Citrus Sinensis ID: 045361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
LPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF
Secondary Structure (PSIPRED)
ccccccccccccccHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHcccccccccccccccccccccccEEEEccccccccEEEEEHHHHHccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccEEEEEEEccccHHHHHHHHHHHHcccHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHccccEc
Coil and Loop (DISEMBL)
lptqtnrashlrplcaveaPEKIEKLATEISSLTLQEVCNLVDYLQDKlgvsaaafapaaavgvapgapgaeapasveeektEFDVvidevpsnARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF
Flexible Loop (DISEMBL)
lptqtnrashlrplcaveaPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIeglpkkfkegvskDDAEAAKKQLEEAGAKF
Low Complexity Region (SEG)
LPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLgvsaaafapaaavgvapgapgaeapasveeeKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF
Disordered region (IsUnstruct)
*************LCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVA*****************EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIE*****************************
Disordered Region (DISOPRED)
********************EKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVA************EEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGA**
Disordered Region (DISEMBL)
*********HLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVG********************FDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF
Disordered Region (DISPRO)
**TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
P36210	191	50S ribosomal protein L12	yes	no	0.959	0.743	0.717	3e-44
P36212	187	50S ribosomal protein L12	no	no	0.959	0.759	0.696	3e-42
P02398	189	50S ribosomal protein L12	N/A	no	0.945	0.740	0.706	3e-41
P36688	186	50S ribosomal protein L12	N/A	no	0.952	0.758	0.694	1e-40
P24929	186	50S ribosomal protein L12	N/A	no	0.952	0.758	0.694	6e-40
P36211	193	50S ribosomal protein L12	no	no	0.966	0.740	0.572	8e-36
O22386	185	50S ribosomal protein L12	yes	no	0.898	0.718	0.656	6e-32
Q06030	174	50S ribosomal protein L12	N/A	no	0.844	0.718	0.651	7e-29
Q06036	174	50S ribosomal protein L12	N/A	no	0.831	0.706	0.653	2e-28
Q1ACG9	135	50S ribosomal protein L12	N/A	no	0.817	0.896	0.488	3e-26

>sp|P36210|RK121_ARATH 50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=1

 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 120/145 (82%), Gaps = 3/145 (2%)

Query: 3   TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV 62
           T T+RA+HLRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK GVS  + APAAA 
Sbjct: 46  TLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAA 105

Query: 63  GVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
             AP   GA A     EE+TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLP
Sbjct: 106 VAAPADGGAAAVV---EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLP 162

Query: 123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
           KKFKEG++KD+AE AKK LEEAGAK
Sbjct: 163 KKFKEGITKDEAEEAKKTLEEAGAK 187

Arabidopsis thaliana (taxid: 3702)

>sp|P36212|RK123_ARATH 50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=2

 Score =  170 bits (431), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/145 (69%), Positives = 119/145 (82%), Gaps = 3/145 (2%)

Query: 3   TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV 62
           + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK GVS  + APAAA 
Sbjct: 42  SSSHRAINLRPISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAA 101

Query: 63  GVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
             AP   GA A     EE+TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLP
Sbjct: 102 VAAPADGGAAAVV---EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLP 158

Query: 123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
           KKFKEG++KD+AE AKK LEEAGAK
Sbjct: 159 KKFKEGITKDEAEEAKKTLEEAGAK 183

Arabidopsis thaliana (taxid: 3702)

>sp|P02398|RK12_SPIOL 50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/143 (70%), Positives = 114/143 (79%), Gaps = 3/143 (2%)

Query: 5   TNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGV 64
           + R + LRP+ AVEAPEKIE+L T++S LTL+E   LVD+LQDKLGVSAA+FAPAAAV  
Sbjct: 46  STRTTRLRPIAAVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAA 105

Query: 65  APGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 124
                 A       EEKTEFDV IDEVPSNARI+VIKAVR LT+L LKEAK+LIEGLPKK
Sbjct: 106 PGAPADAAPAV---EEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKK 162

Query: 125 FKEGVSKDDAEAAKKQLEEAGAK 147
            KEGVSKDDAE AKKQLE+AGAK
Sbjct: 163 LKEGVSKDDAEDAKKQLEDAGAK 185

This protein binds directly to 23S ribosomal RNA and is located at the base of L12-stalk in the factor binding center.

Spinacia oleracea (taxid: 3562)

>sp|P36688|RK12_NICSY 50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/144 (69%), Positives = 112/144 (77%), Gaps = 3/144 (2%)

Query: 4   QTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVG 63
           Q  RA+ LRPL AVEAPEK+ +L  EIS+LTL +   LV+YLQDKLGV+AA+    A   
Sbjct: 42  QNRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAAS---FAPAA 98

Query: 64  VAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPK 123
           V      A    +V EEKTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPK
Sbjct: 99  VVAAPGAAAEAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPK 158

Query: 124 KFKEGVSKDDAEAAKKQLEEAGAK 147
           KFKEGVSKD+AE AKKQLEEAGAK
Sbjct: 159 KFKEGVSKDEAEDAKKQLEEAGAK 182

Nicotiana sylvestris (taxid: 4096)

>sp|P24929|RK12_TOBAC 50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1

 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/144 (69%), Positives = 112/144 (77%), Gaps = 3/144 (2%)

Query: 4   QTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVG 63
              RA+ LRPL AVEAPEK+ +L  EIS+LTL +   LV+YLQDKLGV+AA+    A   
Sbjct: 42  HHRRATFLRPLAAVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAAS---FAPAA 98

Query: 64  VAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPK 123
           VA     A    +V EEKTEFDVVIDEVPSNARIA IKAVR LT+LALKEAK+LIEGLPK
Sbjct: 99  VAAAPGAAAEAPAVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPK 158

Query: 124 KFKEGVSKDDAEAAKKQLEEAGAK 147
           KFKEGVSKD+AE AKKQLEEAGAK
Sbjct: 159 KFKEGVSKDEAEDAKKQLEEAGAK 182

Nicotiana tabacum (taxid: 4097)

>sp|P36211|RK122_ARATH 50S ribosomal protein L12-2, chloroplastic OS=Arabidopsis thaliana GN=RPL12B PE=3 SV=2

 Score =  149 bits (375), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 83/145 (57%), Positives = 107/145 (73%), Gaps = 2/145 (1%)

Query: 3   TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV 62
           T ++RA +L P+ AV+ P+KI+K+ +EISSLTL+E   LVDY+QDK GVS   F+  AA 
Sbjct: 47  TLSHRAIYLHPISAVKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSIL-FSAPAAA 105

Query: 63  GVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
            + P      A ASVE + T FDVVI++VP   RIAVI A+R +T+L+L E+K+LIEG P
Sbjct: 106 ALPPPLDNGGATASVERQTT-FDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFP 164

Query: 123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
           KKFKEGV+KD+AE  K QLEEAGAK
Sbjct: 165 KKFKEGVTKDEAEEDKTQLEEAGAK 189

Arabidopsis thaliana (taxid: 3702)

>sp|O22386|RK12_ORYSJ 50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL12-2 PE=2 SV=2

 Score =  136 bits (342), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 99/134 (73%), Gaps = 1/134 (0%)

Query: 15  CAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAP 74
            A E+P K+ +L   I+ LTL+E   LVD+LQ++LGVSAAAFAPAA V          A 
Sbjct: 50  TATESP-KVLELGDAIAGLTLEEARGLVDHLQERLGVSAAAFAPAAVVAAPGAGGAGAAA 108

Query: 75  ASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDA 134
                EKTEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK KEGVSKD+A
Sbjct: 109 DEAPAEKTEFDVVIEEVPSSARIASIKVVRALTNLALKEAKDLIEGLPKKVKEGVSKDEA 168

Query: 135 EAAKKQLEEAGAKF 148
           E AKKQLEE GAK 
Sbjct: 169 EDAKKQLEEVGAKV 182

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q06030|RK121_SECCE 50S ribosomal protein L12-1, chloroplastic OS=Secale cereale GN=RPL12-1 PE=2 SV=1

 Score =  125 bits (315), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 99/132 (75%), Gaps = 7/132 (5%)

Query: 16  AVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPA 75
           A E+P K+ +L   I+ LTL+E  NLVD+LQ++L VSAA+F PAAA   A      EAP 
Sbjct: 46  ATESP-KVLELGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVE--EAPV 102

Query: 76  SVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAE 135
               E+TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK KE VSKD+AE
Sbjct: 103 ----EQTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAE 158

Query: 136 AAKKQLEEAGAK 147
            AKKQLE  GAK
Sbjct: 159 EAKKQLEGVGAK 170

Secale cereale (taxid: 4550)

>sp|Q06036|RK122_SECCE 50S ribosomal protein L12-2, chloroplastic OS=Secale cereale GN=RPL12-2 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 98/130 (75%), Gaps = 7/130 (5%)

Query: 18  EAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASV 77
           E+P K+ +L   I+ LTL+E  NLVD+LQ++L VSAA+F PAAA   A      EAP   
Sbjct: 48  ESP-KVLELGDAIAGLTLEEARNLVDHLQERLCVSAASFPPAAAGLRAAAVE--EAPV-- 102

Query: 78  EEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAA 137
             E+TEFDVVI+EVPS+ARIA IK VR LTNLALKEAKDLIEGLPKK KE VSKD+AE A
Sbjct: 103 --EQTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAEEA 160

Query: 138 KKQLEEAGAK 147
           KKQLE  GAK
Sbjct: 161 KKQLEGVGAK 170

Secale cereale (taxid: 4550)

>sp|Q1ACG9|RK12_CHAVU 50S ribosomal protein L12, chloroplastic OS=Chara vulgaris GN=rpl12 PE=3 SV=2

