccc----cc-Cc-ceEEeCCCCc----------
Q 045351          102 LSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH-----KIP----QL-KY-GTVLLDSPEF----------  160 (349)
Q Consensus       102 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~----~~-~~-~~~~~~~~~~----------  160 (349)
                      |||+++| +++|+++.++.+++.++++.++++++++++....     .+.    .. .. .++.++....          
T Consensus       101 lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (632)
T PRK07529        101 WGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVP  179 (632)
T ss_pred             HHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccccc
Confidence            9999999 5799999999999999999999999999865321     110    00 11 1222222110          


Q ss_pred             ----------cccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcE
Q 045351          161 ----------EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAV  230 (349)
Q Consensus       161 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~  230 (349)
                                .++....... . ...........++++++++|||||||.||+|.+||+++..........+. +.++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~-~~~~d~  256 (632)
T PRK07529        180 LIRRKAHARILDFDAELARQ-P-GDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLG-LGPGDT  256 (632)
T ss_pred             ccccccccccCCHHHHHhcC-C-CccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcC-CCCCCE
Confidence                      0010000000 0 00011112346789999999999999999999999999988877776666 688999


Q ss_pred             EEEecChhhHhhH-HHHHhhhhcCCEEEEcCC--C-C---HHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcc
Q 045351          231 VLCTVPYFHSYGF-TCCLRSLGMGESLVCMGK--F-D---FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS  303 (349)
Q Consensus       231 ~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~--~-~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~  303 (349)
                      +++.+|++|.+++ ..++.++..|+++++.++  + +   ...+++.++++++|++.++|.++..|.+.+  ....++++
T Consensus       257 ~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--~~~~~~~s  334 (632)
T PRK07529        257 VFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP--VDGHDISS  334 (632)
T ss_pred             EEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc--ccCCCccc
Confidence            9999999999998 578899999999999853  2 2   367889999999999999999999999874  33457899


Q ss_pred             hheehccCCCCCHHHHHHHHHHcC--CcccccccccC
Q 045351          304 IEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEFG  338 (349)
Q Consensus       304 lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~G  338 (349)
                      ||.+++||+++++++.+++.+.++  ..+.|+.||.|
T Consensus       335 lr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~  371 (632)
T PRK07529        335 LRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEAT  371 (632)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccC
Confidence            999999999999999999999884  23345556654

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-38  Score=300.00  Aligned_cols=290  Identities=16%  Similarity=0.161  Sum_probs=239.5

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      |++.+.|.+.+  +.+ |+++|+++.  ++.+||.||.+++.++|+.|.+ .| .+|++|+|+++|+++++++++||+++
T Consensus         1 ~~~~~~~~~~a--~~~-p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~~-~~~~~v~i~~~~~~~~~~~~la~~~~   73 (487)
T PRK07638          1 MGITKEYKKHA--SLQ-PNKIAIKEN--DRVLTYKDWFESVCKVANWLNE-KE-SKNKTIAILLENRIEFLQLFAGAAMA   73 (487)
T ss_pred             CChHHHHHHHH--HhC-CCCeEEecC--CcEeeHHHHHHHHHHHHHHHHH-hC-CCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            46889999999  899 999999987  7899999999999999999998 77 48999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |++++|+++..+.+++.++++.+++++++++......+......++..+  .+......       ............++
T Consensus        74 G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~  144 (487)
T PRK07638         74 GWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID--EWKRMIEK-------YLPTYAPIENVQNA  144 (487)
T ss_pred             CeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEeh--hhhhhhhh-------ccccccccccCCCC
Confidence            9999999999999999999999999999999866555443222332222  12111111       11111111233567


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHH
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRM  267 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~  267 (349)
                      +++|+|||||||.||||+++|+++...+......++ +.++|+++...|++|..++...+.+++.|+++++.+.+++..+
T Consensus       145 ~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~-~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~  223 (487)
T PRK07638        145 PFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFH-MKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQV  223 (487)
T ss_pred             cEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcC-cCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHH
Confidence            899999999999999999999999998887777777 7899999999999999988888999999999999999999999


Q ss_pred             HHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccCc
Q 045351          268 LKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       268 ~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                      ++.++++++|++.++|+++..|.+.. ..    ..+.+.++++|++++.++.+++.+.+|+.   +.|+.+|.|.
T Consensus       224 ~~~i~~~~~t~~~~~P~~~~~l~~~~-~~----~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~  293 (487)
T PRK07638        224 LDKLETENISVMYTVPTMLESLYKEN-RV----IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSF  293 (487)
T ss_pred             HHHHHHcCCeEEEeCcHHHHHHHhCc-Cc----CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCc
Confidence            99999999999999999999998763 21    24455667888999999999999998643   3345666653

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6e-39  Score=312.11  Aligned_cols=305  Identities=17%  Similarity=0.185  Sum_probs=227.7

Q ss_pred             cch-hhhhhcccCCCC--CCCCCeEEEeCCC----CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHH
Q 045351           28 TSV-TSYVFSLLESHA--PPPDTTALIDTAS----RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        28 ~tl-~~~l~~~~~~~~--~~~~~~ai~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      .|. .++++..+  ..  . |+++|+++...    .+++||+||+++++++|+.|++ +|+++||+|+++++|+++++++
T Consensus        58 ~n~~~~~l~~~~--~~~~~-~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GDrV~i~~~n~~e~~~~  133 (647)
T PTZ00237         58 LNTCYNVLDIHV--KNPLK-RDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLN-LNISKNDNVLIYMANTLEPLIA  133 (647)
T ss_pred             eeHHHHHHHHhh--cccCC-CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHH
Confidence            444 44455554  33  6 89999987421    3689999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccc---------ccccc----c---CcceEEeCC-C-----
Q 045351          101 YLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA---------HKIPQ----L---KYGTVLLDS-P-----  158 (349)
Q Consensus       101 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~----~---~~~~~~~~~-~-----  158 (349)
                      +|||+++|++++|+++..+.+++.++++.++++++|+++...         +.+.+    .   ...++.+.. .     
T Consensus       134 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~  213 (647)
T PTZ00237        134 MLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSES  213 (647)
T ss_pred             HHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccc
Confidence            999999999999999999999999999999999999975321         10100    0   012222210 0     


Q ss_pred             C---------------ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhh-HHHHHhhhhccc
Q 045351          159 E---------------FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRN-LVAAVAGGHAVR  222 (349)
Q Consensus       159 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~-l~~~~~~~~~~~  222 (349)
                      .               +.++...... . ............++++++|+|||||||.||||+++|.+ +...........
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~  291 (647)
T PTZ00237        214 DLKKIETIPTIPNTLSWYDEIKKIKE-N-NQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII  291 (647)
T ss_pred             ccccccccCCCcccccHHHHHhhhcc-c-cCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc
Confidence            0               0000000000 0 00000112245679999999999999999999999998 444333323333


Q ss_pred             cCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCC--CC----HHHHHHHHHhhcccEEEechHHHHHHHhcCCC-
Q 045351          223 AARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGK--FD----FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT-  295 (349)
Q Consensus       223 ~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~----~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~-  295 (349)
                      . ...++++++..|+.|+.+...++.+|+.|+++++.+.  ++    +..+++.++++++|++.++|++++.|.+.... 
T Consensus       292 ~-~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  370 (647)
T PTZ00237        292 E-KDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEA  370 (647)
T ss_pred             C-CCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccc
Confidence            3 5678999999999999877778899999999999853  22    68899999999999999999999999875301 


Q ss_pred             ---CCCCCCcchheehccCCCCCHHHHHHHHHHcC--CcccccccccCc
Q 045351          296 ---MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEFGA  339 (349)
Q Consensus       296 ---~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~G~  339 (349)
                         ....++++||.+++||+++++++.+++.+.++  ..+.|+.||.|.
T Consensus       371 ~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~  419 (647)
T PTZ00237        371 TIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGI  419 (647)
T ss_pred             cccccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhCh
Confidence               24567899999999999999999999999884  334456677664

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.1e-38  Score=307.24  Aligned_cols=303  Identities=21%  Similarity=0.270  Sum_probs=238.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.++|...+  +.+ |+++|+++.  ++++||+||.++++++|+.|.+ +|+++||+|+|+++|++++++++|||+++
T Consensus        14 ~~~~~~l~~~~--~~~-p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~-~Gl~~gd~Vai~~~n~~e~~~~~la~~~~   87 (579)
T PLN03102         14 LTPITFLKRAS--ECY-PNRTSIIYG--KTRFTWPQTYDRCCRLAASLIS-LNITKNDVVSVLAPNTPAMYEMHFAVPMA   87 (579)
T ss_pred             ccHHHHHHHHH--HhC-CCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence            57889999999  889 999999987  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----------CcceEEeCCCCc-----------ccccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----------KYGTVLLDSPEF-----------EPLSA  165 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~-----------~~~~~  165 (349)
                      |++++|+++..+.+++.++++.++++++|++++..+.+.+.           ..+++.++....           .++..
T Consensus        88 G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (579)
T PLN03102         88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQ  167 (579)
T ss_pred             CcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHh
Confidence            99999999999999999999999999999987655433221           123333332110           00000


Q ss_pred             ccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHH
Q 045351          166 TDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTC  245 (349)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~  245 (349)
                      .... .. ...........++++++|+|||||||.||+|+++|+++..........+. +...++++..+|++|..|+..
T Consensus       168 ~~~~-~~-~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~~~l~~~pl~h~~g~~~  244 (579)
T PLN03102        168 RGEP-TP-SLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWE-MGTCPVYLWTLPMFHCNGWTF  244 (579)
T ss_pred             ccCC-CC-cccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcC-CCCCCeEEecCChhhhcchhH
Confidence            0000 00 00000011235689999999999999999999999997655444444444 567788999999999999977


Q ss_pred             HHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHH
Q 045351          246 CLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL  325 (349)
Q Consensus       246 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~  325 (349)
                      .+.++..|+++++.+++++..+++.|+++++|++.++|.++..|.+.. .......++++.+++||+++++.+.+++.+ 
T Consensus       245 ~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-  322 (579)
T PLN03102        245 TWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGN-SLDLSPRSGPVHVLTGGSPPPAALVKKVQR-  322 (579)
T ss_pred             HHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCc-ccccCCcccceEEEECCCCCCHHHHHHHHH-
Confidence            788899999999998889999999999999999999999999998875 444445567888999999999999998865 


Q ss_pred             cC--CcccccccccCcee
Q 045351          326 NR--TVNRQLCLEFGAPI  341 (349)
Q Consensus       326 ~~--~~~~~~~~~~G~~~  341 (349)
                      ++  ..+.|+.+|.|+.+
T Consensus       323 ~g~~i~~~YG~tE~~~~~  340 (579)
T PLN03102        323 LGFQVMHAYGLTEATGPV  340 (579)
T ss_pred             cCCeEEeecCccccCccc
Confidence            42  33445666766433

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=8.5e-40  Score=303.26  Aligned_cols=296  Identities=26%  Similarity=0.352  Sum_probs=230.5

Q ss_pred             hhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEec
Q 045351           34 VFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSP  113 (349)
Q Consensus        34 l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~  113 (349)
                      |.+++  +++ ||++|+++ +.++.+||+||+++++++|..|++ +|+++||+|+++++|+.+++++++||+++|++++|
T Consensus         1 f~~~a--~~~-pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~   75 (417)
T PF00501_consen    1 FERQA--QRY-PDRIALID-DEGRSLTYKQLYERVRKLAAALRK-LGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVP   75 (417)
T ss_dssp             HHHHH--HHS-TTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHH-TTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEE
T ss_pred             ChhHH--hhC-CCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHH-hCCCccccccccCCccceeeeeecccccccccccc
Confidence            35567  778 99999999 348999999999999999999997 99999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhcCCeEEEE----cCcccccccc------cCcceEEeCCCCccccccccCCCCCCCCccccccc-
Q 045351          114 CNPSCTIPEILRQIHLSKPVIAFA----THDTAHKIPQ------LKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVS-  182 (349)
Q Consensus       114 i~~~~~~~~l~~~l~~~~~~~i~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  182 (349)
                      +++..+.+++.++++.++++++++    +......+..      ....++.++.............    ......... 
T Consensus        76 l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  151 (417)
T PF00501_consen   76 LDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSA----SLSDEPQSPE  151 (417)
T ss_dssp             EETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHH----HHCHCSHSTT
T ss_pred             cccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccccccccc----ccccccccCC
Confidence            999999999999999999999997    2222111111      1122444443332211100000    000000000 


Q ss_pred             cCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhh--ccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEc
Q 045351          183 VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH--AVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCM  259 (349)
Q Consensus       183 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~  259 (349)
                      ..++++++++|||||||.||+|.++|++++..+..+.  ...+ +.  +++++.+|++|.+|+ ..++.+++.|++++++
T Consensus       152 ~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~-~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~  228 (417)
T PF00501_consen  152 DSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFG-LG--DRILSFLPLSHIFGLISALLAALFSGATLVLP  228 (417)
T ss_dssp             HTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTT-TT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEE
T ss_pred             CCccceeEeeccccccccccccccccccccccccccccccccc-cC--ceEEeecccccccccccccccccccccccccc
Confidence            1569999999999999999999999999999987764  2222 23  599999999999999 9999999999999999


Q ss_pred             CCCC---HHHHHHHHHhhcccEEEechHHHHHHHhcCCCC----CCCCCcchheehccCCCCCHHHHHHHHHHcCC---c
Q 045351          260 GKFD---FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM----DGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT---V  329 (349)
Q Consensus       260 ~~~~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~----~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~---~  329 (349)
                      +.++   +..+++.++++++|++.++|.+++.|++.. ..    ...++++||.+++||+++++++.+++.+.++.   .
T Consensus       229 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~  307 (417)
T PF00501_consen  229 SPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSP-EEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPII  307 (417)
T ss_dssp             SSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHH-HTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEE
T ss_pred             ccccccccccchhcccccccccccccccccccccccc-cccccccccccccccccccccccCChhhccccccccccccce
Confidence            8764   477899999999999999999999999843 22    24578899999999999999999999999975   3


Q ss_pred             ccccccccCceee
Q 045351          330 NRQLCLEFGAPII  342 (349)
Q Consensus       330 ~~~~~~~~G~~~i  342 (349)
                      +.|+.+|.|...+
T Consensus       308 ~~YG~tE~~~~~~  320 (417)
T PF00501_consen  308 NLYGSTETGSIAT  320 (417)
T ss_dssp             EEEEEGGGSSEEE
T ss_pred             ecccccccceeee
Confidence            5566788876655

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-38  Score=306.23  Aligned_cols=322  Identities=24%  Similarity=0.263  Sum_probs=248.3

Q ss_pred             ccccceeeccCCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCE
Q 045351            7 FCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDV   86 (349)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~   86 (349)
                      ++..+.....+..+...+.++.|+.+++.+.+  +++ |+++|+++.  ++.+||.||.++++++|+.|.+ .|+++||+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~-p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~-~gi~~gd~   84 (573)
T PRK05605         11 ADKPWLQSYAPWTPHDLDYGDTTLVDLYDNAV--ARF-GDRPALDFF--GATTTYAELGKQVRRAAAGLRA-LGVRPGDR   84 (573)
T ss_pred             hcCCchhhcCCCCCcccCCCcCCHHHHHHHHH--HHC-CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCE
Confidence            34444444444333333323379999999999  889 999999986  7899999999999999999998 99999999


Q ss_pred             EEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----cCcc-eEEeCCCC--
Q 045351           87 AFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----LKYG-TVLLDSPE--  159 (349)
Q Consensus        87 V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~-~~~~~~~~--  159 (349)
                      |+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++|++++....+..    .... ++.++...  
T Consensus        85 V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  164 (573)
T PRK05605         85 VAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAM  164 (573)
T ss_pred             EEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccc
Confidence            9999999999999999999999999999999999999999999999999997764433221    1111 11111000  


Q ss_pred             -------------------------------ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeech
Q 045351          160 -------------------------------FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQ  208 (349)
Q Consensus       160 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~  208 (349)
                                                     +.++......   ............++++++++|||||||.||+|.+||
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~  241 (573)
T PRK05605        165 PLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIG---GDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTH  241 (573)
T ss_pred             ccccccccccccccccccccccccCCCcceeHHHHhhcccc---ccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEec
Confidence                                           0000000000   000001112345789999999999999999999999


Q ss_pred             hhHHHHHhhhhccccC-CCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHH
Q 045351          209 RNLVAAVAGGHAVRAA-RSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVV  286 (349)
Q Consensus       209 ~~l~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l  286 (349)
                      +++...+......+.. ...++++++..|++|.+|+ ..++.+++.|+++++.+.+++..+++.++++++|++.++|.++
T Consensus       242 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~  321 (573)
T PRK05605        242 RNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLY  321 (573)
T ss_pred             HHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHH
Confidence            9998877654332221 1357899999999999998 5677889999999999889999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--CcccccccccC
Q 045351          287 LKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEFG  338 (349)
Q Consensus       287 ~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~G  338 (349)
                      +.|.+.. .....+++++|.+++||+++++++.+++.+.++  ..+.|+.+|.|
T Consensus       322 ~~l~~~~-~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~  374 (573)
T PRK05605        322 EKIAEAA-EERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETS  374 (573)
T ss_pred             HHHHhCc-cccCCCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhc
Confidence            9999886 666677899999999999999999999988774  23334556654

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-38  Score=307.10  Aligned_cols=299  Identities=20%  Similarity=0.215  Sum_probs=242.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.+.|...+  +++ |+++|++++  ++.+||+||.++++++|+.|.+ .|+++||+|+++++|+.+++++++||+++
T Consensus        37 ~tl~~~l~~~a--~~~-p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~v~~~lA~~~~  110 (600)
T PRK08279         37 RSLGDVFEEAA--ARH-PDRPALLFE--DQSISYAELNARANRYAHWAAA-RGVGKGDVVALLMENRPEYLAAWLGLAKL  110 (600)
T ss_pred             ccHHHHHHHHH--HhC-CCCcEEEeC--CCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            78999999999  999 999999997  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----Cc-ceEEeCCC------CccccccccCCCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KY-GTVLLDSP------EFEPLSATDSLDYYDDD  175 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~~~~~~~~~~~~  175 (349)
                      |++++|+++..+.+++.++++.+++++++++++..+.+...     .. .++..+..      .+.++...... .. ..
T Consensus       111 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~  188 (600)
T PRK08279        111 GAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAG-AP-TT  188 (600)
T ss_pred             CcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhccc-CC-cc
Confidence            99999999999999999999999999999998765544321     11 12222111      11111111000 00 00


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHH-HHHhhhhcCC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT-CCLRSLGMGE  254 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~  254 (349)
                      ..........+++++|+|||||||.||||++||+++...+......++ +.+++++++.+|++|.+|+. .++.++..|+
T Consensus       189 ~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~  267 (600)
T PRK08279        189 NPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLR-LTPDDVLYCCLPLYHNTGGTVAWSSVLAAGA  267 (600)
T ss_pred             CCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcC-CCCCcEEEEecCchhhhhHHHHHHHHHhcCc
Confidence            011122346689999999999999999999999999999988877777 78999999999999999994 5557788999


Q ss_pred             EEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC---ccc
Q 045351          255 SLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT---VNR  331 (349)
Q Consensus       255 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~~  331 (349)
                      ++++.+.+++..+++.++++++|++.++|.+++.+.... ........++|.+  +|++++++++++|.+.++.   .+.
T Consensus       268 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~-~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~  344 (600)
T PRK08279        268 TLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQP-PKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEF  344 (600)
T ss_pred             EEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCC-CCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeee
Confidence            999999999999999999999999999999999998875 4444445677764  4778999999999999864   334


Q ss_pred             ccccccC
Q 045351          332 QLCLEFG  338 (349)
Q Consensus       332 ~~~~~~G  338 (349)
                      |+++|.|
T Consensus       345 YG~tE~~  351 (600)
T PRK08279        345 YAASEGN  351 (600)
T ss_pred             ecccccc
Confidence            5566654

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.5e-38  Score=307.24  Aligned_cols=300  Identities=20%  Similarity=0.240  Sum_probs=233.9

Q ss_pred             cchh-hhhhcccCCCCCCCCCeEEEeCC----CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHH
Q 045351           28 TSVT-SYVFSLLESHAPPPDTTALIDTA----SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYL  102 (349)
Q Consensus        28 ~tl~-~~l~~~~~~~~~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~l  102 (349)
                      .|+. +.|...+  +.+ |+++|+++..    ..+.+||+||++++.++|+.|++ .|+++||+|+++++|++++++++|
T Consensus        66 ~n~~~~~l~~~~--~~~-p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~l  141 (637)
T PRK00174         66 LNVSYNCLDRHL--KTR-GDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKS-LGVKKGDRVAIYMPMIPEAAVAML  141 (637)
T ss_pred             eEHHHHHHHHhh--ccC-CCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3443 4566677  778 9999999742    23689999999999999999998 999999999999999999999999


Q ss_pred             HHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc---------cc----cc-Cc-ceEEeCCCC--------
Q 045351          103 SLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK---------IP----QL-KY-GTVLLDSPE--------  159 (349)
Q Consensus       103 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~---------~~----~~-~~-~~~~~~~~~--------  159 (349)
                      ||+++|++++|+++..+.+++.++++.++++++|+++.....         +.    .. .. .++..+...        
T Consensus       142 A~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (637)
T PRK00174        142 ACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEG  221 (637)
T ss_pred             HHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCC
Confidence            999999999999999999999999999999999997654311         00    00 11 122222111        


Q ss_pred             ----ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhh-hhccccCCCCCcEEEEe
Q 045351          160 ----FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG-GHAVRAARSRPAVVLCT  234 (349)
Q Consensus       160 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~l~~  234 (349)
                          +.++...       ...........++++++|+|||||||.||||+++|++++..... ....++ +.+++++++.
T Consensus       222 ~~~~~~~~~~~-------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~-~~~~d~~~~~  293 (637)
T PRK00174        222 RDLWWHELVAG-------ASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFD-YKDGDVYWCT  293 (637)
T ss_pred             CcccHHHHHhh-------cCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccC-CCCCcEEEEc
Confidence                0000000       01111122456789999999999999999999999998765543 333344 6788999999


Q ss_pred             cChhhHhhH-HHHHhhhhcCCEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCC--CCCCCCcchhee
Q 045351          235 VPYFHSYGF-TCCLRSLGMGESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSIEVV  307 (349)
Q Consensus       235 ~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~~~~l~~lr~i  307 (349)
                      .|++|..++ ..++.+|..|+++++.+.    +++..+++.|+++++|++.++|++++.|++.. .  ....++++||.+
T Consensus       294 ~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~i  372 (637)
T PRK00174        294 ADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEG-DEHPKKYDLSSLRLL  372 (637)
T ss_pred             CCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcC-CcccccCCccceeEE
Confidence            999999988 578899999999999752    48999999999999999999999999998864 3  234568899999


Q ss_pred             hccCCCCCHHHHHHHHHHcCC-----cccccccccCce
Q 045351          308 ASGGAHLTLSVIRKYLQLNRT-----VNRQLCLEFGAP  340 (349)
Q Consensus       308 ~~gG~~l~~~~~~~~~~~~~~-----~~~~~~~~~G~~  340 (349)
                      ++||+++++++++++.+.++.     .+.|+.||.|..
T Consensus       373 ~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~  410 (637)
T PRK00174        373 GSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGI  410 (637)
T ss_pred             EEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCc
Confidence            999999999999999988753     344556666543

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.1e-38  Score=303.14  Aligned_cols=304  Identities=20%  Similarity=0.205  Sum_probs=241.6

Q ss_pred             cchh-hhhhcccCCC-CCCCCCeEEEeCC--CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHH
Q 045351           28 TSVT-SYVFSLLESH-APPPDTTALIDTA--SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS  103 (349)
Q Consensus        28 ~tl~-~~l~~~~~~~-~~~~~~~ai~~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA  103 (349)
                      .++. +.+...+  . .+ |+++|+++.+  ..+.+||+||.+++.++|+.|.+ .|+++||+|+++++|++++++++||
T Consensus        42 ~~~~~~~~~~~~--~~~~-~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~la  117 (570)
T PRK04319         42 VNIAYEAIDRHA--DGGR-KDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-LGVEKGDRVFIFMPRIPELYFALLG  117 (570)
T ss_pred             eeHHHHHHHHhh--ccCC-CCceEEEEECCCCceeecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHH
Confidence            4544 5666666  4 57 9999998752  34789999999999999999998 9999999999999999999999999


Q ss_pred             HHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc--c-Cc-ceEEeCCCCc-----cccccccCCCCCCC
Q 045351          104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ--L-KY-GTVLLDSPEF-----EPLSATDSLDYYDD  174 (349)
Q Consensus       104 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~--~-~~-~~~~~~~~~~-----~~~~~~~~~~~~~~  174 (349)
                      |+++|++++|+++..+.+++.++++.+++++++++.........  . .. .++.++....     .++......    .
T Consensus       118 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  193 (570)
T PRK04319        118 ALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQ----A  193 (570)
T ss_pred             HHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhh----c
Confidence            99999999999999999999999999999999998765443321  1 11 2333332110     000000000    0


Q ss_pred             CccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcC
Q 045351          175 DEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMG  253 (349)
Q Consensus       175 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G  253 (349)
                      ..........++++++++|||||||.||||.++|++++..+......++ +.+++++++..|++|.+|+ ..++.++..|
T Consensus       194 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G  272 (570)
T PRK04319        194 SDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLD-LHEDDVYWCTADPGWVTGTSYGIFAPWLNG  272 (570)
T ss_pred             CCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcC-CCCCceEEecCChHHhhCchHHHHHHHhcC
Confidence            1111122346789999999999999999999999999988877777776 6889999999999999987 6788999999


Q ss_pred             CEEEEcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCC-CCCCCCCcchheehccCCCCCHHHHHHHHHHcC--Cc
Q 045351          254 ESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGG-TMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TV  329 (349)
Q Consensus       254 ~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~-~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~  329 (349)
                      +++++.. .+++..+++.|+++++|+++++|.+++.|.+... .....++++||.+++||+++++++.+++.+.++  ..
T Consensus       273 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~  352 (570)
T PRK04319        273 ATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIH  352 (570)
T ss_pred             ceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeE
Confidence            9999885 6899999999999999999999999999987640 134566889999999999999999999999874  33


Q ss_pred             ccccccccCce
Q 045351          330 NRQLCLEFGAP  340 (349)
Q Consensus       330 ~~~~~~~~G~~  340 (349)
                      +.|+++|.|..
T Consensus       353 ~~YG~tE~~~~  363 (570)
T PRK04319        353 DNWWMTETGGI  363 (570)
T ss_pred             eceeecccCCE
Confidence            44566776643

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-38  Score=309.69  Aligned_cols=302  Identities=22%  Similarity=0.263  Sum_probs=230.6

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCC--C--ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTAS--R--HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS  103 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~--~--~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA  103 (349)
                      .|+.+.|...+  +.+ |+++|+++.+.  +  +.+||+||.++++++|++|.+ .|+++||+|+++++|+++|+++++|
T Consensus        49 ~~l~~~l~~~a--~~~-pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA  124 (624)
T PRK12582         49 RSIPHLLAKWA--AEA-PDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLD-LGLDPGRPVMILSGNSIEHALMTLA  124 (624)
T ss_pred             cCHHHHHHHHH--HHC-CCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHHH
Confidence            58999999999  899 99999987531  1  689999999999999999998 9999999999999999999999999


Q ss_pred             HHhcCCeEecCCCCCCH-----HHHHHHHhhcCCeEEEEcCcc--ccccc---ccCcceEEeCCCC-------ccccccc
Q 045351          104 LFSLGVVVSPCNPSCTI-----PEILRQIHLSKPVIAFATHDT--AHKIP---QLKYGTVLLDSPE-------FEPLSAT  166 (349)
Q Consensus       104 ~~~~G~~~v~i~~~~~~-----~~l~~~l~~~~~~~i~~~~~~--~~~~~---~~~~~~~~~~~~~-------~~~~~~~  166 (349)
                      |+++|++++|+++.++.     +++.++++.++++++|+++..  ...+.   ....+++..+...       +.++...
T Consensus       125 ~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  204 (624)
T PRK12582        125 AMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFADLAAT  204 (624)
T ss_pred             HHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCcccccccHHHHhhc
Confidence            99999999999999875     899999999999999997641  11111   1122333333211       1111111


Q ss_pred             cCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCC---CcEEEEecChhhHhhH
Q 045351          167 DSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSR---PAVVLCTVPYFHSYGF  243 (349)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~---~~~~l~~~p~~~~~g~  243 (349)
                      ...    ...........++++++|+|||||||.||||++||+++...+......+. ...   .++++..+|++|.+|+
T Consensus       205 ~~~----~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~~~~~~~l~~lPl~h~~g~  279 (624)
T PRK12582        205 PPT----AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP-REPDPPPPVSLDWMPWNHTMGG  279 (624)
T ss_pred             CCc----chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhcc-ccCCCCCceEEEechHHHHHhH
Confidence            000    00001112345789999999999999999999999999987766544433 222   5799999999999998


Q ss_pred             -HHHHhhhhcCCEEEEcC-CCCH---HHHHHHHHhhcccEEEechHHHHHHHhcCCCC----CCCCCcchheehccCCCC
Q 045351          244 -TCCLRSLGMGESLVCMG-KFDF---GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM----DGYDLSSIEVVASGGAHL  314 (349)
Q Consensus       244 -~~~~~~l~~G~~~v~~~-~~~~---~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~----~~~~l~~lr~i~~gG~~l  314 (349)
                       ..++.++..|+++++.+ .+++   ..+++.++++++|+++++|.+++.|.+.. ..    ...++++||.+++||+++
T Consensus       280 ~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~-~~~~~~~~~~~~slr~i~~gGa~l  358 (624)
T PRK12582        280 NANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAM-EKDDALRRSFFKNLRLMAYGGATL  358 (624)
T ss_pred             HHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHH-hhCHHHHHHHhhheeEEEecCCCC
Confidence             55668899999999975 3443   45677889999999999999999987643 21    224578999999999999


Q ss_pred             CHHHHHHHHHHc--------CCcccccccccCc
Q 045351          315 TLSVIRKYLQLN--------RTVNRQLCLEFGA  339 (349)
Q Consensus       315 ~~~~~~~~~~~~--------~~~~~~~~~~~G~  339 (349)
                      ++++.+++.+.+        +..+.|++||.|.
T Consensus       359 ~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~  391 (624)
T PRK12582        359 SDDLYERMQALAVRTTGHRIPFYTGYGATETAP  391 (624)
T ss_pred             CHHHHHHHHHHHHhhcCCCceEEeccccccccc
Confidence            999999998863        2334456677654

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-38  Score=298.66  Aligned_cols=299  Identities=20%  Similarity=0.217  Sum_probs=244.8

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +++.+.+...+  +.. |+++|+++.  ++.+||.||.+++.++|..|.+ .|+++|++|+++++|+.++++++|||+++
T Consensus         2 ~~~~~~~~~~~--~~~-~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~~   75 (497)
T PRK06145          2 FNLSASIAFHA--RRT-PDRAALVYR--DQEISYAEFHQRILQAAGMLHA-RGIGQGDVVALLMKNSAAFLELAFAASYL   75 (497)
T ss_pred             ccHHHHHHHHH--HHC-CCceEEEEC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            57889999999  899 999999987  7999999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |++++|+++..+.+++.++++.+++++++++++....... ....+.++.............    ...........+++
T Consensus        76 G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  150 (497)
T PRK06145         76 GAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-ETPKIVIDAAAQADSRRLAQG----GLEIPPQAAVAPTD  150 (497)
T ss_pred             CcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-ccceEEecCcccchhHHHhcc----CCCCCCCCCCCccc
Confidence            9999999999999999999999999999998765433221 112222221100000000000    00011112356789


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHHH
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGR  266 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~  266 (349)
                      +++++|||||||.||+|.+||+++..........++ +..+++++...|++|.+++ ...+.++..|+++++.+.+++..
T Consensus       151 ~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  229 (497)
T PRK06145        151 LVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALG-LTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEA  229 (497)
T ss_pred             eEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhC-CCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHH
Confidence            999999999999999999999999877665555566 6889999999999999999 55678899999999999999999


Q ss_pred             HHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccCc
Q 045351          267 MLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       267 ~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                      +++.++++++|++.++|.++..|+... .....+++++|.+++||++++.++++++.+.|+..   +.|+.+|.|.
T Consensus       230 ~~~~i~~~~~t~~~~~P~~~~~ll~~~-~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~  304 (497)
T PRK06145        230 VLAAIERHRLTCAWMAPVMLSRVLTVP-DRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCS  304 (497)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHcCC-CccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCC
Confidence            999999999999999999999999876 55666788999999999999999999999998643   3345566554

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-38  Score=301.53  Aligned_cols=296  Identities=24%  Similarity=0.270  Sum_probs=249.5

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|...+  +.+ |+++|+.+.  ++.+||+||++++.++|+.|.+ .|+++|++|+++++|+.+++++++||+++
T Consensus         6 ~~l~~~l~~~~--~~~-p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~g~~~~~~V~l~~~~~~~~~~~~la~~~~   79 (521)
T PRK06187          6 LTIGRILRHGA--RKH-PDKEAVYFD--GRRTTYAELDERVNRLANALRA-LGVKKGDRVAVFDWNSHEYLEAYFAVPKI   79 (521)
T ss_pred             CCHHHHHHHHH--HHC-CCceEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            78999999999  999 999999997  6779999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccC-----c-ceEEeCCCC----------ccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK-----Y-GTVLLDSPE----------FEPLSATDSLDY  171 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-----~-~~~~~~~~~----------~~~~~~~~~~~~  171 (349)
                      |++++|+++..+.+++..+++.+++++++++.+..+.+.+..     . .++..+...          +.++...     
T Consensus        80 G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  154 (521)
T PRK06187         80 GAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAA-----  154 (521)
T ss_pred             CeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhc-----
Confidence            999999999999999999999999999999987655443311     1 233322211          1111111     


Q ss_pred             CCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhh
Q 045351          172 YDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLG  251 (349)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~  251 (349)
                        ............+++++++|||||||.||+|.+||+++..........++ +..++++++..|++|.+++...+.++.
T Consensus       155 --~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~l~  231 (521)
T PRK06187        155 --ASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLK-LSRDDVYLVIVPMFHVHAWGLPYLALM  231 (521)
T ss_pred             --CCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhC-CCCCCEEEEeCCchHHhhHHHHHHHHH
Confidence              11111123456688999999999999999999999999988888777777 789999999999999999977677999


Q ss_pred             cCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--Cc
Q 045351          252 MGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TV  329 (349)
Q Consensus       252 ~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~  329 (349)
                      .|+++++++.+++..+++.++++++|.+.++|.+++.|.... .....+++++|.+++||++++.++++.+.+.++  ..
T Consensus       232 ~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~-~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~  310 (521)
T PRK06187        232 AGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAP-RAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLV  310 (521)
T ss_pred             hCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCc-CCCccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchh
Confidence            999999998889999999999999999999999999999887 666677899999999999999999999999873  23


Q ss_pred             ccccccccC
Q 045351          330 NRQLCLEFG  338 (349)
Q Consensus       330 ~~~~~~~~G  338 (349)
                      +.|+.+|.|
T Consensus       311 ~~YG~tE~~  319 (521)
T PRK06187        311 QGYGMTETS  319 (521)
T ss_pred             eeeccCccC
Confidence            334556654

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.8e-38  Score=299.99  Aligned_cols=293  Identities=20%  Similarity=0.243  Sum_probs=242.6

Q ss_pred             chhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcC
Q 045351           29 SVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLG  108 (349)
Q Consensus        29 tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G  108 (349)
                      ++.+.+...+  +.+ |+++|+.+.  ++++||++|.+++.++|+.|.+ .|+.+||+|+++++|+.+++++++||+++|
T Consensus         1 ~~~~~~~~~~--~~~-p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G   74 (515)
T TIGR03098         1 LLHHLLEDAA--ARL-PDATALVHH--DRTLTYAALSERVLALASGLRG-LGLARGERVAIYLDKRLETVTAMFGAALAG   74 (515)
T ss_pred             CHHHHHHHHH--HHC-CCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence            3678888888  889 999999987  7899999999999999999998 999999999999999999999999999999


Q ss_pred             CeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----C-cceEEeCCCC-----------ccccccccCCCC
Q 045351          109 VVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----K-YGTVLLDSPE-----------FEPLSATDSLDY  171 (349)
Q Consensus       109 ~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~-~~~~~~~~~~-----------~~~~~~~~~~~~  171 (349)
                      ++++|+++..+.+++..+++.+++++++++....+.+...     . ..++.++...           +..+...     
T Consensus        75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  149 (515)
T TIGR03098        75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLAL-----  149 (515)
T ss_pred             EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcc-----
Confidence            9999999999999999999999999999987654433221     1 1233333211           1111100     


Q ss_pred             CCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhh
Q 045351          172 YDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLG  251 (349)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~  251 (349)
                         ...........+++++++|||||||.||+|.+||+++...+......+. +..++++++.+|++|.+|+..++.++.
T Consensus       150 ---~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~l~  225 (515)
T TIGR03098       150 ---GDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE-NRPDDRLLAVLPLSFDYGFNQLTTAFY  225 (515)
T ss_pred             ---ccccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhC-CCcccEEEEECchhhHhHHHHHHHHHH
Confidence               0011112345578999999999999999999999999988887777776 688999999999999999988899999


Q ss_pred             cCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc--
Q 045351          252 MGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV--  329 (349)
Q Consensus       252 ~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~--  329 (349)
                      .|+++++.+.+++..+++.++++++|++.++|.++..|.+..  ....+++++|.+.+||+++++++++++.+.++..  
T Consensus       226 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~  303 (515)
T TIGR03098       226 VGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLD--WPESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARL  303 (515)
T ss_pred             cCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcc--cCCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeE
Confidence            999999999899999999999999999999999999998753  3334678999999999999999999999998543  


Q ss_pred             -ccccccccC
Q 045351          330 -NRQLCLEFG  338 (349)
Q Consensus       330 -~~~~~~~~G  338 (349)
                       ..|+++|.+
T Consensus       304 ~~~YG~tE~~  313 (515)
T TIGR03098       304 FLMYGLTEAF  313 (515)
T ss_pred             eeeecccccc
Confidence             334455543

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=6.1e-38  Score=299.28  Aligned_cols=288  Identities=19%  Similarity=0.209  Sum_probs=239.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.+...+  +.+ |+++|++++  ++.+||+||.++++++|..|.+ .|+++|++|+++++|+++++++++||+++
T Consensus        23 ~~l~~~~~~~a--~~~-p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~~~~   96 (527)
T TIGR02275        23 KPLTDILRDQA--ARY-PDAIAIICG--NRQWSYRELDQRADNLAAGLTK-LGIGQGDTAVVQLPNIAEFYIVFFALLKL   96 (527)
T ss_pred             CcHHHHHHHHH--HHC-CCceEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence            57999999999  889 999999987  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc--------ccc-c-Ccc-eEEeCCCC-ccccccccCCCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK--------IPQ-L-KYG-TVLLDSPE-FEPLSATDSLDYYDDD  175 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~--------~~~-~-~~~-~~~~~~~~-~~~~~~~~~~~~~~~~  175 (349)
                      |++++++++..+.+++.++++.++++++++++.....        +.. . ... ++...... ..........    ..
T Consensus        97 G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  172 (527)
T TIGR02275        97 GIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLES----PA  172 (527)
T ss_pred             CeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhC----cC
Confidence            9999999999999999999999999999998653211        100 0 111 11111110 0000000000    00


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHH--HHHhhhhcC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT--CCLRSLGMG  253 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~--~~~~~l~~G  253 (349)
                      .........++++++++|||||||.||+|.+||+++..++......+. +..++++++.+|++|.+++.  .++.++..|
T Consensus       173 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G  251 (527)
T TIGR02275       173 EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICW-LTQQTRYLCALPAAHNYPLSSPGALGVFYAG  251 (527)
T ss_pred             ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcC-CCcCCEEEECCChHhhhhhhHHHHHHHHhcC
Confidence            011122456789999999999999999999999999998888777776 68899999999999999984  578999999


Q ss_pred             CEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC
Q 045351          254 ESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR  327 (349)
Q Consensus       254 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  327 (349)
                      +++++.+.+++..+++.++++++|++.++|.+++.+.+.. .....+++++|.+++||++++.++.+++.+.++
T Consensus       252 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g  324 (527)
T TIGR02275       252 GCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAA-SKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFG  324 (527)
T ss_pred             CeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCc-cccCCCccceEEEEEcCCCCCHHHHHHHHHHhC
Confidence            9999998899999999999999999999999999998876 666677899999999999999999999999884

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.4e-38  Score=305.58  Aligned_cols=310  Identities=18%  Similarity=0.216  Sum_probs=235.5

Q ss_pred             cch-hhhhhcccCCCCCCCCCeEEEeCC----CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHH
Q 045351           28 TSV-TSYVFSLLESHAPPPDTTALIDTA----SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYL  102 (349)
Q Consensus        28 ~tl-~~~l~~~~~~~~~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~l  102 (349)
                      .|+ .+.+...+  ... |+++|+++..    ..+.+||+||.+++.++|+.|++ .|+++||+|+++++|++++++++|
T Consensus        52 ~n~~~~~l~~~~--~~~-p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~l  127 (629)
T PRK10524         52 TNLCHNAVDRHL--AKR-PEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRS-LGVQRGDRVLIYMPMIAEAAFAML  127 (629)
T ss_pred             eeHHHHHHHHhh--ccC-CCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHH
Confidence            454 45566667  778 9999998631    24789999999999999999998 999999999999999999999999


Q ss_pred             HHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc---------ccc-------ccCcceEEeCCCCcc-cccc
Q 045351          103 SLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH---------KIP-------QLKYGTVLLDSPEFE-PLSA  165 (349)
Q Consensus       103 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~-~~~~  165 (349)
                      ||+++|++++|+++..+.+++.++++.++++++|+++....         .+.       .....++.++..... ....
T Consensus       128 A~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~  207 (629)
T PRK10524        128 ACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVA  207 (629)
T ss_pred             HHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCccc
Confidence            99999999999999999999999999999999999764211         110       011223333321000 0000


Q ss_pred             ccCCCCC---CC-C-ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhh-hhccccCCCCCcEEEEecChhh
Q 045351          166 TDSLDYY---DD-D-EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG-GHAVRAARSRPAVVLCTVPYFH  239 (349)
Q Consensus       166 ~~~~~~~---~~-~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~l~~~p~~~  239 (349)
                      .....+.   .. . .........++++++|+|||||||.||||+++|.+++..... ....++ +.+++++++..|+.|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~  286 (629)
T PRK10524        208 GRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFG-GKAGETFFCASDIGW  286 (629)
T ss_pred             CCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcC-CCCCCEEEEcCCCCe
Confidence            0000000   00 0 001111346789999999999999999999999998654433 333444 678899999999999


Q ss_pred             HhhH-HHHHhhhhcCCEEEEcC----CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCC--CCCCCCcchheehccCC
Q 045351          240 SYGF-TCCLRSLGMGESLVCMG----KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSIEVVASGGA  312 (349)
Q Consensus       240 ~~g~-~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~~~~l~~lr~i~~gG~  312 (349)
                      ..+. ..++.+|+.|+++++.+    ..++..+++.++++++|++.++|++++.|.+.. .  ....++++||.+++||+
T Consensus       287 ~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~l~~lr~i~~~Ge  365 (629)
T PRK10524        287 VVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQD-PALLRKHDLSSLRALFLAGE  365 (629)
T ss_pred             eccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcC-cccccccChhheeEEEEeCC
Confidence            9887 67889999999999885    347899999999999999999999999988764 2  34567899999999999


Q ss_pred             CCCHHHHHHHHHHcC--CcccccccccCceeee
Q 045351          313 HLTLSVIRKYLQLNR--TVNRQLCLEFGAPIIS  343 (349)
Q Consensus       313 ~l~~~~~~~~~~~~~--~~~~~~~~~~G~~~i~  343 (349)
                      ++++++.+++.+.++  ..+.|+.+|.|.++++
T Consensus       366 ~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  398 (629)
T PRK10524        366 PLDEPTASWISEALGVPVIDNYWQTETGWPILA  398 (629)
T ss_pred             CCCHHHHHHHHHhcCCCeEeccccccccchhhc
Confidence            999999999998884  3344567777654443

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.1e-38  Score=310.30  Aligned_cols=302  Identities=17%  Similarity=0.158  Sum_probs=230.7

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeC----------CCC-----------ceeeHHHHHHHHHHHHHHHhhhcCCCCCCE
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDT----------ASR-----------HRILYPDLTLRIKTLAYSLKTKYKLSKYDV   86 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~----------~~~-----------~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~   86 (349)
                      .|+.++|...+  +.+ ||++|+...          .++           +++||+|+.++++++|+.|.+ +|+++||+
T Consensus        58 ~t~~~l~~~~~--~~~-pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-lG~~~gd~  133 (696)
T PLN02387         58 TTLAALFEQSC--KKY-SDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA-LGHNKEER  133 (696)
T ss_pred             CCHHHHHHHHH--HHC-CCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCCE
Confidence            78999999999  999 999999431          012           349999999999999999998 99999999


Q ss_pred             EEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----C-cceEEeCCCCc
Q 045351           87 AFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----K-YGTVLLDSPEF  160 (349)
Q Consensus        87 V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~-~~~~~~~~~~~  160 (349)
                      |+|+++|+++|+++++||+++|++++|+++..+.+++.++++.++++++|++.+....+...     . ..++.++....
T Consensus       134 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~  213 (696)
T PLN02387        134 VAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGV  213 (696)
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCc
Confidence            99999999999999999999999999999999999999999999999999987654443321     1 12444443211


Q ss_pred             c-----------------ccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc
Q 045351          161 E-----------------PLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA  223 (349)
Q Consensus       161 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~  223 (349)
                      .                 ++....      ...........++|+++|+|||||||.||||++||++++..+......+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~  287 (696)
T PLN02387        214 DSDSSLSGSSNWTVSSFSEVEKLG------KENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVP  287 (696)
T ss_pred             hhhhhhhccCCcEEEEHHHHHHhh------ccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcC
Confidence            0                 000000      00011122346799999999999999999999999999998877655542


Q ss_pred             CCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCC------C--HHHHHHHHHhhcccEEEechHHHHHHHhcCCC
Q 045351          224 ARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKF------D--FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT  295 (349)
Q Consensus       224 ~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~------~--~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~  295 (349)
                      .+.++|++++.+|++|.+++...+..+..|+++.+....      +  +..++..++++++|++.++|.++++|.+.. .
T Consensus       288 ~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~-~  366 (696)
T PLN02387        288 KLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGV-R  366 (696)
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHH-H
Confidence            267899999999999999997666677888887765432      1  234567899999999999999999886531 0


Q ss_pred             CC-------------------------------C---------------CCC-cchheehccCCCCCHHHHHHHHHHcC-
Q 045351          296 MD-------------------------------G---------------YDL-SSIEVVASGGAHLTLSVIRKYLQLNR-  327 (349)
Q Consensus       296 ~~-------------------------------~---------------~~l-~~lr~i~~gG~~l~~~~~~~~~~~~~-  327 (349)
                      .+                               .               ..+ +++|.+++||+++++++.+.+...++ 
T Consensus       367 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~  446 (696)
T PLN02387        367 KKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGA  446 (696)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            00                               0               001 58999999999999999887777664 


Q ss_pred             -CcccccccccCce
Q 045351          328 -TVNRQLCLEFGAP  340 (349)
Q Consensus       328 -~~~~~~~~~~G~~  340 (349)
                       ..+.|++||.++.
T Consensus       447 ~v~~~YG~TEt~~~  460 (696)
T PLN02387        447 PIGQGYGLTETCAG  460 (696)
T ss_pred             CeeEeechhhcccc
Confidence             3344566776543

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=1.3e-37  Score=297.73  Aligned_cols=303  Identities=18%  Similarity=0.171  Sum_probs=245.0

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      ..++.++|...+  +.+ |+++|+++.  ++.+||+||.+++.++|..|.+ .|+++|++|+++++|+++++++++||++
T Consensus        20 ~~~l~~~l~~~a--~~~-p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~-~gi~~g~~V~v~~~n~~~~~~~~lA~~~   93 (542)
T PRK06155         20 ERTLPAMLARQA--ERY-PDRPLLVFG--GTRWTYAEAARAAAAAAHALAA-AGVKRGDRVALMCGNRIEFLDVFLGCAW   93 (542)
T ss_pred             ccCHHHHHHHHH--HHC-CCCeEEEeC--CccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence            378999999999  999 999999987  7899999999999999999998 9999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccC------cceEEeCCCCccccccccC-CCCCCCCcccc
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK------YGTVLLDSPEFEPLSATDS-LDYYDDDEERV  179 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  179 (349)
                      +|++++|+++..+.+++.++++.+++++++++.+....+....      ..++.++............ ...........
T Consensus        94 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (542)
T PRK06155         94 LGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAP  173 (542)
T ss_pred             hCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhcccCCCCC
Confidence            9999999999999999999999999999999886655443211      1233333211100000000 00000000111


Q ss_pred             ccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEc
Q 045351          180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCM  259 (349)
Q Consensus       180 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~  259 (349)
                      .....++++++|+|||||||.||+|.++|+++..........++ +.+++++++..|++|.+++..++.+++.|+++++.
T Consensus       174 ~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~-~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~  252 (542)
T PRK06155        174 AAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLE-IGADDVLYTTLPLFHTNALNAFFQALLAGATYVLE  252 (542)
T ss_pred             CCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcC-CCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEee
Confidence            22346789999999999999999999999999888777667676 78899999999999999998889999999999999


Q ss_pred             CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--Cccccccccc
Q 045351          260 GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEF  337 (349)
Q Consensus       260 ~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~  337 (349)
                      +++++..+++.|+++++|++.++|.++..|.+.+ .......+++|.++.||  +++++.+++.+.++  ..+.|+.+|.
T Consensus       253 ~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~  329 (542)
T PRK06155        253 PRFSASGFWPAVRRHGATVTYLLGAMVSILLSQP-ARESDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTET  329 (542)
T ss_pred             CCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCc-CccccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeeccccc
Confidence            9999999999999999999999999999998876 55566677899887655  67899999998874  3344556665


Q ss_pred             Cc
Q 045351          338 GA  339 (349)
Q Consensus       338 G~  339 (349)
                      |.
T Consensus       330 ~~  331 (542)
T PRK06155        330 NF  331 (542)
T ss_pred             Cc
Confidence            53

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.6e-37  Score=297.16  Aligned_cols=313  Identities=20%  Similarity=0.241  Sum_probs=249.7

Q ss_pred             CCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchH
Q 045351           18 RPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRV   97 (349)
Q Consensus        18 ~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~   97 (349)
                      ......++  .++.+.|...+  +.+ |+++|+++.+.++.+||+||.++++++|+.|.+ .|+++||+|+++++|++++
T Consensus         8 ~~~~~~~~--~~l~~~l~~~~--~~~-~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~   81 (559)
T PRK08315          8 PTDVPLLE--QTIGQLLDRTA--ARY-PDREALVYRDQGLRWTYREFNEEVDALAKGLLA-LGIEKGDRVGIWAPNVPEW   81 (559)
T ss_pred             CCcCChhh--ccHHHHHHHHH--HHC-CCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHH
Confidence            33334444  79999999999  999 999999987667899999999999999999998 9999999999999999999


Q ss_pred             HHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc-----cc----cc---------------CcceE
Q 045351           98 PVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK-----IP----QL---------------KYGTV  153 (349)
Q Consensus        98 ~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~~----~~---------------~~~~~  153 (349)
                      ++++|||+++|++++|+++..+.+++..+++.++++++++++.....     +.    +.               ...++
T Consensus        82 ~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (559)
T PRK08315         82 VLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVI  161 (559)
T ss_pred             HHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEE
Confidence            99999999999999999999999999999999999999998753211     00    00               00111


Q ss_pred             EeCCC------CccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCC
Q 045351          154 LLDSP------EFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSR  227 (349)
Q Consensus       154 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~  227 (349)
                      ..+..      .+.++...... ..............++++++++|||||||.||+|.+||+++..++......++ +..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~  239 (559)
T PRK08315        162 FLGDEKHPGMLNFDELLALGRA-VDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMK-LTE  239 (559)
T ss_pred             eecccCCcccccHHHHHhhccc-cccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcC-CCC
Confidence            11111      11111100000 00000111122356788999999999999999999999999998888777777 789


Q ss_pred             CcEEEEecChhhHhhH-HHHHhhhhcCCEEEEc-CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchh
Q 045351          228 PAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIE  305 (349)
Q Consensus       228 ~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr  305 (349)
                      +++++...|++|.+|+ ..++.++..|+++++. ..+++..+++.++++++|++.++|.++..++... .....++++||
T Consensus       240 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~-~~~~~~~~~lr  318 (559)
T PRK08315        240 EDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHP-DFARFDLSSLR  318 (559)
T ss_pred             CceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCc-ccCCCCchhhh
Confidence            9999999999999998 6788999999999854 5789999999999999999999999999998876 55666789999


Q ss_pred             eehccCCCCCHHHHHHHHHHcCCc---ccccccccCc
Q 045351          306 VVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       306 ~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                      .+++||++++.++++++.+.++..   +.|+.+|.|.
T Consensus       319 ~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~  355 (559)
T PRK08315        319 TGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSP  355 (559)
T ss_pred             eeEecCCCCCHHHHHHHHHHcCCcceeEEEccccccc
Confidence            999999999999999999988643   3455666543

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4.6e-38  Score=301.84  Aligned_cols=293  Identities=20%  Similarity=0.276  Sum_probs=234.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCC--------ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASR--------HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPV   99 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~--------~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~   99 (349)
                      .|+.+.+...+  +++ |+++|+++.+.+        +.+||+||.++++++|++|.+ .|+++||+|+++++|+.++++
T Consensus         6 ~~~~~~l~~~a--~~~-p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~g~~~gd~V~~~~~n~~~~~~   81 (552)
T PRK09274          6 ANIARHLPRAA--QER-PDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNA-AGIGRGMRAVLMVTPSLEFFA   81 (552)
T ss_pred             hhHHHHHHHHH--HhC-CCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCcHHHHH
Confidence            68899999999  889 999999986322        289999999999999999998 999999999999999999999


Q ss_pred             HHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcC--ccccccccc---Cc-ceEEeCCC------Ccccccccc
Q 045351          100 LYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATH--DTAHKIPQL---KY-GTVLLDSP------EFEPLSATD  167 (349)
Q Consensus       100 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~--~~~~~~~~~---~~-~~~~~~~~------~~~~~~~~~  167 (349)
                      +++||+++|++++|+++..+.+++.++++.+++++++++.  .....+...   .. .++.++..      .+.++....
T Consensus        82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  161 (552)
T PRK09274         82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDG  161 (552)
T ss_pred             HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhcccC
Confidence            9999999999999999999999999999999999999865  221111110   11 12222211      111111000


Q ss_pred             CCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHH
Q 045351          168 SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCL  247 (349)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~  247 (349)
                            ...........++++++|+|||||||.||+|++||+++...+......++ +.++++.++..|++|.+++    
T Consensus       162 ------~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~----  230 (552)
T PRK09274        162 ------AAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYG-IEPGEIDLPTFPLFALFGP----  230 (552)
T ss_pred             ------ccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhC-CCCCceeeeccCHHHhhhh----
Confidence                  00111122456789999999999999999999999999998888777777 7889999999999886543    


Q ss_pred             hhhhcCCEEEEcC-------CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHH
Q 045351          248 RSLGMGESLVCMG-------KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIR  320 (349)
Q Consensus       248 ~~l~~G~~~v~~~-------~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~  320 (349)
                         ..|+++++.+       .+++..+++.|+++++|+++++|.+++.|.+.. .....++++||.+++||+++++++.+
T Consensus       231 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~gG~~~~~~~~~  306 (552)
T PRK09274        231 ---ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYG-EANGIKLPSLRRVISAGAPVPIAVIE  306 (552)
T ss_pred             ---hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHh-hhcCCCCchhhEEEecCCcCCHHHHH
Confidence               4588887764       468999999999999999999999999999876 55667889999999999999999999


Q ss_pred             HHHHHcCC----cccccccccCc
Q 045351          321 KYLQLNRT----VNRQLCLEFGA  339 (349)
Q Consensus       321 ~~~~~~~~----~~~~~~~~~G~  339 (349)
                      ++.+.++.    .+.|+++|.|.
T Consensus       307 ~~~~~~~~~~~~~~~YG~TE~~~  329 (552)
T PRK09274        307 RFRAMLPPDAEILTPYGATEALP  329 (552)
T ss_pred             HHHHHcCCCceEEccccccccce
Confidence            99999852    23455666553

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-37  Score=295.79  Aligned_cols=304  Identities=17%  Similarity=0.155  Sum_probs=238.8

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|...+  .++ |+++|+++.++++.+||+||.++++++|+.|.+ .|+++||+|+++++|+.++++++|||+++
T Consensus        16 ~~l~~~l~~~a--~~~-p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~   91 (534)
T PRK05852         16 PRIADLVEVAA--TRL-PEAPALVVTADRIAISYRDLARLVDDLAGQLTR-SGLLPGDRVALRMGSNAEFVVALLAASRA   91 (534)
T ss_pred             ccHHHHHHHHH--HhC-CCCcEEEecCCCCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence            68999999999  889 999999986556789999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc-----cCcceEEeCCCCcc-cccc-ccCCCCCCCCccccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ-----LKYGTVLLDSPEFE-PLSA-TDSLDYYDDDEERVR  180 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~  180 (349)
                      |++++|+++..+.+++.++++.+++++++++.........     ....+......... .... ....... .......
T Consensus        92 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  170 (534)
T PRK05852         92 DLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATE-PTPATST  170 (534)
T ss_pred             CcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccC-CCccccc
Confidence            9999999999999999999999999999987643221111     00111111110000 0000 0000000 0000011


Q ss_pred             cccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEc
Q 045351          181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCM  259 (349)
Q Consensus       181 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~  259 (349)
                      .....++.++++|||||||.||||.++|+++...+......+. +..+|++++..|++|.+|+ ..++.+++.|+++++.
T Consensus       171 ~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~  249 (534)
T PRK05852        171 PEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYR-LSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLP  249 (534)
T ss_pred             cCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhC-CCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeC
Confidence            1223567899999999999999999999999998888877777 7899999999999999999 5678899999998886


Q ss_pred             C--CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCC--CCCCCcchheehccCCCCCHHHHHHHHHHcCCc--cccc
Q 045351          260 G--KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM--DGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV--NRQL  333 (349)
Q Consensus       260 ~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~--~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~--~~~~  333 (349)
                      .  .+++..+++.|+++++|.++++|.++..|.+.. ..  ...+.+++|.+.+||+++++++++.+.+.++..  +.|+
T Consensus       250 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG  328 (534)
T PRK05852        250 ARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERA-ATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFG  328 (534)
T ss_pred             CCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhc-ccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccC
Confidence            4  578999999999999999999999999998865 32  234568999999999999999999999988532  2344


Q ss_pred             ccccC
Q 045351          334 CLEFG  338 (349)
Q Consensus       334 ~~~~G  338 (349)
                      .+|.|
T Consensus       329 ~tE~~  333 (534)
T PRK05852        329 MTEAT  333 (534)
T ss_pred             ccccc
Confidence            55554

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-37  Score=296.78  Aligned_cols=305  Identities=21%  Similarity=0.240  Sum_probs=244.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|...+  +++ |+++|+++.+.++.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus        18 ~~l~~~l~~~~--~~~-p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~~a~~~~   93 (558)
T PRK12583         18 QTIGDAFDATV--ARF-PDREALVVRHQALRYTWRQLADAVDRLARGLLA-LGVQPGDRVGIWAPNCAEWLLTQFATARI   93 (558)
T ss_pred             CcHHHHHHHHH--HHC-CCCeEEEecCCCcEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHHHHHhh
Confidence            68999999999  999 999999987667899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc-----cccc-----------------c-Cc-ceEEeCCCC----
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH-----KIPQ-----------------L-KY-GTVLLDSPE----  159 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~-----------------~-~~-~~~~~~~~~----  159 (349)
                      |++++++++..+.+++.++++.++++++++++....     .+..                 . .. ..+..+...    
T Consensus        94 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (558)
T PRK12583         94 GAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGF  173 (558)
T ss_pred             CCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCccc
Confidence            999999999999999999999999999999764321     0000                 0 00 011111100    


Q ss_pred             --ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecCh
Q 045351          160 --FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPY  237 (349)
Q Consensus       160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~  237 (349)
                        +......... ..............+++.++++|||||||.||+|.++|+++..++......++ +..++++++..|+
T Consensus       174 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~~~~~p~  251 (558)
T PRK12583        174 LAWHELQARGET-VSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLG-LTEHDRLCVPVPL  251 (558)
T ss_pred             cchHhhhhcccc-cccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhC-CCCCCeEEEecCc
Confidence              1111100000 00000111122345788999999999999999999999999988887777777 7889999999999


Q ss_pred             hhHhhH-HHHHhhhhcCCEEEEc-CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCC
Q 045351          238 FHSYGF-TCCLRSLGMGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLT  315 (349)
Q Consensus       238 ~~~~g~-~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~  315 (349)
                      +|.+|. ..++.++..|+++++. ..+++..+++.++++++|++.++|.++..++... .....+++++|.+++||++++
T Consensus       252 ~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~-~~~~~~~~~lr~i~~~G~~~~  330 (558)
T PRK12583        252 YHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHP-QRGNFDLSSLRTGIMAGAPCP  330 (558)
T ss_pred             hhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccc-cccCCCchhheEEEecCCCCC
Confidence            999998 6788899999999876 4679999999999999999999999999888775 555677899999999999999


Q ss_pred             HHHHHHHHHHcCCc---ccccccccCc
Q 045351          316 LSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       316 ~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                      +++.+++.+.++..   +.|+.+|.|.
T Consensus       331 ~~~~~~~~~~~~~~~i~~~YG~tE~~~  357 (558)
T PRK12583        331 IEVMRRVMDEMHMAEVQIAYGMTETSP  357 (558)
T ss_pred             HHHHHHHHHHcCCcceecccccccccc
Confidence            99999999998643   3345566553

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.7e-37  Score=297.57  Aligned_cols=304  Identities=22%  Similarity=0.236  Sum_probs=241.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.+++...+  +.+ |+++|+++. +++.+||+||+++++++|+.|.+ .|+++||+|+++++|+.+++++++||+++
T Consensus        23 ~~l~~~~~~~~--~~~-pd~~a~~~~-~~~~~Ty~~l~~~v~~la~~l~~-~G~~~gd~V~i~~~n~~~~~~~~lA~~~~   97 (547)
T PRK06087         23 ASLADYWQQTA--RAM-PDKIAVVDN-HGASYTYSALDHAASRLANWLLA-KGIEPGDRVAFQLPGWCEFTIIYLACLKV   97 (547)
T ss_pred             CCHHHHHHHHH--HHC-CCceEEEcC-CCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            57999999999  889 999999986 35899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc-----ccc----cc-Cc-ceEEeCCCCccccccccCCCCCCCCc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH-----KIP----QL-KY-GTVLLDSPEFEPLSATDSLDYYDDDE  176 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~----~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (349)
                      |++++|+++..+.+++.++++.++++++++++....     .+.    .. .. .++..+....................
T Consensus        98 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (547)
T PRK06087         98 GAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEP  177 (547)
T ss_pred             CcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCc
Confidence            999999999999999999999999999999764311     111    11 11 22222221100000000000000000


Q ss_pred             cccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCE
Q 045351          177 ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGES  255 (349)
Q Consensus       177 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~  255 (349)
                      .........+++++|+|||||||.||+|.++|.++..........++ +.+++++++..|++|.+|+ ..++.+++.|++
T Consensus       178 ~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~  256 (547)
T PRK06087        178 LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLN-LTWQDVFMMPAPLGHATGFLHGVTAPFLIGAR  256 (547)
T ss_pred             ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcC-CCCCCeEEEecchHHHHHHHHHHHHHHhcCCE
Confidence            01122356789999999999999999999999999988877776666 6889999999999999998 578889999999


Q ss_pred             EEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc-CCcccccc
Q 045351          256 LVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLC  334 (349)
Q Consensus       256 ~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~  334 (349)
                      +++.+.+++..+++.+++++++++..+|.++..+++.. .....+++++|.+++||+++++++.+.+.+.. +..+.|+.
T Consensus       257 ~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~-~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~  335 (547)
T PRK06087        257 SVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLL-EKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGS  335 (547)
T ss_pred             EEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhcc-ccCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEecc
Confidence            99999999999999999999999998888888888765 55566788999999999999999999877642 23344556


Q ss_pred             cccC
Q 045351          335 LEFG  338 (349)
Q Consensus       335 ~~~G  338 (349)
                      +|.|
T Consensus       336 TE~~  339 (547)
T PRK06087        336 TESS  339 (547)
T ss_pred             cccC
Confidence            6655

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-37  Score=297.46  Aligned_cols=296  Identities=23%  Similarity=0.244  Sum_probs=246.6

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.++|...+  +.+ |+++|+++.  ++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+.+++++++||+++
T Consensus        11 ~~l~~~l~~~a--~~~-~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gi~~~~~V~l~~~~~~~~~~~~~a~~~~   84 (523)
T PRK08316         11 QTIGDILRRSA--RRY-PDKTALVFG--DRSWTYAELDAAVNRVAAALLD-LGLKKGDRVAALGHNSDAYALLWLACARA   84 (523)
T ss_pred             CCHHHHHHHHH--HHC-CCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            57999999999  899 999999987  7999999999999999999999 89999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc----CcceEEe-CC-------C---CccccccccCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL----KYGTVLL-DS-------P---EFEPLSATDSLDYY  172 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~-~~-------~---~~~~~~~~~~~~~~  172 (349)
                      |++++|+++..+.+++.++++.+++++++++.+....+...    ....+.. ..       .   .+.++...      
T Consensus        85 G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  158 (523)
T PRK08316         85 GAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEA------  158 (523)
T ss_pred             CcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhc------
Confidence            99999999999999999999999999999998765444321    0010000 00       0   00011100      


Q ss_pred             CCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhh
Q 045351          173 DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLG  251 (349)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~  251 (349)
                       ............+++++++|||||||.||+|.+||+++..........++ +.+++++++.+|++|..|+ ..++.++.
T Consensus       159 -~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~h~~g~~~~~~~~~~  236 (523)
T PRK08316        159 -GSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGD-MSADDIPLHALPLYHCAQLDVFLGPYLY  236 (523)
T ss_pred             -CCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhC-CCCCceEEEccCCchhhhHHHHHHHHHh
Confidence             01111233466789999999999999999999999999998887777777 7899999999999999998 45667899


Q ss_pred             cCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc--
Q 045351          252 MGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV--  329 (349)
Q Consensus       252 ~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~--  329 (349)
                      .|+++++.+.+++..+++.++++++|++.++|.++..|.+.. .....+++++|.+++||++++.++.+.+.+.+++.  
T Consensus       237 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~  315 (523)
T PRK08316        237 VGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHP-DFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRF  315 (523)
T ss_pred             cCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCc-ccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCce
Confidence            999999998889999999999999999999999999999886 66677889999999999999999999999988543  


Q ss_pred             -ccccccccC
Q 045351          330 -NRQLCLEFG  338 (349)
Q Consensus       330 -~~~~~~~~G  338 (349)
                       +.|+.+|.|
T Consensus       316 ~~~YG~tE~~  325 (523)
T PRK08316        316 YNCYGQTEIA  325 (523)
T ss_pred             eeeecccccC
Confidence             334455544

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5.8e-38  Score=350.37  Aligned_cols=291  Identities=19%  Similarity=0.204  Sum_probs=249.6

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.++|..++  .++ |+++|+++.  ++.+||+||.++++++|+.|.+ .|+++|++|+|+++|++++++++|||+++
T Consensus      3095 ~~~~~l~~~~a--~~~-p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~vv~~lavl~a 3168 (3956)
T PRK12467       3095 RLVHQLIEAQV--ART-PEAPALVFG--DQQLSYAELNRRANRLAHRLIA-IGVGPDVLVGVAVERSVEMIVALLAVLKA 3168 (3956)
T ss_pred             ccHHHHHHHHH--HhC-CCcceEeeC--CcccCHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence            68999999999  999 999999997  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-CcceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      |++++|+++..+.+++.++++.+++++++++....+.+... ....+.++......           ...........++
T Consensus      3169 Ga~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 3237 (3956)
T PRK12467       3169 GGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNG-----------YSENNPSTRVMGE 3237 (3956)
T ss_pred             CcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecchhhcc-----------cCCCCCcccCCCC
Confidence            99999999999999999999999999999988765544321 22233333211110           1111122346789


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCC--CCH
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGK--FDF  264 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~  264 (349)
                      ++++|+|||||||.||||+++|+++.+.+.+....++ +.++++++...|++|+.++..++.+|+.|+++++.+.  +++
T Consensus      3238 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~ 3316 (3956)
T PRK12467       3238 NLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYE-LDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDP 3316 (3956)
T ss_pred             ceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcC-CCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCH
Confidence            9999999999999999999999999999998888888 7999999999999999999999999999999999975  799


Q ss_pred             HHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccCc
Q 045351          265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       265 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                      ..+++.|+++++|++.++|++++.+.+..   ...++++||.+++||+++++++.++|.+.++..   +.|+.||.+.
T Consensus      3317 ~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~---~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 3391 (3956)
T PRK12467       3317 EELWQAIHAHRISIACFPPAYLQQFAEDA---GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVV 3391 (3956)
T ss_pred             HHHHHHHHHcCCEEEEcCHHHHHHHHhcc---cccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEe
Confidence            99999999999999999999999998753   234678899999999999999999999988643   4455566543

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=3.1e-37  Score=295.13  Aligned_cols=305  Identities=20%  Similarity=0.224  Sum_probs=244.7

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC----CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA----SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS  103 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA  103 (349)
                      .|+.+.+...+  ..+ |+++|++..+    .++.+||+||++++.++|+.|.+ .|+++|++|+++++|+.+++++++|
T Consensus        22 ~~~~~~~~~~~--~~~-p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la   97 (538)
T TIGR03208        22 RTINDHFDAAV--ANC-PDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLAR-LGVGRGDVVSFQLPNRWEFTALYLA   97 (538)
T ss_pred             CcHHHHHHHHH--HHC-CCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHH
Confidence            58999999999  889 9999998621    24799999999999999999998 9999999999999999999999999


Q ss_pred             HHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc-----c---cc-c--CcceEEeCCCC---ccccccccCC
Q 045351          104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK-----I---PQ-L--KYGTVLLDSPE---FEPLSATDSL  169 (349)
Q Consensus       104 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-----~---~~-~--~~~~~~~~~~~---~~~~~~~~~~  169 (349)
                      |+++|++++|+++..+.+++.++++.++++++++++.....     .   .. .  ...++..+...   +.........
T Consensus        98 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (538)
T TIGR03208        98 CARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPER  177 (538)
T ss_pred             HHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHHHHhhcccc
Confidence            99999999999999999999999999999999998754211     0   00 1  11233333211   1111111000


Q ss_pred             -CCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHH
Q 045351          170 -DYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCL  247 (349)
Q Consensus       170 -~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~  247 (349)
                       ...............++++++++|||||||.||||+++|+++...+......++ +..++++++.+|++|..|+ ..++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~pl~h~~g~~~~~~  256 (538)
T TIGR03208       178 DDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLE-LGGGDVILMASPMAHQTGFMYGLM  256 (538)
T ss_pred             ccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcC-CCCCCeEEEeCCchhHHHHHHHHH
Confidence             000000001112456789999999999999999999999999998888877777 6889999999999999988 6788


Q ss_pred             hhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC
Q 045351          248 RSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR  327 (349)
Q Consensus       248 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  327 (349)
                      .+++.|+++++.+.+++..+++.++++++|++.++|.++..+.... .....+++++|.+++||+++++++++++.+.++
T Consensus       257 ~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~-~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~  335 (538)
T TIGR03208       257 MPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAV-KESGAPVPSLFTFLCAGAPIPGILVERAWELLG  335 (538)
T ss_pred             HHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhch-hccCCCCCcceEEEEcCCCCCHHHHHHHHHHcC
Confidence            9999999999999899999999999999999999999999998765 444567889999999999999999999999884


Q ss_pred             --CcccccccccC
Q 045351          328 --TVNRQLCLEFG  338 (349)
Q Consensus       328 --~~~~~~~~~~G  338 (349)
                        ..+.|+.+|.|
T Consensus       336 ~~~~~~YG~tE~~  348 (538)
T TIGR03208       336 ALIVSAWGMTENG  348 (538)
T ss_pred             CeEEeeeccCcCC
Confidence              23445556654

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-37  Score=295.11  Aligned_cols=293  Identities=14%  Similarity=0.098  Sum_probs=235.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCC-CCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKL-SKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~-~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      .|+.+.|..++    . |+++|+++.  +..+||.||.++++++|..|.+ .|+ .+||+|+++++|+++++++++||++
T Consensus         3 ~~~~~~l~~~~----~-p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~-~g~~~~~~~V~i~~~n~~~~v~~~lA~~~   74 (540)
T PRK13388          3 DTIAQLLRDRA----G-DDTIAVRYG--DRTWTWREVLAEAAARAAALIA-LADPDRPLHVGVLLGNTPEMLFWLAAAAL   74 (540)
T ss_pred             hhHHHHHHhhc----c-CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCcHHHHHHHHHHh
Confidence            47888887755    6 899999986  7899999999999999999998 999 7999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc---CcceEEeCCCCccccccccCCCCCCCCcccccccc
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL---KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSV  183 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (349)
                      +|++++|+++..+.+++.++++.+++++++++++..+.+.+.   ..+++.++...+.+.....       .........
T Consensus        75 ~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~  147 (540)
T PRK13388         75 GGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPAYAELVAAA-------GALTPHREV  147 (540)
T ss_pred             CCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccchhhhhhhccc-------cCcCCCCCC
Confidence            999999999999999999999999999999987665544332   2233444332222222111       000111235


Q ss_pred             CCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHH-HHHhhhhcCCEEEEcCCC
Q 045351          184 SLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT-CCLRSLGMGESLVCMGKF  262 (349)
Q Consensus       184 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~~  262 (349)
                      .++++++++|||||||.||||.++|+++..........++ +..+++++..+|++|.+++. .++.+|..|+++++.+.+
T Consensus       148 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~  226 (540)
T PRK13388        148 DAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFG-LTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKF  226 (540)
T ss_pred             CCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhC-CCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCC
Confidence            6799999999999999999999999999988877777777 78899999999999999994 445689999999999889


Q ss_pred             CHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--CcccccccccCc
Q 045351          263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEFGA  339 (349)
Q Consensus       263 ~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~G~  339 (349)
                      ++..+++.++++++|++..+|..+..+...+ ........+++.+ + |++++++..+++.+.++  ..+.|+.+|.|.
T Consensus       227 ~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~-~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~  302 (540)
T PRK13388        227 SASGFLDDVRRYGATYFNYVGKPLAYILATP-ERPDDADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAV  302 (540)
T ss_pred             CHHHHHHHHHHhCCeEEEehHHHHHHHHhCC-CCccccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccc
Confidence            9999999999999999999999999998765 4332333456643 3 66778888899988874  334455666553

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.3e-37  Score=325.53  Aligned_cols=290  Identities=18%  Similarity=0.190  Sum_probs=243.4

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|..++  +.+ |+++|+++.  ++.+||+||.++++++|+.|.+ .|+++||+|+++++|+.++++++|||+++
T Consensus       458 ~~l~~~~~~~~--~~~-p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~g~~V~l~~~~~~~~i~~~la~~~~  531 (1296)
T PRK10252        458 TTLSALVAQQA--AKT-PDAPALADA--RYQFSYREMREQVVALANLLRE-RGVKPGDSVAVALPRSVFLTLALHAIVEA  531 (1296)
T ss_pred             CCHHHHHHHHH--HhC-CCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            78999999999  999 999999997  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccC-cceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK-YGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      |++++|+++..+.+++.++++.+++++++++......+.... ......+.     ....        ..........++
T Consensus       532 G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~~~~~~~  598 (1296)
T PRK10252        532 GAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYNA-----PLAP--------QGAAPLQLSQPH  598 (1296)
T ss_pred             CCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCCceeeeccc-----cccc--------ccCCCCCCCCCC
Confidence            999999999999999999999999999999887655443311 11111110     0000        000111123678


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC---CCC
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG---KFD  263 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~---~~~  263 (349)
                      ++++|+|||||||.||||+++|+++.+.+.+....++ +.++++++...|++|..++..++.+|+.|+++++.+   ..+
T Consensus       599 ~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~  677 (1296)
T PRK10252        599 HTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYP-LTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRD  677 (1296)
T ss_pred             CeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcC-CCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCC
Confidence            9999999999999999999999999999998888888 789999999999999999999999999999999985   468


Q ss_pred             HHHHHHHHHhhcccEEEechHHHHHHHhcCCCCC--CCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccccC
Q 045351          264 FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMD--GYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFG  338 (349)
Q Consensus       264 ~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~--~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G  338 (349)
                      +..+++.++++++|++.++|+++..+++.. ...  ...++++|.+++||+++++++.++|.+.++.  .+.|+.||.|
T Consensus       678 ~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~-~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~  755 (1296)
T PRK10252        678 PLAMQQFFAEYGVTTTHFVPSMLAAFVASL-TPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAA  755 (1296)
T ss_pred             HHHHHHHHHHcCCeEEEeCHHHHHHHHhhh-ccccccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhh
Confidence            999999999999999999999999988764 222  2346889999999999999999999987642  2334445544

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-37  Score=294.27  Aligned_cols=302  Identities=20%  Similarity=0.203  Sum_probs=246.6

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.+.|...+  +++ |+++|++++  ++.+||.||.+++.++|+.|.+ .|+++|++|+++++|+++++++++||+++
T Consensus        12 ~~~~~~~~~~~--~~~-~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~~~~V~i~~~~~~~~~~~~la~~~~   85 (524)
T PRK06188         12 ATYGHLLVSAL--KRY-PDRPALVLG--DTRLTYGQLADRISRYIQAFEA-LGLGTGDAVALLSLNRPEVLMAIGAAQLA   85 (524)
T ss_pred             ccHHHHHHHHH--HHC-CCCeEEEEC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            68999999999  889 999999997  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCc-ccccccc----c-Cc-ceEEeCCC-CccccccccCCCCCCCCcccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHD-TAHKIPQ----L-KY-GTVLLDSP-EFEPLSATDSLDYYDDDEERV  179 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~-~~~~~~~----~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  179 (349)
                      |++++|+++..+.+++.++++.++++.+++++. .......    . .. .++.++.. ...+.......    ......
T Consensus        86 G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  161 (524)
T PRK06188         86 GLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAK----FGPAPL  161 (524)
T ss_pred             CCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhc----cCcccc
Confidence            999999999999999999999999999999875 2222111    0 01 12222211 11111111000    011111


Q ss_pred             ccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEc
Q 045351          180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCM  259 (349)
Q Consensus       180 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~  259 (349)
                      .....++++++++|||||||.||+|.++|.++...+......+. +..++++++..|++|.+|+. ++.+++.|+++++.
T Consensus       162 ~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~-~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~  239 (524)
T PRK06188        162 VAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWE-WPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVL  239 (524)
T ss_pred             cccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcC-CCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEc
Confidence            12234567999999999999999999999999998888888777 78999999999999998874 57889999999999


Q ss_pred             CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc--cccccccc
Q 045351          260 GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV--NRQLCLEF  337 (349)
Q Consensus       260 ~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~--~~~~~~~~  337 (349)
                      +.+++..+++.++++++|++.++|.++..|+... .....+++++|.+++||++++++..+.+.+.++..  +.|+.+|.
T Consensus       240 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~  318 (524)
T PRK06188        240 AKFDPAEVLRAIEEQRITATFLVPTMIYALLDHP-DLRTRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEA  318 (524)
T ss_pred             CCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCc-CccCCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCcccc
Confidence            9999999999999999999999999999999887 66667889999999999999999999999888543  33556776


Q ss_pred             Cceee
Q 045351          338 GAPII  342 (349)
Q Consensus       338 G~~~i  342 (349)
                      |..+.
T Consensus       319 ~~~~~  323 (524)
T PRK06188        319 PMVIT  323 (524)
T ss_pred             CCcee
Confidence            54333

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-37  Score=297.69  Aligned_cols=296  Identities=23%  Similarity=0.251  Sum_probs=242.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +|+.+.+...+  +.+ |+++|+++.  ++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus        17 ~n~~~~~~~~a--~~~-~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~~a~~~~   90 (542)
T PRK07786         17 QNWVNQLARHA--LMQ-PDAPALRFL--GNTTTWRELDDRVAALAGALSR-RGVGFGDRVLILMLNRTEFVESVLAANML   90 (542)
T ss_pred             cCHHHHHHHHH--HHC-CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            78999999999  999 999999987  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----Ccc-eEEeCCC------CccccccccCCCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KYG-TVLLDSP------EFEPLSATDSLDYYDDD  175 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~-~~~~~~~------~~~~~~~~~~~~~~~~~  175 (349)
                      |++++|+++..+.+++.++++.+++++++++....+.+...     ... ++..+..      .+.++...       ..
T Consensus        91 G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  163 (542)
T PRK07786         91 GAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAE-------AG  163 (542)
T ss_pred             CeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhc-------cC
Confidence            99999999999999999999999999999987655433221     111 2222211      11111111       01


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCE
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGES  255 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~  255 (349)
                      ..........+++++++|||||||.||+|.+||+++...+......++....++++++..|++|.+|+..++.++..|++
T Consensus       164 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~  243 (542)
T PRK07786        164 PAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAP  243 (542)
T ss_pred             CCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCE
Confidence            11112234567899999999999999999999999998887766666522578899999999999999889999999999


Q ss_pred             EEEcC--CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---c
Q 045351          256 LVCMG--KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---N  330 (349)
Q Consensus       256 ~v~~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~  330 (349)
                      +++.+  .+++..+++.++++++|.++++|.++..|.... .....+ .++|.+++||+++++++++.+.+.+++.   +
T Consensus       244 ~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~  321 (542)
T PRK07786        244 TVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQ-QARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQILA  321 (542)
T ss_pred             EEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCc-ccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEe
Confidence            99874  679999999999999999999999999998875 433333 3699999999999999999999998643   3


Q ss_pred             cccccccC
Q 045351          331 RQLCLEFG  338 (349)
Q Consensus       331 ~~~~~~~G  338 (349)
                      .|+.+|.|
T Consensus       322 ~YG~tE~~  329 (542)
T PRK07786        322 AFGQTEMS  329 (542)
T ss_pred             eecccccc
Confidence            34556654

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-37  Score=294.50  Aligned_cols=291  Identities=17%  Similarity=0.182  Sum_probs=236.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|...+  ..+ |+++|++++  ++.+||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++
T Consensus        35 ~~~~~~~~~~a--~~~-p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~~  108 (516)
T PRK13383         35 TNPYTLLAVTA--ARW-PGRTAIIDD--DGALSYRELQRATESLARRLTR-DGVAPGRAVGVMCRNGRGFVTAVFAVGLL  108 (516)
T ss_pred             CcHHHHHHHHH--HHC-CCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            68999999999  889 999999986  6799999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |++++|+++..+.+++.++++.++++++++++...+.+......+..++.....   ..  .    ..    ..+...++
T Consensus       109 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~----~~----~~p~~~~~  175 (516)
T PRK13383        109 GADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAG---AE--E----SG----GRPAVAAP  175 (516)
T ss_pred             CeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccchhh---hh--c----CC----CCCCCCCC
Confidence            999999999999999999999999999999887655544322223333211100   00  0    00    01123456


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHH--HhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHH
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAA--VAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFG  265 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~--~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~  265 (349)
                      .++++|||||||.||+|.++|......  .......++ +..+++++...|++|.+|+..++.++..|+++++...+++.
T Consensus       176 ~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~  254 (516)
T PRK13383        176 GRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTR-LRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAE  254 (516)
T ss_pred             CcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhc-cCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHH
Confidence            789999999999999999999843211  112223344 57889999999999999998888899999999999889999


Q ss_pred             HHHHHHHhhcccEEEechHHHHHHHhcCCC--CCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccccCc
Q 045351          266 RMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFGA  339 (349)
Q Consensus       266 ~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G~  339 (349)
                      .+++.++++++|.+.++|.++..|.... .  ....+++++|.+++||++++++++++|.+.++.  .+.|+.+|.|.
T Consensus       255 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~  331 (516)
T PRK13383        255 AALAQASLHRADAFTAVPVVLARILELP-PRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGI  331 (516)
T ss_pred             HHHHHHHHhCCcEEEecHHHHHHHHhcc-ccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhccccccccc
Confidence            9999999999999999999999998764 2  123457899999999999999999999998853  34455666653

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-37  Score=305.08  Aligned_cols=289  Identities=16%  Similarity=0.147  Sum_probs=235.0

Q ss_pred             cchhhhhhcccCCCC--CCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHA--PPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLF  105 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~--~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~  105 (349)
                      .|+.++|...+  ..  + ||++|+++.   +.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+
T Consensus         4 ~~~~~~~~~~a--~~~~~-pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~~   76 (705)
T PRK06060          4 GNLAGLLAEQA--SEAGW-YDRPAFYAA---DVVTHGQIHDGAARLGEVLRN-RGLSSGDRVLLCLPDSPDLVQLLLACL   76 (705)
T ss_pred             cCHHHHHHHHH--hhccC-CCceEEEec---CceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            37888888887  64  7 899999874   479999999999999999998 999999999999999999999999999


Q ss_pred             hcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCC
Q 045351          106 SLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSL  185 (349)
Q Consensus       106 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (349)
                      ++|++++|+++..+.+++.++++.+++++++++....+.+...  .++  .   ..........     ..........+
T Consensus        77 ~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~--~---~~~~~~~~~~-----~~~~~~~~~~~  144 (705)
T PRK06060         77 ARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS--RVA--E---AAELMSEAAR-----VAPGGYEPMGG  144 (705)
T ss_pred             HhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc--ccc--h---hhhhhhhccc-----cCCCCCCCCCC
Confidence            9999999999999999999999999999999987654433221  010  0   0011110000     00001123456


Q ss_pred             CCcEEEEeccCCCCCCceeeechhhHHHHHhhhh-ccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcC-CC
Q 045351          186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH-AVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMG-KF  262 (349)
Q Consensus       186 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~-~~  262 (349)
                      +++++++|||||||.||||.++|+++...+.... ..+. +...+++++..|++|.+++ ..++.+|..|+++++.+ .+
T Consensus       145 ~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~  223 (705)
T PRK06060        145 DALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALR-LTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPV  223 (705)
T ss_pred             CCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhC-CCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCC
Confidence            8999999999999999999999999988776653 3455 6788999999999999998 67889999999999986 57


Q ss_pred             CHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccCc
Q 045351          263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       263 ~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                      ++..++..++++++|+++++|.++..+.+.. .  ..++++||.+++||+++++++.+++.+.+++.   +.|+.+|.|.
T Consensus       224 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~-~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~  300 (705)
T PRK06060        224 TPEAAAILSARFGPSVLYGVPNFFARVIDSC-S--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQ  300 (705)
T ss_pred             CHHHHHHHHHhcCCeEEeeHHHHHHHHHHhc-c--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCc
Confidence            8999999999999999999999999998764 2  23578999999999999999999999988643   3455666653

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.2e-37  Score=301.39  Aligned_cols=302  Identities=15%  Similarity=0.113  Sum_probs=228.6

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCC-----CC--ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHH
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTA-----SR--HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPV   99 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~-----~~--~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~   99 (349)
                      ..|+.+.+...+  +.+ |+++|+....     .+  +++||+|+.++++++|+.|.+ .|+++||+|+|+++|+++|++
T Consensus        41 ~~t~~~~~~~~~--~~~-p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~ew~~  116 (660)
T PLN02430         41 ITTAWDIFSKSV--EKY-PDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRA-SGAEPGSRVGIYGSNCPQWIV  116 (660)
T ss_pred             CCCHHHHHHHHH--HhC-CCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHH
Confidence            378999999999  999 9999996421     11  358999999999999999998 999999999999999999999


Q ss_pred             HHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccc-ccccc----c-Cc-ceEEeCCCC-------------
Q 045351          100 LYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA-HKIPQ----L-KY-GTVLLDSPE-------------  159 (349)
Q Consensus       100 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~-~~~~~----~-~~-~~~~~~~~~-------------  159 (349)
                      +++||+++|++++|+++..+.+++.++++.++++++|+++... ..+..    . .. .++.++...             
T Consensus       117 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  196 (660)
T PLN02430        117 AMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVK  196 (660)
T ss_pred             HHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcE
Confidence            9999999999999999999999999999999999999986432 11111    0 11 133333211             


Q ss_pred             ---ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcc---c-cCCCCCcEEE
Q 045351          160 ---FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV---R-AARSRPAVVL  232 (349)
Q Consensus       160 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~-~~~~~~~~~l  232 (349)
                         +.++.....      ..........++++++|+|||||||.||||++||+++...+......   + ..+..+++++
T Consensus       197 ~~~~~~~~~~~~------~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~l  270 (660)
T PLN02430        197 TYSWIDFLHMGK------ENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYL  270 (660)
T ss_pred             EEEHHHHHHhhc------cCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEE
Confidence               001110000      00011123467899999999999999999999999999887664322   1 1256889999


Q ss_pred             EecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcC-------CC----------
Q 045351          233 CTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-------GT----------  295 (349)
Q Consensus       233 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~-------~~----------  295 (349)
                      +.+|++|.++....+.++..|+++++... ++..+++.|+++++|++.++|.+++.+.+..       ..          
T Consensus       271 s~lPl~H~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~  349 (660)
T PLN02430        271 SFLPLAHILDRMIEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALY  349 (660)
T ss_pred             EeCcHHHHHHHHHHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999999666678899999988754 7889999999999999999999998886521       00          


Q ss_pred             ----------------CCCCC----------C-cchheehccCCCCCHHHHHHHHHHcC---CcccccccccCce
Q 045351          296 ----------------MDGYD----------L-SSIEVVASGGAHLTLSVIRKYLQLNR---TVNRQLCLEFGAP  340 (349)
Q Consensus       296 ----------------~~~~~----------l-~~lr~i~~gG~~l~~~~~~~~~~~~~---~~~~~~~~~~G~~  340 (349)
                                      ....+          + +++|.+++||+++++++.+.+ +.++   ..+.|++||.++.
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~-~~~~~~~i~~~YG~TE~~~~  423 (660)
T PLN02430        350 KYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL-RVTSCAFVVQGYGLTETLGP  423 (660)
T ss_pred             HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH-HHhcCCCeeeecchhhhhhc
Confidence                            00000          1 589999999999999986554 4543   2344667776543

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.6e-37  Score=346.83  Aligned_cols=293  Identities=19%  Similarity=0.207  Sum_probs=247.4

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|..++  +.+ |+++|+++.  ++.+||+||.++++++|+.|.+ .|+++|++|+++++|++++++++|||+++
T Consensus      1574 ~~~~~~~~~~a--~~~-p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~~~~V~l~~~~s~~~vv~~lavlka 1647 (3956)
T PRK12467       1574 RLVHQLIEDQA--AAT-PEAVALVFG--EQELTYGELNRRANRLAHRLIA-LGVGPEVLVGIAVERSLEMVVGLLAILKA 1647 (3956)
T ss_pred             ccHHHHHHHHH--HhC-CCCeEEEeC--CcEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCCHHHHHHHHHhhcc
Confidence            68999999999  999 999999987  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-CcceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      |++++|++|..+.+++.++++++++++++++......+... ...++.++...  .....       ...........++
T Consensus      1648 G~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~ 1718 (3956)
T PRK12467       1648 GGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQED--DWLEG-------YSDSNPAVNLAPQ 1718 (3956)
T ss_pred             CceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEecccc--chhcc-------CCCCCCCCCCCCc
Confidence            99999999999999999999999999999987665544321 22333333211  11111       1111122345678


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC---CCC
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG---KFD  263 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~---~~~  263 (349)
                      +.++|+|||||||.||||+++|+++.+.+.+....++ +..+++++...|++|+.+++.++.+|+.|+++++.+   ..+
T Consensus      1719 ~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~ 1797 (3956)
T PRK12467       1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQ-LSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRD 1797 (3956)
T ss_pred             CcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcC-CCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCC
Confidence            9999999999999999999999999999988888887 789999999999999999999999999999999985   358


Q ss_pred             HHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccC
Q 045351          264 FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       264 ~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G  338 (349)
                      +..+++.|+++++|++.++|++++.|.+..  ....++++||.+++||+++++++.++|.+.++..   +.||.||.+
T Consensus      1798 ~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~--~~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t 1873 (3956)
T PRK12467       1798 PEQLIQLIERQQVTTLHFVPSMLQQLLQMD--EQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETA 1873 (3956)
T ss_pred             HHHHHHHHHHcCCeEEECCHHHHHHHHhhc--cccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCE
Confidence            999999999999999999999999998752  2334578999999999999999999999988643   334445543

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.2e-37  Score=306.95  Aligned_cols=301  Identities=15%  Similarity=0.126  Sum_probs=235.5

Q ss_pred             cchhhhhhcccCCCCCCCC-CeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           28 TSVTSYVFSLLESHAPPPD-TTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~-~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      .|+.+.|...+  .++ |+ ++|+.+. ..+.+||+||.++++++|++|.+ . +++||+|+++++|++++++++|||++
T Consensus       204 ~t~~~~l~~~~--~~~-p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~Val~~~n~~e~~~~~lA~~~  277 (718)
T PRK08043        204 ETLYEALLSAQ--YRY-GAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEK-Y-SVEGERIGLMLPNATISAAVIFGASL  277 (718)
T ss_pred             CCHHHHHHHHH--HHh-CCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHH-h-cCCCceEEEEcCCcHHHHHHHHHHHH
Confidence            68999999999  889 87 6888753 24789999999999999999998 6 59999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccc--cc-----CcceEEeCCC-CccccccccCCCCCCCCccc
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIP--QL-----KYGTVLLDSP-EFEPLSATDSLDYYDDDEER  178 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~--~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  178 (349)
                      +|++++|+++..+.+++.++++.+++++++++++..+...  ..     ....+.++.. ....................
T Consensus       278 ~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (718)
T PRK08043        278 RRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKLWIFAHLLMPRL  357 (718)
T ss_pred             cCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHHHHHHHHHhCCcc
Confidence            9999999999999999999999999999999876543211  10     1112222210 00000000000000000000


Q ss_pred             cccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEE
Q 045351          179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLV  257 (349)
Q Consensus       179 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v  257 (349)
                      ......++++++++|||||||.||||++||+++...+......++ +..+|++++.+|++|.+|+ ..++.++..|++++
T Consensus       358 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv  436 (718)
T PRK08043        358 AQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-FTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVF  436 (718)
T ss_pred             ccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhC-CCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEE
Confidence            112346789999999999999999999999999998877776666 7899999999999999998 56789999999999


Q ss_pred             EcCC-CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--Ccccccc
Q 045351          258 CMGK-FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLC  334 (349)
Q Consensus       258 ~~~~-~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~  334 (349)
                      +.+. +++..+++.+.++++|++..+|.++..+.+..   ...++++||.+++||+++++++.+.+.+.++  ..+.|+.
T Consensus       437 ~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~  513 (718)
T PRK08043        437 LYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA---NPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGV  513 (718)
T ss_pred             EeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---CcccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCc
Confidence            8864 67788999999999999999999998876542   3356789999999999999999999999884  2344556


Q ss_pred             cccC
Q 045351          335 LEFG  338 (349)
Q Consensus       335 ~~~G  338 (349)
                      ||.+
T Consensus       514 TE~~  517 (718)
T PRK08043        514 TECA  517 (718)
T ss_pred             cccc
Confidence            6654

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=3.7e-37  Score=292.34  Aligned_cols=292  Identities=17%  Similarity=0.174  Sum_probs=243.6

Q ss_pred             chhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcC
Q 045351           29 SVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLG  108 (349)
Q Consensus        29 tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G  108 (349)
                      ++.+.+...+  ... |+++|+.+.  ++.+||+||.+++.++|+.|.+ .|+++|++|+++++|+.+++++++||+++|
T Consensus         1 ~~~~~l~~~a--~~~-p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~G   74 (502)
T TIGR01734         1 KLIEAIQAFA--ETY-PQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQK-RILPKKSPIIVYGHMEPHMLVAFLGSIKSG   74 (502)
T ss_pred             CHHHHHHHHH--HHC-CCceEEEcC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCeEEEEeCCCHHHHHHHHHHHHhC
Confidence            4678888889  889 999999886  7899999999999999999998 999999999999999999999999999999


Q ss_pred             CeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCCc
Q 045351          109 VVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDP  188 (349)
Q Consensus       109 ~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (349)
                      ++++|+++..+.+++.++++..++++++++++........  ..+.++.  .......       ...........+++.
T Consensus        75 ~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~--~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~  143 (502)
T TIGR01734        75 HAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGT--QIITLSA--LEQAETS-------GGPVSFDHAVKGDDN  143 (502)
T ss_pred             CEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccCC--ceEEchH--hhhhhhh-------cCCccccccCCCCCe
Confidence            9999999999999999999999999999987654433221  1222211  1111111       011111223567899


Q ss_pred             EEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCC---CCHH
Q 045351          189 AAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGK---FDFG  265 (349)
Q Consensus       189 ~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~  265 (349)
                      ++++|||||||.||+|.++|+++...+.+....++ ...+++++...|++|..++..++.++..|+++++.++   +++.
T Consensus       144 ~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~  222 (502)
T TIGR01734       144 YYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFP-LSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFK  222 (502)
T ss_pred             EEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCC-CCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHH
Confidence            99999999999999999999999998888777777 6889999999999999999889999999999999864   5889


Q ss_pred             HHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCcc---cccccccCc
Q 045351          266 RMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN---RQLCLEFGA  339 (349)
Q Consensus       266 ~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~---~~~~~~~G~  339 (349)
                      .+++.+++++++.+.++|.+++.+.... ......+++++.+++||++++.++.+++.+.+++..   .|+.+|.|.
T Consensus       223 ~~~~~i~~~~~~~~~~~p~~~~~~l~~~-~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  298 (502)
T TIGR01734       223 LLFEELPKTGLNVWVSTPSFVDMCLLDP-NFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATV  298 (502)
T ss_pred             HHHHHHHHcCCeEEEEChhHHHHHHhcc-ccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceE
Confidence            9999999999999999999998887665 445567889999999999999999999999997543   245566543

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-37  Score=302.42  Aligned_cols=282  Identities=17%  Similarity=0.220  Sum_probs=226.5

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCC-------CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHH
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTA-------SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPV   99 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~-------~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~   99 (349)
                      ..|+.+.|...+  +.+ |+++|+++.+       ..+.+||+||.++++++|+.|.+ . +++||+|+++++|++++++
T Consensus        20 ~~~l~~~l~~~a--~~~-~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~-~~~gd~V~i~~~n~~e~~~   94 (631)
T PRK07769         20 NTNLVRHVERWA--KVR-GDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ-V-TKPGDRVAILAPQNLDYLI   94 (631)
T ss_pred             cCCHHHHHHHHH--HhC-CCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH-h-cCCCCEEEEEcCCChHHHH
Confidence            368999999999  889 9999998631       12689999999999999999998 6 8999999999999999999


Q ss_pred             HHHHHHhcCCeEecC-CCCCC--HHHHHHHHhhcCCeEEEEcCcccccccc----c----CcceEEeCCCCccccccccC
Q 045351          100 LYLSLFSLGVVVSPC-NPSCT--IPEILRQIHLSKPVIAFATHDTAHKIPQ----L----KYGTVLLDSPEFEPLSATDS  168 (349)
Q Consensus       100 ~~lA~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~  168 (349)
                      +++||+++|++++|+ ++..+  .+++.++++.+++++++++++..+.+..    .    ...++..+.  .....    
T Consensus        95 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----  168 (631)
T PRK07769         95 AFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDA--VPDEV----  168 (631)
T ss_pred             HHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccc--ccccc----
Confidence            999999999999999 45554  6889999999999999998765433221    0    011222211  00000    


Q ss_pred             CCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHh
Q 045351          169 LDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLR  248 (349)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~  248 (349)
                            ..........++++++|+|||||||.||||++||+++...+......++ +..++++++.+|++|.+|+..++.
T Consensus       169 ------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~Pl~h~~gl~~~~~  241 (631)
T PRK07769        169 ------GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALE-GQEGDRGVSWLPFFHDMGLITVLL  241 (631)
T ss_pred             ------ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcC-CCCcceEEEeCCCcCchhhHHHHH
Confidence                  0000111346789999999999999999999999999988877777776 688999999999999999977788


Q ss_pred             hhhcCCEEEEcCC--C--CHHHHHHHHHhhcc---cEEEechHHHHHHHhcCC--C--CCCCCCcchheehccCCCCCHH
Q 045351          249 SLGMGESLVCMGK--F--DFGRMLKAVEEFRV---SHVVLAPPVVLKMARDGG--T--MDGYDLSSIEVVASGGAHLTLS  317 (349)
Q Consensus       249 ~l~~G~~~v~~~~--~--~~~~~~~~i~~~~~---t~l~~~P~~l~~l~~~~~--~--~~~~~l~~lr~i~~gG~~l~~~  317 (349)
                      +++.|++++++++  +  ++..+++.+.++++   +.+..+|.++..+.....  .  ....++++||.+++||++++++
T Consensus       242 ~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~  321 (631)
T PRK07769        242 PALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPA  321 (631)
T ss_pred             HHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHH
Confidence            8889999998853  4  89999999999986   789999998877765310  1  1245789999999999999999


Q ss_pred             HHHHHHHHc
Q 045351          318 VIRKYLQLN  326 (349)
Q Consensus       318 ~~~~~~~~~  326 (349)
                      +.++|.+.|
T Consensus       322 ~~~~~~~~~  330 (631)
T PRK07769        322 SMRKFNEAF  330 (631)
T ss_pred             HHHHHHHHH
Confidence            999999987

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-36  Score=292.40  Aligned_cols=305  Identities=20%  Similarity=0.297  Sum_probs=235.9

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.+.|...+  +.+ |+++|+++.  ++.+||+||.+++.++|+.|.+..|+++||+|+++++|++++++++|||+++
T Consensus        24 ~~~~~~l~~~a--~~~-p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~   98 (562)
T PRK05677         24 PNIQAVLKQSC--QRF-ADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRA   98 (562)
T ss_pred             CcHHHHHHHHH--HhC-CCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            58999999999  889 999999986  7899999999999999999986259999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----cCcceEEeCC-CCccc----c--------cccc-C-
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----LKYGTVLLDS-PEFEP----L--------SATD-S-  168 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~-~~~~~----~--------~~~~-~-  168 (349)
                      |++++|+++..+.+++.++++.++++++++++.....+.+    .+.+.+.+.. .+...    .        .... . 
T Consensus        99 Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
T PRK05677         99 GLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPA  178 (562)
T ss_pred             CeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccc
Confidence            9999999999999999999999999999998765433221    1122222111 00000    0        0000 0 


Q ss_pred             ------CCCC----C-CCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc-CCC-CCcEEEEec
Q 045351          169 ------LDYY----D-DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA-ARS-RPAVVLCTV  235 (349)
Q Consensus       169 ------~~~~----~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~-~~~~~l~~~  235 (349)
                            ..+.    . ...........++++++++|||||||.||||+++|+++...+......+. .+. ..+++++.+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (562)
T PRK05677        179 YHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPL  258 (562)
T ss_pred             cCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcC
Confidence                  0000    0 00011122346789999999999999999999999999887665444332 022 346889999


Q ss_pred             ChhhHhhH-HHHHhhhhcCCEEEEcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCC
Q 045351          236 PYFHSYGF-TCCLRSLGMGESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAH  313 (349)
Q Consensus       236 p~~~~~g~-~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~  313 (349)
                      |++|.+|+ ..++..+..|++.++.+ .+++..+++.|+++++|+++++|.++..+.... .....+++++|.+++||++
T Consensus       259 pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~~~lr~v~~gG~~  337 (562)
T PRK05677        259 PLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNE-AFRKLDFSALKLTLSGGMA  337 (562)
T ss_pred             cHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCc-ccccCChhhceEEEEcCcc
Confidence            99999998 57778888898877664 579999999999999999999999999998765 4455667899999999999


Q ss_pred             CCHHHHHHHHHHcC--CcccccccccC
Q 045351          314 LTLSVIRKYLQLNR--TVNRQLCLEFG  338 (349)
Q Consensus       314 l~~~~~~~~~~~~~--~~~~~~~~~~G  338 (349)
                      +++++.+.|.+.++  ..+.|+.+|.|
T Consensus       338 ~~~~~~~~~~~~~~~~v~~~YG~tE~~  364 (562)
T PRK05677        338 LQLATAERWKEVTGCAICEGYGMTETS  364 (562)
T ss_pred             CCHHHHHHHHHHcCCCeeccCCccccC
Confidence            99999999999874  33445556654

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=8.7e-37  Score=297.39  Aligned_cols=297  Identities=18%  Similarity=0.182  Sum_probs=223.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCC---CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTAS---RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL  104 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~---~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~  104 (349)
                      .|+.+.+.+.     . ++++|+++...   .+.+||+||.+++.++|+.|++ .|+++||+|+++++|++++++++|||
T Consensus        87 ~n~~~~~~~~-----~-~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrV~i~~~n~~e~~~~~lA~  159 (652)
T TIGR01217        87 LNYAENLLRA-----A-GTEPALLYVDETHEPAPVTWAELRRQVASLAAALRA-LGVRPGDRVSGYLPNIPQAVVAMLAT  159 (652)
T ss_pred             eeHHHHHhcc-----C-CCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            5666665553     3 67888877422   2689999999999999999998 99999999999999999999999999


Q ss_pred             HhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccc---------cccc----ccC--cceEEeCCCC----------
Q 045351          105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA---------HKIP----QLK--YGTVLLDSPE----------  159 (349)
Q Consensus       105 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~----~~~--~~~~~~~~~~----------  159 (349)
                      +++|++++|+++.++.+++.++++.++++++|+++...         +.+.    ...  ..++.++...          
T Consensus       160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  239 (652)
T TIGR01217       160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKID  239 (652)
T ss_pred             HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccccccccc
Confidence            99999999999999999999999999999999986532         1111    111  1123222100          


Q ss_pred             ----ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHH-HhhhhccccCCCCCcEEEEe
Q 045351          160 ----FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAA-VAGGHAVRAARSRPAVVLCT  234 (349)
Q Consensus       160 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~l~~  234 (349)
                          +.++....      ............+++++|+|||||||.||||+++|++++.. .......++ +.++|++++.
T Consensus       240 ~~~~~~~~~~~~------~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~d~~~~~  312 (652)
T TIGR01217       240 GALDLEDFTAAA------QAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCD-LGPGDRLFYY  312 (652)
T ss_pred             CcccHHHHHhcc------cCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccC-CCCCcEEEEe
Confidence                01111000      00011112345689999999999999999999999997643 333444455 6889999999


Q ss_pred             cChhhHhhHHHHHhhhhcCCEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcC-CCCCCCCCcchheehc
Q 045351          235 VPYFHSYGFTCCLRSLGMGESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-GTMDGYDLSSIEVVAS  309 (349)
Q Consensus       235 ~p~~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~-~~~~~~~l~~lr~i~~  309 (349)
                      .|+.|+.+ ..++.+|+.|+++++.+.    .++..+++.++++++|++..+|.++..+.... ......++++||.+++
T Consensus       313 ~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~  391 (652)
T TIGR01217       313 TTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVAS  391 (652)
T ss_pred             CCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEe
Confidence            99999764 345689999999999852    27899999999999999988887777766532 0234567899999999


Q ss_pred             cCCCCCHHHHHHHHHHcCCcccccccccCce
Q 045351          310 GGAHLTLSVIRKYLQLNRTVNRQLCLEFGAP  340 (349)
Q Consensus       310 gG~~l~~~~~~~~~~~~~~~~~~~~~~~G~~  340 (349)
                      ||+++++++++++.+.++. .+...++||++
T Consensus       392 gGe~l~~~~~~~~~~~~~~-~~~~~~~yG~T  421 (652)
T TIGR01217       392 TGSPLPPDGFRWVYDEIKA-DVWLASISGGT  421 (652)
T ss_pred             ecCCCCHHHHHHHHHHhCC-CceEEeccCHH
Confidence            9999999999999998853 23344555544

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-37  Score=303.72  Aligned_cols=300  Identities=15%  Similarity=0.129  Sum_probs=227.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC-------------------------CCceeeHHHHHHHHHHHHHHHhhhcCCC
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA-------------------------SRHRILYPDLTLRIKTLAYSLKTKYKLS   82 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~-------------------------~~~~~Ty~~l~~~~~~~a~~L~~~~g~~   82 (349)
                      .|+.+.|...+  +.+ |+++|+.+..                         ..+++||+||.++++++|+.|.+ +|++
T Consensus        69 ~t~~~~~~~~~--~~~-p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~-~Gv~  144 (700)
T PTZ00216         69 PNFLQRLERIC--KER-GDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAE-LGLT  144 (700)
T ss_pred             CCHHHHHHHHH--HhC-CCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHH-hCCC
Confidence            68999999999  999 9999998731                         25799999999999999999998 9999


Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc-------cCcceEEe
Q 045351           83 KYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ-------LKYGTVLL  155 (349)
Q Consensus        83 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~  155 (349)
                      +||+|+|+++|+++|+++++||+++|++++|+++..+.+++.++++.++++++|++......+..       ....++.+
T Consensus       145 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~  224 (700)
T PTZ00216        145 KGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYL  224 (700)
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999998754332211       11234444


Q ss_pred             CCCC------------ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccc-
Q 045351          156 DSPE------------FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVR-  222 (349)
Q Consensus       156 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-  222 (349)
                      +...            +.++......   ............++++++|+|||||||.||||++||+|+++.+......+ 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~  301 (700)
T PTZ00216        225 DSLPASVDTEGCRLVAWTDVVAKGHS---AGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLN  301 (700)
T ss_pred             CCCccccccCCceEEEHHHHHHhCCc---cccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcc
Confidence            3211            1111111000   00111112345689999999999999999999999999999877655433 


Q ss_pred             ---cCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHH-------HHHhhcccEEEechHHHHHHHhc
Q 045351          223 ---AARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLK-------AVEEFRVSHVVLAPPVVLKMARD  292 (349)
Q Consensus       223 ---~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~i~~~~~t~l~~~P~~l~~l~~~  292 (349)
                         ..+..++++++.+|++|.+++......+..|+++++.   ++..+.+       .++++++|++.++|.+++.+.+.
T Consensus       302 ~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~  378 (700)
T PTZ00216        302 DLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKA  378 (700)
T ss_pred             cccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHH
Confidence               2135789999999999999986556667888887764   4555554       68899999999999999887643


Q ss_pred             CCCC-------------------------CCC----------------CCcchheehccCCCCCHHHHHHHHHHcC-Ccc
Q 045351          293 GGTM-------------------------DGY----------------DLSSIEVVASGGAHLTLSVIRKYLQLNR-TVN  330 (349)
Q Consensus       293 ~~~~-------------------------~~~----------------~l~~lr~i~~gG~~l~~~~~~~~~~~~~-~~~  330 (349)
                      . ..                         .+.                ..+++|.+++||+++++++.+.+...++ ..+
T Consensus       379 ~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~~l~~  457 (700)
T PTZ00216        379 V-EAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFGMVIQ  457 (700)
T ss_pred             H-HHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhhhHhh
Confidence            1 00                         000                0157999999999999999887776653 223


Q ss_pred             cccccccC
Q 045351          331 RQLCLEFG  338 (349)
Q Consensus       331 ~~~~~~~G  338 (349)
                      .|+.||.+
T Consensus       458 ~YG~TEt~  465 (700)
T PTZ00216        458 GWGLTETV  465 (700)
T ss_pred             ccCccccc
Confidence            34556654

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.3e-36  Score=288.60  Aligned_cols=297  Identities=22%  Similarity=0.251  Sum_probs=242.4

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+++.+++   .+ |+++|+.+. +++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus         3 ~~l~~~~~~~~---~~-~~~~a~~~~-~~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~v~i~~~~~~e~~v~~la~~~~   76 (504)
T PRK07514          3 NNLFDALRAAF---AD-RDAPFIETP-DGLRYTYGDLDAASARLANLLVA-LGVKPGDRVAVQVEKSPEALALYLATLRA   76 (504)
T ss_pred             ccHHHHHHHHh---hC-CCCeEEEeC-CCCEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            57888888877   34 789999874 37899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc----Ccc-eEEeCCCCccccccccCCCCCCCCccccccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL----KYG-TVLLDSPEFEPLSATDSLDYYDDDEERVRVS  182 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (349)
                      |++++|+++..+.+++..+++.++++++++++.....+...    ... ++.++......+......    .........
T Consensus        77 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  152 (504)
T PRK07514         77 GAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAA----APDDFETVP  152 (504)
T ss_pred             CcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhh----cCcccCccc
Confidence            99999999999999999999999999999987655443321    111 233332111111111000    111112234


Q ss_pred             cCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCC
Q 045351          183 VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGK  261 (349)
Q Consensus       183 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~  261 (349)
                      ..++++++++|||||||.||+|.++|+++...+......++ +.+++++++..|++|..|+ ..++.+++.|+++++.+.
T Consensus       153 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  231 (504)
T PRK07514        153 RGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWR-FTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPK  231 (504)
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhC-CCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCC
Confidence            56789999999999999999999999999999887777777 6889999999999999998 577899999999999999


Q ss_pred             CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccccC
Q 045351          262 FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFG  338 (349)
Q Consensus       262 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G  338 (349)
                      +++..+++.+  +++|++.++|.++.+++... ......++++|.+++||+++++++++.+.+.++.  .+.|+.+|.|
T Consensus       232 ~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  307 (504)
T PRK07514        232 FDPDAVLALM--PRATVMMGVPTFYTRLLQEP-RLTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETN  307 (504)
T ss_pred             CCHHHHHHHH--HhheeeecHHHHHHHHHcCC-CCCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeeccccccc
Confidence            9999999999  47999999999999998876 5666678899999999999999999999998843  3334555544

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.4e-37  Score=349.21  Aligned_cols=292  Identities=17%  Similarity=0.183  Sum_probs=247.6

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.++|..++  +++ |+++|+++.  ++.+||+||.++++++|+.|.+ .|+++|++|+++++|++++++++|||+++
T Consensus       511 ~~~~~~~~~~a--~~~-p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L~~-~gv~~g~~V~l~~~~s~~~i~~~la~~~a  584 (5163)
T PRK12316        511 RGVHRLFEEQV--ERT-PEAPALAFG--EETLDYAELNRRANRLAHALIE-RGVGPDVLVGVAMERSIEMVVALLAILKA  584 (5163)
T ss_pred             CCHHHHHHHHH--HHC-CCCeEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence            68999999999  999 999999987  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-CcceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      |++++|++|..+.+++.++++.+++++++++......+... ...++.++...  .....       ...........++
T Consensus       585 G~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~  655 (5163)
T PRK12316        585 GGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPA--AWLEG-------YSEENPGTELNPE  655 (5163)
T ss_pred             CCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCcc--hhhcc-------CCCCCCCCCCCCC
Confidence            99999999999999999999999999999987665444321 22333333211  11111       0111122245678


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC---CCC
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG---KFD  263 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~---~~~  263 (349)
                      ++++|+|||||||.||||+++|+++.+.+.+....++ +..+++++...|++|+.++..++.+|+.|+++++.+   .++
T Consensus       656 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~  734 (5163)
T PRK12316        656 NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYG-LGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRD  734 (5163)
T ss_pred             CeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcC-CCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCC
Confidence            9999999999999999999999999999999888888 789999999999999999999999999999999984   479


Q ss_pred             HHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccC
Q 045351          264 FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       264 ~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G  338 (349)
                      +..+++.++++++|++.++|++++.|.+.. .  ..+++++|.+++||+++++++.+++.+.+++.   +.||.||.+
T Consensus       735 ~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~  809 (5163)
T PRK12316        735 PAKLVELINREGVDTLHFVPSMLQAFLQDE-D--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAA  809 (5163)
T ss_pred             HHHHHHHHHHcCCeEEEeCHHHHHHHHhcc-c--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChhe
Confidence            999999999999999999999999998764 2  23578999999999999999999998887643   334445544

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-36  Score=296.84  Aligned_cols=297  Identities=18%  Similarity=0.160  Sum_probs=226.7

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCC---CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTAS---RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL  104 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~---~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~  104 (349)
                      .|+.+.+.++    .. |+++|+++.+.   .+.+||+||.+++.++|+.|++ .|+++||+|+++++|++++++++|||
T Consensus        86 ~n~~~~~~~~----~~-~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~v~~~lA~  159 (655)
T PRK03584         86 LNYAENLLRH----RR-DDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRA-LGVGPGDRVAAYLPNIPETVVAMLAT  159 (655)
T ss_pred             eeHHHHhhcc----CC-CCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            4566555542    36 89999997521   2689999999999999999998 99999999999999999999999999


Q ss_pred             HhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc---------cc----cc-C-cceEEeCCCC----------
Q 045351          105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK---------IP----QL-K-YGTVLLDSPE----------  159 (349)
Q Consensus       105 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~---------~~----~~-~-~~~~~~~~~~----------  159 (349)
                      +++|++++|+++..+.+++.++++.++++++++++.....         +.    .. . ..++.++...          
T Consensus       160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  239 (655)
T PRK03584        160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPG  239 (655)
T ss_pred             HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCC
Confidence            9999999999999999999999999999999997653211         00    01 1 1122222110          


Q ss_pred             ---ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHH-HhhhhccccCCCCCcEEEEec
Q 045351          160 ---FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAA-VAGGHAVRAARSRPAVVLCTV  235 (349)
Q Consensus       160 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~l~~~  235 (349)
                         +.++....      ............+++++|+|||||||.||||++||++++.. .......++ +.++|++++..
T Consensus       240 ~~~~~~~~~~~------~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~d~~~~~~  312 (655)
T PRK03584        240 ALLWEDFLAPA------EAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCD-LGPGDRFFWYT  312 (655)
T ss_pred             cccHHHHhhcc------ccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcC-CCCCCEEEEcC
Confidence               11111000      01111122456789999999999999999999999987644 444455555 68899999999


Q ss_pred             ChhhHhhHHHHHhhhhcCCEEEEcC----CCCHHHHHHHHHhhcccEEEechHHHHHHHhcC-CCCCCCCCcchheehcc
Q 045351          236 PYFHSYGFTCCLRSLGMGESLVCMG----KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-GTMDGYDLSSIEVVASG  310 (349)
Q Consensus       236 p~~~~~g~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~-~~~~~~~l~~lr~i~~g  310 (349)
                      ++.|..+. .++.+|+.|+++++.+    .+++..+++.++++++|++.++|.+++.|.+.. ......++++||.+++|
T Consensus       313 ~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~  391 (655)
T PRK03584        313 TCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGST  391 (655)
T ss_pred             CchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEe
Confidence            99887543 4678999999999985    258999999999999999999999999988753 02245678999999999


Q ss_pred             CCCCCHHHHHHHHHHcCCcccccccccCc
Q 045351          311 GAHLTLSVIRKYLQLNRTVNRQLCLEFGA  339 (349)
Q Consensus       311 G~~l~~~~~~~~~~~~~~~~~~~~~~~G~  339 (349)
                      |+++++++++++.+.++. .+.+.+.||+
T Consensus       392 Ge~l~~~~~~~~~~~~~~-~~~~~~~yG~  419 (655)
T PRK03584        392 GSPLPPEGFDWVYEHVKA-DVWLASISGG  419 (655)
T ss_pred             cCCCCHHHHHHHHHHhCC-CceEEeccCh
Confidence            999999999999998842 2234444443

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-36  Score=290.72  Aligned_cols=304  Identities=18%  Similarity=0.219  Sum_probs=236.9

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC--CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA--SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLF  105 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~  105 (349)
                      +|+.+++...+  +.+ |+++++++..  ..+++||+||.++++++|++|.+ .|+++||+|+++++|+.+++++++||+
T Consensus        10 ~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~-~g~~~gd~v~i~~~~~~~~~~~~la~~   85 (542)
T PRK06018         10 LLCHRIIDHAA--RIH-GNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDR-DGIKLGDRVATIAWNTWRHLEAWYGIM   85 (542)
T ss_pred             CCHHHHHHHHH--HhC-CCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence            69999999999  899 9999998531  24789999999999999999999 999999999999999999999999999