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 86/127 (67%), Gaps = 6/127 (4%)

Query: 23  IEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEE--E 80
           + +L   I SLTLQE+    D LQD+LG+S+     +  +     +   E    VEE  E
Sbjct: 9   LNQLLNAIKSLTLQEIKIFTDKLQDELGISSDNLYSSRGILTESTSHNKE----VEEIDE 64

Query: 81  KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
           KTEFD++++EVPS++RI VIK +R++TN  LKEAK+ IE LPK  KEG+SK++AE+ K Q
Sbjct: 65  KTEFDIILEEVPSSSRITVIKVIRSITNSGLKEAKEFIEALPKTVKEGISKEEAESVKAQ 124

Query: 141 LEEAGAK 147
           LEE+GAK
Sbjct: 125 LEESGAK 131

Chara vulgaris (taxid: 55564)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
15232274	191	50S ribosomal protein L12-1 [Arabidopsis	0.959	0.743	0.717	2e-42
297815046	186	ribosomal protein L12-C [Arabidopsis lyr	0.972	0.774	0.707	4e-42
224055553	187	predicted protein [Populus trichocarpa]	0.945	0.748	0.737	6e-41
297815042	184	ribosomal protein L12-A [Arabidopsis lyr	0.939	0.755	0.718	8e-41
15232276	187	50S ribosomal protein L12-3 [Arabidopsis	0.959	0.759	0.696	2e-40
468773	187	ribosomal protein L12 [Arabidopsis thali	0.959	0.759	0.696	3e-40
21592776	187	50S ribosomal protein L12-C [Arabidopsis	0.959	0.759	0.689	6e-40
449450097	183	PREDICTED: 50S ribosomal protein L12, ch	0.966	0.781	0.741	1e-39
133085	189	RecName: Full=50S ribosomal protein L12,	0.945	0.740	0.706	2e-39
356538549	188	PREDICTED: 50S ribosomal protein L12, ch	0.979	0.771	0.701	3e-39

>gi|15232274|ref|NP_189421.1| 50S ribosomal protein L12-1 [Arabidopsis thaliana] gi|548653|sp|P36210.1|RK121_ARATH RecName: Full=50S ribosomal protein L12-1, chloroplastic; AltName: Full=CL12-A; Flags: Precursor gi|468771|emb|CAA48181.1| ribosomal protein L12 [Arabidopsis thaliana] gi|11994488|dbj|BAB02529.1| 50S ribosomal protein L12-like [Arabidopsis thaliana] gi|15450974|gb|AAK96758.1| 50s ribosomal protein L12-like [Arabidopsis thaliana] gi|15810119|gb|AAL07203.1| putative 50S ribosomal protein L12-A [Arabidopsis thaliana] gi|22530940|gb|AAM96974.1| 50S ribosomal protein L12-A [Arabidopsis thaliana] gi|23198422|gb|AAN15738.1| 50S ribosomal protein L12-A [Arabidopsis thaliana] gi|29824165|gb|AAP04043.1| putative 50S ribosomal protein L12-A [Arabidopsis thaliana] gi|30102916|gb|AAP21376.1| At3g27830 [Arabidopsis thaliana] gi|332643847|gb|AEE77368.1| 50S ribosomal protein L12-1 [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 120/145 (82%), Gaps = 3/145 (2%)

Query: 3   TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV 62
           T T+RA+HLRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK GVS  + APAAA 
Sbjct: 46  TLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAA 105

Query: 63  GVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
             AP   GA A     EE+TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLP
Sbjct: 106 VAAPADGGAAAVV---EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLP 162

Query: 123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
           KKFKEG++KD+AE AKK LEEAGAK
Sbjct: 163 KKFKEGITKDEAEEAKKTLEEAGAK 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815046|ref|XP_002875406.1| ribosomal protein L12-C [Arabidopsis lyrata subsp. lyrata] gi|297321244|gb|EFH51665.1| ribosomal protein L12-C [Arabidopsis lyrata subsp. lyrata]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 122/147 (82%), Gaps = 3/147 (2%)

Query: 1   LPTQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAA 60
           L + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK GVS  + APAA
Sbjct: 39  LSSSSHRAINLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAA 98

Query: 61  AVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEG 120
           A   AP   GA   A+V EE+TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEG
Sbjct: 99  AAVAAPSDGGA---AAVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEG 155

Query: 121 LPKKFKEGVSKDDAEAAKKQLEEAGAK 147
           LPKKFKEGV+KD+AE AKK LEEAGAK
Sbjct: 156 LPKKFKEGVTKDEAEEAKKTLEEAGAK 182

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055553|ref|XP_002298536.1| predicted protein [Populus trichocarpa] gi|118483906|gb|ABK93843.1| unknown [Populus trichocarpa] gi|222845794|gb|EEE83341.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 115/141 (81%), Gaps = 1/141 (0%)

Query: 7   RASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAP 66
           R+SH+RP+ AV APEKIEKL  EISSLTL+E   LVDYLQDKLGVSAAA    AA     
Sbjct: 44  RSSHVRPVAAVAAPEKIEKLGAEISSLTLEEARTLVDYLQDKLGVSAAA-FAPAAAVGVA 102

Query: 67  GAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFK 126
               A+A A+V EEKTEFDVVI+EVPSN RIAVIK+VR LT+LALKEAK+LIEGLPKKFK
Sbjct: 103 PGAAADAGAAVVEEKTEFDVVIEEVPSNVRIAVIKSVRALTSLALKEAKELIEGLPKKFK 162

Query: 127 EGVSKDDAEAAKKQLEEAGAK 147
           EGVSKD+AE AKKQLE AGAK
Sbjct: 163 EGVSKDEAEEAKKQLEAAGAK 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815042|ref|XP_002875404.1| ribosomal protein L12-A [Arabidopsis lyrata subsp. lyrata] gi|297321242|gb|EFH51663.1| ribosomal protein L12-A [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/142 (71%), Positives = 117/142 (82%), Gaps = 3/142 (2%)

Query: 3   TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV 62
           T T+RA+HLRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK GVS  + APAAA 
Sbjct: 46  TLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAA 105

Query: 63  GVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
             AP   GA A     EE+TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLP
Sbjct: 106 VAAPADGGAAAVV---EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLP 162

Query: 123 KKFKEGVSKDDAEAAKKQLEEA 144
           KKFKEGV+KD+AE AKK LEEA
Sbjct: 163 KKFKEGVTKDEAEEAKKTLEEA 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232276|ref|NP_189423.1| 50S ribosomal protein L12-3 [Arabidopsis thaliana] gi|21431811|sp|P36212.2|RK123_ARATH RecName: Full=50S ribosomal protein L12-3, chloroplastic; AltName: Full=CL12-C; Flags: Precursor gi|11994490|dbj|BAB02531.1| 50S ribosomal protein L12-like [Arabidopsis thaliana] gi|14335124|gb|AAK59841.1| AT3g27850/K16N12_7 [Arabidopsis thaliana] gi|22530924|gb|AAM96966.1| 50S ribosomal protein L12-C [Arabidopsis thaliana] gi|23506071|gb|AAN28895.1| At3g27850/K16N12_7 [Arabidopsis thaliana] gi|332643851|gb|AEE77372.1| 50S ribosomal protein L12-3 [Arabidopsis thaliana]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/145 (69%), Positives = 119/145 (82%), Gaps = 3/145 (2%)

Query: 3   TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV 62
           + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK GVS  + APAAA 
Sbjct: 42  SSSHRAINLRPISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAA 101

Query: 63  GVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
             AP   GA A     EE+TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLP
Sbjct: 102 VAAPADGGAAAVV---EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLP 158

Query: 123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
           KKFKEG++KD+AE AKK LEEAGAK
Sbjct: 159 KKFKEGITKDEAEEAKKTLEEAGAK 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|468773|emb|CAA48183.1| ribosomal protein L12 [Arabidopsis thaliana]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/145 (69%), Positives = 119/145 (82%), Gaps = 3/145 (2%)

Query: 3   TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV 62
           + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK GVS  + APAAA 
Sbjct: 42  SSSHRAINLRPISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAA 101

Query: 63  GVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
             AP   GA A     EE+TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLP
Sbjct: 102 VAAPADGGAAAVV---EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLP 158

Query: 123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
           KKFKEG++KD+AE AKK LEEAGAK
Sbjct: 159 KKFKEGITKDEAEEAKKTLEEAGAK 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592776|gb|AAM64725.1| 50S ribosomal protein L12-C [Arabidopsis thaliana]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 119/145 (82%), Gaps = 3/145 (2%)

Query: 3   TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV 62
           + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK GVS  + APAAA 
Sbjct: 42  SSSHRAINLRPISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAA 101

Query: 63  GVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
             AP   GA A     EE+T+FDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLP
Sbjct: 102 VAAPADGGAAAVV---EEQTKFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLP 158

Query: 123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
           KKFKEG++KD+AE AKK LEEAGAK
Sbjct: 159 KKFKEGITKDEAEEAKKTLEEAGAK 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450097|ref|XP_004142800.1| PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis sativus]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 121/143 (84%)

Query: 6   NRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVA 65
            R +HLRP+ AV APEKIEKL ++ISSLTL+E   LVD+LQDKLGVSAAAFAPAA V   
Sbjct: 38  RRPTHLRPIAAVSAPEKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAP 97

Query: 66  PGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKF 125
            GA G EA A   EEKTEFDVVI++VPSNARIAVIK+VR +T+LALKEAK+LIEGLPKKF
Sbjct: 98  GGAVGGEAAAEAVEEKTEFDVVIEDVPSNARIAVIKSVRAMTSLALKEAKELIEGLPKKF 157

Query: 126 KEGVSKDDAEAAKKQLEEAGAKF 148
           KEGVSK++A+ AKKQLEEAGAK 
Sbjct: 158 KEGVSKEEADDAKKQLEEAGAKI 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133085|sp|P02398.2|RK12_SPIOL RecName: Full=50S ribosomal protein L12, chloroplastic; AltName: Full=CL12; Flags: Precursor gi|170115|gb|AAA34031.1| ribosomal L12 precursor [Spinacia oleracea] gi|47154904|emb|CAA31551.1| SocL12 [Spinacia oleracea]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/143 (70%), Positives = 114/143 (79%), Gaps = 3/143 (2%)

Query: 5   TNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGV 64
           + R + LRP+ AVEAPEKIE+L T++S LTL+E   LVD+LQDKLGVSAA+FAPAAAV  
Sbjct: 46  STRTTRLRPIAAVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAA 105

Query: 65  APGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKK 124
                 A       EEKTEFDV IDEVPSNARI+VIKAVR LT+L LKEAK+LIEGLPKK
Sbjct: 106 PGAPADAAPAV---EEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKK 162

Query: 125 FKEGVSKDDAEAAKKQLEEAGAK 147
            KEGVSKDDAE AKKQLE+AGAK
Sbjct: 163 LKEGVSKDDAEDAKKQLEDAGAK 185

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538549|ref|XP_003537765.1| PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Glycine max]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 118/151 (78%), Gaps = 6/151 (3%)

Query: 1   LPTQTNRASHLRP----LCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAF 56
            P  ++RA+  R     + AVEAPEKI KL  EI+ LTL+E  NLVD+LQDKLGVSAAAF
Sbjct: 36  FPNLSHRAATTRRPRVVVSAVEAPEKITKLGDEIAGLTLEEAKNLVDFLQDKLGVSAAAF 95

Query: 57  APAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKD 116
           AP A    A GA       +V EEKTEFDVVI+EVPSNARIAVIKAVR LTNLALKEAK+
Sbjct: 96  APVAVAAGAGGA--VADAPAVVEEKTEFDVVIEEVPSNARIAVIKAVRALTNLALKEAKE 153

Query: 117 LIEGLPKKFKEGVSKDDAEAAKKQLEEAGAK 147
           LIEGLPKKFKEG+SKD+AE AKKQLEEAGAK
Sbjct: 154 LIEGLPKKFKEGISKDEAEDAKKQLEEAGAK 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2086435	191	RPL12-A "ribosomal protein L12	0.959	0.743	0.613	2.6e-38
TAIR|locus:2086450	187	RPL12-C "ribosomal protein L12	0.959	0.759	0.593	1.7e-36
TAIR|locus:2086440	193	RPL12-B "ribosomal protein L12	0.966	0.740	0.489	7.1e-29
TIGR_CMR|GSU_2864	127	GSU_2864 "ribosomal protein L7	0.75	0.874	0.415	6.7e-17
UNIPROTKB|P0A7K2	121	rplL [Escherichia coli K-12 (t	0.445	0.545	0.656	8.6e-17
TIGR_CMR|DET_0990	124	DET_0990 "ribosomal protein L7	0.790	0.943	0.387	9.8e-16
TIGR_CMR|CHY_2320	127	CHY_2320 "ribosomal protein L7	0.810	0.944	0.36	4.2e-15
TIGR_CMR|CBU_0229	126	CBU_0229 "ribosomal protein L7	0.445	0.523	0.597	8.8e-15
TIGR_CMR|CJE_0527	125	CJE_0527 "ribosomal protein L7	0.445	0.528	0.611	8.8e-15
UNIPROTKB|Q9KV31	121	rplL "50S ribosomal protein L7	0.439	0.537	0.575	6.2e-14

TAIR|locus:2086435 RPL12-A "ribosomal protein L12-A" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 89/145 (61%), Positives = 104/145 (71%)

Query:     3 TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXX 62
             T T+RA+HLRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK              
Sbjct:    46 TLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAA 105

Query:    63 XXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
                               +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLP
Sbjct:   106 VAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLP 162

Query:   123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
             KKFKEG++KD+AE AKK LEEAGAK
Sbjct:   163 KKFKEGITKDEAEEAKKTLEEAGAK 187

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000311 "plastid large ribosomal subunit" evidence=ISS

TAIR|locus:2086450 RPL12-C "ribosomal protein L12-C" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 86/145 (59%), Positives = 103/145 (71%)

Query:     3 TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXX 62
             + ++RA +LRP+ AVEAPEKIEK+ +EISSLTL+E   LVDYLQDK              
Sbjct:    42 SSSHRAINLRPISAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAA 101

Query:    63 XXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
                               +TEFDVVI+EVPS++RIAVIKAVR LT+LALKEAK+LIEGLP
Sbjct:   102 VAAPADGGAAAVVEE---QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLP 158

Query:   123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
             KKFKEG++KD+AE AKK LEEAGAK
Sbjct:   159 KKFKEGITKDEAEEAKKTLEEAGAK 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000311 "plastid large ribosomal subunit" evidence=ISS

TAIR|locus:2086440 RPL12-B "ribosomal protein L12-B" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 71/145 (48%), Positives = 93/145 (64%)

Query:     3 TQTNRASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXX 62
             T ++RA +L P+ AV+ P+KI+K+ +EISSLTL+E   LVDY+QDK              
Sbjct:    47 TLSHRAIYLHPISAVKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAA 106

Query:    63 XXXXXXXXXXXXXXXXXXKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLP 122
                               +T FDVVI++VP   RIAVI A+R +T+L+L E+K+LIEG P
Sbjct:   107 LPPPLDNGGATASVER--QTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFP 164

Query:   123 KKFKEGVSKDDAEAAKKQLEEAGAK 147
             KKFKEGV+KD+AE  K QLEEAGAK
Sbjct:   165 KKFKEGVTKDEAEEDKTQLEEAGAK 189

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0000311 "plastid large ribosomal subunit" evidence=ISS

TIGR_CMR|GSU_2864 GSU_2864 "ribosomal protein L7/L12" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 49/118 (41%), Positives = 64/118 (54%)

Query:    30 ISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEFDVVID 89
             I ++T+ E+  LV  L+DK                                KTEFDV++ 
Sbjct:    13 IENMTVLELAELVKELEDKFGVSAAAPVAVAAAAAPAAAAEAAEE------KTEFDVILK 66

Query:    90 EVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAK 147
                +N +I VIK VR LT L LKEAKDL++G PK  K GVSK++AE AKKQL E+GA+
Sbjct:    67 SAGAN-KIGVIKVVRALTGLGLKEAKDLVDGAPKPVKNGVSKEEAEEAKKQLVESGAE 123

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|P0A7K2 rplL [Escherichia coli K-12 (taxid:83333)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 44/67 (65%), Positives = 51/67 (76%)

Query:    81 KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
             KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAEA KK 
Sbjct:    52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKA 110

Query:   141 LEEAGAK 147
             LEEAGA+
Sbjct:   111 LEEAGAE 117

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

TIGR_CMR|DET_0990 DET_0990 "ribosomal protein L7/L12" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 48/124 (38%), Positives = 69/124 (55%)

Query:    23 IEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKT 82
             I+++ + I  +T+ E+  LV  L+ +                                KT
Sbjct:     3 IDEMMSAIKGMTVIELSELVKALEKEFGVSAAVAVAAPAAGGAAVAAAAEEE------KT 56

Query:    83 EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLE 142
             EF+V++ +V +N +I VIKAVR LT+L LKEAKD++E  PK  KE VSK++A+AAKK LE
Sbjct:    57 EFNVILKDVGAN-KINVIKAVRELTSLGLKEAKDMVEAAPKAVKENVSKEEADAAKKALE 115

Query:   143 EAGA 146
              AGA
Sbjct:   116 AAGA 119

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CHY_2320 CHY_2320 "ribosomal protein L7/L12" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 45/125 (36%), Positives = 64/125 (51%)

Query:    22 KIEKLATEISSLTLQEVCNLVDYLQDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 81
             K++++   + SLT+ E+  LV   +++                                K
Sbjct:     3 KVQEILEAVKSLTVLELAELVKAFEEEFGVSAAAPVAVAAAPAAGAAAAAPAQEE----K 58

Query:    82 TEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQL 141
             TEFDV++   P   ++ VIK VR +T L LKE+KDL++G PK  KE VSK DAEA K +L
Sbjct:    59 TEFDVILVS-PGAQKVNVIKVVREITGLGLKESKDLVDGAPKPVKEKVSKADAEAIKAKL 117

Query:   142 EEAGA 146
             EE GA
Sbjct:   118 EEVGA 122

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0229 CBU_0229 "ribosomal protein L7/L12" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 40/67 (59%), Positives = 50/67 (74%)

Query:    81 KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
             KTEF+V +     N +I VIKA+RT+T L LKEAKDL+E +P   KE VSK++AE  KK+
Sbjct:    57 KTEFNVKMVSFGDN-KIGVIKAIRTITGLGLKEAKDLVESVPSVVKESVSKEEAEKIKKE 115

Query:   141 LEEAGAK 147
             LEEAGAK
Sbjct:   116 LEEAGAK 122

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|CJE_0527 CJE_0527 "ribosomal protein L7/L12" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 41/67 (61%), Positives = 49/67 (73%)

Query:    81 KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
             KTEFD+V+ +  +  +I VIK VR LT L LKEAKD +E  P   KEGV+K +AE AKKQ
Sbjct:    56 KTEFDIVLTDGGAK-KIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEGVAKAEAEEAKKQ 114

Query:   141 LEEAGAK 147
             LEEAGAK
Sbjct:   115 LEEAGAK 121

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|Q9KV31 rplL "50S ribosomal protein L7/L12" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/66 (57%), Positives = 50/66 (75%)