Q ss_pred             hcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----Ccc-eEEeCCCC-cccccc----ccCCCCCCC
Q 045351          106 SLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KYG-TVLLDSPE-FEPLSA----TDSLDYYDD  174 (349)
Q Consensus       106 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~-~~~~~~~~-~~~~~~----~~~~~~~~~  174 (349)
                      ++|++++|+++..+.+++.++++.+++++++++.+..+.+.+.     ... ++...... ......    .........
T Consensus        86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (542)
T PRK06018         86 GIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEA  165 (542)
T ss_pred             hcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccC
Confidence            9999999999999999999999999999999988655443221     111 22221110 000000    000000000


Q ss_pred             CccccccccCCCCcEEEEeccCCCCCCceeeechhhHH-HHH-hhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhc
Q 045351          175 DEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLV-AAV-AGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGM  252 (349)
Q Consensus       175 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~-~~~-~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  252 (349)
                      ..........++++++|+|||||||.||+|.+||++.+ ... ......++ +..+++++...|++|.+++...+.++..
T Consensus       166 ~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~p~~h~~~~~~~~~~~~~  244 (542)
T PRK06018        166 DGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALG-TSAADTMLPVVPLFHANSWGIAFSAPSM  244 (542)
T ss_pred             CcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcC-CCCCCEEEEecCHHHHhhhHHHHhhhhc
Confidence            00111123466789999999999999999999999753 222 22334455 6888999999999999999777788999


Q ss_pred             CCEEEEcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--Cc
Q 045351          253 GESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TV  329 (349)
Q Consensus       253 G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~  329 (349)
                      |+++++.. .+++..+++.++++++|++.++|.+++.|.+.. .....+++++|.+++||+++++++++++.+ ++  ..
T Consensus       245 g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~  322 (542)
T PRK06018        245 GTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYM-EKEGLKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVR  322 (542)
T ss_pred             CceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcc-cccCCCcccceEEEEcCCCCCHHHHHHHHH-hCCCeE
Confidence            99998874 679999999999999999999999999998876 555567889999999999999999999998 63  23


Q ss_pred             ccccccccC
Q 045351          330 NRQLCLEFG  338 (349)
Q Consensus       330 ~~~~~~~~G  338 (349)
                      +.|+.+|.|
T Consensus       323 ~~YG~tE~~  331 (542)
T PRK06018        323 HAWGMTEMS  331 (542)
T ss_pred             eeecccccC
Confidence            334556654

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=8.6e-37  Score=320.72  Aligned_cols=302  Identities=15%  Similarity=0.131  Sum_probs=237.3

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeC-------CCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDT-------ASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~-------~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      .++.+.|..++  +.+ |+++|+++.       ..++++||+||.++++++|++|.+ .|+++||+|+|+++|+++++++
T Consensus       236 ~~l~~~~~~~a--~~~-pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       236 GAIHDIFADNA--EKH-PDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLK-TGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             CcHHHHHHHHH--HhC-CCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEecCCHHHHHH
Confidence            57999999999  999 999999863       135799999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc---cccc-----c----CcceEEeCCC-Ccc-ccccc
Q 045351          101 YLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH---KIPQ-----L----KYGTVLLDSP-EFE-PLSAT  166 (349)
Q Consensus       101 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---~~~~-----~----~~~~~~~~~~-~~~-~~~~~  166 (349)
                      +|||+++|++++|++|..+.+++.++++.+++++++++.....   .+..     .    ....+.+... ... .....
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEG  391 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccccccccc
Confidence            9999999999999999999999999999999999998754211   1100     0    0011111100 000 00000


Q ss_pred             c--C--CCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhh
Q 045351          167 D--S--LDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYG  242 (349)
Q Consensus       167 ~--~--~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g  242 (349)
                      .  +  ..+.............++++++|+|||||||.||||+++|+++.+.+.+....++ +.++++++...|++|+.+
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~~~~~~~~~d~~  470 (1389)
T TIGR03443       392 GETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFG-LSENDKFTMLSGIAHDPI  470 (1389)
T ss_pred             ccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcC-CCCCCEEEEecCceecch
Confidence            0  0  0000000001112346789999999999999999999999999999888887777 789999999999999999


Q ss_pred             HHHHHhhhhcCCEEEEcCC---CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHH
Q 045351          243 FTCCLRSLGMGESLVCMGK---FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVI  319 (349)
Q Consensus       243 ~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~  319 (349)
                      +..++.+|+.|+++++++.   .++..+++.|+++++|++.++|++++.|....    ...+++||.+++||+++++...
T Consensus       471 ~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~----~~~~~~lr~~~~gGe~l~~~~~  546 (1389)
T TIGR03443       471 QRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA----TTPIPSLHHAFFVGDILTKRDC  546 (1389)
T ss_pred             HHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc----cccCCCccEEEEecccCCHHHH
Confidence            9999999999999999864   36889999999999999999999999987653    2357899999999999999999


Q ss_pred             HHHHHHcCCc---ccccccccC
Q 045351          320 RKYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       320 ~~~~~~~~~~---~~~~~~~~G  338 (349)
                      +++.+..++.   +.|+.||.+
T Consensus       547 ~~~~~~~~~~~l~n~YG~TE~~  568 (1389)
T TIGR03443       547 LRLQTLAENVCIVNMYGTTETQ  568 (1389)
T ss_pred             HHHHHhCCCCEEEECccCCccc
Confidence            9998877543   334445543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-36  Score=288.24  Aligned_cols=293  Identities=17%  Similarity=0.137  Sum_probs=234.7

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhc-CCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKY-KLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~-g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      .++.+.|...+    . ++++|+++.  ++.+||+||.++++++|++|++ . |+++|++|+++++|+++++++++||++
T Consensus         5 ~~~~~~l~~~a----~-~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~-~~~~~~~~~V~i~~~n~~~~~~~~lA~~~   76 (529)
T PRK07867          5 PTVAELLLPLA----E-DDDRGLYFE--DSFTSWREHIRGSAARAAALRA-RLDPTRPPHVGVLLDNTPEFSLLLGAAAL   76 (529)
T ss_pred             ccHHHHHHHhc----c-cCCceEEEC--CcEEeHHHHHHHHHHHHHHHHH-hhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            57888888777    4 678999886  7899999999999999999998 6 899999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc--CcceEEeCCCCccccccccCCCCCCCCccccccccC
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL--KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVS  184 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (349)
                      +|++++|+++..+.+++.++++.+++++++++++....+...  ...++..+...+.+......      ..........
T Consensus        77 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~  150 (529)
T PRK07867         77 SGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHR------DAEPPFRVAD  150 (529)
T ss_pred             cCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEeccccHHHHhcccC------CCCCCcccCC
Confidence            999999999999999999999999999999998766544332  22233333222222221110      0111122456


Q ss_pred             CCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCC
Q 045351          185 LSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFD  263 (349)
Q Consensus       185 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~  263 (349)
                      ++++++++|||||||.||+|+++|+++..........++ +..+|+++...|++|.+++ ..++.++..|+++++.++++
T Consensus       151 ~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~  229 (529)
T PRK07867        151 PDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFG-LGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFS  229 (529)
T ss_pred             ccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhC-CCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCC
Confidence            789999999999999999999999999988888777777 6889999999999999999 55667899999999999999


Q ss_pred             HHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--CcccccccccC
Q 045351          264 FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEFG  338 (349)
Q Consensus       264 ~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~G  338 (349)
                      +..+++.++++++|++.++|..+..++... .......+++|. ++||+.+++. ..++.+.++  ..+.|+.+|.|
T Consensus       230 ~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~-~~~~~~~~~lr~-~~gg~~~~~~-~~~~~~~~g~~l~~~YG~TE~~  303 (529)
T PRK07867        230 ASGFLPDVRRYGATYANYVGKPLSYVLATP-ERPDDADNPLRI-VYGNEGAPGD-IARFARRFGCVVVDGFGSTEGG  303 (529)
T ss_pred             HHHHHHHHHHhCCeEEeccHHHHHHHHhCC-CcccccccceEE-EecCCCChHH-HHHHHHHhCCcEEEeecccccc
Confidence            999999999999999999999999988765 433333467885 4588888776 467777774  23345566655

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-36  Score=290.58  Aligned_cols=298  Identities=21%  Similarity=0.252  Sum_probs=237.8

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +|+.+++...+  +++ |+++|++++  ++.+||.||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus         7 ~~~~~~~~~~a--~~~-p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~~~~   80 (528)
T PRK07470          7 MNLAHFLRQAA--RRF-PDRIALVWG--DRSWTWREIDARVDALAAALAA-RGVRKGDRILVHSRNCNQMFESMFAAFRL   80 (528)
T ss_pred             CCHHHHHHHHH--HHC-CCceEEEEC--CccccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence            68999999999  899 999999986  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----C-cceEEeCCC----CccccccccCCCCCCCCcc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----K-YGTVLLDSP----EFEPLSATDSLDYYDDDEE  177 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  177 (349)
                      |++++++++..+.+++.++++.+++++++++++..+.+...     . ..++.++..    .+.++....      ....
T Consensus        81 G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  154 (528)
T PRK07470         81 GAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARH------LGAR  154 (528)
T ss_pred             CeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhcC------CCCC
Confidence            99999999999999999999999999999997654333211     1 112222221    111111110      0011


Q ss_pred             ccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcc-ccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEE
Q 045351          178 RVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV-RAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESL  256 (349)
Q Consensus       178 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~  256 (349)
                      .......++++++|+|||||||.||+|.++|+++...+...... .....+.++++...|++|.+++..++ .++.|++.
T Consensus       155 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~  233 (528)
T PRK07470        155 VANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAAT  233 (528)
T ss_pred             CCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceE
Confidence            11224567899999999999999999999999997655432222 21256788999999999999986544 67788887


Q ss_pred             EEcC--CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccc
Q 045351          257 VCMG--KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQ  332 (349)
Q Consensus       257 v~~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~  332 (349)
                      ++.+  .+++..+++.|+++++|++.++|.+++.+.+.+ .....+++++|.+++||+++++++.+++.+.++.  .+.|
T Consensus       234 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~Y  312 (528)
T PRK07470        234 VLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHP-AVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYF  312 (528)
T ss_pred             EEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCc-CcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhC
Confidence            7764  679999999999999999999999999999886 6666778999999999999999999999888853  2334


Q ss_pred             cccccCc
Q 045351          333 LCLEFGA  339 (349)
Q Consensus       333 ~~~~~G~  339 (349)
                      +.+|.|.
T Consensus       313 G~TE~~~  319 (528)
T PRK07470        313 GLGEVTG  319 (528)
T ss_pred             CCcccCC
Confidence            5566543

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-36  Score=290.90  Aligned_cols=322  Identities=22%  Similarity=0.257  Sum_probs=250.4

Q ss_pred             cceeeccCCCCC-CCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEE
Q 045351           10 ETKIFHSLRPSI-AFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAF   88 (349)
Q Consensus        10 ~~~~~~~~~~~~-~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~   88 (349)
                      ..+.|....|.. .++.+..++.+.|...+  +.+ |+++|+.+.  ++.+||.||.+++.++|+.|.+ .|+++|++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a--~~~-p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~   87 (567)
T PRK06178         14 QQAAWPAGIPREPEYPHGERPLTEYLRAWA--RER-PQRPAIIFY--GHVITYAELDELSDRFAALLRQ-RGVGAGDRVA   87 (567)
T ss_pred             HHhhCCcCCCCCCCCCcCcccHHHHHHHHH--HHC-CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEE
Confidence            455665444444 45554488999999999  889 999999987  7899999999999999999998 9999999999


Q ss_pred             EEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc----Ccc-eEEeCCCCcccc
Q 045351           89 LLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL----KYG-TVLLDSPEFEPL  163 (349)
Q Consensus        89 i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~  163 (349)
                      ++++|+.+++++++||+++|++++|++|..+.+++.++++.++++++++++...+.+.+.    ... ++..+..+....
T Consensus        88 i~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~  167 (567)
T PRK06178         88 VFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPA  167 (567)
T ss_pred             EECCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccc
Confidence            999999999999999999999999999999999999999999999999988765543321    111 111111110000


Q ss_pred             ---------cccc---CCCC-------CCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccC
Q 045351          164 ---------SATD---SLDY-------YDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAA  224 (349)
Q Consensus       164 ---------~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~  224 (349)
                               ....   ...+       .............++++++|+|||||||.||+|++||+++.............
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~  247 (567)
T PRK06178        168 EPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVV  247 (567)
T ss_pred             ccccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhcc
Confidence                     0000   0000       00001111223557899999999999999999999999998876554333222


Q ss_pred             CCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcc
Q 045351          225 RSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS  303 (349)
Q Consensus       225 ~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~  303 (349)
                      ..++++++..+|++|.+|+ ..++.++..|+++++.+++++..+++.++++++|.+.++|..+..+.... ...+.++++
T Consensus       248 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~-~~~~~~l~~  326 (567)
T PRK06178        248 GGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHP-RFAEYDLSS  326 (567)
T ss_pred             CCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCC-CCCCCCcch
Confidence            6788999999999999998 67888999999999999999999999999999999999999999998876 556667788


Q ss_pred             hheeh--ccCCCCCHHHHHHHHHHcCCcc---cccccccC
Q 045351          304 IEVVA--SGGAHLTLSVIRKYLQLNRTVN---RQLCLEFG  338 (349)
Q Consensus       304 lr~i~--~gG~~l~~~~~~~~~~~~~~~~---~~~~~~~G  338 (349)
                      ++.+.  ++|+++++++.+.+.+.++...   .|+++|.|
T Consensus       327 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~  366 (567)
T PRK06178        327 LRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETH  366 (567)
T ss_pred             heeeeeccccccCCHHHHHHHHHHhCCccccccccccccc
Confidence            88764  4568999999999999886432   35566654

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-36  Score=291.73  Aligned_cols=306  Identities=17%  Similarity=0.168  Sum_probs=239.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC-CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA-SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~-~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      .|+.+.|+..+  ..+ |++.|++++. .++.+||+||.++++++|++|.++.|+++||+|+++++|+.+++++++||++
T Consensus        10 ~~~~~~l~~~a--~~~-~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~   86 (576)
T PRK05620         10 LSLTRILEYGS--TVH-GDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC   86 (576)
T ss_pred             CcHHHHHHHHH--HhC-CCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence            68999999999  899 9999998753 3589999999999999999998537999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----Ccc-eEEeCCCCccccccccCCC--------C-
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KYG-TVLLDSPEFEPLSATDSLD--------Y-  171 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~--------~-  171 (349)
                      +|++++|+++..+.+++.++++.++++++++++...+.+.+.     ..+ ++..+..............        + 
T Consensus        87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (576)
T PRK05620         87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALL  166 (576)
T ss_pred             cCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHh
Confidence            999999999999999999999999999999988655443221     111 2333321111000000000        0 


Q ss_pred             CCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhh--hccccCCCCCcEEEEecChhhHhhHHHHHhh
Q 045351          172 YDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGG--HAVRAARSRPAVVLCTVPYFHSYGFTCCLRS  249 (349)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~  249 (349)
                      .............++++++++|||||||.||||.++|+++.......  ...+. +..++++++.+|++|.+|+...+.+
T Consensus       167 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~pl~h~~g~~~~~~~  245 (576)
T PRK05620        167 DGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLA-VTHGESFLCCVPIYHVLSWGVPLAA  245 (576)
T ss_pred             hcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcC-CCCCCeEEEeCChHHhhhhHHHHHH
Confidence            00010111223566899999999999999999999999987654432  23445 6789999999999999999888899


Q ss_pred             hhcCCEEEEcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC-
Q 045351          250 LGMGESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR-  327 (349)
Q Consensus       250 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~-  327 (349)
                      +..|+++++.+ .+++..+++.++++++|++.++|.++..|+... .....+..++|.+++||+++++++.+++.+.++ 
T Consensus       246 l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~  324 (576)
T PRK05620        246 FMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHY-LKNPPERMSLQEIYVGGSAVPPILIKAWEERYGV  324 (576)
T ss_pred             HhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHh-hccCcccCceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence            99999999885 679999999999999999999999999888653 333334568999999999999999999998874 


Q ss_pred             -CcccccccccC
Q 045351          328 -TVNRQLCLEFG  338 (349)
Q Consensus       328 -~~~~~~~~~~G  338 (349)
                       ..+.|+.+|.|
T Consensus       325 ~~~~~YG~tE~~  336 (576)
T PRK05620        325 DVVHVWGMTETS  336 (576)
T ss_pred             ceeeeccccccc
Confidence             23334556654

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=8.9e-37  Score=345.80  Aligned_cols=292  Identities=17%  Similarity=0.203  Sum_probs=245.6

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|..++  ..+ |+++|+++.  ++.+||+||.++++++|+.|.+ .|+++|++|+++++|+.++++++|||+++
T Consensus      2003 ~~~~~~~~~~a--~~~-p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~~~~~lAil~a 2076 (5163)
T PRK12316       2003 PGVHQRIAEQA--ARA-PEAIAVVFG--DQHLSYAELDSRANRLAHRLRA-RGVGPEVRVAIAAERSFELVVALLAVLKA 2076 (5163)
T ss_pred             CCHHHHHHHHH--HhC-CCCeEEEcC--CCeEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHhh
Confidence            58999999999  999 999999987  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc-cCcceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ-LKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      |++++|++|..+.+++.++++++++++++++......+.. .....+.++..  .... .       ...........++
T Consensus      2077 Ga~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~-------~~~~~~~~~~~~~ 2146 (5163)
T PRK12316       2077 GGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRD--AEWA-D-------YPDTAPAVQLAGE 2146 (5163)
T ss_pred             ceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccch--hhhh-c-------cCccCCCCCCCCC
Confidence            9999999999999999999999999999998876554432 11222222211  0000 0       0111112346789


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC--CCCH
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG--KFDF  264 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~--~~~~  264 (349)
                      ++++|+|||||||.||||+++|+++.+.+......++ +.++++++...|++|+.++..++.+|+.|+++++.+  .+++
T Consensus      2147 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~ 2225 (5163)
T PRK12316       2147 NLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYE-LSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDP 2225 (5163)
T ss_pred             CeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcC-CCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCH
Confidence            9999999999999999999999999999988888887 789999999999999999999999999999998875  4689


Q ss_pred             HHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccC
Q 045351          265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       265 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G  338 (349)
                      ..+++.|+++++|++.++|++++.|.+.. ... ...++||.+++||++++++++++|.+.++..   +.||.||.+
T Consensus      2226 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~-~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 2300 (5163)
T PRK12316       2226 EQLYDEMERHGVTILDFPPVYLQQLAEHA-ERD-GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAV 2300 (5163)
T ss_pred             HHHHHHHHHcCCeEEEcChHHHHHHHhhh-hcc-cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhhe
Confidence            99999999999999999999999998764 322 2345899999999999999999999887643   334555543

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6e-37  Score=297.14  Aligned_cols=281  Identities=17%  Similarity=0.232  Sum_probs=221.6

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC-------CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA-------SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~-------~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      .|+.+++...+  ..+ |+++|+++.+       ..+.+||+||.++++++|++|.+ . +++||+|+++++|+++|+++
T Consensus        34 ~~~~~~~~~~~--~~~-~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~V~l~~~n~~e~~~~  108 (612)
T PRK12476         34 TTLISLIERNI--ANV-GDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ-V-AGPGDRVAILAPQGIDYVAG  108 (612)
T ss_pred             CcHHHHHHHHH--HhC-CCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH-h-cCCCCEEEEECCCChhHHHH
Confidence            78999999999  889 9999998632       12589999999999999999998 6 99999999999999999999


Q ss_pred             HHHHHhcCCeEecC-CCCCC--HHHHHHHHhhcCCeEEEEcCcccccccc----c---C-cceEEeCCCCccccccccCC
Q 045351          101 YLSLFSLGVVVSPC-NPSCT--IPEILRQIHLSKPVIAFATHDTAHKIPQ----L---K-YGTVLLDSPEFEPLSATDSL  169 (349)
Q Consensus       101 ~lA~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~  169 (349)
                      ++||+++|++++|+ ++..+  .+++.++++.++++++++++...+.+..    .   . ..++.++.  ..   ..   
T Consensus       109 ~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~---~~---  180 (612)
T PRK12476        109 FFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDA--IP---DS---  180 (612)
T ss_pred             HHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEecc--cc---cc---
Confidence            99999999999999 57666  7899999999999999998765443221    0   1 12222221  10   00   


Q ss_pred             CCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhh
Q 045351          170 DYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRS  249 (349)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~  249 (349)
                          ...........++++++|+|||||||.||||++||+++...+......++.+.+++++++.+|++|.+|+...+.+
T Consensus       181 ----~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~  256 (612)
T PRK12476        181 ----AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFP  256 (612)
T ss_pred             ----ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHH
Confidence                0001111234568999999999999999999999999988776655444423678899999999999999766666


Q ss_pred             hhcCCEEEEcCC--C--CHHHHHHHHH--hhcccEEEechHHHHHHHhcCC---CCCCCCCcchheehccCCCCCHHHHH
Q 045351          250 LGMGESLVCMGK--F--DFGRMLKAVE--EFRVSHVVLAPPVVLKMARDGG---TMDGYDLSSIEVVASGGAHLTLSVIR  320 (349)
Q Consensus       250 l~~G~~~v~~~~--~--~~~~~~~~i~--~~~~t~l~~~P~~l~~l~~~~~---~~~~~~l~~lr~i~~gG~~l~~~~~~  320 (349)
                      ++.|++.++..+  +  ++..+++.++  +++++.+..+|.++..++....   .....+++++| +++||+++++++.+
T Consensus       257 ~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~  335 (612)
T PRK12476        257 AVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVT  335 (612)
T ss_pred             HhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHH
Confidence            667777766642  3  8999999995  5899999999999888876420   12345788999 99999999999999


Q ss_pred             HHHHHc
Q 045351          321 KYLQLN  326 (349)
Q Consensus       321 ~~~~~~  326 (349)
                      ++.+.|
T Consensus       336 ~~~~~~  341 (612)
T PRK12476        336 TFNKAF  341 (612)
T ss_pred             HHHHHH
Confidence            999987

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-36  Score=290.14  Aligned_cols=304  Identities=21%  Similarity=0.200  Sum_probs=237.6

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCC--CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTAS--RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLF  105 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~  105 (349)
                      .++.++|...+  ..+ +++.++.+...  .+.+||.||.++++++|++|.+ .|+++||+|+++++|+++++++++||+
T Consensus        10 ~~~~~~l~~~~--~~~-~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~~d~v~i~~~~~~~~~~~~la~~   85 (539)
T PRK07008         10 LLISSLIAHAA--RHA-GDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAA-LGVEPGDRVGTLAWNGYRHLEAYYGVS   85 (539)
T ss_pred             CCHHHHHHHHH--hhC-CCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence            47899999999  888 99988876322  3689999999999999999999 999999999999999999999999999


Q ss_pred             hcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----Ccc-eEEeCCCCc-c----ccccccCCCCCCC
Q 045351          106 SLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KYG-TVLLDSPEF-E----PLSATDSLDYYDD  174 (349)
Q Consensus       106 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~-~~~~~~~~~-~----~~~~~~~~~~~~~  174 (349)
                      ++|++++|+++..+.+++..+++.+++++++++.++.+.+.+.     ... ++.+..... .    ......+. ....
T Consensus        86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~  164 (539)
T PRK07008         86 GSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETL-VGAQ  164 (539)
T ss_pred             hcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHH-hccc
Confidence            9999999999999999999999999999999987654433221     111 111211100 0    00000000 0000


Q ss_pred             CccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHh--hhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhc
Q 045351          175 DEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVA--GGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGM  252 (349)
Q Consensus       175 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~--~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  252 (349)
                      ..........+++.++++|||||||.||+|++||++++....  .+...++ +..++++++..|++|.+++...+.++..
T Consensus       165 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~~~~~~~~~l~~  243 (539)
T PRK07008        165 DGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMG-LSARDAVLPVVPMFHVNAWGLPYSAPLT  243 (539)
T ss_pred             CCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccC-CCCCceEEecCchHHhhhHHHHHHHHhc
Confidence            111112234668899999999999999999999999875432  2334555 6788999999999999888777888999


Q ss_pred             CCEEEEc-CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--c
Q 045351          253 GESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--V  329 (349)
Q Consensus       253 G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~  329 (349)
                      |+++++. +.+++..+++.++++++|++.++|.++..|.+.. .....+++++|.+++||+++++++++++.+.++.  .
T Consensus       244 G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~  322 (539)
T PRK07008        244 GAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHM-REAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVI  322 (539)
T ss_pred             CceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcc-cccCCCcccceEEEEcCCCCCHHHHHHHHHHhCCcee
Confidence            9999987 4679999999999999999999999999999876 5566778999999999999999999999988842  2


Q ss_pred             ccccccccC
Q 045351          330 NRQLCLEFG  338 (349)
Q Consensus       330 ~~~~~~~~G  338 (349)
                      ..|+.+|.|
T Consensus       323 ~~YG~tE~~  331 (539)
T PRK07008        323 HAWGMTEMS  331 (539)
T ss_pred             ccccccccc
Confidence            334455554

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=3.4e-36  Score=285.70  Aligned_cols=293  Identities=20%  Similarity=0.221  Sum_probs=243.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +++.+.|...+  +.+ |+++|+++.  ++.+||+||.++++++|..|.+ .|+++|++|+++++|+.+++++++||++.
T Consensus         2 ~~~~~~l~~~a--~~~-p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~-~g~~~~~~v~~~~~~~~~~~~~~~a~~~~   75 (503)
T PRK04813          2 MDIIETIEEFA--QTQ-PDFPAYDYL--GEKLTYGQLKEDSDALAAFIDS-LKLPDKSPIIVFGHMSPEMLATFLGAVKA   75 (503)
T ss_pred             chHHHHHHHHH--HhC-CCceEEEeC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            46889999999  889 999999986  7899999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |++++|+++..+.+++.++++..+++++++++.......  ....+..+  ++.+....       ...........+++
T Consensus        76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~  144 (503)
T PRK04813         76 GHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEIL--GIPVITLD--ELKDIFAT-------GNPYDFDHAVKGDD  144 (503)
T ss_pred             CCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccccc--CCcEEehH--Hhhhhhhc-------cccccccccCCCCC
Confidence            999999999999999999999999999999876521111  11111111  11111100       01111122456788


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCC---CCH
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGK---FDF  264 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~  264 (349)
                      +++++|||||||.||+|.++|+++..........+. +..+++++...|++|..++..++.++..|+++++.++   +++
T Consensus       145 ~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~  223 (503)
T PRK04813        145 NYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFA-LPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANF  223 (503)
T ss_pred             cEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcC-CCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCH
Confidence            999999999999999999999999998888777777 7889999999999999999888899999999999864   589


Q ss_pred             HHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccCc
Q 045351          265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       265 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                      ..+++.++++++|++..+|.+++.+.... .....+++++|.++++|+++++++.+++.+.+++.   ..|+.+|.|.
T Consensus       224 ~~~~~~~~~~~~t~~~~~p~~~~~~~~~~-~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~  300 (503)
T PRK04813        224 KQLFETLPQLPINVWVSTPSFADMCLLDP-SFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATV  300 (503)
T ss_pred             HHHHHHHHHcCCeEEEeChHHHHHHHHhh-ccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchhee
Confidence            99999999999999999999998877665 55566788999999999999999999999998643   3345566553

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.7e-36  Score=286.18  Aligned_cols=302  Identities=18%  Similarity=0.169  Sum_probs=237.5

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.++|...+  +.+ |+++|+++.  ++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+.+++++++||+++
T Consensus        10 ~~l~~~l~~~a--~~~-p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~-~g~~~g~~V~i~~~n~~~~~~~~la~~~~   83 (540)
T PRK06164         10 DTLASLLDAHA--RAR-PDAVALIDE--DRPLSRAELRALVDRLAAWLAA-QGVRRGDRVAVWLPNCIEWVVLFLACARL   83 (540)
T ss_pred             CCHHHHHHHHH--HhC-CCCeEEecC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence            68999999999  999 999999975  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc-----ccccc------Cc-ceEEeCCC--Ccccccccc-CCCC-
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH-----KIPQL------KY-GTVLLDSP--EFEPLSATD-SLDY-  171 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~-----~~~~~------~~-~~~~~~~~--~~~~~~~~~-~~~~-  171 (349)
                      |++++|+++..+.+++.++++.++++++++++++..     .+...      .. .++.++..  ......... .... 
T Consensus        84 G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (540)
T PRK06164         84 GATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFA  163 (540)
T ss_pred             CcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCccccccccc
Confidence            999999999999999999999999999999876421     11110      11 12222210  000000000 0000 


Q ss_pred             -C--CCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHh
Q 045351          172 -Y--DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLR  248 (349)
Q Consensus       172 -~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~  248 (349)
                       .  ............++++++++|||||||.||+|.++|+++...+......++ +..++++++.+|++|.+|+..++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~g~~~~~~  242 (540)
T PRK06164        164 LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYG-YDPGAVLLAALPFCGVFGFSTLLG  242 (540)
T ss_pred             ccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcC-CCCCCEEEEcCCchhHHHHHHHHH
Confidence             0  000000112234688999999999999999999999999999888888887 689999999999999999988999


Q ss_pred             hhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccC-CCCCHHHHHHHHHHc-
Q 045351          249 SLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGG-AHLTLSVIRKYLQLN-  326 (349)
Q Consensus       249 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG-~~l~~~~~~~~~~~~-  326 (349)
                      ++..|+++++.+.+++..+++.|+++++|+++++|.++..|.+.  .....++++++.+.++| .+...++.+++.+.- 
T Consensus       243 ~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (540)
T PRK06164        243 ALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDT--AGERADFPSARLFGFASFAPALGELAALARARGV  320 (540)
T ss_pred             HHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHh--hcccCCCcceeeeeeccCCcchHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999887  33456788999887665 556666666666541 


Q ss_pred             CCcccccccccC
Q 045351          327 RTVNRQLCLEFG  338 (349)
Q Consensus       327 ~~~~~~~~~~~G  338 (349)
                      +..+.|+.+|.|
T Consensus       321 ~~~~~YG~tE~~  332 (540)
T PRK06164        321 PLTGLYGSSEVQ  332 (540)
T ss_pred             ceecceeecccc
Confidence            223445566654

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.2e-36  Score=290.04  Aligned_cols=292  Identities=14%  Similarity=0.146  Sum_probs=220.9

Q ss_pred             hhhhhhcccCCCCCCCCCeEEEeCCCC--ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           30 VTSYVFSLLESHAPPPDTTALIDTASR--HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        30 l~~~l~~~~~~~~~~~~~~ai~~~~~~--~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +.+.|...+  +++ |+++|+++.+.+  +++||+||.++++++|+.|.+ .  ++||+|+|+++|+++++++++||+++
T Consensus         4 ~~~~l~~~~--~~~-~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~-~--~~g~~V~l~~~~~~e~~~~~la~~~~   77 (525)
T PRK05851          4 LAAALSDAM--TAS-GRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLD-R--DRPGAVGLVGEPTVELVAAIQGAWLA   77 (525)
T ss_pred             HHHHHHHHh--cCC-CCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHh-c--CCCCeEEEEcCCCHHHHHHHHHHHHc
Confidence            788899999  889 999999987433  889999999999999999998 6  89999999999999999999999999


Q ss_pred             CCeEecCCCC-------CCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccc
Q 045351          108 GVVVSPCNPS-------CTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVR  180 (349)
Q Consensus       108 G~~~v~i~~~-------~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (349)
                      |+++++++..       ...+++.++++.+++++++++......+......+. +.  +.......       ... ...
T Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~--~~~~~~~~-------~~~-~~~  146 (525)
T PRK05851         78 GAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSVT-VH--DLATAAHT-------NRS-ASL  146 (525)
T ss_pred             CCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcccc-cc--cccccccc-------ccc-ccC
Confidence            9986543211       223455667899999999998765443322111110 10  01000000       000 001


Q ss_pred             cccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCC-CCcEEEEecChhhHhhHHHHHhhhhcCCEEEEc
Q 045351          181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS-RPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCM  259 (349)
Q Consensus       181 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~  259 (349)
                      ....++++++|+|||||||.||||++||+++...+......++ +. .+|++++.+|++|.+|+..++.+++.|+++++.
T Consensus       147 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~  225 (525)
T PRK05851        147 TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVG-LDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLA  225 (525)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhC-CCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEc
Confidence            1246789999999999999999999999999998888777777 67 899999999999999998888999999999998


Q ss_pred             C--CC--CHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc---C-----
Q 045351          260 G--KF--DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN---R-----  327 (349)
Q Consensus       260 ~--~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~---~-----  327 (349)
                      +  .|  ++..+++.++++++|++..+|.++..+.+........++++||.+++||+++++++.++|.+.+   +     
T Consensus       226 ~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~  305 (525)
T PRK05851        226 PTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGA  305 (525)
T ss_pred             CHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhh
Confidence            6  34  6789999999999998755444444443332122345688999999999999999999998752   2     


Q ss_pred             CcccccccccCc
Q 045351          328 TVNRQLCLEFGA  339 (349)
Q Consensus       328 ~~~~~~~~~~G~  339 (349)
                      ..+.|+.||.+.
T Consensus       306 ~~~~YG~TE~~~  317 (525)
T PRK05851        306 AAPSYGLAESTC  317 (525)
T ss_pred             cccccchhhhce
Confidence            234556666653

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-36  Score=287.83  Aligned_cols=303  Identities=23%  Similarity=0.265  Sum_probs=233.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.+++...+  +++ |+++|+.+.  ++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus         3 ~~l~~~~~~~a--~~~-p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~-~g~~~~~~v~v~~~n~~~~~~~~~a~~~~   76 (533)
T PRK07798          3 WNIADLFEAVA--DAV-PDRVALVCG--DRRLTYAELEERANRLAHYLIA-QGLGPGDHVGIYARNRIEYVEAMLGAFKA   76 (533)
T ss_pred             ccHHHHHHHHH--HhC-CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence            68999999999  999 999999997  8999999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----Cc-ceEEeCCCCcccccc---ccCCCCCCCCccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KY-GTVLLDSPEFEPLSA---TDSLDYYDDDEER  178 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  178 (349)
                      |++++|+++..+.+++.++++.+++++++++....+.+.+.     .. .++.++.........   .............
T Consensus        77 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (533)
T PRK07798         77 RAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPER  156 (533)
T ss_pred             CeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcC
Confidence            99999999999999999999999999999987655444321     11 122233211111000   0000000000001


Q ss_pred             cccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccc---------c-----CCCCCcEEEEecChhhHhhHH
Q 045351          179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVR---------A-----ARSRPAVVLCTVPYFHSYGFT  244 (349)
Q Consensus       179 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---------~-----~~~~~~~~l~~~p~~~~~g~~  244 (349)
                       ......++.++++|||||||.||+|+++|+++...........         .     ....+++++...|++|.+++.
T Consensus       157 -~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~  235 (533)
T PRK07798        157 -DFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW  235 (533)
T ss_pred             -CCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHH
Confidence             1111223457999999999999999999999986554322111         0     014668999999999999999


Q ss_pred             HHHhhhhcCCEEEEcC--CCCHHHHHHHHHhhcccEEEechHHHH-HHHhcCCC-CCCCCCcchheehccCCCCCHHHHH
Q 045351          245 CCLRSLGMGESLVCMG--KFDFGRMLKAVEEFRVSHVVLAPPVVL-KMARDGGT-MDGYDLSSIEVVASGGAHLTLSVIR  320 (349)
Q Consensus       245 ~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~-~l~~~~~~-~~~~~l~~lr~i~~gG~~l~~~~~~  320 (349)
                      .++.+++.|+++++.+  .+++..+++.++++++|++.++|..+. .+.... . ....+++++|.+++||+++++++.+
T Consensus       236 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~~i~~gG~~~~~~~~~  314 (533)
T PRK07798        236 AAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDAL-EARGPYDLSSLFAIASGGALFSPSVKE  314 (533)
T ss_pred             HHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHh-cccccCCCCceEEEEECCCCCCHHHHH
Confidence            9999999999999998  889999999999999999999987654 344433 2 3345678999999999999999999


Q ss_pred             HHHHHcCCc---ccccccccC
Q 045351          321 KYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       321 ~~~~~~~~~---~~~~~~~~G  338 (349)
                      ++.+.+++.   +.|+.+|.|
T Consensus       315 ~~~~~~~~~~~~~~YG~tE~~  335 (533)
T PRK07798        315 ALLELLPNVVLTDSIGSSETG  335 (533)
T ss_pred             HHHHHcCCCeEEeeecccccc
Confidence            999988543   224455544

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.1e-36  Score=340.47  Aligned_cols=289  Identities=17%  Similarity=0.213  Sum_probs=244.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|..++  .++ |+++|+++.  +..+||+||.++++++|+.|.+ .|+++|++|+|+++++.++++++||++++
T Consensus      3720 ~~~~~~~~~~~--~~~-p~~~Av~~~--~~~~tY~eL~~~~~~la~~L~~-~gv~~~~~V~v~~~~s~~~~v~~lavlka 3793 (4334)
T PRK05691       3720 QSYVRLFEAQV--AAH-PQRIAASCL--DQQWSYAELNRAANRLGHALRA-AGVGVDQPVALLAERGLDLLGMIVGSFKA 3793 (4334)
T ss_pred             cCHHHHHHHHH--HhC-CCceEEEcC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHhh
Confidence            68999999999  999 999999997  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccC-------c-ceEEeCCCCccccccccCCCCCCCCcccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK-------Y-GTVLLDSPEFEPLSATDSLDYYDDDEERV  179 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (349)
                      |++++|+++..+.+++.++++.+++++++++...........       . .+...+.     .....      ......
T Consensus      3794 G~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~------~~~~~~ 3862 (4334)
T PRK05691       3794 GAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE-----VQAGE------VASHNP 3862 (4334)
T ss_pred             CcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc-----ccccc------ccccCC
Confidence            999999999999999999999999999999886544322210       0 1111111     00000      011112


Q ss_pred             ccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEc
Q 045351          180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCM  259 (349)
Q Consensus       180 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~  259 (349)
                      .....+++.+||+|||||||.||||+++|+++.+.+.+....++ +.+.++++...+++|+.+++.++.+|+.|+++++.
T Consensus      3863 ~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~ 3941 (4334)
T PRK05691       3863 GIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLA-LSEADVIAQTASQSFDISVWQFLAAPLFGARVEIV 3941 (4334)
T ss_pred             CCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcC-CCccceEEEecCCchhHHHHHHHHHHhCCCEEEEc
Confidence            23457899999999999999999999999999999998888888 79999999999999999999999999999999998


Q ss_pred             C---CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCcccccccc
Q 045351          260 G---KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLE  336 (349)
Q Consensus       260 ~---~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~  336 (349)
                      +   ..++..+++.++++++|++.++|+++..++...    ...+++||.+++||+++++++.++|.+.+++.+  +++.
T Consensus      3942 ~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~----~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~--l~n~ 4015 (4334)
T PRK05691       3942 PNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED----RQALDGLRWMLPTGEAMPPELARQWLQRYPQIG--LVNA 4015 (4334)
T ss_pred             CccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc----cccCCCceEEEecCCcCCHHHHHHHHHhCCCCe--EEeC
Confidence            5   358999999999999999999999999987653    234788999999999999999999999887542  4455


Q ss_pred             cCce
Q 045351          337 FGAP  340 (349)
Q Consensus       337 ~G~~  340 (349)
                      ||.+
T Consensus      4016 YG~T 4019 (4334)
T PRK05691       4016 YGPA 4019 (4334)
T ss_pred             ccCc
Confidence            5543

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.6e-37  Score=262.75  Aligned_cols=292  Identities=20%  Similarity=0.232  Sum_probs=248.6

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      +.|+.+.|.+.+  .++ ||++|++++  ++.+||++|.+++.++|..|++ .||++||+|++.+||..+|+++++|+++
T Consensus        27 d~~l~d~L~~~A--~~~-pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~-lGi~~Gd~vlvQLpN~~ef~~~~FALlr  100 (542)
T COG1021          27 DRTLTDILTDHA--ARY-PDRIAVIDG--ERRLSYAELDQRADRLAAGLRR-LGIKPGDTVLVQLPNVAEFYITFFALLR  100 (542)
T ss_pred             CCcHHHHHHHHH--hhc-CCceEEecC--cccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCchHHHHHHHHHHHH
Confidence            479999999999  999 999999998  7889999999999999999999 9999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccc--------ccccc--cCcceEEeCC-CC-ccccccccCCCCCCC
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA--------HKIPQ--LKYGTVLLDS-PE-FEPLSATDSLDYYDD  174 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~--------~~~~~--~~~~~~~~~~-~~-~~~~~~~~~~~~~~~  174 (349)
                      +|+.+|..-|.....|+.+..+.++++.++.++...        ..+..  ...+.+.+.. .+ ...+......   ..
T Consensus       101 lGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~---~a  177 (542)
T COG1021         101 LGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCH---PA  177 (542)
T ss_pred             cCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhC---cc
Confidence            999999999999999999999999999999876421        11111  1223333332 21 1111111100   01


Q ss_pred             CccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH--HHHHhhhhc
Q 045351          175 DEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF--TCCLRSLGM  252 (349)
Q Consensus       175 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~--~~~~~~l~~  252 (349)
                      .......+.++++++++..|-||||.||.|..||.....+...-.+..+ +..+.++|+.+|..|-+-+  -+.++.++.
T Consensus       178 ~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~-~~~~tvyL~~LP~AHNfplssPG~LGv~~a  256 (542)
T COG1021         178 GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICG-FDQQTVYLCALPAAHNFPLSSPGALGVFLA  256 (542)
T ss_pred             ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhC-cCccceEEEecccccCCCCCCcchhheeee
Confidence            1222334677889999999999999999999999999988888888888 7999999999999999998  489999999


Q ss_pred             CCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc
Q 045351          253 GESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV  329 (349)
Q Consensus       253 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~  329 (349)
                      |+++|+.+..+|...+.+|+++++|+..++|.....++... +....+++|||.+-+||+.+++.+.++....+++.
T Consensus       257 gG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~-e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~  332 (542)
T COG1021         257 GGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAA-EWERADLSSLRLLQVGGARLSATLARRVPAVLGCQ  332 (542)
T ss_pred             ccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhh-hcccCCchheeEEeecCcccCHHHHhhchhhhCch
Confidence            99999999999999999999999999999999999999888 88899999999999999999999999999988654

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=4.9e-36  Score=285.61  Aligned_cols=304  Identities=18%  Similarity=0.117  Sum_probs=234.8

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC---CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA---SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL  104 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~---~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~  104 (349)
                      .|+.++++..+  +++ |+++|+++.+   +.+.+||+||.++++++|+.|.+ .|+++||+|+++++|+.+++++++||
T Consensus         7 ~~l~~~~~~~a--~~~-p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~-~g~~~~~~v~i~~~n~~~~~~~~la~   82 (517)
T PRK08008          7 QHLRQMWDDLA--DVY-GHKTALIFESSGGVVRRYSYLELNEEINRTANLFYS-LGIRKGDKVALHLDNCPEFIFCWFGL   82 (517)
T ss_pred             ccHHHHHHHHH--HHC-CCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            58999999999  999 9999998753   23789999999999999999998 99999999999999999999999999


Q ss_pred             HhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc------Ccc-eEEeCCCC--ccccccccCCCCCCCC
Q 045351          105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL------KYG-TVLLDSPE--FEPLSATDSLDYYDDD  175 (349)
Q Consensus       105 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------~~~-~~~~~~~~--~~~~~~~~~~~~~~~~  175 (349)
                      +++|++++++++..+.+++.++++.+++++++++.+..+.+.+.      ..+ ++..+...  ................
T Consensus        83 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (517)
T PRK08008         83 AKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPA  162 (517)
T ss_pred             HHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCc
Confidence            99999999999999999999999999999999988765443321      111 22222110  0000000000000000


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGE  254 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~  254 (349)
                      .........++++++|+|||||||.||+|++||+++............ +..++++++.+|++|..+. ..++.++..|+
T Consensus       163 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~  241 (517)
T PRK08008        163 TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCA-LRDDDVYLTVMPAFHIDCQCTAAMAAFSAGA  241 (517)
T ss_pred             cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcC-CCCCCeEEEecCcHHHHHHHHHHHHHHhcCc
Confidence            001112345689999999999999999999999999865443333333 5788999999999998777 67788999999


Q ss_pred             EEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccc
Q 045351          255 SLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQ  332 (349)
Q Consensus       255 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~  332 (349)
                      ++++.+++++..+++.++++++|.+.++|.+++.+...+ ........+++.+.+++ +++.+....+.+.++.  .+.|
T Consensus       242 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Y  319 (517)
T PRK08008        242 TFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQP-PSANDRQHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSY  319 (517)
T ss_pred             EEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCC-CccccccccceeeEEec-CCCHHHHHHHHHHhCCeEEeec
Confidence            999999999999999999999999999999999998775 44444456788777754 7999999999988743  2334


Q ss_pred             cccccC
Q 045351          333 LCLEFG  338 (349)
Q Consensus       333 ~~~~~G  338 (349)
                      +.+|.|
T Consensus       320 G~tE~~  325 (517)
T PRK08008        320 GMTETI  325 (517)
T ss_pred             cccccc
Confidence            455554

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=7.8e-36  Score=285.27  Aligned_cols=284  Identities=19%  Similarity=0.206  Sum_probs=232.3

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+++...+  +   |+++|+++.  ++.+||+||.++++++|+.|.+ .|+++|++|+++++|+++++++++||+++
T Consensus        25 ~~~~~~~~~~a--~---p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~v~~~n~~~~~~~~la~~~~   96 (536)
T PRK10946         25 LPLTDILTRHA--A---SDAIAVICG--ERQFSYRELNQASDNLACSLRR-QGIKPGDTALVQLGNVAEFYITFFALLKL   96 (536)
T ss_pred             ccHHHHHHHhh--C---CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCChHHHHHHHHHHHHc
Confidence            67999998878  4   799999997  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccc--------ccccc--cCcceEEeCCC----CccccccccCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA--------HKIPQ--LKYGTVLLDSP----EFEPLSATDSLDYYD  173 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~--------~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~  173 (349)
                      |++++++.+.....++..+++.++++++++++...        +.+..  .....+.....    .+......       
T Consensus        97 G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  169 (536)
T PRK10946         97 GVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAINH-------  169 (536)
T ss_pred             CeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHHhhC-------
Confidence            99988888777888999999999999999986431        11111  01122222211    11111111       


Q ss_pred             CCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHH--HHHhhhh
Q 045351          174 DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT--CCLRSLG  251 (349)
Q Consensus       174 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~--~~~~~l~  251 (349)
                      ...........++++++++|||||||.||||++||+++...+......++ +..++++++.+|++|.+++.  .++.++.
T Consensus       170 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~-~~~~~~~l~~~p~~h~~~~~~~~~~~~l~  248 (536)
T PRK10946        170 PAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICG-FTPQTRYLCALPAAHNYPMSSPGALGVFL  248 (536)
T ss_pred             cccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcC-CCCCceEEEecCccccccchhhhHHHHhh
Confidence            01111122456789999999999999999999999999999988877777 78899999999999999883  5788999


Q ss_pred             cCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcC-CCCCCCCCcchheehccCCCCCHHHHHHHHHHcC
Q 045351          252 MGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-GTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR  327 (349)
Q Consensus       252 ~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~-~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  327 (349)
                      .|+++++.+.+++..+++.++++++|++.++|.++..|+... .......++++|.+++||+++++++.+++.+.++
T Consensus       249 ~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g  325 (536)
T PRK10946        249 AGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELG  325 (536)
T ss_pred             cCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcC
Confidence            999999998899999999999999999999999999998752 0333455789999999999999999999998884

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.3e-36  Score=312.91  Aligned_cols=304  Identities=18%  Similarity=0.210  Sum_probs=245.7

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.+.+.+  +++ |+++|+++. .++.+||+||.++++++|+.|++  ++++||+|+++++|+++++++++||+++
T Consensus       615 ~~l~~~~~~~a--~~~-p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~--~~~~g~~V~i~~~n~~~~~~~~la~~~~  688 (1146)
T PRK08633        615 PPLAEAWIDTA--KRN-WSRLAVADS-TGGELSYGKALTGALALARLLKR--ELKDEENVGILLPPSVAGALANLALLLA  688 (1146)
T ss_pred             CCHHHHHHHHH--Hhc-CCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH--hCCCCCeEEEECCCchHHHHHHHHHHHc
Confidence            68999999999  889 999999975 36899999999999999999987  4899999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc------c--CcceEEeCCCC--cc---ccccccCCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ------L--KYGTVLLDSPE--FE---PLSATDSLDYYDD  174 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~------~--~~~~~~~~~~~--~~---~~~~~~~~~~~~~  174 (349)
                      |++++|+++..+.+++.+++++++++++++++...+.+.+      .  ..+++..+...  ..   .+...........
T Consensus       689 G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  768 (1146)
T PRK08633        689 GKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPA  768 (1146)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCCH
Confidence            9999999999999999999999999999998765554431      1  11222222100  00   0000000000000


Q ss_pred             C--ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhh
Q 045351          175 D--EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLG  251 (349)
Q Consensus       175 ~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~  251 (349)
                      .  .........++++++++|||||||.||+|.+||+++...+......++ ..++|++++.+|++|.+|+ ..++.++.
T Consensus       769 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~g~~~~~~~~l~  847 (1146)
T PRK08633        769 RLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFN-LRNDDVILSSLPFFHSFGLTVTLWLPLL  847 (1146)
T ss_pred             HHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcC-CCCCCEEEEcCcHHHHHhHHHHHHHHHH
Confidence            0  000013456799999999999999999999999999999888777777 6889999999999999999 45889999


Q ss_pred             cCCEEEEcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--C
Q 045351          252 MGESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--T  328 (349)
Q Consensus       252 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~  328 (349)
                      .|+++++.+ .+++..+++.++++++|++.++|.+++.+.+.. ...+.+++++|.+++||+++++++.+++.+.++  .
T Consensus       848 ~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~  926 (1146)
T PRK08633        848 EGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNK-KLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRI  926 (1146)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcc-ccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCe
Confidence            999999875 579999999999999999999999999999876 566677899999999999999999999999884  3


Q ss_pred             cccccccccCc
Q 045351          329 VNRQLCLEFGA  339 (349)
Q Consensus       329 ~~~~~~~~~G~  339 (349)
                      .+.|+.+|.|.
T Consensus       927 ~~~YG~tE~~~  937 (1146)
T PRK08633        927 LEGYGATETSP  937 (1146)
T ss_pred             ecccccccCcc
Confidence            34456677653

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-36  Score=281.95  Aligned_cols=284  Identities=21%  Similarity=0.264  Sum_probs=229.3

Q ss_pred             cccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCC
Q 045351           36 SLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCN  115 (349)
Q Consensus        36 ~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~  115 (349)
                      .++  +.+ ||++|+.+..+++.+||.||.+++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++|++
T Consensus         3 ~~a--~~~-p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~   78 (488)
T PRK09088          3 FHA--RLQ-PQRLAAVDLALGRRWTYAELDALVGRLAAVLRR-RGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLN   78 (488)
T ss_pred             hhh--hhC-CCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeC
Confidence            345  667 999999875457899999999999999999998 9999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCCcEEEEecc
Q 045351          116 PSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSS  195 (349)
Q Consensus       116 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  195 (349)
                      +..+.+++.++++.++++++++++......    ...+     .++++......    .. ........++++++++|||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~----~~~~-----~~~~~~~~~~~----~~-~~~~~~~~~~~~~~i~~TS  144 (488)
T PRK09088         79 WRLSASELDALLQDAEPRLLLGDDAVAAGR----TDVE-----DLAAFIASADA----LE-PADTPSIPPERVSLILFTS  144 (488)
T ss_pred             ccCCHHHHHHHHHhCCCCEEEEcchhhccc----cccc-----chhhhhhhccc----cc-cccCCCCCCCCceEEEeCC
Confidence            999999999999999999999987543211    0011     11111111000    00 0111234568899999999


Q ss_pred             CCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHH--
Q 045351          196 GTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVE--  272 (349)
Q Consensus       196 GtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~--  272 (349)
                      ||||.||+|.++|+++...+........ ...++++++.+|++|.+|+ ..++.++..|+++++.+.+++..++..+.  
T Consensus       145 GTTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~  223 (488)
T PRK09088        145 GTSGQPKGVMLSERNLQQTAHNFGVLGR-VDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDP  223 (488)
T ss_pred             CCCCCCcEEEEehHHHHHHHHHHHHhhC-CCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhh
Confidence            9999999999999999887776666555 6789999999999999999 56778899999999998899999999886  


Q ss_pred             hhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHH-cCCcccccccccCc
Q 045351          273 EFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL-NRTVNRQLCLEFGA  339 (349)
Q Consensus       273 ~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~-~~~~~~~~~~~~G~  339 (349)
                      ++++|++..+|.+++.+.+.+ ......++++|.+++||++++.+..+++.+. .+..+.|+.+|.|.
T Consensus       224 ~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~  290 (488)
T PRK09088        224 ALGITHYFCVPQMAQAFRAQP-GFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGT  290 (488)
T ss_pred             ccCCcEEeeHHHHHHHHHhCc-CcCccccccceEEEecCCCCCHHHHHHHHHhCCceeeeeccccccc
Confidence            488999999999999998875 5555667899999999999999998888764 23334455666653

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=4.1e-36  Score=338.18  Aligned_cols=289  Identities=20%  Similarity=0.249  Sum_probs=245.3

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|..++  ..+ |+++|+++.  ++.+||+||.++++++|+.|.+ .|+++|++|+++++|+.++++++||++++
T Consensus      1131 ~~l~~~~~~~a--~~~-p~~~Al~~~--~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iv~~lailka 1204 (4334)
T PRK05691       1131 AWLPELLNEQA--RQT-PERIALVWD--GGSLDYAELHAQANRLAHYLRD-KGVGPDVCVAIAAERSPQLLVGLLAILKA 1204 (4334)
T ss_pred             CCHHHHHHHHH--HhC-CCCeEEEEC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            68999999999  999 999999987  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-CcceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      |++++|+++..+.+++.++++++++++++++......+... ....+..+.......           ..........++
T Consensus      1205 G~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 1273 (4334)
T PRK05691       1205 GGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSLHLDSW-----------PSQAPGLHLHGD 1273 (4334)
T ss_pred             CCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeecccccccc-----------CCCCCCCCCCCC
Confidence            99999999999999999999999999999988765544332 112222221111000           001111235678


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC---CCC
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG---KFD  263 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~---~~~  263 (349)
                      ++++++|||||||.||||+++|+++.+.+.+....++ +.++++++...|++|+.++..++.+|+.|+++++.+   .++
T Consensus      1274 ~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~ 1352 (4334)
T PRK05691       1274 NLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYA-LDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRD 1352 (4334)
T ss_pred             CeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcC-CCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCC
Confidence            9999999999999999999999999999988888887 789999999999999999999999999999999985   468


Q ss_pred             HHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCcccccccccCc
Q 045351          264 FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGA  339 (349)
Q Consensus       264 ~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~G~  339 (349)
                      +..+++.++++++|++.++|++++.|.+.. .  ...+++||.+++||+++++++.++|.+.+|+.  .+++.||.
T Consensus      1353 ~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~-~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~--~l~n~YG~ 1423 (4334)
T PRK05691       1353 PQRIAELVQQYGVTTLHFVPPLLQLFIDEP-L--AAACTSLRRLFSGGEALPAELRNRVLQRLPQV--QLHNRYGP 1423 (4334)
T ss_pred             HHHHHHHHHHcCCeEEECcHHHHHHHHhCc-c--cccCCcccEEEEeecCCCHHHHHHHHHhCCCc--EEEeCCCc
Confidence            999999999999999999999999998754 2  34578999999999999999999999998654  23444443

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2e-35  Score=282.91  Aligned_cols=304  Identities=22%  Similarity=0.268  Sum_probs=234.8

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.+.+...+  ..+ |+++|+++.  ++.+||.||.++++++|+.|.+ .|+.+||+|+++++|+.+++++++||+++
T Consensus        21 ~~~~~~~~~~~--~~~-p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~~   94 (541)
T TIGR03205        21 GTLPDLLSKAA--ADY-GPRPALEFR--DRPITYTELEAMAETAAAALLR-AGYGKDASVALYLGNTPDHPINFFGALKA   94 (541)
T ss_pred             CCHHHHHHHHH--HHc-CCCceEEEC--CcEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence            58999999999  889 999999986  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccc--ccc----cc-cCcceEEeCCCCccccccc-----cCC------
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA--HKI----PQ-LKYGTVLLDSPEFEPLSAT-----DSL------  169 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~----~~-~~~~~~~~~~~~~~~~~~~-----~~~------  169 (349)
                      |++++|+++..+.+++.++++.++++++++++...  ...    .. .-..+++.+...+......     ...      
T Consensus        95 G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (541)
T TIGR03205        95 GARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYA  174 (541)
T ss_pred             CeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHH
Confidence            99999999999999999999999999999976311  110    00 0112222222111100000     000      


Q ss_pred             CC-CCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc-----cccCCCCCcEEEEecChhhHhhH
Q 045351          170 DY-YDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA-----VRAARSRPAVVLCTVPYFHSYGF  243 (349)
Q Consensus       170 ~~-~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-----~~~~~~~~~~~l~~~p~~~~~g~  243 (349)
                      .+ .............+++.++++|||||||.||+|+++|+++.........     ... ....+++++..|++|.+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~~~  253 (541)
T TIGR03205       175 DFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRAT-RGDVERVICVLPLFHIYAL  253 (541)
T ss_pred             HHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhccccccc-CCCCceEEEeccHHHHHHH
Confidence            00 0000011112356789999999999999999999999998765432211     111 2345789999999999998


Q ss_pred             -HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHH
Q 045351          244 -TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKY  322 (349)
Q Consensus       244 -~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~  322 (349)
                       ..++.++..|+++++...+++..+++.|+++++|++.++|.++..|.+.. .....+++++|.+++||+++++++.+++
T Consensus       254 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~l~~i~~gg~~~~~~~~~~~  332 (541)
T TIGR03205       254 TVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDP-SLEKRDLSSLATIGSGGAPLPVEVANFF  332 (541)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCc-cccccCccccceEEEccccCCHHHHHHH
Confidence             56778999999999998899999999999999999999999999998765 4555678899999999999999999998


Q ss_pred             HHHcC--CcccccccccCc
Q 045351          323 LQLNR--TVNRQLCLEFGA  339 (349)
Q Consensus       323 ~~~~~--~~~~~~~~~~G~  339 (349)
                      .+.++  ....|+.+|.|.
T Consensus       333 ~~~~~~~~~~~YG~TE~~~  351 (541)
T TIGR03205       333 ERKTGLKLKSGWGMTETCS  351 (541)
T ss_pred             HHHhCCCeecccccccCCc
Confidence            88774  233455666553

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.3e-35  Score=285.57  Aligned_cols=301  Identities=18%  Similarity=0.215  Sum_probs=227.8

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +|..+.+...+  ..+ |+++|++++  ++.+||+||.++++++|..|.+ .|+++||+|+++++|+.+++++++||+++
T Consensus        20 ~~~~~~~~~~~--~~~-p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~   93 (567)
T PLN02479         20 LTPLWFLERAA--VVH-PTRKSVVHG--SVRYTWAQTYQRCRRLASALAK-RSIGPGSTVAVIAPNIPAMYEAHFGVPMA   93 (567)
T ss_pred             cCHHHHHHHHH--hhC-CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHhC
Confidence            56888888888  889 999999986  6899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc------------cCc-ceEEeCCCCcc--c---cccccCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ------------LKY-GTVLLDSPEFE--P---LSATDSL  169 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~------------~~~-~~~~~~~~~~~--~---~~~~~~~  169 (349)
                      |++++|+++..+.+++.++++.++++++++++...+...+            ... .++.++.....  .   .......
T Consensus        94 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (567)
T PLN02479         94 GAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAI  173 (567)
T ss_pred             CcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcc
Confidence            9999999999999999999999999999998765432211            001 12222211000  0   0000000


Q ss_pred             CC----CCCCcc-ccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHH
Q 045351          170 DY----YDDDEE-RVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT  244 (349)
Q Consensus       170 ~~----~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~  244 (349)
                      .+    ...... ........++.++++|||||||.||||++||+++..........++ +..++++++..|++|.+++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~h~~~~~  252 (567)
T PLN02479        174 EYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWG-MNEGAVYLWTLPMFHCNGWC  252 (567)
T ss_pred             cHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcC-CCCCCEEEEecchhhhhhHH
Confidence            00    000000 0011223346788999999999999999999998876665555666 68889999999999999985


Q ss_pred             HHHh-hhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCC-CCCcchheehccCCCCCHHHHHHH
Q 045351          245 CCLR-SLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG-YDLSSIEVVASGGAHLTLSVIRKY  322 (349)
Q Consensus       245 ~~~~-~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~-~~l~~lr~i~~gG~~l~~~~~~~~  322 (349)
                      ..+. .+..|.+ +++..+++..+++.++++++|++.++|.+++.|.+.. .... .++++++.++++|+++++++.+++
T Consensus       253 ~~~~~~~~~g~~-~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~l~~~~~~G~~~~~~~~~~~  330 (567)
T PLN02479        253 FTWTLAALCGTN-ICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAP-KSETILPLPRVVHVMTAGAAPPPSVLFAM  330 (567)
T ss_pred             HHHHHHhhcCce-EeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhh-hhcccccccceeEEEEcCCCCCHHHHHHH
Confidence            4443 4555554 4556789999999999999999999999999998764 3222 257899999999999999999998


Q ss_pred             HHH-cCCccccccccc
Q 045351          323 LQL-NRTVNRQLCLEF  337 (349)
Q Consensus       323 ~~~-~~~~~~~~~~~~  337 (349)
                      .+. .+..+.|+.+|.
T Consensus       331 ~~~~~~~~~~yG~tE~  346 (567)
T PLN02479        331 SEKGFRVTHTYGLSET  346 (567)
T ss_pred             HhcCCceecccccccc
Confidence            764 223334455665

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-35  Score=284.86  Aligned_cols=304  Identities=24%  Similarity=0.320  Sum_probs=234.5

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +++.+.+...+  ..+ |+++|+++.  ++.+||+||++++.++|+.|.+ .|+++||+|+++++|+.++++++|||+++
T Consensus        24 ~~~~~~~~~~a--~~~-p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~   97 (563)
T PRK06710         24 QPLHKYVEQMA--SRY-PEKKALHFL--GKDITFSVFHDKVKRFANYLQK-LGVEKGDRVAIMLPNCPQAVIGYYGTLLA   97 (563)
T ss_pred             ccHHHHHHHHH--HHC-CCceEEEec--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence            57899999999  889 999999997  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc----CcceEEeC-CCCccc----------------cccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL----KYGTVLLD-SPEFEP----------------LSAT  166 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~-~~~~~~----------------~~~~  166 (349)
                      |++++|++|..+.+++.++++.++++++++++.....+...    ....+.+. ...+..                ....
T Consensus        98 G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (563)
T PRK06710         98 GGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVK  177 (563)
T ss_pred             CeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhccccccccc
Confidence            99999999999999999999999999999987543322210    11111110 000000                0000


Q ss_pred             cCC--------CCCCCC-ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc-cccCCCCCcEEEEecC
Q 045351          167 DSL--------DYYDDD-EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA-VRAARSRPAVVLCTVP  236 (349)
Q Consensus       167 ~~~--------~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~~l~~~p  236 (349)
                      .+.        ...... .........+++.++++|||||||.||+|.++|+++......... .+.....++++++..|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p  257 (563)
T PRK06710        178 VSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLP  257 (563)
T ss_pred             ccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCc
Confidence            000        000000 000011123578999999999999999999999999765433222 2221234568899999


Q ss_pred             hhhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCC
Q 045351          237 YFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLT  315 (349)
Q Consensus       237 ~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~  315 (349)
                      ++|.+|+ ..++.+++.|+++++.+.+++..+++.|+++++|++.++|.++..+.+.. .....+++++|.+++||++++
T Consensus       258 ~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~v~~gg~~~~  336 (563)
T PRK06710        258 FFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSP-LLKEYDISSIRACISGSAPLP  336 (563)
T ss_pred             hHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCC-ccccCChhhhhheeeCCCcCC
Confidence            9999998 55667999999999998899999999999999999999999999999876 555667789999999999999


Q ss_pred             HHHHHHHHHHcC--CcccccccccC
Q 045351          316 LSVIRKYLQLNR--TVNRQLCLEFG  338 (349)
Q Consensus       316 ~~~~~~~~~~~~--~~~~~~~~~~G  338 (349)
                      +++.+++.+.++  ..+.|+.+|.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~YG~tE~~  361 (563)
T PRK06710        337 VEVQEKFETVTGGKLVEGYGLTESS  361 (563)
T ss_pred             HHHHHHHHHhhCCCEecccccccCc
Confidence            999999988874  33445556654

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-35  Score=284.48  Aligned_cols=305  Identities=21%  Similarity=0.255  Sum_probs=233.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|...+  ..+ |+++|+++.  ++.+||.||.++++++|+.|.++.|+++||+|+++++|+++++++++||+++
T Consensus        24 ~~~~~~l~~~~--~~~-p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~   98 (562)
T PRK12492         24 KSVVEVFERSC--KKF-ADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRA   98 (562)
T ss_pred             CcHHHHHHHHH--HhC-CCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            57999999999  889 999999876  7899999999999999999987239999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc----Ccc-eEEeCC----CCcccc--------cccc-CC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL----KYG-TVLLDS----PEFEPL--------SATD-SL  169 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----~~~-~~~~~~----~~~~~~--------~~~~-~~  169 (349)
                      |++++|+++..+.+++.++++.++++++++++.....+...    ... ++....    ..+...        .... ..
T Consensus        99 G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
T PRK12492         99 GLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPA  178 (562)
T ss_pred             CeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccc
Confidence            99999999999999999999999999999876543322110    000 000000    000000        0000 00


Q ss_pred             -CCC----------C-CCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccC--------CC-CC
Q 045351          170 -DYY----------D-DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAA--------RS-RP  228 (349)
Q Consensus       170 -~~~----------~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--------~~-~~  228 (349)
                       ...          . ............+++++|+|||||||.||||+++|+++...+......+..        +. .+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (562)
T PRK12492        179 YHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQ  258 (562)
T ss_pred             cCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCC
Confidence             000          0 000011124566899999999999999999999999998776654433320        11 24


Q ss_pred             cEEEEecChhhHhhH-HHHHhhhhcCCEEEEc-CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchhe
Q 045351          229 AVVLCTVPYFHSYGF-TCCLRSLGMGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEV  306 (349)
Q Consensus       229 ~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~  306 (349)
                      ++++..+|++|.+|+ ..++..+..|++.++. ..+++..+++.++++++|++..+|.++..|...+ .....+++++|.
T Consensus       259 ~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~~~lr~  337 (562)
T PRK12492        259 EVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHP-GFKDLDFSALKL  337 (562)
T ss_pred             eEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCc-CcccccccceeE
Confidence            578999999999999 5677788899987766 4578999999999999999999999999999886 666677899999


Q ss_pred             ehccCCCCCHHHHHHHHHHcCC--cccccccccC
Q 045351          307 VASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFG  338 (349)
Q Consensus       307 i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G  338 (349)
                      +++||+++++++.+.+.+.++.  .+.|+.+|.|
T Consensus       338 ~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  371 (562)
T PRK12492        338 TNSGGTALVKATAERWEQLTGCTIVEGYGLTETS  371 (562)
T ss_pred             EEeccccCCHHHHHHHHHHhCCceeeccCccccC
Confidence            9999999999999999987742  2334556654

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-35  Score=282.37  Aligned_cols=303  Identities=18%  Similarity=0.188  Sum_probs=233.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +++.++|...+  +.+ |+++|+++.  ++.+||++|.+++.++|+.|.+ .|+++||+|+++++|++++++++|||+++
T Consensus        18 ~~~~~~~~~~~--~~~-~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~~~~   91 (545)
T PRK08162         18 LTPLSFLERAA--EVY-PDRPAVIHG--DRRRTWAETYARCRRLASALAR-RGIGRGDTVAVLLPNIPAMVEAHFGVPMA   91 (545)
T ss_pred             CCHHHHHHHHH--HHC-CCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence            68889999999  889 999999987  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----c-CcceEEeCCC--Cccc--cccccC-CCCCCC-Cc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----L-KYGTVLLDSP--EFEP--LSATDS-LDYYDD-DE  176 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~-~~~~~~~~~~--~~~~--~~~~~~-~~~~~~-~~  176 (349)
                      |++++|+++..+.+++.++++.+++++++++.+....+.+    . ..+.+.++..  ....  ...... ..+... ..
T Consensus        92 G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (545)
T PRK08162         92 GAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDP  171 (545)
T ss_pred             CcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCc
Confidence            9999999999999999999999999999999876554332    1 1112222211  0000  000000 000000 00


Q ss_pred             c-ccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCE
Q 045351          177 E-RVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGES  255 (349)
Q Consensus       177 ~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~  255 (349)
                      . ........++.++|+|||||||.||||+++|+++..........+. +..++++++.+|++|.+|+...+...+.|++
T Consensus       172 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~-~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~  250 (545)
T PRK08162        172 DFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWG-MPKHPVYLWTLPMFHCNGWCFPWTVAARAGT  250 (545)
T ss_pred             cccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcC-CCCCCeeEeccCcHhhhhHHHHHHHHHHccE
Confidence            0 0111233457899999999999999999999998777666555555 6788899999999999998555555567777


Q ss_pred             EEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc-CCcccccc
Q 045351          256 LVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLC  334 (349)
Q Consensus       256 ~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~  334 (349)
                      .++...+++..+++.++++++|++.++|.+++.|.+.. ......+.+.+.+++||+++++++.+.+.+.. +..+.|+.
T Consensus       251 ~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~  329 (545)
T PRK08162        251 NVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAP-AEWRAGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGL  329 (545)
T ss_pred             EEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCc-cccccCCccceEEEECCCCCCHHHHHHHHHhCCceeecccc
Confidence            77777899999999999999999999999999999875 44334456667778999999999999887642 23344555


Q ss_pred             cccC
Q 045351          335 LEFG  338 (349)
Q Consensus       335 ~~~G  338 (349)
                      +|.+
T Consensus       330 tE~~  333 (545)
T PRK08162        330 TETY  333 (545)
T ss_pred             cccC
Confidence            6654

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-35  Score=285.57  Aligned_cols=284  Identities=15%  Similarity=0.139  Sum_probs=221.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCC--CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTAS--RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLF  105 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~  105 (349)
                      .++.+.+...+  ..+ ++..++ +.+.  .+.+||.||++++.++|+.|.+ .|+++||+|+++++|+++++++++||+
T Consensus        21 ~~~~~~~~~~~--~~~-~~~~~~-~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~gi~~gd~V~l~~~n~~~~~~~~lA~~   95 (579)
T PRK09192         21 PTLVEALDYAA--LGE-AGMNFY-DRRGQLEEALPYQTLRARAEAGARRLLA-LGLKPGDRVALIAETDGDFVEAFFACQ   95 (579)
T ss_pred             hhHHHHHHHhh--ccC-CceEEE-ecCCCEEEEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence            68999999999  778 766554 4322  2789999999999999999998 999999999999999999999999999


Q ss_pred             hcCCeEecCCCCCC-------HHHHHHHHhhcCCeEEEEcCccccccccc--Ccc-eEEeCCCCccccccccCCCCCCCC
Q 045351          106 SLGVVVSPCNPSCT-------IPEILRQIHLSKPVIAFATHDTAHKIPQL--KYG-TVLLDSPEFEPLSATDSLDYYDDD  175 (349)
Q Consensus       106 ~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~i~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~  175 (349)
                      ++|++++|+++..+       .+++.++++.++++++++++...+.+...  ... .+...   +..+....       .
T Consensus        96 ~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~  165 (579)
T PRK09192         96 YAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLS---HAWFKALP-------E  165 (579)
T ss_pred             HcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccceee---hhhhcccC-------C
Confidence            99999999976443       68999999999999999988655443321  111 11111   11111110       0


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc-cccCCCCCcEEEEecChhhHhhH-HHHHhhhhcC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA-VRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMG  253 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G  253 (349)
                      .........++++++++|||||||.||||.++|++++..+..... .++ +..+++++.++|++|.+|+ ..++.++..|
T Consensus       166 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g  244 (579)
T PRK09192        166 ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLK-VRPGDRCVSWLPFYHDMGLVGFLLTPVATQ  244 (579)
T ss_pred             CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhccc-CCCCCeEEEeCCCCCcchhHHHHHHHHHhC
Confidence            001112346689999999999999999999999999998877666 566 7889999999999999999 4566789999


Q ss_pred             CEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcC--CCCCCCCCcchheehccCCCCCHHHHHHHHHHcC
Q 045351          254 ESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG--GTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR  327 (349)
Q Consensus       254 ~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~--~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  327 (349)
                      +++++.+.    .++..+++.+.+++++.++..|.++..+....  ......+++++|.+++||+++++.+++.+.+.++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~  324 (579)
T PRK09192        245 LSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFA  324 (579)
T ss_pred             CeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHH
Confidence            99987752    27899999999999997776555555444322  0233467889999999999999999999999874

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=5.7e-35  Score=277.68  Aligned_cols=296  Identities=20%  Similarity=0.258  Sum_probs=233.6

Q ss_pred             hhhhhcc-cCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCC
Q 045351           31 TSYVFSL-LESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGV  109 (349)
Q Consensus        31 ~~~l~~~-~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~  109 (349)
                      .+.+..+ +  +.+ ||++|+++.  ++.+||.||.++++++|+.|.+ .|+++|++|+++++|+.+++++++||+++|+
T Consensus         7 ~~~~~~~~~--~~~-p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~   80 (508)
T TIGR02262         7 EDLLDRNVV--EGR-GGKTAFIDD--ISSLSYGELEAQVRRLGAALRR-LGVKREERVLLLMLDGVDFPIAFLGAIRAGI   80 (508)
T ss_pred             HHHHHHHHh--ccc-CCceEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence            3444554 5  668 999999986  7899999999999999999998 9999999999999999999999999999999


Q ss_pred             eEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----C-cceEEeCCCCc--cccccccCCCCCCCCcccccc
Q 045351          110 VVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----K-YGTVLLDSPEF--EPLSATDSLDYYDDDEERVRV  181 (349)
Q Consensus       110 ~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  181 (349)
                      +++|+++..+.+++.++++.++++++++++...+.+.+.     . ..++..+....  ..+......    ........
T Consensus        81 ~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (508)
T TIGR02262        81 VPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLAT----ESEQFKPA  156 (508)
T ss_pred             EEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhc----CCCccCCC
Confidence            999999999999999999999999999987655433221     1 11222222110  011000000    01111122


Q ss_pred             ccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhh-hhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEc
Q 045351          182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG-GHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCM  259 (349)
Q Consensus       182 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~  259 (349)
                      ...++++++++|||||||.||+|.++|+++...+.. ....++ +..+++++...|++|.+++ ..++.++..|+++++.
T Consensus       157 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~  235 (508)
T TIGR02262       157 ATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLG-IREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLM  235 (508)
T ss_pred             CCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcC-CCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEe
Confidence            455789999999999999999999999999987765 344445 6889999999999999999 5677889999999888


Q ss_pred             C-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccc
Q 045351          260 G-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLE  336 (349)
Q Consensus       260 ~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~  336 (349)
                      + .+++..+++.|+++++|.+.++|.++..+.... ........++|.+++||+++++++.+.|.+.++.  .+.|+.+|
T Consensus       236 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~-~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE  314 (508)
T TIGR02262       236 GERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADP-NLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTE  314 (508)
T ss_pred             CCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCc-cccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccc
Confidence            5 468999999999999999999999999888765 4444456789999999999999999999998843  23345566


Q ss_pred             cC
Q 045351          337 FG  338 (349)
Q Consensus       337 ~G  338 (349)
                      .|
T Consensus       315 ~~  316 (508)
T TIGR02262       315 ML  316 (508)
T ss_pred             cC
Confidence            55

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-35  Score=286.29  Aligned_cols=282  Identities=17%  Similarity=0.242  Sum_probs=219.5

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC-------CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA-------SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~-------~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      +++.+.|...+  ..+ |+++|+++.+       ..+.+||.||..++.++|+.|.+ .| .+||+|+++++|+++++++
T Consensus         1 ~s~~~~l~~~a--~~~-p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~-~g-~~gd~V~l~~~n~~~~~~~   75 (578)
T PRK05850          1 SSVPSLLRERA--SLQ-PDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRR-HG-STGDRAVILAPQGLEYIVA   75 (578)
T ss_pred             CcHHHHHHHHH--hcC-CCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHH-hC-CCCCEEEEEcCCcccHHHH
Confidence            46788999999  889 9999998642       13789999999999999999998 89 6899999999999999999


Q ss_pred             HHHHHhcCCeEecCCC---CCCHHHHHHHHhhcCCeEEEEcCccccccccc-------Cc-ceEEeCCCCccccccccCC
Q 045351          101 YLSLFSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-------KY-GTVLLDSPEFEPLSATDSL  169 (349)
Q Consensus       101 ~lA~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~  169 (349)
                      +|||+++|++++|+++   ..+.+++.++++.+++++++++++....+...       .. .++..+..+   ..     
T Consensus        76 ~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----  147 (578)
T PRK05850         76 FLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLD---LD-----  147 (578)
T ss_pred             HHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccc---cc-----
Confidence            9999999999999997   45788999999999999999988655444321       00 111111100   00     


Q ss_pred             CCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccc-c----CCCCCcEEEEecChhhHhhH-
Q 045351          170 DYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVR-A----ARSRPAVVLCTVPYFHSYGF-  243 (349)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~----~~~~~~~~l~~~p~~~~~g~-  243 (349)
                          ...........++++++|+|||||||.||||.++|++++..+......+ .    ....++++++.+|++|..|+ 
T Consensus       148 ----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~  223 (578)
T PRK05850        148 ----SPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLV  223 (578)
T ss_pred             ----cCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhH
Confidence                0000111234668999999999999999999999999988776554332 1    02457899999999999998 


Q ss_pred             HHHHhhhhcCCEEEEcCCC----CHHHHHHHHHhhcccEEEechHHHHHHHhc-C--CCCCCCCCcchheehccCCCCCH
Q 045351          244 TCCLRSLGMGESLVCMGKF----DFGRMLKAVEEFRVSHVVLAPPVVLKMARD-G--GTMDGYDLSSIEVVASGGAHLTL  316 (349)
Q Consensus       244 ~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~-~--~~~~~~~l~~lr~i~~gG~~l~~  316 (349)
                      ..++.+++.|+++++.+++    ++..+++.+++++++.+ .+|.++..+... .  ......+++++|.+++||+++++
T Consensus       224 ~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~  302 (578)
T PRK05850        224 LGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHP  302 (578)
T ss_pred             HHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCH
Confidence            6788999999999998642    78999999999999855 566654443322 1  02234567899999999999999


Q ss_pred             HHHHHHHHHcC
Q 045351          317 SVIRKYLQLNR  327 (349)
Q Consensus       317 ~~~~~~~~~~~  327 (349)
                      ++.++|.+.|+
T Consensus       303 ~~~~~~~~~~~  313 (578)
T PRK05850        303 ATLKRFADRFA  313 (578)
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.8e-35  Score=281.87  Aligned_cols=305  Identities=21%  Similarity=0.261  Sum_probs=235.3

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|...+  +.+ |+++|+++.  ++.+||.||.+++.++|..|.+ .|+++||+|+++++|+++++++++||+++
T Consensus        23 ~~i~~~l~~~a--~~~-p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~-~gi~~gd~V~i~~~n~~~~~~~~la~~~~   96 (557)
T PRK07059         23 PSLADLLEESF--RQY-ADRPAFICM--GKAITYGELDELSRALAAWLQS-RGLAKGARVAIMMPNVLQYPVAIAAVLRA   96 (557)
T ss_pred             CCHHHHHHHHH--HHc-CCCceEEEc--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            58999999999  889 999999987  7899999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----cCcceEEeCC-CCcc---cc------------cccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----LKYGTVLLDS-PEFE---PL------------SATD  167 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~-~~~~---~~------------~~~~  167 (349)
                      |++++|+++..+.+++.++++.++++++++++.....+..    .....+.+.. ....   ..            ....
T Consensus        97 G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (557)
T PRK07059         97 GYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAW  176 (557)
T ss_pred             CeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEeccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999998765433321    1111111100 0000   00            0000


Q ss_pred             --CCC------CC-CCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcc----ccC--CCCCcEEE
Q 045351          168 --SLD------YY-DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV----RAA--RSRPAVVL  232 (349)
Q Consensus       168 --~~~------~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~----~~~--~~~~~~~l  232 (349)
                        ...      .. ............++++++|+|||||||.||+|+++|++++.++......    +..  ......++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (557)
T PRK07059        177 SLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFV  256 (557)
T ss_pred             CCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEE
Confidence              000      00 0001111234567899999999999999999999999998765432211    110  01245788


Q ss_pred             EecChhhHhhH-HHHHhhhhcCCEEEEcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehcc
Q 045351          233 CTVPYFHSYGF-TCCLRSLGMGESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASG  310 (349)
Q Consensus       233 ~~~p~~~~~g~-~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~g  310 (349)
                      +.+|++|.+++ ...+.++..|++.++.+ ..++..+++.++++++|.+.++|.++..+.... ...+.+++++|.++.|
T Consensus       257 ~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-~~~~~~~~~l~~~~~g  335 (557)
T PRK07059        257 CALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNP-DFDKLDFSKLIVANGG  335 (557)
T ss_pred             EeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCc-CcCcCCchhheEEEec
Confidence            89999999987 56678889999877775 458999999999999999999999999999886 6666778899999999


Q ss_pred             CCCCCHHHHHHHHHHcC--CcccccccccCc
Q 045351          311 GAHLTLSVIRKYLQLNR--TVNRQLCLEFGA  339 (349)
Q Consensus       311 G~~l~~~~~~~~~~~~~--~~~~~~~~~~G~  339 (349)
                      |+++++.+.++|.+.++  ..+.|+.+|.|.
T Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  366 (557)
T PRK07059        336 GMAVQRPVAERWLEMTGCPITEGYGLSETSP  366 (557)
T ss_pred             cccCCHHHHHHHHHHhCCCeeeccccccccc
Confidence            99999999999998874  334456666553

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-35  Score=296.37  Aligned_cols=295  Identities=16%  Similarity=0.151  Sum_probs=227.3

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      ..|+.++|..++  +.+ ||++|+++.  ++.+||+||.++++++|+.|.+ .|+++||+|+|+++|+++++++++||++
T Consensus       446 ~~sl~~ll~~~a--~~~-pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~-~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~  519 (994)
T PRK07868        446 RISLGRIIAEQA--RDA-PKGEFLLFD--GRVHTYEAVNRRINNVVRGLIA-VGVRQGDRVGVLMETRPSALVAIAALSR  519 (994)
T ss_pred             CccHHHHHHHHH--HHC-CCCeEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence            478999999999  899 999999986  7899999999999999999998 9999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCcc--------ccccccCCCCCCCCcc-
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFE--------PLSATDSLDYYDDDEE-  177 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-  177 (349)
                      +|++++|++|.   +++.++++.++++++|++.+..+.+.....++++++.....        ......+.  ...... 
T Consensus       520 aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  594 (994)
T PRK07868        520 LGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDLDLPDDADVIDMEKI--DPDAVEL  594 (994)
T ss_pred             cCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccccCCcchhhhhhhhc--CcccccC
Confidence            99999999984   68999999999999999876655443333444444321100        00000000  000000 


Q ss_pred             ---ccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHH-hhhhcC
Q 045351          178 ---RVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCL-RSLGMG  253 (349)
Q Consensus       178 ---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~-~~l~~G  253 (349)
                         .......++++++|+|| ||||.||++.++|.+...........+. +.++|++++.+|++|.+|+...+ ..+..|
T Consensus       595 ~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~-l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG  672 (994)
T PRK07868        595 PGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAA-LDRRDTVYCLTPLHHESGLLVSLGGAVVGG  672 (994)
T ss_pred             CcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcC-CCCCCeEEEecChHHHhHHHHHHHHHhccc
Confidence               00112236899999998 6888888888888776655544445555 68899999999999999996554 455555


Q ss_pred             CEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC---cc
Q 045351          254 ESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT---VN  330 (349)
Q Consensus       254 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~  330 (349)
                      +++++.+++++..+++.|+++++|+++++|++++.|++.. .....++++||.++  |+.+++++++++.+.++.   .+
T Consensus       673 ~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~-~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~  749 (994)
T PRK07868        673 SRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDP-AFVLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVE  749 (994)
T ss_pred             eEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc-CCccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheee
Confidence            5666667899999999999999999999999999999875 55556678999876  335999999999999863   33


Q ss_pred             ccccccc
Q 045351          331 RQLCLEF  337 (349)
Q Consensus       331 ~~~~~~~  337 (349)
                      .|+.||.
T Consensus       750 ~YG~TE~  756 (994)
T PRK07868        750 FFATTDG  756 (994)
T ss_pred             eeecccc
Confidence            4455553

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=5.4e-35  Score=281.08  Aligned_cols=326  Identities=19%  Similarity=0.224  Sum_probs=242.1

Q ss_pred             ccccceeeccCCCCCCCCCCC-cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045351            7 FCSETKIFHSLRPSIAFPPET-TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYD   85 (349)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd   85 (349)
                      .++.++.+.+.--..+++..+ .++.+.|...+  ..+ |+++|+++.  ++.+||+||.+++.++|+.|..+.|+++||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~-~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~   77 (560)
T PRK08751          3 QARPWLQSYPAGVAAEIDLEQFRTVAEVFATSV--AKF-ADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGD   77 (560)
T ss_pred             cccchhhhcCCCCCCccCCcCCCcHHHHHHHHH--HhC-CCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            344555554443333444211 57899999999  889 999999986  789999999999999999996338999999


Q ss_pred             EEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----cCcc-eEEeCCCCc
Q 045351           86 VAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----LKYG-TVLLDSPEF  160 (349)
Q Consensus        86 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~-~~~~~~~~~  160 (349)
                      +|+++++|+++++++++||+++|++++|++|..+.+++.++++.++++++++++.....+.+    .... ++..+..+.
T Consensus        78 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (560)
T PRK08751         78 RVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDM  157 (560)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhh
Confidence            99999999999999999999999999999999999999999999999999998765433221    1111 111110000


Q ss_pred             --------------------cccccccCCCCC-----CCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHH
Q 045351          161 --------------------EPLSATDSLDYY-----DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAV  215 (349)
Q Consensus       161 --------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~  215 (349)
                                          ..+.......+.     ............++++++++|||||||.||+|.++|.++...+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~  237 (560)
T PRK08751        158 LGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANM  237 (560)
T ss_pred             cccccchhhhhhhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHH
Confidence                                000000000000     0000011123456899999999999999999999999998877


Q ss_pred             hhhhcccc---CCC-CCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEc-CCCCHHHHHHHHHhhcccEEEechHHHHHH
Q 045351          216 AGGHAVRA---ARS-RPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKM  289 (349)
Q Consensus       216 ~~~~~~~~---~~~-~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l  289 (349)
                      ......+.   .+. .++++++..|++|.+++ ...+.++..|++.++. ..+++..+++.++++++|++.++|.++..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l  317 (560)
T PRK08751        238 QQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGL  317 (560)
T ss_pred             HHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHH
Confidence            65443332   012 34677889999999998 4556777788887666 467899999999999999999999999999


Q ss_pred             HhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccccC
Q 045351          290 ARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFG  338 (349)
Q Consensus       290 ~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G  338 (349)
                      .+.. ...+.+++++|.+++||+++++++.+.+.+.++.  .+.|+.+|.|
T Consensus       318 ~~~~-~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  367 (560)
T PRK08751        318 LNTP-GFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETS  367 (560)
T ss_pred             HcCc-CcCCcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCC
Confidence            9876 5666778899999999999999999999988742  3344556654

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=3.6e-35  Score=271.21  Aligned_cols=309  Identities=18%  Similarity=0.199  Sum_probs=239.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC------CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA------SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLY  101 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~------~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~  101 (349)
                      .|+++.+...+  ..+ ++.+++-...      .-+++||+|.++++.+++..|+. +|+++++.|+|+..|++||++..
T Consensus        75 ~T~~~~f~~~~--~~~-~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~-lG~~~~~~VGIy~~N~pEWiis~  150 (691)
T KOG1256|consen   75 LTLYEGFRRSV--EKS-GNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRK-LGVKEDSKVGIYAFNRPEWIISE  150 (691)
T ss_pred             ccHHHHhhcch--hcc-CCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCceEEEeccCChhhHHhH
Confidence            89999999999  999 9999996542      23899999999999999999997 99999999999999999999999


Q ss_pred             HHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcC-cccccccc------c-Ccc-eEEeCCCC-------------
Q 045351          102 LSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATH-DTAHKIPQ------L-KYG-TVLLDSPE-------------  159 (349)
Q Consensus       102 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~-~~~~~~~~------~-~~~-~~~~~~~~-------------  159 (349)
                      +||...|.+.+|+...++++++.+++..++..++|+|+ +....+.+      . ..+ ++.++...             
T Consensus       151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~  230 (691)
T KOG1256|consen  151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVE  230 (691)
T ss_pred             HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeE
Confidence            99999999999999999999999999999999999994 33333222      0 122 44444321             


Q ss_pred             ---ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhh---hccccC--CCCCcEE
Q 045351          160 ---FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGG---HAVRAA--RSRPAVV  231 (349)
Q Consensus       160 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~---~~~~~~--~~~~~~~  231 (349)
                         |+++.+-+..    ...... .+..|+|.|.|+|||||||.||||++||+|+++.+...   ......  ...+|++
T Consensus       231 v~S~~e~~~lG~~----~~~~~~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~  305 (691)
T KOG1256|consen  231 VYSWDEFEELGKK----NQRKPR-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVY  305 (691)
T ss_pred             EEEHHHHHhhccc----ccCCCC-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceE
Confidence               2222222211    112222 57899999999999999999999999999999966531   111110  2336999


Q ss_pred             EEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcC------------------
Q 045351          232 LCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG------------------  293 (349)
Q Consensus       232 l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~------------------  293 (349)
                      ++++|+.|++....-...++.|+.+.+..+ |+..+.+.|++.++|.+.++|-+|+++.+.-                  
T Consensus       306 lSyLPLAHi~er~~~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A  384 (691)
T KOG1256|consen  306 LSYLPLAHIFERVVELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFA  384 (691)
T ss_pred             EEeCcHHHHHHHHHHHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            999999999999777777799999999975 9999999999999999999999997765321                  


Q ss_pred             -----------CCCC-CCCC--------------cchheehccCCCCCHHHHHHHHHHcCCccc--ccccccCceeeecC
Q 045351          294 -----------GTMD-GYDL--------------SSIEVVASGGAHLTLSVIRKYLQLNRTVNR--QLCLEFGAPIISLS  345 (349)
Q Consensus       294 -----------~~~~-~~~l--------------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~--~~~~~~G~~~i~~~  345 (349)
                                 +... ...+              .++|.+++|++|+++++.+.++..+++...  |+.||+-++.+...
T Consensus       385 ~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~  464 (691)
T KOG1256|consen  385 MAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTL  464 (691)
T ss_pred             HHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEecc
Confidence                       0000 0000              478999999999999999999999865433  34466654444444


Q ss_pred             C
Q 045351          346 K  346 (349)
Q Consensus       346 ~  346 (349)
                      +
T Consensus       465 ~  465 (691)
T KOG1256|consen  465 P  465 (691)
T ss_pred             C
Confidence            3

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-34  Score=273.23  Aligned_cols=266  Identities=20%  Similarity=0.180  Sum_probs=220.0

Q ss_pred             CCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCH
Q 045351           41 HAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI  120 (349)
Q Consensus        41 ~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~  120 (349)
                      +.. ++++|++++  ++++||+||.++++++|..|+.      +|+|+++++|+++++++++||+++|++++|+++..+.
T Consensus        11 ~~~-~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~------~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~   81 (471)
T PRK07787         11 AAA-DIADAVRIG--GRVLSRSDLAGAATAVAERVAG------ARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGV   81 (471)
T ss_pred             ccc-CCceEEEeC--CcEEEHHHHHHHHHHHHHHhcc------CCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCh
Confidence            455 899999997  8999999999999999999873      5899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCC
Q 045351          121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGM  200 (349)
Q Consensus       121 ~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~  200 (349)
                      +++.++++++++++++++....  ...  ......... .    ..          ........++++++++|||||||.
T Consensus        82 ~~l~~~l~~~~~~~il~~~~~~--~~~--~~~~~~~~~-~----~~----------~~~~~~~~~~~~a~i~~TSGTTG~  142 (471)
T PRK07787         82 AERRHILADSGAQAWLGPAPDD--PAG--LPHVPVRLH-A----RS----------WHRYPEPDPDAPALIVYTSGTTGP  142 (471)
T ss_pred             HHHHHHHHhcCCCEEEecCCcc--ccc--ccceeeecc-c----cc----------cccCCCCCCCceEEEEECCCCCCC
Confidence            9999999999999999976311  001  111000000 0    00          000112456899999999999999


Q ss_pred             CceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEE
Q 045351          201 VKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHV  279 (349)
Q Consensus       201 pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l  279 (349)
                      ||+|.++|+++...+......++ +..++++++.+|++|.+|+ ..++.+++.|+++++.+.+++..+++.++ +++|++
T Consensus       143 PK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~  220 (471)
T PRK07787        143 PKGVVLSRRAIAADLDALAEAWQ-WTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLY  220 (471)
T ss_pred             CCEEEEeHHHHHHHHHHHHHhcC-CCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEE
Confidence            99999999999999888777777 6889999999999999998 67889999999999999899999999999 999999


Q ss_pred             EechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccccC
Q 045351          280 VLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFG  338 (349)
Q Consensus       280 ~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G  338 (349)
                      .++|.++..|.+..  .....++++|.+++||+++++++++++.+.++.  .+.|+.+|.|
T Consensus       221 ~~~P~~~~~l~~~~--~~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  279 (471)
T PRK07787        221 FGVPTVWSRIAADP--EAARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETL  279 (471)
T ss_pred             EcchHHHHHHHhCc--cccccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccC
Confidence            99999999998763  233467899999999999999999999988743  2334455544

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-35  Score=276.33  Aligned_cols=292  Identities=21%  Similarity=0.230  Sum_probs=220.7

Q ss_pred             cccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCC
Q 045351           36 SLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCN  115 (349)
Q Consensus        36 ~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~  115 (349)
                      ..+  ..+ |+++|+++.++++.+||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++|++
T Consensus         5 ~~a--~~~-p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~-~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~   80 (501)
T PRK13390          5 THA--QIA-PDRPAVIVAETGEQVSYRQLDDDSAALARVLYD-AGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAIN   80 (501)
T ss_pred             hhh--hhC-CCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccc
Confidence            345  667 999999986567899999999999999999998 9999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHhhcCCeEEEEcCcccccccccC--cce-EEeCCCCccccccccCCCCCCCCccccccccCCCCcEEEE
Q 045351          116 PSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK--YGT-VLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAIL  192 (349)
Q Consensus       116 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  192 (349)
                      +..+.+++.++++.++++++++++..........  ... +.+.. ...... ..+.    ............++.++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~----~~~~~~~~~~~~~~~a~i~  154 (501)
T PRK13390         81 HHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGG-EIDGFG-SFEA----ALAGAGPRLTEQPCGAVML  154 (501)
T ss_pred             cCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecC-cccccc-cHHH----HhcccCCCCCCCcccEEEE
Confidence            9999999999999999999999765432221111  111 11111 000000 0000    0000000111223579999


Q ss_pred             eccCCCCCCceeee--chhhHHHHHh----hhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHH
Q 045351          193 YSSGTTGMVKGALL--TQRNLVAAVA----GGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGR  266 (349)
Q Consensus       193 ~TSGtTG~pK~v~~--t~~~l~~~~~----~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~  266 (349)
                      |||||||.||||++  +|+++.....    .....+. +..+++++...|++|.+++...+..+..|+++++.+.+++..
T Consensus       155 ~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~  233 (501)
T PRK13390        155 YSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYD-ISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQA  233 (501)
T ss_pred             eCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhC-CCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCCcCHHH
Confidence            99999999999995  5565544221    1122344 678899999999999999855556678899999999899999


Q ss_pred             HHHHHHhhcccEEEechHHHHHHHhcCC-CCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccccC
Q 045351          267 MLKAVEEFRVSHVVLAPPVVLKMARDGG-TMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFG  338 (349)
Q Consensus       267 ~~~~i~~~~~t~l~~~P~~l~~l~~~~~-~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G  338 (349)
                      +++.|+++++|++.++|.++..|.+... .....+++++|.+++||+++++++.+.+.+.++.  .+.|+.+|.|
T Consensus       234 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  308 (501)
T PRK13390        234 TLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAH  308 (501)
T ss_pred             HHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccC
Confidence            9999999999999999999999987530 1244567899999999999999999999988752  2334556654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=6.1e-35  Score=301.73  Aligned_cols=303  Identities=18%  Similarity=0.164  Sum_probs=236.9

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.+.+.+  +++++++.|+.+. +++++||+||+++++++|+.|++  |+++||+|+++++|+++++++++||+++
T Consensus       631 ~~~~~~l~~~~--~~~~~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~--g~~~gd~V~i~~~n~~~~~~~~la~~~~  705 (1140)
T PRK06814        631 RTLFEALIEAA--KIHGFKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK--NTPPGENVGVMLPNANGAAVTFFALQSA  705 (1140)
T ss_pred             CCHHHHHHHHH--HHcCCCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHHHC
Confidence            56778888888  7772466777663 36899999999999999999964  9999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccc------cc--CcceEEeCCCCc-cccccccCCCCCCCCccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIP------QL--KYGTVLLDSPEF-EPLSATDSLDYYDDDEER  178 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~------~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  178 (349)
                      |++++|+++..+.+++.++++++++++++++++..+...      +.  ...++.++.... .......+..........
T Consensus       706 G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (1140)
T PRK06814        706 GRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLV  785 (1140)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCCcc
Confidence            999999999999999999999999999999875443211      11  122333332100 000000000000000000


Q ss_pred             cccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEE
Q 045351          179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLV  257 (349)
Q Consensus       179 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v  257 (349)
                      ......++++++++|||||||.||||.+||+++...+......++ +.++|++++.+|++|.+|+ ..++.++..|++++
T Consensus       786 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~  864 (1140)
T PRK06814        786 YFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARID-FSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVF  864 (1140)
T ss_pred             ccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhC-CCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEE
Confidence            111356799999999999999999999999999998888777777 7899999999999999999 77889999999999


Q ss_pred             EcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccc
Q 045351          258 CMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLC  334 (349)
Q Consensus       258 ~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~  334 (349)
                      +.+ .++...+.+.++++++|++..+|++++.+.+..   ...+++++|.+++||+++++++.+++.+.++.  .+.|+.
T Consensus       865 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~---~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~  941 (1140)
T PRK06814        865 LYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA---HPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGV  941 (1140)
T ss_pred             EecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc---ccccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEecccc
Confidence            886 457788899999999999999999999987753   34567899999999999999999999998842  344566


Q ss_pred             cccCc
Q 045351          335 LEFGA  339 (349)
Q Consensus       335 ~~~G~  339 (349)
                      ||.|.
T Consensus       942 TE~~~  946 (1140)
T PRK06814        942 TETAP  946 (1140)
T ss_pred             ccccc
Confidence            66654

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-34  Score=266.80  Aligned_cols=247  Identities=17%  Similarity=0.141  Sum_probs=213.1

Q ss_pred             EEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhh
Q 045351           50 LIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHL  129 (349)
Q Consensus        50 i~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~  129 (349)
                      ++++  ++.+||.||.++++++|+.|.  .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..++++
T Consensus         2 ~~~~--~~~~ty~el~~~~~~~a~~l~--~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~   77 (414)
T PRK08308          2 LIVN--DEEYSKSDFDLRLQRYEEMEQ--FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKR   77 (414)
T ss_pred             eEec--CceecHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHh
Confidence            5565  789999999999999999985  589999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechh
Q 045351          130 SKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQR  209 (349)
Q Consensus       130 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~  209 (349)
                      ++++++++++....           .         ..             .....++++++++|||||||.||+|.+||+
T Consensus        78 ~~~~~~i~~~~~~~-----------~---------~~-------------~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~  124 (414)
T PRK08308         78 AGCHGLLYGESDFT-----------K---------LE-------------AVNYLAEEPSLLQYSSGTTGEPKLIRRSWT  124 (414)
T ss_pred             CCCCEEEecCcccc-----------c---------cc-------------CCCCCCCCceEEEECCCCCCCCcEEEEehH
Confidence            99999998752100           0         00             002346789999999999999999999999


Q ss_pred             hHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHH
Q 045351          210 NLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLK  288 (349)
Q Consensus       210 ~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~  288 (349)
                      ++...+..+...+. ...+++++...|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|+++++|.++..
T Consensus       125 ~l~~~~~~~~~~~~-~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~  203 (414)
T PRK08308        125 EIDREIEAYNEALN-CEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHI  203 (414)
T ss_pred             hHHHHHHHHHHhhC-CCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHH
Confidence            99998888777777 6788999999999999998 678899999999999998999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc-CCcccccccccCc
Q 045351          289 MARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLCLEFGA  339 (349)
Q Consensus       289 l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~~~~G~  339 (349)
                      |.+.. ..    ..+++.+++||+++++++.+++.+.. +..+.|+.+|.|+
T Consensus       204 l~~~~-~~----~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~  250 (414)
T PRK08308        204 LGRLL-PG----TFQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGC  250 (414)
T ss_pred             HHhcC-Cc----cccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCC
Confidence            98764 22    13688899999999999999998875 2334466677654

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-34  Score=269.72  Aligned_cols=274  Identities=21%  Similarity=0.235  Sum_probs=222.0

Q ss_pred             chhhhhh-cccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           29 SVTSYVF-SLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        29 tl~~~l~-~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      ++.+++. ..+  +.+ |+++|+++.  ++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus         3 ~~~~~~~~~~a--~~~-~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~v~l~~~~~~~~~~~~la~~~~   76 (458)
T PRK09029          3 IFSDWPWRHWA--QVR-PQAIALRLN--DEVLTWQQLCARIDQLAAGFAQ-QGVVEGSGVALRGKNSPETLLAYLALLQC   76 (458)
T ss_pred             hhhcChHHHHH--HhC-CCceeeecC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence            4555553 346  778 999999976  8899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |++++|+++..+.+++..+++++++++++++++... +...       ......    .        ..........+++
T Consensus        77 G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-------~~~~~~----~--------~~~~~~~~~~~~~  136 (458)
T PRK09029         77 GARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSAL-------TSLHLQ----L--------VEGAHAVAWQPQR  136 (458)
T ss_pred             CCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhc-------cccccc----c--------ccccCcccCCCCC
Confidence            999999999999999999999999999998775432 1110       000000    0        0001122456789


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHH
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRM  267 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~  267 (349)
                      +++++|||||||.||||.+||++++..+......++ +..+++++...|++|.+|+..++.+|..|+++++.+.   ..+
T Consensus       137 ~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~-~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~---~~~  212 (458)
T PRK09029        137 LATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMP-FTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK---QPL  212 (458)
T ss_pred             eEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCC-CCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh---HHH
Confidence            999999999999999999999999999888877777 6889999999999999999877889999999999864   456


Q ss_pred             HHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc-CCcccccccccCc
Q 045351          268 LKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLCLEFGA  339 (349)
Q Consensus       268 ~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~~~~G~  339 (349)
                      ++.+  .++|.+..+|.++..|.... ..    ..++|.+++||+++++.+.+++.+.. +..+.|+.+|.|.
T Consensus       213 ~~~i--~~~t~~~~~P~~~~~l~~~~-~~----~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~  278 (458)
T PRK09029        213 EQAL--AGCTHASLVPTQLWRLLDNR-SE----PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMAS  278 (458)
T ss_pred             HHHH--hhceeeecChHHHHHHHhcc-cc----CCcceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCc
Confidence            6666  37899999999999998764 32    34799999999999999999887641 2223345566553

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.3e-34  Score=265.99  Aligned_cols=268  Identities=20%  Similarity=0.215  Sum_probs=222.0

Q ss_pred             eHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 045351           60 LYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATH  139 (349)
Q Consensus        60 Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~  139 (349)
                      ||+||.+.+.++|+.|.++.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            79999999999999999657999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhh
Q 045351          140 DTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH  219 (349)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~  219 (349)
                      .....+..........+..........       ............+++++++|||||||.||+|.+||+++...+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~  153 (408)
T TIGR01733        81 ALASRLAGLVLPIILVDPLELAALDDA-------PAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLA  153 (408)
T ss_pred             chhhhccccCCceEEechhhhhhcccc-------cccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHH
Confidence            766655443323333321111110000       0001111124578999999999999999999999999999998888


Q ss_pred             ccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCC---HHHHHHHHHhhcccEEEechHHHHHHHhcCCCC
Q 045351          220 AVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFD---FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM  296 (349)
Q Consensus       220 ~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  296 (349)
                      ..+. +..++++++..|++|.+++..++.++..|+++++.+..+   +..+.+.++++++|.+.++|.+++.|.+.. . 
T Consensus       154 ~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~-~-  230 (408)
T TIGR01733       154 RRYG-LDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAAL-P-  230 (408)
T ss_pred             HhcC-CCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhh-h-
Confidence            8777 688999999999999999999999999999999997543   689999999999999999999999999875 3 


Q ss_pred             CCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccCc
Q 045351          297 DGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       297 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                        .++++||.+++||+++++++++++.+.++..   ..|+.+|.|.
T Consensus       231 --~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~  274 (408)
T TIGR01733       231 --PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTV  274 (408)
T ss_pred             --hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEE
Confidence              5688999999999999999999999998732   2344566553

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-34  Score=272.30  Aligned_cols=294  Identities=21%  Similarity=0.219  Sum_probs=226.1

Q ss_pred             cccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCC
Q 045351           36 SLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCN  115 (349)
Q Consensus        36 ~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~  115 (349)
                      ..+  +.+ |+++|+++..+++.+||.||.+++.++|+.|.+ .|+++|++|+++++|+.+++++++||+++|+++++++
T Consensus         5 ~~a--~~~-p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~-~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~   80 (511)
T PRK13391          5 IHA--QTT-PDKPAVIMASTGEVVTYRELDERSNRLAHLFRS-LGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVN   80 (511)
T ss_pred             hhH--hhC-CCceEEEecCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccc
Confidence            455  678 999999986558899999999999999999998 9999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----Cc-ceEEeCCC-CccccccccCCCCCCCCccccccccCCCCc
Q 045351          116 PSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KY-GTVLLDSP-EFEPLSATDSLDYYDDDEERVRVSVSLSDP  188 (349)
Q Consensus       116 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (349)
                      +..+.+++.++++.+++++++++..........     .. ..+..+.. ........ .+..  .. .........++.
T Consensus        81 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~-~~~~~~~~~~~~  156 (511)
T PRK13391         81 SHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGY-AEAV--AG-LPATPIADESLG  156 (511)
T ss_pred             cccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccH-HHHh--cC-CCCCCCCCcccc
Confidence            999999999999999999999987654433211     11 12222211 11000000 0000  00 000111233467


Q ss_pred             EEEEeccCCCCCCceeee--chhhHHHH---HhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCC
Q 045351          189 AAILYSSGTTGMVKGALL--TQRNLVAA---VAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFD  263 (349)
Q Consensus       189 ~~i~~TSGtTG~pK~v~~--t~~~l~~~---~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~  263 (349)
                      ++++|||||||.||||.+  +|.++...   .......+. +.+++++++..|++|.+++...+.++..|+++++.+.++
T Consensus       157 a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~  235 (511)
T PRK13391        157 TDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWG-FRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFD  235 (511)
T ss_pred             cEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcC-CCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCCCC
Confidence            899999999999999995  46665432   223344455 578899999999999999988888999999999999899


Q ss_pred             HHHHHHHHHhhcccEEEechHHHHHHHhcCC-CCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc--ccccccccC
Q 045351          264 FGRMLKAVEEFRVSHVVLAPPVVLKMARDGG-TMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV--NRQLCLEFG  338 (349)
Q Consensus       264 ~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~-~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~--~~~~~~~~G  338 (349)
                      +..+++.++++++|++.++|.++..+.+... .....+++++|.+++||+++++++.+++.+.++..  ..|+.+|.|
T Consensus       236 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~  313 (511)
T PRK13391        236 AEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGL  313 (511)
T ss_pred             HHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeecccccc
Confidence            9999999999999999999999999887540 23345688999999999999999999999988532  224455654

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.2e-34  Score=272.50  Aligned_cols=305  Identities=20%  Similarity=0.308  Sum_probs=234.3

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.|...+  +.+ |+++|+++.  ++.+||+||.++++++|..|.++.|+++|++|+++++|+.++++++|||+++
T Consensus        23 ~~l~~~l~~~a--~~~-p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~   97 (560)
T PRK08974         23 QSLVDMFEQAV--ARY-ADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRA   97 (560)
T ss_pred             ccHHHHHHHHH--HhC-CCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            57999999999  889 999999986  7899999999999999999983379999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----cCcceEEeC-CC-Cccc----cc-------ccc-CC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----LKYGTVLLD-SP-EFEP----LS-------ATD-SL  169 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~-~~-~~~~----~~-------~~~-~~  169 (349)
                      |++++|+++..+.+++.++++.+++++++++++..+.+..    .....+... .. ....    ..       ... ..
T Consensus        98 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (560)
T PRK08974         98 GMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPK  177 (560)
T ss_pred             CcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhccccccc
Confidence            9999999999999999999999999999997754433221    111111110 00 0000    00       000 00


Q ss_pred             -CCCC-----------CCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc--CCCCCcEEEEec
Q 045351          170 -DYYD-----------DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA--ARSRPAVVLCTV  235 (349)
Q Consensus       170 -~~~~-----------~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~l~~~  235 (349)
                       ....           ...........++++++++|||||||.||+|.++|+++..++......+.  ....++.++..+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (560)
T PRK08974        178 YHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTAL  257 (560)
T ss_pred             ccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeC
Confidence             0000           00001112245789999999999999999999999999887654333221  024567889999


Q ss_pred             ChhhHhhH-HHHHhhhhcCCEEEEc-CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCC
Q 045351          236 PYFHSYGF-TCCLRSLGMGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAH  313 (349)
Q Consensus       236 p~~~~~g~-~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~  313 (349)
                      |++|.+++ ...+..+..|+++++. +..++..+++.++++++|.+.++|.+++.|.... .....+++++|.+++||++
T Consensus       258 p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~~~lr~~~~gg~~  336 (560)
T PRK08974        258 PLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNE-EFQELDFSSLKLSVGGGMA  336 (560)
T ss_pred             cHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCc-CcccCCccceeEEEecCcc
Confidence            99999998 5677788999997776 4568899999999999999999999999998876 5556678899999999999


Q ss_pred             CCHHHHHHHHHHcC--CcccccccccC
Q 045351          314 LTLSVIRKYLQLNR--TVNRQLCLEFG  338 (349)
Q Consensus       314 l~~~~~~~~~~~~~--~~~~~~~~~~G  338 (349)
                      +++.+.++|.+.++  ..+.|+.+|.|
T Consensus       337 ~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        337 VQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             CCHHHHHHHHHHhCCcEEeeecccccC
Confidence            99999999998774  23445566654

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-33  Score=268.57  Aligned_cols=284  Identities=24%  Similarity=0.245  Sum_probs=219.4

Q ss_pred             EEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHh
Q 045351           49 ALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIH  128 (349)
Q Consensus        49 ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~  128 (349)
                      |++....++.+||.||.+.+.++|+.|.+ .|+++||+|+++++|+.++++++|||+++|++++|+++..+.+++.++++
T Consensus         2 ~~~~~~~~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~   80 (502)
T PRK08276          2 AVIMAPSGEVVTYGELEARSNRLAHGLRA-LGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVD   80 (502)
T ss_pred             ceEecCCCcEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHh
Confidence            44444458999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEEcCccccccccc------CcceEEeCCCCccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCc
Q 045351          129 LSKPVIAFATHDTAHKIPQL------KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVK  202 (349)
Q Consensus       129 ~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK  202 (349)
                      .++++++++++.....+.+.      ....+.+........... +.... ..  ........++.++++|||||||.||
T Consensus        81 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~--~~~~~~~~~~~a~i~~TSGtTG~PK  156 (502)
T PRK08276         81 DSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSY-EEALA-AQ--PDTPIADETAGADMLYSSGTTGRPK  156 (502)
T ss_pred             cCCCCEEEEccchhhHHHHHhhhccccccEEEEeCCCCCccccH-HHHHh-cC--CCCCCCCCCcceEEEECCCCCCCCc
Confidence            99999999987655443221      122222221111000000 00000 00  0111234567899999999999999


Q ss_pred             eeeechhhHHHHH------hhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcc
Q 045351          203 GALLTQRNLVAAV------AGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRV  276 (349)
Q Consensus       203 ~v~~t~~~l~~~~------~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~  276 (349)
                      +|.++|.++....      ........ ...++++++..|++|.+++...+.++..|+++++.+.+++..+++.++++++
T Consensus       157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~  235 (502)
T PRK08276        157 GIKRPLPGLDPDEAPGMMLALLGFGMY-GGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYRV  235 (502)
T ss_pred             eEEEccCCcchhhhhHHhhhhhhhccc-CCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhCC
Confidence            9999988765432      11222222 2467899999999999999777789999999999999999999999999999


Q ss_pred             cEEEechHHHHHHHhcCCC--CCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccccCc
Q 045351          277 SHVVLAPPVVLKMARDGGT--MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFGA  339 (349)
Q Consensus       277 t~l~~~P~~l~~l~~~~~~--~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G~  339 (349)
                      |++.++|.++..+.+.+ .  ...++++++|.+++||++++.++++++.+.++.  .+.|+.+|.|.
T Consensus       236 t~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  301 (502)
T PRK08276        236 THSQLVPTMFVRMLKLP-EEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGG  301 (502)
T ss_pred             eEEEehHHHHHHHHhCc-cccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccc
Confidence            99999999999998875 3  345678999999999999999999999998753  23355667654

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-33  Score=271.23  Aligned_cols=293  Identities=17%  Similarity=0.158  Sum_probs=229.4

Q ss_pred             chhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcC
Q 045351           29 SVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLG  108 (349)
Q Consensus        29 tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G  108 (349)
                      ++.+.+...+  ... |+.+++.+.+.++.+||.||+++++++|++|.+ .|+++||+|+++++|+++++++++||+++|
T Consensus         3 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~-~g~~~gd~V~l~~~~~~~~~~~~la~~~~g   78 (545)
T PRK07768          3 RFTEKMYANA--RTS-PRGMVTGEPDAPVRHTWGEVHERARRIAGGLAA-AGVGPGDAVAVLAGAPVEIAPTAQGLWMRG   78 (545)
T ss_pred             hHHHHHHHHh--hCC-CcceEEecCCCceEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHHcC
Confidence            5788888999  888 999999888777899999999999999999998 999999999999999999999999999999


Q ss_pred             CeEecCCCCCCHHHH-------HHHHhhcCCeEEEEcCccccccccc---CcceEEeCCCCccccccccCCCCCCCCccc
Q 045351          109 VVVSPCNPSCTIPEI-------LRQIHLSKPVIAFATHDTAHKIPQL---KYGTVLLDSPEFEPLSATDSLDYYDDDEER  178 (349)
Q Consensus       109 ~~~v~i~~~~~~~~l-------~~~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (349)
                      ++++++++..+.+++       .++++.++++.+++++.....+...   ...++.     +.++...       ...  
T Consensus        79 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~-------~~~--  144 (545)
T PRK07768         79 ASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLT-----VADLLAA-------DPI--  144 (545)
T ss_pred             ccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCceee-----hhhhccc-------CCC--
Confidence            999999988776544       4567778999999987554332221   111111     1122111       010  


Q ss_pred             cccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCC-cEEEEecChhhHhhH-HHHHhhhhcCCEE
Q 045351          179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRP-AVVLCTVPYFHSYGF-TCCLRSLGMGESL  256 (349)
Q Consensus       179 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~-~~~l~~~p~~~~~g~-~~~~~~l~~G~~~  256 (349)
                      ......++++++++|||||||.||+|+++|+++...+......++ +..+ +++++.+|++|..|+ ..++.++..|+++
T Consensus       145 ~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~  223 (545)
T PRK07768        145 DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAE-FDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAEL  223 (545)
T ss_pred             CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcC-CCCCCceeEEeCCCccchHHHHHHHHHHHCCceE
Confidence            112446789999999999999999999999999998887777666 5655 899999999999999 4566789999999


Q ss_pred             EEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcC---CCCCCCCCcchheehccCCCCCHHHHHHHHHH---c
Q 045351          257 VCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG---GTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL---N  326 (349)
Q Consensus       257 v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~---~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~---~  326 (349)
                      ++...    .++..+++.+++++++.+..+|..+..+....   ......+++++|.+++||+++++++.+++.+.   +
T Consensus       224 v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~  303 (545)
T PRK07768        224 VKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARF  303 (545)
T ss_pred             EEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhc
Confidence            98853    27888999999999999887777766655421   02234678899999999999999999999874   3


Q ss_pred             C-----CcccccccccCce
Q 045351          327 R-----TVNRQLCLEFGAP  340 (349)
Q Consensus       327 ~-----~~~~~~~~~~G~~  340 (349)
                      +     ....|+.+|.|..
T Consensus       304 g~~~~~~~~~yG~tE~~~~  322 (545)
T PRK07768        304 GLRPEAILPAYGMAEATLA  322 (545)
T ss_pred             CCCcccccccccccccceE
Confidence            2     2334556666543

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=4.2e-34  Score=267.07  Aligned_cols=250  Identities=16%  Similarity=0.141  Sum_probs=199.7

Q ss_pred             eeeHHHHHHHHHHHHHHHhhhcCC-CCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEE
Q 045351           58 RILYPDLTLRIKTLAYSLKTKYKL-SKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAF  136 (349)
Q Consensus        58 ~~Ty~~l~~~~~~~a~~L~~~~g~-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~  136 (349)
                      -+.|+||.++++++|+.|.+ .|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~-~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i   97 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQ-LATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW   97 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHH-hcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence            36899999999999999999 988 5799999999999999999999999999999999999999999999999999999


Q ss_pred             EcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHh
Q 045351          137 ATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVA  216 (349)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~  216 (349)
                      ++++.....         ..         ..      ..   ......+++.++++|||||||.||||++||+++...+.
T Consensus        98 ~~~~~~~~~---------~~---------~~------~~---~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~  150 (452)
T PRK07445         98 GLDQLKLSH---------PP---------PL------PS---QGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQ  150 (452)
T ss_pred             ecCcccccc---------CC---------CC------Cc---cccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHH
Confidence            876532110         00         00      00   01123568999999999999999999999999998887


Q ss_pred             hhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCC
Q 045351          217 GGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM  296 (349)
Q Consensus       217 ~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~  296 (349)
                      .....+. +.+ +++++.+|++|.+|+..++.+++.|+++++.+..+.........+++++++.++|.+++.+.+..   
T Consensus       151 ~~~~~~~-~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---  225 (452)
T PRK07445        151 GFQRYFQ-LQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---  225 (452)
T ss_pred             HHHHHhc-CCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---
Confidence            7766665 443 46788999999999988889999999999986432232233445788999999999999998642   


Q ss_pred             CCCCCcchheehccCCCCCHHHHHHHHHH-cCCcccccccccCcee
Q 045351          297 DGYDLSSIEVVASGGAHLTLSVIRKYLQL-NRTVNRQLCLEFGAPI  341 (349)
Q Consensus       297 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~-~~~~~~~~~~~~G~~~  341 (349)
                       ...+++||.+++||+++++++.+++.+. .+..+.|+.||.|..+
T Consensus       226 -~~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~  270 (452)
T PRK07445        226 -PQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQI  270 (452)
T ss_pred             -hhhhhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccc
Confidence             2347899999999999999999887653 1233445667765433

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.8e-33  Score=264.58  Aligned_cols=288  Identities=22%  Similarity=0.240  Sum_probs=220.2