Query:    81 KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
             +TEF+V++    +N ++AVIKAVR  T L LKEAK L++G P   KE VSK++AEA KK+
Sbjct:    52 QTEFNVILAAAGAN-KVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKEEAEALKKE 110

Query:   141 LEEAGA 146
             LEEAGA
Sbjct:   111 LEEAGA 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7KIR5	RL7_CYAP7	No assigned EC number	0.5412	0.7229	0.8167	yes	no
Q5N3N6	RL7_SYNP6	No assigned EC number	0.5476	0.8175	0.9453	yes	no
P51339	RK12_PORPU	No assigned EC number	0.544	0.8175	0.9379	N/A	no
Q8DM25	RL7_THEEB	No assigned EC number	0.5593	0.7905	0.8863	yes	no
B8HVL2	RL7_CYAP4	No assigned EC number	0.5596	0.7229	0.8167	yes	no
B0CAD2	RL7_ACAM1	No assigned EC number	0.5483	0.8175	0.9379	yes	no
B1X073	RL7_CYAA5	No assigned EC number	0.5084	0.7972	0.8872	yes	no
Q31QK6	RL7_SYNE7	No assigned EC number	0.5476	0.8175	0.9453	yes	no
A1TVT1	RL7_ACIAC	No assigned EC number	0.5333	0.7635	0.8968	yes	no
A1WCN0	RL7_ACISJ	No assigned EC number	0.5166	0.7635	0.8968	yes	no
A5VR16	RL7_BRUO2	No assigned EC number	0.5447	0.7770	0.9274	yes	no
B6IRP5	RL7_RHOCS	No assigned EC number	0.5079	0.8108	0.9523	yes	no
A0T0C0	RK12_PHATC	No assigned EC number	0.4609	0.8310	0.9609	yes	no
Q119S9	RL7_TRIEI	No assigned EC number	0.4761	0.8513	0.9473	yes	no
B3EER1	RL7_CHLL2	No assigned EC number	0.5403	0.7972	0.944	yes	no
P23349	RL7_SYNY3	No assigned EC number	0.5161	0.8040	0.9296	N/A	no
B7JWT5	RL7_CYAP8	No assigned EC number	0.5	0.8310	0.9318	yes	no
A5UE95	RL7_HAEIE	No assigned EC number	0.5040	0.7635	0.9186	yes	no
P02398	RK12_SPIOL	No assigned EC number	0.7062	0.9459	0.7407	N/A	no
A5UHD2	RL7_HAEIG	No assigned EC number	0.5040	0.7635	0.9186	yes	no
Q7NK76	RL7_GLOVI	No assigned EC number	0.5	0.8716	0.9416	yes	no
Q5WZM0	RL7_LEGPL	No assigned EC number	0.5299	0.7432	0.8730	yes	no
Q5NID3	RL7_FRATT	No assigned EC number	0.5161	0.7837	0.928	yes	no
B2JA77	RL7_NOSP7	No assigned EC number	0.4596	0.8175	0.9307	yes	no
P44348	RL7_HAEIN	No assigned EC number	0.5040	0.7635	0.9186	yes	no
Q1XDE8	RK12_PORYE	No assigned EC number	0.5317	0.8108	0.9302	N/A	no
Q8YLJ5	RL7_NOSS1	No assigned EC number	0.4919	0.8175	0.9307	yes	no
P36210	RK121_ARATH	No assigned EC number	0.7172	0.9594	0.7434	yes	no
Q1MPU3	RL7_LAWIP	No assigned EC number	0.5470	0.7567	0.875	yes	no
O78414	RK12_GUITH	No assigned EC number	0.5275	0.8243	0.9457	yes	no
Q4QMS6	RL7_HAEI8	No assigned EC number	0.5040	0.7635	0.9186	yes	no
B1XJG9	RL7_SYNP2	No assigned EC number	0.5254	0.7635	0.8828	yes	no
Q14JT6	RL7_FRAT1	No assigned EC number	0.5161	0.7837	0.928	yes	no
O22386	RK12_ORYSJ	No assigned EC number	0.6567	0.8986	0.7189	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
CHL00083	131	CHL00083, rpl12, ribosomal protein L12	8e-44
cd00387	127	cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L1	2e-42
PRK00157	123	PRK00157, rplL, 50S ribosomal protein L7/L12; Revi	1e-35
COG0222	124	COG0222, RplL, Ribosomal protein L7/L12 [Translati	3e-28
TIGR00855	123	TIGR00855, L12, ribosomal protein L7/L12	8e-26
pfam00542	68	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12	3e-25

>gnl|CDD|214358 CHL00083, rpl12, ribosomal protein L12

 Score =  140 bits (354), Expect = 8e-44
 Identities = 67/127 (52%), Positives = 88/127 (69%), Gaps = 2/127 (1%)

Query: 21  EKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEE 80
            KI ++  E+ SLTL E   LV  +++  GV A+A  P     ++  A  A   A   EE
Sbjct: 3   TKINEIIEELKSLTLLEAAELVKQIEETFGVDASA--PVGGGMMSAPAAAAAQAAEEVEE 60

Query: 81  KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
           KTEFDV+++EVP++ RIAV+K VR+LT L LKEAK+L+E LPK  KEG+SK++AE AKKQ
Sbjct: 61  KTEFDVILEEVPADKRIAVLKVVRSLTGLGLKEAKELVESLPKTIKEGISKEEAEEAKKQ 120

Query: 141 LEEAGAK 147
           LEEAGAK
Sbjct: 121 LEEAGAK 127

Length = 131

>gnl|CDD|100102 cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L12

 Score =  136 bits (345), Expect = 2e-42
 Identities = 69/127 (54%), Positives = 85/127 (66%), Gaps = 3/127 (2%)

Query: 21  EKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEE 80
            K+E++   +  LTL E   LV  L++K GVSA+A A AAA   AP A  A A     EE
Sbjct: 1   LKVEEIVEALKELTLLEAAELVKALEEKFGVSASA-AAAAAAAAAPAAAAAAAAE--AEE 57

Query: 81  KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
           KTEFDVV++   +  +IAVIK VR +T L LKEAKDL+E  PK  KEGVSK++AE  KK+
Sbjct: 58  KTEFDVVLESFGAAKKIAVIKEVREITGLGLKEAKDLVESAPKVLKEGVSKEEAEEIKKK 117

Query: 141 LEEAGAK 147
           LEEAGAK
Sbjct: 118 LEEAGAK 124

Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and contain binding sites for other molecules. Initiation factors, elongation factors, and release factors are known to interact with the L7/L12 stalk during their GTP-dependent cycles. The binding site for the factors EF-Tu and EF-G comprises L7/L12, L10, L11, the L11-binding region of 23S rRNA, and the sarcin-ricin loop of 23S rRNA. Removal of L7/L12 has minimal effect on factor binding and it has been proposed that L7/L12 induces the catalytically active conformation of EF-Tu and EF-G, thereby stimulating the GTPase activity of both factors. In eukaryotes, the proteins that perform the equivalent function to L7/L12 are called P1 and P2, which do not share sequence similarity with L7/L12. However, a bacterial L7/L12 homolog is found in some eukaryotes, in mitochondria and chloroplasts. In archaea, the protein equivalent to L7/L12 is called aL12 or L12p, but it is closer in sequence to P1 and P2 than to L7/L12. Length = 127

>gnl|CDD|234671 PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed

 Score =  119 bits (300), Expect = 1e-35
 Identities = 65/125 (52%), Positives = 80/125 (64%), Gaps = 10/125 (8%)

Query: 23  IEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKT 82
            E++   +  +T+ E+  LV  L++K GVSAAA      V  A  A  A A     EEKT
Sbjct: 5   KEQIIEALKEMTVLELSELVKALEEKFGVSAAA-----PVAAAAAAAAAAA----AEEKT 55

Query: 83  EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLE 142
           EFDVV+       +IAVIKAVR +T L LKEAKDL+EG PK  KEGVSK++AE  KK+LE
Sbjct: 56  EFDVVLKSAGDK-KIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLE 114

Query: 143 EAGAK 147
           EAGAK
Sbjct: 115 EAGAK 119

Length = 123

>gnl|CDD|223300 COG0222, RplL, Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]

 Score =  100 bits (251), Expect = 3e-28
 Identities = 66/126 (52%), Positives = 80/126 (63%), Gaps = 9/126 (7%)

Query: 22  KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEK 81
             E++   +  LT+ E+  LV  L++K GV+AAA         A GA  AEA     EEK
Sbjct: 4   TKEQIIEALKELTVLELSELVKALEEKFGVTAAA----PVAAAAAGAAAAEAA----EEK 55

Query: 82  TEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQL 141
           TEFDVV+       +IAVIK VR LT L LKEAKDL+EG PK  KEGVSK++AE  KK+L
Sbjct: 56  TEFDVVLKSAGGK-KIAVIKVVRELTGLGLKEAKDLVEGAPKVLKEGVSKEEAEEIKKKL 114

Query: 142 EEAGAK 147
           EEAGAK
Sbjct: 115 EEAGAK 120

Length = 124

>gnl|CDD|233152 TIGR00855, L12, ribosomal protein L7/L12

 Score = 94.0 bits (234), Expect = 8e-26
 Identities = 64/125 (51%), Positives = 83/125 (66%), Gaps = 8/125 (6%)

Query: 23  IEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKT 82
            E++   +  +T+ E+  LV  L++K GVSAAA   A A G A       A A+  EEKT
Sbjct: 3   KEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVAAGAAGAA-------AAAAAAEEKT 55