Q ss_pred             eEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHH
Q 045351           48 TALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQI  127 (349)
Q Consensus        48 ~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l  127 (349)
                      .|++++  ++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++++++..+.+++.+++
T Consensus         3 ~~~~~~--~~~~Ty~el~~~~~~la~~l~~-~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l   79 (509)
T PRK12406          3 ATIISG--DRRRSFDELAQRAARAAGGLAA-LGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYIL   79 (509)
T ss_pred             eEEEEC--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHH
Confidence            456665  7899999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCeEEEEcCcccccccc-c--CcceEEeCCC-Cccccc---cc----cCC--CCCC-CCccccccccCCCCcEEEEe
Q 045351          128 HLSKPVIAFATHDTAHKIPQ-L--KYGTVLLDSP-EFEPLS---AT----DSL--DYYD-DDEERVRVSVSLSDPAAILY  193 (349)
Q Consensus       128 ~~~~~~~i~~~~~~~~~~~~-~--~~~~~~~~~~-~~~~~~---~~----~~~--~~~~-~~~~~~~~~~~~~~~~~i~~  193 (349)
                      +.+++++++++....+.+.+ .  ...++..... +.....   ..    ...  .+.+ ............+++++++|
T Consensus        80 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~  159 (509)
T PRK12406         80 EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIY  159 (509)
T ss_pred             hccCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCccCCCCCCCceEEEE
Confidence            99999999998765544322 1  1112211110 000000   00    000  0000 00000112335689999999


Q ss_pred             ccCCCCCCceeeechhhH---HHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHH
Q 045351          194 SSGTTGMVKGALLTQRNL---VAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKA  270 (349)
Q Consensus       194 TSGtTG~pK~v~~t~~~l---~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~  270 (349)
                      ||||||.||+|.++|...   ..........++ +..++++++..|++|..+....+.++..|+++++.+.+++..+++.
T Consensus       160 TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  238 (509)
T PRK12406        160 TSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYG-LKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQL  238 (509)
T ss_pred             CCCCCCCCceEEEechhHHHHHHHHHhhhhhcC-CCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHH
Confidence            999999999999876654   333333444555 6888999999999999988767778999999999988999999999


Q ss_pred             HHhhcccEEEechHHHHHHHhcC-CCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccccCc
Q 045351          271 VEEFRVSHVVLAPPVVLKMARDG-GTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFGA  339 (349)
Q Consensus       271 i~~~~~t~l~~~P~~l~~l~~~~-~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G~  339 (349)
                      ++++++|.+.++|.++..|+... +.....+++++|.+++||+++++++++++.+.++.  .+.|+.+|.|.
T Consensus       239 l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  310 (509)
T PRK12406        239 IERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGA  310 (509)
T ss_pred             HHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCc
Confidence            99999999999999999998764 02345678999999999999999999999998753  23345566554

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3e-33  Score=260.85  Aligned_cols=257  Identities=22%  Similarity=0.268  Sum_probs=211.1

Q ss_pred             eHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 045351           60 LYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATH  139 (349)
Q Consensus        60 Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~  139 (349)
                      ||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++++++
T Consensus         1 Ty~~l~~~~~~~a~~l~~-~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   79 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKA-QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDS   79 (436)
T ss_pred             CHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 9999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhh
Q 045351          140 DTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH  219 (349)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~  219 (349)
                      ........      .   ..+.......      ............+++++++|||||||.||+|.++|+++...+....
T Consensus        80 ~~~~~~~~------~---~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~  144 (436)
T TIGR01923        80 LLEEKDFQ------A---DSLDRIEAAG------RYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSK  144 (436)
T ss_pred             ccccccee------e---cchHhhhhcc------cccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHH
Confidence            64321100      0   0011111000      0111112244568899999999999999999999999999988888


Q ss_pred             ccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCC
Q 045351          220 AVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGY  299 (349)
Q Consensus       220 ~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~  299 (349)
                      ..++ +.++++++...|++|.+++..++.++..|+++++.+.++  .+++.++++++|++.++|.++..|.+.. ...  
T Consensus       145 ~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P~~l~~l~~~~-~~~--  218 (436)
T TIGR01923       145 ENLG-FTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLNRLLDEG-GHN--  218 (436)
T ss_pred             hhcC-CCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHHHHHHHHHhCc-CCC--
Confidence            8887 789999999999999999988899999999999997653  9999999999999999999999998875 321  


Q ss_pred             CCcchheehccCCCCCHHHHHHHHHHc-CCcccccccccCce
Q 045351          300 DLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLCLEFGAP  340 (349)
Q Consensus       300 ~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~~~~G~~  340 (349)
                        +++|.+++||+++++++.+.+.+.- +..+.|+.+|.|..
T Consensus       219 --~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  258 (436)
T TIGR01923       219 --ENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQ  258 (436)
T ss_pred             --CceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchh
Confidence              6899999999999999998876531 23344556666543

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-33  Score=249.78  Aligned_cols=321  Identities=16%  Similarity=0.181  Sum_probs=245.9

Q ss_pred             CCCCCCCCCC-cchhhhhhcccCCCCCCCCCeEEEeC----------CCC-----------ceeeHHHHHHHHHHHHHHH
Q 045351           18 RPSIAFPPET-TSVTSYVFSLLESHAPPPDTTALIDT----------ASR-----------HRILYPDLTLRIKTLAYSL   75 (349)
Q Consensus        18 ~~~~~~~~~~-~tl~~~l~~~~~~~~~~~~~~ai~~~----------~~~-----------~~~Ty~~l~~~~~~~a~~L   75 (349)
                      .+..+-+.+. .|+.+++...+  +++ +++.++-..          .+|           +++||.|+..++.++|+.|
T Consensus        30 ~~L~~~~~~g~~Tl~~~~~~~~--~k~-g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL  106 (678)
T KOG1180|consen   30 DGLVSPPNPGASTLYELFEECV--KKF-GKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGL  106 (678)
T ss_pred             CCccCCCCCCcccHHHHHHHHH--Hhc-CCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHH
Confidence            3344444333 89999999999  999 999988421          012           5899999999999999999


Q ss_pred             hhhcCCCCCCE-EEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----C
Q 045351           76 KTKYKLSKYDV-AFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----K  149 (349)
Q Consensus        76 ~~~~g~~~gd~-V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~  149 (349)
                      .+ .|++++++ ++|+++.+.+|..+++||++.+..+|-+...+..+.+.|.|.++++..+|++.++..++...     .
T Consensus       107 ~~-lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~  185 (678)
T KOG1180|consen  107 VK-LGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKT  185 (678)
T ss_pred             HH-hCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCc
Confidence            99 99997766 99999999999999999999999999999999999999999999999999999877765431     2


Q ss_pred             c-ceEEeCCCCc--------------------cccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeech
Q 045351          150 Y-GTVLLDSPEF--------------------EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQ  208 (349)
Q Consensus       150 ~-~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~  208 (349)
                      . .+|..+..+.                    +++...+      ......+.++.++|+|+|||||||||.||||+++|
T Consensus       186 vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG------~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H  259 (678)
T KOG1180|consen  186 VKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLG------KENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTH  259 (678)
T ss_pred             eeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhC------CcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEec
Confidence            2 2555553211                    1111111      11112334558899999999999999999999999


Q ss_pred             hhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHH--------HHHHhhcccEEE
Q 045351          209 RNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRML--------KAVEEFRVSHVV  280 (349)
Q Consensus       209 ~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~--------~~i~~~~~t~l~  280 (349)
                      .|+++.+.........+.+.|+++..+|+.|++.+..-+.+++-|+.+-+.+..+.....        -.+...++|.|.
T Consensus       260 ~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~  339 (678)
T KOG1180|consen  260 SNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMA  339 (678)
T ss_pred             ccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhh
Confidence            999999998877776689999999999999999998888999999999988654322222        334567999999


Q ss_pred             echHHHHHHHhcC--------C-----------------CCCCC----------------CCcchheehccCCCCCHHHH
Q 045351          281 LAPPVVLKMARDG--------G-----------------TMDGY----------------DLSSIEVVASGGAHLTLSVI  319 (349)
Q Consensus       281 ~~P~~l~~l~~~~--------~-----------------~~~~~----------------~l~~lr~i~~gG~~l~~~~~  319 (349)
                      ++|++|+++.+.-        .                 +....                --.+||++++||+||+++.-
T Consensus       340 ~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQ  419 (678)
T KOG1180|consen  340 AVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQ  419 (678)
T ss_pred             hhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHH
Confidence            9999997765431        0                 00000                01478999999999999999


Q ss_pred             HHHHHHcCCc--ccccccccCceeeecCCCC
Q 045351          320 RKYLQLNRTV--NRQLCLEFGAPIISLSKQQ  348 (349)
Q Consensus       320 ~~~~~~~~~~--~~~~~~~~G~~~i~~~~~~  348 (349)
                      +.+...+.+.  .=|+.||+++.-...++.|
T Consensus       420 rF~nic~C~Pv~qGYGLTEtca~~tv~e~~d  450 (678)
T KOG1180|consen  420 RFMNICFCCPVLQGYGLTETCAAATVLEPED  450 (678)
T ss_pred             HHHHHhccccccccccccchhcccEecChhh
Confidence            9999988433  3345577776555455443

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1e-31  Score=272.92  Aligned_cols=251  Identities=14%  Similarity=0.129  Sum_probs=201.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeC---CCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDT---ASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL  104 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~---~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~  104 (349)
                      .|+.+.+...+  +++ |+++|+...   .+.+++||+|+.++++++|+.|.+ +|+++||+|+|+++|+++|+++.+||
T Consensus       427 ~Tl~dll~~~a--~~~-pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~-lGV~~GDrVaIls~N~~Ewvia~lA~  502 (1452)
T PTZ00297        427 RSLGEMWERSV--TRH-STFRCLGQTSESGESEWLTYGTVDARARELGSGLLA-LGVRPGDVIGVDCEASRNIVILEVAC  502 (1452)
T ss_pred             CCHHHHHHHHH--HHC-CCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            68999999999  999 999999742   123789999999999999999999 99999999999999999999999999


Q ss_pred             HhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc---Cc-ceEEeCCC-C----------------cccc
Q 045351          105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL---KY-GTVLLDSP-E----------------FEPL  163 (349)
Q Consensus       105 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~---~~-~~~~~~~~-~----------------~~~~  163 (349)
                      +++|++++|+++  +.+++.++++.++++++|++.+...++.+.   .. .+++++.. +                +.++
T Consensus       503 ~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~l  580 (1452)
T PTZ00297        503 ALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFV  580 (1452)
T ss_pred             HHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHH
Confidence            999999999975  467999999999999999987765554331   22 24455421 0                1111


Q ss_pred             ccccCCCCCCCCccccccccCCCCcEEEEe---ccCCCCCCceeeechhhHHHHHhhhhccc--cCCCCCcEEEEecChh
Q 045351          164 SATDSLDYYDDDEERVRVSVSLSDPAAILY---SSGTTGMVKGALLTQRNLVAAVAGGHAVR--AARSRPAVVLCTVPYF  238 (349)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~l~~~p~~  238 (349)
                      ......     ..........++|++.|+|   ||||||.||||++||+|++..+.......  .....+|++++.+|++
T Consensus       581 l~~G~~-----~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLa  655 (1452)
T PTZ00297        581 EQKGRL-----CPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFA  655 (1452)
T ss_pred             HhcCcc-----cCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHH
Confidence            111100     0111122346789999996   99999999999999999999988765432  1145789999999999


Q ss_pred             hHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhc
Q 045351          239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARD  292 (349)
Q Consensus       239 ~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  292 (349)
                      |+++....+.+++.|+++.+   +++..+++.|+++++|+++++|.+++++...
T Consensus       656 HI~er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~  706 (1452)
T PTZ00297        656 MLFNRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQ  706 (1452)
T ss_pred             HHHHHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHH
Confidence            99998777788999999974   4789999999999999999999999988654

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=6.6e-31  Score=243.50  Aligned_cols=314  Identities=19%  Similarity=0.199  Sum_probs=243.7

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC----CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA----SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS  103 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA  103 (349)
                      .++.+.+..+...... ++.+|+++..    +...+||.|+.+++.++|..|.+ .|+++||+|++++|+.++++++++|
T Consensus        63 ln~~~n~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~-~g~~kGD~V~~~mPm~~e~~ia~lA  140 (626)
T KOG1175|consen   63 LNACYNCLDRHIKEKG-GDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRK-CGLKKGDTVAIYMPMIPEAVIAMLA  140 (626)
T ss_pred             hhhhHhhhhhhhhhcC-CCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHh-cCCCCCcEEEEeccCChHHHHHHHH
Confidence            5666666665422334 7888888652    22458999999999999999996 9999999999999999999999999


Q ss_pred             HHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcc-------------------eEEeCCCCccccc
Q 045351          104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYG-------------------TVLLDSPEFEPLS  164 (349)
Q Consensus       104 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~  164 (349)
                      |.++|++..++....+.+++...++.++++++++.+......+.....                   .+.+.....+...
T Consensus       141 ~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~  220 (626)
T KOG1175|consen  141 CARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFW  220 (626)
T ss_pred             HhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccH
Confidence            999999999999999999999999999999999987654433321100                   0000000000001


Q ss_pred             cccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-
Q 045351          165 ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-  243 (349)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-  243 (349)
                      ....   ............+.+|+.+|+|||||||.||++.+++..-..........+.+..+.|++.+...+-++.|. 
T Consensus       221 ~~~~---~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~  297 (626)
T KOG1175|consen  221 SLEL---KKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHS  297 (626)
T ss_pred             HHHh---hhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccc
Confidence            0000   001222235577889999999999999999999999887766665555554448999999999999999999 


Q ss_pred             HHHHhhhhcCCEEEEcC--CCCHHHHHHHHHhhcccEEEechHHHHHHHhcC-CCCCCCCCcchheehccCCCCCHHHHH
Q 045351          244 TCCLRSLGMGESLVCMG--KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-GTMDGYDLSSIEVVASGGAHLTLSVIR  320 (349)
Q Consensus       244 ~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~-~~~~~~~l~~lr~i~~gG~~l~~~~~~  320 (349)
                      +.++.+|+.|+++++.+  ++++..+++.+.+|++|.+++.|..++.|.+.. .....+++++||.+.++|++++++.++
T Consensus       298 ~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~e  377 (626)
T KOG1175|consen  298 YVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWE  377 (626)
T ss_pred             hhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHH
Confidence            56778999999999994  569999999999999999999999999777664 133445557899999999999999999


Q ss_pred             HHHHHcCC---cccccccccCceeeecCC
Q 045351          321 KYLQLNRT---VNRQLCLEFGAPIISLSK  346 (349)
Q Consensus       321 ~~~~~~~~---~~~~~~~~~G~~~i~~~~  346 (349)
                      ++.++++.   ...++.+|+|..+|+..+
T Consensus       378 w~~~~~~~~pv~e~~~qtEtG~~~i~~~~  406 (626)
T KOG1175|consen  378 WWKRVTGLDPIYETYGQTETGGICITPKP  406 (626)
T ss_pred             HHHHhcCccchhhceeeeccCceeeeccC
Confidence            99999965   455677999988776554

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.98  E-value=3.3e-31  Score=251.09  Aligned_cols=247  Identities=19%  Similarity=0.166  Sum_probs=183.1

Q ss_pred             cCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccc------ccccc----cCcceEEeCC-C-
Q 045351           91 SQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA------HKIPQ----LKYGTVLLDS-P-  158 (349)
Q Consensus        91 ~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~----~~~~~~~~~~-~-  158 (349)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++...      +.+..    .....+.+.. . 
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            5899999999999999999999999999999999999999999999986431      11111    1112222211 0 


Q ss_pred             -----------CccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCC
Q 045351          159 -----------EFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSR  227 (349)
Q Consensus       159 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~  227 (349)
                                 .+.++.....................++++++|+|||||||.||||++||++++.........++ +..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~  159 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMD-IQP  159 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcC-CCC
Confidence                       01111100000000000000111235689999999999999999999999998876655555555 678


Q ss_pred             CcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCC--CCCCCCcch
Q 045351          228 PAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSI  304 (349)
Q Consensus       228 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~~~~l~~l  304 (349)
                      +|++++..|++|.+|+..++.+|+.|+++++.+ .+++..+++.|+++++|++.++|.++..|.+.. .  ....++++|
T Consensus       160 ~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~-~~~~~~~~~~~L  238 (499)
T PLN03051        160 GDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTG-AFAMEGLDWSKL  238 (499)
T ss_pred             CCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcC-ccccccCCchhh
Confidence            899999999999999987889999999999987 478999999999999999999999999998764 3  345678999


Q ss_pred             heehccCCCCCHHHHHHHHHHcC----CcccccccccCc
Q 045351          305 EVVASGGAHLTLSVIRKYLQLNR----TVNRQLCLEFGA  339 (349)
Q Consensus       305 r~i~~gG~~l~~~~~~~~~~~~~----~~~~~~~~~~G~  339 (349)
                      |.+++||++++++..+++.+.++    ..+.|++||.+.
T Consensus       239 r~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~  277 (499)
T PLN03051        239 RVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELAS  277 (499)
T ss_pred             eEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccc
Confidence            99999999999999987776332    234456666543

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.96  E-value=1.4e-28  Score=207.62  Aligned_cols=211  Identities=19%  Similarity=0.100  Sum_probs=157.8

Q ss_pred             hhcccCCCCCCCCCeEEEeC-C---CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCC
Q 045351           34 VFSLLESHAPPPDTTALIDT-A---SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGV  109 (349)
Q Consensus        34 l~~~~~~~~~~~~~~ai~~~-~---~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~  109 (349)
                      |...+  ..+ |+++|++.. +   +++++||+|+.++++++|+.|++..|+++||+|+|+++|+++++++++|++++|+
T Consensus         2 ~~~~~--~~~-p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLL--AAD-PASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhh--hhC-CCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            45566  778 999999743 2   2457999999999999999999525999999999999999999999999999999


Q ss_pred             eEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCC---------CccccccccCCCCCCCCccccc
Q 045351          110 VVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSP---------EFEPLSATDSLDYYDDDEERVR  180 (349)
Q Consensus       110 ~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  180 (349)
                      +++|++             .+++++++++.+..+.+... ...+.+...         ...... ..............+
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  143 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAAGS-GEVVALSLDPLGRRVAGELPPGVI-DFAPEVRVHGDQFAP  143 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhcccC-CceEEEeccccccCCCCCCCCccc-chhhhhhccCCCCCC
Confidence            999995             57899999988776664321 222222100         000100 000000001111111


Q ss_pred             c-ccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEE
Q 045351          181 V-SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVC  258 (349)
Q Consensus       181 ~-~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~  258 (349)
                      . ...++|++.|+||||+         +|.+++...    ...+ +.++|+++ .+|++|.+|+ ..++.+|+.|+++++
T Consensus       144 ~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~-l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~  208 (227)
T TIGR03089       144 YEPPDATAPALVAGGGEW---------TGAELVAAA----RAAG-LPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVL  208 (227)
T ss_pred             CCCCCCCcceeeeccccc---------cHHHHHHHH----hhcC-CCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEE
Confidence            1 3456899999999985         666666654    3334 68899999 9999999999 688899999999999


Q ss_pred             cCCCCHHHHHHHHHhhccc
Q 045351          259 MGKFDFGRMLKAVEEFRVS  277 (349)
Q Consensus       259 ~~~~~~~~~~~~i~~~~~t  277 (349)
                      +++|++..+++.|+++|+|
T Consensus       209 ~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       209 VTHPDPARLDQIAETERVT  227 (227)
T ss_pred             ecCCCHHHHHHHHHhhcCC
Confidence            9999999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=7.7e-27  Score=228.04  Aligned_cols=290  Identities=20%  Similarity=0.246  Sum_probs=237.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.+.+...+  ... |++.|+++.  +..+||+++..+++++|+.|.+ .|+.+++.|+++.+.+.++++.++|+++.
T Consensus       227 ~~i~~~f~~~a--~~~-p~~~a~~~~--~~~lty~el~~~a~~la~~l~~-~g~~~~~~V~i~~~rs~~~i~~~l~ilka  300 (642)
T COG1020         227 LTIHLLFEEQA--ATT-PDAVALVRG--GQQLTYAELDARANRLARLLIS-LGVGPGETVAILADRSLELVVALLAVLKA  300 (642)
T ss_pred             chHHHHHHHHH--HhC-CCceeEecC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCCHHHHHHHHHHHhc
Confidence            67999999999  999 999999997  8999999999999999999998 99999999999998899999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |+.++|+++..+.+++.++++++++..+++.............  +.++.....    .       ...........+++
T Consensus       301 G~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~-------~~~~~~~~~~~~~~  367 (642)
T COG1020         301 GAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--LALDDALSE----I-------PDTDPIPQALLGDA  367 (642)
T ss_pred             CCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--ccccccccc----C-------CccCcccccCCCCC
Confidence            9999999999999999999999999999988433221111111  111110000    0       00011122445689


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCC---CCH
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGK---FDF  264 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~  264 (349)
                      .+|++|||||||.||||..+|+++.+.+.+....+. ...+++++...++.++.+...++.++..|+++++...   .++
T Consensus       368 ~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~-~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~  446 (642)
T COG1020         368 LAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFG-LDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDP  446 (642)
T ss_pred             eEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcC-CCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCH
Confidence            999999999999999999999999998877777777 7888999999999999999999999999999999963   589


Q ss_pred             HHHHHHHHhhcccEEEechHHHHHHHhcCCCCC--CCCCcchheehccCCCCCHHHHHHHHHHcCCcccccccccCc
Q 045351          265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMD--GYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGA  339 (349)
Q Consensus       265 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~--~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~G~  339 (349)
                      ..+.+.+.++++|++..+|.++..++... ...  ....+.+|.+.+||+.++.++..++.+..+. .....+.||.
T Consensus       447 ~~l~~~~~~~~vt~~~~~p~~~~~~~~~~-~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~-~~~l~~~ygp  521 (642)
T COG1020         447 AALLELLEAQGITVLLLVPLLLRLLLLAA-LAPDLISPCERLRQLLSGGEALPLALVQRLLQLAAL-ARRLLNLYGP  521 (642)
T ss_pred             HHHHHHHHHcCCEEEEecHHHHHHHHhch-hhccccCCcccccEEEEcCCCCCHHHHHHHHHhccc-cceEeeccCc
Confidence            99999999999999999999999998763 222  2223459999999999999999999887643 2334555553

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.85  E-value=7.9e-20  Score=173.95  Aligned_cols=307  Identities=14%  Similarity=0.190  Sum_probs=225.6

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeC----CCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDT----ASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLS  103 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~----~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA  103 (349)
                      .++.++|..++  ++. ||.+|+..-    ..+.++||.+|..++.+++..|..+.-+++||.|+++++++.|++++++|
T Consensus       770 ~~ile~Lq~R~--a~t-p~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRA--AKT-PDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHh--hcC-CCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            57999999999  999 999999863    23489999999999999999999977899999999999999999999999


Q ss_pred             HHhcCCeEecCCCCC------CHHHHHHHHhhcCCeEEEEcCcccccccccCc------ceE--EeCCCCccccccccCC
Q 045351          104 LFSLGVVVSPCNPSC------TIPEILRQIHLSKPVIAFATHDTAHKIPQLKY------GTV--LLDSPEFEPLSATDSL  169 (349)
Q Consensus       104 ~~~~G~~~v~i~~~~------~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~  169 (349)
                      |+.+|.+++|+.|..      ..+.+..+++.+++..|+++.+....+++...      ..+  .++.+.+..-......
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~~  926 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRKK  926 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhhh
Confidence            999999999998764      34578889999999999999876655543111      000  0111111100110000


Q ss_pred             CCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHh
Q 045351          170 DYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLR  248 (349)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~  248 (349)
                      ...+......+.....+.+|++-+.--++|.--++.++|.++++.++...+... +.+..-++.+.+.+...|+ .+++.
T Consensus       927 ~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~-l~~~rpl~~~~~~~sGlgf~~wcLl 1005 (1363)
T KOG3628|consen  927 NIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQ-LYKSRPLLGCSSPYSGLGFNHWCLL 1005 (1363)
T ss_pred             hhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHc-cccCCceEEEecCccchhHHHHHHH
Confidence            000012222223445688999999999999999999999999999999888887 5666667777777666667 89999


Q ss_pred             hhhcCCEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchh------eehccCCCCCHHH
Q 045351          249 SLGMGESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIE------VVASGGAHLTLSV  318 (349)
Q Consensus       249 ~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr------~i~~gG~~l~~~~  318 (349)
                      ..++|.+.++.++    -++..++..|++|++.-.+.+-..++...+.. ..+..+++...      +++..-+.--..+
T Consensus      1006 gVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l-~t~~enl~~~gnn~s~s~vv~~~~RPr~al 1084 (1363)
T KOG3628|consen 1006 GVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGL-ETSVENLSKRGNNTSSSIVVPAEERPRIAL 1084 (1363)
T ss_pred             HHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcc-ccccchhhhhhcccccceeeecCCccHHHH
Confidence            9999999888854    38999999999999999998888888888876 55544443322      2233344445566


Q ss_pred             HHHHHHHcC---CcccccccccCc
Q 045351          319 IRKYLQLNR---TVNRQLCLEFGA  339 (349)
Q Consensus       319 ~~~~~~~~~---~~~~~~~~~~G~  339 (349)
                      ..-|.+.|-   .......+.|+.
T Consensus      1085 i~sf~klfa~igLsp~avStsys~ 1108 (1363)
T KOG3628|consen 1085 IASFKKLFAAIGLSPRAVSTSYSS 1108 (1363)
T ss_pred             HHHHHHHHHHcCCChhhhcccccc
Confidence            777777662   222234566654

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.83  E-value=7.5e-20  Score=166.49  Aligned_cols=145  Identities=20%  Similarity=0.191  Sum_probs=120.0

Q ss_pred             CCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCC--CCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCC
Q 045351          186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARS--RPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKF  262 (349)
Q Consensus       186 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~  262 (349)
                      +..++++|||||||.||+|++||+++...+......++ +.  +.+++++.+|++|.+|+ ..++.++..|+++++..++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~  173 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILG-ERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA  173 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhC-cCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence            56899999999999999999999999988877766665 33  34689999999999998 6778899999999999889


Q ss_pred             CHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--CcccccccccCc
Q 045351          263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEFGA  339 (349)
Q Consensus       263 ~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~G~  339 (349)
                      ++..+++.++.+  |+++++|.+++.|.+..     .++++++. ++||+++++++++++.+..+  ..+.|++||.|+
T Consensus       174 ~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~-----~~l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~  244 (386)
T TIGR02372       174 PASGIMRHARPG--DLIVGTPFIWEQLADLD-----YRLPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGG  244 (386)
T ss_pred             ChHHHHHhhccC--CEEEECcHHHHHHHhhC-----cCCCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccc
Confidence            999999888754  89999999999997653     34667776 57899999999999988632  234567788765

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.79  E-value=3.8e-18  Score=155.15  Aligned_cols=152  Identities=26%  Similarity=0.278  Sum_probs=122.8

Q ss_pred             ccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEc--
Q 045351          182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCM--  259 (349)
Q Consensus       182 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~--  259 (349)
                      ...++++++++|||||||.||+|+++|+++...+......+   ...++++..+|++|.+|+..++.++..|+++++.  
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCc
Confidence            34568999999999999999999999999998877665543   3557899999999999998888999999999883  


Q ss_pred             -CCCCHHHHHHHHHhhc--ccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc-CCccccccc
Q 045351          260 -GKFDFGRMLKAVEEFR--VSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLCL  335 (349)
Q Consensus       260 -~~~~~~~~~~~i~~~~--~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~~  335 (349)
                       ..+++..+++.+++++  .++...+|..+..++...  ....+++++|.+++||+++++++.+++.+.- +..+.|+.+
T Consensus       108 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~--~~~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~T  185 (358)
T PRK07824        108 SAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDP--AATAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMS  185 (358)
T ss_pred             CCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCc--cccCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCC
Confidence             4689999999999998  566777898888877663  2335688999999999999999999887631 223344556


Q ss_pred             ccC
Q 045351          336 EFG  338 (349)
Q Consensus       336 ~~G  338 (349)
                      |.|
T Consensus       186 E~~  188 (358)
T PRK07824        186 ETS  188 (358)
T ss_pred             ccC
Confidence            654

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.68  E-value=3e-16  Score=145.78  Aligned_cols=153  Identities=14%  Similarity=0.069  Sum_probs=117.8

Q ss_pred             CCCCcEEEEeccCCCCCCceeeechhhHHHHHhhh---hccccCCCCCcEEEEecChhhH-hhHHHHHhhhhcCCEEEEc
Q 045351          184 SLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGG---HAVRAARSRPAVVLCTVPYFHS-YGFTCCLRSLGMGESLVCM  259 (349)
Q Consensus       184 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~~l~~~p~~~~-~g~~~~~~~l~~G~~~v~~  259 (349)
                      ..++++.+++||||||.||+|.+||+++.......   ...++ +.++|++++..+..+. .++...+.++..|++++.+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  151 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAG-GRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI  151 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcC-CCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence            45678899999999999999999999987654332   22234 6788988887665432 3334456688899999988


Q ss_pred             CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCC--CCcchheehccCCCCCHHHHHHHHHHcCC--ccccccc
Q 045351          260 GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGY--DLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCL  335 (349)
Q Consensus       260 ~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~  335 (349)
                      +..++..+++.|+++++|++.++|+++..|++.. ...+.  ...++|.+++||+++++++.+.+.+.|+.  .+.|+++
T Consensus       152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~-~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~t  230 (422)
T TIGR02155       152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEEL-KRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLS  230 (422)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHH-HHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccch
Confidence            7778899999999999999999999999988754 32222  23589999999999999999999998853  2345556


Q ss_pred             ccC
Q 045351          336 EFG  338 (349)
Q Consensus       336 ~~G  338 (349)
                      |.|
T Consensus       231 E~~  233 (422)
T TIGR02155       231 EVI  233 (422)
T ss_pred             hhc
Confidence            653

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.58  E-value=1.6e-14  Score=134.73  Aligned_cols=152  Identities=21%  Similarity=0.165  Sum_probs=114.6

Q ss_pred             cCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcc---ccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEE
Q 045351          183 VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV---RAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVC  258 (349)
Q Consensus       183 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~  258 (349)
                      ...++++.+.+||||||.||+|.+||.++..........   .+ +.++|+++...|..+..|. ...+.++..|++++.
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G-~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQG-FTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcC-CCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            345688899999999999999999999988766544333   24 6788999999988776555 444567888988765


Q ss_pred             cCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCC--CCcchheehccCCCCCHHHHHHHHHHcCC--cccccc
Q 045351          259 MGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGY--DLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLC  334 (349)
Q Consensus       259 ~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~  334 (349)
                      ...  ....++.|+++++|.+..+|+.+..|++.. ...+.  ...++|.+++||++++++..+.+.+.|+.  .+.|++
T Consensus       162 ~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~-~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~  238 (445)
T TIGR03335       162 EGK--CTFPIRIIESYRPTGIVASVFKLLRLARRM-KAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGS  238 (445)
T ss_pred             CCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHH-HHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCCh
Confidence            443  346689999999999999999888877643 22222  24689999999999999999999988853  233455


Q ss_pred             cccC
Q 045351          335 LEFG  338 (349)
Q Consensus       335 ~~~G  338 (349)
                      +|.|
T Consensus       239 TE~~  242 (445)
T TIGR03335       239 TEGT  242 (445)
T ss_pred             hhhh
Confidence            5543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.57  E-value=6.2e-15  Score=144.43  Aligned_cols=288  Identities=15%  Similarity=0.108  Sum_probs=191.5

Q ss_pred             chhhhhhcccCCCCCCCCCeEEEeC----CC--CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHH
Q 045351           29 SVTSYVFSLLESHAPPPDTTALIDT----AS--RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYL  102 (349)
Q Consensus        29 tl~~~l~~~~~~~~~~~~~~ai~~~----~~--~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~l  102 (349)
                      ++.+.+...+  ... |++.+..+-    ..  -..+||......++.+++.|.. .|...|+.|++++..+.++++..+
T Consensus        37 ~~~~~~~~~~--~~~-~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~-~~~~~~~~v~i~~~~~~d~~v~v~  112 (1032)
T KOG1178|consen   37 TLEDSFRREL--AEA-PENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVS-LGSLRGTTVAIYMLPSVDLVVSVF  112 (1032)
T ss_pred             chhhHHHHHH--hhc-ccCCCceEeecccccccccchhhhhhhcccchhHHHhhh-cccccCceEEEeccCcCCeeeeee
Confidence            5666777777  777 777776542    11  2689999999999999999998 999999999999999999999999


Q ss_pred             HHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEE-eCCCCc---cccccccCCCCCCCCccc
Q 045351          103 SLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVL-LDSPEF---EPLSATDSLDYYDDDEER  178 (349)
Q Consensus       103 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~  178 (349)
                      +.+++|..+++++|.++..+....+...-....-+.-+....+.-....... .....+   .+.......    .....
T Consensus       113 ~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~sv~~~~~~f~~~~~----~~~~r  188 (1032)
T KOG1178|consen  113 AVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKLSVETIADSFQMVLH----NEDTR  188 (1032)
T ss_pred             ehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhccccccchhhccchhhhhhc----cCCCc
Confidence            9999999999999999921111111111010011101111111000000000 000000   011111000    12222


Q ss_pred             cccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEE
Q 045351          179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLV  257 (349)
Q Consensus       179 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v  257 (349)
                      ...-..+|..+++.||||+||.||+|.-+|..+.+...+....+. ....+++-.....+.+... ......|+.|+.+.
T Consensus       189 ~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~-~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~  267 (1032)
T KOG1178|consen  189 EIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFP-PTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLL  267 (1032)
T ss_pred             ceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCC-cCccchhhhhheeecccchHHHHhhHhhcCceee
Confidence            223456778999999999999999999999999999999888877 5666665222223333334 44445666666666


Q ss_pred             EcCCC---CHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCC-------------CCCCcchheehccCCCCCHHHHHH
Q 045351          258 CMGKF---DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMD-------------GYDLSSIEVVASGGAHLTLSVIRK  321 (349)
Q Consensus       258 ~~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~-------------~~~l~~lr~i~~gG~~l~~~~~~~  321 (349)
                      .+...   ++.++.+.+++|+++..+.+|++.++++... ...             -...+.|+....+|++...++...
T Consensus       268 ~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~-~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s  346 (1032)
T KOG1178|consen  268 VPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAIL-TTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTS  346 (1032)
T ss_pred             cccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhc-CcchhhhhhhhhcccccccchhheeeeecCCccchhhhhh
Confidence            66332   4799999999999999999999998888765 221             111247999999999999999997


Q ss_pred             HHHHc
Q 045351          322 YLQLN  326 (349)
Q Consensus       322 ~~~~~  326 (349)
                      +.+.+
T Consensus       347 ~~~~~  351 (1032)
T KOG1178|consen  347 TFDLL  351 (1032)
T ss_pred             hhhcc
Confidence            77766

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.17  E-value=3.1e-10  Score=102.09  Aligned_cols=157  Identities=16%  Similarity=0.084  Sum_probs=119.2

Q ss_pred             cCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc--CCCCCcEEEEecCh-hhHhhHHHHHhhhhcCCEEEEc
Q 045351          183 VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA--ARSRPAVVLCTVPY-FHSYGFTCCLRSLGMGESLVCM  259 (349)
Q Consensus       183 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~~v~~  259 (349)
                      ...++...|--||||||.|+.+.+|+..+......+...+.  ....+|++..+.-. .+..|+..-.++-..|++++-.
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~  166 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI  166 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence            34456677999999999999999999988776665544432  25677877666553 2334444445566678777777


Q ss_pred             CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCC--CCCcchheehccCCCCCHHHHHHHHHHcCCcc--ccccc
Q 045351          260 GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG--YDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN--RQLCL  335 (349)
Q Consensus       260 ~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~--~~~~~  335 (349)
                      ..-+.++-++.|+.+++|++.++|+.+..|++.. ...+  ..-.+||.+++|||+++++..+.+.++|+...  +|+.+
T Consensus       167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~-~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGlt  245 (438)
T COG1541         167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEA-EEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLT  245 (438)
T ss_pred             CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHH-HHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccc
Confidence            6668899999999999999999999999999886 4443  33468999999999999999999999997554  56666


Q ss_pred             ccCce
Q 045351          336 EFGAP  340 (349)
Q Consensus       336 ~~G~~  340 (349)
                      |-+++
T Consensus       246 E~~g~  250 (438)
T COG1541         246 EGFGP  250 (438)
T ss_pred             cccCC
Confidence            65444

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.09  E-value=4.5e-10  Score=108.52  Aligned_cols=281  Identities=14%  Similarity=0.121  Sum_probs=197.2

Q ss_pred             hhhhhhcccCCCCCCCCCeEEEeCC-CC--ceeeHHHHHHHHHHHHH-HHhhhcCCCCCCEEEEEcCC--CchHHHHHHH
Q 045351           30 VTSYVFSLLESHAPPPDTTALIDTA-SR--HRILYPDLTLRIKTLAY-SLKTKYKLSKYDVAFLLSQN--SVRVPVLYLS  103 (349)
Q Consensus        30 l~~~l~~~~~~~~~~~~~~ai~~~~-~~--~~~Ty~~l~~~~~~~a~-~L~~~~g~~~gd~V~i~~~n--~~~~~~~~lA  103 (349)
                      +...++.+-  ... +..+|.+.-+ .|  ..+||..+..++.+.|+ .|.+ -|+.++|+|.++...  ..++++..++
T Consensus        96 ~~avl~~~~--nhs-~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~k-sgl~~~~~vvL~Y~~~e~ie~~isl~g  171 (1363)
T KOG3628|consen   96 IIAVLRYRR--NHS-ATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNK-SGLKPGDRVVLYYRKCEAIEFLISLFG  171 (1363)
T ss_pred             hHHHHHhhc--cCC-CCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhc-cCCCCCcEEEEEEEhhhhhHHhhhhcc
Confidence            444444444  445 5566665432 23  68999999999999999 5665 999999999999874  4899999999


Q ss_pred             HHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcc------eEEeCCCCccccccccCCCCCCCCcc
Q 045351          104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYG------TVLLDSPEFEPLSATDSLDYYDDDEE  177 (349)
Q Consensus       104 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (349)
                      |...|..++|+++..+.+++..+++.....+++........+.....+      +......++...       +..+.  
T Consensus       172 c~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~~~k~~-------~~~~k--  242 (1363)
T KOG3628|consen  172 CFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTNDFKGN-------YTKDK--  242 (1363)
T ss_pred             ccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhcccccce-------eehhh--
Confidence            999999999999999999999999999999999877655444331100      111111111100       00011  


Q ss_pred             ccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhh--------------------ccccCCCCCcEEEEecCh
Q 045351          178 RVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH--------------------AVRAARSRPAVVLCTVPY  237 (349)
Q Consensus       178 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--------------------~~~~~~~~~~~~l~~~p~  237 (349)
                      ......... ..+|-||++++|.--|++++|+ +..+.+...                    ..+ +....+.++.....
T Consensus       243 ~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~  319 (1363)
T KOG3628|consen  243 IKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVF-PVPSEDVLLTNLDP  319 (1363)
T ss_pred             ccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcc-ccCcccceeeccCc
Confidence            111112222 7899999999999999999998 544333211                    111 24566777888888


Q ss_pred             hhHhhH-HHHHhhhhcCCEEEEcCC---CCHHHHHHHHHhhcccEEEechHHHHHHHhc----C------CCCCCCCCcc
Q 045351          238 FHSYGF-TCCLRSLGMGESLVCMGK---FDFGRMLKAVEEFRVSHVVLAPPVVLKMARD----G------GTMDGYDLSS  303 (349)
Q Consensus       238 ~~~~g~-~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~----~------~~~~~~~l~~  303 (349)
                      .-..|+ .+++.++++|.+.+.++.   +.|..+...+.+++++++..--..+.+....    +      .+....++++
T Consensus       320 s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~ss  399 (1363)
T KOG3628|consen  320 SQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSS  399 (1363)
T ss_pred             ccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccc
Confidence            888888 889999999999999976   6888999999999999888765555444321    1      1233467899


Q ss_pred             hheehccCCCCCHHHHHHHHHHc
Q 045351          304 IEVVASGGAHLTLSVIRKYLQLN  326 (349)
Q Consensus       304 lr~i~~gG~~l~~~~~~~~~~~~  326 (349)
                      +|.+.+....+..+...-...++
T Consensus       400 lk~C~Vtc~~vd~~~~~ivs~~w  422 (1363)
T KOG3628|consen  400 LKGCMVTCTAVDTEFQEIVSDRW  422 (1363)
T ss_pred             eeeeEEeeeecchHHHHHHHHhh
Confidence            99999999999988665444443

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=98.48  E-value=2.2e-06  Score=78.99  Aligned_cols=140  Identities=15%  Similarity=0.025  Sum_probs=91.1

Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccc--cCCCCCcEEEEe--cChhhHhhHHHHHhhhhcCCE-EEEcC-C
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVR--AARSRPAVVLCT--VPYFHSYGFTCCLRSLGMGES-LVCMG-K  261 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~l~~--~p~~~~~g~~~~~~~l~~G~~-~v~~~-~  261 (349)
                      -..+..||||||.|=.+..+..............+  ..+..++++...  .+. +.+      .++..... +-..+ .
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly------~~~~~~~~~~~~~~l~  173 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY------QSVNNRWISLDFFDLL  173 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH------HHHHhccceeeecCCC
Confidence            45677899999999999999886654433221111  113333443333  221 111      11111111 22221 1


Q ss_pred             CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc--ccccccc
Q 045351          262 FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV--NRQLCLE  336 (349)
Q Consensus       262 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~--~~~~~~~  336 (349)
                      -+.+..++.|++++++++.+.|+.+..|++.. ...+.+ .+++.++++||.++++..+.+.+.|+..  +.|+++|
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~-~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE  248 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEV-MEGELT-IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE  248 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHH-HhcCCC-CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch
Confidence            36789999999999999999999999999864 333323 4789999999999999999999999643  3345566

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=96.96  E-value=0.017  Score=52.36  Aligned_cols=158  Identities=14%  Similarity=0.122  Sum_probs=87.5

Q ss_pred             cCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhh---ccccCCCC-CcEEEEecChhhH---hhH--HHHHhhhhcC
Q 045351          183 VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH---AVRAARSR-PAVVLCTVPYFHS---YGF--TCCLRSLGMG  253 (349)
Q Consensus       183 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~-~~~~l~~~p~~~~---~g~--~~~~~~l~~G  253 (349)
                      ...+++..++-||||||.|.-+.+.+..+..+...+.   ..+..... .-.++...|-...   .+.  ...+..+..+
T Consensus        86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~  165 (365)
T PF04443_consen   86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG  165 (365)
T ss_pred             cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence            4456788899999999999777777666655543322   22221122 2234444443211   111  2333444555


Q ss_pred             CEEEEc-CCCCHHHHHHHHH----hhcccEEEechHHHHHHHhcCCCCC--CCCCc-chheehccC------CCCCH-HH
Q 045351          254 ESLVCM-GKFDFGRMLKAVE----EFRVSHVVLAPPVVLKMARDGGTMD--GYDLS-SIEVVASGG------AHLTL-SV  318 (349)
Q Consensus       254 ~~~v~~-~~~~~~~~~~~i~----~~~~t~l~~~P~~l~~l~~~~~~~~--~~~l~-~lr~i~~gG------~~l~~-~~  318 (349)
                      ..-.+- ..+|.+.+...+.    +.++..+++.|.++..++... +..  ...++ ..+.+-.||      +.+++ +.
T Consensus       166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l-~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef  244 (365)
T PF04443_consen  166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDEL-EERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEF  244 (365)
T ss_pred             ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHH-HhcCCcccCCCCCEEEeCCCCCccccCccCHHHH
Confidence            553332 2467777777665    446788999998877766544 322  23343 344554444      34655 44


Q ss_pred             HHHHHHHcCC-cccccccccCcee
Q 045351          319 IRKYLQLNRT-VNRQLCLEFGAPI  341 (349)
Q Consensus       319 ~~~~~~~~~~-~~~~~~~~~G~~~  341 (349)
                      .+.+.+.|+. ..-.+.++||+..
T Consensus       245 ~~~l~~~~Gv~~~~~i~~~ygmtE  268 (365)
T PF04443_consen  245 YARLQEVFGVIPIENIYDMYGMTE  268 (365)
T ss_pred             HHHHHHHHCCCCHHHeeeeeeccc
Confidence            4555566765 2334667777654

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=95.93  E-value=0.054  Score=49.68  Aligned_cols=82  Identities=20%  Similarity=0.047  Sum_probs=68.6

Q ss_pred             ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCC--chHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeE
Q 045351           57 HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNS--VRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVI  134 (349)
Q Consensus        57 ~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~  134 (349)
                      -.+|+.|....+..+|+.|.. .|..+||+|.+...-+  ...+-+.+|+.++|++++|+++.. -+.-..++++.++.+
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~-~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tv  185 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYS-AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTV  185 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcE
Confidence            369999999999999999999 9999999998887622  122778899999999999998843 445577889999999


Q ss_pred             EEEcCc
Q 045351          135 AFATHD  140 (349)
Q Consensus       135 i~~~~~  140 (349)
                      |.+...
T Consensus       186 I~~tps  191 (438)
T COG1541         186 IAATPS  191 (438)
T ss_pred             EEEChH
Confidence            999865

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=91.33  E-value=1.9  Score=40.54  Aligned_cols=79  Identities=14%  Similarity=0.128  Sum_probs=61.0

Q ss_pred             ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCch--HHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeE
Q 045351           57 HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVR--VPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVI  134 (349)
Q Consensus        57 ~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~  134 (349)
                      -.+|..++...+...++.+.. .|+.+||++.+..+.+..  .....+++..+|+.++|...   .+....++++.++.+
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~-~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~  179 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVS-QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTG  179 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCE
Confidence            357899999888888888887 899999999998876543  33456788999999887653   234467788889998


Q ss_pred             EEEcC
Q 045351          135 AFATH  139 (349)
Q Consensus       135 i~~~~  139 (349)
                      ++...
T Consensus       180 l~~~p  184 (445)
T TIGR03335       180 IVASV  184 (445)
T ss_pred             EEECH
Confidence            87654

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=89.73  E-value=2.7  Score=39.10  Aligned_cols=82  Identities=16%  Similarity=0.022  Sum_probs=62.8

Q ss_pred             eeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCc--hHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEE
Q 045351           58 RILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSV--RVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIA  135 (349)
Q Consensus        58 ~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i  135 (349)
                      .+|..++......+++.+.. .|+.+||++....+.+.  ......++.+++|+.+++++... .+.+...+++.++.++
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~-~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l  171 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRA-AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII  171 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHH-cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence            46777877777777788887 89999999887665443  23334677889999999887654 5778889999999999


Q ss_pred             EEcCcc
Q 045351          136 FATHDT  141 (349)
Q Consensus       136 ~~~~~~  141 (349)
                      +.....
T Consensus       172 ~~~Ps~  177 (422)
T TIGR02155       172 MVTPSY  177 (422)
T ss_pred             EEcHHH
Confidence            887653

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=82.58  E-value=11  Score=31.75  Aligned_cols=54  Identities=7%  Similarity=-0.037  Sum_probs=43.5

Q ss_pred             hhhcCCCCCCEEEEEcCCCc--hHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCC
Q 045351           76 KTKYKLSKYDVAFLLSQNSV--RVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKP  132 (349)
Q Consensus        76 ~~~~g~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~  132 (349)
                      .. .|+.++|++. ..|-..  .....+++++..|++.+.. ++.+++++-..+++.++
T Consensus       171 ~~-~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v  226 (227)
T TIGR03089       171 RA-AGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV  226 (227)
T ss_pred             hh-cCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence            55 7899999999 888554  3345689999999998887 58889998888887765

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	349
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		5e-18
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		3e-17
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-12
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-11
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-11
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-11
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-11
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		9e-11
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-10
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-10
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-07
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		3e-06
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		3e-06
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		5e-04
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		5e-04
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		5e-04
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		6e-04
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		6e-04
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		6e-04

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 29/326 (8%)
Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRIL 60
           M+P+  F     IF S  P I + P+   + SYV   L +H+  P    LI+ A+     
Sbjct: 1   MNPQEEF-----IFRSKLPDI-YIPKNLPLHSYVLENLSNHSSKP---CLINGANGDVYT 51
Query: 61  YPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           Y D+ L                  DV  L   +S    + +L     G +++  NP  T 
Sbjct: 52  YADVEL-TARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYD-----DD 175
            E+ +    S+  +         K+      +   D       SA D   ++      D+
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARES---DVKVMCVDSAPDGCLHFSELTQADE 167
Query: 176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXX---XXXXXL 232
            E  +V +S  D  A+ YSSGTTG+ KG +LT + L                       L
Sbjct: 168 NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVIL 227
Query: 233 CTVPYFHSYGFT----CCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLK 288
           C +P FH Y       C LR   +G  ++ M KF+ G +L  +E+++VS   + PPV++ 
Sbjct: 228 CVLPMFHIYALNSIMLCGLR---VGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS 284
Query: 289 MARDGGTMDGYDLSSIEVVASGGAHL 314
           +A+    +D +DLSS+ ++ SGGA L
Sbjct: 285 IAKS-PDLDKHDLSSLRMIKSGGAPL 309

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 139/337 (41%), Gaps = 38/337 (11%)
Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRIL 60
           M+ ++   +   IF S  P I + P   S+  Y+F  +   A  P    LI+  + H   
Sbjct: 35  MEKQSNNNNSDVIFRSKLPDI-YIPNHLSLHDYIFQNISEFATKP---CLINGPTGHVYT 90
Query: 61  YPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           Y D+ + I                DV  LL  N     + +L+    G   +  NP  T 
Sbjct: 91  YSDVHV-ISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKY--GTVL--LDSPEFEPL------------S 164
            EI +Q   S   +         KI  L+   G V+  +D  E  P+            S
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQS 209
Query: 165 ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXX 224
            T++ +  D       V +S  D  A+ YSSGTTG+ KG +LT + L             
Sbjct: 210 TTEASEVIDS------VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP 263
Query: 225 XX---XXXXXLCTVPYFHSYGFT----CCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVS 277
                     LC +P FH Y       C LR   +G +++ M KF+   +L+ ++  +V+
Sbjct: 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLR---VGAAILIMPKFEINLLLELIQRCKVT 320
Query: 278 HVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHL 314
              + PP+VL +A+   T + YDLSSI VV SG A L
Sbjct: 321 VAPMVPPIVLAIAKSSET-EKYDLSSIRVVKSGAAPL 356

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 18/246 (7%)
Query: 89  LLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL 148
           L S+N     +  ++   +GV V+P N   T+ E++  + +SKP I F++     K+  +
Sbjct: 82  LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 149 KYGT------VLLDSP-EFEPLSATDSL-------DYYDDDEERVRVSVSLSDPAAILYS 194
           +         V+LDS  ++      D+         Y     + V V       A I+ S
Sbjct: 142 QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGYQASSFKTVEVDRK-EQVALIMNS 200
Query: 195 SGTTGMVKGALLTQRNLXXXXXXXX--XXXXXXXXXXXXLCTVPYFHSYGFTCCLRSLGM 252
           SG+TG+ KG  LT  N+                      L  VP+ H +G    L  L  
Sbjct: 201 SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLIC 260
Query: 253 GESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA 312
           G  +V + KFD    LK +++++ ++V+L  P +  +      ++ YDLS++  +ASGGA
Sbjct: 261 GFRVVMLTKFDEETFLKTLQDYKCTNVILV-PTLFAILNKSELLNKYDLSNLVEIASGGA 319
Query: 313 HLTLSV 318
            L+  V
Sbjct: 320 PLSKEV 325

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 18/246 (7%)
Query: 89  LLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL 148
           L S+N     +  ++   +GV V+P N   T+ E++  + +SKP I F++     K+  +
Sbjct: 82  LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 149 KYGT------VLLDSP-EFEPLSATDSL-------DYYDDDEERVRVSVSLSDPAAILYS 194
           +         V+LDS  ++      D+         +     + V V       A I+ S
Sbjct: 142 QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRK-EQVALIMNS 200
Query: 195 SGTTGMVKGALLTQRNLXXXXXXXX--XXXXXXXXXXXXLCTVPYFHSYGFTCCLRSLGM 252
           SG+TG+ KG  LT  N+                      L  VP+ H +G    L  L  
Sbjct: 201 SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLIC 260
Query: 253 GESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA 312
           G  +V + KFD    LK +++++ + V+L  P +  +      ++ YDLS++  +ASGGA
Sbjct: 261 GFRVVMLTKFDEETFLKTLQDYKCTSVILV-PTLFAILNKSELLNKYDLSNLVEIASGGA 319
Query: 313 HLTLSV 318
            L+  V
Sbjct: 320 PLSKEV 325

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 18/246 (7%)
Query: 89  LLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL 148
           L S+N     +  ++   +GV V+P N   T+ E++  + +SKP I F++     K+  +
Sbjct: 82  LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 149 KYGT------VLLDSP-EFEPLSATDSL-------DYYDDDEERVRVSVSLSDPAAILYS 194
           +         V+LDS  ++      D+         +     + V V       A I+ S
Sbjct: 142 QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRK-EQVALIMNS 200
Query: 195 SGTTGMVKGALLTQRNLXXXXXXXX--XXXXXXXXXXXXLCTVPYFHSYGFTCCLRSLGM 252
           SG+TG+ KG  LT  N+                      L  VP+ H +G    L  L  
Sbjct: 201 SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLIC 260
Query: 253 GESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA 312
           G  +V + KFD    LK +++++ + V+L  P +  +      ++ YDLS++  +ASGGA
Sbjct: 261 GFRVVMLTKFDEETFLKTLQDYKCTSVILV-PTLFAILNKSELLNKYDLSNLVEIASGGA 319
Query: 313 HLTLSV 318
            L+  V
Sbjct: 320 PLSKEV 325

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 28/249 (11%)
Query: 91  SQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK- 149
           S+NS++  +  L    +GV V+P N      E+L  +++S+P + F +     KI  ++ 
Sbjct: 87  SENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQK 146
Query: 150 -----YGTVLLDSP-EFEPLSAT------------DSLDYYDDDEERVRVSVSLSDPAAI 191
                   +++DS  +++   +             +  D+  +  +R +        A I
Sbjct: 147 KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI------ALI 200
Query: 192 LYSSGTTGMVKGALLTQRNLXXXXXXXX--XXXXXXXXXXXXLCTVPYFHSYGFTCCLRS 249
           + SSG+TG+ KG  L  R L                      L  VP+ H +G    L  
Sbjct: 201 MNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGY 260
Query: 250 LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVAS 309
           L  G  +V M +F+    L++++++++   +L P +   +A+    +D YDLS++  +AS
Sbjct: 261 LISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKS-TLIDKYDLSNLHEIAS 319
Query: 310 GGAHLTLSV 318
           GGA L+  V
Sbjct: 320 GGAPLSKEV 328

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 127/317 (40%), Gaps = 29/317 (9%)
Query: 23  FPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXX 82
           +P E  +    +   ++ +A  P T A  D  +   I Y +                   
Sbjct: 49  YPLEDGTAGEQLHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGL 108
Query: 83  XXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA 142
              +A + S+NS++  +       +GV V+P N      E+   + +S+P I F +    
Sbjct: 109 QHHIA-VCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRAL 167
Query: 143 HKIPQLK------YGTVLLDSPE-----------FEPL--SATDSLDYYDDDEERVRVSV 183
            KI  ++         V+LDS E            E    +  +  DY  D  +R   + 
Sbjct: 168 QKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETAT- 226
Query: 184 SLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXX--XXXLCTVPYFHSY 241
                A I+ SSG+TG+ KG  LT +N+                      L  +P+ H +
Sbjct: 227 -----ALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGF 281
Query: 242 GFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDL 301
           G    L  L  G  +V M +F+    L++++++++   +L P +    A+    +D YDL
Sbjct: 282 GMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLVDKYDL 340
Query: 302 SSIEVVASGGAHLTLSV 318
           S++  +ASGGA L   V
Sbjct: 341 SNLHEIASGGAPLAKEV 357

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 23/318 (7%)
Query: 19  PSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIXXXXXXXXXX 78
           P+  +P E  +    +   ++ +A  P T A  D      I Y +    +          
Sbjct: 11  PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY-FEMSVRLAEAMKR 69
Query: 79  XXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFAT 138
                     + S+NS++  +  L    +GV V+P N      E+L  +++S+P + F +
Sbjct: 70  YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 129
Query: 139 HDTAHKIPQLK------YGTVLLDSP-EFEPLSAT---------DSLDYYDDDEERVRVS 182
                KI  ++         +++DS  +++   +             + YD   E     
Sbjct: 130 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 189
Query: 183 VSLSDPAAILYSSGTTGMVKGALLTQRN--LXXXXXXXXXXXXXXXXXXXXLCTVPYFHS 240
            ++   A I+ SSG+TG+ KG  L  R   +                    L  VP+ H 
Sbjct: 190 KTI---ALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 246
Query: 241 YGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
           +G    L  L  G  +V M +F+    L++++++++   +L P +    A+    +D YD
Sbjct: 247 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLIDKYD 305
Query: 301 LSSIEVVASGGAHLTLSV 318
           LS++  +ASGGA L+  V
Sbjct: 306 LSNLHEIASGGAPLSKEV 323

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 23/318 (7%)
Query: 19  PSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIXXXXXXXXXX 78
           P+  +P E  +    +   ++ +A  P T A  D      I Y +    +          
Sbjct: 16  PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY-FEMSVRLAEAMKR 74
Query: 79  XXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFAT 138
                     + S+NS++  +  L    +GV V+P N      E+L  +++S+P + F +
Sbjct: 75  YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 134
Query: 139 HDTAHKIPQLK------YGTVLLDSP-EFEPLSAT---------DSLDYYDDDEERVRVS 182
                KI  ++         +++DS  +++   +             + YD   E     
Sbjct: 135 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 194
Query: 183 VSLSDPAAILYSSGTTGMVKGALLTQRN--LXXXXXXXXXXXXXXXXXXXXLCTVPYFHS 240
            ++   A I+ SSG+TG+ KG  L  R   +                    L  VP+ H 
Sbjct: 195 KTI---ALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 251
Query: 241 YGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
           +G    L  L  G  +V M +F+    L++++++++   +L P +    A+    +D YD
Sbjct: 252 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLIDKYD 310
Query: 301 LSSIEVVASGGAHLTLSV 318
           LS++  +ASGGA L+  V
Sbjct: 311 LSNLHEIASGGAPLSKEV 328

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 130/321 (40%), Gaps = 29/321 (9%)
Query: 19  PSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIXXXXXXXXXX 78
           P+  +P E  +    +   ++ +A  P T A  D      I Y +    +          
Sbjct: 11  PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY-FEMSVRLAEAMKR 69
Query: 79  XXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFAT 138
                     + S+NS++  +  L    +GV V+P N      E+L  +++S+P + F +
Sbjct: 70  YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 129
Query: 139 HDTAHKIPQLK------YGTVLLDSP-EFEPLSAT------------DSLDYYDDDEERV 179
                KI  ++         +++DS  +++   +             +  D+  +  +R 
Sbjct: 130 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 189
Query: 180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRN--LXXXXXXXXXXXXXXXXXXXXLCTVPY 237
           +        A I+ SSG+TG+ KG  L  R   +                    L  VP+
Sbjct: 190 KTI------ALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 243
Query: 238 FHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMD 297
            H +G    L  L  G  +V M +F+    L++++++++   +L P +    A+    +D
Sbjct: 244 HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLID 302
Query: 298 GYDLSSIEVVASGGAHLTLSV 318
            YDLS++  +ASGGA L+  V
Sbjct: 303 KYDLSNLHEIASGGAPLSKEV 323

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYF 238
           +  S +L D A+I+++SGTTG  K    T RN                     L  +P +
Sbjct: 156 LNTSFNLDDIASIMFTSGTTGPQKAVPQTFRN-HYASAIGCKESLGFDRDTNWLSVLPIY 214
Query: 239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG 298
           H  G +  LR++  G ++  + KF+  ++L  ++  R++H+ L P   L      G  + 
Sbjct: 215 HISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQ-TLNWLMQQGLHEP 273
Query: 299 YDLSSIEVVASGGAHLTLSVIRKYLQLN 326
           Y+L  I +   GGA L+ ++I   LQ N
Sbjct: 274 YNLQKILL---GGAKLSATMIETALQYN 298