Query: 83  EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLE 142
           EFDV++ +   + +IAVIK VR +T L LKEAKDL+EG PK  KEGVSK++AE  KK+LE
Sbjct: 56  EFDVIL-KGAGDNKIAVIKVVREITGLGLKEAKDLVEGAPKVLKEGVSKEEAEELKKKLE 114

Query: 143 EAGAK 147
           EAGAK
Sbjct: 115 EAGAK 119

Ribosomal proteins L7 and L12 are synonymous except for post-translational modification of the N-terminal amino acid. THis model resembles pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 123

>gnl|CDD|201294 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain

 Score = 91.0 bits (227), Expect = 3e-25
 Identities = 42/65 (64%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 83  EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLE 142
           EFDVV+       +IAVIK VR +T L LKEAKDL+EG PK  KEGVSK++AE  KK+LE
Sbjct: 1   EFDVVLTSAGDK-KIAVIKVVREITGLGLKEAKDLVEGAPKTIKEGVSKEEAEEIKKKLE 59

Query: 143 EAGAK 147
           EAGAK
Sbjct: 60  EAGAK 64

Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
CHL00083	131	rpl12 ribosomal protein L12	100.0
KOG1715	187	consensus Mitochondrial/chloroplast ribosomal prot	100.0
cd00387	127	Ribosomal_L7_L12 Ribosomal protein L7/L12. Ribosom	100.0
TIGR00855	126	L12 ribosomal protein L7/L12. THis model resembles	100.0
COG0222	124	RplL Ribosomal protein L7/L12 [Translation, riboso	100.0
PRK00157	123	rplL 50S ribosomal protein L7/L12; Reviewed	100.0
PF00542	68	Ribosomal_L12: Ribosomal protein L7/L12 C-terminal	99.9
PRK06771	93	hypothetical protein; Provisional	97.85

>CHL00083 rpl12 ribosomal protein L12

Probab=100.00  E-value=2.9e-42  Score=264.49  Aligned_cols=126  Identities=54%  Similarity=0.782  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHH
Q 045361           21 EKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVI  100 (148)
Q Consensus        21 ~kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vI  100 (148)
                      +++++|+|+|++|||+|++||++.|+++|||++++.+++++++ +++++++. +++..+|||+|||+|++|++++||+||
T Consensus         3 ~k~~~ivd~i~~LTllE~~eLv~~le~~fgv~~~~~~a~~~~~-~~a~~~~~-~~~~~~EKT~F~V~L~~~~~~~Ki~vI   80 (131)
T CHL00083          3 TKINEIIEELKSLTLLEAAELVKQIEETFGVDASAPVGGGMMS-APAAAAAQ-AAEEVEEKTEFDVILEEVPADKRIAVL   80 (131)
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccchhhhhhcc-ccCccccc-ccchhhhcceeeEEEeecCCcchHHHH
Confidence            4899999999999999999999999999999987533322121 11111111 122335999999999999888999999


Q ss_pred             HHHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361          101 KAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus       101 K~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      |+||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|
T Consensus        81 K~vr~it~lgLkeaK~lVe~~P~~ike~v~KeeAe~ik~~le~~Ga~v  128 (131)
T CHL00083         81 KVVRSLTGLGLKEAKELVESLPKTIKEGISKEEAEEAKKQLEEAGAKV  128 (131)
T ss_pred             HHHHHHcCCCHHHHHHHHHhCCHHHHhCCCHHHHHHHHHHHHHcCCEE
Confidence            999999999999999999999999999999999999999999999986

>KOG1715 consensus Mitochondrial/chloroplast ribosomal protein L12 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.2e-42  Score=275.89  Aligned_cols=141  Identities=50%  Similarity=0.708  Sum_probs=120.4

Q ss_pred             cccccCCCCcCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeE
Q 045361            7 RASHLRPLCAVEAPEKIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDV   86 (148)
Q Consensus         7 ~~~~~~~~~~~~~~~kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV   86 (148)
                      +..|..+.+....++||.+|+|+|++|||+|++||+++|+++|||+..+++|++++|+++..+ +++.+.++.|+|.|||
T Consensus        44 ~~~~~~~~~~~~~~~KI~~iv~eIssLtLlE~s~L~~~Lk~kl~i~e~~~~~a~~~g~~~~~~-~~a~ee~k~ekt~FdV  122 (187)
T KOG1715|consen   44 RATPLPPIAAVPPPPKISKIVDEISSLTLLETSDLVDLLKKKLNIPELPLAPAAAAGAAAPDA-GGAEEEAKKEKTTFDV  122 (187)
T ss_pred             ccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCcccchhhccccCCCCCc-ccccccchhhcceEEE
Confidence            334555555677788999999999999999999999999999999999887765554333221 2233334457788999


Q ss_pred             EEecCCCchhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361           87 VIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus        87 ~L~~~~~~kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +|++|++..||+|||+||.+|||||+|||+|||++|+.+|+||+|||||+||++|+++||+|
T Consensus       123 kL~~fda~~KIkVIKEVR~~tgL~LkeAKklVE~aP~ilKegvtKeEAEkik~kLea~GakV  184 (187)
T KOG1715|consen  123 KLEKFDASSKIKVIKEVRALTGLGLKEAKKLVEKAPKILKEGVTKEEAEEIKEKLEAAGAKV  184 (187)
T ss_pred             EEeecCccchhHHHHHHHHhccccHHHHHHHHHhccHHHHcCCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999986

>cd00387 Ribosomal_L7_L12 Ribosomal protein L7/L12

Probab=100.00  E-value=4.7e-42  Score=261.84  Aligned_cols=124  Identities=56%  Similarity=0.752  Sum_probs=105.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHH
Q 045361           22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIK  101 (148)
Q Consensus        22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK  101 (148)
                      ++++|+|+|++|||+|++||++.|+++|||++.++++++++ ++|+++  .+++...+|||+|||+|++||+++||+|||
T Consensus         2 ~~~~i~d~i~~LtllE~~eLv~~le~~~gv~~~~~~~~~~~-~a~~~~--~~~~~~~~EKt~F~V~L~~~~~~~Ki~vIK   78 (127)
T cd00387           2 KVEEIVEALKELTLLEAAELVKALEEKFGVSASAAAAAAAA-AAPAAA--AAAAAEAEEKTEFDVVLESFGAAKKIAVIK   78 (127)
T ss_pred             cHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCcccccccccc-cCcccc--cccccchhhcceEEEEEeeCCchhhHHHHH
Confidence            68999999999999999999999999999998743332222 222221  111112359999999999999889999999


Q ss_pred             HHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361          102 AVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus       102 ~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +||++|||||+|||+|||++|++||+|+||+|||+||++|+++||+|
T Consensus        79 ~VR~it~LgLkEAK~lVe~~P~~iKe~vsKeeAE~ik~kLe~aGA~V  125 (127)
T cd00387          79 EVREITGLGLKEAKDLVESAPKVLKEGVSKEEAEEIKKKLEEAGAKV  125 (127)
T ss_pred             HHHHHhCCChHHHHHHHHhCcHHHHhCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999999999999999999999986

Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and

>TIGR00855 L12 ribosomal protein L7/L12

Probab=100.00  E-value=6.9e-40  Score=249.94  Aligned_cols=119  Identities=54%  Similarity=0.719  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHH
Q 045361           22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIK  101 (148)
Q Consensus        22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK  101 (148)
                      ..++|+|+|++|||+|++||++.|+++|||++++.  ++++ +++++   .++++ .+|||+|||+|+.++ ++||+|||
T Consensus         5 ~~~~ive~i~~LTllE~~eLv~~lee~fgV~a~a~--~a~~-~a~~~---~~~~~-~eEKt~f~V~L~~~~-~~Ki~vIK   76 (126)
T TIGR00855         5 SKEQIIEALKEMTVLELSELVKALEEKFGVSAAAP--VAAG-AAGAA---AAAAA-AEEKTEFDVILKGAG-DNKIAVIK   76 (126)
T ss_pred             cHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCccch--hhhc-ccccc---ccccc-ccccceeeEEEecCC-cchhHHHH
Confidence            35899999999999999999999999999999753  2221 11111   11122 349999999999987 68999999


Q ss_pred             HHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361          102 AVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus       102 ~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|
T Consensus        77 ~vR~itgLgLkEAK~lVe~~P~~ike~vsKeeAe~ik~~Le~aGa~v  123 (126)
T TIGR00855        77 VVREITGLGLKEAKDLVEGAPKVLKEGVSKEEAEELKKKLEEAGAKV  123 (126)
T ss_pred             HHHHHcCCcHHHHHHHHHhCcHHHHhCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999999999999999999999986

THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.