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 104/266 (39%), Gaps = 32/266 (12%)
Query: 85  DVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK 144
           D   LL  NSV    L+     LG V  P N             L+ P ++F   D+  K
Sbjct: 69  DRVALLMPNSVEFCCLFYGAAKLGAVAVPIN-----------TRLAAPEVSFILSDSGSK 117
Query: 145 IPQLKYGTV---LLDSPEFE---PLSATDSLDYYDDDEERVRVSVSLSDPAA-------- 190
           +  + YG     ++D+   +   P + TD +   D   ER+R S +  +PA         
Sbjct: 118 V--VIYGAPSAPVIDAIRAQADPPGTVTDWIGA-DSLAERLR-SAAADEPAVECGGDDNL 173
Query: 191 -ILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSYGFTCCLRS 249
            I+Y+SGTTG  KG + T  ++                    L  +P FH    T  + S
Sbjct: 174 FIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL-LLPLPMFHVAALTTVIFS 232
Query: 250 LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVAS 309
              G +L+ M +FD  ++   + E RV  +  A P +L   R        D        +
Sbjct: 233 AMRGVTLISMPQFDATKVWSLIVEERVC-IGGAVPAILNFMRQVPEFAELDAPDFRYFIT 291
Query: 310 GGAHLTLSVIRKYLQLNRTVNRQLCL 335
           GGA +  ++I+ Y   N  V +   L
Sbjct: 292 GGAPMPEALIKIYAAKNIEVVQGYAL 317

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 104/266 (39%), Gaps = 32/266 (12%)
Query: 85  DVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK 144
           D   LL  NSV    L+     LG V  P N             L+ P ++F   D+  K
Sbjct: 55  DRVALLMPNSVEFCCLFYGAAKLGAVAVPIN-----------TRLAAPEVSFILSDSGSK 103
Query: 145 IPQLKYGTV---LLDSPEFE---PLSATDSLDYYDDDEERVRVSVSLSDPAA-------- 190
           +  + YG     ++D+   +   P + TD +   D   ER+R S +  +PA         
Sbjct: 104 V--VIYGAPSAPVIDAIRAQADPPGTVTDWIGA-DSLAERLR-SAAADEPAVECGGDDNL 159
Query: 191 -ILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSYGFTCCLRS 249
            I+Y+SGTTG  KG + T  ++                    L  +P FH    T  + S
Sbjct: 160 FIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL-LLPLPMFHVAALTTVIFS 218
Query: 250 LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVAS 309
              G +L+ M +FD  ++   + E RV  +  A P +L   R        D        +
Sbjct: 219 AMRGVTLISMPQFDATKVWSLIVEERVC-IGGAVPAILNFMRQVPEFAELDAPDFRYFIT 277
Query: 310 GGAHLTLSVIRKYLQLNRTVNRQLCL 335
           GGA +  ++I+ Y   N  V +   L
Sbjct: 278 GGAPMPEALIKIYAAKNIEVVQGYAL 303

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 88/222 (39%), Gaps = 9/222 (4%)
Query: 51  IDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVV 110
           I+TA+  +I Y +L  R                  VA   ++ SV   VLYL+    G V
Sbjct: 21  IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVA-AQTEKSVEALVLYLATVRAGGV 79
Query: 111 VSPCNPSCTIPEILRQIHLSKPVIAF---ATHDTAHKIPQLKYGTVLLDSPEFEPLSATD 167
             P N + T+ E+   I  ++P I     +  D    I      TV    P+    S TD
Sbjct: 80  YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-SLTD 138
Query: 168 SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXX 227
           +       E    +     D AAILY+SGTTG  KGA L+  NL                
Sbjct: 139 AAAGAS--EAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNL-ASNSLTLVDYWRFTP 195
Query: 228 XXXXLCTVPYFHSYG-FTCCLRSLGMGESLVCMGKFDFGRML 268
               +  +P +H++G F     +L    S + + KFD  ++L
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKIL 237

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45  PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
           PD  AL   A   R+ + +L  R+                 VA +++ NS  V +  L+L
Sbjct: 16  PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
             LG V +  NP   S  + E++++  ++  VIA      A  I Q   G  ++   +  
Sbjct: 75  HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
              EP S    ++    D +R       + PA I Y+SGTTG+ K A++ QR        
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
                          L  +P +H  GF   L  +L +  + V + +F     L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
           V+ +   P
Sbjct: 245 VTSLFATP 252

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45  PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
           PD  AL   A   R+ + +L  R+                 VA +++ NS  V +  L+L
Sbjct: 16  PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
             LG V +  NP   S  + E++++  ++  VIA      A  I Q   G  ++   +  
Sbjct: 75  HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
              EP S    ++    D +R       + PA I Y+SGTTG+ K A++ QR        
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
                          L  +P +H  GF   L  +L +  + V + +F     L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
           V+ +   P
Sbjct: 245 VTSLFATP 252

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45  PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
           PD  AL   A   R+ + +L  R+                 VA +++ NS  V +  L+L
Sbjct: 16  PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
             LG V +  NP   S  + E++++  ++  VIA      A  I Q   G  ++   +  
Sbjct: 75  HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
              EP S    ++    D +R       + PA I Y+SGTTG+ K A++ QR        
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
                          L  +P +H  GF   L  +L +  + V + +F     L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
           V+ +   P
Sbjct: 245 VTSLFATP 252

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45  PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
           PD  AL   A   R+ + +L  R+                 VA +++ NS  V +  L+L
Sbjct: 16  PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
             LG V +  NP   S  + E++++  ++  VIA      A  I Q   G  ++   +  
Sbjct: 75  HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
              EP S    ++    D +R       + PA I Y+SGTTG+ K A++ QR        
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
                          L  +P +H  GF   L  +L +  + V + +F     L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
           V+ +   P
Sbjct: 245 VTSLFATP 252

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45  PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
           PD  AL   A   R+ + +L  R+                 VA +++ NS  V +  L+L
Sbjct: 16  PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
             LG V +  NP   S  + E++++  ++  VIA      A  I Q   G  ++   +  
Sbjct: 75  HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
              EP S    ++    D +R       + PA I Y+SGTTG+ K A++ QR        
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
                          L  +P +H  GF   L  +L +  + V + +F     L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
           V+ +   P
Sbjct: 245 VTSLFATP 252

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	6e-85
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	4e-83
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-81
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	9e-79
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	5e-61
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	7e-46
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	6e-45
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	8e-45
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	3e-43
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-40
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-40
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-39
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	7e-38
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-36
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-35
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-23
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-18
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-18
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	4e-18
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-17
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	7e-17
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	5e-12
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-09
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	7e-08
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-07
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-07
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-06
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	1e-04

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  275 bits (705), Expect = 6e-85
 Identities = 93/335 (27%), Positives = 149/335 (44%), Gaps = 20/335 (5%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRIL 60
           M+ ++   +   IF S  P I  P    S+  Y+F   ++ +       LI+  + H   
Sbjct: 35  MEKQSNNNNSDVIFRSKLPDIYIPNHL-SLHDYIF---QNISEFATKPCLINGPTGHVYT 90

Query: 61  YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           Y D+ +  + +A +   K  +++ DV  LL  N     + +L+    G   +  NP  T 
Sbjct: 91  YSDVHVISRQIAANFH-KLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149

Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGT----VLLDSPEFEP-----LSATDSLDY 171
            EI +Q   S   +         KI  L+       V +D  E  P     L  T+    
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQS 209

Query: 172 YDDDEERV-RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVA---GGHAVRAARSR 227
             +  E +  V +S  D  A+ YSSGTTG+ KG +LT + LV +VA    G         
Sbjct: 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 269

Query: 228 PAVVLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVV 286
             V+LC +P FH Y     +   L +G +++ M KF+   +L+ ++  +V+   + PP+V
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 329

Query: 287 LKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
           L +A+   T + YDLSSI VV SG A L   +   
Sbjct: 330 LAIAKSSET-EKYDLSSIRVVKSGAAPLGKELEDA 363

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  260 bits (668), Expect = 4e-83
 Identities = 89/329 (27%), Positives = 149/329 (45%), Gaps = 21/329 (6%)

Query: 1   MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRIL 60
           M+P+     E  IF S  P I  P +   + SYV    E+ +       LI+ A+     
Sbjct: 1   MNPQ-----EEFIFRSKLPDIYIP-KNLPLHSYVL---ENLSNHSSKPCLINGANGDVYT 51

Query: 61  YPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
           Y D+ L  + +A  L  K  + + DV  L   +S    + +L     G +++  NP  T 
Sbjct: 52  YADVELTARRVASGLN-KIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110

Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGT----VLLDSPEFEPLSATDSLDYYDDDE 176
            E+ +    S+  +         K+      +    + +DS     L  ++      D+ 
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQ--ADEN 168

Query: 177 ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVA---GGHAVRAARSRPAVVLC 233
           E  +V +S  D  A+ YSSGTTG+ KG +LT + L+ +VA    G           V+LC
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILC 228

Query: 234 TVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARD 292
            +P FH Y     +   L +G  ++ M KF+ G +L  +E+++VS   + PPV++ +A+ 
Sbjct: 229 VLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS 288

Query: 293 GGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
               D +DLSS+ ++ SGGA L   +   
Sbjct: 289 PDL-DKHDLSSLRMIKSGGAPLGKELEDT 316

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  257 bits (658), Expect = 2e-81
 Identities = 71/327 (21%), Positives = 132/327 (40%), Gaps = 19/327 (5%)

Query: 10  ETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIK 69
              I     P         +    +   ++ +A  P T A  D      I Y +      
Sbjct: 4   AKNIKKGPAPFYPLED--GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSV 61

Query: 70  TLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHL 129
            LA ++K +Y L+      + S+NS++  +  L    +GV V+P N      E+L  +++
Sbjct: 62  RLAEAMK-RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNI 120

Query: 130 SKPVIAFATHDTAHKIPQLKYGT------VLLDSPE-------FEPLSATDSLDYYDDDE 176
           S+P + F +     KI  ++         +++DS               +     +++ +
Sbjct: 121 SQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYD 180

Query: 177 ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVA-GGHAVRAARSRPA-VVLCT 234
                       A I+ SSG+TG+ KG  L  R      +     +   +  P   +L  
Sbjct: 181 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 240

Query: 235 VPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGG 294
           VP+ H +G    L  L  G  +V M +F+    L++++++++   +L P +    A+   
Sbjct: 241 VPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL 300

Query: 295 TMDGYDLSSIEVVASGGAHLTLSVIRK 321
             D YDLS++  +ASGGA L+  V   
Sbjct: 301 I-DKYDLSNLHEIASGGAPLSKEVGEA 326

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  250 bits (640), Expect = 9e-79
 Identities = 74/330 (22%), Positives = 133/330 (40%), Gaps = 20/330 (6%)

Query: 7   FCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTL 66
             ++  I    +P    P E  S  + +   +E +       A  +  +     Y +   
Sbjct: 4   MENDENIVVGPKPFY--PIEEGSAGTQLRKYMERY-AKLGAIAFTNAVTGVDYSYAEYLE 60

Query: 67  RIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQ 126
           +   L  +L+  Y L       L S+N     +  ++   +GV V+P N   T+ E++  
Sbjct: 61  KSCCLGKALQ-NYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119

Query: 127 IHLSKPVIAFATHDTAHKIPQLKYGT------VLLDSPE-------FEPLSATDSLDYYD 173
           + +SKP I F++     K+  ++         V+LDS          +     ++   + 
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQ 179

Query: 174 DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA--VV 231
               +          A I+ SSG+TG+ KG  LT  N+V   +                V
Sbjct: 180 ASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAV 239

Query: 232 LCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR 291
           L  VP+ H +G    L  L  G  +V + KFD    LK +++++ + V+L P +   + +
Sbjct: 240 LTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK 299

Query: 292 DGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
                + YDLS++  +ASGGA L+  V   
Sbjct: 300 SELL-NKYDLSNLVEIASGGAPLSKEVGEA 328

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  203 bits (519), Expect = 5e-61
 Identities = 69/328 (21%), Positives = 129/328 (39%), Gaps = 21/328 (6%)

Query: 9   SETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASR------HRILYP 62
           S    +    PS+ +P    S+   + +  E      + TA+I    +        + + 
Sbjct: 2   SLELKYKIGFPSLYYPK--ISLADRIDAAAEKF---GEKTAIISAEPKFPSEFPESMNFL 56

Query: 63  DLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPE 122
           ++    K LA  +  +  + K +   +   NS+   +   +L+ +     P NP     E
Sbjct: 57  EICEVTKKLASGIS-RKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFE 115

Query: 123 ILRQIHLSKPVIAFATHDTAHKIPQLKYGT----VLLDSPEFEPLSATDSLDYYDDDEER 178
           +   ++ S+                +   T    V +   E   LS  + +D   +D E 
Sbjct: 116 LEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLS--EVMDSGSEDFEN 173

Query: 179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYF 238
           V+V+    D A I Y+ GTTGM KG +LT  NL A                 ++  +P F
Sbjct: 174 VKVNPE-EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHM-DTIVGCMPMF 231

Query: 239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM-D 297
           HS  F      + +G   V MG F+   + + +E+++ +     PP +  +     +   
Sbjct: 232 HSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK 291

Query: 298 GYDLSSIEVVASGGAHLTLSVIRKYLQL 325
            YD S ++V A+G   +  +++ K L+L
Sbjct: 292 TYDWSYLKVFATGAWPVAPALVEKLLKL 319

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  162 bits (413), Expect = 7e-46
 Identities = 63/284 (22%), Positives = 107/284 (37%), Gaps = 7/284 (2%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYD-VAFLLSQNSVRVPVLYLS 103
           P   A ++ ++  R+ Y  +       A  L     ++K D VA LL  NSV    L+  
Sbjct: 30  PRLQAYVEPSTDVRMTYAQMNALANRCADVLT-ALGIAKGDRVA-LLMPNSVEFCCLFYG 87

Query: 104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPL 163
              LG V  P N     PE+   +  S   +      +A  I  ++       +      
Sbjct: 88  AAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG 147

Query: 164 SATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA 223
           + + +        +   V     D   I+Y+SGTTG  KG + T  ++ +A +       
Sbjct: 148 ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASS--WAST 205

Query: 224 ARSRPA-VVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLA 282
              R    +L  +P FH    T  + S   G +L+ M +FD  ++   + E RV      
Sbjct: 206 IDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAV 265

Query: 283 PPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN 326
           P ++  M +        D        +GGA +  ++I+ Y   N
Sbjct: 266 PAILNFMRQVPE-FAELDAPDFRYFITGGAPMPEALIKIYAAKN 308

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  159 bits (405), Expect = 6e-45
 Identities = 75/317 (23%), Positives = 126/317 (39%), Gaps = 26/317 (8%)

Query: 31  TSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYD-VAFL 89
            + +F+ L      P   A+  TA+  +I Y +L  R   +A  L     L   D VA  
Sbjct: 2   NANLFARLFDKLDDPHKLAIE-TAAGDKISYAELVARAGRVANVLV-ARGLQVGDRVA-A 58

Query: 90  LSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL- 148
            ++ SV   VLYL+    G V  P N + T+ E+   I  ++P I          I  + 
Sbjct: 59  QTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIA 118

Query: 149 -KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLT 207
            K G  +         S TD+     +    +       D AAILY+SGTTG  KGA+L+
Sbjct: 119 AKVGATVETLGPDGRGSLTDAAAGASEAFATI--DRGADDLAAILYTSGTTGRSKGAMLS 176

Query: 208 QRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCC-LRSLGMGESLVCMGKFDFG 265
             NL +       V   R  P  V++  +P +H++G       +L    S++ + KFD  
Sbjct: 177 HDNLASNSL--TLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPD 234

Query: 266 RMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
           ++L  +   R + ++  P    ++ +    +       + +  SG A L     R++   
Sbjct: 235 KILDLMA--RATVLMGVPTFYTRLLQSPR-LTKETTGHMRLFISGSAPLLADTHREWSAK 291

Query: 326 NRTVNRQLCLEFGAPII 342
                       G  ++
Sbjct: 292 -----------TGHAVL 297

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  159 bits (405), Expect = 8e-45
 Identities = 64/326 (19%), Positives = 127/326 (38%), Gaps = 41/326 (12%)

Query: 33  YVFSLLESHAPP-PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYD-VAFLL 90
            +   L   A       A+ D   +    Y +L      LA  LK      +   V   +
Sbjct: 2   SLDFWLYKQAQQNGHHIAITD--GQESYTYQNLYCEASLLAKRLKAY----QQSRVGLYI 55

Query: 91  SQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK- 149
             NS++  +L  + +   + ++  N   T  E+  Q+      + F T     +  Q+  
Sbjct: 56  -DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS 114

Query: 150 ------------YGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGT 197
                          +L ++   +  ++ +++   +     +  S +L D A+I+++SGT
Sbjct: 115 LDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGT 174

Query: 198 TGMVKGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCCLRSLGMGESL 256
           TG  K    T RN  A+  G     +         L  +P +H  G +  LR++  G ++
Sbjct: 175 TGPQKAVPQTFRNHYASAIG--CKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTV 232

Query: 257 VCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTL 316
             + KF+  ++L  ++  R++H+ L P  +  + + G   + Y+L  I     GGA L+ 
Sbjct: 233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH-EPYNLQKI---LLGGAKLSA 288

Query: 317 SVIRKYLQLNRTVNRQLCLEFGAPII 342
           ++I               L++  PI 
Sbjct: 289 TMIET------------ALQYNLPIY 302

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  155 bits (394), Expect = 3e-43
 Identities = 61/283 (21%), Positives = 105/283 (37%), Gaps = 13/283 (4%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYD-VAFLLSQNSVRVPVLYLS 103
           PD TA +      R+ + D   R + LA  L  +  +   D VA +LSQN   +  L  +
Sbjct: 20  PDRTAFMVDG--VRLTHRDYLARAERLASGLL-RDGVHTGDRVA-ILSQNCSEMIELIGA 75

Query: 104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPL 163
           +  +G ++ P N      EI   +    P +  A  D    +  +      +        
Sbjct: 76  VALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD 135

Query: 164 SATDSLDYYD--DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV 221
            +     + D   D          +D   I++++   G  +GAL++Q NL+ A +    V
Sbjct: 136 GSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSS--LV 193

Query: 222 RAARSRPA-VVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVV 280
            A R   A V L  +P FH  G    L     G + V   KFD  +  + +E  +V+ + 
Sbjct: 194 DAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMA 253

Query: 281 LAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYL 323
              P++  +           L+S+  V       T+       
Sbjct: 254 EFAPMLGNILDQAAP---AQLASLRAVTGLDTPETIERFEATC 293

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  148 bits (376), Expect = 1e-40
 Identities = 64/336 (19%), Positives = 113/336 (33%), Gaps = 49/336 (14%)

Query: 15  HSLRPSIAFPPETTSVTSYVFSLLESHAP-PPDTTALIDTASRHRILYPDLTLRIKTLAY 73
           H    S    P  + ++S   +L  +    P D  AL        + Y +L       A 
Sbjct: 7   HHHHSS-GLVPRGSHMSSLFPALSPAPTGAPADRPALRF--GERSLTYAELAAAAGATAG 63

Query: 74  SLKTKYKLSKYD-VAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKP 132
            +           VA      ++   V  ++    GV   P NP     E+   +  S P
Sbjct: 64  RIG------GAGRVAVWA-TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAP 116

Query: 133 --VIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAA 190
             V+A    +    +  L+   V + +    P    D                   DPA 
Sbjct: 117 SLVLAPPDAELPPALGALERVDVDVRARGAVPEDGADD-----------------GDPAL 159

Query: 191 ILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCC-LR 248
           ++Y+SGTTG  KGA++ +R L   +       A +     V++  +P FH +G     L 
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTLDA--LADAWQWTGEDVLVQGLPLFHVHGLVLGILG 217

Query: 249 SLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR--DGGTMDGYDLSSIEV 306
            L  G S+  +G+F      + + +   + +   P +  ++A            L+   +
Sbjct: 218 PLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAKALAGARL 276

Query: 307 VASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPII 342
           + SG A L +    +                G  +I
Sbjct: 277 LVSGSAALPVHDHERIAAA-----------TGRRVI 301

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  147 bits (373), Expect = 3e-40
 Identities = 65/333 (19%), Positives = 108/333 (32%), Gaps = 34/333 (10%)

Query: 23  FPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLS 82
            PP   +  +Y   L   +      TA ID        Y +L  R +  A +L+    + 
Sbjct: 18  APPALFNFAAY---LFRLNETRAGKTAYIDDT--GSTTYGELEERARRFASALR-TLGVH 71

Query: 83  KYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA 142
             +   L+  ++V +PV +L     GVV    N   T  + +  +  S      A+    
Sbjct: 72  PEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV 131

Query: 143 HKI-------PQLKYGTVLLDSPEFEP---LSATDSLDYYDDDEERVRVSVSLSDPAAIL 192
             +              ++    E EP       + +D      +         D A  L
Sbjct: 132 QNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCD--DIAFWL 189

Query: 193 YSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCCLR-SL 250
           YSSG+TG  KG + T  NL    A  +A          VV      F +YG    L   L
Sbjct: 190 YSSGSTGKPKGTVHTHANLY-WTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPL 248

Query: 251 GMGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVAS 309
            +G + + M  +     +   + E R +     P +   M      +      +I +  S
Sbjct: 249 SVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-LPARADVAIRICTS 307

Query: 310 GGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPII 342
            G  L   +  ++              FG  I+
Sbjct: 308 AGEALPREIGERFTAH-----------FGCEIL 329

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  145 bits (368), Expect = 1e-39
 Identities = 67/286 (23%), Positives = 111/286 (38%), Gaps = 13/286 (4%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYD-VAFLLSQNSVRVPVLYLS 103
           PD  AL   A   R+ + +L  R++ +A  L     L     VA +++ NS  V +  L+
Sbjct: 16  PDHCALAVPARGLRLTHAELRARVEAVAARLH-ADGLRPQQRVA-VVAPNSADVVIAILA 73

Query: 104 LFSLGVVVSPCNPSCTIPEILRQIHLS--KPVIAFATHDTAHKIPQLKYGTVLLDSPEFE 161
           L  LG V +  NP     E+   I        +       A  I Q   G  ++   +  
Sbjct: 74  LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLV 133

Query: 162 PLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVA-AVAGGHA 220
                 S                 + PA I Y+SGTTG+ K A++ QR   +  +     
Sbjct: 134 RDGEPYS-----YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQ 188

Query: 221 VRAARSRPAVVLCTVPYFHSYGFTCC-LRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHV 279
           V     R  VVL  +P +H  GF    + +L +  + V + +F     L+ V++ +V+ +
Sbjct: 189 VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSL 248

Query: 280 VLAPPVVLKMARD-GGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
              P  +  +A           L S+  V   GA +  +V+    Q
Sbjct: 249 FATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQ 294

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  142 bits (359), Expect = 7e-38
 Identities = 59/305 (19%), Positives = 108/305 (35%), Gaps = 27/305 (8%)

Query: 34  VFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQN 93
           +  +L  HA   D+ A+ID     ++ Y +L      LA SL+ +  +   + A +   N
Sbjct: 29  LTDILTRHAAS-DSIAVID--GERQLSYRELNQAADNLACSLRRQ-GIKPGETALVQLGN 84

Query: 94  SVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVI-----AFATHD-------T 141
              + + + +L  LGV       S    E+       +P +       A           
Sbjct: 85  VAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTF 144

Query: 142 AHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMV 201
             +   ++   +L DS E     A +        E+         + A    S GTTG  
Sbjct: 145 VTEHSSIRVVQLLNDSGEHNLQDAIN-----HPAEDFTATPSPADEVAYFQLSGGTTGTP 199

Query: 202 KGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCC--LRSLGMGESLVC 258
           K    T  +   +V    +V   +       LC +P  H+Y  +    L     G ++V 
Sbjct: 200 KLIPRTHNDYYYSVRR--SVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257

Query: 259 MGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTM-DGYDLSSIEVVASGGAHLTLS 317
                       +E+ +V+   L PP V    +          L+S++++  GGA L+ +
Sbjct: 258 AADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSAT 317

Query: 318 VIRKY 322
           +  + 
Sbjct: 318 LAARI 322

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  137 bits (347), Expect = 2e-36
 Identities = 64/292 (21%), Positives = 103/292 (35%), Gaps = 28/292 (9%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
            D  A+          Y +L  R   LA   + K  + + D   +   N      +  +L
Sbjct: 39  GDRIAITC--GNTHWSYRELDTRADRLAAGFQ-KLGIQQKDRVVVQLPNIKEFFEVIFAL 95

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVI-----AFATHD-------TAHKIPQLKYGT 152
           F LG +     PS    EI      ++        A++  D          K+P LK   
Sbjct: 96  FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII 155

Query: 153 VLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLV 212
           V  ++ EF PL            E      V  SD A +  S G+TG+ K    T  + +
Sbjct: 156 VAGEAEEFLPLEDLH-------TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI 208

Query: 213 AAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCC--LRSLGMGESLVCMGKFDFGRMLK 269
            ++    +V       + V L  +P  H+Y  +    L  L  G  +V            
Sbjct: 209 YSLK--RSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFP 266

Query: 270 AVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
            +E  +V+   L PP+ +            DLSS++V+  GGA  +    R+
Sbjct: 267 LIEREKVTITALVPPLAMVWMDAAS-SRRDDLSSLQVLQVGGAKFSAEAARR 317

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  134 bits (341), Expect = 1e-35
 Identities = 53/292 (18%), Positives = 95/292 (32%), Gaps = 24/292 (8%)

Query: 45  PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL 104
           P + A+I      ++ Y +L      LA  L  +  L K D A +   N     +++ +L
Sbjct: 44  PHSLAIIC--GERQLSYIELDRLSTNLATRLA-EKGLGKGDTALVQLPNVAEFYIVFFAL 100

Query: 105 FSLGVVVSPCNPSCTIPEILRQIHLSKPV--IAFATHDT----------AHKIPQLKYGT 152
              GVVV     S    E+   I   +P   I    H+                  +   
Sbjct: 101 LKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIIL 160

Query: 153 VLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLV 212
           +L        L           +      S    + A    S G+TG  K    T  +  
Sbjct: 161 MLNHQATDFGL---LDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYD 217

Query: 213 AAVAGGHAVRAARSRPA-VVLCTVPYFHSYGFTCC--LRSLGMGESLVCMGKFDFGRMLK 269
            +V    +           +LC +P  H++  +    L  L  G  +V     +      
Sbjct: 218 YSVRA--SAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFS 275

Query: 270 AVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
            ++  +V+   L P  V+    +        + S++++  GGA    S+ R+
Sbjct: 276 IIQRHQVNMASLVPSAVIMWL-EKAAQYKDQIQSLKLLQVGGASFPESLARQ 326

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  100 bits (251), Expect = 2e-23
 Identities = 43/300 (14%), Positives = 97/300 (32%), Gaps = 24/300 (8%)

Query: 39  ESHAPPPDTTALI---DTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSV 95
           E     P + AL             + +L+   +  A  L     L + D   ++     
Sbjct: 51  EKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110

Query: 96  RVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKI-------PQL 148
              ++ L     G++  P        +IL ++ +SK     A  +   ++       P L
Sbjct: 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSL 170

Query: 149 KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQ 208
           +   ++ +      L+    L+        V       + +AI ++SGT+G+ K A  + 
Sbjct: 171 RIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQ--EASAIYFTSGTSGLPKMAEHSY 228

Query: 209 RNLVAAVAGGHAVRAARSRPAVVLCTVP----YFHSYGFTCCLRSLGMGESLVC--MGKF 262
            +L             ++   ++                   +    +G       + KF
Sbjct: 229 SSLGLKAKMDAGWTGLQAS-DIMWTISDTGWILNILCSL---MEPWALGACTFVHLLPKF 284

Query: 263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKY 322
           D   +LK +  + +   ++  P+V +M      +  Y    ++   + G  L    +  +
Sbjct: 285 DPLVILKTLSSYPIK-SMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENW 342

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 85.6 bits (213), Expect = 2e-18
 Identities = 64/305 (20%), Positives = 112/305 (36%), Gaps = 36/305 (11%)

Query: 45  PDTTALI--DTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYD-VAFLLSQNSVRVPVLY 101
                +    T   HR  Y ++  R + L   L+    +   D VA L   N  R    Y
Sbjct: 32  GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLR-ALGVGVGDRVATLGF-NHFRHLEAY 89

Query: 102 LSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKI----PQLKY--GTVLL 155
            ++  +G V+   NP  +  EI   ++ ++  +     +    +     +LK     V++
Sbjct: 90  FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVM 149

Query: 156 DSPEFEPLSATDSL-----DYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRN 210
           D    E   A +       D     E              + Y++GTTG+ KG + + R 
Sbjct: 150 DEKAPEGYLAYEEALGEEADPVRVPER---------AACGMAYTTGTTGLPKGVVYSHRA 200

Query: 211 LV-AAVAGGHAVRAARSRPAVVLCTVPYFHSYG----FTCCLRSLGMGESLVCMG-KFDF 264
           LV  ++A       A S   VVL  VP FH       +   L    +G   V  G + D 
Sbjct: 201 LVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATL----VGAKQVLPGPRLDP 256

Query: 265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
             +++  +   V+      P V     D     G+ L ++  +  GG+    S+I ++ +
Sbjct: 257 ASLVELFDGEGVTFTAGV-PTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER 315

Query: 325 LNRTV 329
           +   V
Sbjct: 316 MGVEV 320

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 55/291 (18%), Positives = 102/291 (35%), Gaps = 24/291 (8%)

Query: 37  LLESHA-PPPDTTAL--IDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQN 93
           ++   A   P+  +   ++      + Y  L    K +A +L+        D   LL   
Sbjct: 16  VVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQ-AEGAKPGDRVLLLFAP 74

Query: 94  SVRVPVLYLSLFSLGVV---VSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKY 150
            + +   +L     G +   + P      + +  R +  SKPVI     D   K      
Sbjct: 75  GLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD-- 132

Query: 151 GTVLLDSPEFEPLS--ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQ 208
              L  +P+F  +   A +S++  +        S+  +D A + Y+SG+T   KG +++ 
Sbjct: 133 --ELNTNPKFLKIPAIALESIEL-NRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSH 189

Query: 209 RNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDF--- 264
            NL+  +              +    +P  H  G   C L  +  G   + M  F F   
Sbjct: 190 HNLLDNLNKIFTSFHMNDETIIFSW-LPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQN 248

Query: 265 -GRMLKAVEEFRVSHVVLAPPVVLKMARDGGT---MDGYDLSSIEVVASGG 311
               LK + +++ +    +P                +G DLSS     +G 
Sbjct: 249 PLSWLKHITKYKATISG-SPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 80.7 bits (200), Expect = 6e-17
 Identities = 46/311 (14%), Positives = 93/311 (29%), Gaps = 37/311 (11%)

Query: 38  LESHAP-PPDTTALI---DTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQN 93
           ++ +A   P+  A+I   D  +     + DL       A     K+ + K D   L  ++
Sbjct: 62  VDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFV-KHGIGKGDYVMLTLKS 120

Query: 94  SVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQ-IHLSKP--VIAFATHDTAHKI----- 145
                   L L  LG +  P          +   I  +    ++  A  D   ++     
Sbjct: 121 RYDFWYCMLGLHKLGAIAVPATHMLK-TRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA 179

Query: 146 --PQLKYGTVLLDSPEFEP-LSATDSLDYYDDDEERVRVSVSLS--DPAAILYSSGTTGM 200
               +      +     E  +     L+      ER    VS    D   + +SSGT G 
Sbjct: 180 ECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGF 239

Query: 201 VKGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCT-----VPYFHSYGFTCCLRSLGMGE 254
            K         +  +      +        +                           G 
Sbjct: 240 PKMVEHDNTYPLGHILTAKYWQNV--EDDGLHYTVADSGWG-KCVWGKL---YGQWIAGC 293

Query: 255 SLVC--MGKFDFGRMLKAVEEFRVSHVVLAPPVVLKM-ARDGGTMDGYDLSSIEVVASGG 311
           ++      +F+   ML+   ++ V+    APP + +   ++   +  Y+ S+++     G
Sbjct: 294 AVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKED--LSHYNFSTLKYAVVAG 350

Query: 312 AHLTLSVIRKY 322
             L   V  ++
Sbjct: 351 EPLNPEVFNRF 361

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 80.5 bits (199), Expect = 7e-17
 Identities = 56/337 (16%), Positives = 99/337 (29%), Gaps = 35/337 (10%)

Query: 15  HSLRPSIAFPPETTSVTSYVFSLLESHA-PPPDTTALI-------DTASRHRILYPDLTL 66
           H    S   P  +      + + L + A   P   A                + +  L  
Sbjct: 7   HHHHSSGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYR 66

Query: 67  RIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNP---SCTIPEI 123
           R   +A  L      S  D   + +   +   V +L     G +  P +      T    
Sbjct: 67  RTLNVAQELSRC--GSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERS 124

Query: 124 LRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLS--ATDSLDYYDDDEERVRV 181
              +  S PV    T      + Q      +   P   P S    D LD  D        
Sbjct: 125 DSVLSDSSPVAILTTSSAVDDVVQH-----VARRPGESPPSIIEVDLLDL-DAPNGYTFK 178

Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG-----GHAVRAARSRPAVVLCTVP 236
                  A + Y+SG+T    G +++ +N+                      + ++  +P
Sbjct: 179 EDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238

Query: 237 YFHSYGFTCC-LRSLGMGESLVCMGKFDF----GRMLKAVEEFRVSHVVLAPPVVLKMAR 291
           ++H  G        +  G   V      F     R +  +     +    AP    ++A 
Sbjct: 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSA-APNFAFELAA 297

Query: 292 DGGT---MDGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
              T   M G DL +I  + SG   +  + I+++   
Sbjct: 298 RRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADR 334

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 65.1 bits (158), Expect = 5e-12
 Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 28/188 (14%)

Query: 162 PLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV 221
              +         +   V   +       +  S GTTG  K  +     + A ++   + 
Sbjct: 69  SDISHCLRQEPVANL--VPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG 126

Query: 222 RAARS--RPAVVLCTVPYF-HSYGFTCCLRSL----------------------GMGESL 256
              R        L  +P   H  G     R+L                      G   ++
Sbjct: 127 YQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATV 186

Query: 257 VCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTL 316
                    ++   +    +  +V  PPV+ ++ +    +      S+  +  GG  L L
Sbjct: 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVL-QMKQSLAQITLGGTELNL 245

Query: 317 SVIRKYLQ 324
             I+    
Sbjct: 246 DEIKFIAS 253

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 19/208 (9%)

Query: 130 SKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPA 189
           S+  +AF   +    +       VL    +      +   +    D   +  +   +  A
Sbjct: 125 SRAAMAFVCDNNFDGVELPPETKVLDTKNQ------SFIENLSTQDTSDILNNYPENLDA 178

Query: 190 AILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVL---CTVPYFHSYGF--- 243
            +LY+SG+TG  KG  +++ NL +       +    +  ++ L          S  F   
Sbjct: 179 YLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVH 238

Query: 244 -TCCLRSLGMGESLVCMGK-FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDL 301
                 +   G   V   +      + +   E  V+H  +  P +L        +   D 
Sbjct: 239 IGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGI-VPSLLDQT----GLVPEDA 293

Query: 302 SSIEVVASGGAHLTLSVIRKYLQLNRTV 329
             +  +  GG  +T    + +   +R  
Sbjct: 294 PHLVYLGVGGEKMTPRTQQIWSSSDRVA 321

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 26/203 (12%)

Query: 130 SKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPA 189
           S         +   +  +L Y    L           D    +++       ++  +DPA
Sbjct: 560 SAAACLLTHQEMKEQAAELPYTGTTLF---------IDDQTRFEEQASDPATAIDPNDPA 610

Query: 190 AILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF----TC 245
            I+Y+SGTTG  KG + T  N+   V     +  +       L       +Y F      
Sbjct: 611 YIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQD--TFLS----VSNYAFDAFTFD 664

Query: 246 CLRSLGMGESLVCM---GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLS 302
              S+     L+        D  R+   + +  V+ +     +   +   G       + 
Sbjct: 665 FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED----WMK 720

Query: 303 SIEVVASGGAHLTLSVIRKYLQL 325
            +  +  GG   ++  +RK L++
Sbjct: 721 GLRCILFGGERASVPHVRKALRI 743

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 28/208 (13%)

Query: 130 SKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPA 189
           S+  +        H I  +++   +            +       +   + V    +D A
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEI---------FEEDTIKIREGTNLHVPSKSTDLA 185

Query: 190 AILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF----TC 245
            ++Y+SGTTG  KG +L  + +              +    +      F S  F      
Sbjct: 186 YVIYTSGTTGNPKGTMLEHKGISNLKV-FFENSLNVTEKDRIGQ----FASISFDASVWE 240

Query: 246 CLRSLGMGESLVCM---GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLS 302
              +L  G SL  +      DF +  + + +  ++ + L PP  +        +D   + 
Sbjct: 241 MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITL-PPTYVVH------LDPERIL 293

Query: 303 SIEVVASGGAHLTLSVIRKYLQLNRTVN 330
           SI+ + + G+  + S++ K+ +    +N
Sbjct: 294 SIQTLITAGSATSPSLVNKWKEKVTYIN 321

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 41/204 (20%), Positives = 67/204 (32%), Gaps = 24/204 (11%)

Query: 130 SKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPA 189
           +KP +  A  +    I       V L           +S    +   ER   SV   D  
Sbjct: 100 AKPSLIIAIEEFPLTIEG--ISLVSLSEI--------ESAKLAEMPYERT-HSVKGDDNY 148

Query: 190 AILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPA-VVLCTVPYFHSYGF----T 244
            I+++SGTTG  KG  ++  NL++         A        +L        Y F     
Sbjct: 149 YIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLA----QPPYSFDLSVM 204

Query: 245 CCLRSLGMGESLVCM---GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDL 301
               +L +G +L  +      DF ++   + +  V       P    MA          +
Sbjct: 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTS-TPSFADMAMLSDDFCQAKM 263

Query: 302 SSIEVVASGGAHLTLSVIRKYLQL 325
            ++      G  LT+S  RK  + 
Sbjct: 264 PALTHFYFDGEELTVSTARKLFER 287

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 49.4 bits (119), Expect = 8e-07
 Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 20/193 (10%)

Query: 140 DTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTG 199
            TA  +  L    V  D+ +       D    +  +      +V   +   I+Y+SG+TG
Sbjct: 105 ATAVTVTDLPVRIVSEDNLK-------DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTG 157

Query: 200 MVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF----TCCLRSLGMGES 255
             KG  +T   LV+                V L        + F         SL  G +
Sbjct: 158 NPKGVQITYNCLVSFTKWAVE-DFNLQTGQVFLN----QAPFSFDLSVMDIYPSLVTGGT 212

Query: 256 LVCM---GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA 312
           L  +          +  ++E+  +       P   +M     +     L +++     G 
Sbjct: 213 LWAIDKDMIARPKDLFASLEQSDIQVWTS-TPSFAEMCLMEASFSESMLPNMKTFLFCGE 271

Query: 313 HLTLSVIRKYLQL 325
            L   V RK ++ 
Sbjct: 272 VLPNEVARKLIER 284

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 24/203 (11%)

Query: 130 SKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPA 189
           S   +       +      +  TV  +                +         V   +  
Sbjct: 98  SGAELLIHAAGLSIDAVGQQIQTVSAEEL-----------LENEGGSVSQDQWVKEHETF 146

Query: 190 AILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF----TC 245
            I+Y+SG+TG  KG  ++  NL +      A          +         + F      
Sbjct: 147 YIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLN-----QAPFSFDLSVMD 201

Query: 246 CLRSLGMGESLVC---MGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLS 302
               L  G +L C           + + +++  ++      P  ++M           L 
Sbjct: 202 LYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTS-TPSFVQMCLMDPGFSQDLLP 260

Query: 303 SIEVVASGGAHLTLSVIRKYLQL 325
             +     G  L +SV +  L+ 
Sbjct: 261 HADTFMFCGEVLPVSVAKALLER 283

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 16/81 (19%), Positives = 20/81 (24%), Gaps = 6/81 (7%)

Query: 163 LSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVR 222
           L                R   +    A I +SSGTTG  K    T   +     G   + 
Sbjct: 141 LPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLA 200

Query: 223 AARSRPAVVLCTVPYFHSYGF 243
            A       L          F
Sbjct: 201 FAPQM--RFLV----NSPLSF 215

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.92
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.88
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.87
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.87
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.87
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.78
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.09
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	91.9
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	85.12
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	82.31

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2.7e-47  Score=362.83  Aligned_cols=316  Identities=28%  Similarity=0.424  Sum_probs=267.2

Q ss_pred             ceeeccCCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 045351           11 TKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLL   90 (349)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~   90 (349)
                      ..++.++.+..++|. ++|+.++|.+++  .++ |+++|+++.++++++||+||.++++++|+.|++ .|+++||+|+++
T Consensus         6 ~~i~~~~~~~~~~p~-~~~l~~~l~~~a--~~~-p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~   80 (536)
T 3ni2_A            6 EFIFRSKLPDIYIPK-NLPLHSYVLENL--SNH-SSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVIMLF   80 (536)
T ss_dssp             CCCBCCSSCCCCCCS-SCCHHHHHTTTG--GGS-TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEE
T ss_pred             ceEEecCCCCCCCCC-CCcHHHHHHHHh--hcC-CCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEE
Confidence            456777778888775 589999999999  999 999999997668999999999999999999999 999999999999


Q ss_pred             cCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----cCcceEEeCCCC-----cc
Q 045351           91 SQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----LKYGTVLLDSPE-----FE  161 (349)
Q Consensus        91 ~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~-----~~  161 (349)
                      ++|++++++++|||+++|++++|+++..+.+++.++++.+++++++++....+.+.+    ...+++.++...     +.
T Consensus        81 ~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (536)
T 3ni2_A           81 LPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFS  160 (536)
T ss_dssp             CCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETH
T ss_pred             cCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHH
Confidence            999999999999999999999999999999999999999999999999876554433    233455544321     11


Q ss_pred             ccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc----cccCCCCCcEEEEecCh
Q 045351          162 PLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA----VRAARSRPAVVLCTVPY  237 (349)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~l~~~p~  237 (349)
                      ++...       ...........++++++|+|||||||.||||++||+++...+.....    .+. +.+++++++.+|+
T Consensus       161 ~~~~~-------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~  232 (536)
T 3ni2_A          161 ELTQA-------DENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLY-FHSEDVILCVLPM  232 (536)
T ss_dssp             HHHTS-------CGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSC-CCTTCCEEECSCT
T ss_pred             HHhhc-------cccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcccccc-CCCCCEEEEecCh
Confidence            11111       11112223567899999999999999999999999999988766443    334 6789999999999


Q ss_pred             hhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCH
Q 045351          238 FHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTL  316 (349)
Q Consensus       238 ~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~  316 (349)
                      +|.+|+ ..++.++..|+++++.+++++..+++.++++++|++.++|+++..|.+.+ .....++++||.+++||+++++
T Consensus       233 ~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~l~~lr~i~~gGe~l~~  311 (536)
T 3ni2_A          233 FHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP-DLDKHDLSSLRMIKSGGAPLGK  311 (536)
T ss_dssp             TSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-CGGGSCCTTCCEEEEESSCCCH
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-ccccCCCccceEEEECCCCCCH
Confidence            999999 56788999999999999999999999999999999999999999999987 7777889999999999999999


Q ss_pred             HHHHHHHHHcCCc---ccccccccCce
Q 045351          317 SVIRKYLQLNRTV---NRQLCLEFGAP  340 (349)
Q Consensus       317 ~~~~~~~~~~~~~---~~~~~~~~G~~  340 (349)
                      ++.+++.+.+|+.   +.|+.||.|..
T Consensus       312 ~~~~~~~~~~~~~~l~~~YG~TE~~~~  338 (536)
T 3ni2_A          312 ELEDTVRAKFPQARLGQGYGMTEAGPV  338 (536)
T ss_dssp             HHHHHHHHHCTTSEEEEEEECGGGSSE
T ss_pred             HHHHHHHHHCCCCCccccccccccchh
Confidence            9999999999654   34567777643

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=6.2e-47  Score=361.42  Aligned_cols=326  Identities=21%  Similarity=0.277  Sum_probs=261.7

Q ss_pred             ccceeeccCCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEE---eCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045351            9 SETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALI---DTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYD   85 (349)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~---~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd   85 (349)
                      .+..++.++.+..+++.  .|+.++|.+.+  +++ |+++|++   +...++++||+||.++++++|+.|++ .|+++||
T Consensus         3 ~~~~~~~~~~~~~~~~~--~tl~~~l~~~a--~~~-p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd   76 (550)
T 3rix_A            3 DAKNIKKGPAPFYPLED--GTAGEQLHKAM--KRY-ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNH   76 (550)
T ss_dssp             CGGGSEECCCCSSCCCC--SCHHHHHHHHH--HHH-HTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTC
T ss_pred             cccceeeCCCCCCCccc--CCHHHHHHHHH--HhC-CCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence            45567778888888887  99999999999  889 9999875   55557899999999999999999998 9999999


Q ss_pred             EEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc------CcceEEeCCCC
Q 045351           86 VAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL------KYGTVLLDSPE  159 (349)
Q Consensus        86 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~  159 (349)
                      +|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++|++.+..+.+...      ...++.++...
T Consensus        77 ~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (550)
T 3rix_A           77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT  156 (550)
T ss_dssp             EEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSS
T ss_pred             EEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCc
Confidence            999999999999999999999999999999999999999999999999999998765544321      12233333221


Q ss_pred             c-------cccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcc---ccCCCCCc
Q 045351          160 F-------EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV---RAARSRPA  229 (349)
Q Consensus       160 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~  229 (349)
                      .       .++.....................++++++|+|||||||.||||++||+++...+......   .+ +.+++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~-~~~~~  235 (550)
T 3rix_A          157 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ-IIPDT  235 (550)
T ss_dssp             CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCC-CCTTC
T ss_pred             cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhcccc-CCCCc
Confidence            0       1111100000000000111112345789999999999999999999999999887776554   34 67899


Q ss_pred             EEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehc
Q 045351          230 VVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVAS  309 (349)
Q Consensus       230 ~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~  309 (349)
                      ++++.+|++|.+|+..++.+++.|+++++.+++++..+++.|+++++|++.++|+++..|.+.. .....++++||.+++
T Consensus       236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~l~~lr~i~~  314 (550)
T 3rix_A          236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST-LIDKYDLSNLHEIAS  314 (550)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-GGGGSCCTTCCEEEE
T ss_pred             EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-cccccCcccccEEEE
Confidence            9999999999999988889999999999999999999999999999999999999999999987 667788999999999


Q ss_pred             cCCCCCHHHHHHHHHHcCCc---ccccccccCceee
Q 045351          310 GGAHLTLSVIRKYLQLNRTV---NRQLCLEFGAPII  342 (349)
Q Consensus       310 gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~~~i  342 (349)
                      ||+++++++.+++.+.++..   +.|+.||.|..+.
T Consensus       315 gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~  350 (550)
T 3rix_A          315 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL  350 (550)
T ss_dssp             CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEE
T ss_pred             ecCCCCHHHHHHHHHHcCCCccccccCcCcccccee
Confidence            99999999999999999643   5577888875443

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=1.5e-46  Score=358.68  Aligned_cols=315  Identities=20%  Similarity=0.237  Sum_probs=258.4

Q ss_pred             eeeccCCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCC------ceeeHHHHHHHHHHHHHHHhhhcCCCCCC
Q 045351           12 KIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASR------HRILYPDLTLRIKTLAYSLKTKYKLSKYD   85 (349)
Q Consensus        12 ~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd   85 (349)
                      ..+.+..|....|.  +|+.++|..++  +++ |+++|+++.+.+      +++||+||.++++++|+.|.+ .|+++||
T Consensus         5 ~~~~~~~p~~~~~~--~~l~~~l~~~a--~~~-p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd   78 (549)
T 3g7s_A            5 LKYKIGFPSLYYPK--ISLADRIDAAA--EKF-GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKGE   78 (549)
T ss_dssp             CSSCCCCCCCCCCC--CCTTHHHHHHH--HHH-TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTTC
T ss_pred             eeeccCCCCCCcCC--CCHHHHHHHHH--HhC-CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCCC
Confidence            34556666666666  99999999999  999 999999987321      899999999999999999998 9999999


Q ss_pred             EEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----cCcc-eEEeCCC--
Q 045351           86 VAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----LKYG-TVLLDSP--  158 (349)
Q Consensus        86 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~-~~~~~~~--  158 (349)
                      +|+|+++|+++++++++||+++|++++|+++..+.+++.++++.+++++++++....+.+..    .... ++..+..  
T Consensus        79 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (549)
T 3g7s_A           79 HVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVN  158 (549)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSS
T ss_pred             EEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCc
Confidence            99999999999999999999999999999999999999999999999999999876554432    2222 2233211  


Q ss_pred             CccccccccCCCCCCCCccccccccC-CCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecCh
Q 045351          159 EFEPLSATDSLDYYDDDEERVRVSVS-LSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPY  237 (349)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~  237 (349)
                      .+.+......       ......... ++++++|+|||||||.||||++||+++...+......++ +.+++++++.+|+
T Consensus       159 ~~~~~~~~~~-------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~~~~~p~  230 (549)
T 3g7s_A          159 SLSEVMDSGS-------EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-LSHMDTIVGCMPM  230 (549)
T ss_dssp             CHHHHHHHSC-------SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHC-CCTTCEEECCSCT
T ss_pred             CHHHHHhcCc-------cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcC-CCCCCEEEEeCcH
Confidence            1222221111       111112233 389999999999999999999999999999988888887 7899999999999


Q ss_pred             hhHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCC--CCCCcchheehccCCCCC
Q 045351          238 FHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMD--GYDLSSIEVVASGGAHLT  315 (349)
Q Consensus       238 ~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~--~~~l~~lr~i~~gG~~l~  315 (349)
                      +|.+++..++.++..|+++++.+.+++..+++.|+++++|++.++|.++..|.+.. ...  ..+++++|.+++||++++
T Consensus       231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~~~~gg~~l~  309 (549)
T 3g7s_A          231 FHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTL-ESSNKTYDWSYLKVFATGAWPVA  309 (549)
T ss_dssp             TSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHH-HHSCCCCCCTTCCEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhh-hhhcccCCccceeEEEeCCccCC
Confidence            99999977889999999999999999999999999999999999999999998864 332  367899999999999999


Q ss_pred             HHHHHHHHHH----cCC-----cccccccccCcee
Q 045351          316 LSVIRKYLQL----NRT-----VNRQLCLEFGAPI  341 (349)
Q Consensus       316 ~~~~~~~~~~----~~~-----~~~~~~~~~G~~~  341 (349)
                      +++.+++.+.    ++.     .+.|+.||.|..+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  344 (549)
T 3g7s_A          310 PALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV  344 (549)
T ss_dssp             HHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEE
T ss_pred             HHHHHHHHHHHHhhcCCccccccceEeccccchhh
Confidence            9999999998    542     2345667766433

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.3e-45  Score=372.11  Aligned_cols=325  Identities=28%  Similarity=0.388  Sum_probs=267.0

Q ss_pred             CCCccccceeeccCCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCC
Q 045351            4 KNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSK   83 (349)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~   83 (349)
                      .+........+.+..+...+|. .+|+.++|.+++  .++ |+++|+++..+++++||+||.++++++|+.|++ .|+++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~p~-~~tl~~~l~~~a--~~~-pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~  112 (979)
T 3tsy_A           38 QSNNNNSDVIFRSKLPDIYIPN-HLSLHDYIFQNI--SEF-ATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LGVNQ  112 (979)
T ss_dssp             -------CCCBCCSSCCCCCCT-TSCHHHHHTTTG--GGT-TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCT
T ss_pred             cccCCCCCceeecCCCCCCCCC-CCCHHHHHHHHH--HhC-CCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cCCCC
Confidence            3444455667778888777775 489999999999  999 999999997668999999999999999999999 99999


Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----cCcceEEeCCCC
Q 045351           84 YDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----LKYGTVLLDSPE  159 (349)
Q Consensus        84 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~  159 (349)
                      ||+|+|+++|++++++++|||+++|++++|++|..+.+++.++++.++++++|++....+.+..    ....++.++...
T Consensus       113 gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (979)
T 3tsy_A          113 NDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNE  192 (979)
T ss_dssp             TCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCT
T ss_pred             cCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcc
Confidence            9999999999999999999999999999999999999999999999999999999877665543    233344444321


Q ss_pred             ----------ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc----cccCC
Q 045351          160 ----------FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA----VRAAR  225 (349)
Q Consensus       160 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~  225 (349)
                                +.++......    ...........++++++|+|||||||.||||+++|+++...+.....    .+. +
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~-~  267 (979)
T 3tsy_A          193 SVPIPEGCLRFTELTQSTTE----ASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-F  267 (979)
T ss_dssp             TSCCCTTEEEGGGTSSCCSG----GGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSC-C
T ss_pred             cccCCcccccHHHHhhcccc----ccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhccccc-C
Confidence                      1111111000    00111223567899999999999999999999999999988766543    334 6


Q ss_pred             CCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcch
Q 045351          226 SRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSI  304 (349)
Q Consensus       226 ~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~l  304 (349)
                      .+++++++.+|++|.+++ ..++.++..|+++++.+++++..+++.|+++++|++.++|+++..|.+.. .....++++|
T Consensus       268 ~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~l~~l  346 (979)
T 3tsy_A          268 HSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS-ETEKYDLSSI  346 (979)
T ss_dssp             CSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCG-GGGTSCCTTC
T ss_pred             CCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCc-cccCCCccce
Confidence            789999999999999999 56788999999999999999999999999999999999999999999987 6777789999


Q ss_pred             heehccCCCCCHHHHHHHHHHcCCc---ccccccccCc
Q 045351          305 EVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       305 r~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                      |.+++||+++++++.+++.+.||+.   +.|+.||.|.
T Consensus       347 r~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~  384 (979)
T 3tsy_A          347 RVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP  384 (979)
T ss_dssp             CEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhH
Confidence            9999999999999999999999654   3356677654

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=6.5e-45  Score=347.12  Aligned_cols=316  Identities=22%  Similarity=0.273  Sum_probs=256.8

Q ss_pred             ceeeccCCCCCCCCCCCcchhh-hhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEE
Q 045351           11 TKIFHSLRPSIAFPPETTSVTS-YVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFL   89 (349)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~tl~~-~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i   89 (349)
                      .+.+.+..+....|. ..|+.+ ++..++  .++  +++|+++...++++||+||.++++++|+.|++ .|+++||+|++
T Consensus         9 ~~~~~~~~~~~~~p~-~~~l~~~~l~~~~--~~~--~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i   82 (548)
T 2d1s_A            9 NIVVGPKPFYPIEEG-SAGTQLRKYMERY--AKL--GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGRIAL   82 (548)
T ss_dssp             TSEECCCCSSCCCSS-CHHHHHHHHHHHH--HHH--TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEE
T ss_pred             ceEecCCCCCCCCCC-cCcHHHHHHHhhh--ccc--CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEE
Confidence            356677766666654 468999 888888  655  89999985457899999999999999999998 99999999999


Q ss_pred             EcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc------CcceEEeCCCC----
Q 045351           90 LSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL------KYGTVLLDSPE----  159 (349)
Q Consensus        90 ~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~----  159 (349)
                      +++|+++++++++||+++|++++|+++..+.+++.++++.++++++|++....+.+...      ...++.++...    
T Consensus        83 ~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (548)
T 2d1s_A           83 CSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRG  162 (548)
T ss_dssp             ECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTT
T ss_pred             EeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccc
Confidence            99999999999999999999999999999999999999999999999998765443321      12344444321    


Q ss_pred             ---ccccccccCCCCCCCCcccccccc------CCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcc---ccCCCC
Q 045351          160 ---FEPLSATDSLDYYDDDEERVRVSV------SLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV---RAARSR  227 (349)
Q Consensus       160 ---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~  227 (349)
                         +.++.....      .........      .++++++|+|||||||.||||++||+++...+......   ++ +.+
T Consensus       163 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~-~~~  235 (548)
T 2d1s_A          163 YQCLDTFIKRNT------PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQ-VSP  235 (548)
T ss_dssp             BCBHHHHHHHTS------CTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCC-CCT
T ss_pred             cccHHHHHhcCc------cccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccC-CCc
Confidence               111111100      000001111      23899999999999999999999999999988776655   45 678


Q ss_pred             CcEEEEecChhhHhhHHH-HHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchhe
Q 045351          228 PAVVLCTVPYFHSYGFTC-CLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEV  306 (349)
Q Consensus       228 ~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~  306 (349)
                      ++++++..|++|.+|+.. ++.++ .|+++++.+++++..+++.|+++++|+++++|++++.|.+.. .....++++||.
T Consensus       236 ~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~l~~lr~  313 (548)
T 2d1s_A          236 GTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE-LLNKYDLSNLVE  313 (548)
T ss_dssp             TCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS-CGGGSCCTTCCE
T ss_pred             cceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc-ccccccccceeE
Confidence            999999999999999955 55666 999999999999999999999999999999999999999886 666678899999


Q ss_pred             ehccCCCCCHHHHHHHHHHcCC---cccccccccCcee
Q 045351          307 VASGGAHLTLSVIRKYLQLNRT---VNRQLCLEFGAPI  341 (349)
Q Consensus       307 i~~gG~~l~~~~~~~~~~~~~~---~~~~~~~~~G~~~  341 (349)
                      +++||+++++++.+++.+.||+   .+.|+.||.|...
T Consensus       314 i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  351 (548)
T 2d1s_A          314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI  351 (548)
T ss_dssp             EEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEE
T ss_pred             EEEcCccCCHHHHHHHHHHcCCCceeecccccccccee
Confidence            9999999999999999999864   3446778876543

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=5e-46  Score=352.53  Aligned_cols=300  Identities=21%  Similarity=0.227  Sum_probs=247.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.++|..++  +.+ |+++|+++.+.++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++
T Consensus        16 ~~l~~~l~~~a--~~~-p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~   91 (517)
T 3r44_A           16 KNIGWMLRQRA--TVS-PRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAAKL   91 (517)
T ss_dssp             GCHHHHHHHHH--HHS-TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHH--HhC-CCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence            79999999999  999 999999997444599999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccC------cceEEe-CCCCccccccccCCCCCCCCccccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK------YGTVLL-DSPEFEPLSATDSLDYYDDDEERVR  180 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  180 (349)
                      |++++|+++..+.+++.++++.+++++++++....+.+....      ..++.. ....+.+....       .......
T Consensus        92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  164 (517)
T 3r44_A           92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRS-------AAADEPA  164 (517)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHH-------CCCCCCC
T ss_pred             CcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhc-------cCcCCCC
Confidence            999999999999999999999999999999876554433210      011111 10011111111       1111122


Q ss_pred             cccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC
Q 045351          181 VSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG  260 (349)
Q Consensus       181 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~  260 (349)
                      ....++++++|+|||||||.||||++||+++...+......++ +..++++++.+|++|.+|+...+.+++.|+++++.+
T Consensus       165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~  243 (517)
T 3r44_A          165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMP  243 (517)
T ss_dssp             CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSC-CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred             CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcC-CCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeC
Confidence            3567899999999999999999999999999999988888887 789999999999999999976666666999999999


Q ss_pred             CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc-CCcccccccccCc
Q 045351          261 KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLCLEFGA  339 (349)
Q Consensus       261 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~~~~G~  339 (349)
                      .+++..+++.++++++|++.++|+++..|.+.+ .....++++||.+++||+++++++.+.+.+.. +..+.|+.||.+.
T Consensus       244 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~  322 (517)
T 3r44_A          244 QFDATKVWSLIVEERVCIGGAVPAILNFMRQVP-EFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCG  322 (517)
T ss_dssp             SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSH-HHHHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTT
T ss_pred             CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc-ccccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeeccccccc
Confidence            999999999999999999999999999999876 55667789999999999999999999998862 2334466777654


Q ss_pred             e
Q 045351          340 P  340 (349)
Q Consensus       340 ~  340 (349)
                      .
T Consensus       323 ~  323 (517)
T 3r44_A          323 G  323 (517)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.2e-45  Score=347.91  Aligned_cols=296  Identities=16%  Similarity=0.136  Sum_probs=247.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      ||+.+.|..++  +++ |+++|+++.  ++++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||+++
T Consensus         1 m~l~~~l~~~a--~~~-p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~~   74 (512)
T 3fce_A            1 MKLLEQIEKWA--AET-PDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVKA   74 (512)
T ss_dssp             CCHHHHHHHHH--HHS-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHH--HHC-CCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            58999999999  999 999999997  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |++++|+++..+.+++.++++.+++++++++......  .....+.  ....+........     ...........+++
T Consensus        75 G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~d  145 (512)
T 3fce_A           75 GHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT--DLPVRIV--SEDNLKDIFFTHK-----GNTPNPEHAVKGDE  145 (512)
T ss_dssp             TCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--CCSSEEE--ETHHHHHHHHHTT-----TCCCCGGGSCCTTS
T ss_pred             CCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc--cccccee--chhhhhhhccccc-----ccCCCccccCCCCC
Confidence            9999999999999999999999999999997543211  1111111  1111111111100     11112233567899


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCC---CCH
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGK---FDF  264 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~  264 (349)
                      +++|+|||||||.||||++||+++.+.+......++ +.+++++++..|++|.+++..++.+++.|+++++.+.   +++
T Consensus       146 ~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  224 (512)
T 3fce_A          146 NFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN-LQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARP  224 (512)
T ss_dssp             EEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTT-CCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSH
T ss_pred             eEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcC-CCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCH
Confidence            999999999999999999999999999988888887 7899999999999999999889999999999999976   699


Q ss_pred             HHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccCce
Q 045351          265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGAP  340 (349)
Q Consensus       265 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~~  340 (349)
                      ..+++.++++++|++.++|+++..++... .....+++++|.+++||+++++++.+++.+.|++.   +.|++||.|..
T Consensus       225 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~  302 (512)
T 3fce_A          225 KDLFASLEQSDIQVWTSTPSFAEMCLMEA-SFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVA  302 (512)
T ss_dssp             HHHHHHHHHHCCCEEEECHHHHHHHTTST-TCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSC
T ss_pred             HHHHHHHHHcCCcEEEecHHHHHHHHhhc-cccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhh
Confidence            99999999999999999999999999887 66777899999999999999999999999999654   34566776543

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=9.6e-45  Score=345.39  Aligned_cols=294  Identities=20%  Similarity=0.203  Sum_probs=247.7

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.++|..++  +++ |+++|+++.  ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++
T Consensus        25 ~tl~~~l~~~a--~~~-p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~   98 (539)
T 1mdb_A           25 ETFGDLLRDRA--AKY-GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRL   98 (539)
T ss_dssp             CCHHHHHHHHH--HHH-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH--HHC-CCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence            79999999999  889 999999997  7899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccc--------cccc-c-Ccc-eEEeCC-CCccccccccCCCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH--------KIPQ-L-KYG-TVLLDS-PEFEPLSATDSLDYYDDD  175 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~--------~~~~-~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  175 (349)
                      |++++|+++..+.+++.++++.++++++++++....        .+.. . ... ++..+. ..+.++....       .
T Consensus        99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  171 (539)
T 1mdb_A           99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLH-------T  171 (539)
T ss_dssp             TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCC-------C
T ss_pred             CeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcc-------c
Confidence            999999999999999999999999999999875321        1110 0 112 222222 1222222110       1


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHH--HHHhhhhcC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT--CCLRSLGMG  253 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~--~~~~~l~~G  253 (349)
                      .........++++++|+|||||||.||||++||+++.+.+......++ +.+++++++.+|++|.+++.  .++.+|+.|
T Consensus       172 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G  250 (539)
T 1mdb_A          172 EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHSTVYLAALPMAHNYPLSSPGVLGVLYAG  250 (539)
T ss_dssp             CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT-CCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred             cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhC-CCCCCEEEEeecccccchhhHHHHHHHHHhC
Confidence            011123456789999999999999999999999999999888777777 78999999999999999994  689999999


Q ss_pred             CEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--ccc
Q 045351          254 ESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNR  331 (349)
Q Consensus       254 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~  331 (349)
                      +++++.+.+++..+++.|+++++|++.++|+++..|++.. .....++++||.+++||+++++++.+++.+.++.  .+.
T Consensus       251 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~  329 (539)
T 1mdb_A          251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAA-SSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQV  329 (539)
T ss_dssp             CEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH-HHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEE
T ss_pred             CEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc-cccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEE
Confidence            9999999999999999999999999999999999998875 5556678999999999999999999999998853  244


Q ss_pred             ccccc
Q 045351          332 QLCLE  336 (349)
Q Consensus       332 ~~~~~  336 (349)
                      |+.+|
T Consensus       330 YG~TE  334 (539)
T 1mdb_A          330 FGMAE  334 (539)
T ss_dssp             EECTT
T ss_pred             EcCCC
Confidence            55566

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=8e-45  Score=343.40  Aligned_cols=298  Identities=23%  Similarity=0.250  Sum_probs=242.3

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +|+.++|..++  +++ |+++|+++...++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++
T Consensus         2 ~tl~~~l~~~a--~~~-p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~   77 (504)
T 1t5h_X            2 QTVNEMLRRAA--TRA-PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRL   77 (504)
T ss_dssp             CCHHHHHHHHH--HHC-TTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHH--HhC-CCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence            57999999999  889 999999987557899999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEE--cCcccccc-ccc-CcceEEeCCCCccccccccCCCCCCCCcccccccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFA--THDTAHKI-PQL-KYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSV  183 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (349)
                      |++++|+++..+.+++.++++.++++++++  +....+.+ ... ..+++.     +.++...... .. ..........
T Consensus        78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~-~~~~~~~~~~  150 (504)
T 1t5h_X           78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-----LGDLVRDGEP-YS-YGPPIEDPQR  150 (504)
T ss_dssp             TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE-----GGGTEETTEE-CC-CSCCCCCCCC
T ss_pred             CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE-----ecchhhcCcc-cc-cCCccCCCCC
Confidence            999999999999999999999999999999  66544333 211 112221     2222211100 00 0000111345


Q ss_pred             CCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCC--CCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcC
Q 045351          184 SLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAAR--SRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMG  260 (349)
Q Consensus       184 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~  260 (349)
                      .++++++|+|||||||.||||++||+++.+.+......++ +  .+++++++.+|++|.+|+ ..++.+++.|+++++.+
T Consensus       151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  229 (504)
T 1t5h_X          151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG-LRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE  229 (504)
T ss_dssp             CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTC-CCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS
T ss_pred             CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhC-CCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC
Confidence            6789999999999999999999999999998887766666 5  788999999999999998 67889999999999999


Q ss_pred             CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCC-CCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--ccccccccc
Q 045351          261 KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGG-TMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEF  337 (349)
Q Consensus       261 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~-~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~  337 (349)
                      .+++..+++.|+++++|+++++|++++.|.+... .....++++||.+++||+++++++.+++.+.++.  .+.|+.||.
T Consensus       230 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~  309 (504)
T 1t5h_X          230 EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEA  309 (504)
T ss_dssp             SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTT
T ss_pred             CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccc
Confidence            9999999999999999999999999999987640 1345678999999999999999999999999863  344556665

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=8.1e-45  Score=346.30  Aligned_cols=297  Identities=18%  Similarity=0.176  Sum_probs=248.4

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.++|..++  +++ |+++|+++.  ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++
T Consensus        30 ~tl~~~l~~~a--~~~-p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~  103 (544)
T 3o83_A           30 QPLTRILTVGV--QSH-PHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLKA  103 (544)
T ss_dssp             CCTTHHHHHHH--HHC-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH--HhC-CCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            78999999999  999 999999997  8999999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc--------ccc--cCcc-eEEeCCCC----ccccccccCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK--------IPQ--LKYG-TVLLDSPE----FEPLSATDSLDYY  172 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~--------~~~--~~~~-~~~~~~~~----~~~~~~~~~~~~~  172 (349)
                      |++++|+++..+.+++.++++.+++++++++......        +..  .... ++..+...    +.++....     
T Consensus       104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  178 (544)
T 3o83_A          104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETP-----  178 (544)
T ss_dssp             TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSC-----
T ss_pred             CcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhcc-----
Confidence            9999999999999999999999999999998764311        111  1111 22222211    11111110     


Q ss_pred             CCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHH--HHHhhh
Q 045351          173 DDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT--CCLRSL  250 (349)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~--~~~~~l  250 (349)
                       ...........++++++|+|||||||.||||++||+++...+......++ +.+++++++.+|++|.+++.  .++.++
T Consensus       179 -~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~~~~~~~~~~~l  256 (544)
T 3o83_A          179 -AETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICG-LNSNTRLLCALPAPHNFMLSSPGALGVL  256 (544)
T ss_dssp             -CSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTT-CCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred             -cccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhC-CCCCCeEEEecCcceEeecchHHHHHHH
Confidence             01111113456789999999999999999999999999999998888887 79999999999999999984  688999


Q ss_pred             hcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--
Q 045351          251 GMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--  328 (349)
Q Consensus       251 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--  328 (349)
                      ..|+++++.+.+++..+++.|+++++|++.++|+++..|++.. .....++++||.+++||+++++++.+++.+.++.  
T Consensus       257 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~  335 (544)
T 3o83_A          257 HAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKA-AQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKL  335 (544)
T ss_dssp             HTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHH-TTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEE
T ss_pred             HcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhch-hhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcE
Confidence            9999999999999999999999999999999999999999886 6666778999999999999999999999998853  


Q ss_pred             cccccccccC
Q 045351          329 VNRQLCLEFG  338 (349)
Q Consensus       329 ~~~~~~~~~G  338 (349)
                      .+.|+++|.+
T Consensus       336 ~~~YG~TE~~  345 (544)
T 3o83_A          336 QQVFGMAEGL  345 (544)
T ss_dssp             EEEEECTTSC
T ss_pred             Eeeecccccc
Confidence            3445666654

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=2.1e-45  Score=345.49  Aligned_cols=295  Identities=15%  Similarity=0.155  Sum_probs=237.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC-----CC--ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA-----SR--HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVL  100 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~-----~~--~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~  100 (349)
                      +|+.++|..++  +++ ||++|+++.+     ++  +++||+||.++++++|+.|++ .|+ +||+|+|+++|+++++++
T Consensus        24 ~tl~~~l~~~a--~~~-pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~~   98 (480)
T 3t5a_A           24 RSLPAALRACA--RLQ-PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVVA   98 (480)
T ss_dssp             CCHHHHHHHHH--HHS-TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHHH
T ss_pred             ccHHHHHHHHH--HhC-CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHHH
Confidence            89999999999  999 9999999752     22  799999999999999999998 896 999999999999999999


Q ss_pred             HHHHHhcCCeEecCCC---CCCHHHHHHHHhhcCCeEEEEcCcccccccccCc--------ceEEeCCCCccccccccCC
Q 045351          101 YLSLFSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKY--------GTVLLDSPEFEPLSATDSL  169 (349)
Q Consensus       101 ~lA~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  169 (349)
                      +|||+++|++++|+++   ..+.+++.++++.++++++|++....+.+.....        .++..+..     ...   
T Consensus        99 ~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---  170 (480)
T 3t5a_A           99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL-----DLD---  170 (480)
T ss_dssp             HHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS-----CTT---
T ss_pred             HHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc-----ccc---
Confidence            9999999999999999   7789999999999999999999876554433111        12222110     000   


Q ss_pred             CCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCC------CcEEEEecChhhHhhH
Q 045351          170 DYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSR------PAVVLCTVPYFHSYGF  243 (349)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~g~  243 (349)
                          ...........++++++|+|||||||.||||++||+++...+......+. +..      ++++++.+|++|.+|+
T Consensus       171 ----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~g~  245 (480)
T 3t5a_A          171 ----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYF-ADTDGIPPPNSALVSWLPFYHDMGL  245 (480)
T ss_dssp             ----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHC-TTTTTCCCTTEEEEECCCTTSTTHH
T ss_pred             ----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhc-cccccCCCCCCeEEEeCCCcCccHH
Confidence                11112233567789999999999999999999999999998888777666 455      8999999999999998


Q ss_pred             -HHHHhhhhcCCEEEEcCCC----CHHHHHHHHHhhcccEEEechHHHHHHHhc----CCCCCCCCCcchheehccCCCC
Q 045351          244 -TCCLRSLGMGESLVCMGKF----DFGRMLKAVEEFRVSHVVLAPPVVLKMARD----GGTMDGYDLSSIEVVASGGAHL  314 (349)
Q Consensus       244 -~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~----~~~~~~~~l~~lr~i~~gG~~l  314 (349)
                       ..++.+|+.|+++++.+++    ++..+++.++++++| +..+|.++..++..    . .....++++||.+++||+++
T Consensus       246 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~-~~~~~~l~~lr~i~~gG~~l  323 (480)
T 3t5a_A          246 VIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD-DMAGRDLGNILTILSGSERV  323 (480)
T ss_dssp             HHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG-GGTTCCCTTCCEEEECCTTC
T ss_pred             HHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc-cccccchhhhheeeecCCcC
Confidence             6788999999999999754    999999999999999 88899988888764    2 34567789999999999999


Q ss_pred             CHHHHHHHHHHcC--------CcccccccccCceee
Q 045351          315 TLSVIRKYLQLNR--------TVNRQLCLEFGAPII  342 (349)
Q Consensus       315 ~~~~~~~~~~~~~--------~~~~~~~~~~G~~~i  342 (349)
                      ++++++++.+.++        ..+.|+.||.+..+.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  359 (480)
T 3t5a_A          324 QAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA  359 (480)
T ss_dssp             CHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred             CHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence            9999999999984        233456677665443

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=7.4e-44  Score=343.64  Aligned_cols=285  Identities=16%  Similarity=0.057  Sum_probs=240.5

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      ..|+.+.|.+++  .++ ||++|+++.  ++++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||++
T Consensus        26 ~~tl~~~~~~~a--~~~-Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lailk   99 (620)
T 4dg8_A           26 HPTVVARFSEMA--ALH-PHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAILL   99 (620)
T ss_dssp             SCCHHHHHHHHH--HHC-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH--HhC-CCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            379999999999  999 999999997  7899999999999999999999 9999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      +|++++|+++..+.+++.++++.+++++++++.........  .......     ....        ...........++
T Consensus       100 aGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~~-----~~~~--------~~~~~~~~~~~~~  164 (620)
T 4dg8_A          100 SGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG--LPCVPVR-----HLPA--------APASVARPCFAAD  164 (620)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT--SCEEEGG-----GCCC--------CCCCSSCCCCCTT
T ss_pred             hCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccC--Cceeeec-----cCCc--------CCccccCCCCCCC
Confidence            99999999999999999999999999999976544332221  1111110     0000        1111122245689


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC--CCCH
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG--KFDF  264 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~--~~~~  264 (349)
                      ++++|+|||||||.||||+++|+++.+.+.. ...+. +.++++++...|++|+.++..++.+|+.|+++++.+  .+++
T Consensus       165 d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~  242 (620)
T 4dg8_A          165 QIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLA-FAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDP  242 (620)
T ss_dssp             SEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGT-TCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCH
T ss_pred             CeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhC-CCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCH
Confidence            9999999999999999999999999887766 44455 789999999999999999988999999999999974  6899


Q ss_pred             HHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccC
Q 045351          265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       265 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G  338 (349)
                      ..+++.|+++++|++.++|++++.|.+..    ..++++||.+++||++++++..+++.+.+++.   +.|+.||.+
T Consensus       243 ~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~----~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~  315 (620)
T 4dg8_A          243 GVLRQLIGERGADSAWLTASLFNTLVDLD----PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENT  315 (620)
T ss_dssp             HHHHHHHHTTCCCEEEEEHHHHHHHHHHC----GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGC
T ss_pred             HHHHHHHHHhCCcEEEccHHHHHHHHhcC----hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhh
Confidence            99999999999999999999999998764    34578999999999999999999999888654   345556654

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=9.1e-44  Score=340.85  Aligned_cols=287  Identities=15%  Similarity=0.146  Sum_probs=242.3

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      ..++.++|..++  +++ |+++|+++.  ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||++
T Consensus        74 ~~~l~~~l~~~a--~~~-pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~  147 (570)
T 4gr5_A           74 GACVHELFEAQA--ARA-PDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVLK  147 (570)
T ss_dssp             SCCHHHHHHHHH--HHC-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH--HHC-CCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            479999999999  999 999999997  8999999999999999999999 9999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      +|++++|+++..+.+++.++++.+++++++++......+...  ..+.......    ..       ...........++
T Consensus       148 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~----~~-------~~~~~~~~~~~~~  214 (570)
T 4gr5_A          148 AGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT--TTLYVEDEAA----SD-------APAGNLATGVGPE  214 (570)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS--EEEECCC------------------CCCCCCCCCTT
T ss_pred             HCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC--cceeeecccc----cc-------ccccccCCCCCCC
Confidence            999999999999999999999999999999998765544331  1111111000    00       1111222346789


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC--CCCH
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG--KFDF  264 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~--~~~~  264 (349)
                      ++++|+|||||||.||||++||+++.+.+.. ...++ +.+++++++..|++|..+...++.+++.|+++++.+  .+++
T Consensus       215 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~  292 (570)
T 4gr5_A          215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAG-FGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDP  292 (570)
T ss_dssp             SEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSC-CSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCH
T ss_pred             CeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcC-CCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCH
Confidence            9999999999999999999999999887765 34444 688999999999999888888899999999999986  5799


Q ss_pred             HHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccC
Q 045351          265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       265 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G  338 (349)
                      ..+++.|+++++|++.++|+++..|.+.. .   .++++||.+++||+++++++.+++.+.+++.   +.|+.||.+
T Consensus       293 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~  365 (570)
T 4gr5_A          293 LEIGELVARHGVTMLQLSASLFNFLVDEV-P---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESM  365 (570)
T ss_dssp             HHHHHHHHHHTCCEEEEEHHHHHHHHHHC-G---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGC
T ss_pred             HHHHHHHHHcCCcEEEecHHHHHHHHhhc-h---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhhe
Confidence            99999999999999999999999999874 2   3578999999999999999999999998654   335566654

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=4.6e-44  Score=340.83  Aligned_cols=300  Identities=19%  Similarity=0.217  Sum_probs=244.3

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeC--CCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDT--ASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLF  105 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~--~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~  105 (349)
                      .|+.++|..++  +.+ |+++|+++.  ..++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+
T Consensus        18 ~~l~~~l~~~a--~~~-p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~   93 (541)
T 1v25_A           18 LNLWDFLERAA--ALF-GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFAVP   93 (541)
T ss_dssp             CCTHHHHHHHH--HHS-TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH--HhC-CCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence            68999999999  889 999999952  236899999999999999999998 999999999999999999999999999


Q ss_pred             hcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----Cc-ceEEeCCCC---ccccccccCCCCCCCCc
Q 045351          106 SLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KY-GTVLLDSPE---FEPLSATDSLDYYDDDE  176 (349)
Q Consensus       106 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~  176 (349)
                      ++|++++|+++..+.+++.++++.++++++|++.+..+.+...     .. .++.++...   ...+......    ...
T Consensus        94 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  169 (541)
T 1v25_A           94 GMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE----EAD  169 (541)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCS----CCC
T ss_pred             hcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhc----cCC
Confidence            9999999999999999999999999999999988765433221     11 233333221   0000000000    010


Q ss_pred             cccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhh--hhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCC
Q 045351          177 ERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG--GHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGE  254 (349)
Q Consensus       177 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~--~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~  254 (349)
                         .....++++++|+|||||||.||||++||+++......  ....++ +.+++++++.+|++|.+++..++.+++.|+
T Consensus       170 ---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~  245 (541)
T 1v25_A          170 ---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA-LSEKDVVLPVVPMFHVNAWCLPYAATLVGA  245 (541)
T ss_dssp             ---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTC-CCTTCEEEECSCTTSHHHHTHHHHHHHHTC
T ss_pred             ---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhccccc-CCCCCEEEEeccchhhhHHHHHHHHHhcCc
Confidence               12456789999999999999999999999999877655  234455 688999999999999999977889999999


Q ss_pred             EEEEcC-CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--Cccc
Q 045351          255 SLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNR  331 (349)
Q Consensus       255 ~~v~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~  331 (349)
                      ++++.+ .+++..+++.++++++|++.++|+++..|.+.. .....++++||.+++||+++++++.+++ +.++  ..+.
T Consensus       246 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~  323 (541)
T 1v25_A          246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYL-ESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQG  323 (541)
T ss_dssp             EEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHH-HHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEE
T ss_pred             eEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhh-hccCCcchhccEEEECCCCCCHHHHHHH-HHhCCceeec
Confidence            999986 479999999999999999999999999998865 4445678999999999999999999999 6663  2344


Q ss_pred             ccccccCcee
Q 045351          332 QLCLEFGAPI  341 (349)
Q Consensus       332 ~~~~~~G~~~  341 (349)
                      |+.||.|..+
T Consensus       324 YG~TE~~~~~  333 (541)
T 1v25_A          324 YGLTETSPVV  333 (541)
T ss_dssp             EECGGGSSEE
T ss_pred             ccccccccce
Confidence            6677776433

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=3.8e-44  Score=339.30  Aligned_cols=295  Identities=17%  Similarity=0.125  Sum_probs=249.7

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +|+.+.|..++  +++ |+++|+++.  ++++||+||+++++++|+.|.++.|.++|++|+++++|++++++++|||+++
T Consensus         1 m~l~~~l~~~a--~~~-p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~   75 (511)
T 3e7w_A            1 MKLLHAIQTHA--ETY-PQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA   75 (511)
T ss_dssp             CCHHHHHHHHH--HHS-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHH--HHC-CCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence            58999999999  999 999999997  8999999999999999999987458899999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |++++|+++..+.+++.++++.+++++++++..............+.     +.++....      ...........+++
T Consensus        76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~~~  144 (511)
T 3e7w_A           76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVS-----AEELLENE------GGSVSQDQWVKEHE  144 (511)
T ss_dssp             TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEE-----HHHHHTSC------SCCCCGGGSCCTTS
T ss_pred             CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceec-----Hhhhhccc------cCCccccccCCCCC
Confidence            99999999999999999999999999999976433221111111111     11111110      01112223456789


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCC---CCH
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGK---FDF  264 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~  264 (349)
                      +++|+|||||||.||||++||+++...+......++ +.+++++++..|++|.+++..++.++..|+++++.+.   +++
T Consensus       145 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  223 (511)
T 3e7w_A          145 TFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP-VSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKP  223 (511)
T ss_dssp             EEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHST-TTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSH
T ss_pred             eEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcC-CCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCH
Confidence            999999999999999999999999999988888887 7899999999999999999889999999999999975   689


Q ss_pred             HHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccCce
Q 045351          265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGAP  340 (349)
Q Consensus       265 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~~  340 (349)
                      ..+++.++++++|++.++|++++.++..+ ......++++|.+++||+++++++.+++.+.||+.   +.|++||.|..
T Consensus       224 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~  301 (511)
T 3e7w_A          224 KVLFEELKKSGLNVWTSTPSFVQMCLMDP-GFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVA  301 (511)
T ss_dssp             HHHHHHHHHHCCSEEEECHHHHHHHHTST-TCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSC
T ss_pred             HHHHHHHHHcCCcEEEecHHHHHHHHhcc-ccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheee
Confidence            99999999999999999999999999887 66777889999999999999999999999999654   34566776543

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=4.4e-44  Score=347.69  Aligned_cols=301  Identities=20%  Similarity=0.213  Sum_probs=243.1

Q ss_pred             chhhhhhcccCCCCCCCCCeEEEeCC----CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHH
Q 045351           29 SVTSYVFSLLESHAPPPDTTALIDTA----SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL  104 (349)
Q Consensus        29 tl~~~l~~~~~~~~~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~  104 (349)
                      ++.++|..++  +.+ |+++|+++..    .++++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++|||
T Consensus        77 ~~~~~l~~~a--~~~-pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~  152 (652)
T 1pg4_A           77 LAANCLDRHL--QEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLAC  152 (652)
T ss_dssp             HHHHHTGGGH--HHH-TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHh--ccC-CCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            4677888888  778 9999999731    34789999999999999999998 99999999999999999999999999


Q ss_pred             HhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc-------------cccc---C-cceEEeCCCC--------
Q 045351          105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK-------------IPQL---K-YGTVLLDSPE--------  159 (349)
Q Consensus       105 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-------------~~~~---~-~~~~~~~~~~--------  159 (349)
                      +++|++++|+++..+.+++.+++++++++++|+++.....             +...   . ..++.++...        
T Consensus       153 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~  232 (652)
T 1pg4_A          153 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG  232 (652)
T ss_dssp             HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBT
T ss_pred             HHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCC
Confidence            9999999999999999999999999999999998764321             0111   1 1234443211        


Q ss_pred             ----ccccccccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhh-hhccccCCCCCcEEEEe
Q 045351          160 ----FEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG-GHAVRAARSRPAVVLCT  234 (349)
Q Consensus       160 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~l~~  234 (349)
                          +.++...       ...........++++++|+|||||||.||||+++|++++..+.. ....++ +.++|++++.
T Consensus       233 ~~~~~~~~~~~-------~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~d~~l~~  304 (652)
T 1pg4_A          233 RDLWWRDLIEK-------ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD-YHPGDIYWCT  304 (652)
T ss_dssp             TEEEHHHHHTT-------SCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTT-CCTTCEEEEC
T ss_pred             CceeHHHHHhh-------cCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcC-CCCCCEEEEc
Confidence                0111110       01111122456789999999999999999999999999876643 344455 7899999999


Q ss_pred             cChhhHhhH-HHHHhhhhcCCEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCC--CCCCCCcchhee
Q 045351          235 VPYFHSYGF-TCCLRSLGMGESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSIEVV  307 (349)
Q Consensus       235 ~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~~~~l~~lr~i  307 (349)
                      .|++|+.|+ ..++.+|+.|+++++.+.    +++..+++.|+++++|+++++|++++.|.+.. .  ....++++||.+
T Consensus       305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~~l~sLr~i  383 (652)
T 1pg4_A          305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEG-DKAIEGTDRSSLRIL  383 (652)
T ss_dssp             SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTG-GGGTTTCCCTTCCEE
T ss_pred             cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcC-ccccccCCcCceEEE
Confidence            999999999 778899999999999864    58999999999999999999999999999864 3  345678999999


Q ss_pred             hccCCCCCHHHHHHHHHHcC-----CcccccccccCceee
Q 045351          308 ASGGAHLTLSVIRKYLQLNR-----TVNRQLCLEFGAPII  342 (349)
Q Consensus       308 ~~gG~~l~~~~~~~~~~~~~-----~~~~~~~~~~G~~~i  342 (349)
                      ++||+++++++++++.+.++     ..+.|+.||.|+.++
T Consensus       384 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~  423 (652)
T 1pg4_A          384 GSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI  423 (652)
T ss_dssp             EEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred             EEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccccee
Confidence            99999999999999999886     234456677664433

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.9e-43  Score=335.90  Aligned_cols=297  Identities=20%  Similarity=0.215  Sum_probs=236.8

Q ss_pred             chhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcC
Q 045351           29 SVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLG  108 (349)
Q Consensus        29 tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G  108 (349)
                      ++.+++...+  + + |+++|+++.  ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+++|
T Consensus        25 ~~~~~l~~~~--~-~-p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G   97 (529)
T 2v7b_A           25 FAAYLFRLNE--T-R-AGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGALYAG   97 (529)
T ss_dssp             HHHHHHHHTG--G-G-TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhh--c-c-CCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC
Confidence            4888888888  8 8 999999987  7899999999999999999998 999999999999999999999999999999


Q ss_pred             CeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-------CcceEEeCCCC--------ccccccccCCCCCC
Q 045351          109 VVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-------KYGTVLLDSPE--------FEPLSATDSLDYYD  173 (349)
Q Consensus       109 ~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~--------~~~~~~~~~~~~~~  173 (349)
                      ++++|+++..+.+++.++++.+++++++++....+.+...       ...++..+...        +.++....      
T Consensus        98 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  171 (529)
T 2v7b_A           98 VVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAA------  171 (529)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTS------
T ss_pred             ceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccC------
Confidence            9999999999999999999999999999988755433221       12233333211        11111100      


Q ss_pred             CCccccccccCCCCcEEEEeccCCCCCCceeeechhhH-HHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhh
Q 045351          174 DDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNL-VAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLG  251 (349)
Q Consensus       174 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~  251 (349)
                       ..........++++++|+|||||||.||||++||+++ ..........++ +.+++++++..|++|.+|+ ..++.++.
T Consensus       172 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~g~~~~~~~~l~  249 (529)
T 2v7b_A          172 -APAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILG-IAENDVVFSAAKLFFAYGLGNGLTFPLS  249 (529)
T ss_dssp             -CCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCC-CCTTCEEEESSCTTSHHHHHHHTHHHHH
T ss_pred             -CCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccC-CCCCcEEEEeecHHHHHHHHHHHHHHHh
Confidence             1111122456799999999999999999999999999 666655555566 7899999999999999999 45678999


Q ss_pred             cCCEEEEc-CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC--C
Q 045351          252 MGESLVCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--T  328 (349)
Q Consensus       252 ~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~  328 (349)
                      .|+++++. +.+++..+++.++++++|++.++|+++..|++.. ........++|.+++||+++++++.+++.+.++  .
T Consensus       250 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i  328 (529)
T 2v7b_A          250 VGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP-NLPARADVAIRICTSAGEALPREIGERFTAHFGCEI  328 (529)
T ss_dssp             HTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT-TCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCE
T ss_pred             cCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc-ccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCce
Confidence            99999988 6789999999999999999999999999999875 433331248999999999999999999999874  3


Q ss_pred             cccccccccCcee
Q 045351          329 VNRQLCLEFGAPI  341 (349)
Q Consensus       329 ~~~~~~~~~G~~~  341 (349)
                      .+.|+.+|.+...
T Consensus       329 ~~~YG~TE~~~~~  341 (529)
T 2v7b_A          329 LDGIGSTEMLHIF  341 (529)
T ss_dssp             EEEEECTTTSSEE
T ss_pred             eeeEchhhcCcee
Confidence            3445667765433

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=5.7e-44  Score=337.29  Aligned_cols=296  Identities=23%  Similarity=0.255  Sum_probs=242.1

Q ss_pred             hhhhcccCCCCCCCCCeEEEeC-CCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhcCCe
Q 045351           32 SYVFSLLESHAPPPDTTALIDT-ASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVV  110 (349)
Q Consensus        32 ~~l~~~~~~~~~~~~~~ai~~~-~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  110 (349)
                      +++...+  +++ |++.|++.. .+++++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++
T Consensus         4 ~l~~~~a--~~~-p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~   79 (503)
T 4fuq_A            4 NLFARLF--DKL-DDPHKLAIETAAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGGV   79 (503)
T ss_dssp             CHHHHHH--SCC-SCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred             hHHHHHH--HhC-CCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            4566777  777 888888731 237899999999999999999998 99999999999999999999999999999999


Q ss_pred             EecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----cCcceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          111 VSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----LKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       111 ~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      ++|+++..+.+++.++++.+++++++++....+.+..    ....+..++......+......    ...........++
T Consensus        80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  155 (503)
T 4fuq_A           80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAG----ASEAFATIDRGAD  155 (503)
T ss_dssp             EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHT----SCSCCCCCCCCTT
T ss_pred             EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhc----CCCCcCcCCCCCC
Confidence            9999999999999999999999999999876554432    1223333332221111100000    1111122356789


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHH
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFG  265 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~  265 (349)
                      ++++|+|||||||.||||++||+++.+.+......++ +.+++++++.+|++|.+|+ ...+.+++.|+++++.+++++.
T Consensus       156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~  234 (503)
T 4fuq_A          156 DLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR-FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPD  234 (503)
T ss_dssp             SEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTT-CCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHH
T ss_pred             CeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhC-CCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHH
Confidence            9999999999999999999999999999988888887 7999999999999999998 5677899999999999999999


Q ss_pred             HHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cccccccccCc
Q 045351          266 RMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQLCLEFGA  339 (349)
Q Consensus       266 ~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~~~~~G~  339 (349)
                      .+++.++  ++|+++++|+++..|++.+ .....+++++|.+++||+++++++.++|.+.++.  .+.|+.||.|.
T Consensus       235 ~~~~~i~--~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~  307 (503)
T 4fuq_A          235 KILDLMA--RATVLMGVPTFYTRLLQSP-RLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNM  307 (503)
T ss_dssp             HHHHHHT--TCCEEEECHHHHHHHHTCT-TCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEE
T ss_pred             HHHHHHh--hcCEEEEHHHHHHHHHhCC-CccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCc
Confidence            9999998  8999999999999999987 6677778999999999999999999999999853  34456666653

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.7e-43  Score=343.87  Aligned_cols=309  Identities=16%  Similarity=0.169  Sum_probs=244.2

Q ss_pred             chhhhhhcccCCCCCCCCCeEEEeC----CCCceeeHHHHHHHHHHHHHHHh-hhcCCCCCCEEEEEcCCCchHHHHHHH
Q 045351           29 SVTSYVFSLLESHAPPPDTTALIDT----ASRHRILYPDLTLRIKTLAYSLK-TKYKLSKYDVAFLLSQNSVRVPVLYLS  103 (349)
Q Consensus        29 tl~~~l~~~~~~~~~~~~~~ai~~~----~~~~~~Ty~~l~~~~~~~a~~L~-~~~g~~~gd~V~i~~~n~~~~~~~~lA  103 (349)
                      ++.++|..++  +.+ |+++|+++.    ..++++||+||.+++.++|+.|+ + .|+++||+|+|+++|++++++++||
T Consensus        83 ~~~~~l~~~a--~~~-pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~e~v~a~lA  158 (663)
T 1ry2_A           83 ACYNCVDRHA--LKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVPEAIITLLA  158 (663)
T ss_dssp             HHHHHTHHHH--TTC-TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHh--ccC-CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            5778888888  889 999999973    23589999999999999999999 8 9999999999999999999999999


Q ss_pred             HHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc---------c----ccc-C-cceEEeCCCCc--cccccc
Q 045351          104 LFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK---------I----PQL-K-YGTVLLDSPEF--EPLSAT  166 (349)
Q Consensus       104 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~---------~----~~~-~-~~~~~~~~~~~--~~~~~~  166 (349)
                      |+++|++++|+++..+.+++.+++++++++++|+++.....         +    ... . ..+++++....  ......
T Consensus       159 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  238 (663)
T 1ry2_A          159 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAP  238 (663)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSS
T ss_pred             HHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCC
Confidence            99999999999999999999999999999999998764321         1    110 1 12343332110  000000


Q ss_pred             ----cCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhh-hhccccCCCCCcEEEEecChhhHh
Q 045351          167 ----DSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG-GHAVRAARSRPAVVLCTVPYFHSY  241 (349)
Q Consensus       167 ----~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~  241 (349)
                          ..................++++++|+|||||||.||||+++|++++..+.. ....++ +.++|++++..|++|+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~  317 (663)
T 1ry2_A          239 RDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFD-THQEDVFFTAGDIGWIT  317 (663)
T ss_dssp             SEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSC-CCSSCEEEECSCTTSHH
T ss_pred             ccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcC-CCCCcEEEEcCCcHHhh
Confidence                000000001111123456799999999999999999999999998876643 344455 68999999999999999


Q ss_pred             hH-HHHHhhhhcCCEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCC--CCCCCCcchheehccCCCC
Q 045351          242 GF-TCCLRSLGMGESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGT--MDGYDLSSIEVVASGGAHL  314 (349)
Q Consensus       242 g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~--~~~~~l~~lr~i~~gG~~l  314 (349)
                      |+ +.++.+|+.|+++++.+.    +++..+++.|+++++|+++++|++++.|.+.. .  ....++++||.+++||+++
T Consensus       318 g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-~~~~~~~~l~sLr~i~~gGe~l  396 (663)
T 1ry2_A          318 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG-DSYIENHSLKSLRCLGSVGEPI  396 (663)
T ss_dssp             HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC-TTSSSSCCCTTCCEEEECSSCC
T ss_pred             hhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcC-ccccccCCcCceEEEEEEcCCC
Confidence            99 778899999999999864    58999999999999999999999999998875 3  3566799999999999999


Q ss_pred             CHHHHHHHHHHcC-----CcccccccccCceeee
Q 045351          315 TLSVIRKYLQLNR-----TVNRQLCLEFGAPIIS  343 (349)
Q Consensus       315 ~~~~~~~~~~~~~-----~~~~~~~~~~G~~~i~  343 (349)
                      ++++++++.+.++     ..+.|+.||.|+.++.
T Consensus       397 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~  430 (663)
T 1ry2_A          397 AAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT  430 (663)
T ss_dssp             CHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred             CHHHHHHHHHHhCCCCceEEEeECCccccCeeec
Confidence            9999999999875     2344566777654443

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1e-43  Score=339.60  Aligned_cols=289  Identities=15%  Similarity=0.190  Sum_probs=240.1

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      +.|+.++|..++  +++ |+++|+++.  ++++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus        38 ~~~l~~~l~~~a--~~~-p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  111 (563)
T 1amu_A           38 DKTIHQLFEEQV--SKR-PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLK  111 (563)
T ss_dssp             TCCHHHHHHHHH--HHC-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHH--HHC-CCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            368999999999  899 999999987  7899999999999999999998 9999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccC--cceEEeCCCCccccccccCCCCCCCCccccccccC
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK--YGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVS  184 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (349)
                      +|++++|+++..+.+++.++++.++++++|++.+....+....  ..+..++...+..           ...........
T Consensus       112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  180 (563)
T 1amu_A          112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI-----------REGTNLHVPSK  180 (563)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTT-----------SCCSCCCCCCC
T ss_pred             hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhcc-----------ccCccCCCCCC
Confidence            9999999999999999999999999999999886544433221  1222222211110           00011122456


Q ss_pred             CCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCC---
Q 045351          185 LSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGK---  261 (349)
Q Consensus       185 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---  261 (349)
                      ++++++|+|||||||.||||++||+++.+.+......++ +.++|++++..|++|..++..++.+|+.|+++++.+.   
T Consensus       181 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~  259 (563)
T 1amu_A          181 STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN-VTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTI  259 (563)
T ss_dssp             TTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSC-CCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred             CCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcC-CCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhh
Confidence            789999999999999999999999999998887777777 7899999999999999999888999999999999975   


Q ss_pred             CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCcccccccccCce
Q 045351          262 FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAP  340 (349)
Q Consensus       262 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~G~~  340 (349)
                      +++..+++.++++++|++.++|+++..|...       .++++|.+++||+++++++.+++.+..+..+.|+.||.|..
T Consensus       260 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~YG~TE~~~~  331 (563)
T 1amu_A          260 NDFVKFEQYINQKEITVITLPPTYVVHLDPE-------RILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTIC  331 (563)
T ss_dssp             TCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------TCCSCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSC
T ss_pred             cCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------ccccccEEEEEEecCCHHHHHHHHhCCeEEEEECcCHHhHh
Confidence            6999999999999999999999998766432       36789999999999999999999887666666778887643

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=6.4e-43  Score=335.16  Aligned_cols=308  Identities=13%  Similarity=0.127  Sum_probs=244.4

Q ss_pred             Ccchh-hhhhcccCCCCCCCCCeEEEeCC---CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHH
Q 045351           27 TTSVT-SYVFSLLESHAPPPDTTALIDTA---SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYL  102 (349)
Q Consensus        27 ~~tl~-~~l~~~~~~~~~~~~~~ai~~~~---~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~l  102 (349)
                      +.|+. ++|..++  +.+ |+++|+++.+   .++++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++|
T Consensus        54 ~~n~~~~~l~~~a--~~~-pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~e~~~~~l  129 (580)
T 3etc_A           54 NFNFAYDVVDVYA--RDS-PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRYDFWYCML  129 (580)
T ss_dssp             SCCHHHHTHHHHH--HHC-TTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCTHHHHHHH
T ss_pred             cchHHHHHHHHHH--hhC-CCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence            35665 9999999  889 9999999621   24799999999999999999998 999999999999999999999999


Q ss_pred             HHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccc--ccccc-------cCcceEEeCCCC---ccccccccCCC
Q 045351          103 SLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA--HKIPQ-------LKYGTVLLDSPE---FEPLSATDSLD  170 (349)
Q Consensus       103 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~~~-------~~~~~~~~~~~~---~~~~~~~~~~~  170 (349)
                      ||+++|++++|+++..+.+++.++++.++++++|++.+..  ..+..       .....+.++...   +.++.......
T Consensus       130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (580)
T 3etc_A          130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEES  209 (580)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHS
T ss_pred             HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhC
Confidence            9999999999999999999999999999999999987643  22221       112344444221   11111110000


Q ss_pred             CCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHH-HHHhh
Q 045351          171 YYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT-CCLRS  249 (349)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~  249 (349)
                      ..............++++++|+|||||||.||||.++|.+++..+........ +.+++++++..|++|..+++ .++.+
T Consensus       210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (580)
T 3etc_A          210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQN-VEDDGLHYTVADSGWGKCVWGKLYGQ  288 (580)
T ss_dssp             CSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSC-CCTTCEEEECCCTTSTHHHHHTTHHH
T ss_pred             CcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhC-CCCCceEEEeCChHHHHHHHHHHHHH
Confidence            00000011113567899999999999999999999999999888776555555 68899999999999988884 57789


Q ss_pred             hhcCCEEEEc--CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC
Q 045351          250 LGMGESLVCM--GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR  327 (349)
Q Consensus       250 l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  327 (349)
                      +..|+++++.  .++++..+++.|+++++|+++++|++++.|.+.  .....++++||.+++||+++++++.++|.+.++
T Consensus       289 l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~--~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g  366 (580)
T 3etc_A          289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE--DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTG  366 (580)
T ss_dssp             HHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS--CC---CCTTCCEEEECSSCCCHHHHHHHHHHHS
T ss_pred             HhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc--ccccCCCccceEEEEccCCCCHHHHHHHHHHhC
Confidence            9999999988  578999999999999999999999999999886  556677899999999999999999999999874


Q ss_pred             --CcccccccccCcee
Q 045351          328 --TVNRQLCLEFGAPI  341 (349)
Q Consensus       328 --~~~~~~~~~~G~~~  341 (349)
                        ..+.|+.||.+..+
T Consensus       367 ~~i~~~YG~TE~~~~~  382 (580)
T 3etc_A          367 IKLMEGFGQTETVVTI  382 (580)
T ss_dssp             CCCEEEECCTTSSCCE
T ss_pred             CeEeccccccccccee
Confidence              33446677775443

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.7e-43  Score=334.24  Aligned_cols=302  Identities=21%  Similarity=0.251  Sum_probs=241.5

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +|+.++|..++  +++ |+++|+++.  ++++||+||.++++++|+.|++ .   +||+|+++++|+++++++++||+++
T Consensus         1 mtl~~~l~~~a--~~~-pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~~   71 (501)
T 3ipl_A            1 MSLDFWLYKQA--QQN-GHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWLA   71 (501)
T ss_dssp             --CCCHHHHHH--HHH-TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHH--Hhc-CCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            47889999999  999 999999997  7999999999999999999998 5   8999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc----CcceEEeC--CCCc------cccccccCCCCCC-C
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL----KYGTVLLD--SPEF------EPLSATDSLDYYD-D  174 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~--~~~~------~~~~~~~~~~~~~-~  174 (349)
                      |++++|+++..+.+++.++++.+++++++++..........    ........  ....      ............. .
T Consensus        72 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (501)
T 3ipl_A           72 NIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKES  151 (501)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CC
T ss_pred             CCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCC
Confidence            99999999999999999999999999999987655433210    00000000  0000      0000000000000 0


Q ss_pred             CccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCC
Q 045351          175 DEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGE  254 (349)
Q Consensus       175 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~  254 (349)
                      ..........++++++|+|||||||.||||++||+++...+......++ +.+++++++..|++|.+|+..++.+++.|+
T Consensus       152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~  230 (501)
T 3ipl_A          152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-FDRDTNWLSVLPIYHISGLSVLLRAVIEGF  230 (501)
T ss_dssp             HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTC-CCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred             cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhC-CCccCEEEEeCcHHHHHHHHHHHHHHHcCc
Confidence            0111223457899999999999999999999999999999988888887 789999999999999999988899999999


Q ss_pred             EEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHH-cCCccccc
Q 045351          255 SLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL-NRTVNRQL  333 (349)
Q Consensus       255 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~-~~~~~~~~  333 (349)
                      ++++.+++++..+++.|+++++|++.++|++++.|.+.. ....   .+||.+++||+++++++.+++.+. .+..+.|+
T Consensus       231 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~---~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG  306 (501)
T 3ipl_A          231 TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQG-LHEP---YNLQKILLGGAKLSATMIETALQYNLPIYNSFG  306 (501)
T ss_dssp             EEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHT-CCSC---TTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEE
T ss_pred             eEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcC-CCCc---CcccEEEEeCCCCCHHHHHHHHHhCCCEecccc
Confidence            999999999999999999999999999999999999886 4333   289999999999999999999873 23445567


Q ss_pred             ccccCceeee
Q 045351          334 CLEFGAPIIS  343 (349)
Q Consensus       334 ~~~~G~~~i~  343 (349)
                      .+|.|+.++.
T Consensus       307 ~TE~~~~~~~  316 (501)
T 3ipl_A          307 MTETCSQFLT  316 (501)
T ss_dssp             EGGGTEEEEE
T ss_pred             ccccccceee
Confidence            7887754443

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=6.4e-43  Score=330.81  Aligned_cols=294  Identities=20%  Similarity=0.192  Sum_probs=244.0

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      +|+.++|..++  +++ ||++|+++.  ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++
T Consensus         6 ~tl~~~l~~~a--~~~-pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~   79 (509)
T 3ivr_A            6 FTLADVYRRNA--ALF-PDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVALI   79 (509)
T ss_dssp             CCHHHHHHHHH--HHS-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHH--HHC-CCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence            89999999999  999 999999997  8999999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----c-Cc-ceEEeCCC--CccccccccCCCCCCCCcccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----L-KY-GTVLLDSP--EFEPLSATDSLDYYDDDEERV  179 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  179 (349)
                      |++++|+++..+.+++.++++.+++++++++....+.+..    . .. .++.++..  .+..+....      ......
T Consensus        80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  153 (509)
T 3ivr_A           80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLA------SDTPFS  153 (509)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTC------CCSCCC
T ss_pred             CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhcc------CCCCCC
Confidence            9999999999999999999999999999999876544211    1 11 23333221  122221100      111122


Q ss_pred             ccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEc
Q 045351          180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCM  259 (349)
Q Consensus       180 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~  259 (349)
                      .....++++++|+|||||||.||||++||+++...+......++ +.+++++++.+|++|.+|+...+.+++.|++.++.
T Consensus       154 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~  232 (509)
T 3ivr_A          154 APEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-LTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA  232 (509)
T ss_dssp             CCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTT-CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             cCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhC-CCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence            33567899999999999999999999999999999988888887 79999999999999999997777777777777777


Q ss_pred             CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccc
Q 045351          260 GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLE  336 (349)
Q Consensus       260 ~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~  336 (349)
                      ..+++..+++.|+++++|++.++|.++..|++..   ...+++++|.+..||++   +..+++.+.+|+.   +.|+.||
T Consensus       233 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE  306 (509)
T 3ivr_A          233 AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSE  306 (509)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC---CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGG
T ss_pred             cccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc---cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccc
Confidence            7899999999999999999999999999999874   44567899999999987   8889999998654   3356677


Q ss_pred             cCce
Q 045351          337 FGAP  340 (349)
Q Consensus       337 ~G~~  340 (349)
                      .|..
T Consensus       307 ~~~~  310 (509)
T 3ivr_A          307 TSGL  310 (509)
T ss_dssp             GTEE
T ss_pred             cccc
Confidence            6643

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=2.6e-43  Score=334.48  Aligned_cols=294  Identities=17%  Similarity=0.187  Sum_probs=245.1

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.+.|...+  +.+ |+++|+.+.  ++++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus         4 ~~l~~~l~~~a--~~~-p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~   77 (521)
T 3l8c_A            4 KDMIDSIEQFA--QTQ-ADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTKS   77 (521)
T ss_dssp             CCHHHHHHHHH--HHS-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH--HHC-CCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            58999999999  999 999999997  8999999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSD  187 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (349)
                      |++++|+++..+.+++.++++.+++++++++++....+..  ...+...     ++......    ...........+++
T Consensus        78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~d  146 (521)
T 3l8c_A           78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--ISLVSLS-----EIESAKLA----EMPYERTHSVKGDD  146 (521)
T ss_dssp             TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--SEEEEHH-----HHHHHHHH----TCCCCCSSCCCTTS
T ss_pred             CCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc--Ccccchh-----hhhhcccc----cCCcccCCCCCCCC
Confidence            9999999999999999999999999999998865543322  1111111     01000000    01111223467799


Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhcc--ccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCC---
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV--RAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKF---  262 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~---  262 (349)
                      +++|+|||||||.||||++||+++...+......  +. ...++++++..|++|..++..++.++..|+++++.+.+   
T Consensus       147 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  225 (521)
T 3l8c_A          147 NYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFD-VPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVA  225 (521)
T ss_dssp             EEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTC-CCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTT
T ss_pred             cEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccC-CCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhh
Confidence            9999999999999999999999999887766554  44 67889999999999999998889999999999999754   


Q ss_pred             CHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccCc
Q 045351          263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       263 ~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G~  339 (349)
                      ++..+++.+.++++|++.++|+++..+.... .....+++++|.+++||+++++++.+++.+.+++.   +.|++||.|.
T Consensus       226 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~  304 (521)
T 3l8c_A          226 DFKQLFTTIAQLPVGIWTSTPSFADMAMLSD-DFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV  304 (521)
T ss_dssp             CHHHHHHHHHHSCCSEEEECHHHHHHHHTST-TCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred             CHHHHHHHHHHcCCcEEEeCCCHHHHHhhhh-ccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhh
Confidence            8999999999999999999999999998886 66677889999999999999999999999998654   3456677654


Q ss_pred             e
Q 045351          340 P  340 (349)
Q Consensus       340 ~  340 (349)
                      .
T Consensus       305 ~  305 (521)
T 3l8c_A          305 A  305 (521)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.3e-42  Score=335.76  Aligned_cols=299  Identities=19%  Similarity=0.179  Sum_probs=244.0

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      +.|+.++|..++    . ||++|+++.  ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||++
T Consensus        26 ~~~l~~~~~~~a----~-pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~   97 (617)
T 3rg2_A           26 DLPLTDILTRHA----A-SDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLK   97 (617)
T ss_dssp             CCCTTHHHHTTT----T-CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHhh----C-CCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence            489999999988    4 799999997  8999999999999999999998 9999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccc---------c-cCcc-eEEeCCCCccccccccCCCCCCCC
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIP---------Q-LKYG-TVLLDSPEFEPLSATDSLDYYDDD  175 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~---------~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  175 (349)
                      +|++++|+++..+.+++.++++.+++++++++........         . .... +...+......+......    ..
T Consensus        98 aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  173 (617)
T 3rg2_A           98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINH----PA  173 (617)
T ss_dssp             HTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHS----CC
T ss_pred             cCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhcc----cc
Confidence            9999999999999999999999999999999876431110         0 1112 222222111111100000    11


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHH--HHHhhhhcC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFT--CCLRSLGMG  253 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~--~~~~~l~~G  253 (349)
                      .........++++++|+|||||||.||||+++|+++.+.+......++ +.+++++++.+|++|.+++.  .++.+++.|
T Consensus       174 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G  252 (617)
T 3rg2_A          174 EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQ-FTQQTRYLCAIPAAHNYAMSSPGSLGVFLAG  252 (617)
T ss_dssp             SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT-CCTTCEEEECSCTTSHHHHHSSHHHHHHHHT
T ss_pred             cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcC-CCCcceEEEeccchhhhhhhHHHHHHHHHcC
Confidence            111223456789999999999999999999999999999988888887 78999999999999999884  689999999


Q ss_pred             CEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcC-CCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC--cc
Q 045351          254 ESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-GTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT--VN  330 (349)
Q Consensus       254 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~-~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~  330 (349)
                      +++++.+.+++..+++.++++++|++.++|+++..+.+.. ......++++||.+++||+++++++.+++.+.++.  .+
T Consensus       253 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~  332 (617)
T 3rg2_A          253 GTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQ  332 (617)
T ss_dssp             CEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEE
Confidence            9999999899999999999999999999999999998753 02233468999999999999999999999998853  23


Q ss_pred             cccccccC
Q 045351          331 RQLCLEFG  338 (349)
Q Consensus       331 ~~~~~~~G  338 (349)
                      .|+.+|.+
T Consensus       333 ~YG~tE~~  340 (617)
T 3rg2_A          333 VFGMAEGL  340 (617)
T ss_dssp             EEEETTEE
T ss_pred             EeccCcce
Confidence            34455543

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1.6e-43  Score=340.86  Aligned_cols=300  Identities=17%  Similarity=0.180  Sum_probs=247.5

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCC--CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTA--SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLF  105 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~--~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~  105 (349)
                      +|+.++|..++  ..+ |+++|+++.+  .++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+
T Consensus        11 ~tl~~~l~~~a--~~~-p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~   86 (590)
T 3kxw_A           11 QSLVDVVRLRA--LHS-PNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLGCL   86 (590)
T ss_dssp             SSHHHHHHHHH--HHC-TTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHH--HhC-CCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence            89999999999  999 9999998642  35899999999999999999998 999999999999999999999999999


Q ss_pred             hcCCeEecCCCCC---CHHHHHHHHhhcCCeEEEEcCcccccccccC-------cceEEeCCCCccccccccCCCCCCCC
Q 045351          106 SLGVVVSPCNPSC---TIPEILRQIHLSKPVIAFATHDTAHKIPQLK-------YGTVLLDSPEFEPLSATDSLDYYDDD  175 (349)
Q Consensus       106 ~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (349)
                      ++|++++|+++..   +.+++.++++.+++++++++.+....+....       ..+..+..   ..+...       ..
T Consensus        87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~  156 (590)
T 3kxw_A           87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIAL---ESIELN-------RS  156 (590)
T ss_dssp             HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEG---GGCCGG-------GG
T ss_pred             HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeec---hhcccc-------cc
Confidence            9999999999988   4578999999999999999876554433211       01111110   011000       01


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHH-HHhhhhcCC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTC-CLRSLGMGE  254 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~  254 (349)
                      .........++++++|+|||||||.||||++||+++...+......++ +.+++++++.+|++|.+|+.. ++.+++.|+
T Consensus       157 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~  235 (590)
T 3kxw_A          157 SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFH-MNDETIIFSWLPPHHDMGLIGCILTPIYGGI  235 (590)
T ss_dssp             GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTT-CCTTCEEEECSCTTSHHHHHTTTHHHHHHTC
T ss_pred             ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhC-CCCcCeEEEecCCCcchhhHHHHHHHHhcCc
Confidence            111223567899999999999999999999999999999998888887 789999999999999999954 889999999


Q ss_pred             EEEEcCCC----CHHHHHHHHHhhcccEEEechHHHHHHHhcCC--CCCCCCCcchheehccCCCCCHHHHHHHHHHcCC
Q 045351          255 SLVCMGKF----DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGG--TMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT  328 (349)
Q Consensus       255 ~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~--~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~  328 (349)
                      ++++.+++    ++..+++.|+++++|++.++|.++..+.+...  .....++++||.+++||+++++++.+++.+.++.
T Consensus       236 ~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~  315 (590)
T 3kxw_A          236 QAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKE  315 (590)
T ss_dssp             EEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGG
T ss_pred             eEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHH
Confidence            99999865    89999999999999999999999999887530  3445678999999999999999999999998842


Q ss_pred             --------cccccccccCceee
Q 045351          329 --------VNRQLCLEFGAPII  342 (349)
Q Consensus       329 --------~~~~~~~~~G~~~i  342 (349)
                              .+.|+.||.|..+.
T Consensus       316 ~g~~~~~~~~~YG~TE~~~~~~  337 (590)
T 3kxw_A          316 FGFRKEAFYPCYGLAEATLLVT  337 (590)
T ss_dssp             GTCCGGGEEEEEECGGGSSEEE
T ss_pred             cCCCccccccccccccccceee
Confidence                    34466777765443

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=4.2e-42  Score=328.98  Aligned_cols=295  Identities=15%  Similarity=0.150  Sum_probs=239.1

Q ss_pred             chhhhhhcccCCCC-----CCCCCeEEEeCC---CCceeeHHHHHHHHHHHHHHHhhhc-CCCCCCEEEEEcCCCchHHH
Q 045351           29 SVTSYVFSLLESHA-----PPPDTTALIDTA---SRHRILYPDLTLRIKTLAYSLKTKY-KLSKYDVAFLLSQNSVRVPV   99 (349)
Q Consensus        29 tl~~~l~~~~~~~~-----~~~~~~ai~~~~---~~~~~Ty~~l~~~~~~~a~~L~~~~-g~~~gd~V~i~~~n~~~~~~   99 (349)
                      ++.+++..++  ..     + |+++|+++.+   .++++||+||.++++++|+.|.+ . |+++||+|+|+++|++++++
T Consensus        39 ~~~~~l~~~a--~~~~a~~~-p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e~~~  114 (570)
T 3c5e_A           39 FASDVLDHWA--DMEKAGKR-PPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPEWWL  114 (570)
T ss_dssp             HHHHTHHHHH--HHHHTTSS-CCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHHHHH
T ss_pred             HHHHHHHHHH--hhccccCC-CCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHHHHH
Confidence            4578888888  76     8 9999999732   24789999999999999999998 7 99999999999999999999


Q ss_pred             HHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----c-Cc-ceEEeCCCC------cccccccc
Q 045351          100 LYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----L-KY-GTVLLDSPE------FEPLSATD  167 (349)
Q Consensus       100 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----~-~~-~~~~~~~~~------~~~~~~~~  167 (349)
                      ++|||+++|++++|+++..+.+++.++++.++++++|++.+..+.+..    . .. .++.++...      +.++....
T Consensus       115 ~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (570)
T 3c5e_A          115 VILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEA  194 (570)
T ss_dssp             HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHS
T ss_pred             HHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhcc
Confidence            999999999999999999999999999999999999998876544322    1 11 233333211      11111110


Q ss_pred             CCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHH--HHhhhhccccCCCCCcEEEEecChhhHhhHH-
Q 045351          168 SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVA--AVAGGHAVRAARSRPAVVLCTVPYFHSYGFT-  244 (349)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-  244 (349)
                             ..........++++++|+|||||||.||||+++|+ ++.  ..... ..++ +.+++++++..|++|.+++. 
T Consensus       195 -------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~-~~~~d~~~~~~p~~~~~~~~~  264 (570)
T 3c5e_A          195 -------STTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTG-LQASDIMWTISDTGWILNILC  264 (570)
T ss_dssp             -------CSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTS-CCTTCEEEECCCTTSHHHHHH
T ss_pred             -------cccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcC-CCCCceEEEcCchHHHHHHHH
Confidence                   11111224567899999999999999999999999 444  33333 4455 68899999999999999994 


Q ss_pred             HHHhhhhcCCEEEEcC--CCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHH
Q 045351          245 CCLRSLGMGESLVCMG--KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKY  322 (349)
Q Consensus       245 ~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~  322 (349)
                      .++.++..|+++++.+  .+++..+++.|+++++|+++++|.+++.|.+.  .....++++||.+++||+++++++++++
T Consensus       265 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--~~~~~~~~~lr~i~~gGe~l~~~~~~~~  342 (570)
T 3c5e_A          265 SLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ--DLSSYKFPHLQNCVTVGESLLPETLENW  342 (570)
T ss_dssp             TTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS--CTTTCCCTTCCEEEEESSCCCHHHHHHH
T ss_pred             HHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc--cccccccccceEEEEcCCcCCHHHHHHH
Confidence            7889999999999986  78999999999999999999999999999886  3445678999999999999999999999


Q ss_pred             HHHcC--CcccccccccCc
Q 045351          323 LQLNR--TVNRQLCLEFGA  339 (349)
Q Consensus       323 ~~~~~--~~~~~~~~~~G~  339 (349)
                      .+.++  ..+.|+.||.|.
T Consensus       343 ~~~~g~~i~~~YG~TE~~~  361 (570)
T 3c5e_A          343 RAQTGLDIRESYGQTETGL  361 (570)
T ss_dssp             HHHHSCCCEEEEEETTTEE
T ss_pred             HHHhCCchhhccchhhccc
Confidence            99874  335566777663

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=6e-41  Score=347.97  Aligned_cols=288  Identities=19%  Similarity=0.208  Sum_probs=242.8

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .++.++|..++  .++ |+++|+++.  ++++||+||.++++++|+.|.+ .|+++|++|+|+++|+.++++++|||+++
T Consensus       464 ~~l~~~~~~~~--~~~-p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailka  537 (1304)
T 2vsq_A          464 KPLTYWFKEAV--NAN-PDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLKA  537 (1304)
T ss_dssp             CCHHHHHHHHH--HHC-TTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHH--HhC-CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHHH
Confidence            78999999999  999 999999987  8999999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccC--cceEEeCCCCccccccccCCCCCCCCccccccccCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK--YGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSL  185 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (349)
                      |++++|++|..+.+++.++++++++++++++.+....+..+.  ...+.++..  ....         ...........+
T Consensus       538 G~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~  606 (1304)
T 2vsq_A          538 GAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ--TRFE---------EQASDPATAIDP  606 (1304)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG--GGGG---------SCSSCCCCCCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc--cccc---------cccCCCCCCCCC
Confidence            999999999999999999999999999999987655543221  122222211  0000         011111234578