>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.1e-39  Score=245.96  Aligned_cols=118  Identities=54%  Similarity=0.756  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHH
Q 045361           22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIK  101 (148)
Q Consensus        22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK  101 (148)
                      .+++|+++|++||++|++||++.++++|||++++  |+++++++ + +  .+  +..+|||+|||+|++++ ++||+|||
T Consensus         4 ~~e~iie~i~~~svlel~eLvk~~eekfgVsaaa--~va~a~~~-a-~--a~--~aaeEktefdVvL~~~g-~kKI~VIK   74 (124)
T COG0222           4 TKEQIIEALKELTVLELSELVKALEEKFGVTAAA--PVAAAAAG-A-A--AA--EAAEEKTEFDVVLKSAG-GKKIAVIK   74 (124)
T ss_pred             cHHHHHHHHHHhhHHHHHHHHHHHHHHhCCccch--hhhhcccc-c-c--cc--ccccccceeEEEecccC-CcchhHHH
Confidence            4689999999999999999999999999999975  44333222 1 1  11  11349999999999996 79999999


Q ss_pred             HHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361          102 AVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus       102 ~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +||++|||||||||++||++|++||+|++|+|||+||++|+++||+|
T Consensus        75 ~vR~itGLGLKEAKdlVe~aP~~~KE~v~k~eAe~~kkkleeaGa~V  121 (124)
T COG0222          75 VVRELTGLGLKEAKDLVEGAPKVLKEGVSKEEAEEIKKKLEEAGAKV  121 (124)
T ss_pred             HHHHHhcccHHHHHHHHHhCcHHHHccCCHHHHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999999999999999999999986

>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed

Probab=100.00  E-value=3.5e-39  Score=245.22  Aligned_cols=117  Identities=56%  Similarity=0.771  Sum_probs=102.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHH
Q 045361           22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIK  101 (148)
Q Consensus        22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK  101 (148)
                      ++++|+|+|++|||+|++||++.|+++|||++++  |++++   ++++   ++ +..+|||+|||+|++|+ ++||+|||
T Consensus         4 ~~~~i~e~i~~LtllE~~eLv~~lee~fgv~a~~--~~~~~---~~~~---~~-~~~eEkt~f~V~L~~~~-~kKi~vIK   73 (123)
T PRK00157          4 TKEQIIEALKEMTVLELSELVKALEEKFGVSAAA--PVAAA---AAAA---AA-AAAEEKTEFDVVLKSAG-DKKIAVIK   73 (123)
T ss_pred             cHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccc--hhccc---cccc---cc-cccccccceeEEEeccc-hhhHHHHH
Confidence            5789999999999999999999999999999875  32221   1111   11 22359999999999994 79999999


Q ss_pred             HHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361          102 AVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus       102 ~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +||++|||||+|||+|||++|++||+|++|+|||++|++|+++||+|
T Consensus        74 ~vR~itgLgLkEAK~lVe~~P~~ike~v~keeAe~ik~~Le~aGa~v  120 (123)
T PRK00157         74 AVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEEAGAKV  120 (123)
T ss_pred             HHHHHhCCCHHHHHHHHHhCCHHHHhCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999999999999999999999986

>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.90  E-value=2.5e-24  Score=148.64  Aligned_cols=65  Identities=58%  Similarity=0.850  Sum_probs=57.3

Q ss_pred             ceeEEEecCCCchhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361           83 EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus        83 ~fdV~L~~~~~~kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +|||+|+++ +++||++||.||++|||||+|||++||++|++|++++++++||+++++|+++||+|
T Consensus         1 ef~V~L~~~-~~~ki~vIK~vR~~tgl~L~eAK~~vd~~p~~ik~~v~keeAe~ik~~Le~aGa~v   65 (68)
T PF00542_consen    1 EFDVVLKSF-GEKKIKVIKEVREITGLGLKEAKKLVDSLPKVIKEGVSKEEAEEIKKKLEAAGAKV   65 (68)
T ss_dssp             SEEEEEEE--TTGHHHHHHHHHHHC---HHHHHHHHCTTTEEEEEEE-HHHHHHHHHHHHCCT-EE
T ss_pred             CeEEEEeec-ccchHHHHHHHHHHhCCcHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence            699999999 68999999999999999999999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the C-terminal domain of the large subunit ribosomal proteins, known as the L7/L12 family. L7/L12 is present in each 50S subunit in four copies organised as two dimers. The L8 protein complex consisting of two dimers of L7/L12 and L10 in Escherichia coli ribosomes is assembled on the conserved region of 23 S rRNA termed the GTPase-associated domain []. The L7/L12 dimer probably interacts with EF-Tu. L7 and L12 only differ in a single post translational modification of the addition of an acetyl group to the N terminus of L7.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1DD4_B 1DD3_A 1RQU_B 2GYA_5 2GYC_5 1RQS_A 1RQV_A 1CTF_A 2XUX_L.

>PRK06771 hypothetical protein; Provisional

Probab=97.85  E-value=1.4e-05  Score=58.68  Aligned_cols=28  Identities=29%  Similarity=0.457  Sum_probs=26.4

Q ss_pred             chhHHHHHHHHHHcCCCHHHHHHHHhhc
Q 045361           94 NARIAVIKAVRTLTNLALKEAKDLIEGL  121 (148)
Q Consensus        94 ~kKi~vIK~vR~it~LgLkEAK~lVe~~  121 (148)
                      .+|++.||.+|+.||+||+|||++||++
T Consensus        66 Gkki~AIK~~Re~tG~~L~eAK~yVD~L   93 (93)
T PRK06771         66 GQTVTAVKRVREAFGFSLLEAKQYVDKL   93 (93)
T ss_pred             CCchHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            4899999999999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
2xtg_L	121	Trna Tranlocation On The 70s Ribosome: The Pre- Tra		8e-17
1rqu_A	120	Nmr Structure Of L7 Dimer From E.Coli Length = 120		9e-17
2gya_3	119	Structure Of The 50s Subunit Of A Pre-Translocation		1e-16
1rqs_A	74	Nmr Structure Of C-Terminal Domain Of Ribosomal Pro		1e-16
2bcw_B	68	Coordinates Of The N-Terminal Domain Of Ribosomal P		2e-15
2zjq_5	122	Interaction Of L7 With L11 Induced By Microccocin B		4e-10
2j01_M	125	Structure Of The Thermus Thermophilus 70s Ribosome		1e-09
1dd3_A	128	Crystal Structure Of Ribosomal Protein L12 From The		3e-06

>pdb|2XTG|L Chain L, Trna Tranlocation On The 70s Ribosome: The Pre- Translocational Translocation Intermediate Ti(Pre) Length = 121

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 81  KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
           KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAEA KK 
Sbjct: 52  KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKA 110
Query: 141 LEEAGA 146
           LEEAGA
Sbjct: 111 LEEAGA 116

>pdb|1RQU|A Chain A, Nmr Structure Of L7 Dimer From E.Coli Length = 120

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 81  KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
           KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAEA KK 
Sbjct: 51  KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKA 109
Query: 141 LEEAGA 146
           LEEAGA
Sbjct: 110 LEEAGA 115

>pdb|2GYA|3 Chain 3, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 119

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 81  KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
           KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAEA KK 
Sbjct: 50  KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKA 108
Query: 141 LEEAGA 146
           LEEAGA
Sbjct: 109 LEEAGA 114

>pdb|1RQS|A Chain A, Nmr Structure Of C-Terminal Domain Of Ribosomal Protein L7 From E.Coli Length = 74

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 81  KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
           KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAEA KK 
Sbjct: 5   KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKA 63
Query: 141 LEEAGA 146
           LEEAGA
Sbjct: 64  LEEAGA 69

>pdb|2BCW|B Chain B, Coordinates Of The N-Terminal Domain Of Ribosomal Protein L11,C-Terminal Domain Of Ribosomal Protein L7L12 AND A Portion Of The G' Domain Of Elongation Factor G, As Fitted Into Cryo-Em Map Of An Escherichia Coli 70sEf- GGdpFusidic Acid Complex Length = 68

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 83  EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLE 142
           EFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAEA KK LE
Sbjct: 1   EFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALE 59
Query: 143 EAGA 146
           EAGA
Sbjct: 60  EAGA 63

>pdb|2ZJQ|5 Chain 5, Interaction Of L7 With L11 Induced By Microccocin Binding To The Deinococcus Radiodurans 50s Subunit Length = 122

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 81  KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQ 140
           KTEFDVV+ +  ++ +I VIK +R +T L LKEAKD+ E      KEGV+KD+AE  K Q
Sbjct: 54  KTEFDVVLIDAGAS-KINVIKEIRGITGLGLKEAKDMSE-KGGVLKEGVAKDEAEKMKAQ 111
Query: 141 LEEAGAK 147
           LE AGA+
Sbjct: 112 LEAAGAR 118

>pdb|1DD3|A Chain A, Crystal Structure Of Ribosomal Protein L12 From Thermotoga Maritima Length = 128

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 81  KTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIE--GLPKK-FKEGVSKDDAEAA 137
           KTEFDVV+     N +I VIK VR +T L LKEAKDL+E  G P    K GVSK++AE  
Sbjct: 56  KTEFDVVLKSFGQN-KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEI 114
Query: 138 KKQLEEAGA 146
           KK+LEEAGA
Sbjct: 115 KKKLEEAGA 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
2ftc_E	137	L12MT, MRP-L12, 39S ribosomal protein L12, mitocho	1e-33
3sgf_J	121	50S ribosomal protein L7/L12; typeii release facto	5e-33
2j01_L	125	50S ribosomal protein L7; ribosome, tRNA, paromomy	1e-31
2zjq_5	122	50S ribosomal protein L7/L12; ribosome, ribosomal	7e-31
1dd3_A	128	50S ribosomal protein L7/L12; dimer formation, fle	2e-30
1ctf_A	74	Ribosomal protein L7/L12; 1.70A {Escherichia coli}	1e-24

>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 137

 Score =  114 bits (286), Expect = 1e-33
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)

Query: 22  KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAF-----APAAAVGVAPGAPGAEAPAS 76
           KI++L  +I+SLTL E+ +L + L+  L +              A         AE    
Sbjct: 2   KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVP 61

Query: 77  VEEEKTEFDVVIDEVPSNARIAVIKAVRT-LTNLALKEAKDLIEGLPKKFKEGVSKDDAE 135
            ++E+T F V + E     ++ +IK ++  +  + L +AK L+E LP++ K  V+K +AE
Sbjct: 62  KQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAE 121

Query: 136 AAKKQLEEAGAK 147
             K  LE  G  
Sbjct: 122 KIKAALEAVGGT 133

>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A Length = 121

 Score =  112 bits (281), Expect = 5e-33
 Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 12/126 (9%)

Query: 22  KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEK 81
             +++   ++++++ +V  L+  +++K GVSAAA    AA            P    EEK
Sbjct: 4   TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAA-----------GPVEAAEEK 52

Query: 82  TEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQL 141
           TEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAEA KK L
Sbjct: 53  TEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKAL 111

Query: 142 EEAGAK 147
           EEAGA+
Sbjct: 112 EEAGAE 117

>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1 Length = 122

 Score =  106 bits (267), Expect = 7e-31
 Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 11/126 (8%)

Query: 22  KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEK 81
             + L  ++  LT+ E+ +L+D L++  GV+AA        G         A +   EEK
Sbjct: 4   DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGGGAG---------AASPAAEEK 54

Query: 82  TEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQL 141
           TEFDVV+ +  ++ +I VIK +R +T L LKEAKD+ E      KEGV+KD+AE  K QL
Sbjct: 55  TEFDVVLIDAGAS-KINVIKEIRGITGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQL 112

Query: 142 EEAGAK 147
           E AGA+
Sbjct: 113 EAAGAR 118

>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I Length = 128

 Score =  105 bits (264), Expect = 2e-30
 Identities = 63/128 (49%), Positives = 78/128 (60%), Gaps = 9/128 (7%)

Query: 23  IEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKT 82
           I+++   I  LT+ E+  LV  L+DK GV+AAA    AA  VA  A GA       EEKT
Sbjct: 3   IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQ-----EEKT 57

Query: 83  EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPK---KFKEGVSKDDAEAAKK 139
           EFDVV+     N +I VIK VR +T L LKEAKDL+E         K GVSK++AE  KK
Sbjct: 58  EFDVVLKSFGQN-KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKK 116

Query: 140 QLEEAGAK 147
           +LEEAGA+
Sbjct: 117 KLEEAGAE 124

>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B Length = 74

 Score = 89.4 bits (222), Expect = 1e-24
 Identities = 46/70 (65%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 78  EEEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAA 137
            EEKTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAEA 
Sbjct: 2   AEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEAL 60

Query: 138 KKQLEEAGAK 147
           KK LEEAGA+
Sbjct: 61  KKALEEAGAE 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
2ftc_E	137	L12MT, MRP-L12, 39S ribosomal protein L12, mitocho	100.0
2j01_L	125	50S ribosomal protein L7; ribosome, tRNA, paromomy	100.0
2zjq_5	122	50S ribosomal protein L7/L12; ribosome, ribosomal	100.0
1dd3_A	128	50S ribosomal protein L7/L12; dimer formation, fle	100.0
3sgf_J	121	50S ribosomal protein L7/L12; typeii release facto	100.0
1ctf_A	74	Ribosomal protein L7/L12; 1.70A {Escherichia coli}	99.96
1dd4_C	40	50S ribosomal protein L7/L12; dimer formation, fle	99.18
1zav_U	30	50S ribosomal protein L7/L12; ribosome structure a	98.7
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	88.55

>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=1.4e-44  Score=277.98  Aligned_cols=127  Identities=31%  Similarity=0.554  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhc--cCCCCCCCCC---CCCcccccccceeEEEecCCCchh
Q 045361           22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAV--GVAPGAPGAE---APASVEEEKTEFDVVIDEVPSNAR   96 (148)
Q Consensus        22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~--ga~~~a~~~~---~~~~~~~EKt~fdV~L~~~~~~kK   96 (148)
                      |+++|+|+|++|||+|++|||+.|+++|||++++++|++++  +++|+++++.   +.++..+|||+|||+|++||+++|
T Consensus         2 kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~~~~~~~~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~~a~~K   81 (137)
T 2ftc_E            2 KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDK   81 (137)
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcccccccccccccCCCCccccccccccccccccCCeeEEEeeccCccch
Confidence            89999999999999999999999999999998764443321  1111111111   112223589999999999998899


Q ss_pred             HHHHHHHHHH-cCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361           97 IAVIKAVRTL-TNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus        97 i~vIK~vR~i-t~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      |+|||+||++ |||||||||+|||++|++||+|+||+|||+||++|+++||+|
T Consensus        82 I~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~V  134 (137)
T 2ftc_E           82 VKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTV  134 (137)
T ss_pred             hHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence            9999999997 999999999999999999999999999999999999999986

>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1

Probab=100.00  E-value=8.5e-41  Score=252.65  Aligned_cols=116  Identities=44%  Similarity=0.623  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHH
Q 045361           22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIK  101 (148)
Q Consensus        22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK  101 (148)
                      ++++|+|+|++|||+|++||++.|+++|||++++  |++++  +|+++   + + +.+|||+|||+|++|+ ++||+|||
T Consensus         4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaa--p~a~a--~~~a~---a-~-a~eEKteFdV~L~~~~-~~KI~VIK   73 (122)
T 2zjq_5            4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAV--AVSGG--GAGAA---S-P-AAEEKTEFDVVLIDAG-ASKINVIK   73 (122)
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCcc--ccccc--CCCcc---c-c-cccccceeEEEEecCC-cchHHHHH
Confidence            4689999999999999999999999999999864  43322  12211   1 1 2249999999999997 79999999


Q ss_pred             HHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361          102 AVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus       102 ~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|
T Consensus        74 ~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~V  119 (122)
T 2zjq_5           74 EIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARV  119 (122)
T ss_pred             HHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999 99999999999999999999999986

>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I

Probab=100.00  E-value=8.9e-42  Score=259.73  Aligned_cols=120  Identities=52%  Similarity=0.716  Sum_probs=101.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHHH
Q 045361           23 IEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIKA  102 (148)
Q Consensus        23 v~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK~  102 (148)
                      +++|+|+|++||++|++||++.|+++|||++.+  |+++++ +|+++++ + +++.+|||+|||+|++|+ ++||+|||+
T Consensus         3 ~~~ive~i~~ltllE~~eLv~~lee~fgv~aaa--pva~~~-~~~~~~a-~-~~a~eEKteFdV~L~~~~-~~KI~VIK~   76 (128)
T 1dd3_A            3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAA--PVAVAA-APVAGAA-A-GAAQEEKTEFDVVLKSFG-QNKIQVIKV   76 (128)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHH--HHHHHH-HHHHHHH-H-HHHHHTTSSEEEEEEECT-TCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcc--hhhccc-ccccccc-c-cccccccceeeEEEecCC-cchHHHHHH
Confidence            689999999999999999999999999999864  332221 1101100 1 012359999999999997 799999999


Q ss_pred             HHHHcCCCHHHHHHHHhhcCh---hhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361          103 VRTLTNLALKEAKDLIEGLPK---KFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus       103 vR~it~LgLkEAK~lVe~~P~---~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      ||++|||||||||+|||++|+   +||+|+||+|||+||++|+++||+|
T Consensus        77 VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~V  125 (128)
T 1dd3_A           77 VREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEV  125 (128)
T ss_dssp             HHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEE
T ss_pred             HHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence            999999999999999999999   9999999999999999999999986

>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A

Probab=100.00  E-value=1.7e-41  Score=256.09  Aligned_cols=115  Identities=49%  Similarity=0.719  Sum_probs=26.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhhccCCCCCCCCCCCCcccccccceeEEEecCCCchhHHHHH
Q 045361           22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKTEFDVVIDEVPSNARIAVIK  101 (148)
Q Consensus        22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~~ga~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK  101 (148)
                      .+++|+|+|++||++|++||++.|+++|||++++  |+++    |+++    + ++.+|||+|||+|++++ ++||+|||
T Consensus         4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa--~~a~----~a~~----a-~a~eEKteFdV~L~~~g-~~Ki~VIK   71 (121)
T 3sgf_J            4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAA--AVAV----AAGP----V-EAAEEKTEFDVILKAAG-ANKVAVIK   71 (121)
T ss_dssp             CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCccc--cccc----cccc----c-ccccccceeEEEEecCc-hhhHHHHH
Confidence            4689999999999999999999999999999864  3211    1111    1 12349999999999997 69999999


Q ss_pred             HHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361          102 AVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus       102 ~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|
T Consensus        72 ~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~V  118 (121)
T 3sgf_J           72 AVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEV  118 (121)
T ss_dssp             -----------------------------------------------
T ss_pred             HHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999999999999999999999987

>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B

Probab=99.96  E-value=5e-30  Score=179.25  Aligned_cols=69  Identities=65%  Similarity=0.864  Sum_probs=63.8

Q ss_pred             ccccceeEEEecCCCchhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361           79 EEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus        79 ~EKt~fdV~L~~~~~~kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +|||+|||+|++|+ ++||+|||+||++|||||+|||+|||++|++||+|+||+|||+||++|+++||+|
T Consensus         3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~V   71 (74)
T 1ctf_A            3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEV   71 (74)
T ss_dssp             ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEE
T ss_pred             cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence            38999999999997 7999999999999999999999999999999999999999999999999999986

>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1

Probab=99.18  E-value=2.5e-11  Score=75.61  Aligned_cols=34  Identities=44%  Similarity=0.683  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCccc
Q 045361           22 KIEKLATEISSLTLQEVCNLVDYLQDKLGVSAAA   55 (148)
Q Consensus        22 kv~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~   55 (148)
                      ++++|+|+|++||++|++||++.||++|||++++
T Consensus         2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaaa   35 (40)
T 1dd4_C            2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAA   35 (40)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC
T ss_pred             CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCccc
Confidence            4689999999999999999999999999998753

>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C

Probab=98.70  E-value=1.2e-08  Score=59.85  Aligned_cols=28  Identities=39%  Similarity=0.684  Sum_probs=27.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 045361           23 IEKLATEISSLTLQEVCNLVDYLQDKLG   50 (148)
Q Consensus        23 v~~ivd~i~~LtllE~~eLv~~le~~fg   50 (148)
                      +++|+|+|++||++|++|||+.||++||
T Consensus         3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG   30 (30)
T 1zav_U            3 IDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999998