Q ss_pred             CCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC---CC
Q 045351          186 SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG---KF  262 (349)
Q Consensus       186 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~---~~  262 (349)
                      +++++|+|||||||.||||+++|+++.+. ......++ +.++++++...|++|+.+...++.+|+.|+++++.+   .+
T Consensus       607 ~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~-~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~  684 (1304)
T 2vsq_A          607 NDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMA-FSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLL  684 (1304)
T ss_dssp             TSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSC-CCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTT
T ss_pred             CCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcC-CCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcC
Confidence            99999999999999999999999999976 44555566 688999999999999999999999999999999996   36


Q ss_pred             CHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCc---ccccccccC
Q 045351          263 DFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTV---NRQLCLEFG  338 (349)
Q Consensus       263 ~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~---~~~~~~~~G  338 (349)
                      ++..+.+.|+++++|++.++|++++.|.+..    ...+++||.+++||+++++++.+++.+.++..   +.||.||.+
T Consensus       685 ~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~----~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~  759 (1304)
T 2vsq_A          685 DTERLTDLILQENVNVMFATTALFNLLTDAG----EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGT  759 (1304)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGS
T ss_pred             CHHHHHHHHHHcCCcEEEccHHHHHHHHhhc----hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHh
Confidence            9999999999999999999999999998763    22467899999999999999999999988643   445556654

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=3.2e-41  Score=322.89  Aligned_cols=295  Identities=15%  Similarity=0.141  Sum_probs=233.0

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCC--------CceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHH
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTAS--------RHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVP   98 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~--------~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~   98 (349)
                      .+|+.++|..++  .++ |+++|+++.+.        ++++||+||.++++++|+.|.+ .|+ +||+|+++++|+++++
T Consensus        19 ~~tl~~~l~~~a--~~~-p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~~   93 (562)
T 3ite_A           19 TVPPSHYIETWA--KTH-PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIAF   93 (562)
T ss_dssp             CCCTTHHHHHHH--HHC-TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHHH
T ss_pred             cCCHHHHHHHHH--HHC-CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHHH
Confidence            389999999999  999 99999987521        2789999999999999999998 899 7999999999999999


Q ss_pred             HHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-CcceEEeCCCCccccccccCCCCCCCCcc
Q 045351           99 VLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-KYGTVLLDSPEFEPLSATDSLDYYDDDEE  177 (349)
Q Consensus        99 ~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (349)
                      ++++||+++|++++|+++.++.+++.++++.++++++++++.....+... ...++..+...+......       ....
T Consensus        94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  166 (562)
T 3ite_A           94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLST-------QDTS  166 (562)
T ss_dssp             HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHH-------SCCS
T ss_pred             HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhccc-------cccc
Confidence            99999999999999999999999999999999999999987654433221 111221111111111111       0111


Q ss_pred             ccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcc--------ccCCCCCcEEEEecChhhHhhHHHHHhh
Q 045351          178 RVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAV--------RAARSRPAVVLCTVPYFHSYGFTCCLRS  249 (349)
Q Consensus       178 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~~~~~~l~~~p~~~~~g~~~~~~~  249 (349)
                      .......++++++|+|||||||.||||++||+++...+......        +. +...+++++..|++|..++..++.+
T Consensus       167 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  245 (562)
T 3ite_A          167 DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLE-LGGVGKFLCLASRAFDVHIGEMFLA  245 (562)
T ss_dssp             CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGG-CTTTCEEECCSCTTSTHHHHHHHHH
T ss_pred             ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcc-cCcCceEEEecCchhhhhHHHHHHH
Confidence            11223456788999999999999999999999998877654332        33 5778999999999999999888999


Q ss_pred             hhcCCEEEEcCCCC-HHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcC-
Q 045351          250 LGMGESLVCMGKFD-FGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR-  327 (349)
Q Consensus       250 l~~G~~~v~~~~~~-~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~-  327 (349)
                      +..|+++++.+.+. +..+++.++++++|++.++|++++.+...     ..++++||.+++||+++++++.+++.+.++ 
T Consensus       246 l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~  320 (562)
T 3ite_A          246 WRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-----PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRV  320 (562)
T ss_dssp             HHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----GGGSTTCCEEEEESSCCCHHHHHHHTTCSSC
T ss_pred             HhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----ccccCceEEEEEecCCCCHHHHHHHhhCCCc
Confidence            99999999987654 57788999999999999999998877443     356889999999999999999999988764 


Q ss_pred             -CcccccccccCc
Q 045351          328 -TVNRQLCLEFGA  339 (349)
Q Consensus       328 -~~~~~~~~~~G~  339 (349)
                       ..+.|++||.|.
T Consensus       321 ~~~~~YG~TE~~~  333 (562)
T 3ite_A          321 ALVNVYGPTEVTI  333 (562)
T ss_dssp             EEEEEECCGGGCS
T ss_pred             EEEEeeccchhee
Confidence             234466677654

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=8e-41  Score=315.82  Aligned_cols=284  Identities=19%  Similarity=0.202  Sum_probs=232.2

Q ss_pred             cchhhhhhcccCCCCCCCC-CeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 045351           28 TSVTSYVFSLLESHAPPPD-TTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFS  106 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~-~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~  106 (349)
                      .|+.+.|...+  ..+ |+ ++|+++.  ++++||+||.++++++|+.|..      |++|+++++|+++++++++||++
T Consensus        22 ~tl~~~l~~~a--~~~-p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~------~~~V~i~~~~~~~~~~~~la~~~   90 (505)
T 3nyq_A           22 SSLFPALSPAP--TGA-PADRPALRFG--ERSLTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAALL   90 (505)
T ss_dssp             --CCTTTSSCC--CSG-GGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHHH
T ss_pred             chhHHHHHHHH--HhC-CCCCeEEEEC--CeeeeHHHHHHHHHHHHhhccC------CCEEEEEcCCCHHHHHHHHHHHH
Confidence            68999999999  888 65 9999997  8999999999999999987753      78999999999999999999999


Q ss_pred             cCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccCCCCCCCCccccccccCCC
Q 045351          107 LGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLS  186 (349)
Q Consensus       107 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (349)
                      +|++++|+++..+.+++.++++.+++++++++..............+.++..               ...........++
T Consensus        91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  155 (505)
T 3nyq_A           91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVR---------------ARGAVPEDGADDG  155 (505)
T ss_dssp             HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTT---------------CCCCCCCCCCCTT
T ss_pred             hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccc---------------cccCCCCCCCCCC
Confidence            9999999999999999999999999999999865211100011111111110               0111112345678


Q ss_pred             CcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCCCCHH
Q 045351          187 DPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGKFDFG  265 (349)
Q Consensus       187 ~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~  265 (349)
                      ++++|+|||||||.||||++||+++...+......++ +.+++++++.+|++|.+|+ ..++.++..|+++++.+++++.
T Consensus       156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~  234 (505)
T 3nyq_A          156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ-WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTE  234 (505)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHT-CCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHH
T ss_pred             CeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhC-CCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChH
Confidence            9999999999999999999999999999998888887 7899999999999999998 5788999999999999999999


Q ss_pred             HHHHHHHhhcccEEEechHHHHHHHhcCC--CCCCCCCcchheehccCCCCCHHHHHHHHHHcC--CcccccccccCc
Q 045351          266 RMLKAVEEFRVSHVVLAPPVVLKMARDGG--TMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQLCLEFGA  339 (349)
Q Consensus       266 ~~~~~i~~~~~t~l~~~P~~l~~l~~~~~--~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~~~~~G~  339 (349)
                      .+++.+ ++++|+++++|+++..|.+...  .....+++++|.+++||+++++++.+++.+.++  ..+.|+.||.+.
T Consensus       235 ~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~  311 (505)
T 3nyq_A          235 GAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLM  311 (505)
T ss_dssp             HHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEE
T ss_pred             HHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhccc
Confidence            999999 8899999999999999987430  112345778999999999999999999999874  345566677654

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.92  E-value=1.4e-25  Score=202.23  Aligned_cols=153  Identities=16%  Similarity=0.125  Sum_probs=132.5

Q ss_pred             CCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcCCCCH
Q 045351          185 LSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDF  264 (349)
Q Consensus       185 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~  264 (349)
                      .|++++|+|||||||.||||++||+++.+.+......++ +.++|++++.+|++|++|+..++.+++.|+++++.++.  
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--  112 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALS-LGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--  112 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTT-CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhC-CCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--
Confidence            478999999999999999999999999999998888888 79999999999999999998899999999999998642  


Q ss_pred             HHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHc-CCcccccccccCceee
Q 045351          265 GRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLN-RTVNRQLCLEFGAPII  342 (349)
Q Consensus       265 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~~~~~G~~~i  342 (349)
                      ...++.|+++++|++.++|.+++.|++..  ....++++||.+++||+++++++.+++.+.. +..+.|++||.|..+.
T Consensus       113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~--~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~  189 (358)
T 4gs5_A          113 ANPLAGLDHADFDFVAMVPMQLQSILENS--ATSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVA  189 (358)
T ss_dssp             SCTTTTCSSCCCSEEEECHHHHHHHHHCT--TTGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEE
T ss_pred             ccHHHHHHHhCCeEEEcChHHHHHhhccc--cccccCCcceEEEEcccCCCchheecccccCceEEeccccccccceee
Confidence            23467789999999999999999999874  3456789999999999999999999998742 4455677788765433

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.88  E-value=7.8e-23  Score=185.35  Aligned_cols=155  Identities=17%  Similarity=0.152  Sum_probs=128.1

Q ss_pred             ccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhh---hccccCCCCCcEEEEecCh-hhHhhHHHHHhhhhcCCEEE
Q 045351          182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGG---HAVRAARSRPAVVLCTVPY-FHSYGFTCCLRSLGMGESLV  257 (349)
Q Consensus       182 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~~v  257 (349)
                      ...++++++|+|||||||.||+|.++|+++.....+.   ....+ +.+++++++..|+ +|..|+...+.++..|+ ++
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v  164 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRP-GRPSGNTLAAIPTGPHIVGAINKERALRLGG-MF  164 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTST-TCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CE
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhC-CCCcceEEEecCCCchhhhHHHHHHHHHcCC-EE
Confidence            3467899999999999999999999999999988743   34444 6889999999999 99999987778899999 77


Q ss_pred             EcCCCCHH-----------------------HHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCC
Q 045351          258 CMGKFDFG-----------------------RMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHL  314 (349)
Q Consensus       258 ~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l  314 (349)
                      ++..+++.                       .+++.|+++++|++.++|+++..|++.. .....++++||.+++||+++
T Consensus       165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~-~~~~~~~~~lr~i~~gGe~l  243 (369)
T 3hgu_A          165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRP-EVVLQMKQSLAQITLGGTEL  243 (369)
T ss_dssp             ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCH-HHHHHHHHHCSEEEEESSCC
T ss_pred             ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhh-hhhccccCCeeEEEECCccC
Confidence            77778888                       8888999999999999999999998774 33445678999999999999


Q ss_pred             CHHHHHHHH-HHcCCc---ccccccccCc
Q 045351          315 TLSVIRKYL-QLNRTV---NRQLCLEFGA  339 (349)
Q Consensus       315 ~~~~~~~~~-~~~~~~---~~~~~~~~G~  339 (349)
                      ++++.+++. +.||+.   +.|+++|.|+
T Consensus       244 ~~~~~~~~~~~~~p~~~v~~~YG~TE~~~  272 (369)
T 3hgu_A          244 NLDEIKFIASEILPDCEFSASYGSTSALG  272 (369)
T ss_dssp             CHHHHHHHHHHTCTTSEEEEEEEEGGGTE
T ss_pred             CHHHHHHHHHHhCCCcEEEcccCchhhhc
Confidence            999999999 898643   3355666553

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.87  E-value=4.2e-22  Score=184.58  Aligned_cols=157  Identities=19%  Similarity=0.160  Sum_probs=130.9

Q ss_pred             ccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhh---ccccCCCCCcEEEEecCh-hhHhhHHHHHhhhhcCCEEE
Q 045351          182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGH---AVRAARSRPAVVLCTVPY-FHSYGFTCCLRSLGMGESLV  257 (349)
Q Consensus       182 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~~v  257 (349)
                      ...++++++++|||||||.||+|++||+++........   ..++ +.+++++++..|+ +|..++...+.++..|++++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  164 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAG-ARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVI  164 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTT-CCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcC-CCCCCEEEEcccccccccchHHHHHHHHcCCEEE
Confidence            34568899999999999999999999999987665433   2345 6889999999998 78888877889999999999


Q ss_pred             EcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCC--CcchheehccCCCCCHHHHHHHHHHcC--Cccccc
Q 045351          258 CMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD--LSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQL  333 (349)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~--l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~  333 (349)
                      +.+.+++..+++.|+++++|++.++|+++..|++.. .....+  ++++|.+++||+++++++.+++.+.++  ..+.|+
T Consensus       165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~-~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG  243 (437)
T 2y27_A          165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEI-ERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYG  243 (437)
T ss_dssp             CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEE
T ss_pred             eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHH-HHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCC
Confidence            998889999999999999999999999999998764 322232  578999999999999999999999874  234466


Q ss_pred             ccccCce
Q 045351          334 CLEFGAP  340 (349)
Q Consensus       334 ~~~~G~~  340 (349)
                      ++|.+++
T Consensus       244 ~TE~~g~  250 (437)
T 2y27_A          244 LSEVMGP  250 (437)
T ss_dssp             ETTTTEE
T ss_pred             chhhcCC
Confidence            7776433

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.87  E-value=2.1e-22  Score=186.56  Aligned_cols=156  Identities=18%  Similarity=0.115  Sum_probs=129.9

Q ss_pred             cCC-CCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc---cccCCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEE
Q 045351          183 VSL-SDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA---VRAARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLV  257 (349)
Q Consensus       183 ~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v  257 (349)
                      ..+ +++++++|||||||.||+|++||+++.........   .++ +.+++++++..|+.|..+. ..++.++..|++++
T Consensus        82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVG-IRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTT-CCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcC-CCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            344 78999999999999999999999999877665432   335 6889999999998655554 67788999999999


Q ss_pred             EcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCC--CCcchheehccCCCCCHHHHHHHHHHcC--Cccccc
Q 045351          258 CMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGY--DLSSIEVVASGGAHLTLSVIRKYLQLNR--TVNRQL  333 (349)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~~~~  333 (349)
                      +.+.+++..+++.|+++++|++.++|+++..|++.. .....  ++++||.+++||+++++++.+++.+.|+  ..+.|+
T Consensus       161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG  239 (436)
T 3qov_A          161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVF-QEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFG  239 (436)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH-HHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEE
T ss_pred             eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHH-HHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCc
Confidence            998899999999999999999999999999998864 33333  3789999999999999999999999974  334566


Q ss_pred             ccccCce
Q 045351          334 CLEFGAP  340 (349)
Q Consensus       334 ~~~~G~~  340 (349)
                      +||.++.
T Consensus       240 ~TE~~~~  246 (436)
T 3qov_A          240 MTEMNGP  246 (436)
T ss_dssp             EGGGTEE
T ss_pred             chhhcCC
Confidence            7777443

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.87  E-value=6.4e-22  Score=183.70  Aligned_cols=157  Identities=15%  Similarity=0.126  Sum_probs=130.8

Q ss_pred             ccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc---cccCCCCCcEEEEecCh-hhHhhHHHHHhhhhcCCEEE
Q 045351          182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA---VRAARSRPAVVLCTVPY-FHSYGFTCCLRSLGMGESLV  257 (349)
Q Consensus       182 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~~v  257 (349)
                      ...++++++++|||||||.||+|++||+++.........   .++ +.+++++++..|+ +|..++...+.++..|++++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~  166 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAG-GRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVV  166 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTT-CCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcC-CCCCCEEEEeccCcccccHHHHHHHHHHcCCEEE
Confidence            345688999999999999999999999999876554332   455 6889999999998 67888877889999999999


Q ss_pred             EcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCC--CCcchheehccCCCCCHHHHHHHHHHcCC--ccccc
Q 045351          258 CMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGY--DLSSIEVVASGGAHLTLSVIRKYLQLNRT--VNRQL  333 (349)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~~~~  333 (349)
                      +.+.+++..+++.|+++++|++.++|+++..|++.. .....  .++++|.+++||+++++++.+++.+.++.  .+.|+
T Consensus       167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~-~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG  245 (443)
T 2y4o_A          167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEM-VRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYG  245 (443)
T ss_dssp             CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHH-HHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccC
Confidence            998889999999999999999999999999998764 32233  35799999999999999999999998842  34466


Q ss_pred             ccccCce
Q 045351          334 CLEFGAP  340 (349)
Q Consensus       334 ~~~~G~~  340 (349)
                      +||.+++
T Consensus       246 ~TE~~g~  252 (443)
T 2y4o_A          246 LSEVMGP  252 (443)
T ss_dssp             ETTTTEE
T ss_pred             chhhcCC
Confidence            7776433

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=93.78  E-value=0.49  Score=42.83  Aligned_cols=95  Identities=14%  Similarity=0.049  Sum_probs=73.2

Q ss_pred             CCCeEEEeC---CCC----ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCC--chHHHHHHHHHhcCCeEecCC
Q 045351           45 PDTTALIDT---ASR----HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNS--VRVPVLYLSLFSLGVVVSPCN  115 (349)
Q Consensus        45 ~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~i~  115 (349)
                      ++.++.+..   .+|    -.+|...+...+..+++.+.. .|+.++|++....+.+  ...+...++++..|+.+++.+
T Consensus        89 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  167 (437)
T 2y27_A           89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG  167 (437)
T ss_dssp             GGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred             hhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence            566665532   223    368999998888888888887 8999999999988853  333456788899999999876


Q ss_pred             CCCCHHHHHHHHhhcCCeEEEEcCcc
Q 045351          116 PSCTIPEILRQIHLSKPVIAFATHDT  141 (349)
Q Consensus       116 ~~~~~~~l~~~l~~~~~~~i~~~~~~  141 (349)
                      . .+.+.+...+++.++.+++.....
T Consensus       168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~  192 (437)
T 2y27_A          168 G-GQTEKQVQLIQDFRPDIIMVTPSY  192 (437)
T ss_dssp             S-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred             C-CCHHHHHHHHHHhCCCEEEECHHH
Confidence            5 478888999999999999876543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=93.09  E-value=0.58  Score=42.44  Aligned_cols=95  Identities=13%  Similarity=0.024  Sum_probs=73.1

Q ss_pred             CCCeEEEe---CCCC----ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCC--chHHHHHHHHHhcCCeEecCC
Q 045351           45 PDTTALID---TASR----HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNS--VRVPVLYLSLFSLGVVVSPCN  115 (349)
Q Consensus        45 ~~~~ai~~---~~~~----~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~i~  115 (349)
                      ++.++.+.   +.+|    -.+|...+...+..+++.+.. .|+.++|++....+-+  ...+...++++..|+.+++.+
T Consensus        91 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  169 (443)
T 2y4o_A           91 REQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS  169 (443)
T ss_dssp             GGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred             hhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence            56666443   2233    368999998888888888887 8999999999988864  333556788889999999886


Q ss_pred             CCCCHHHHHHHHhhcCCeEEEEcCcc
Q 045351          116 PSCTIPEILRQIHLSKPVIAFATHDT  141 (349)
Q Consensus       116 ~~~~~~~l~~~l~~~~~~~i~~~~~~  141 (349)
                      .. ..+.+...+++.++.+++.....
T Consensus       170 ~~-~~~~~~~~i~~~~~t~l~~~Ps~  194 (443)
T 2y4o_A          170 GG-QTEKQVQLIRDFEPKIILVTPSY  194 (443)
T ss_dssp             SC-CHHHHHHHHHHHCCSEEEECHHH
T ss_pred             CC-CHHHHHHHHHHhCCcEEEECHHH
Confidence            54 78888899999999998876543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=91.90  E-value=0.97  Score=40.85  Aligned_cols=94  Identities=16%  Similarity=0.012  Sum_probs=73.6

Q ss_pred             CCeEEEeCC---CC----ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCC--chHHHHHHHHHhcCCeEecCCC
Q 045351           46 DTTALIDTA---SR----HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNS--VRVPVLYLSLFSLGVVVSPCNP  116 (349)
Q Consensus        46 ~~~ai~~~~---~~----~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~i~~  116 (349)
                      +.+|.+...   +|    -.+|.+.+...+..+++.+.. .++.++|++....+-+  ...+..+++++..|+.+++.+.
T Consensus        86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~  164 (436)
T 3qov_A           86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA  164 (436)
T ss_dssp             HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred             CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence            677765432   22    468999999988888888887 8999999999998753  3345567888999999998765


Q ss_pred             CCCHHHHHHHHhhcCCeEEEEcCcc
Q 045351          117 SCTIPEILRQIHLSKPVIAFATHDT  141 (349)
Q Consensus       117 ~~~~~~l~~~l~~~~~~~i~~~~~~  141 (349)
                      . ..+.+...+++.++.+++.....
T Consensus       165 ~-~~~~~~~~i~~~~~t~~~~~P~~  188 (436)
T 3qov_A          165 G-NSKRQIKFISDFKTTALHAIPSY  188 (436)
T ss_dssp             C-CHHHHHHHHHHHTCCEEECCHHH
T ss_pred             C-CHHHHHHHHHHHCCCEEEECHHH
Confidence            4 67888899999999998877653

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=85.12  E-value=3.4  Score=36.21  Aligned_cols=84  Identities=5%  Similarity=-0.147  Sum_probs=61.6

Q ss_pred             ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCc--hHHHHHHHHHhcCCeEecCCCCCCHH-------------
Q 045351           57 HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSV--RVPVLYLSLFSLGVVVSPCNPSCTIP-------------  121 (349)
Q Consensus        57 ~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~i~~~~~~~-------------  121 (349)
                      ..+|.+.+...+...++.+.. .|+.++|+++...+-+.  ..+...++++..|+.+++.+  ..+.             
T Consensus       109 v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~  185 (369)
T 3hgu_A          109 VVAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTAT  185 (369)
T ss_dssp             EEECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHH
T ss_pred             EEECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhh
Confidence            467888888888877777887 89999999999988632  33444556688999666653  3344             


Q ss_pred             ----------HHHHHHhhcCCeEEEEcCcccc
Q 045351          122 ----------EILRQIHLSKPVIAFATHDTAH  143 (349)
Q Consensus       122 ----------~l~~~l~~~~~~~i~~~~~~~~  143 (349)
                                ++...+++.++.+++.......
T Consensus       186 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~  217 (369)
T 3hgu_A          186 VRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLR  217 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCEEEEEECHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHH
Confidence                      6666889999999888765443

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=82.31  E-value=8.8  Score=35.71  Aligned_cols=95  Identities=12%  Similarity=0.020  Sum_probs=69.4

Q ss_pred             CCCeEEEeCCCC-------ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHH--HHHHHHhcCCeEecCC
Q 045351           45 PDTTALIDTASR-------HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPV--LYLSLFSLGVVVSPCN  115 (349)
Q Consensus        45 ~~~~ai~~~~~~-------~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~--~~lA~~~~G~~~v~i~  115 (349)
                      ++.+|++....|       -.+|.+.+...+......+.. .++.++|+++...|-...+-.  .+++.+ .|+..+..+
T Consensus       191 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~  268 (548)
T 2d1s_A          191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT  268 (548)
T ss_dssp             TTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred             CCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence            377787754222       468999988776666555444 688999999988886654432  356777 999888775


Q ss_pred             CCCCHHHHHHHHhhcCCeEEEEcCccc
Q 045351          116 PSCTIPEILRQIHLSKPVIAFATHDTA  142 (349)
Q Consensus       116 ~~~~~~~l~~~l~~~~~~~i~~~~~~~  142 (349)
                       ...++.+...+++.++.+++......
T Consensus       269 -~~~~~~~~~~i~~~~~t~~~~~P~~~  294 (548)
T 2d1s_A          269 -KFDEETFLKTLQDYKCTSVILVPTLF  294 (548)
T ss_dssp             -CCCHHHHHHHHHHTTEEEEEECHHHH
T ss_pred             -CCCHHHHHHHHHHcCCcEEEecHHHH
Confidence             56788999999999999998875443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	349
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	5e-40
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	5e-34
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-29
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-27
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-19
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	9e-19
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	4e-18

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  147 bits (371), Expect = 5e-40
 Identities = 63/329 (19%), Positives = 111/329 (33%), Gaps = 34/329 (10%)

Query: 29  SVTSYVFSLLESHAPP-PDTTALI----DTASRHRILYPDLTLRIKTLAYSLKTKYKLSK 83
              +   + L+ H     D TA+I    DT+    I Y +L   +   A +L     + K
Sbjct: 69  GTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLL-DLGIKK 127

Query: 84  YDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH 143
            DV  +         V  L+   +G V S      +   +   I  S   +     +   
Sbjct: 128 GDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVR 187

Query: 144 ------------------KIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDE----ERVRV 181
                              +  +++  VL  +           L + D  E    E    
Sbjct: 188 AGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPE 247

Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSY 241
           +++  DP  ILY+SG+TG  KG L T    +   A             +  CT       
Sbjct: 248 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 307

Query: 242 GFTCCLRS-LGMGESLVCM----GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGG-T 295
           G +  L   L  G + +            RM + V++ +V+ +  AP  +  +  +G   
Sbjct: 308 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 367

Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
           ++G D SS+ ++ S G  +       Y +
Sbjct: 368 IEGTDRSSLRILGSVGEPINPEAWEWYWK 396

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (326), Expect = 5e-34
 Identities = 48/328 (14%), Positives = 105/328 (32%), Gaps = 32/328 (9%)

Query: 29  SVTSYVFSLLESHAP-PPDTTALI----DTASRHRILYPDLTLRIKTLAYSLKTKYKLSK 83
              +  ++ ++ HA   P+  A+I    +    + I Y +L   +  +A  L     + K
Sbjct: 56  GQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRK 115

Query: 84  YDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAH 143
            D   +         +  L++  +G + S      +   +  +I+     +   T ++  
Sbjct: 116 GDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNR 175

Query: 144 KIPQLKYGTVLLDSPE---------------------FEPLSATDSLDYYDDDEERVRVS 182
               ++   ++ D+                         P     + +            
Sbjct: 176 GGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTP 235

Query: 183 VSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYG 242
           V   DP  +LY+SG+TG  KG   +    +              +  V           G
Sbjct: 236 VDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITG 295

Query: 243 FT-CCLRSLGMGESLVCMGKF----DFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-GTM 296
            T      L  G + +         ++ R    ++E +V+   +AP  +  + R G   +
Sbjct: 296 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI 355

Query: 297 DGYDLSSIEVVASGGAHLTLSVIRKYLQ 324
           + + L S+  + S G  +   V   Y +
Sbjct: 356 ENHSLKSLRCLGSVGEPIAAEVWEWYSE 383

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  116 bits (292), Expect = 1e-29
 Identities = 68/329 (20%), Positives = 126/329 (38%), Gaps = 9/329 (2%)

Query: 22  AFPPETTSVTSYVFSLLESHAP-PPDTTALI--DTASRHRILYPDLTLRIKTLAYSLKTK 78
           AFP         ++  LE  A        +    T   HR  Y ++  R + L   L+  
Sbjct: 1   AFPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLR-A 59

Query: 79  YKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFAT 138
             +   D    L  N  R    Y ++  +G V+   NP  +  EI   ++ ++  +    
Sbjct: 60  LGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFD 119

Query: 139 HDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDE--ERVRVSVSLSDPAAILYSSG 196
            +    +  ++     +         A +    Y++    E   V V       + Y++G
Sbjct: 120 PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTG 179

Query: 197 TTGMVKGALLTQRNLVA-AVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGES 255
           TTG+ KG + + R LV  ++A       A S   VVL  VP FH   +     +  +G  
Sbjct: 180 TTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAK 239

Query: 256 LVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHL 314
            V  G + D   +++  +   V+     P V L +A D     G+ L ++  +  GG+  
Sbjct: 240 QVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALA-DYLESTGHRLKTLRRLVVGGSAA 298

Query: 315 TLSVIRKYLQLNRTVNRQLCLEFGAPIIS 343
             S+I ++ ++   V +   L   +P++ 
Sbjct: 299 PRSLIARFERMGVEVRQGYGLTETSPVVV 327

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  110 bits (275), Expect = 2e-27
 Identities = 70/321 (21%), Positives = 135/321 (42%), Gaps = 17/321 (5%)

Query: 19  PSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTK 78
           P+  +P E  +    +   ++ +A  P T A  D      I Y +       LA ++K +
Sbjct: 8   PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMK-R 66

Query: 79  YKLSKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFAT 138
           Y L+      + S+NS++  +  L    +GV V+P N      E+L  +++S+P + F +
Sbjct: 67  YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 126

Query: 139 HDTAHKI-------PQLKYGTVLLDSPEFEPLSATDSLDY------YDDDEERVRVSVSL 185
                KI       P ++   ++    +++   +  +         +++ +         
Sbjct: 127 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 186

Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLVA--AVAGGHAVRAARSRPAVVLCTVPYFHSYGF 243
              A I+ SSG+TG+ KG  L  R      + A              +L  VP+ H +G 
Sbjct: 187 KTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 246

Query: 244 TCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSS 303
              L  L  G  +V M +F+    L++++++++   +L P +    A+       YDLS+
Sbjct: 247 FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSN 305

Query: 304 IEVVASGGAHLTLSVIRKYLQ 324
           +  +ASGGA L+  V     +
Sbjct: 306 LHEIASGGAPLSKEVGEAVAK 326

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 86.9 bits (214), Expect = 2e-19
 Identities = 43/303 (14%), Positives = 103/303 (33%), Gaps = 23/303 (7%)

Query: 23  FPPETTSVTSYVFSLLESHAP-PPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKL 81
           +P + T     +  L E      P+  A++      ++ Y +L ++   LA     +  +
Sbjct: 19  YPRDKT-----IHQLFEEQVSKRPNNVAIVC--ENEQLTYHELNVKANQLARIFI-EKGI 70

Query: 82  SKYDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDT 141
            K  +  ++ + S+ + +  L++   G    P +       I   +  S+  +       
Sbjct: 71  GKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHL 130

Query: 142 AHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMV 201
            H I  +++   +            +       +   + V    +D A ++Y+SGTTG  
Sbjct: 131 VHLIHNIQFNGQVEI---------FEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNP 181

Query: 202 KGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGK 261
           KG +L  + +               +   +                 +L  G SL  + K
Sbjct: 182 KGTMLEHKGISNLKVFFENSLNVTEKD-RIGQFASISFDASVWEMFMALLTGASLYIILK 240

Query: 262 FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRK 321
                 +K  +      + +       +      +D   + SI+ + + G+  + S++ K
Sbjct: 241 DTINDFVKFEQYINQKEITVITLPPTYVVH----LDPERILSIQTLITAGSATSPSLVNK 296

Query: 322 YLQ 324
           + +
Sbjct: 297 WKE 299

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 85.0 bits (209), Expect = 9e-19
 Identities = 54/293 (18%), Positives = 96/293 (32%), Gaps = 11/293 (3%)

Query: 37  LLESHAP-PPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSV 95
           LL   A    D  A+          Y +L  R   LA   + K  + + D   +   N  
Sbjct: 30  LLRDRAAKYGDRIAITC--GNTHWSYRELDTRADRLAAGFQ-KLGIQQKDRVVVQLPNIK 86

Query: 96  RVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLL 155
               +  +LF LG +     PS    EI      ++          +    +     V  
Sbjct: 87  EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS 146

Query: 156 DSPEFEPLSATDSLDYYDDDEERV-----RVSVSLSDPAAILYSSGTTGMVKGALLTQRN 210
             P  + +      + +   E+          V  SD A +  S G+TG+ K    T  +
Sbjct: 147 KLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDD 206

Query: 211 LVAAVA-GGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLK 269
            + ++           S   +    + + +       L  L  G  +V            
Sbjct: 207 YIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFP 266

Query: 270 AVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKY 322
            +E  +V+   L PP+ + +  D  +    DLSS++V+  GGA  +    R+ 
Sbjct: 267 LIEREKVTITALVPPLAM-VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV 318

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 83.2 bits (204), Expect = 4e-18
 Identities = 70/297 (23%), Positives = 117/297 (39%), Gaps = 12/297 (4%)

Query: 34  VFSLLESHAPP-PDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQ 92
           V  +L   A   PD  AL   A   R+ + +L  R++ +A  L     L       +++ 
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLH-ADGLRPQQRVAVVAP 62

Query: 93  NSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKP--VIAFATHDTAHKIPQLKY 150
           NS  V +  L+L  LG V +  NP     E+   I   +    +       A  I Q   
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122

Query: 151 GTVLLDSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRN 210
           G  ++   +        S     +D +R       + PA I Y+SGTTG+ K A++ QR 
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRA 177

Query: 211 LVA-AVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGE-SLVCMGKFDFGRML 268
             +  +     V     R  VVL  +P +H  GF   L +    + + V + +F     L
Sbjct: 178 AESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237

Query: 269 KAVEEFRVSHVVLAPPVVLKMARDGGTMD-GYDLSSIEVVASGGAHLTLSVIRKYLQ 324
           + V++ +V+ +   P  +  +A           L S+  V   GA +  +V+    Q
Sbjct: 238 QLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQ 294

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	349
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	86.9
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	80.24

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.9e-44  Score=345.93  Aligned_cols=310  Identities=19%  Similarity=0.183  Sum_probs=240.3

Q ss_pred             cchhhhhh-cccCCCCCCCCCeEEEeCC----CCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHH
Q 045351           28 TSVTSYVF-SLLESHAPPPDTTALIDTA----SRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYL  102 (349)
Q Consensus        28 ~tl~~~l~-~~~~~~~~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~l  102 (349)
                      +|+.+.+. .++  +.+ ||++|+++..    +.+++||+||.+++.++|+.|++ .|+++||+|+++++|++++++++|
T Consensus        71 ~N~~~n~ldrh~--~~~-~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~-~Gv~~Gd~V~i~~~n~~e~iv~~l  146 (643)
T d1pg4a_          71 LNLAANCLDRHL--QEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAML  146 (643)
T ss_dssp             ECHHHHHTGGGH--HHH-TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             hhHHHHHHHHHH--HhC-CCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecccchHHHHHHH
Confidence            66666544 556  667 9999999542    23789999999999999999999 999999999999999999999999


Q ss_pred             HHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc----------------cC-cceEEeCCCCcccccc
Q 045351          103 SLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ----------------LK-YGTVLLDSPEFEPLSA  165 (349)
Q Consensus       103 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~  165 (349)
                      ||+++|++++|+++..+.+++.++++.++++++|+++........                .. ..++.+..........
T Consensus       147 A~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~  226 (643)
T d1pg4a_         147 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ  226 (643)
T ss_dssp             HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCC
T ss_pred             HHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccc
Confidence            999999999999999999999999999999999998754322111                01 1123332211100000


Q ss_pred             ccC-----CCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhh-hccccCCCCCcEEEEecChhh
Q 045351          166 TDS-----LDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGG-HAVRAARSRPAVVLCTVPYFH  239 (349)
Q Consensus       166 ~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~l~~~p~~~  239 (349)
                      ...     ................++++++|+|||||||.||||++||++++...... ...++ +.++|++++..|++|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~-~~~~d~~~~~~p~~~  305 (643)
T d1pg4a_         227 EGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD-YHPGDIYWCTADVGW  305 (643)
T ss_dssp             BTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTT-CCTTCEEEECSCTTS
T ss_pred             cccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhC-CCCCCEEEEeCChHH
Confidence            000     00000122223345678999999999999999999999999977665543 44455 789999999999999


Q ss_pred             HhhH-HHHHhhhhcCCEEEEcCC----CCHHHHHHHHHhhcccEEEechHHHHHHHhcC-CCCCCCCCcchheehccCCC
Q 045351          240 SYGF-TCCLRSLGMGESLVCMGK----FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-GTMDGYDLSSIEVVASGGAH  313 (349)
Q Consensus       240 ~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~-~~~~~~~l~~lr~i~~gG~~  313 (349)
                      ++|+ ..++.+|+.|+++++.+.    +++..+++.++++++|++.++|++++.|++.. ......++++||.+++||++
T Consensus       306 ~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~p  385 (643)
T d1pg4a_         306 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP  385 (643)
T ss_dssp             HHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCC
Confidence            9998 456789999999999753    48999999999999999999999999998764 12356779999999999999


Q ss_pred             CCHHHHHHHHHHcCC-----cccccccccCceee
Q 045351          314 LTLSVIRKYLQLNRT-----VNRQLCLEFGAPII  342 (349)
Q Consensus       314 l~~~~~~~~~~~~~~-----~~~~~~~~~G~~~i  342 (349)
                      +++++++++.+.++.     .+.|+.||.|+.++
T Consensus       386 l~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~  419 (643)
T d1pg4a_         386 INPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI  419 (643)
T ss_dssp             CCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred             CCHHHHHHHHHHhCCCCceEEEeechhhccceEE
Confidence            999999999999853     23456677765444

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-43  Score=338.44  Aligned_cols=310  Identities=15%  Similarity=0.152  Sum_probs=238.7

Q ss_pred             cch-hhhhhcccCCCCCCCCCeEEEeC----CCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHH
Q 045351           28 TSV-TSYVFSLLESHAPPPDTTALIDT----ASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYL  102 (349)
Q Consensus        28 ~tl-~~~l~~~~~~~~~~~~~~ai~~~----~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~l  102 (349)
                      +|+ .++|+.++  +++ ||++|+++.    .+++++||+||.+++.++|+.|+.++|+++||+|+++++|++++++++|
T Consensus        58 lN~~~n~ldr~a--~~~-pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~l  134 (640)
T d1ry2a_          58 LNACYNCVDRHA--LKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL  134 (640)
T ss_dssp             ECHHHHHTHHHH--TTC-TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred             hhHHHHHHHHHH--hhC-CCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            455 45566678  788 999999853    1347899999999999999999732899999999999999999999999


Q ss_pred             HHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc--------------Ccc-eEEeCCCCcccccccc
Q 045351          103 SLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL--------------KYG-TVLLDSPEFEPLSATD  167 (349)
Q Consensus       103 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~  167 (349)
                      ||+++|++++|+++..+.+++.++++.+++++++++..........              ... ................
T Consensus       135 A~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (640)
T d1ry2a_         135 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHA  214 (640)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCS
T ss_pred             HhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccc
Confidence            9999999999999999999999999999999999987543322110              001 1111110000000000


Q ss_pred             ------CCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhc-cccCCCCCcEEEEecChhhH
Q 045351          168 ------SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHA-VRAARSRPAVVLCTVPYFHS  240 (349)
Q Consensus       168 ------~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~  240 (349)
                            .................++++++|+|||||||.||||+++|++++........ .+. +.+++++++.+|++|+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~-~~~~d~~l~~~pl~~~  293 (640)
T d1ry2a_         215 PRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFD-THQEDVFFTAGDIGWI  293 (640)
T ss_dssp             SSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSC-CCSSCEEEECSCTTSH
T ss_pred             cccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcC-CCcccceeeccchhhh
Confidence                  00000012222333566789999999999999999999999998887655544 344 7899999999999999


Q ss_pred             hhH-HHHHhhhhcCCEEEEcCCC----CHHHHHHHHHhhcccEEEechHHHHHHHhcC-CCCCCCCCcchheehccCCCC
Q 045351          241 YGF-TCCLRSLGMGESLVCMGKF----DFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-GTMDGYDLSSIEVVASGGAHL  314 (349)
Q Consensus       241 ~g~-~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~-~~~~~~~l~~lr~i~~gG~~l  314 (349)
                      +|+ ..++.+|+.|+++++.+.+    ++..+++.|+++++|++.++|.+++.|.+.. ......++++||.+.+||+++
T Consensus       294 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l  373 (640)
T d1ry2a_         294 TGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPI  373 (640)
T ss_dssp             HHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCC
T ss_pred             hhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccC
Confidence            998 5677899999999988543    8899999999999999999999999998764 123567899999999999999


Q ss_pred             CHHHHHHHHHHcCCc-----ccccccccCcee
Q 045351          315 TLSVIRKYLQLNRTV-----NRQLCLEFGAPI  341 (349)
Q Consensus       315 ~~~~~~~~~~~~~~~-----~~~~~~~~G~~~  341 (349)
                      ++++++++.+.++..     ..++.+|.|...
T Consensus       374 ~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~  405 (640)
T d1ry2a_         374 AAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL  405 (640)
T ss_dssp             CHHHHHHHHHTTSCSSSCEEECBCCTTTCSCS
T ss_pred             cHHHHHHHHHhcCCCcceEEeeeccccccccc
Confidence            999999999998643     334556665433

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.3e-41  Score=317.93  Aligned_cols=306  Identities=19%  Similarity=0.205  Sum_probs=247.3

Q ss_pred             CcchhhhhhcccCCCCCCCCCeEEEeCCCC--ceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHH
Q 045351           27 TTSVTSYVFSLLESHAPPPDTTALIDTASR--HRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSL  104 (349)
Q Consensus        27 ~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~--~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~  104 (349)
                      +.||.++|++.+  +++ ||++|+++..++  +++||+||++++.++|+.|.+ .|+++||+|+++++|++++++++|||
T Consensus        10 ~~~l~~~l~~~a--~~~-pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~   85 (534)
T d1v25a_          10 ELNLWDFLERAA--ALF-GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFAV   85 (534)
T ss_dssp             CCCTHHHHHHHH--HHS-TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH--HHc-CCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHH-CCcCCCCEEEEEeCCCHHHHHHHHHH
Confidence            479999999999  999 999999986554  579999999999999999999 99999999999999999999999999


Q ss_pred             HhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc-----CcceEEe-CCCCccccccccCCCCCCCCccc
Q 045351          105 FSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL-----KYGTVLL-DSPEFEPLSATDSLDYYDDDEER  178 (349)
Q Consensus       105 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  178 (349)
                      +++|++++|+++.++.+++.++++.++++.++++..........     ....... ..............    .....
T Consensus        86 ~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  161 (534)
T d1v25a_          86 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEA----LGEEA  161 (534)
T ss_dssp             HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHH----CCSCC
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccccccccccc----ccccc
Confidence            99999999999999999999999999999999988765544331     1112222 21111111111100    11122


Q ss_pred             cccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhh--hhccccCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEE
Q 045351          179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAG--GHAVRAARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESL  256 (349)
Q Consensus       179 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~--~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~  256 (349)
                      ......++++++|+|||||||.||||+++|++++.....  ...... ....+++++.+|++|.+++...+..+..|+++
T Consensus       162 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~  240 (534)
T d1v25a_         162 DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA-LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQ  240 (534)
T ss_dssp             CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTC-CCTTCEEEECSCTTSHHHHTHHHHHHHHTCEE
T ss_pred             cccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccc-cccccccccccchhhhccccccceeeeeccee
Confidence            233566788999999999999999999999999876544  333334 57889999999999999997777888888887


Q ss_pred             EEc-CCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCC-cccccc
Q 045351          257 VCM-GKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRT-VNRQLC  334 (349)
Q Consensus       257 v~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~-~~~~~~  334 (349)
                      ++. +.+++..+...+.++++|++.++|.++..+.... .....++++||.+++||++++++..+++.+..+. ...|+.
T Consensus       241 v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~-~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~  319 (534)
T d1v25a_         241 VLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYL-ESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGL  319 (534)
T ss_dssp             EECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHH-HHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEEC
T ss_pred             eeccccccccccchhhhhccccccccCchhhhhhhhhh-ccccccccceeEEEEecCCCCHHHHHHHHHhCCeeeeeccc
Confidence            777 5689999999999999999999999999999876 6667789999999999999999999998865432 244567


Q ss_pred             cccCceee
Q 045351          335 LEFGAPII  342 (349)
Q Consensus       335 ~~~G~~~i  342 (349)
                      +|.|..+.
T Consensus       320 te~~~~~~  327 (534)
T d1v25a_         320 TETSPVVV  327 (534)
T ss_dssp             GGGSSEEE
T ss_pred             ccccccee
Confidence            77776554

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.3e-40  Score=314.73  Aligned_cols=324  Identities=22%  Similarity=0.301  Sum_probs=253.2

Q ss_pred             ccCCCCCCCCCCCcchhhhhhcccCC-CCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCC
Q 045351           15 HSLRPSIAFPPETTSVTSYVFSLLES-HAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQN   93 (349)
Q Consensus        15 ~~~~~~~~~~~~~~tl~~~l~~~~~~-~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n   93 (349)
                      ++|.|..+++.  .|+.+.|.+.+.+ ... |+++|+++...++++||+||.+++.++|+.|++ .|+++||+|+++++|
T Consensus         6 ~~p~p~~p~~~--~t~~~~l~~~~~~~~~~-P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~-~Gi~~Gd~Vai~~~n   81 (541)
T d1lcia_           6 KGPAPFYPLED--GTAGEQLHKAMKRYALV-PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVVCSEN   81 (541)
T ss_dssp             ECCCCSSCCCS--SCHHHHHHHHHHHHHTS-TTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECSS
T ss_pred             cCCCCCCCCCC--CCHHHHHHHHHHhhCCC-CCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHH-cCcCCCCEEEEEeCC
Confidence            45556556665  8988888876621 224 677899988778899999999999999999998 999999999999999


Q ss_pred             CchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccccccc------CcceEEeCCCC----cccc
Q 045351           94 SVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL------KYGTVLLDSPE----FEPL  163 (349)
Q Consensus        94 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~  163 (349)
                      +++++++++||+++|++++|+++..+.+++.++++.++++++|++++..+.+.+.      ...++..+...    +...
T Consensus        82 s~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (541)
T d1lcia_          82 SLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSM  161 (541)
T ss_dssp             CSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEH
T ss_pred             CHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchh
Confidence            9999999999999999999999999999999999999999999998776554321      11233333211    1111


Q ss_pred             cc---ccCCCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc--CCCCCcEEEEecChh
Q 045351          164 SA---TDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA--ARSRPAVVLCTVPYF  238 (349)
Q Consensus       164 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~l~~~p~~  238 (349)
                      ..   ...................++++++|+|||||||.||+|++||++++...........  ...+++++++.+|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  241 (541)
T d1lcia_         162 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH  241 (541)
T ss_dssp             HHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred             hhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccc
Confidence            10   0000000011122233456688999999999999999999999999887665444332  257789999999999


Q ss_pred             hHhhHHHHHhhhhcCCEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHH
Q 045351          239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSV  318 (349)
Q Consensus       239 ~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~  318 (349)
                      |.+++...+..+..|+..+.....+.......+.++++|.+.++|.++..+.... .....++++++.+.+||++++++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~-~~~~~~~~~l~~v~~gG~~~~~~~  320 (541)
T d1lcia_         242 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST-LIDKYDLSNLHEIASGGAPLSKEV  320 (541)
T ss_dssp             SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCS-CGGGSCCTTCCEEECTTCCCCHHH
T ss_pred             ccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccc-cccccccccceEEEeccccccccc
Confidence            9999988889999999999999999999999999999999999999999999988 777888999999999999999999


Q ss_pred             HHHHHHHcCCc---ccccccccCceeee
Q 045351          319 IRKYLQLNRTV---NRQLCLEFGAPIIS  343 (349)
Q Consensus       319 ~~~~~~~~~~~---~~~~~~~~G~~~i~  343 (349)
                      .+++.++++..   ..|++||.|+.++.
T Consensus       321 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~  348 (541)
T d1lcia_         321 GEAVAKRFHLPGIRQGYGLTETTSAILI  348 (541)
T ss_dssp             HHHHHHHTTCSCCBCEECCGGGSSCSEE
T ss_pred             ccccccccCCceeeecCCccccCceEEe
Confidence            99999998643   34667787654443

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.2e-40  Score=314.75  Aligned_cols=292  Identities=21%  Similarity=0.195  Sum_probs=245.8

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .||.++|.+++  +++ ||++|++++  ++++||+||++++.++|+.|.+ .|+++||+|+++++|++++++++|||+++
T Consensus        25 ~tl~~~l~~~a--~~~-pd~~Al~~~--~~~~Ty~el~~~v~~~A~~L~~-~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~   98 (536)
T d1mdba_          25 ETFGDLLRDRA--AKY-GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRL   98 (536)
T ss_dssp             CCHHHHHHHHH--HHH-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH--HHC-CCCeEEEEC--CEeEcHHHHHHHHHHHHHHHHH-cCcCCcCEEEEEeCCCHHHHHHHHHHHHh
Confidence            69999999999  999 999999997  7999999999999999999998 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccc------------cCcceEEeCCCCccccccccCCCCCCCC
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQ------------LKYGTVLLDSPEFEPLSATDSLDYYDDD  175 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (349)
                      |++++|+++..+.+++.++++.++++++++++........            ....+.......+..+...       ..
T Consensus        99 G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  171 (536)
T d1mdba_          99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDL-------HT  171 (536)
T ss_dssp             TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGC-------CC
T ss_pred             CcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhhc-------cc
Confidence            9999999999999999999999999999998754332211            1111111112222222111       11


Q ss_pred             ccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhH--HHHHhhhhcC
Q 045351          176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGF--TCCLRSLGMG  253 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~--~~~~~~l~~G  253 (349)
                      .........++++++|+|||||||.||||++||+++...+......+. +.+++++++..|++|.+++  ......+..|
T Consensus       172 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g  250 (536)
T d1mdba_         172 EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHSTVYLAALPMAHNYPLSSPGVLGVLYAG  250 (536)
T ss_dssp             CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT-CCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred             CCcCCCccCccchHHhhhcccccccceecccccccccccccccccccc-cccccccccccccccccceeecccccccccc
Confidence            112223567889999999999999999999999999999998888888 7999999999999999998  3555666667


Q ss_pred             CEEEEcCCCCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCccccc
Q 045351          254 ESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQL  333 (349)
Q Consensus       254 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~  333 (349)
                      .+++..+.+++..++..+++++++.+..+|..+..+.... ......+++++.+++||+++++...+++.+.++......
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~  329 (536)
T d1mdba_         251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAA-SSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQV  329 (536)
T ss_dssp             CEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH-HHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEE
T ss_pred             ccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhc-cccccccCcceeEEEeccccccccccchhhccCceeeec
Confidence            8888888899999999999999999999999999988876 666777899999999999999999999999997655444


Q ss_pred             c
Q 045351          334 C  334 (349)
Q Consensus       334 ~  334 (349)
                      +
T Consensus       330 ~  330 (536)
T d1mdba_         330 F  330 (536)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=1.2e-40  Score=313.35  Aligned_cols=310  Identities=16%  Similarity=0.180  Sum_probs=251.5

Q ss_pred             ccceeeccCCCCCCCCCCCcchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEE
Q 045351            9 SETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAF   88 (349)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~   88 (349)
                      .....|......-++|. +.||.++|++++  +++ ||++|++++  ++++||+||.+++.++|+.|++ +|+++||+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~-~~tl~~l~~~~a--~~~-Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~Va   77 (514)
T d1amua_           5 EEQYLFAVNNTKAEYPR-DKTIHQLFEEQV--SKR-PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVG   77 (514)
T ss_dssp             HHHHHHHTTCCCCCCCT-TCCHHHHHHHHH--HHC-TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEE
T ss_pred             HHHHHHHhcCCCCCCCC-CCcHHHHHHHHH--HhC-CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHH-cCcCCcCEEE
Confidence            33444445555556665 689999999999  999 999999997  8999999999999999999999 9999999999


Q ss_pred             EEcCCCchHHHHHHHHHhcCCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCcccccccccCcceEEeCCCCccccccccC
Q 045351           89 LLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDS  168 (349)
Q Consensus        89 i~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (349)
                      ++++|+++|++++|||+++|++++|+++..+.+++.++++.+++++++++....+.+...................    
T Consensus        78 i~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  153 (514)
T d1amua_          78 IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI----  153 (514)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTT----
T ss_pred             EEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccccccccccccccc----
Confidence            9999999999999999999999999999999999999999999999999988766655432221111111111101    


Q ss_pred             CCCCCCCccccccccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhccccCCCCCcEEEEecChhhHhhHHHHHh
Q 045351          169 LDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRAARSRPAVVLCTVPYFHSYGFTCCLR  248 (349)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~  248 (349)
                           ........+..++++++|+|||||||.||+|.+||.++..........+. ....+++++..|++|.+++..++.
T Consensus       154 -----~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~~~  227 (514)
T d1amua_         154 -----REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN-VTEKDRIGQFASISFDASVWEMFM  227 (514)
T ss_dssp             -----SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSC-CCTTCEEEECSCTTSTHHHHHHHH
T ss_pred             -----cccccCCCCCCcccceEEEEccCCCCCccccccccccccccccccccccc-ccccccccceeccccccccccccc
Confidence                 11112223456789999999999999999999999999999999888888 789999999999999999999999


Q ss_pred             hhhcCCEEEEcCC---CCHHHHHHHHHhhcccEEEechHHHHHHHhcCCCCCCCCCcchheehccCCCCCHHHHHHHHHH
Q 045351          249 SLGMGESLVCMGK---FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL  325 (349)
Q Consensus       249 ~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~  325 (349)
                      ++..|+++++...   .+....++.+..+.++.+..+|....       .....++++++.+++||+++++++.+++.+.
T Consensus       228 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~  300 (514)
T d1amua_         228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV-------HLDPERILSIQTLITAGSATSPSLVNKWKEK  300 (514)
T ss_dssp             HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHT-------TSCTTTCCSCSEEEEESSCCCHHHHHHHTTT
T ss_pred             cccccccccccccccccchhhhhhhhhhhhcccccceeeecc-------cccccccccccEEEEecccCCHHHhhhhccc
Confidence            9999999998853   47788899999999999999987644       2334568899999999999999999999888


Q ss_pred             cCCcccccccccCceee
Q 045351          326 NRTVNRQLCLEFGAPII  342 (349)
Q Consensus       326 ~~~~~~~~~~~~G~~~i  342 (349)
                      ++....|+++|.|+...
T Consensus       301 ~~~~~~yG~tE~~~~~~  317 (514)
T d1amua_         301 VTYINAYGPTETTICAT  317 (514)
T ss_dssp             SEEEEEECCGGGSSCSE
T ss_pred             eeEEEeeccccCceeee
Confidence            77777778888776443

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.5e-38  Score=297.21  Aligned_cols=302  Identities=22%  Similarity=0.232  Sum_probs=243.2

Q ss_pred             cchhhhhhcccCCCCCCCCCeEEEeCCCCceeeHHHHHHHHHHHHHHHhhhcCCCCCCEEEEEcCCCchHHHHHHHHHhc
Q 045351           28 TSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIKTLAYSLKTKYKLSKYDVAFLLSQNSVRVPVLYLSLFSL  107 (349)
Q Consensus        28 ~tl~~~l~~~~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~  107 (349)
                      .|+.++|.+++  +++ ||++|+++.++++++||+||.+++.++|++|++ .|+++||+|+++++|++++++++|||+++
T Consensus         2 ~ti~~~l~~~a--~~~-pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~   77 (503)
T d3cw9a1           2 QTVNEMLRRAA--TRA-PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRL   77 (503)
T ss_dssp             CCHHHHHHHHH--HHS-TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH--HhC-CCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHH-cCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            48999999999  999 999999998778899999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEecCCCCCCHHHHHHHHhhcCCeEEEEcCccccc---cc-ccCcceEEeCCCCccccccccCCCCCCCCcccccccc
Q 045351          108 GVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK---IP-QLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRVSV  183 (349)
Q Consensus       108 G~~~v~i~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (349)
                      |++++|+++..+.++++++++++++++++++......   .. ....+++.++.     ...+...  ............
T Consensus        78 G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~--~~~~~~~~~~~~  150 (503)
T d3cw9a1          78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGD-----LVRDGEP--YSYGPPIEDPQR  150 (503)
T ss_dssp             TCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHH-----HEETTEE--CCCSCCCCCCCC
T ss_pred             CcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchh-----hhhhhcc--cccCCccccccc
Confidence            9999999999999999999999999999988653211   11 11233333321     1111000  001111222356


Q ss_pred             CCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc-CCCCCcEEEEecChhhHhhH-HHHHhhhhcCCEEEEcCC
Q 045351          184 SLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA-ARSRPAVVLCTVPYFHSYGF-TCCLRSLGMGESLVCMGK  261 (349)
Q Consensus       184 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~  261 (349)
                      .++++++++|||||||.||+|.++|+++...+......+. .....+++++.+|++|..+. ...+.+...++++++.+.
T Consensus       151 ~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (503)
T d3cw9a1         151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE  230 (503)
T ss_dssp             CTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSS
T ss_pred             hhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccc
Confidence            7789999999999999999999999999998887665543 13566899999999888877 566788888999999999


Q ss_pred             CCHHHHHHHHHhhcccEEEechHHHHHHHhcC-CCCCCCCCcchheehccCCCCCHHHHHHHHHHcCCcc--cccccccC
Q 045351          262 FDFGRMLKAVEEFRVSHVVLAPPVVLKMARDG-GTMDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN--RQLCLEFG  338 (349)
Q Consensus       262 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~-~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~--~~~~~~~G  338 (349)
                      +++..+...+.+++++++..+|..+..+.... .......+++||.+++||++++++....+.+.++...  .|+.+|.+
T Consensus       231 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~  310 (503)
T d3cw9a1         231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM  310 (503)
T ss_dssp             CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTE
T ss_pred             cChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999988776542 0344566789999999999999999999999986443  33445554


Q ss_pred             ce
Q 045351          339 AP  340 (349)
Q Consensus       339 ~~  340 (349)
                      ..
T Consensus       311 ~~  312 (503)
T d3cw9a1         311 NS  312 (503)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=86.90  E-value=0.71  Score=40.48  Aligned_cols=99  Identities=10%  Similarity=0.100  Sum_probs=73.6

Q ss_pred             cEEEEeccCCCCCCceeeechhhHHHHHhhhhccc---cCCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEcC-CCC
Q 045351          188 PAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVR---AARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCMG-KFD  263 (349)
Q Consensus       188 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~-~~~  263 (349)
                      ++.+.++.+.++    ..+|.+.+...+..+...+   + +.++|++...++-.-.+ +...++++..|+..+.+. .+.
T Consensus        34 P~~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~G-i~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~  107 (541)
T d1lcia_          34 PGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYG-LNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYN  107 (541)
T ss_dssp             TTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHT-CCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCC
T ss_pred             CCeEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcC-cCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCC
Confidence            334444555444    4689999988776654443   4 78999998888864322 457778999999988884 678


Q ss_pred             HHHHHHHHHhhcccEEEechHHHHHHHhc
Q 045351          264 FGRMLKAVEEFRVSHVVLAPPVVLKMARD  292 (349)
Q Consensus       264 ~~~~~~~i~~~~~t~l~~~P~~l~~l~~~  292 (349)
                      .+.+...++..+++.++.....+..+.+.
T Consensus       108 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  136 (541)
T d1lcia_         108 ERELLNSMNISQPTVVFVSKKGLQKILNV  136 (541)
T ss_dssp             HHHHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred             HHHHHHHHHhccceEEeeeccccccchhc
Confidence            89999999999999999999887776554

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=80.24  E-value=7.6  Score=33.46  Aligned_cols=104  Identities=8%  Similarity=-0.036  Sum_probs=78.3

Q ss_pred             ccCCCCcEEEEeccCCCCCCceeeechhhHHHHHhhhhcccc--CCCCCcEEEEecChhhHhhHHHHHhhhhcCCEEEEc
Q 045351          182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLVAAVAGGHAVRA--ARSRPAVVLCTVPYFHSYGFTCCLRSLGMGESLVCM  259 (349)
Q Consensus       182 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~  259 (349)
                      ...||.+|++...+|.     .-.+|...+...+..+...+.  ++.+++++...++....+ +...++++..|+..+..
T Consensus        22 ~~~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl   95 (534)
T d1v25a_          22 ALFGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTA   95 (534)
T ss_dssp             HHSTTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred             HHcCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEec
Confidence            4567888877666542     235899988887766544432  168899999998865443 46788999999999888


Q ss_pred             C-CCCHHHHHHHHHhhcccEEEechHHHHHHHh
Q 045351          260 G-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMAR  291 (349)
Q Consensus       260 ~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~  291 (349)
                      + .+..+.+...++..++..++........+..
T Consensus        96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~  128 (534)
T d1v25a_          96 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA  128 (534)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred             CCCCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence            5 5788999999999999999988877666543