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=88.55  E-value=0.33  Score=32.43  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHhhcCh
Q 045361           97 IAVIKAVRTLTNLALKEAKDLIEGLPK  123 (148)
Q Consensus        97 i~vIK~vR~it~LgLkEAK~lVe~~P~  123 (148)
                      ...||+||+.||.|++++|+.++.+-.
T Consensus        10 ~~~Vk~LRe~TGag~~dcKkAL~e~~G   36 (64)
T 2cp9_A           10 KELLMKLRRKTGYSFVNCKKALETCGG   36 (64)
T ss_dssp             CHHHHHHHHHHCCCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence            478999999999999999998776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1ctfa_	68	d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal	8e-20
d1dd3a2	71	d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-ter	2e-18
d1dd3a1	57	a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligom	0.001

>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 68

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 75.4 bits (186), Expect = 8e-20
 Identities = 42/65 (64%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 83  EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLE 142
           EFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAEA KK LE
Sbjct: 1   EFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALE 59

Query: 143 EAGAK 147
           EAGA+
Sbjct: 60  EAGAE 64

>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 71

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 72.0 bits (177), Expect = 2e-18
 Identities = 37/68 (54%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 83  EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPK---KFKEGVSKDDAEAAKK 139
           EFDVV+     N +I VIK VR +T L LKEAKDL+E         K GVSK++AE  KK
Sbjct: 1   EFDVVLKSFGQN-KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKK 59

Query: 140 QLEEAGAK 147
           +LEEAGA+
Sbjct: 60  KLEEAGAE 67

>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]} Length = 57

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 33.4 bits (76), Expect = 0.001
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 23 IEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAAVGVAPGAPGAEAPASVEEEKT 82
          I+++   I  LT+ E+  LV  L+DK GV+AAA    AA  VA  A GA       EEKT
Sbjct: 3  IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQ-----EEKT 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d2zjq51	71	Ribosomal protein L7/12, C-terminal domain {Deinoc	99.95
d1ctfa_	68	Ribosomal protein L7/12, C-terminal domain {Escher	99.94
d1dd3a2	71	Ribosomal protein L7/12, C-terminal domain {Thermo	99.93
d1dd3a1	57	Ribosomal protein L7/12, oligomerisation (N-termin	99.06
d2gyc31	47	Ribosomal protein L7/12, oligomerisation (N-termin	98.69
d1zavu1	30	Ribosomal protein L7/12, oligomerisation (N-termin	98.17
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	94.34
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	92.7
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	92.08

>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.95  E-value=1e-28  Score=169.86  Aligned_cols=68  Identities=56%  Similarity=0.749  Sum_probs=64.8

Q ss_pred             ccccceeEEEecCCCchhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361           79 EEKTEFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus        79 ~EKt~fdV~L~~~~~~kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +|||+|||+|+++| ++||+|||+||++|||||+|||+|||+ |.+||+|+||+|||++|++|+++||+|
T Consensus         1 EEKt~F~V~L~~~~-~~Ki~vIK~VR~it~LgLkeAK~lVe~-p~~ike~vsKeeAE~~k~~Le~aGA~V   68 (71)
T d2zjq51           1 EEKTEFDVVLIDAG-ASKINVIKEIRGITGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQLEAAGARV   68 (71)
T ss_pred             CCCcEEEEEEeeCC-cchhhHHHHHHHhcCCCHHHHHhhccC-chHhhcCCCHHHHHHHHHHHHHcCCEE
Confidence            38999999999998 579999999999999999999999998 779999999999999999999999986

>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4.2e-28  Score=165.52  Aligned_cols=65  Identities=63%  Similarity=0.851  Sum_probs=63.0

Q ss_pred             ceeEEEecCCCchhHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361           83 EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus        83 ~fdV~L~~~~~~kKi~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +|||+|+++| ++||+|||+||++|||||+|||+|||++|++||+|+||+|||++|++|+++||+|
T Consensus         1 EF~V~L~~~~-~~Ki~vIK~VR~it~lgLkEAK~lVe~~P~~ike~vskeeAE~ik~~Le~aGA~V   65 (68)
T d1ctfa_           1 EFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEV   65 (68)
T ss_dssp             CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEE
T ss_pred             CeEEEEccCC-cchhHHHHHHHHhcCCCHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHHHHcCCEE
Confidence            6999999998 4799999999999999999999999999999999999999999999999999986

>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=4.1e-27  Score=161.77  Aligned_cols=65  Identities=55%  Similarity=0.761  Sum_probs=61.9

Q ss_pred             ceeEEEecCCCchhHHHHHHHHHHcCCCHHHHHHHHhhcCh---hhhcCCCHHHHHHHHHHHHHcCCcC
Q 045361           83 EFDVVIDEVPSNARIAVIKAVRTLTNLALKEAKDLIEGLPK---KFKEGVSKDDAEAAKKQLEEAGAKF  148 (148)
Q Consensus        83 ~fdV~L~~~~~~kKi~vIK~vR~it~LgLkEAK~lVe~~P~---~IKe~vsKeeAE~ik~kle~aGA~V  148 (148)
                      +|||+|++|+ ++||+|||+||++|||||+|||+|||++|+   +||+|+||+|||++|++||++||+|
T Consensus         1 EF~V~L~~~~-~~KI~vIK~VR~it~lgLkEAK~lVe~~p~~~~vike~v~KeeAE~~K~~Le~aGA~V   68 (71)
T d1dd3a2           1 EFDVVLKSFG-QNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEV   68 (71)
T ss_dssp             SEEEEEEECT-TCHHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEcccC-ccchhHHHHHHHhcCCCHHHHHHHHHhcCCchHHHhcCCCHHHHHHHHHHHHHcCCEE
Confidence            6999999997 579999999999999999999999998875   8999999999999999999999986

>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=1.5e-12  Score=84.67  Aligned_cols=37  Identities=46%  Similarity=0.718  Sum_probs=33.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccccchhh
Q 045361           23 IEKLATEISSLTLQEVCNLVDYLQDKLGVSAAAFAPAAA   61 (148)
Q Consensus        23 v~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~~~p~~~   61 (148)
                      +++|++.|.+||++|++||++.||++||||+++  |+++
T Consensus         3 ~e~iie~I~~~tv~El~ELvKalEekfGVsAaa--PV~~   39 (57)
T d1dd3a1           3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAA--PVAV   39 (57)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHH--HHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhCcccch--hHHh
Confidence            589999999999999999999999999999874  5544

>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=8.9e-09  Score=64.27  Aligned_cols=33  Identities=27%  Similarity=0.592  Sum_probs=31.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCccc
Q 045361           23 IEKLATEISSLTLQEVCNLVDYLQDKLGVSAAA   55 (148)
Q Consensus        23 v~~ivd~i~~LtllE~~eLv~~le~~fgv~~~~   55 (148)
                      .++|++.|.+||++|+.||++.+|+||||++++
T Consensus         3 ke~Ileaia~MSVmdvveLi~amEEKFGVsaaa   35 (47)
T d2gyc31           3 KDQIIEAVAAMSVMDVVELISAMEEKFGVSAAA   35 (47)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHTCTTTTH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhCcchhc
Confidence            378999999999999999999999999999875

>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=8.7e-07  Score=50.01  Aligned_cols=29  Identities=38%  Similarity=0.661  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 045361           22 KIEKLATEISSLTLQEVCNLVDYLQDKLG   50 (148)
Q Consensus        22 kv~~ivd~i~~LtllE~~eLv~~le~~fg   50 (148)
                      .+++|++.|..||+-|++|||+.|+++||
T Consensus         2 ~~eeiv~aiekltvaelaelvk~ledkfg   30 (30)
T d1zavu1           2 TIDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             CHHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence            37899999999999999999999999998

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.34  E-value=0.019  Score=35.62  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHcCCCHHHHHHHHhhcChhhhcCCCHHHHHHHH
Q 045361           96 RIAVIKAVRTLTNLALKEAKDLIEGLPKKFKEGVSKDDAEAAK  138 (148)
Q Consensus        96 Ki~vIK~vR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik  138 (148)
                      ++..||.+|+.||.|+++.|+.++..-      -.-|.|.++-
T Consensus         2 ~~elvK~LR~~Tga~~~dcKkAL~e~~------gD~ekA~e~L   38 (52)
T d1aipc1           2 QMELIKKLREATGAGMMDVKRALEDAG------WDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTT------TCHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHcC------CCHHHHHHHH
Confidence            689999999999999999999987543      4455555543

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.05  Score=33.88  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHhhcC
Q 045361           97 IAVIKAVRTLTNLALKEAKDLIEGLP  122 (148)
Q Consensus        97 i~vIK~vR~it~LgLkEAK~lVe~~P  122 (148)
                      ...||.+|+.||.|+++.|+.++..-
T Consensus         5 ~~~iK~LR~~Tgag~~dCKkAL~e~~   30 (54)
T d1efub3           5 ASLVKELRERTGAGMMDCKKALTEAN   30 (54)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            57899999999999999999887543

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.08  E-value=0.066  Score=33.55  Aligned_cols=26  Identities=15%  Similarity=0.193  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHhhcC
Q 045361           97 IAVIKAVRTLTNLALKEAKDLIEGLP  122 (148)
Q Consensus        97 i~vIK~vR~it~LgLkEAK~lVe~~P  122 (148)
                      ..+||++|+.||.|+++.|+.++..-
T Consensus         5 ~~lvk~LRe~Tga~~~dcKkAL~e~~   30 (56)
T d1xb2b1           5 KELLMKLRRKTGYSFINCKKALETCG   30 (56)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            57999999999999999999987654